Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1536239
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.33
Warning! 124408 characters in sequence are not A, C, G, or T
File 7 of 14
Found at i:769245 original size:13 final size:14
Alignment explanation
Indices: 769218--769264 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
769208 ATTAAATGAT
769218 ATTATTTTAATAAAA
1 ATTA-TTTAATAAAA
769233 ATTATTT-AT-AAA
1 ATTATTTAATAAAA
*
769245 ATTTTTTAATAAAA
1 ATTATTTAATAAAA
*
769259 AATATT
1 ATTATT
769265 ATTTAATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
12 9 0.33
13 4 0.15
14 10 0.37
15 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
ATTATTTAATAAAA
Found at i:770204 original size:72 final size:72
Alignment explanation
Indices: 770105--770358 Score: 330
Period size: 72 Copynumber: 3.5 Consensus size: 72
770095 AATGAAATGA
* * * * * * * *
770105 TAATTCGAGATAATTTACACAATAAATACAATTAACAACTATTTCTACATATTTAAAACTAATAT
1 TAATCCGAGATAATCTGCACGATAAATACAATCAACAACTATTTATGCATATTTAAAACTACTAT
*
770170 CAATAAC
66 CAACAAC
* * *
770177 TAATCCGAGATAA-CTTGCACGATAAATACAATCAACAACAATTTTTGCATATTTAAAACTGCTA
1 TAATCCGAGATAATC-TGCACGATAAATACAATCAACAACTATTTATGCATATTTAAAACTACTA
770241 TCAACAAC
65 TCAACAAC
* *
770249 TAATCCGAGATAATCTGCACGAAAAATACAATCAATAACTATTTATGCATATTTAAAACTACTAT
1 TAATCCGAGATAATCTGCACGATAAATACAATCAACAACTATTTATGCATATTTAAAACTACTAT
*
770314 TAACAAC
66 CAACAAC
* * *
770321 TAATTCGAGATAATCTGCATGATAACTACAATCAACAA
1 TAATCCGAGATAATCTGCACGATAAATACAATCAACAA
770359 TTTTGTGTGC
Statistics
Matches: 158, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
72 157 0.99
73 1 0.01
ACGTcount: A:0.46, C:0.18, G:0.07, T:0.30
Consensus pattern (72 bp):
TAATCCGAGATAATCTGCACGATAAATACAATCAACAACTATTTATGCATATTTAAAACTACTAT
CAACAAC
Found at i:770689 original size:13 final size:13
Alignment explanation
Indices: 770673--770701 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
770663 ATGGAGGTTG
770673 AGTAGGAAAATCT
1 AGTAGGAAAATCT
770686 AGTAGGAAAATCT
1 AGTAGGAAAATCT
770699 AGT
1 AGT
770702 GGGTAAGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.07, G:0.24, T:0.24
Consensus pattern (13 bp):
AGTAGGAAAATCT
Found at i:775736 original size:34 final size:35
Alignment explanation
Indices: 775673--775741 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
775663 ACATTTTTTA
* *
775673 TACTATAAACTAATTACTCCAAAATTAATAATAAT
1 TACTATAAACTAATTACTACAAAAATAATAATAAT
775708 TACTATAAACTAATTAC-ACAAAAATAATAATAAT
1 TACTATAAACTAATTACTACAAAAATAATAATAAT
775742 AAACGACTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 15 0.47
35 17 0.53
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (35 bp):
TACTATAAACTAATTACTACAAAAATAATAATAAT
Found at i:775846 original size:31 final size:29
Alignment explanation
Indices: 775811--775884 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 29
775801 ACGAATTTAC
* *
775811 TATTAAAAAA-ATAATAATCAAAATTTTAACA
1 TATTAAAAAATAAAATAAT-AAAA--TTAAAA
775842 TATTAAAAAATAAAATAATAAAATTAAAA
1 TATTAAAAAATAAAATAATAAAATTAAAA
775871 TATTAAAAAATAAA
1 TATTAAAAAATAAA
775885 TATTAAATTA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 19 0.47
31 14 0.35
32 7 0.17
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (29 bp):
TATTAAAAAATAAAATAATAAAATTAAAA
Found at i:775885 original size:14 final size:14
Alignment explanation
Indices: 775841--775891 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
775831 AAATTTTAAC
775841 ATATTAAAAAATAA
1 ATATTAAAAAATAA
775855 A-A-TAATAAAATTAAA
1 ATATTAA-AAAA-T-AA
775870 ATATTAAAAAATAA
1 ATATTAAAAAATAA
775884 ATATTAAA
1 ATATTAAA
775892 TTACTTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
12 3 0.09
13 5 0.16
14 12 0.38
15 4 0.12
16 5 0.16
17 3 0.09
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
ATATTAAAAAATAA
Found at i:776650 original size:27 final size:28
Alignment explanation
Indices: 776602--776655 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 28
776592 AATTCTAGTA
*
776602 TTAAGTCAGATTTATAATTTATATTTAT
1 TTAAGTCAGATTTATAAATTATATTTAT
*
776630 TTAA-TCAGATATT-TAAATTATGTTTA
1 TTAAGTCAGAT-TTATAAATTATATTTA
776656 AAAGTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (28 bp):
TTAAGTCAGATTTATAAATTATATTTAT
Found at i:776875 original size:3 final size:3
Alignment explanation
Indices: 776869--776912 Score: 70
Period size: 3 Copynumber: 14.7 Consensus size: 3
776859 AATAATAATA
* *
776869 ATT ATT ATT ATT ATT ATT ATA ATT ATT ATT ATT ATT GTT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
776913 GGTGTATTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:776893 original size:15 final size:15
Alignment explanation
Indices: 776826--776903 Score: 68
Period size: 15 Copynumber: 5.0 Consensus size: 15
776816 AAAACTAATA
*
776826 AATT-TTATAATTAT
1 AATTATTATTATTAT
776840 AAATTGATTATGTATATAT
1 -AATT-ATTAT-TAT-TAT
* * *
776859 AATAATAATAATTAT
1 AATTATTATTATTAT
*
776874 TATTATTATTATTAT
1 AATTATTATTATTAT
776889 AATTATTATTATTAT
1 AATTATTATTATTAT
776904 TGTTATTATG
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
15 32 0.64
16 2 0.04
17 8 0.16
18 5 0.10
19 3 0.06
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:777248 original size:2 final size:2
Alignment explanation
Indices: 777241--777303 Score: 83
Period size: 2 Copynumber: 31.5 Consensus size: 2
777231 AACTATTTCT
* * *
777241 TA TA TA TA TA TA TA AA CTA TT TC T- TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
777283 TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
777304 CATGAATAGT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
1 1 0.02
2 53 0.96
3 1 0.02
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:777262 original size:24 final size:24
Alignment explanation
Indices: 777230--777302 Score: 103
Period size: 24 Copynumber: 3.0 Consensus size: 24
777220 ACAATAATAC
777230 AAACTATTTCTTATATATATATAT
1 AAACTATTTCTTATATATATATAT
777254 AAACTATTTCTTATATATATATAT
1 AAACTATTTCTTATATATATATAT
* * *
777278 ATA-TATATATATATATATATATAT
1 AAACTATTTCT-TATATATATATAT
777302 A
1 A
777303 TCATGAATAG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 5 0.11
24 40 0.89
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.49
Consensus pattern (24 bp):
AAACTATTTCTTATATATATATAT
Found at i:777400 original size:18 final size:21
Alignment explanation
Indices: 777373--777414 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 21
777363 TCATTTATTA
777373 AAAAAAATTA-A-A-TTAAAT
1 AAAAAAATTATATACTTAAAT
*
777391 AAAAATATTATATACTTAAAT
1 AAAAAAATTATATACTTAAAT
777412 AAA
1 AAA
777415 TAGTGATCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 9 0.45
19 1 0.05
20 1 0.05
21 9 0.45
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAAAAATTATATACTTAAAT
Found at i:782713 original size:27 final size:26
Alignment explanation
Indices: 782683--782742 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
782673 AATTTAATTT
* *
782683 AATTTAATTTATTATTTAATAATAAAA
1 AATTTAATTTA-AATTAAATAATAAAA
* *
782710 AATTTTATTTAAATTAAATTATAAAA
1 AATTTAATTTAAATTAAATAATAAAA
782736 ATATTTA
1 A-ATTTA
782743 TAAATATATT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
AATTTAATTTAAATTAAATAATAAAA
Found at i:783143 original size:19 final size:18
Alignment explanation
Indices: 783119--783157 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
783109 TTGACTTACA
783119 TTTTAACTATTTATTCATT
1 TTTTAACTATTTATT-ATT
*
783138 TTTTAATTATTTATTATT
1 TTTTAACTATTTATTATT
783156 TT
1 TT
783158 ACTTTGTACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTTAACTATTTATTATT
Found at i:783317 original size:16 final size:17
Alignment explanation
Indices: 783284--783320 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
783274 TAGAAATATA
*
783284 ATAAAATATTTATAAAT
1 ATAAAATAATTATAAAT
783301 ATAAAATAATT-TAAAT
1 ATAAAATAATTATAAAT
783317 ATAA
1 ATAA
783321 TTATAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAAAATAATTATAAAT
Found at i:783335 original size:20 final size:20
Alignment explanation
Indices: 783277--783353 Score: 59
Period size: 22 Copynumber: 3.9 Consensus size: 20
783267 TATGAATTAG
* **
783277 AAATATAATAAAATATTTAT
1 AAATATAATATAATAAATAT
*
783297 AAATATAAAATAATTTAAATAT
1 AAATATAATATAA--TAAATAT
*
783319 AATTATAATATAATAAA-AT
1 AAATATAATATAATAAATAT
* *
783338 ACATA-AATAAAATAAA
1 AAATATAATATAATAAA
783354 AATATATAAA
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
18 10 0.22
19 5 0.11
20 15 0.33
22 16 0.35
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.34
Consensus pattern (20 bp):
AAATATAATATAATAAATAT
Found at i:783583 original size:32 final size:33
Alignment explanation
Indices: 783529--783599 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 33
783519 AATAATATAA
* * * *
783529 ATATGATATGTATATATGAATATTTTTAAATTT
1 ATATAATATGAATATATGAATATATTAAAATTT
*
783562 ATATAATATGAAT-TATTAATATATTAAAATTT
1 ATATAATATGAATATATGAATATATTAAAATTT
783594 ATATAA
1 ATATAA
783600 ATATAAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
32 22 0.67
33 11 0.33
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (33 bp):
ATATAATATGAATATATGAATATATTAAAATTT
Found at i:783606 original size:17 final size:17
Alignment explanation
Indices: 783556--783608 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
783546 GAATATTTTT
783556 AAATTTATAT-AATAT-
1 AAATTTATATAAATATA
*
783571 GAA-TTAT-TAATATATTA
1 AAATTTATATAA-ATA-TA
783588 AAATTTATATAAATATA
1 AAATTTATATAAATATA
783605 AAAT
1 AAAT
783609 ATTTTAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
13 1 0.03
14 5 0.17
15 5 0.17
16 1 0.03
17 8 0.27
18 7 0.23
19 3 0.10
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
AAATTTATATAAATATA
Found at i:785382 original size:3 final size:3
Alignment explanation
Indices: 785376--785412 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
785366 ATAATAATTT
785376 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
785413 GGTGTATTAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:785535 original size:13 final size:14
Alignment explanation
Indices: 785519--785549 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
785509 TTGGGTAAGT
785519 GTTTAGG-GTATAA
1 GTTTAGGAGTATAA
785532 GTTTAGGAGTATAA
1 GTTTAGGAGTATAA
785546 GTTT
1 GTTT
785550 TGACACATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.41
14 10 0.59
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (14 bp):
GTTTAGGAGTATAA
Found at i:792054 original size:17 final size:18
Alignment explanation
Indices: 792018--792067 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 18
792008 ATGTTTTAAA
*
792018 ATATATATAATATAAA-TT
1 ATATAAATAATA-AAATTT
*
792036 AT-TAATTAATAAAATTT
1 ATATAAATAATAAAATTT
792053 ATATAAAT-ATAAAAT
1 ATATAAATAATAAAAT
792068 AATTTAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
16 3 0.11
17 18 0.67
18 6 0.22
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
ATATAAATAATAAAATTT
Found at i:792339 original size:15 final size:16
Alignment explanation
Indices: 792319--792370 Score: 56
Period size: 15 Copynumber: 3.2 Consensus size: 16
792309 TAAATATTTT
792319 TAAATTTATAT-AATA
1 TAAATTTATATAAATA
792334 TAAA-TTAT-TAACATA
1 TAAATTTATATAA-ATA
792349 TTAAAATTTATATAAATA
1 -T-AAATTTATATAAATA
792367 TAAA
1 TAAA
792371 ATATTTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
13 1 0.03
14 5 0.16
15 7 0.23
16 4 0.13
17 4 0.13
18 7 0.23
19 3 0.10
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAATTTATATAAATA
Found at i:792370 original size:17 final size:17
Alignment explanation
Indices: 792320--792372 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
792310 AAATATTTTT
792320 AAATTTATAT-AATAT-
1 AAATTTATATAAATATA
792335 AAA-TTAT-TAACATATTA
1 AAATTTATATAA-ATA-TA
792352 AAATTTATATAAATATA
1 AAATTTATATAAATATA
792369 AAAT
1 AAAT
792373 ATTTTAAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
13 1 0.03
14 5 0.16
15 6 0.19
16 1 0.03
17 9 0.28
18 7 0.22
19 3 0.09
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (17 bp):
AAATTTATATAAATATA
Found at i:792581 original size:20 final size:19
Alignment explanation
Indices: 792534--792582 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
792524 TTTATTAATT
*
792534 AAATAATAATTTAAAGTAA
1 AAATATTAATTTAAAGTAA
* *
792553 AATTAATTAATTTAAATTATA
1 AAAT-ATTAATTTAAAGTA-A
792574 AAATATTAA
1 AAATATTAA
792583 CTCATAATTG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 3 0.12
20 17 0.71
21 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
AAATATTAATTTAAAGTAA
Found at i:792960 original size:16 final size:16
Alignment explanation
Indices: 792934--792976 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
792924 TAAATTTTTA
* *
792934 AAAAATATTTATGATT
1 AAAATTATTTATGAAT
*
792950 AAATTTATTTATGAAT
1 AAAATTATTTATGAAT
792966 AAAATTATTTA
1 AAAATTATTTA
792977 ATTTATATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (16 bp):
AAAATTATTTATGAAT
Found at i:793085 original size:20 final size:18
Alignment explanation
Indices: 793060--793109 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
793050 TTAAAAGTAA
793060 AAATATATAAATATTAATTT
1 AAATATATAAA-ATTAA-TT
*
793080 AAATATTTTAAAATTAATT
1 AAATA-TATAAAATTAATT
793099 AAATA-ATAAAA
1 AAATATATAAAA
793110 AAGAATCACC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 5 0.19
19 7 0.26
20 10 0.37
21 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATATATAAAATTAATT
Found at i:793310 original size:23 final size:21
Alignment explanation
Indices: 793276--793329 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 21
793266 TTAATATTTT
*
793276 AAAAT-ATATAAATATGATATAA
1 AAAATAATTTAAATAT-A-ATAA
793298 AAAATAATTTAAATATAATAA
1 AAAATAATTTAAATATAATAA
793319 AATATATAATT
1 AA-A-ATAATT
793330 ATATTAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 6 0.21
22 7 0.25
23 15 0.54
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (21 bp):
AAAATAATTTAAATATAATAA
Found at i:793384 original size:34 final size:34
Alignment explanation
Indices: 793303--793386 Score: 86
Period size: 34 Copynumber: 2.5 Consensus size: 34
793293 TATAAAAAAT
* *
793303 AATTTAAATATAATA-AAATATATAATTATATTAA
1 AATTTATATA-AATATAAATATATAATTATAATAA
*
793337 AATTGT-TAT-AATATAAATTATTTAA-TATAATAA
1 AATT-TATATAAATATAAA-TATATAATTATAATAA
793370 AATTTATATAAATATAA
1 AATTTATATAAATATAA
793387 TACGTAAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
32 5 0.12
33 17 0.40
34 19 0.45
35 1 0.02
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (34 bp):
AATTTATATAAATATAAATATATAATTATAATAA
Found at i:793899 original size:22 final size:21
Alignment explanation
Indices: 793868--793910 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
793858 TAATAAAAAC
793868 TTAAAATAATTTAAATTTAAA
1 TTAAAATAATTTAAATTTAAA
* *
793889 TTAAATATAATTTTATTTTAAA
1 TTAAA-ATAATTTAAATTTAAA
793911 AAATGTTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAAAATAATTTAAATTTAAA
Found at i:796617 original size:2 final size:2
Alignment explanation
Indices: 796612--796649 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
796602 TTTAAAAAAC
*
796612 AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
796650 CTTCACCTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:800201 original size:23 final size:23
Alignment explanation
Indices: 800175--800220 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
800165 AAATTTTAAT
*
800175 AAATTTATAATATATATTATATA
1 AAATTTAAAATATATATTATATA
* *
800198 AAATTTAAAATATTTTTTATATA
1 AAATTTAAAATATATATTATATA
800221 TTATATTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (23 bp):
AAATTTAAAATATATATTATATA
Found at i:800205 original size:32 final size:30
Alignment explanation
Indices: 800154--800226 Score: 87
Period size: 32 Copynumber: 2.4 Consensus size: 30
800144 TTTATATTCT
*
800154 TATAT-TTATATAAATTTTAATAA-ATTTATAA
1 TATATATTATATAAAATTTAA-AATATTT-T-A
*
800185 TATATATTATATAAAATTTAAAATATTTTT
1 TATATATTATATAAAATTTAAAATATTTTA
800215 TATATATTATAT
1 TATATATTATAT
800227 TTATATTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
30 12 0.32
31 8 0.21
32 18 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (30 bp):
TATATATTATATAAAATTTAAAATATTTTA
Found at i:800231 original size:11 final size:11
Alignment explanation
Indices: 800217--800253 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
800207 ATATTTTTTA
800217 TATATTATATT
1 TATATTATATT
*
800228 TATATTATTTT
1 TATATTATATT
800239 TATATTATAATT
1 TATATTAT-ATT
800251 TAT
1 TAT
800254 TTTTTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TATATTATATT
Found at i:800242 original size:22 final size:23
Alignment explanation
Indices: 800207--800258 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 23
800197 AAAATTTAAA
800207 ATATTTTTTATATATTAT-ATTT
1 ATATTTTTTATATATTATAATTT
800229 ATATTATTTT-TATATTATAATTT
1 ATATT-TTTTATATATTATAATTT
800252 AT-TTTTT
1 ATATTTTT
800259 ATTTTATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 3 0.11
22 15 0.54
23 10 0.36
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (23 bp):
ATATTTTTTATATATTATAATTT
Found at i:800243 original size:17 final size:19
Alignment explanation
Indices: 800221--800262 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
800211 TTTTTATATA
800221 TTATATTTAT-A-TTATTT
1 TTATATTTATAATTTATTT
800238 TTATA-TTATAATTTATTT
1 TTATATTTATAATTTATTT
800256 TT-TATTT
1 TTATATTT
800263 TATGTTATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.18
17 8 0.36
18 10 0.45
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (19 bp):
TTATATTTATAATTTATTT
Found at i:800341 original size:15 final size:16
Alignment explanation
Indices: 800321--800354 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
800311 TATTTAAAAA
800321 AATAATTTTAT-ATTT
1 AATAATTTTATAATTT
*
800336 AATAATTTTTTAATTT
1 AATAATTTTATAATTT
800352 AAT
1 AAT
800355 TATAAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
AATAATTTTATAATTT
Found at i:802068 original size:2 final size:2
Alignment explanation
Indices: 802061--802085 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
802051 TTTGCAAGAA
802061 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
802086 AGTCAAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:804188 original size:14 final size:14
Alignment explanation
Indices: 804169--804209 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
804159 AATATTATAA
804169 AATATTTTTATATT
1 AATATTTTTATATT
*
804183 AATATTTATA-ATT
1 AATATTTTTATATT
804196 AA-ATTTTTAATATT
1 AATATTTTT-ATATT
804210 TAAATAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 5 0.22
13 6 0.26
14 12 0.52
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
AATATTTTTATATT
Found at i:808949 original size:18 final size:15
Alignment explanation
Indices: 808911--808940 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
808901 AACATTATGC
808911 ACCTCTTGAAGCAAA
1 ACCTCTTGAAGCAAA
808926 ACCTCTTGAAGCAAA
1 ACCTCTTGAAGCAAA
808941 TTGACCTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.13, T:0.20
Consensus pattern (15 bp):
ACCTCTTGAAGCAAA
Found at i:810657 original size:22 final size:22
Alignment explanation
Indices: 810573--810668 Score: 65
Period size: 22 Copynumber: 4.4 Consensus size: 22
810563 ATTCTATTAT
810573 TAAATTAATTTATTTAA-T-A-A
1 TAAA-TAATTTATTTAATTAATA
*** * *
810593 TAAATAAAAAATTAAATTTATA
1 TAAATAATTTATTTAATTAATA
* *
810615 TTAAATTATTTTATTT-TTTAATA
1 -TAAA-TAATTTATTTAATTAATA
810638 TAAATAATTTATTTAATTAATA
1 TAAATAATTTATTTAATTAATA
*
810660 AAAATAATT
1 TAAATAATT
810669 AAAACTTACA
Statistics
Matches: 56, Mismatches: 14, Indels: 10
0.70 0.17 0.12
Matches are distributed among these distances:
19 8 0.14
20 5 0.09
21 10 0.18
22 19 0.34
23 9 0.16
24 5 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
TAAATAATTTATTTAATTAATA
Found at i:811043 original size:15 final size:15
Alignment explanation
Indices: 811023--811052 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
811013 AAATTAATTA
811023 GTTTTAGATTTTTAT
1 GTTTTAGATTTTTAT
*
811038 GTTTTATATTTTTAT
1 GTTTTAGATTTTTAT
811053 ATATAATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (15 bp):
GTTTTAGATTTTTAT
Found at i:811067 original size:19 final size:17
Alignment explanation
Indices: 811043--811083 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 17
811033 TTTATGTTTT
811043 ATATTTTTATATATAATTA
1 ATATTTTTA-ATA-AATTA
811062 ATA-TTTTAATAAATTA
1 ATATTTTTAATAAATTA
811078 AT-TTTT
1 ATATTTT
811084 AATTTTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 10 0.48
17 3 0.14
18 5 0.24
19 3 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATATTTTTAATAAATTA
Found at i:811078 original size:16 final size:16
Alignment explanation
Indices: 811045--811086 Score: 59
Period size: 15 Copynumber: 2.6 Consensus size: 16
811035 TATGTTTTAT
811045 ATTTTTATATATAATTA
1 ATTTTTA-ATATAATTA
811062 ATATTTTAATA-AATTA
1 AT-TTTTAATATAATTA
811078 ATTTTTAAT
1 ATTTTTAAT
811087 TTTAATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.29
16 7 0.29
17 5 0.21
18 5 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTTTTAATATAATTA
Found at i:811100 original size:21 final size:21
Alignment explanation
Indices: 811039--811100 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
811029 GATTTTTATG
*
811039 TTTTATATTTTTAT-ATATAAT
1 TTTTA-ATTTTAATAATATAAT
**
811060 TAAT-ATTTTAATAA-ATTAAT
1 TTTTAATTTTAATAATA-TAAT
811080 TTTTAATTTTAATAATATAAT
1 TTTTAATTTTAATAATATAAT
811101 CATACTAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
19 8 0.25
20 7 0.22
21 16 0.50
22 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTTAATTTTAATAATATAAT
Found at i:811710 original size:19 final size:20
Alignment explanation
Indices: 811660--811712 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
811650 AATGTTAAAA
811660 TTTATAATA-AATATATAATAT
1 TTTA-AATATAAT-TATAATAT
*
811681 TTTAAATATAATTATAATTT
1 TTTAAATATAATTATAATAT
811701 TTTAAA-ATAATT
1 TTTAAATATAATT
811713 TTTTTATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 6 0.20
20 17 0.57
21 7 0.23
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTAAATATAATTATAATAT
Found at i:812532 original size:21 final size:19
Alignment explanation
Indices: 812504--812555 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 19
812494 TTTAAGTATC
812504 AAAAATATTTTAAAGACAAA
1 AAAAATATTTTAAA-ACAAA
*
812524 AACAAATATTTTTCAAACAAA
1 AA-AAATA-TTTTAAAACAAA
812545 AAAAATATTTT
1 AAAAATATTTT
812556 TCAAGTAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 4 0.14
20 7 0.24
21 12 0.41
22 6 0.21
ACGTcount: A:0.60, C:0.08, G:0.02, T:0.31
Consensus pattern (19 bp):
AAAAATATTTTAAAACAAA
Found at i:812550 original size:20 final size:21
Alignment explanation
Indices: 812504--812560 Score: 82
Period size: 20 Copynumber: 2.8 Consensus size: 21
812494 TTTAAGTATC
*
812504 AAAAATA-TTTTAAAGACAAA
1 AAAAATATTTTTCAAGACAAA
812524 AACAAATATTTTTCAA-ACAAA
1 AA-AAATATTTTTCAAGACAAA
812545 AAAAATATTTTTCAAG
1 AAAAATATTTTTCAAG
812561 TAAATACACA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
20 15 0.45
21 12 0.36
22 6 0.18
ACGTcount: A:0.58, C:0.09, G:0.04, T:0.30
Consensus pattern (21 bp):
AAAAATATTTTTCAAGACAAA
Found at i:814237 original size:10 final size:10
Alignment explanation
Indices: 814219--814253 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
814209 TTTCTATTAA
*
814219 TATTAATATT
1 TATTTATATT
814229 TATTTATATT
1 TATTTATATT
814239 TAATTTATATT
1 T-ATTTATATT
814250 TATT
1 TATT
814254 CAAAATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 13 0.57
11 10 0.43
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
TATTTATATT
Found at i:814453 original size:39 final size:38
Alignment explanation
Indices: 814384--814462 Score: 90
Period size: 39 Copynumber: 2.1 Consensus size: 38
814374 ATTAGTTTCT
* * *
814384 TTATTTTAAAATAATAAATTTATATTAATAATTATATAA
1 TTATTTTAAAATAAAAAATTTATATAAATAAATA-ATAA
814423 TTATATTT-AAATAAAAAATGTTAT-TAAATAAATAATAA
1 TTAT-TTTAAAATAAAAAAT-TTATATAAATAAATAATAA
814461 TT
1 TT
814463 TAAATTATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
38 6 0.17
39 22 0.63
40 7 0.20
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (38 bp):
TTATTTTAAAATAAAAAATTTATATAAATAAATAATAA
Found at i:814488 original size:33 final size:34
Alignment explanation
Indices: 814411--814488 Score: 79
Period size: 33 Copynumber: 2.3 Consensus size: 34
814401 ATTTATATTA
*
814411 ATAATTATATAATTATATTTAAATAAAAAATGTT
1 ATAATTAAATAATTATATTTAAATAAAAAATGTT
* ** *
814445 ATTAAATAAATAA-TA-ATTTAAATTATTAAATTTT
1 A-TAATTAAATAATTATATTTAAA-TAAAAAATGTT
814479 ATAATTAAAT
1 ATAATTAAAT
814489 TAAATTACAA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
33 15 0.42
34 12 0.33
35 9 0.25
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (34 bp):
ATAATTAAATAATTATATTTAAATAAAAAATGTT
Found at i:814835 original size:24 final size:23
Alignment explanation
Indices: 814789--814838 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
814779 TTTTACACTT
*
814789 AAAAATAAAATGTTAAAAAGATA
1 AAAAATAAAATATTAAAAAGATA
* *
814812 AAAAATAAAATATATATAATGATA
1 AAAAATAAAATAT-TAAAAAGATA
814836 AAA
1 AAA
814839 TTACACTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 12 0.52
24 11 0.48
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (23 bp):
AAAAATAAAATATTAAAAAGATA
Found at i:815681 original size:15 final size:16
Alignment explanation
Indices: 815661--815693 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
815651 ATTAAAAAAA
815661 TTAAT-ATATTATTTT
1 TTAATAATATTATTTT
*
815676 TTAATAATGTTATTTT
1 TTAATAATATTATTTT
815692 TT
1 TT
815694 CAACATAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (16 bp):
TTAATAATATTATTTT
Found at i:815825 original size:17 final size:19
Alignment explanation
Indices: 815791--815827 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
815781 CGAATGTTAA
*
815791 TTTTATAATTAATTTAATT
1 TTTTATAATTAATATAATT
815810 TTTTA-AATTAA-ATAATT
1 TTTTATAATTAATATAATT
815827 T
1 T
815828 ATGAGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 6 0.35
19 5 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTATAATTAATATAATT
Found at i:816299 original size:29 final size:28
Alignment explanation
Indices: 816265--816332 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 28
816255 CCTATTCGAT
816265 TTAAATTAATTTAAAAATT-TTTATTTAAA
1 TTAAATTAATTTAAAAATTATTTA-TT-AA
*
816294 TTAAATTAATTTTAATAATTATTTATTAA
1 TTAAATTAA-TTTAAAAATTATTTATTAA
*
816323 TTAAAATAAT
1 TTAAATTAAT
816333 ATTTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 1 0.03
29 19 0.54
30 11 0.31
31 4 0.11
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (28 bp):
TTAAATTAATTTAAAAATTATTTATTAA
Found at i:816321 original size:20 final size:18
Alignment explanation
Indices: 816298--816346 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 18
816288 TTTAAATTAA
816298 ATTAATTTTAATAATTATTT
1 ATTAATTTTAATAA-TA-TT
**
816318 ATTAATTAAAATAATATT
1 ATTAATTTTAATAATATT
816336 -TTAATTTTAAT
1 ATTAATTTTAAT
816347 TTAATTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
17 9 0.36
18 2 0.08
19 2 0.08
20 12 0.48
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTAATTTTAATAATATT
Found at i:817523 original size:2 final size:2
Alignment explanation
Indices: 817518--817547 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
817508 TATACACATA
817518 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
817548 GAAAAAGTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:817708 original size:20 final size:21
Alignment explanation
Indices: 817658--817709 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
817648 TTTAATATAT
* *
817658 AATATTATTTTTTATTTTTAA
1 AATATTATTTTTTATTATAAA
* *
817679 ATTATAATTTTTTA-TATAAA
1 AATATTATTTTTTATTATAAA
817699 AATATTATTTT
1 AATATTATTTT
817710 ACATATTAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
AATATTATTTTTTATTATAAA
Found at i:818056 original size:16 final size:15
Alignment explanation
Indices: 818035--818095 Score: 53
Period size: 16 Copynumber: 4.3 Consensus size: 15
818025 AAAATATAGG
818035 ATATTAATATATAAAT
1 ATATTAA-ATATAAAT
818051 ATATTAAA-AT--AT
1 ATATTAAATATAAAT
818063 AT-TT-AATATAAAT
1 ATATTAAATATAAAT
*
818076 -TATTAATATATAAAA
1 ATATTAA-ATATAAAT
818091 ATATT
1 ATATT
818096 TTTATAATAT
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
10 2 0.05
11 4 0.11
12 5 0.14
13 4 0.11
14 3 0.08
15 8 0.22
16 11 0.30
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATATTAAATATAAAT
Found at i:818104 original size:34 final size:31
Alignment explanation
Indices: 818043--818156 Score: 93
Period size: 32 Copynumber: 3.5 Consensus size: 31
818033 GGATATTAAT
* *
818043 ATATAAATATATTAAAATATATTTAATATAA
1 ATATTAATATATAAAAATATATTTAATATAA
*
818074 ATTATTAATATATAAAAATATTTTTATAATATAA
1 A-TATTAATATATAAAAATA-TATT-TAATATAA
* * * **
818108 ATATTTATATATTTATATAAATTTATTTAAAATTT
1 ATA-TTA-ATA--TATAAAAATATATTTAATATAA
818143 ATATTAATATATAA
1 ATATTAATATATAA
818157 CTTTAAATTG
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
31 5 0.08
32 16 0.24
33 8 0.12
34 15 0.23
35 11 0.17
36 3 0.05
37 8 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (31 bp):
ATATTAATATATAAAAATATATTTAATATAA
Found at i:818109 original size:17 final size:17
Alignment explanation
Indices: 818066--818118 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
818056 AAAATATATT
* *
818066 TAATATAAAT-TATTAA
1 TAATATAAATATTTTTA
*
818082 TATATAAAAATATTTTTA
1 TA-ATATAAATATTTTTA
*
818100 TAATATAAATATTTATA
1 TAATATAAATATTTTTA
818117 TA
1 TA
818119 TTTATATAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
16 2 0.07
17 22 0.73
18 6 0.20
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATAAATATTTTTA
Found at i:818111 original size:40 final size:40
Alignment explanation
Indices: 818008--818111 Score: 97
Period size: 40 Copynumber: 2.6 Consensus size: 40
817998 AATCATAATT
* *
818008 AAAATATTATGTATAATA-AAATATAGGATATTAATATATA
1 AAAATATT-TATATAATATAAATATAGAATATTAATATATA
* * * *
818048 AATATATTAAAAT-ATATTTAATATA-AATTATTAATATATA
1 AAAATATTTATATAATA-TAAATATAGAA-TATTAATATATA
*
818088 AAAATATTTTTATAATATAAATAT
1 AAAATATTTATATAATATAAATAT
818112 TTATATATTT
Statistics
Matches: 49, Mismatches: 11, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
38 3 0.06
39 3 0.06
40 40 0.82
41 3 0.06
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (40 bp):
AAAATATTTATATAATATAAATATAGAATATTAATATATA
Found at i:818377 original size:30 final size:28
Alignment explanation
Indices: 818343--818400 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
818333 AACCGACAAG
818343 AATATTATATAAAAATAAAAAATAATATAA
1 AATATTATAT-AAAAT-AAAAATAATATAA
*
818373 AATATTATATAACATAAAAATAATATAA
1 AATATTATATAAAATAAAAATAATATAA
818401 TTACAATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 13 0.48
29 4 0.15
30 10 0.37
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (28 bp):
AATATTATATAAAATAAAAATAATATAA
Found at i:818451 original size:13 final size:13
Alignment explanation
Indices: 818433--818458 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
818423 TCATGATTTA
818433 ATTTTATTTAAAT
1 ATTTTATTTAAAT
818446 ATTTTATTTAAAT
1 ATTTTATTTAAAT
818459 TCGATTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTTATTTAAAT
Found at i:818570 original size:8 final size:8
Alignment explanation
Indices: 818557--818593 Score: 56
Period size: 8 Copynumber: 4.4 Consensus size: 8
818547 TATAAGTTTA
818557 ATATAAAT
1 ATATAAAT
818565 ATATAAAT
1 ATATAAAT
818573 ATATAAAAAT
1 ATAT--AAAT
818583 ATATAAAT
1 ATATAAAT
818591 ATA
1 ATA
818594 AATTAATCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 19 0.70
10 8 0.30
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (8 bp):
ATATAAAT
Found at i:818869 original size:21 final size:19
Alignment explanation
Indices: 818836--818877 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
818826 ATTTTAAATC
*
818836 AAATATAATATTTTTATTTA
1 AAATATAA-AATTTTATTTA
818856 AAATAATAAAATTTTATTTA
1 AAAT-ATAAAATTTTATTTA
818876 AA
1 AA
818878 TTTAATTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AAATATAAAATTTTATTTA
Found at i:819247 original size:21 final size:19
Alignment explanation
Indices: 819192--819250 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 19
819182 CGAGTAATTC
819192 ATTTAT-TTTTATAAATTTA
1 ATTTATATTTT-TAAATTTA
*
819211 ATTTATATTAAATTAAATTTAA
1 ATTTATATT--TTTAAATTT-A
819233 ATTTAATATTTTTAAATT
1 ATTT-ATATTTTTAAATT
819251 AGATTAGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
19 6 0.18
20 2 0.06
21 14 0.42
22 6 0.18
23 5 0.15
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTTATATTTTTAAATTTA
Found at i:819323 original size:21 final size:21
Alignment explanation
Indices: 819299--819340 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
819289 TAAAAATATT
*
819299 ATTATTTAAA-ATTAATTATAA
1 ATTATATAAATATTAA-TATAA
819320 ATTATATAAATATTAATATAA
1 ATTATATAAATATTAATATAA
819341 CAAATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTATATAAATATTAATATAA
Found at i:819525 original size:2 final size:2
Alignment explanation
Indices: 819520--819546 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
819510 AGGTGAAATC
819520 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
819547 TCATATAGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:820155 original size:24 final size:24
Alignment explanation
Indices: 820123--820172 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
820113 CTCATGAGGC
*
820123 ATTCATTATTCGAACTTCAAACTT
1 ATTCATTATTCGAACTCCAAACTT
820147 ATTCATTATTCGAACTCCAAACTT
1 ATTCATTATTCGAACTCCAAACTT
820171 AT
1 AT
820173 AGTTTTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.34, C:0.22, G:0.04, T:0.40
Consensus pattern (24 bp):
ATTCATTATTCGAACTCCAAACTT
Found at i:820844 original size:15 final size:16
Alignment explanation
Indices: 820809--820845 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
820799 ATAAAATTTT
820809 TATTAATTTAGTTTGA
1 TATTAATTTAGTTTGA
820825 T-TTAATTTAGTTT-A
1 TATTAATTTAGTTTGA
820839 TATTAAT
1 TATTAAT
820846 AATTAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 2 0.10
15 17 0.85
16 1 0.05
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.59
Consensus pattern (16 bp):
TATTAATTTAGTTTGA
Found at i:915635 original size:28 final size:26
Alignment explanation
Indices: 915576--915637 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 26
915566 TAAATTTAAG
* *
915576 ATATCTTTATATCATATTATATTTTA
1 ATATATTTATATCATAATATATTTTA
915602 AT-TATTT-TATCTATAATATATTATGTA
1 ATATATTTATATC-ATAATATATT-T-TA
915629 ATATATTTA
1 ATATATTTA
915638 ATATTAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
24 4 0.14
25 13 0.45
26 3 0.10
27 4 0.14
28 5 0.17
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (26 bp):
ATATATTTATATCATAATATATTTTA
Found at i:915971 original size:19 final size:18
Alignment explanation
Indices: 915949--916009 Score: 63
Period size: 19 Copynumber: 3.4 Consensus size: 18
915939 TAAATTATTA
915949 TTTAAATAATAAAATAAAT
1 TTTAAAT-ATAAAATAAAT
* *
915968 TTTAAATTTAATTATAAAT
1 TTTAAATATAA-AATAAAT
*
915987 ATT-AATATAAAAT-AAT
1 TTTAAATATAAAATAAAT
916003 TTTAAAT
1 TTTAAAT
916010 TTTTTATTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
16 5 0.15
17 5 0.15
18 9 0.26
19 15 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TTTAAATATAAAATAAAT
Found at i:915973 original size:31 final size:31
Alignment explanation
Indices: 915938--915997 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
915928 ATTGACTTAG
*
915938 TTAAATTATTATT-TAAATAATAAAATAAATT
1 TTAAATT-TAATTATAAATAATAAAATAAATT
* *
915969 TTAAATTTAATTATAAATATTAATATAAA
1 TTAAATTTAATTATAAATAATAAAATAAA
915998 ATAATTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 4 0.16
31 21 0.84
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (31 bp):
TTAAATTTAATTATAAATAATAAAATAAATT
Found at i:917120 original size:2 final size:2
Alignment explanation
Indices: 917115--917142 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
917105 AAAAAAATCA
917115 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
917143 TTAATACAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:920343 original size:14 final size:14
Alignment explanation
Indices: 920324--920352 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
920314 CTTAAAGCAA
920324 ACATATATATATAT
1 ACATATATATATAT
920338 ACATATATATATAT
1 ACATATATATATAT
920352 A
1 A
920353 TATCTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
ACATATATATATAT
Found at i:920372 original size:2 final size:2
Alignment explanation
Indices: 920326--920355 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
920316 TAAAGCAAAC
*
920326 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
920356 CTTATTTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:921343 original size:6 final size:6
Alignment explanation
Indices: 921322--921361 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
921312 AAGATTTAAG
921322 TTTTATT TTGTTAT TTTTAT TTTTA- TTTTAT TTTTAT TTT
1 TTTTA-T TT-TTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
921362 CTGAGTCTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
5 5 0.16
6 18 0.58
7 5 0.16
8 3 0.10
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:921352 original size:11 final size:11
Alignment explanation
Indices: 921322--921361 Score: 53
Period size: 11 Copynumber: 3.4 Consensus size: 11
921312 AAGATTTAAG
921322 TTTTATTTTGTTA
1 TTTTA-TTT-TTA
921335 TTTTTATTTTTA
1 -TTTTATTTTTA
921347 TTTTATTTTTA
1 TTTTATTTTTA
921358 TTTT
1 TTTT
921362 CTGAGTCTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 15 0.58
12 3 0.12
13 3 0.12
14 5 0.19
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:923541 original size:2 final size:2
Alignment explanation
Indices: 923534--923565 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
923524 AACTGAATAC
923534 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
923566 TTAATTTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:925998 original size:22 final size:22
Alignment explanation
Indices: 925970--926014 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
925960 TTATAAATTC
925970 AAATTATGATTAAA-ATT-ATTAA
1 AAATTAT--TTAAATATTAATTAA
925992 AAATTATTTAAATATTAATTAA
1 AAATTATTTAAATATTAATTAA
926014 A
1 A
926015 TAACTTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.24
21 3 0.14
22 13 0.62
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
AAATTATTTAAATATTAATTAA
Found at i:930393 original size:16 final size:16
Alignment explanation
Indices: 930354--930395 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
930344 CATTATATAA
930354 ATAAAAAAATAATTTT
1 ATAAAAAAATAATTTT
**
930370 ATTTAAAAATATATTTT
1 ATAAAAAAATA-ATTTT
930387 -TAAAAAAAT
1 ATAAAAAAAT
930396 TAATGAATAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAAAAAAATAATTTT
Found at i:931831 original size:21 final size:20
Alignment explanation
Indices: 931783--931838 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 20
931773 AATTTAATAA
931783 ATTTTAAAAATAA-AAAATT
1 ATTTTAAAAATAATAAAATT
* *
931802 AATTAAAAATATAATAAAATT
1 ATTTTAAAA-ATAATAAAATT
*
931823 TTTTTAAAAAATAATA
1 ATTTT-AAAAATAATA
931839 TAATGATAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
19 7 0.24
20 4 0.14
21 14 0.48
22 4 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTTTAAAAATAATAAAATT
Found at i:931838 original size:26 final size:24
Alignment explanation
Indices: 931809--931872 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 24
931799 ATTAATTAAA
**
931809 AATATAATAAAATTTTTTTAAAAAAT
1 AATATAATAAAA-TTCATT-AAAAAT
931835 AATATAATGATAAATTCATTAAAAAT
1 AATATAAT-A-AAATTCATTAAAAAT
931861 AATATAATAAAA
1 AATATAATAAAA
931873 CAATCATAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
24 3 0.09
25 1 0.03
26 22 0.65
27 5 0.15
28 3 0.09
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (24 bp):
AATATAATAAAATTCATTAAAAAT
Found at i:931879 original size:26 final size:26
Alignment explanation
Indices: 931829--931879 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
931819 AATTTTTTTA
* *
931829 AAAAATAATATAATGATAAATTCATT
1 AAAAATAATATAATGAAAAAATCATT
931855 AAAAATAATATAAT-AAAACAATCAT
1 AAAAATAATATAATGAAAA-AATCAT
931880 AACTATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.29
Consensus pattern (26 bp):
AAAAATAATATAATGAAAAAATCATT
Found at i:932079 original size:20 final size:20
Alignment explanation
Indices: 932054--932103 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
932044 TAGTTAAATC
932054 AATAAAAATT-AATTTAATT
1 AATAAAAATTAAATTTAATT
*
932073 AATTAAAAATTAAATTTTATT
1 AA-TAAAAATTAAATTTAATT
932094 AATAAAAATT
1 AATAAAAATT
932104 GATTACATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 2 0.07
20 16 0.57
21 10 0.36
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
AATAAAAATTAAATTTAATT
Found at i:932145 original size:20 final size:20
Alignment explanation
Indices: 932120--932158 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
932110 ATATTTATCA
*
932120 AAATTTTACTTATAATTAAT
1 AAATTTTAATTATAATTAAT
*
932140 AAATTTTAATTTTAATTAA
1 AAATTTTAATTATAATTAA
932159 ATTAAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
AAATTTTAATTATAATTAAT
Found at i:932168 original size:25 final size:25
Alignment explanation
Indices: 932121--932178 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 25
932111 TATTTATCAA
* *
932121 AATTTTACTTATAATTAATAAATTTT
1 AATTTTAATTATAATTAA-AAAATTT
932147 AATTTTAATTA-AATTAAAAAATTT
1 AATTTTAATTATAATTAAAAAATTT
932171 -ATTTTAAT
1 AATTTTAAT
932179 CGATAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 8 0.27
24 6 0.20
25 6 0.20
26 10 0.33
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
AATTTTAATTATAATTAAAAAATTT
Found at i:933614 original size:8 final size:8
Alignment explanation
Indices: 933601--933626 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
933591 TTAATTTAAA
933601 TTAAATTT
1 TTAAATTT
933609 TTAAATTT
1 TTAAATTT
933617 TTAAATTT
1 TTAAATTT
933625 TT
1 TT
933627 TTTAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
TTAAATTT
Found at i:933636 original size:17 final size:19
Alignment explanation
Indices: 933595--933645 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 19
933585 ATTAAGTTAA
*
933595 TTTAAATTAAATTTTTAAATT
1 TTTAAATT-ATTTTTTAAA-T
933616 TTTAAATT-TTTTTTAAA-
1 TTTAAATTATTTTTTAAAT
933633 TTTAAATTATTTT
1 TTTAAATTATTTT
933646 AATTTCGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 8 0.29
18 4 0.14
19 8 0.29
21 8 0.29
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTAAATTATTTTTTAAAT
Found at i:933645 original size:19 final size:19
Alignment explanation
Indices: 933593--933645 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
933583 GGATTAAGTT
**
933593 AATTTAAATTAAATTTTTA
1 AATTTAAATTATTTTTTTA
933612 AATTTTTAAA-T-TTTTTTTA
1 AA--TTTAAATTATTTTTTTA
933631 AATTTAAATTATTTT
1 AATTTAAATTATTTT
933646 AATTTCGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
17 6 0.21
18 1 0.04
19 14 0.50
20 1 0.04
21 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
AATTTAAATTATTTTTTTA
Found at i:933970 original size:17 final size:16
Alignment explanation
Indices: 933884--933979 Score: 86
Period size: 16 Copynumber: 5.9 Consensus size: 16
933874 TTGTTAGGCC
* *
933884 TTTTAAGTTTATATTA
1 TTTTAAATTTAAATTA
* * *
933900 TTTCAAAATTAAGTTA
1 TTTTAAATTTAAATTA
*
933916 TTTTAAATTTAGAA-CA
1 TTTTAAATTTA-AATTA
*
933932 TTATAAATTTAAATTA
1 TTTTAAATTTAAATTA
* *
933948 TTTTAAGTTTAAGTTA
1 TTTTAAATTTAAATTA
933964 TTTTTAAATTTAAATT
1 -TTTTAAATTTAAATT
933980 TATTATCGTC
Statistics
Matches: 61, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
15 2 0.03
16 45 0.74
17 14 0.23
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (16 bp):
TTTTAAATTTAAATTA
Found at i:934037 original size:29 final size:27
Alignment explanation
Indices: 934005--934070 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 27
933995 ATTTATTTTT
934005 TTAATAAATTAAATAAATTTAAA-TTTAAA
1 TTAATAAATTAAAT---TTTAAATTTTAAA
*
934034 TTAATTAATTAAATTTTAAATTTTAAA
1 TTAATAAATTAAATTTTAAATTTTAAA
934061 -TAA-AAATTAA
1 TTAATAAATTAA
934071 TAGAATTACA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 6 0.18
26 9 0.26
27 6 0.18
29 13 0.38
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
TTAATAAATTAAATTTTAAATTTTAAA
Found at i:934039 original size:25 final size:27
Alignment explanation
Indices: 934002--934061 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 27
933992 ATTATTTATT
* *
934002 TTTTTAATAAATTAAATAAA-TTTAAA
1 TTTTAAATTAATTAAATAAATTTTAAA
*
934028 -TTTAAATTAATTAATTAAATTTTAAA
1 TTTTAAATTAATTAAATAAATTTTAAA
934054 TTTTAAAT
1 TTTTAAAT
934062 AAAAATTAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 16 0.55
26 6 0.21
27 7 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (27 bp):
TTTTAAATTAATTAAATAAATTTTAAA
Found at i:934051 original size:20 final size:21
Alignment explanation
Indices: 934009--934064 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 21
933999 ATTTTTTTAA
934009 TAAATTAAATAAATTTAAATT
1 TAAATTAAATAAATTTAAATT
*
934030 TAAATT-AATTAA-TTAAATTT
1 TAAATTAAATAAATTTAAA-TT
934050 TAAATTTTAAATAAA
1 TAAA--TTAAATAAA
934065 AATTAATAGA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 5 0.17
20 11 0.38
21 6 0.21
22 2 0.07
23 5 0.17
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TAAATTAAATAAATTTAAATT
Found at i:935727 original size:2 final size:2
Alignment explanation
Indices: 935722--935758 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
935712 CAATACATGC
* *
935722 AT AT AT TT AT AT AT TT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
935759 AAAGAAACTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:937383 original size:25 final size:27
Alignment explanation
Indices: 937352--937418 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 27
937342 AGATATGTTT
937352 AATATTAATATATTTTA-TTAATATAA
1 AATATTAATATATTTTATTTAATATAA
* * * *
937378 AA-ATTATTAAATTATATTTATTATAA
1 AATATTAATATATTTTATTTAATATAA
*
937404 AATATT-ATTTATTTT
1 AATATTAATATATTTT
937419 TAAATCTTAA
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
25 11 0.35
26 17 0.55
27 3 0.10
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
AATATTAATATATTTTATTTAATATAA
Found at i:937400 original size:17 final size:18
Alignment explanation
Indices: 937380--937423 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
937370 TAATATAAAA
937380 ATTATTAAATTA-TATTT
1 ATTATTAAATTATTATTT
*
937397 ATTA-TAAAATATTATTT
1 ATTATTAAATTATTATTT
*
937414 ATTTTTAAAT
1 ATTATTAAAT
937424 CTTAAAGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 6 0.27
17 12 0.55
18 4 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTATTAAATTATTATTT
Found at i:941382 original size:17 final size:17
Alignment explanation
Indices: 941356--941389 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
941346 ACCGTAAATT
*
941356 TTTTATAAAAAATTAAA
1 TTTTAAAAAAAATTAAA
*
941373 TTTTAAAAAATATTAAA
1 TTTTAAAAAAAATTAAA
941390 CATTATTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTTTAAAAAAAATTAAA
Found at i:941428 original size:16 final size:16
Alignment explanation
Indices: 941399--941433 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
941389 ACATTATTTA
*
941399 ATATTAATATTTAAAT
1 ATATTAATAATTAAAT
*
941415 ATATTTATAATTAAAT
1 ATATTAATAATTAAAT
941431 ATA
1 ATA
941434 AATAATATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
ATATTAATAATTAAAT
Found at i:941494 original size:15 final size:15
Alignment explanation
Indices: 941470--941503 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
941460 TAAATTATTA
* *
941470 AATTTTATATAATTT
1 AATTTAATATAAATT
941485 AATTTAATATAAATT
1 AATTTAATATAAATT
941500 AATT
1 AATT
941504 ATTAGATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTTAATATAAATT
Found at i:942024 original size:16 final size:17
Alignment explanation
Indices: 942003--942038 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
941993 TATGTCATAA
*
942003 TTATATTTA-ATTAATT
1 TTATATTTATATAAATT
942019 TTATATTTATATAAATT
1 TTATATTTATATAAATT
942036 TTA
1 TTA
942039 ATATGATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATATTTATATAAATT
Found at i:943447 original size:17 final size:16
Alignment explanation
Indices: 943421--943454 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
943411 AAAAAATAAT
943421 TAAAAATATATATTTA
1 TAAAAATATATATTTA
943437 TAAAAATTATATATTTA
1 TAAAAA-TATATATTTA
943454 T
1 T
943455 TTATTACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAAAAATATATATTTA
Found at i:945265 original size:17 final size:17
Alignment explanation
Indices: 945243--945278 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
945233 ATCAGTCAAT
*
945243 TATTTAAATTTGTTAAA
1 TATTTAAATTTATTAAA
945260 TATTTAAATTTATTAAA
1 TATTTAAATTTATTAAA
945277 TA
1 TA
945279 ATTTTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (17 bp):
TATTTAAATTTATTAAA
Found at i:946567 original size:24 final size:24
Alignment explanation
Indices: 946534--946582 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
946524 GAGTTTGGCC
*
946534 TAAATTTTATATTAATAAAGTAAT
1 TAAATATTATATTAATAAAGTAAT
946558 TAAATATTATATTAATAAAGTAAT
1 TAAATATTATATTAATAAAGTAAT
946582 T
1 T
946583 TTAATATGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (24 bp):
TAAATATTATATTAATAAAGTAAT
Found at i:947457 original size:16 final size:17
Alignment explanation
Indices: 947433--947470 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
947423 AAATAAATAA
* *
947433 TAAAAATTTAAT-TTTT
1 TAAATATTTAATAATTT
947449 TAAATATTTAATAATTT
1 TAAATATTTAATAATTT
947466 TAAAT
1 TAAAT
947471 TTATCTATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TAAATATTTAATAATTT
Found at i:947711 original size:13 final size:13
Alignment explanation
Indices: 947693--947723 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
947683 TATTTTTTTA
*
947693 AATATTTATATTT
1 AATATTTAAATTT
947706 AATATTTAAATTT
1 AATATTTAAATTT
947719 AATAT
1 AATAT
947724 AATTATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
AATATTTAAATTT
Found at i:947925 original size:18 final size:18
Alignment explanation
Indices: 947902--947936 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
947892 ACGTTTATTA
*
947902 ATTTTTAATAATTAAATT
1 ATTTTTAATAAATAAATT
*
947920 ATTTTTATTAAATAAAT
1 ATTTTTAATAAATAAAT
947937 AATTATTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTTTTAATAAATAAATT
Found at i:947944 original size:29 final size:28
Alignment explanation
Indices: 947907--947992 Score: 77
Period size: 29 Copynumber: 2.9 Consensus size: 28
947897 TATTAATTTT
*
947907 TAATAATTAAATTATTTTTATTAAATAAA
1 TAATTATTAAATTATTTTTATTAAAT-AA
* *
947936 TAATTATTAAATTTATATTAATATTAAATTA
1 TAATTATTAAA-TTAT-TT-TTATTAAATAA
947967 -AATTATT-AATTAATTTTTAATTAAAT
1 TAATTATTAAATT-ATTTTT-ATTAAAT
947993 CGAATTATCT
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
27 1 0.02
28 11 0.23
29 14 0.29
30 11 0.23
31 3 0.06
32 8 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (28 bp):
TAATTATTAAATTATTTTTATTAAATAA
Found at i:948369 original size:21 final size:21
Alignment explanation
Indices: 948313--948369 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
948303 TATATTAATA
948313 AAAAATAATTAATAATTATTTTT
1 AAAAAT-ATTAA-AATTATTTTT
**
948336 AAAAATAAAAAAATTATTTTT
1 AAAAATATTAAAATTATTTTT
* *
948357 CAAAATTTTAAAA
1 AAAAATATTAAAA
948370 AACAAAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
21 19 0.68
22 3 0.11
23 6 0.21
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAATATTAAAATTATTTTT
Found at i:948524 original size:15 final size:16
Alignment explanation
Indices: 948491--948540 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
948481 TAAAAATATT
* **
948491 TTTTATTATTTTATTA
1 TTTTATTATTTAAAAA
948507 TTTTATT-TTTAAAAA
1 TTTTATTATTTAAAAA
*
948522 -TTTATTATTTTAAAA
1 TTTTATTATTTAAAAA
948537 TTTT
1 TTTT
948541 TAATTATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 6 0.21
15 12 0.43
16 10 0.36
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTATTATTTAAAAA
Found at i:949008 original size:46 final size:47
Alignment explanation
Indices: 948908--949009 Score: 113
Period size: 46 Copynumber: 2.2 Consensus size: 47
948898 TGGTAATAAT
* * * *
948908 TTTTTAATTTATTATAATTTATATAATATTATTTAAATTATTTTTAA
1 TTTTTAATTTATTATAATTTAAATAATATTATATAAATAATTATTAA
948955 TTTTTAATTT-TTATAATTTAAATTAAT-TTA-ATAAATAAATTATT-A
1 TTTTTAATTTATTATAATTTAAA-TAATATTATATAAAT-AATTATTAA
949000 TTTATTAATT
1 TTT-TTAATT
949010 AAAATAATAT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
45 9 0.19
46 25 0.52
47 14 0.29
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (47 bp):
TTTTTAATTTATTATAATTTAAATAATATTATATAAATAATTATTAA
Found at i:951254 original size:16 final size:16
Alignment explanation
Indices: 951233--951263 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
951223 TATGTTATAT
951233 TTTTTATATCATATTA
1 TTTTTATATCATATTA
*
951249 TTTTTATATTATATT
1 TTTTTATATCATATT
951264 TTTAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTTATATCATATTA
Found at i:951441 original size:12 final size:12
Alignment explanation
Indices: 951426--951451 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
951416 TTATATTTTG
951426 AGATAGATCATT
1 AGATAGATCATT
951438 AGATAGATCATT
1 AGATAGATCATT
951450 AG
1 AG
951452 CCTCCAATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (12 bp):
AGATAGATCATT
Found at i:951747 original size:13 final size:13
Alignment explanation
Indices: 951729--951765 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
951719 AAATACGATA
951729 TAATATGAATAAC
1 TAATATGAATAAC
951742 TAATATGAATAAC
1 TAATATGAATAAC
951755 TAATATGAATA
1 TAATATGAATA
951766 TAATAATACG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.32
Consensus pattern (13 bp):
TAATATGAATAAC
Found at i:952482 original size:2 final size:2
Alignment explanation
Indices: 952477--952502 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
952467 AAAAACGTTC
952477 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
952503 GGAGGGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:955485 original size:5 final size:5
Alignment explanation
Indices: 955470--955535 Score: 64
Period size: 5 Copynumber: 13.2 Consensus size: 5
955460 CGTGATAGTG
* * * *
955470 ATATAA ATATA ATATA AGA-A AAATA ATTAAA ATATA ATATA ATAAA ATATA
1 ATAT-A ATATA ATATA ATATA ATATA A-TATA ATATA ATATA ATATA ATATA
955521 ATAT- ATATA ATATA A
1 ATATA ATATA ATATA A
955536 ATTTTTAAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
4 7 0.14
5 36 0.72
6 7 0.14
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (5 bp):
ATATA
Found at i:955824 original size:10 final size:9
Alignment explanation
Indices: 955792--955872 Score: 54
Period size: 9 Copynumber: 8.0 Consensus size: 9
955782 ATATTTATTG
955792 TAAATTTAA
1 TAAATTTAA
*
955801 TAAATTAAACA
1 TAAATT-TA-A
*
955812 TAATTTTTAA
1 TAA-ATTTAA
955822 TAAATTTAA
1 TAAATTTAA
955831 TAAATATTAAA
1 TAAAT-TT-AA
*
955842 TAAAATTATTTA
1 T-AAA-T-TTAA
955854 TAAATTTAA
1 TAAATTTAA
955863 TAAATATTAA
1 TAAAT-TTAA
955873 ATATAATTAC
Statistics
Matches: 58, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
9 24 0.41
10 12 0.21
11 11 0.19
12 7 0.12
13 4 0.07
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (9 bp):
TAAATTTAA
Found at i:955841 original size:16 final size:16
Alignment explanation
Indices: 955822--955879 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
955812 TAATTTTTAA
*
955822 TAAATTTAATAAATAT
1 TAAATATAATAAATAT
* * *
955838 TAAATAAAAT-TATTT
1 TAAATATAATAAATAT
*
955853 ATAAATTTAATAAATAT
1 -TAAATATAATAAATAT
955870 TAAATATAAT
1 TAAATATAAT
955880 TACTCGTAAA
Statistics
Matches: 31, Mismatches: 9, Indels: 4
0.70 0.20 0.09
Matches are distributed among these distances:
15 3 0.10
16 25 0.81
17 3 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TAAATATAATAAATAT
Found at i:955857 original size:32 final size:31
Alignment explanation
Indices: 955792--955905 Score: 133
Period size: 32 Copynumber: 3.6 Consensus size: 31
955782 ATATTTATTG
*
955792 TAAATTTAATAA-ATTAAACATAATT-TTTAA
1 TAAATTTAATAATATTAAATATAATTATTT-A
*
955822 TAAATTTAATAAATATTAAATAAAATTATTTA
1 TAAATTTAAT-AATATTAAATATAATTATTTA
* **
955854 TAAATTTAATAAATATTAAATATAATTACTCG
1 TAAATTTAAT-AATATTAAATATAATTATTTA
955886 TAAATTTAATAATCATTAAA
1 TAAATTTAATAAT-ATTAAA
955906 AAATTTTACT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
30 10 0.14
31 5 0.07
32 56 0.76
33 3 0.04
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (31 bp):
TAAATTTAATAATATTAAATATAATTATTTA
Found at i:955864 original size:21 final size:25
Alignment explanation
Indices: 955825--955871 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 25
955815 TTTTTAATAA
955825 ATTTAATAAATATTAAATAAA-ATT
1 ATTTAATAAATATTAAATAAATATT
955849 ATTT-ATAAAT-TT-AATAAATATT
1 ATTTAATAAATATTAAATAAATATT
955871 A
1 A
955872 AATATAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 6 0.27
22 6 0.27
23 6 0.27
24 4 0.18
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
ATTTAATAAATATTAAATAAATATT
Done.