Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold50
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2541760
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Warning! 26494 characters in sequence are not A, C, G, or T
File 4 of 16
Found at i:654538 original size:210 final size:211
Alignment explanation
Indices: 654207--654606 Score: 626
Period size: 210 Copynumber: 1.9 Consensus size: 211
654197 GTGCGTCTTG
654207 CTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCATCCTGCTC
1 CTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCATCCTGCTC
* *
654272 CTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCCTTAAAAGGCATTATGCTCTTTGAGGACT
66 CTTGAGGACTGGAGAGTGCCACCAACTCGTGTGGGCCTTAAAAGGCATCATGCTCTTTGAGGACT
* *
654337 -GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTAAAGGGTGA
131 AGAAA-ATGCCACCAACTTGCGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTAAAGGGTGA
654401 AAAGAGAGAACGTCCTA
195 AAAGAGAGAACGTCCTA
* * *
654418 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCATCCTGCTC
1 CTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCATCCTGCTC
* * * * * *
654482 TTTGAGGACT-GAGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
66 CTTGAGGACTGGAG-AGTGCCACCAACTCGTGTGGGCCTTAAAAGGCATCATGCTCTTTGAGGAC
* *
654546 TAGAAAATGCCACCAACTTGCGTGGGCTTTGAAAGGGGTCCTGCTCTTTGAGGACTAAAGG
130 TAGAAAATGCCACCAACTTGCGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTAAAGG
654607 TGCCACCAAC
Statistics
Matches: 172, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
209 3 0.02
210 125 0.73
211 44 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (211 bp):
CTCTTTGAGGACTACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCATCCTGCTC
CTTGAGGACTGGAGAGTGCCACCAACTCGTGTGGGCCTTAAAAGGCATCATGCTCTTTGAGGACT
AGAAAATGCCACCAACTTGCGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTAAAGGGTGAA
AAGAGAGAACGTCCTA
Found at i:654635 original size:54 final size:55
Alignment explanation
Indices: 654411--654660 Score: 335
Period size: 55 Copynumber: 4.5 Consensus size: 55
654401 AAAGAGAGAA
*
654411 CGTCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGG
1 CGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT------AAAAGG
* *
654472 CATCCTGCTCTTTGAGGACTGAGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 CGTCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
** * *
654527 CGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTGAAAGG
1 CGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
*
654582 GGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 CGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
*
654636 CATCCTGCTCTTTGAGGACTA-AAGG
1 CGTCCTGCTCTTTGAGGACTAGAAGG
654661 GTGAAGGGAA
Statistics
Matches: 174, Mismatches: 13, Indels: 11
0.88 0.07 0.06
Matches are distributed among these distances:
54 56 0.32
55 72 0.41
61 42 0.24
62 4 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (55 bp):
CGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
Found at i:654651 original size:109 final size:112
Alignment explanation
Indices: 654413--654656 Score: 352
Period size: 109 Copynumber: 2.2 Consensus size: 112
654403 AGAGAGAACG
* ** *
654413 TCCTACTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTAAAAGG---AGG-ATCCT
* *
654478 GCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
62 GCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
*
654529 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTGAAAGG-GG-TCCTGCTC
1 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTAAAAGGAGGATCCTGCTC
654592 TTTGAGGACT-A-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
66 TTTGAGGACTGAGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
654638 TCCTGCTCTTTGAGGACTA
1 TCCTGCTCTTTGAGGACTA
654657 AAGGGTGAAG
Statistics
Matches: 120, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
108 2 0.02
109 50 0.42
110 18 0.15
112 2 0.02
116 48 0.40
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (112 bp):
TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTAAAAGGAGGATCCTGCTC
TTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
Found at i:654688 original size:264 final size:264
Alignment explanation
Indices: 654205--654869 Score: 913
Period size: 264 Copynumber: 2.5 Consensus size: 264
654195 AAGTGCGTCT
*
654205 TGCTCTTTGAGGACT-ACAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGGCATCCTG
1 TGCTCTTTGAGGACTGA-GAAGTGCCACCAACTTGTGTGGGCTTT-----G--AAAGGCATCCTG
* * * * * * *
654269 CTCCTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCCTTAAAAGGCATTATGCTCTTTGAGG
58 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCATGCTCTTTGAGG
* *
654334 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTAAAGGGT
123 ACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAGGGT
*
654399 GAAAAGAGAGAACGTCCTACTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAA
187 GAAAAGAAAGAACGTCCTACTCTTTGAGGACTGAGAA-GTGCCACCAACTTGTGTGGGCTTTAAA
*
654463 AGGAAAAGGCATCC
251 AGGAAAAGGCATCA
*
654477 TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
1 TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGA
** * * * *
654542 GGACTAGAAAATGCCACCAACTTGCGTGGGCTTTGAAAGGGGTCCTGCTCTTTGAGGACTAAAGG
66 GGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCATGCTCTTTGAGGACTAAAGG
* **
654607 TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGAAGGGAAA
131 TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAGGGTGAAAAGAAA
** * * *
654672 GGGCGTCCTGCTCTTTGAGGACTGGGAATTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
196 GAACGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
654737 ATCA
261 ATCA
* * * *
654741 TGCACTTTGAGGATTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTTTTTGA
1 TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGA
* * *
654806 GGACTA-AAGGTGCCACTAATTTGTGTGGGCTTTAAAAGGCGTCTTGCTCTTTGAGGACTAAAGG
66 GGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCATGCTCTTTGAGGACTAAAGG
654870 GTGAAAGGAG
Statistics
Matches: 351, Mismatches: 40, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
263 50 0.14
264 189 0.54
265 69 0.20
267 1 0.00
272 41 0.12
273 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (264 bp):
TGCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGA
GGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCATGCTCTTTGAGGACTAAAGG
TGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGGACTAAAGGGTGAAAAGAAA
GAACGTCCTACTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
ATCA
Found at i:654960 original size:209 final size:207
Alignment explanation
Indices: 654461--654969 Score: 724
Period size: 209 Copynumber: 2.5 Consensus size: 207
654451 GTGGGCTTTA
* * *
654461 AAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAGAAGTGCCACCAACTTGTGTGGGCTTT----G
1 AAAGGAAAGGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* **
654522 AAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTGAAAGGGGTCC
66 AAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTCGCGTGGGCTTTGAAAGGCATCC
654587 TGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
131 TGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
654652 GACTAAAGGGTG
196 GACTAAAGGGTG
* *
654664 AAGGGAAAGGGCGTCCTGCTCTTTGAGGACTGGGAATTGCCACCAACTTGTGTGGGCTTTAAAAG
1 AAAGGAAAGGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-
* * * * * *
654729 GAAAAGGCATCATGCACTTTGAGGA-TTGAGAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCA
65 G-AAAGGCGTCCTGCTCTTTGAGGACTAGA-AAATGCCACCAACTCGCGTGGGCTTTGAAAGGCA
* * * * *
654793 TCCTGCTTTTTGAGGACTAAAGGTGCCACTAATTTGTGTGGGCTTTAAAAGGCGTCTTGCTCTTT
128 TCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTT
654858 GAGGACTAAAGGGTG
193 GAGGACTAAAGGGTG
* *
654873 AAAGGAGAGGGCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAA
1 AAAGGAAAGGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAA
* *
654938 GAGAAGGTGTCCTACTCTTTGAGGACT-GAAAA
65 GA-AAGGCGTCCTGCTCTTTGAGGACTAGAAAA
654970 GCGAAAGGAG
Statistics
Matches: 267, Mismatches: 29, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
203 55 0.21
208 7 0.03
209 200 0.75
210 5 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (207 bp):
AAAGGAAAGGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
AAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTCGCGTGGGCTTTGAAAGGCATCC
TGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
GACTAAAGGGTG
Found at i:668422 original size:28 final size:28
Alignment explanation
Indices: 668382--668457 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 28
668372 AAATAAAATT
** **
668382 GGGGTTGGAGTATCCCCTTTGAGGTAAC
1 GGGGTTGGAGTATCCCCGATGAAATAAC
668410 GGGGTTGGAGTATCCCCGATGAAATAAC
1 GGGGTTGGAGTATCCCCGATGAAATAAC
* *
668438 GAGGTTGGAGTATCCTCGAT
1 GGGGTTGGAGTATCCCCGAT
668458 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.26
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCCGATGAAATAAC
Found at i:668918 original size:51 final size:51
Alignment explanation
Indices: 668440--668928 Score: 317
Period size: 51 Copynumber: 9.5 Consensus size: 51
668430 GAAATAACGA
* * *
668440 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTG-TTTTAGAAATAAAACCGG
* * * *
668492 AGTTGGAGTATCCCCGA-TGAAAGGAAAATTGGTGTTTT-GAAAATAAAATC-G
1 GGTTGGAGTATCCCCGATTG--TGAAAAATTGGTGTTTTAG-AAATAAAACCGG
* * *
668543 GGTTGGAGTATCCTCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGG
* * ***** * * *
668594 GGTTGGAGTATCCCCGATTATGAGAAATCAAAATTTTGGAAATGAAGCCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGG
* * *** * * ***** ** *
668645 GGTTGGAATATCCCCTCGGA-GGT-AACGGGGTTGGAGTATCCCCGATGAAATAATGA
1 GGTTGGAGTAT-CCC-C-GATTGTGAA--AAATTGGTGTTTTAGAAAT-AAA-ACCGG
* * * * *
668701 GGTTGGAGTATCCTCGATTGAGAAAAATTGGTGTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGG
* * *
668752 AGTTGGAGTATCCCTGATTAT-AGAAAATTGGTGTTTT-GAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTAG-AAATAAAACCGG
* * * * * *
668803 GGTTGGAGTATCCCTGATTGCGGAAAATTGGTGTTTCAAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGG
* * *
668854 AGTTGCAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGG
* * *
668905 GGTTAGAGTATCCCTGATTATGAA
1 GGTTGGAGTATCCCCGATTGTGAA
668929 TATTTGAGAA
Statistics
Matches: 330, Mismatches: 88, Indels: 39
0.72 0.19 0.09
Matches are distributed among these distances:
50 26 0.08
51 215 0.65
52 38 0.12
53 24 0.07
54 10 0.03
55 6 0.02
56 11 0.03
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTAGAAATAAAACCGG
Found at i:670273 original size:15 final size:17
Alignment explanation
Indices: 670238--670277 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
670228 GGAATTGTCG
670238 AATTAAATTTGAGATTT
1 AATTAAATTTGAGATTT
*
670255 AATTAAGTTTGA-A-TT
1 AATTAAATTTGAGATTT
670270 AATTAAAT
1 AATTAAAT
670278 AAAAGGTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 9 0.43
16 1 0.05
17 11 0.52
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (17 bp):
AATTAAATTTGAGATTT
Found at i:675025 original size:28 final size:28
Alignment explanation
Indices: 674951--675351 Score: 403
Period size: 28 Copynumber: 14.0 Consensus size: 28
674941 CACTAACTTG
* *
674951 TGTGGGCTTTGAAAAGAGTTGCCACCGACTT
1 TGTGGGCTTTG-AAAG-GGTGCCACTGAC-T
674982 GTGTGGGCTTTGAAAGGGTGCCA-TCGACT
1 -TGTGGGCTTTGAAAGGGTGCCACT-GACT
* *
675011 TGTGGGCTTTAAAAGGGTATGCCATTGACT
1 TGTGGGCTTTGAAAGGG--TGCCACTGACT
*
675041 TGTGGGATTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
675069 TGTGGGCTTTGAAGGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
**
675097 TACGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
675125 TGTGGGCTTTGAAAGAGTGCCACTAATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
675153 TGTGGGCTTTGTATGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
675181 TGCGTGGGCTTTGAAAGGGTGCCACTGACT
1 T--GTGGGCTTTGAAAGGGTGCCACTGACT
* * *
675211 TGTGGGCTTCGGAAGGGTGCCACTGATTT
1 TGTGGGCTTTGAAAGGGTGCCACTGA-CT
*
675240 GTGTGGGCTTTGAAAGGGTATGCCATTGACT
1 -TGTGGGCTTTGAAAGGG--TGCCACTGACT
*
675271 TGTGGGCTTTGAAA--TTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
675297 TGTGGGCTTTGAAAAGATGCCACGGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
675325 TATGGGCTTGGAAAAGATGCCACTGAC
1 TGTGGGCTTTGAAAGGGTGCCACTGAC
675352 CTATGAGATT
Statistics
Matches: 314, Mismatches: 43, Indels: 28
0.82 0.11 0.07
Matches are distributed among these distances:
26 24 0.08
28 177 0.56
29 2 0.01
30 86 0.27
31 6 0.02
32 19 0.06
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:675069 original size:58 final size:57
Alignment explanation
Indices: 674951--675351 Score: 402
Period size: 58 Copynumber: 7.0 Consensus size: 57
674941 CACTAACTTG
* *
674951 TGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCA-TCGACT
1 TGTGGGCTTTG-AAAGGGTTGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACT-GACT
* * *
675011 TGTGGGCTTTAAAAGGGTATGCCATTGACTTGTGGGATTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGT-TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * **
675069 TGTGGGCTTTG-AAGGGGTACCACTAACTTACGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * * *
675125 TGTGGGCTTTGAAAGAG-TGCCACTAATTTGTGGGCTTTGTATGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGGTTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
675181 TGCGTGGGCTTTGAAAGGG-TGCCACTGACTTGTGGGCTTCGGAAGGGTGCCACTGATTT
1 T--GTGGGCTTTGAAAGGGTTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA-CT
* *
675240 GTGTGGGCTTTGAAAGGGTATGCCATTGACTTGTGGGCTTTGAAA--TTGCCACTGACT
1 -TGTGGGCTTTGAAAGGGT-TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * * *
675297 TGTGGGCTTTGAAA-AGATGCCACGGACTTATGGGCTTGGAAAAGATGCCACTGAC
1 TGTGGGCTTTGAAAGGGTTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGAC
675352 CTATGAGATT
Statistics
Matches: 289, Mismatches: 41, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
54 21 0.07
55 1 0.00
56 100 0.35
57 10 0.03
58 106 0.37
59 10 0.03
60 41 0.14
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.30
Consensus pattern (57 bp):
TGTGGGCTTTGAAAGGGTTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:675105 original size:86 final size:84
Alignment explanation
Indices: 674951--675338 Score: 377
Period size: 86 Copynumber: 4.5 Consensus size: 84
674941 CACTAACTTG
* * * *
674951 TGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCA-TCGACTTGTG
1 TGTGGGCTTTG-AAAG-GGTGCCACTGAC-T-TGTGGGCTTTGAAAGGGTACCACT-GACTTGCG
* *
675015 GGCTTTAAAAGGGTATGCCATTGACT
61 GGCTTTGAAAGGG--TGCCACTGACT
* * * *
675041 TGTGGGATTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAGGGGTACCACTAACTTACGGGCTT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTACCACTGACTTGCGGGCTT
675106 TGAAAGGGTGCCACTGACT
66 TGAAAGGGTGCCACTGACT
* * * * * * * *
675125 TGTGGGCTTTGAAAGAGTGCCACTAATTTGTGGGCTTTGTATGGATGCCACTGATTTGCGTGGGC
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTACCACTGACTTGC--GGGC
675190 TTTGAAAGGGTGCCACTGACT
64 TTTGAAAGGGTGCCACTGACT
* * * * *
675211 TGTGGGCTTCGGAAGGGTGCCACTGATTTGTGTGGGCTTTGAAAGGGTATGCCATTGACTTGTGG
1 TGTGGGCTTTGAAAGGGTGCCACTGA-CT-TGTGGGCTTTGAAAGGGTA--CCACTGACTTGCGG
*
675276 GCTTTGAAA--TTGCCACTGACT
62 GCTTTGAAAGGGTGCCACTGACT
* * * * *
675297 TGTGGGCTTTGAAAAGATGCCACGGACTTATGGGCTTGGAAA
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAA
675339 AGATGCCACT
Statistics
Matches: 250, Mismatches: 41, Indels: 20
0.80 0.13 0.06
Matches are distributed among these distances:
84 70 0.28
85 1 0.00
86 116 0.46
87 4 0.02
88 36 0.14
89 4 0.02
90 19 0.08
ACGTcount: A:0.20, C:0.16, G:0.33, T:0.30
Consensus pattern (84 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTACCACTGACTTGCGGGCTT
TGAAAGGGTGCCACTGACT
Found at i:675188 original size:114 final size:113
Alignment explanation
Indices: 674986--675351 Score: 353
Period size: 114 Copynumber: 3.2 Consensus size: 113
674976 CGACTTGTGT
* * * *
674986 GGGCTTTGAAAGGGTGCCA-TCGACTTGTGGGCTTTAAAAGGGTATGCCATTGACTTGTGGGATT
1 GGGCTTTGAAAGGGTGCCACT-GACTTGTGGGCTTTGAAAGAG-ATGCCACTAACTTGTGGGATT
* *
675050 TGAAAGGGTGCCACTGACTTGTGGGCTTTGAAGGGGTACCACTAACTTAC
64 TGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTACCACTAACTTAC
* *
675100 GGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAG-TGCCACTAATTTGTGGGCTTTG
1 GGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGATGCCACTAACTTGTGGGATTTG
* * * * * **
675164 TATGGATGCCACTGATTTGCGTGGGCTTTGAAAGGGTGCCACTGACTTGT
66 AAAGGATGCCACTGACTT--GTGGGCTTTGAAAGGGTACCACTAACTTAC
* * * * * * *
675214 GGGCTTCGGAAGGGTGCCACTGATTTGTGTGGGCTTTGAAAGGGTATGCCATTGACTTGTGGGCT
1 GGGCTTTGAAAGGGTGCCACTGA-CT-TGTGGGCTTTGAAAGAG-ATGCCACTAACTTGTGGGAT
* * * * ** *
675279 TTGAAA--TTGCCACTGACTTGTGGGCTTTGAAAAGATGCCACGGACTTAT
63 TTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTACCACTAACTTAC
* * *
675328 GGGCTTGGAAAAGATGCCACTGAC
1 GGGCTTTGAAAGGGTGCCACTGAC
675352 CTATGAGATT
Statistics
Matches: 210, Mismatches: 35, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
112 32 0.15
114 129 0.61
115 2 0.01
116 27 0.13
118 20 0.10
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.30
Consensus pattern (113 bp):
GGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGATGCCACTAACTTGTGGGATTTG
AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTACCACTAACTTAC
Found at i:679454 original size:21 final size:21
Alignment explanation
Indices: 679413--679456 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
679403 TTCCCCTTTA
* *
679413 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
679434 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
679455 TC
1 TC
679457 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:683361 original size:15 final size:15
Alignment explanation
Indices: 683341--683371 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
683331 ATTTCGTTTG
*
683341 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
683356 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
683371 G
1 G
683372 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:685195 original size:21 final size:21
Alignment explanation
Indices: 685166--685210 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
685156 AAGTTTTTAT
*
685166 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
685186 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
685208 TTT
1 TTT
685211 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:692080 original size:20 final size:19
Alignment explanation
Indices: 692056--692130 Score: 80
Period size: 19 Copynumber: 3.8 Consensus size: 19
692046 ACACACTTAG
*
692056 ATGTATCGATACATGCTGCC
1 ATGTATCGATACATG-TGCA
* *
692076 TTGTATCGATACATGTTCA
1 ATGTATCGATACATGTGCA
692095 ATGTATCGATACATG-GACAA
1 ATGTATCGATACATGTG-C-A
692115 ATTGTATCGATACATG
1 A-TGTATCGATACATG
692131 AAATTGGCTG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 17 0.36
20 16 0.34
21 14 0.30
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (19 bp):
ATGTATCGATACATGTGCA
Found at i:692196 original size:13 final size:13
Alignment explanation
Indices: 692175--692205 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
692165 CGATACATGG
*
692175 TACAATGTATCGA
1 TACATTGTATCGA
692188 TACATTGTATCGA
1 TACATTGTATCGA
692201 TACAT
1 TACAT
692206 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:692201 original size:33 final size:32
Alignment explanation
Indices: 692159--692225 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 32
692149 CTATCACTAT
692159 TTGTATCGATACATG-GTACAATGTATCGATACA
1 TTGTATCGATACATGAG-A-AATGTATCGATACA
692192 TTGTATCGATACATGAAGAAATGTATCGATACA
1 TTGTATCGATACATG-AGAAATGTATCGATACA
692225 T
1 T
692226 AGCTTGTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (32 bp):
TTGTATCGATACATGAGAAATGTATCGATACA
Found at i:704993 original size:20 final size:20
Alignment explanation
Indices: 704967--705086 Score: 87
Period size: 20 Copynumber: 5.8 Consensus size: 20
704957 AAAAAGACAG
704967 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCATA
* * * *
704987 CATGTATCAATACATTAAAA
1 AATGTATCGATACATTCATA
**
705007 AATGTATCGATACACACATTGA
1 AATGTATCGATACATTCA-T-A
*
705029 AGGATGTATCAATACATTCATA
1 A--ATGTATCGATACATTCATA
** * * *
705051 CGTGTACCGATACATTGAAA
1 AATGTATCGATACATTCATA
*
705071 AATATATCGATACATT
1 AATGTATCGATACATT
705087 TGGGTAAAAA
Statistics
Matches: 73, Mismatches: 23, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
20 55 0.75
22 3 0.04
23 1 0.01
24 14 0.19
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:705110 original size:31 final size:31
Alignment explanation
Indices: 705069--705127 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
705059 GATACATTGA
*
705069 AAAATATATCGATACATTTGGGTAAAAAGAC
1 AAAATATATCGATACATCTGGGTAAAAAGAC
*
705100 AAAATGTATCGATACATCTGGGTAAAAA
1 AAAATATATCGATACATCTGGGTAAAAA
705128 TATGACTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.47, C:0.10, G:0.17, T:0.25
Consensus pattern (31 bp):
AAAATATATCGATACATCTGGGTAAAAAGAC
Found at i:709476 original size:174 final size:175
Alignment explanation
Indices: 709185--709519 Score: 573
Period size: 174 Copynumber: 1.9 Consensus size: 175
709175 CAAATTTTTA
* *
709185 TCTTATTTAAACTAAAAGATCACCAAATCTGAGTCCCTAAAAATTTGTAGAATTTTAACTCCCTT
1 TCTTATTTAAACTAAAAGATCACCAAATCTGAGTCCCTAAAAACTTGTAGAATTTTAACACCCTT
*
709250 AGTGTTTCATGAAGAAGCCTTAATACTCAATAATGTTATTGTTGCAATAAAAATTGAGTCTGGCT
66 AGTGTTTCATGAAGAAGCCTTAATACTCAATAATGTTATTGTGGCAATAAAAATTGAGTCTGGCT
709315 ATAAAAGGTAATGGTTTTCTTCAGGTGAAATCCTAGTTTTCCCAT
131 ATAAAAGGTAATGGTTTTCTTCAGGTGAAATCCTAGTTTTCCCAT
* * * *
709360 TCTTATTTAAGCTGAAAGATCACCAAGTCTTAGTCCCT-AAAACTTGTAGAATTTTAACACCCTT
1 TCTTATTTAAACTAAAAGATCACCAAATCTGAGTCCCTAAAAACTTGTAGAATTTTAACACCCTT
* * *
709424 AGTTTTTCATGAAGTAGCCTTAATACTCAATAATGTTATTGTGGCAATAAAAATTGAGTCTGGTT
66 AGTGTTTCATGAAGAAGCCTTAATACTCAATAATGTTATTGTGGCAATAAAAATTGAGTCTGGCT
709489 ATAAAAGGTAATGGTTTTCTTCAGGTGAAAT
131 ATAAAAGGTAATGGTTTTCTTCAGGTGAAAT
709520 TAATATTGCT
Statistics
Matches: 150, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
174 116 0.77
175 34 0.23
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.36
Consensus pattern (175 bp):
TCTTATTTAAACTAAAAGATCACCAAATCTGAGTCCCTAAAAACTTGTAGAATTTTAACACCCTT
AGTGTTTCATGAAGAAGCCTTAATACTCAATAATGTTATTGTGGCAATAAAAATTGAGTCTGGCT
ATAAAAGGTAATGGTTTTCTTCAGGTGAAATCCTAGTTTTCCCAT
Found at i:712635 original size:51 final size:50
Alignment explanation
Indices: 712566--712678 Score: 140
Period size: 51 Copynumber: 2.2 Consensus size: 50
712556 AAATAACGGG
*
712566 GTTGGAGTATCCTTGATTAT-GAGAAATTGGTGTTTT-GAAAATAAAACCGGA
1 GTTGGAGTAT-CTTGATTATGGA-AAATTGGTATTTTAG-AAATAAAACCGGA
* * *
712617 GTTGGAATATCTTCGATTATGGAAAATTGGTATTTTAGAAATAAAATCGGG
1 GTTGGAGTATCTT-GATTATGGAAAATTGGTATTTTAGAAATAAAACCGGA
712668 GTTGGAGTATC
1 GTTGGAGTATC
712679 CCCTCAAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
50 3 0.06
51 48 0.89
52 3 0.06
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.35
Consensus pattern (50 bp):
GTTGGAGTATCTTGATTATGGAAAATTGGTATTTTAGAAATAAAACCGGA
Found at i:712713 original size:130 final size:127
Alignment explanation
Indices: 712371--712993 Score: 761
Period size: 122 Copynumber: 4.9 Consensus size: 127
712361 GAGGCTAGAG
*
712371 TATCCCCGATTATGGAAAATCGGTGTTCTACAAATAAAAATCGGGGTTGGAGTATCCCCTCAAAA
1 TATCCCCGATTATGGAAAATTGGT-TT-TA-AAAT-AAAATCGGGGTTGGAGTATCCCCTCAAAA
* *
712436 ATAACAGGGTTGGAGTATCCCTGATTGT-AGAAAATTGGTATTTTGAAAATAAAATCGGAGTTGG
62 ATAACAGGGTTGGAGTATCCCTGATTGTGAG-AAATTGGTGTTTTGAAAATAAAACCGGAGTTGG
*
712500 AG
126 AA
* * * *
712502 TATCCCCGATTGTGGAAAATTGG---T--AATAAAGTCGTGGTTGGAGTATCCCCTCAGAAATAA
1 TATCCCCGATTATGGAAAATTGGTTTTAAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAA
* * *
712562 CGGGGTTGGAGTATCCTTGATTATGAGAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAA
66 CAGGGTTGGAGTATCCCTGATTGTGAGAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAA
**
712624 TATCTTCGATTATGGAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAA
1 TATCCCCGATTATGGAAAATTGG--TTTTA-AAATAAAATCGGGGTTGGAGTATCCCCTCAAAAA
* *
712689 TAACAGGGTTGGAGTATCCCTGATTGT-AGAAAATTGGTATTTTGAAAATAAAATCGGAGTTGGA
63 TAACAGGGTTGGAGTATCCCTGATTGTGAG-AAATTGGTGTTTTGAAAATAAAACCGGAGTTGGA
*
712753 G
127 A
* * ** *
712754 TATCCCCGATTGTGGAAAATTGG---T--AATAAAGTCATGGTTGGAGTATCCCCTCAGAAATAA
1 TATCCCCGATTATGGAAAATTGGTTTTAAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAA
* *
712814 CGGGGTTGGAGTAT-CCTCGATTATGAGAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAA
66 CAGGGTTGGAGTATCCCT-GATTGTGAGAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAA
*
712876 TATCTCCGATTATGGAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAA
1 TATCCCCGATTATGGAAAATTGG--TTTTA-AAATAAAATCGGGGTTGGAGTATCCCCTCAAAAA
* * * **
712941 TAACAGGATTGGAGTATCTCC-GATTGTGAAAAACTGGTGTTTTGGGAATAAAA
63 TAACAGGGTTGGAGTATC-CCTGATTGTGAGAAATTGGTGTTTTGAAAATAAAA
712994 TTGGGGTTAG
Statistics
Matches: 422, Mismatches: 48, Indels: 45
0.82 0.09 0.09
Matches are distributed among these distances:
121 3 0.01
122 206 0.49
123 7 0.02
125 1 0.00
126 1 0.00
127 2 0.00
129 2 0.00
130 177 0.42
131 21 0.05
132 2 0.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (127 bp):
TATCCCCGATTATGGAAAATTGGTTTTAAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAA
CAGGGTTGGAGTATCCCTGATTGTGAGAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAA
Found at i:712852 original size:252 final size:252
Alignment explanation
Indices: 712371--713012 Score: 1099
Period size: 252 Copynumber: 2.5 Consensus size: 252
712361 GAGGCTAGAG
* * * * *
712371 TATCCCCGATTATGGAAAATCGGTGTTCTACAAATAAAAATCGGGGTTGGAGTATCCCCTCAAAA
1 TATCTCCGATTATGGAAAATTGGTATTTTAGAAAT-AAAATCGGGGTTGGAGTATCCCCTCAAAA
712436 ATAACAGGGTTGGAGTATCCCTGATTGTAGAAAATTGGTATTTTGAAAATAAAATCGGAGTTGGA
65 ATAACAGGGTTGGAGTATCCCTGATTGTAGAAAATTGGTATTTTGAAAATAAAATCGGAGTTGGA
*
712501 GTATCCCCGATTGTGGAAAATTGGTAATAAAGTCGTGGTTGGAGTATCCCCTCAGAAATAACGGG
130 GTATCCCCGATTGTGGAAAATTGGTAATAAAGTCATGGTTGGAGTATCCCCTCAGAAATAACGGG
*
712566 GTTGGAGTATCCTTGATTATGAGAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAA
195 GTTGGAGTATCCTCGATTATGAGAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAA
*
712624 TATCTTCGATTATGGAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAA
1 TATCTCCGATTATGGAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAA
712689 TAACAGGGTTGGAGTATCCCTGATTGTAGAAAATTGGTATTTTGAAAATAAAATCGGAGTTGGAG
66 TAACAGGGTTGGAGTATCCCTGATTGTAGAAAATTGGTATTTTGAAAATAAAATCGGAGTTGGAG
712754 TATCCCCGATTGTGGAAAATTGGTAATAAAGTCATGGTTGGAGTATCCCCTCAGAAATAACGGGG
131 TATCCCCGATTGTGGAAAATTGGTAATAAAGTCATGGTTGGAGTATCCCCTCAGAAATAACGGGG
712819 TTGGAGTATCCTCGATTATGAGAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAA
196 TTGGAGTATCCTCGATTATGAGAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAA
712876 TATCTCCGATTATGGAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAA
1 TATCTCCGATTATGGAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAA
* * * ** * * *
712941 TAACAGGATTGGAGTATCTCC-GATTGT-GAAAAACTGGTGTTTTGGGAATAAAATTGGGGTTAG
66 TAACAGGGTTGGAGTATC-CCTGATTGTAG-AAAATTGGTATTTTGAAAATAAAATCGGAGTTGG
713004 AGTATCCCC
129 AGTATCCCC
713013 TCGAAAATAA
Statistics
Matches: 370, Mismatches: 17, Indels: 5
0.94 0.04 0.01
Matches are distributed among these distances:
251 1 0.00
252 338 0.91
253 31 0.08
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (252 bp):
TATCTCCGATTATGGAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAA
TAACAGGGTTGGAGTATCCCTGATTGTAGAAAATTGGTATTTTGAAAATAAAATCGGAGTTGGAG
TATCCCCGATTGTGGAAAATTGGTAATAAAGTCATGGTTGGAGTATCCCCTCAGAAATAACGGGG
TTGGAGTATCCTCGATTATGAGAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAA
Found at i:712886 original size:51 final size:51
Alignment explanation
Indices: 712818--712931 Score: 144
Period size: 51 Copynumber: 2.2 Consensus size: 51
712808 AAATAACGGG
*
712818 GTTGGAGTATCCTCGATTAT-GAGAAATTGGTGTTTT-GAAAATAAAACCGGA
1 GTTGGAGTATCCTCGATTATGGA-AAATTGGTATTTTAG-AAATAAAACCGGA
* * *
712869 GTTGGAATAT-CTCCGATTATGGAAAATTGGTATTTTAGAAATAAAATCGGG
1 GTTGGAGTATCCT-CGATTATGGAAAATTGGTATTTTAGAAATAAAACCGGA
712920 GTTGGAGTATCC
1 GTTGGAGTATCC
712932 CCTCAAAAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
50 2 0.04
51 48 0.89
52 4 0.07
ACGTcount: A:0.32, C:0.10, G:0.25, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCTCGATTATGGAAAATTGGTATTTTAGAAATAAAACCGGA
Found at i:712991 original size:79 final size:79
Alignment explanation
Indices: 712870--713037 Score: 237
Period size: 79 Copynumber: 2.1 Consensus size: 79
712860 AAAACCGGAG
* * * *
712870 TTGGAATATCTCCGATTATGGAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCCT
1 TTGGAGTATCTCCGATTATGAAAAACTGGTATTTTAGAAATAAAATCGGGGTTAGAGTATCCCCT
712935 CAAAAATAACAGGA
66 CAAAAATAACAGGA
* * * * *
712949 TTGGAGTATCTCCGATTGTGAAAAACTGGTGTTTTGGGAATAAAATTGGGGTTAGAGTATCCCCT
1 TTGGAGTATCTCCGATTATGAAAAACTGGTATTTTAGAAATAAAATCGGGGTTAGAGTATCCCCT
* *
713014 CGAAAATAACGGGA
66 CAAAAATAACAGGA
713028 TTGGAGTATC
1 TTGGAGTATC
713038 CCTGATGACA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (79 bp):
TTGGAGTATCTCCGATTATGAAAAACTGGTATTTTAGAAATAAAATCGGGGTTAGAGTATCCCCT
CAAAAATAACAGGA
Found at i:713108 original size:107 final size:106
Alignment explanation
Indices: 712997--713188 Score: 262
Period size: 107 Copynumber: 1.8 Consensus size: 106
712987 AATAAAATTG
* * * *
712997 GGGTTAGAGTATCCCCTCGAAAATAACGGGATTGGAGTAT-CCCT-GATGACATAACGGGGTTGG
1 GGGTTAGAGTATCCCCTCAAAAATAACGGGATTGGAGTATCCCCTCGA--AAATAACGAGGTTGA
*
713060 AGTACCCCCGATTATGAAAAATCAATATTTTAGATACAAAGCCA
64 AGTACCCCCGA-GATGAAAAATCAATATTTTAGATACAAAGCCA
* * *
713104 GGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCCCTCGAAAATAACGAGGTTGAAG
1 GGGTTAGAGTATCCCCTCAAAAATAACGGGATTGGAGTATCCCCTCGAAAATAACGAGGTTGAAG
*
713169 TATCCCCGAGATGAAAAATC
66 TACCCCCGAGATGAAAAATC
713189 TAGAAATTTA
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
106 10 0.14
107 58 0.78
108 4 0.05
109 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.23
Consensus pattern (106 bp):
GGGTTAGAGTATCCCCTCAAAAATAACGGGATTGGAGTATCCCCTCGAAAATAACGAGGTTGAAG
TACCCCCGAGATGAAAAATCAATATTTTAGATACAAAGCCA
Found at i:713136 original size:28 final size:28
Alignment explanation
Indices: 713104--713175 Score: 108
Period size: 28 Copynumber: 2.6 Consensus size: 28
713094 TACAAAGCCA
*
713104 GGGTTGGAGTATCCCCTCAAAAATAATG
1 GGGTTGGAGTATCCCCTCAAAAATAACG
*
713132 GGGTTGGAGTATCCCCTCGAAAATAACG
1 GGGTTGGAGTATCCCCTCAAAAATAACG
* *
713160 AGGTTGAAGTATCCCC
1 GGGTTGGAGTATCCCC
713176 GAGATGAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCTCAAAAATAACG
Found at i:714872 original size:13 final size:13
Alignment explanation
Indices: 714854--714884 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
714844 ATACAATGAG
*
714854 CAATGTATCGATA
1 CAATGTATCAATA
714867 CAATGTATCAATA
1 CAATGTATCAATA
714880 CAATG
1 CAATG
714885 AGAAATGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (13 bp):
CAATGTATCAATA
Found at i:714881 original size:33 final size:33
Alignment explanation
Indices: 714839--714904 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
714829 TTGTAAAATT
*
714839 TATCAATACAATGAGCAATGTATCGATACAATG
1 TATCAATACAATGAGAAATGTATCGATACAATG
714872 TATCAATACAATGAGAAATGTATCGATACAATG
1 TATCAATACAATGAGAAATGTATCGATACAATG
714905 CAAAATGTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.44, C:0.14, G:0.15, T:0.27
Consensus pattern (33 bp):
TATCAATACAATGAGAAATGTATCGATACAATG
Found at i:714881 original size:53 final size:53
Alignment explanation
Indices: 714815--714921 Score: 137
Period size: 53 Copynumber: 2.0 Consensus size: 53
714805 AAAATGCCTG
* * * *
714815 AATGTATCGATACATTGTA-AAATTTATCAATACAATG-AGCAATGTATCGATAC
1 AATGTATCAATACAATG-AGAAATGTATCAATACAATGCA-AAATGTATCGATAC
*
714868 AATGTATCAATACAATGAGAAATGTATCGATACAATGCAAAATGTATCGATAC
1 AATGTATCAATACAATGAGAAATGTATCAATACAATGCAAAATGTATCGATAC
714921 A
1 A
714922 TCTGGGTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
52 1 0.02
53 45 0.96
54 1 0.02
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.29
Consensus pattern (53 bp):
AATGTATCAATACAATGAGAAATGTATCAATACAATGCAAAATGTATCGATAC
Found at i:714893 original size:20 final size:20
Alignment explanation
Indices: 714868--714921 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
714858 GTATCGATAC
*
714868 AATGTATCAATACAATG-AGA
1 AATGTATCGATACAATGCA-A
714888 AATGTATCGATACAATGCAA
1 AATGTATCGATACAATGCAA
714908 AATGTATCGATACA
1 AATGTATCGATACA
714922 TCTGGGTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (20 bp):
AATGTATCGATACAATGCAA
Found at i:714969 original size:71 final size:71
Alignment explanation
Indices: 714869--715063 Score: 295
Period size: 71 Copynumber: 2.8 Consensus size: 71
714859 TATCGATACA
* * **
714869 ATGTATCAATACAATGAGAAATGTATCGATACAATGCAAAATGTATCGATACATCTGGGTAAACT
1 ATGTATCGATACAAAGATCAATGTATCGATACAATGCAAAATGTATCGATACATCTGGGTAAACT
714934 TCCTAG
66 TCCTAG
* *
714940 ATGTATCGATACAAATATCAATGTATCGATACAATGCAAAATGTATCGATACATCTGGGTAATCT
1 ATGTATCGATACAAAGATCAATGTATCGATACAATGCAAAATGTATCGATACATCTGGGTAAACT
715005 TCCTAG
66 TCCTAG
* *
715011 ATGTATCGATACAAAGATCGATGTATCGATACATTG-AATAATGTA-CGATACAT
1 ATGTATCGATACAAAGATCAATGTATCGATACAATGCAA-AATGTATCGATACAT
715064 TTCCTTGGCA
Statistics
Matches: 114, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
70 10 0.09
71 104 0.91
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (71 bp):
ATGTATCGATACAAAGATCAATGTATCGATACAATGCAAAATGTATCGATACATCTGGGTAAACT
TCCTAG
Found at i:718302 original size:52 final size:51
Alignment explanation
Indices: 718240--718629 Score: 238
Period size: 51 Copynumber: 7.4 Consensus size: 51
718230 GAGATAACGA
* * * *
718240 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTAGT-GTTTTGGAAATAAAATCGG
* * * *
718292 AGTTGGAGTATCCCCGATTAAAG-GAAAAATTGGTGTTTTGAAAACAAAA-CTGG
1 GGTTGGAGTATCCCCGATT---GTGAAAAATTAGTGTTTTGGAAATAAAATC-GG
* * * *
718345 GGTTGTAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGT-GAAAAATTAGTGTTTTGGAAATAAAATCGG
* * * * *
718397 GGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCGG
** * **** * *
718448 GGTTGGAGTATCCCC---TCAGAAATAACGGGGTTGGAGTATCCCCGATGAT-TAA-CGG
1 GGTTGGAGTATCCCCGATTGTGAAA-AA-----TT--AGTGTTTTGGA-AATAAAATCGG
* * *
718503 GGTTGGAGTATCCCCGACTGTGAAAATTTGGTGTTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTAGTG---TTTTGGAAATAAAATCGG
* * * *
718557 AGTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGA-AAAATTAGTGTTTTGGAAATAAAATCGG
* *
718608 AGTTGGAATATCCCCGATTGTG
1 GGTTGGAGTATCCCCGATTGTG
718630 GAGAATTGAG
Statistics
Matches: 259, Mismatches: 53, Indels: 52
0.71 0.15 0.14
Matches are distributed among these distances:
48 5 0.02
49 2 0.01
50 3 0.01
51 73 0.28
52 64 0.25
53 37 0.14
54 41 0.16
55 19 0.07
56 7 0.03
57 3 0.01
58 5 0.02
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCGG
Found at i:718356 original size:53 final size:53
Alignment explanation
Indices: 718293--718462 Score: 168
Period size: 52 Copynumber: 3.3 Consensus size: 53
718283 TAAAATCAGA
* *
718293 GTTGGAGTATCCCCGATTAAAGGAAAAATTGGTGTTTT-GAAAACAAAACTGGG
1 GTTGGAGTATCCCCGATTAAAGGAAAAATTAGTGTTTTAG-AAACAAAACCGGG
* ** * *
718346 GTTGTAGTATCCCCGATT-GTGGAAAAATTAGTGTTTTAGCAATAAAACCGGG
1 GTTGGAGTATCCCCGATTAAAGGAAAAATTAGTGTTTTAGAAACAAAACCGGG
* * * * * * **
718398 GTTGGAGTATCCCCGATT--ATGAAAAATCAATATTTTGGAAATAAAGTCGGG
1 GTTGGAGTATCCCCGATTAAAGGAAAAATTAGTGTTTTAGAAACAAAACCGGG
718449 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
718463 TCAGAAATAA
Statistics
Matches: 99, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
51 38 0.38
52 43 0.43
53 18 0.18
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (53 bp):
GTTGGAGTATCCCCGATTAAAGGAAAAATTAGTGTTTTAGAAACAAAACCGGG
Found at i:718451 original size:264 final size:263
Alignment explanation
Indices: 718130--718631 Score: 758
Period size: 264 Copynumber: 1.9 Consensus size: 263
718120 TCAAAAATAA
* *
718130 CGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCCGGGGTTGGAGTAG
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAG
* * * *
718195 CCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAGATAACGAGGTTGGAGTATCCTCGATTG
66 CCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGA-ATAACGAGGTTGGAGTATCCCCGACTG
718260 TGAAAAATT-G-GTATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAAGGAAAAATT
130 TGAAAAATTGGTGTATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAA-G-AAAATT
* * * * *
718323 GGTGTTTTGAAAACAAAA-CTGGGGTTGTAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCA
193 AGTGTCTTGAAAACAAAATC-GGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCA
718387 ATAAAAC
257 ATAAAAC
* * *
718394 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAG
* *
718459 CCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGATTAACGGGGTTGGAGTATCCCCGACTGT
66 CCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCCCGACTGT
* * * *
718524 GAAAATTTGGTGTTTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTATAGAAAATTAGT
131 GAAAAATTGGTGTATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAAGAAAATTAGT
*
718589 GTCTTGAAAATAAAATCGGAGTTGGAATATCCCCGATTGTGGA
196 GTCTTGAAAACAAAATCGGAGTTGGAATATCCCCGATTGTGGA
718632 GAATTGAGAA
Statistics
Matches: 214, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
263 75 0.35
264 98 0.46
265 41 0.19
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (263 bp):
CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAG
CCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCCCGACTGT
GAAAAATTGGTGTATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAAGAAAATTAGT
GTCTTGAAAACAAAATCGGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAA
AAC
Found at i:718508 original size:27 final size:27
Alignment explanation
Indices: 718445--718519 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 27
718435 GAAATAAAGT
*
718445 CGGGGTTGGAGTATCCCCTCAGAAATAA
1 CGGGGTTGGAGTATCCCC-GAGAAATAA
*
718473 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGA-GAAATAA
718500 CGGGGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
718520 CTGTGAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGAGAAATAA
Found at i:720914 original size:13 final size:13
Alignment explanation
Indices: 720896--720921 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
720886 ATAAAGATCC
720896 ATGTATCGATACA
1 ATGTATCGATACA
720909 ATGTATCGATACA
1 ATGTATCGATACA
720922 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:721954 original size:61 final size:60
Alignment explanation
Indices: 721584--722303 Score: 872
Period size: 61 Copynumber: 12.4 Consensus size: 60
721574 ATAAAGCGTA
* *** * *
721584 TCCTGCTCTTTAAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT----GA-AAGGTG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* * *
721639 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----GA-AAGGAG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* ** *
721694 TCCTGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT---A-AG-AGGTG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* * * *
721749 TCCTACTCTTTGAGGATTAGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG-GTA----
1 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* * * * *
721805 TCCTACTCTTTGGGGAAT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* * *
721865 TCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCG
721926 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AGAAGGCG
721987 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCG
* *
722048 TCCTGCTCTTTGAGGACTGGGAAGCGCCACCAACTTGTGTGGGCTTT---A-TG-AGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
*
722103 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCG
*
722164 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGCGGGCTTT---A-A-AAGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* *
722219 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAGGCA
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAGGCG
*
722280 TCCTGCTCTTTGAGGACTAGGAAG
1 TCCTGCTCTTTGAGGACTGGGAAG
722304 GGCTAAAAGA
Statistics
Matches: 596, Mismatches: 40, Indels: 52
0.87 0.06 0.08
Matches are distributed among these distances:
55 249 0.42
56 43 0.07
58 3 0.01
59 3 0.01
60 45 0.08
61 252 0.42
62 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (60 bp):
TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
Found at i:722182 original size:116 final size:117
Alignment explanation
Indices: 721584--722303 Score: 929
Period size: 116 Copynumber: 6.2 Consensus size: 117
721574 ATAAAGCGTA
* *** * * *
721584 TCCTGCTCTTTAAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
* *
721648 TTGAGGACT-GGAAAATGCCACCAACTTGTGTGGGCTTT-----GA-AAGGAG
66 TTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
* ** * *
721694 TCCTGCTCTTTGGGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTACTCT
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
* *
721758 TTGAGGATTAGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-G-GTA----
66 TTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
* * * * *
721805 TCCTACTCTTTGGGGAAT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCC
1 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT-AAAG---AGGCGTCCT
*
721869 GCTCTTTGAGGACT-GGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
61 GCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
721926 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT---A-AAG-AGGCGTCCT
*
721991 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
61 GCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
* *
722048 TCCTGCTCTTTGAGGACTGGGAAGCGCCACCAACTTGTGTGGGCTTT-ATGAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
722112 TTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
66 TTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
*
722164 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGCGGGCTTTAAA-AGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
* *
722228 TTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAGGCA
66 TTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
*
722280 TCCTGCTCTTTGAGGACTAGGAAG
1 TCCTGCTCTTTGAGGACTGGGAAG
722304 GGCTAAAAGA
Statistics
Matches: 551, Mismatches: 32, Indels: 48
0.87 0.05 0.08
Matches are distributed among these distances:
109 2 0.00
110 69 0.13
111 65 0.12
113 3 0.01
115 31 0.06
116 219 0.40
117 5 0.01
121 39 0.07
122 111 0.20
123 4 0.01
124 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (117 bp):
TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
TTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
Found at i:728554 original size:79 final size:79
Alignment explanation
Indices: 728387--728590 Score: 205
Period size: 79 Copynumber: 2.6 Consensus size: 79
728377 GAGATAATAA
* * * * *
728387 CGGGGTTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATG
1 CGGGGTTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAGTTATGAGAAATCAATG
*
728451 ATCAGAAAAAAAAAT
65 ATCAGAAAAAAAAAC
* *
728466 CGGGATTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCATTTATGAGAAATCAAT-A
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAGTTATGAGAAATCAATGA
** ** * **
728530 TTTTGGGAATAACGC
66 -TCAGAAAAAAAAAC
* * * *
728545 CGGGGTTGGAGTAGCCCCTCGGAAGTAACGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCC
728591 GATGAGATAA
Statistics
Matches: 103, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
78 7 0.07
79 96 0.93
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAGTTATGAGAAATCAATGA
TCAGAAAAAAAAAC
Found at i:728666 original size:52 final size:51
Alignment explanation
Indices: 728604--728990 Score: 261
Period size: 51 Copynumber: 7.4 Consensus size: 51
728594 GAGATAACGA
* * * *
728604 GGTTGGAGTATCCTCGATTATGAAAAATTGGTATTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGT-GTTTTGGAAATAAAATCGG
* * * * *
728656 AGTTGGAGTATCCCCGATTAAAGGAAAAATTGGTGTTTTGAAAACAAAA-CTGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTAGTGTTTTGGAAATAAAATC-GG
* * * * *
728709 GGTTGTAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTAT-GAAAAATTAGTGTTTTGGAAATAAAATCGG
* * * *
728761 GGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGGAAATAAAATCGG
* * *
728812 GGTTGGAGTATCCCC--TTA-GAAATAA-CAG-G-GTTGGAGTATCCCCGATGATTAA-CGG
1 GGTTGGAGTATCCCCGATTATGAAA-AATTAGTGTTTTGGA--A------AT-A-AAATCGG
* * * *
728867 GGTTGGAGTATCCCCGACTGTGAAAATTTGGTGCTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTG---TTTTGGAAATAAAATCGG
* * *
728921 AGTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGA-AAAATTAGTGTTTTGGAAATAAAATCGG
* *
728972 AGTTGGAATATCCCCGATT
1 GGTTGGAGTATCCCCGATT
728991 GTGGAGAATT
Statistics
Matches: 263, Mismatches: 45, Indels: 55
0.72 0.12 0.15
Matches are distributed among these distances:
46 5 0.02
48 7 0.03
49 5 0.02
51 72 0.27
52 60 0.23
53 34 0.13
54 44 0.17
55 21 0.08
56 1 0.00
57 2 0.01
58 5 0.02
59 1 0.00
61 1 0.00
63 5 0.02
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGGAAATAAAATCGG
Found at i:728720 original size:53 final size:53
Alignment explanation
Indices: 728604--728826 Score: 170
Period size: 52 Copynumber: 4.3 Consensus size: 53
728594 GAGATAACGA
* * * * * * * *
728604 GGTTGGAGTATCCTCGATT--ATGAAAAATTGGTATTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTAAAGGAAAAATTAGT-GTTTTAGAAACAAAACCGG
* * *
728656 AGTTGGAGTATCCCCGATTAAAGGAAAAATTGGTGTTTT-GAAAACAAAACTGG
1 GGTTGGAGTATCCCCGATTAAAGGAAAAATTAGTGTTTTAG-AAACAAAACCGG
* ** * *
728709 GGTTGTAGTATCCCCGATT-GTGGAAAAATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTAAAGGAAAAATTAGTGTTTTAGAAACAAAACCGG
* * * * * * **
728761 GGTTGGAGTATCCCCGATT--ATGAAAAATCAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTAAAGGAAAAATTAGTGTTTTAGAAACAAAACCGG
728812 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
728827 TTAGAAATAA
Statistics
Matches: 141, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
51 38 0.27
52 61 0.43
53 30 0.21
54 12 0.09
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (53 bp):
GGTTGGAGTATCCCCGATTAAAGGAAAAATTAGTGTTTTAGAAACAAAACCGG
Found at i:728845 original size:264 final size:262
Alignment explanation
Indices: 728494--728995 Score: 713
Period size: 264 Copynumber: 1.9 Consensus size: 262
728484 TCGAAAATAA
* * *
728494 CGGGGTTGGAGTATCCCCATTTATGAGAAATCAATATTTTGGGAATAACGCCGGGGTTGGAGTAG
1 CGGGGTTGGAGTATCCCCATTTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAG
* * * * *
728559 CCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAGATAACGAGGTTGGAGTATCCTCGATTA
66 CCCCTCAGAAATAACAGGGTTGGAGTATCCCCGATGA-ATAACGAGGTTGGAGTATCCCCGACTA
*
728624 TGAAAAATTGGT-ATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAAGGAAAAATTG
130 TGAAAAATTGGTCATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAA-G-AAAATTA
* * * *
728688 GTGTTTTGAAAACAAAA-CTGGGGTTGTAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAA
193 GTGTCTTGAAAACAAAATC-GGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAA
728752 TAAAAC
257 TAAAAC
*
728758 CGGGGTTGGAGTATCCCCGA-TTATGAAAAATCAATATTTTGGAAATAAAGTCGGGGTTGGAGTA
1 CGGGGTTGGAGTATCCCC-ATTTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTA
* * * * *
728822 TCCCCTTAGAAATAACAGGGTTGGAGTATCCCCGATGATTAACGGGGTTGGAGTATCCCCGACTG
65 GCCCCTCAGAAATAACAGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCCCGACTA
* * * *
728887 TGAAAATTTGGTGCTTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTATAGAAAATTAG
130 TGAAAAATTGGT-CATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAAGAAAATTAG
*
728952 TGTCTTGAAAATAAAATCGGAGTTGGAATATCCCCGATTGTGGA
194 TGTCTTGAAAACAAAATCGGAGTTGGAATATCCCCGATTGTGGA
728996 GAATTGAGAA
Statistics
Matches: 210, Mismatches: 24, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
263 77 0.37
264 93 0.44
265 40 0.19
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (262 bp):
CGGGGTTGGAGTATCCCCATTTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAG
CCCCTCAGAAATAACAGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCCCGACTAT
GAAAAATTGGTCATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTAAAGAAAATTAGTG
TCTTGAAAACAAAATCGGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAA
AC
Found at i:728872 original size:27 final size:29
Alignment explanation
Indices: 728809--728883 Score: 102
Period size: 27 Copynumber: 2.7 Consensus size: 29
728799 GAAATAAAGT
*
728809 CGGGGTTGGAGTATCCCC-TTAGAAATAA
1 CGGGGTTGGAGTATCCCCGATAGAAATAA
* *
728837 CAGGGTTGGAGTATCCCCGAT-G-ATTAA
1 CGGGGTTGGAGTATCCCCGATAGAAATAA
728864 CGGGGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
728884 CTGTGAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 23 0.55
28 18 0.43
29 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCCCGATAGAAATAA
Found at i:731367 original size:13 final size:13
Alignment explanation
Indices: 731349--731374 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
731339 ACAAAGATCC
731349 ATGTATCGATACA
1 ATGTATCGATACA
731362 ATGTATCGATACA
1 ATGTATCGATACA
731375 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:731386 original size:33 final size:33
Alignment explanation
Indices: 731328--731394 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
731318 AAAATTTCCA
***
731328 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
* *
731361 AATGTATCGATACACAGAAAAATGTATTGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
731394 A
1 A
731395 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:732407 original size:61 final size:60
Alignment explanation
Indices: 732058--732938 Score: 1160
Period size: 61 Copynumber: 15.1 Consensus size: 60
732048 AAGGACTAAA
* * *
732058 AAGTGCCACCAACTCGTGTGGGCTTT----GA-AAGGTGTCCTGCTCTTTGAGGACTGGA
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
* * * *
732113 AAATGCCACCAACTTGTGTGGGCTTT----GA-AAGGAGTCCTGCTCTTTGGGGACT-GA
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
* * *
732167 AAGGTGCCACCAACTTGTGTGGGCTTT---A-AG-AGGTGTCCTGCTCTTTGAGGATTAGG
1 AA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
* * * *
732223 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAG-GTA----TCCTGCTCTTTGGGGAAT-GA
1 AA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
* * * *
732278 AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTGGA
1 AA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
*
732339 AAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTCCTGCTCTTTGAGGACTGGG
*
732400 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGCGTCCTACTCTTTGAGGACTGGG
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AGAAGGCGTCCTGCTCTTTGAGGACTGGG
* * *
732461 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGA
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
*
732521 AAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTCCTGCTCTTTGAGGACTGGG
*
732582 GAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGCGTCCTGCTCTTTGAGGACTGGG
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AGAAGGCGTCCTGCTCTTTGAGGACTGGG
732643 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTCCTGCTCTTTGAGGACTGGG
*
732704 AAGTGCCACCAACTTGTGTGGGCTTT---A-AG-AGGCGTCCTGCTCTTTGAGGACTAGG
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
* *
732759 AAGCGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTGTCCTGCTCTTTGAGGACTGGG
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTCCTGCTCTTTGAGGACTGGG
* *
732820 AAGTGCCACCAACTTGTGCGGGCTTT---A-A-AAGGCGTCCTGCTCTTTGAGGACTAGG
1 AAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
* *
732875 AAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAGGCATCCTGCTCTTTGAGGACTAGG
1 AAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
732936 AAG
1 AAG
732939 GGCTAAAAGA
Statistics
Matches: 749, Mismatches: 45, Indels: 58
0.88 0.05 0.07
Matches are distributed among these distances:
54 4 0.01
55 225 0.30
56 48 0.06
58 3 0.00
59 3 0.00
60 102 0.14
61 363 0.48
62 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (60 bp):
AAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGG
Found at i:732506 original size:182 final size:180
Alignment explanation
Indices: 732037--732938 Score: 1195
Period size: 182 Copynumber: 5.1 Consensus size: 180
732027 ATAAAGCGTA
* * ** * *
732037 TCCTACTCTTTAAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT----GA-AAGGTGTCCTG
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTG
* * *
732097 CTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT----G-AAAGGAGTCCTGCTCTT
66 CTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTT
* *
732157 TGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT---A-AG-AGGTG
131 TGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* *
732202 TCCTGCTCTTTGAGGATTAGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG-GTA----TCCT
1 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCT
* * * * *
732262 GCTCTTTGGGGAAT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCCCGCTC
65 GCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTC
*
732326 TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
129 TTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCG
*
732379 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AGAAGGCGTCCT
* *
732444 ACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCT
65 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCT
*
732509 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
130 TTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCG
* *
732561 TCCTGCTCTTTGAGGACTGGGGAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AGAAGGCGTCCT
*
732626 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTC
65 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTC
*
732691 TTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT---A-AG-AGGCG
129 TTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
* *
732738 TCCTGCTCTTTGAGGACTAGGAAGCGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTCCT
*
732803 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGCGGGCTTT-----AAAAGGCGTCCTGCTCT
65 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCT
*
732863 TTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAGGCA
130 TTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAGGCG
732915 TCCTGCTCTTTGAGGACTAGGAAG
1 TCCTGCTCTTTGAGGACTAGGAAG
732939 GGCTAAAAGA
Statistics
Matches: 665, Mismatches: 37, Indels: 58
0.88 0.05 0.08
Matches are distributed among these distances:
165 22 0.03
166 62 0.09
170 3 0.00
171 95 0.14
172 6 0.01
174 1 0.00
175 1 0.00
176 33 0.05
177 159 0.24
178 5 0.01
180 1 0.00
182 222 0.33
183 55 0.08
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (180 bp):
TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTG
CTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTT
TGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCG
Found at i:738988 original size:28 final size:28
Alignment explanation
Indices: 738951--739042 Score: 139
Period size: 28 Copynumber: 3.3 Consensus size: 28
738941 GAAAGAGAGT
* *
738951 TGGAATATTCCTTTGAAAATAACGGGGC
1 TGGAGTATTCCCTTGAAAATAACGGGGC
* *
738979 TAGAGTATTCCCTTGAAAATAACGGGGT
1 TGGAGTATTCCCTTGAAAATAACGGGGC
*
739007 TGGAGTGTTCCCTTGAAAATAACGGGGC
1 TGGAGTATTCCCTTGAAAATAACGGGGC
739035 TGGAGTAT
1 TGGAGTAT
739043 CCCCGGTTGT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 56 1.00
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.28
Consensus pattern (28 bp):
TGGAGTATTCCCTTGAAAATAACGGGGC
Found at i:739214 original size:28 final size:29
Alignment explanation
Indices: 739158--739234 Score: 88
Period size: 28 Copynumber: 2.7 Consensus size: 29
739148 GGAATAAAGC
* *
739158 CGGGGTTGGAGTAGCCCC-TTGGAAGTAA
1 CGGGGTTGGAGTATCCCCGATGGAAGTAA
739186 CGGGGTTGGAGTATCCCCGAT-G-AGATAA
1 CGGGGTTGGAGTATCCCCGATGGAAG-TAA
* *
739214 CGAGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
739235 TGTGAAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 2 0.05
28 40 0.93
29 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.36, T:0.23
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCCCGATGGAAGTAA
Found at i:739279 original size:52 final size:51
Alignment explanation
Indices: 739217--739439 Score: 207
Period size: 52 Copynumber: 4.3 Consensus size: 51
739207 GAGATAACGA
* *
739217 GGTTGGAGTATCCTCGATTGTGAAAAATTAGTATTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTAGT-GTTTTGGAAATAAAATCAG
* * * *
739269 AGTTGGAGTATCCCCGATTAAAG-GAAAAATTGGTGTTTTGAAAACAAAA-CTAG
1 GGTTGGAGTATCCCCGATT---GTGAAAAATTAGTGTTTTGGAAATAAAATC-AG
** * * * * *
739322 GGTTTTAGTATCCTCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGT-GAAAAATTAGTGTTTTGGAAATAAAATCAG
* * * * * *
739374 GGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCAG
739425 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
739440 TCAGAAATAA
Statistics
Matches: 137, Mismatches: 27, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
50 1 0.01
51 38 0.28
52 57 0.42
53 30 0.22
54 10 0.07
55 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCAG
Found at i:739485 original size:27 final size:27
Alignment explanation
Indices: 739422--739496 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 27
739412 GAAATAAAGT
*
739422 CGGGGTTGGAGTATCCCCTCAGAAATAA
1 CGGGGTTGGAGTATCCCC-GAGAAATAA
*
739450 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGA-GAAATAA
739477 CGGGGTTGGAGTATCCCCGA
1 CGGGGTTGGAGTATCCCCGA
739497 CTGTGAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.23, C:0.21, G:0.33, T:0.23
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGAGAAATAA
Found at i:741979 original size:13 final size:13
Alignment explanation
Indices: 741961--741986 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
741951 ACAAAGATCC
741961 ATGTATCGATACA
1 ATGTATCGATACA
741974 ATGTATCGATACA
1 ATGTATCGATACA
741987 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:741998 original size:33 final size:33
Alignment explanation
Indices: 741940--742006 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
741930 AAAATTTCCA
***
741940 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
* *
741973 AATGTATCGATACACAGAAAAATGTATTGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
742006 A
1 A
742007 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:742922 original size:61 final size:60
Alignment explanation
Indices: 742606--743453 Score: 1061
Period size: 61 Copynumber: 14.4 Consensus size: 60
742596 AAACGAAATA
* * *
742606 CGTCCTGCTCTCTGAGGACAGAGAAG-G-CATCCAACTTGTGTGGGCTTT----GA-AAGG
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCA-CCAACTTGTGTGGGCTTTAAAAGAGAAGG
* * * * *
742660 AGTCCTACTCTTTGGGGACT-GAAAGGTGCCACCAACTTATGTGGGCTTT---A-AG-AGG
1 CGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGG
* * * *
742715 TGTCCTGCTCTTTGAGGATTAGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAG-GTA--
1 CGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGG
* * * *
742773 --TCCTGCTCTTTGGGGAAT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGG
1 CGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGG
* * * *
742831 CATCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGG
742892 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGG
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AGAAGG
* * *
742953 TGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGG
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGG
** * *
743013 CGTCCCACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGG
*
743074 CGTCCTGCTCTTTGAGGACTGGGGAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGG
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AGAAGG
743135 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGG
743196 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT---A-AG-AGG
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGG
* * *
743251 CGTCCTACTCTTTGAGGACTAGGAAGCGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGG
* *
743312 TGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGCGGGCTTT---A-A-AAGG
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGG
*
743367 CGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAGG
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAGG
* * *
743428 CATCCTACTCTTTGAGGACTAGGAAG
1 CGTCCTGCTCTTTGAGGACTGGGAAG
743454 GGCTAAAAGA
Statistics
Matches: 705, Mismatches: 55, Indels: 61
0.86 0.07 0.07
Matches are distributed among these distances:
53 2 0.00
54 16 0.02
55 170 0.24
56 49 0.07
58 3 0.00
59 3 0.00
60 102 0.14
61 359 0.51
62 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (60 bp):
CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGG
Found at i:743026 original size:182 final size:181
Alignment explanation
Indices: 742607--743453 Score: 1108
Period size: 182 Copynumber: 4.8 Consensus size: 181
742597 AACGAAATAC
* * * *
742607 GTCCTGCTCTCTGAGGACAGAGAAG-G-CATCCAACTTGTGTGGGCTTT----G-AAAGGAGTCC
1 GTCCTGCTCTTTGAGGACTGGGAAGTGCCA-CCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCC
* * * *
742665 TACTCTTTGGGGACT-GAAAGGTGCCACCAACTTATGTGGGCTTT---A-AG-AGGTGTCCTGCT
65 TGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCT
*
742724 CTTTGAGGATTAGGAAGGTGCCACCAACTTGTGTGGGCTTT-----AA-AAGGT
129 CTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGT
* * * * *
742772 ATCCTGCTCTTTGGGGAAT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCATCC
1 GTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCC
* *
742836 CGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCT
65 TGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTCCTGCT
*
742901 CTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGT
129 CTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGT
* *
742954 GTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCC
1 GTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
* *
743019 ACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTC
66 GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTCCTGCTC
* * *
743084 TTTGAGGACTGGGGAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGC
130 TTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGT
*
743136 GTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
1 GTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCC
* *
743201 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT---A-AG-AGGCGTCCTACTC
65 TGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTC
* *
743261 TTTGAGGACTAGGAAGCGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGT
130 TTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGT
*
743313 GTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGCGGGCTTT-----AAAAGGCGTCCT
1 GTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
* *
743373 GCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAGGCATCCTACT
66 GCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAGGCGTCCTGCT
743437 CTTTGAGGACTAGGAAG
129 CTTTGAGGACTAGGAAG
743454 GGCTAAAAGA
Statistics
Matches: 611, Mismatches: 41, Indels: 48
0.87 0.06 0.07
Matches are distributed among these distances:
164 2 0.00
165 15 0.02
166 19 0.03
167 2 0.00
170 1 0.00
171 93 0.15
172 6 0.01
174 1 0.00
175 1 0.00
176 28 0.05
177 159 0.26
178 2 0.00
180 1 0.00
181 2 0.00
182 225 0.37
183 54 0.09
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (181 bp):
GTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCT
TTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGT
Found at i:743336 original size:116 final size:116
Alignment explanation
Indices: 742606--743453 Score: 1065
Period size: 116 Copynumber: 7.2 Consensus size: 116
742596 AAACGAAATA
* * * * * *
742606 CGTCCTGCTCTCTGAGGACAGAGAAG-G-CATCCAACTTGTGTGGGCTTTGAA-AGGAGTCCTAC
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCA-CCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGC
* * *
742668 TCTTTGGGGACTGAAAGGTGCCACCAACTTATGTGGGCTTT---A--AG-AGG
65 TCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
* * * **
742715 TGTCCTGCTCTTTGAGGATTAGGAAGGTGCCACCAACTTGTGTGGGCTTTAAA-AGGTATCCTGC
1 CGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGC
* * * *
742779 TCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGG
65 TCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
* * * *
742831 CATCCCGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTC
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT--AA--AG-AGGCGTC
*
742896 CTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGG
61 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
* *
742953 TGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCC
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAAG---AGGCGTCC
** *
743018 CACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
62 TGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
*
743074 CGTCCTGCTCTTTGAGGACTGGGGAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAGAAGGCGTC
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT---A-AAG-AGGCGTC
743139 CTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
61 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
*
743196 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGCGTCCTACT
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCT
*
743260 CTTTGAGGACTAGGAAGCGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
66 CTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
* *
743312 TGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGCGGGCTTTAAA-AGGCGTCCTGCT
1 CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCT
*
743376 CTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAGG
66 CTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
* * *
743428 CATCCTACTCTTTGAGGACTAGGAAG
1 CGTCCTGCTCTTTGAGGACTGGGAAG
743454 GGCTAAAAGA
Statistics
Matches: 659, Mismatches: 56, Indels: 41
0.87 0.07 0.05
Matches are distributed among these distances:
109 19 0.03
110 1 0.00
111 68 0.10
112 2 0.00
114 1 0.00
115 24 0.04
116 213 0.32
117 7 0.01
119 3 0.00
120 2 0.00
121 154 0.23
122 158 0.24
123 4 0.01
124 3 0.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (116 bp):
CGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCT
CTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGG
Found at i:746091 original size:33 final size:33
Alignment explanation
Indices: 746033--746099 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
746023 AAAATTTCCA
*** *
746033 AATGTATCGATACAAAGATCCATGTATTGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
746066 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
746099 A
1 A
746100 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:751764 original size:36 final size:33
Alignment explanation
Indices: 751683--751775 Score: 95
Period size: 36 Copynumber: 2.8 Consensus size: 33
751673 TACAACACTA
*
751683 TTTTTC-AAGGCTAAGATAGAAACCTCCTTATC
1 TTTTTCAAAGGCTAAGATAGAAACCTCCCTATC
**
751715 -TTTTCACAA-GCTAAGATAGTATCTCCTTCCCTATC
1 TTTTTCA-AAGGCTAAGATAG-A-AACC-TCCCTATC
751750 TTTTTCAAAGGCTAAGATAG-AACCTC
1 TTTTTCAAAGGCTAAGATAGAAACCTC
751776 TCAATCACAT
Statistics
Matches: 49, Mismatches: 5, Indels: 14
0.72 0.07 0.21
Matches are distributed among these distances:
31 5 0.10
32 12 0.24
33 5 0.10
34 2 0.04
35 9 0.18
36 16 0.33
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (33 bp):
TTTTTCAAAGGCTAAGATAGAAACCTCCCTATC
Found at i:752252 original size:22 final size:22
Alignment explanation
Indices: 752234--752275 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
752224 ACATGTAGTG
*
752234 ATACATGAACAGTGATGTATCA
1 ATACATCAACAGTGATGTATCA
752256 ATACATCAACAGTGATGTAT
1 ATACATCAACAGTGATGTAT
752276 TGACACAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (22 bp):
ATACATCAACAGTGATGTATCA
Found at i:752396 original size:33 final size:32
Alignment explanation
Indices: 752332--752397 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 32
752322 TGCCAGATTT
* *
752332 ATGTATCGATACAATGAACATATATCGATACA
1 ATGTATCGATACAATGAAAATATATCAATACA
752364 ATGTATCGATACTAA-GCAAAATATATCAATACA
1 ATGTATCGATAC-AATG-AAAATATATCAATACA
752397 A
1 A
752398 CTGGGTGTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
32 13 0.43
33 17 0.57
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.27
Consensus pattern (32 bp):
ATGTATCGATACAATGAAAATATATCAATACA
Found at i:754970 original size:20 final size:20
Alignment explanation
Indices: 754945--755022 Score: 75
Period size: 20 Copynumber: 3.8 Consensus size: 20
754935 ACTACCAAGG
754945 AAATGTATCGATACATTAAT
1 AAATGTATCGATACATTAAT
***
754965 AAATGTATCGATACATGCTT
1 AAATGTATCGATACATTAAT
*
754985 CAAATTGTATCGATACATTTAT
1 -AAA-TGTATCGATACATTAAT
* * *
755007 CATTGTATTGATACAT
1 AAATGTATCGATACAT
755023 GTAGGCAAAT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
20 29 0.62
21 4 0.09
22 14 0.30
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (20 bp):
AAATGTATCGATACATTAAT
Found at i:758800 original size:21 final size:21
Alignment explanation
Indices: 758776--758816 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
758766 TTTTATTAGT
758776 TAACTCA-TCATTTTCATTTTG
1 TAACTCACTCATTTTC-TTTTG
*
758797 TAACTCACTTATTTTCTTTT
1 TAACTCACTCATTTTCTTTT
758817 CCAACTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.22, C:0.20, G:0.02, T:0.56
Consensus pattern (21 bp):
TAACTCACTCATTTTCTTTTG
Found at i:758822 original size:21 final size:21
Alignment explanation
Indices: 758798--758838 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
758788 TTCATTTTGT
*
758798 AACTCACTTATTTTCTTTTCC
1 AACTCACTTACTTTCTTTTCC
* *
758819 AACTTATTTACTTTCTTTTC
1 AACTCACTTACTTTCTTTTC
758839 AGGAGTATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.24, G:0.00, T:0.56
Consensus pattern (21 bp):
AACTCACTTACTTTCTTTTCC
Found at i:760434 original size:32 final size:33
Alignment explanation
Indices: 760392--760478 Score: 97
Period size: 32 Copynumber: 2.6 Consensus size: 33
760382 ACTATCTTTT
760392 AAGGCTAAGATAGAAACCTCCCTATC-TTTTCA
1 AAGGCTAAGATAGAAACCTCCCTATCTTTTTCA
** * *
760424 CGGGCTAAGATAGAACCTCTCTCCCTATCTTTTTTA
1 AAGGCTAAGATAGAA--AC-CTCCCTATCTTTTTCA
760460 AAGGCTAAGATAG-AACCTC
1 AAGGCTAAGATAGAAACCTC
760479 TCAATCACTT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
32 16 0.36
33 1 0.02
34 1 0.02
35 10 0.23
36 16 0.36
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (33 bp):
AAGGCTAAGATAGAAACCTCCCTATCTTTTTCA
Found at i:760473 original size:36 final size:35
Alignment explanation
Indices: 760383--760480 Score: 116
Period size: 36 Copynumber: 2.9 Consensus size: 35
760373 CCTTATGACA
*
760383 CTATC-TTTT-AAGGCTAAGATAGAA--AC-CTCC
1 CTATCTTTTTAAAGGCTAAGATAGAACCTCTCTCC
* **
760413 CTATCTTTTCACGGGCTAAGATAGAACCTCTCTCC
1 CTATCTTTTTAAAGGCTAAGATAGAACCTCTCTCC
760448 CTATCTTTTTTAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTTAAAGGCTAAGATAGAACCTCTC
760481 AATCACTTAA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
30 5 0.09
31 3 0.05
32 13 0.24
34 1 0.02
35 9 0.16
36 24 0.44
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.33
Consensus pattern (35 bp):
CTATCTTTTTAAAGGCTAAGATAGAACCTCTCTCC
Found at i:760798 original size:20 final size:21
Alignment explanation
Indices: 760773--760817 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
760763 GGATGTATCC
760773 GTTGTA-GACAT-TATGACTGT
1 GTTGTATGACATATATGACT-T
*
760793 GTTGTATGACATATTTGACTT
1 GTTGTATGACATATATGACTT
760814 GTTG
1 GTTG
760818 GGACCTTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 6 0.27
21 10 0.45
22 6 0.27
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.44
Consensus pattern (21 bp):
GTTGTATGACATATATGACTT
Found at i:761048 original size:13 final size:13
Alignment explanation
Indices: 761030--761056 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
761020 AATACAATTC
761030 ATAATGTATCGAT
1 ATAATGTATCGAT
761043 ATAATGTATCGAT
1 ATAATGTATCGAT
761056 A
1 A
761057 CTAAGCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.37
Consensus pattern (13 bp):
ATAATGTATCGAT
Found at i:768409 original size:20 final size:20
Alignment explanation
Indices: 768386--768424 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
768376 TTCAAGCATT
* *
768386 TATCGATAGATTCACTTATG
1 TATCGATACATTAACTTATG
768406 TATCGATACATTAACTTAT
1 TATCGATACATTAACTTAT
768425 TGCATCAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.41
Consensus pattern (20 bp):
TATCGATACATTAACTTATG
Found at i:772482 original size:155 final size:154
Alignment explanation
Indices: 772273--772822 Score: 515
Period size: 155 Copynumber: 3.5 Consensus size: 154
772263 AGTATCTTGG
* ** *
772273 TAACCCTAAAGGACTTGAATACAATCTAAAGTAAAGATGCTAGCCCTAATGTGTACCTTCAACAT
1 TAACCTTAAAGGACTTGAATACAATCTAAAGTAAAGAACCTATCCCTAATGTGTACCTTCAACAT
* *
772338 GAAAGTATCTAAGTAATCATACAAAAATTAGTTTTAATGAAAAATTACCAAAATACCTTTGAGAT
66 GAAAGTATCCAAGTAATCATACAAAACTTAGTTTTAATGAAAAATTACCAAAATACCTTTGAG-T
* *
772403 ATACCTTTGATGTGAAAGTATCCTAA
130 ATAACTTTGATATGAAAGTATCCT-A
* *
772429 TAA-TTCTAAAGGACTTGAATA-AATCTAAAAG-AACA-AACCTATCCCTAATGTGTACCTTCGA
1 TAACCT-TAAAGGACTTGAATACAATCT-AAAGTAA-AGAACCTATCCCTAATGTGTACCTTCAA
* * * * * * * * * **
772490 CGTGAAAGCATCCAAATAATAAAATAAAACTTAGTTTTAATGCAAAATTATCAAAATGCTCTAGG
63 CATGAAAGTATCCAAGTAATCATACAAAACTTAGTTTTAATGAAAAATTACCAAAATAC-CTTTG
* * *
772555 TGTATAACTTCGACATGAAAGTATCCCTA
127 AGTATAACTTTGATATGAAAGTAT-CCTA
* * * * *
772584 TAACCTTAAAGGAGTTGAATACAGTCTAAAGTAAAGAAACTATCCCTAATGTATACCTTCGACAT
1 TAACCTTAAAGGACTTGAATACAATCTAAAGTAAAGAACCTATCCCTAATGTGTACCTTCAACAT
* * * * * * * *
772649 AAAAGTGTCCAGGTAAT--TACATAAGACTTCGTTCTAACGTAAAATTACC-AAATAACC-TTAA
66 GAAAGTATCCAAGTAATCATACA-AA-ACTTAGTTTTAATGAAAAATTACCAAAAT-ACCTTTGA
* * **
772710 GGTATATCTTTGATATGAAAATATCACGG
128 -GTATAACTTTGATATGAAAGTATC-CTA
* * * *
772739 TAACCTTAAAAGACTTGAATATAGTCTAAAGTAATGAACCTATCCCTAAT-TGGTACCTTCAACA
1 TAACCTTAAAGGACTTGAATACAATCTAAAGTAAAGAACCTATCCCTAATGT-GTACCTTCAACA
772803 TGAAAGTATCCAAGTAATCA
65 TGAAAGTATCCAAGTAATCA
772823 CATAGGACTT
Statistics
Matches: 314, Mismatches: 63, Indels: 33
0.77 0.15 0.08
Matches are distributed among these distances:
154 4 0.01
155 215 0.68
156 95 0.30
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (154 bp):
TAACCTTAAAGGACTTGAATACAATCTAAAGTAAAGAACCTATCCCTAATGTGTACCTTCAACAT
GAAAGTATCCAAGTAATCATACAAAACTTAGTTTTAATGAAAAATTACCAAAATACCTTTGAGTA
TAACTTTGATATGAAAGTATCCTA
Found at i:772907 original size:155 final size:156
Alignment explanation
Indices: 772261--772903 Score: 506
Period size: 155 Copynumber: 4.1 Consensus size: 156
772251 TTTCAACTTA
* ** *
772261 AAAGTATCTTGGTAACCCTAAAGGACTTGAATACAATCTAAAGTAAAGATGCTAGCCCTAATGTG
1 AAAGTATCCTGGTAACCCTAAAGGACTTGAATACAATCTAAAGTAAAGAACCTATCCCTAATGTG
* * * * * *
772326 TACCTTCAACATGAAAGTATCTAAGTAATCATACAAAAATTAGTTTTAATGAAAAATTACCAAAA
66 TACCTTCAACATGAAAGTATCCAAGTAATCACATAAAACTTAGTTTCAATGAAAAATTACTAAAA
* *
772391 TACCTTT-GAGATATACCTTTGATGTG
131 TACCTTTAGAGA-ATACATTTGATATG
** **
772417 AAAGTATCCTAATAATTCTAAAGGACTTGAATA-AATCTAAAAG-AACA-AACCTATCCCTAATG
1 AAAGTATCCTGGTAACCCTAAAGGACTTGAATACAATCT-AAAGTAA-AGAACCTATCCCTAATG
* * * * * * * *
772479 TGTACCTTCGACGTGAAAGCATCCAAATAATAAAATAAAACTTAGTTTTAATGCAAAATTA-TCA
64 TGTACCTTCAACATGAAAGTATCCAAGTAATCACATAAAACTTAGTTTCAATGAAAAATTACT-A
* * * * * *
772543 AAAT-GCTCTAGGTGTATA-ACTTCGACATG
128 AAATACCTTTA-GAGAATACA-TTTGATATG
* * * * *
772572 AAAGTATCCCT-ATAACCTTAAAGGAGTTGAATACAGTCTAAAGTAAAGAAACTATCCCTAATGT
1 AAAGTAT-CCTGGTAACCCTAAAGGACTTGAATACAATCTAAAGTAAAGAACCTATCCCTAATGT
* * * * * * * * * * *
772636 ATACCTTCGACATAAAAGTGTCCAGGTAATTACATAAGACTTCG-TTCTAACGTAAAATTAC-CA
65 GTACCTTCAACATGAAAGTATCCAAGTAATCACATAAAACTTAGTTTC-AATGAAAAATTACTAA
* *
772699 AATAACCTTAAG-GTATATC-TTTGATATG
129 AAT-ACCTTTAGAGAATA-CATTTGATATG
* * * * * *
772727 AAAATATCAC-GGTAACCTTAAAAGACTTGAATATAGTCTAAAGTAATGAACCTATCCCTAAT-T
1 AAAGTATC-CTGGTAACCCTAAAGGACTTGAATACAATCTAAAGTAAAGAACCTATCCCTAATGT
** * *
772790 GGTACCTTCAACATGAAAGTATCCAAGTAATCACATAGGACTTGGTTTCAA-AAAAAATTACTAA
65 -GTACCTTCAACATGAAAGTATCCAAGTAATCACATAAAACTTAGTTTCAATGAAAAATTACTAA
* * *
772854 AATGCCTTTAGAGAATACATTTGTTTTG
129 AATACCTTTAGAGAATACATTTGATATG
* *
772882 AAAGTATCTTGGTGACCCTAAA
1 AAAGTATCCTGGTAACCCTAAA
772904 AGACATAAAA
Statistics
Matches: 383, Mismatches: 80, Indels: 49
0.75 0.16 0.10
Matches are distributed among these distances:
154 20 0.05
155 254 0.66
156 106 0.28
157 3 0.01
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (156 bp):
AAAGTATCCTGGTAACCCTAAAGGACTTGAATACAATCTAAAGTAAAGAACCTATCCCTAATGTG
TACCTTCAACATGAAAGTATCCAAGTAATCACATAAAACTTAGTTTCAATGAAAAATTACTAAAA
TACCTTTAGAGAATACATTTGATATG
Found at i:777534 original size:13 final size:13
Alignment explanation
Indices: 777516--777541 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
777506 ACACCAAAGT
777516 ATGTATCGATACA
1 ATGTATCGATACA
777529 ATGTATCGATACA
1 ATGTATCGATACA
777542 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:777539 original size:33 final size:33
Alignment explanation
Indices: 777497--777561 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
777487 TAGCCAAACT
* *
777497 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
777530 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
777562 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:779951 original size:154 final size:154
Alignment explanation
Indices: 779775--780212 Score: 479
Period size: 156 Copynumber: 2.8 Consensus size: 154
779765 CGTAAAAATA
* * *
779775 CCAATACTCTTGAAGGACTTAAAAAGGATTATGGATGGGATGAACCTATCTTAAATGCACACTTT
1 CCAATACCCTTAAAGGACTTAAAAAGGATTATAGATGGGATGAACCTATCTTAAAT-CACACTTT
* * * * **
779840 CGGCATAAAAGTAGACCCGGTGACAACCTAAGACCCAATTTTAAAAAATTACGAAAATACTTATA
65 CGGCATAAAAGTAGACCCAGTGACAACCTAGGACCCGATTTTAAAAAATTATGAAAATACCCATA
779905 GGGGATACCTTTAACTTAGAAGTGC
130 GGGGATACCTTTAACTTAGAAGTGC
** * * *
779930 CTGATA-CCTCT-AAGGATTTAAAAATGATTATAGATGGGATGAACCTATCTTAAATACCCACCT
1 CCAATACCCT-TAAAGGACTTAAAAAGGATTATAGATGGGATGAACCTATCTTAAAT-CACA-CT
* * * * * * *
779993 TT-GGCATAAATGCAGACCCAATGACAACCTAGGACTCGGATATGAAAACATTATGAAAATACCC
63 TTCGGCATAAAAGTAGACCCAGTGACAACCTAGGAC-CCGATTTTAAAAAATTATGAAAATACCC
* *
780057 CTAGGGGATATCTTTAACTTAGAAGTGC
127 ATAGGGGATACCTTTAACTTAGAAGTGC
* * * * * * *
780085 CCAATACCCTTAAAGGACTTACAAAGAATTATAGATAGGATTAACCTATCCTAAATAATCACCTT
1 CCAATACCCTTAAAGGACTTAAAAAGGATTATAGATGGGATGAACCTATCTTAAATCA-CACTTT
** *
780150 CAACATAAAAGT-GAACCCAGTGACAACCTAGGACTCGATTTTGAAAAAATTATGAAAATACCC
65 CGGCATAAAAGTAG-ACCCAGTGACAACCTAGGACCCGATTTT-AAAAAATTATGAAAATACCC
780213 TTAAGATATA
Statistics
Matches: 229, Mismatches: 45, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
154 74 0.32
155 68 0.30
156 87 0.38
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (154 bp):
CCAATACCCTTAAAGGACTTAAAAAGGATTATAGATGGGATGAACCTATCTTAAATCACACTTTC
GGCATAAAAGTAGACCCAGTGACAACCTAGGACCCGATTTTAAAAAATTATGAAAATACCCATAG
GGGATACCTTTAACTTAGAAGTGC
Found at i:781378 original size:52 final size:52
Alignment explanation
Indices: 781322--781561 Score: 227
Period size: 52 Copynumber: 4.6 Consensus size: 52
781312 AATGTTGCTA
* * * * * *
781322 GCCTTAAATCAGCACATTGGCACCTTT-TTATTTCTTAAATCCAATATCGTTG
1 GCCTTGAATCAGCACATTAGCACCTTTGTCA-TTCTTAAGTCCAATGTCGATG
* * *
781374 GCCTTGAATCAGCATATTAGCACCTTTGTCA-TCTTAAGTTCAATGTCGCTG
1 GCCTTGAATCAGCACATTAGCACCTTTGTCATTCTTAAGTCCAATGTCGATG
* *
781425 GCTTTGAATCAGCATATTAGCACCTTTGTCA-TCTTTAAGTCCAATGTCGATG
1 GCCTTGAATCAGCACATTAGCACCTTTGTCATTC-TTAAGTCCAATGTCGATG
* * * * * * * *
781477 TCCTTGAATCAACACATTGGCACCTATGTCA-TCTTGAAGCCCAATATTGCTG
1 GCCTTGAATCAGCACATTAGCACCTTTGTCATTCTT-AAGTCCAATGTCGATG
* * *
781529 GCCTTGAATTAGCATATTAGCACCTTTATCATT
1 GCCTTGAATCAGCACATTAGCACCTTTGTCATT
781562 TTTCTCATCT
Statistics
Matches: 156, Mismatches: 28, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
51 50 0.32
52 103 0.66
53 3 0.02
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (52 bp):
GCCTTGAATCAGCACATTAGCACCTTTGTCATTCTTAAGTCCAATGTCGATG
Found at i:781500 original size:103 final size:104
Alignment explanation
Indices: 781322--781560 Score: 275
Period size: 103 Copynumber: 2.3 Consensus size: 104
781312 AATGTTGCTA
* * * * * * *
781322 GCCTTAAATCAGCACATTGGCACCTTTTTATTTCTTAAATCCAATATCGTTGGCCTTGAATCAGC
1 GCCTTGAATCAGCATATTAGCACCTTTTCATCTCTTAAATCCAATATCGATGGCCTTGAATCAAC
* * ** *
781387 ATATTAGCACCTTTGTCATCTT-AAGTTCAATGTCGCTG
66 ACATTAGCACCTATGTCATCTTGAAGCCCAATATCGCTG
* * * *
781425 GCTTTGAATCAGCATATTAGCACCTTTGTCATCT-TTAAGTCCAATGTCGATGTCCTTGAATCAA
1 GCCTTGAATCAGCATATTAGCACCTTT-TCATCTCTTAAATCCAATATCGATGGCCTTGAATCAA
* *
781489 CACATTGGCACCTATGTCATCTTGAAGCCCAATATTGCTG
65 CACATTAGCACCTATGTCATCTTGAAGCCCAATATCGCTG
*
781529 GCCTTGAATTAGCATATTAGCACCTTTATCAT
1 GCCTTGAATCAGCATATTAGCACCTTT-TCAT
781561 TTTTCTCATC
Statistics
Matches: 113, Mismatches: 21, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
103 68 0.60
104 45 0.40
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (104 bp):
GCCTTGAATCAGCATATTAGCACCTTTTCATCTCTTAAATCCAATATCGATGGCCTTGAATCAAC
ACATTAGCACCTATGTCATCTTGAAGCCCAATATCGCTG
Found at i:782516 original size:20 final size:21
Alignment explanation
Indices: 782473--782525 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
782463 TAAATAAATA
782473 TATCGATACATTTACTATTTG
1 TATCGATACATTTACTATTTG
*
782494 TATCGATACA-TTATTCA-TTG
1 TATCGATACATTTACT-ATTTG
782514 TATCGATACATT
1 TATCGATACATT
782526 CTGGGTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.30, C:0.15, G:0.09, T:0.45
Consensus pattern (21 bp):
TATCGATACATTTACTATTTG
Found at i:800225 original size:20 final size:20
Alignment explanation
Indices: 800202--800249 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
800192 TCCCCTGCCA
*
800202 AAAAAAATACAAAACAA-AAC
1 AAAAAAA-ACAAAAAAACAAC
800222 AAAAAAAACAAAAAAACAAC
1 AAAAAAAACAAAAAAACAAC
800242 AACAAAAA
1 AA-AAAAA
800250 GGGTCCGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 8 0.32
20 12 0.48
21 5 0.20
ACGTcount: A:0.83, C:0.15, G:0.00, T:0.02
Consensus pattern (20 bp):
AAAAAAAACAAAAAAACAAC
Found at i:800226 original size:11 final size:11
Alignment explanation
Indices: 800200--800249 Score: 50
Period size: 10 Copynumber: 4.5 Consensus size: 11
800190 CATCCCCTGC
*
800200 CAAAAAAAATA
1 CAAAAAAAACA
*
800211 CAAAACAAA-A
1 CAAAAAAAACA
800221 CAAAAAAAACA
1 CAAAAAAAACA
800232 -AAAAAACAACAA
1 CAAAAAA-AAC-A
800244 CAAAAA
1 CAAAAA
800250 GGGTCCGAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 15 0.45
11 12 0.36
12 1 0.03
13 5 0.15
ACGTcount: A:0.82, C:0.16, G:0.00, T:0.02
Consensus pattern (11 bp):
CAAAAAAAACA
Found at i:800229 original size:14 final size:14
Alignment explanation
Indices: 800202--800249 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
800192 TCCCCTGCCA
800202 AAAAAAATACAAAAC
1 AAAAAAA-ACAAAAC
800217 AAAACAAAA-AAAAC
1 AAAA-AAAACAAAAC
800231 -AAAAAAACAACAAC
1 AAAAAAAACAA-AAC
800245 AAAAA
1 AAAAA
800250 GGGTCCGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 4 0.14
13 5 0.17
14 8 0.28
15 9 0.31
16 3 0.10
ACGTcount: A:0.83, C:0.15, G:0.00, T:0.02
Consensus pattern (14 bp):
AAAAAAAACAAAAC
Found at i:801703 original size:29 final size:29
Alignment explanation
Indices: 801670--801991 Score: 407
Period size: 29 Copynumber: 11.1 Consensus size: 29
801660 CATTCCTCAC
*
801670 CTTTTCCAAAGCCCACAAGTTAGTGGCAT
1 CTTTTCCAAAGCCCACAAGTCAGTGGCAT
*
801699 CTTTTCCAAAGCCCACAAGTCAGTGGCAA
1 CTTTTCCAAAGCCCACAAGTCAGTGGCAT
* * *
801728 C-CTTCAAAAGCCCACAAGTCCGTGGCACT
1 CTTTTCCAAAGCCCACAAGTCAGTGGCA-T
801757 CTTTTCCAAAGCCCACAAGTCAGTGGCACT
1 CTTTTCCAAAGCCCACAAGTCAGTGGCA-T
801787 CTTTTCCAAAGCCCACAAGTCAGTGGCAT
1 CTTTTCCAAAGCCCACAAGTCAGTGGCAT
801816 CTTTTCCAAAGCCCACAAGTCAGTGGCAT
1 CTTTTCCAAAGCCCACAAGTCAGTGGCAT
* *
801845 CTTTTCAAAAGCCCACAAGTCAGTGGCAA
1 CTTTTCCAAAGCCCACAAGTCAGTGGCAT
* * *
801874 C-CTTCAAAAGCCCACAAGTCAATGGCACT
1 CTTTTCCAAAGCCCACAAGTCAGTGGCA-T
* * *
801903 TTTTTCCAAAGCCCACAAGTTAGTGGTAT
1 CTTTTCCAAAGCCCACAAGTCAGTGGCAT
* * *
801932 CTTTTCAAAAGCCCACAAGTCAGTGACAA
1 CTTTTCCAAAGCCCACAAGTCAGTGGCAT
* * * **
801961 C-CTTCAAAAGCACACAAGTTGGTGGCAT
1 CTTTTCCAAAGCCCACAAGTCAGTGGCAT
801989 CTT
1 CTT
801992 CATCTTTAAG
Statistics
Matches: 255, Mismatches: 33, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
28 69 0.27
29 112 0.44
30 74 0.29
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (29 bp):
CTTTTCCAAAGCCCACAAGTCAGTGGCAT
Found at i:802061 original size:43 final size:45
Alignment explanation
Indices: 801995--802123 Score: 138
Period size: 49 Copynumber: 2.8 Consensus size: 45
801985 GCATCTTCAT
*
801995 CTTTAAGTCCAATATTG-CTGGCCTTGAATCAGCATATGG-C-CAC
1 CTTTAAGTCCAATATCGTC-GGCCTTGAATCAGCATATGGACTCAC
* * *
802038 CTTTAAGTCCAATGTCGTCGGCCTTGAATCAGCACATTGGCATCTTCAT
1 CTTTAAGTCCAATATCGTCGGCCTTGAATCAGCATA-TGG-A-C-TCAC
* *
802087 CTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATAT
1 CTTTAAGTCCAATATCGTCGGCCTTGAATCAGCATAT
802124 TGGCATCTTT
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
43 31 0.44
44 4 0.06
47 1 0.01
48 1 0.01
49 34 0.48
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.33
Consensus pattern (45 bp):
CTTTAAGTCCAATATCGTCGGCCTTGAATCAGCATATGGACTCAC
Found at i:802110 original size:49 final size:49
Alignment explanation
Indices: 801983--802754 Score: 544
Period size: 52 Copynumber: 15.6 Consensus size: 49
801973 CACAAGTTGG
* * *
801983 TGGCATCTTCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATA-
1 TGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
*
802031 TGG---C--CACCTTTAAGTCCAATGTCG-TCGGCCTTGAATCAGCACAT
1 TGGCATCTTCATCTTTAAGTCCAATGTCGCT-GGCCTTGAATCAGCACAT
* * * *
802075 TGGCATCTTCATCTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATAT
1 TGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* * * *
802124 TGGCATCTTTAACATTTCTTAA-CCCAATGTCGTTGGCCTTGAATCAACACAT
1 TGGCATC-TT--CATCT-TTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* * *
802176 TGGCATTCTTCTCATCTTCAAG-CCTAATGTCGCTGACCGTGAATCAGCACAT
1 TGGCA-TC-T-TCATCTTTAAGTCC-AATGTCGCTGGCCTTGAATCAGCACAT
** * * * * * * * *
802228 TAACATTCTAACCATCTTTAAGCCCAATATCACAGGTCTTGGATCAGCATAT
1 TGGCA-TCT--TCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* * * * *
802280 TGGCACCTT-GTCTCTAAGACCAATGTCGCTGGCCTTGAATCAACACAT
1 TGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* *
802328 TGG------CA----TAAG-CCTAATATCGCTGGCCTTGAATCAGCATAT
1 TGGCATCTTCATCTTTAAGTCC-AATGTCGCTGGCCTTGAATCAGCACAT
* * * * *
802367 TGGCACCTT-ATCTTTAAGACCAATGTCGCTAGCCTTGAATCAACATAT
1 TGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* * *
802415 TGGCACCTTTGTCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCAGTACAT
1 TGGCA--TCT-TCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* *
802467 TGGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACAT
1 TGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* * *
802516 TGGCACCTTAACCATCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACAT
1 TGGCATCTT---CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* * *** *
802568 TGGCACCTTCATCTTTAAGTCCAATATTTTTGGCCTTGAATCAGCATAT
1 TGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* * * * * *
802617 TGGCATCTTTAACATTCCTAAGCCCAATGTTGCTAGCCATGAATCAGCACAT
1 TGGCATCTTCATC-TT--TAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* * * * *
802669 TGTCATTCTTCGCATCTTTGAGCCCAATGTTGCTGGCCATGAATCAGCACAT
1 TGGCA-TCTT--CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
* * * *
802721 TGTCATTCTTCGCATCTTTGAGCCCAATATCGCT
1 TGGCA-TCTT--CATCTTTAAGTCCAATGTCGCT
802755 AGCCGCATAT
Statistics
Matches: 586, Mismatches: 94, Indels: 84
0.77 0.12 0.11
Matches are distributed among these distances:
38 2 0.00
39 31 0.05
42 1 0.00
43 33 0.06
44 4 0.01
45 1 0.00
47 1 0.00
48 68 0.12
49 133 0.23
50 7 0.01
51 9 0.02
52 277 0.47
53 14 0.02
54 3 0.01
55 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (49 bp):
TGGCATCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
Found at i:802392 original size:87 final size:87
Alignment explanation
Indices: 802246--802419 Score: 267
Period size: 87 Copynumber: 2.0 Consensus size: 87
802236 TAACCATCTT
* * * *
802246 TAAGCCCAATATCACAGGTCTTGGATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTG
1 TAAGCCCAATATCACAGGCCTTGAATCAGCATATTGGCACCTTATCTCTAAGACCAATGTCGCTA
802311 GCCTTGAATCAACACATTGGCA
66 GCCTTGAATCAACACATTGGCA
* * * *
802333 TAAGCCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTATCTTTAAGACCAATGTCGCTA
1 TAAGCCCAATATCACAGGCCTTGAATCAGCATATTGGCACCTTATCTCTAAGACCAATGTCGCTA
*
802398 GCCTTGAATCAACATATTGGCA
66 GCCTTGAATCAACACATTGGCA
802420 CCTTTGTCAT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 78 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (87 bp):
TAAGCCCAATATCACAGGCCTTGAATCAGCATATTGGCACCTTATCTCTAAGACCAATGTCGCTA
GCCTTGAATCAACACATTGGCA
Found at i:802512 original size:101 final size:101
Alignment explanation
Indices: 802333--802714 Score: 426
Period size: 101 Copynumber: 3.8 Consensus size: 101
802323 CACATTGGCA
* * * *
802333 TAAGCCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-ATCTTTAAGACCAATGTCGCT
1 TAAGACTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCT
* **
802397 AGCCTTGAATCAACATATTGGCACCTTTGTCATCTT
66 GGCCTTGAATCAACATATTGGCACCTTTACCATCTT
* *
802433 TAAGTCTAATGTCGCTGGCCTTGAATCAGTACATTGGCACCTTCATCTTTAAGTCCAATGTCGCT
1 TAAGACTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCT
* *
802498 GGCCTTGAATCAACACATTGGCACCTTAACCATCTT
66 GGCCTTGAATCAACATATTGGCACCTTTACCATCTT
* * * ***
802534 TAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATTTTT
1 TAAGACTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCT
* * * *
802599 GGCCTTGAATCAGCATATTGGCATCTTTAACAT-TCC
66 GGCCTTGAATCAACATATTGGCACCTTTACCATCT-T
* * * * * * * * * *
802635 TAAGCCCAATGTTGCTAGCCATGAATCAGCACATTGTCATTCTTCGCATCTTTGAGCCCAATGTT
1 TAAGACTAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTT--CATCTTTAAGTCCAATGTC
*
802700 GCTGGCCATGAATCA
63 GCTGGCCTTGAATCA
802715 GCACATTGTC
Statistics
Matches: 242, Mismatches: 35, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
100 40 0.17
101 171 0.71
102 3 0.01
104 28 0.12
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (101 bp):
TAAGACTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCT
GGCCTTGAATCAACATATTGGCACCTTTACCATCTT
Found at i:802644 original size:153 final size:150
Alignment explanation
Indices: 802333--802754 Score: 440
Period size: 153 Copynumber: 2.8 Consensus size: 150
802323 CACATTGGCA
* * *
802333 TAAGCCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--ATCTTTAAGACCAATGTCGC
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCCATCTTTAAGACCAATGTCGC
* * * *
802396 TAGCCTTGAATCAACATATTGGCACCTTTGTCATCTTTAAGTCTAATGTCGCTGGCCTTGAATCA
66 TAGCCTTGAATCAGCACATTGGCACC-TTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCA
* *
802461 GTACATTGGCACCTTCATCTT
130 GCACATTGGCACCTTCAACTT
* *
802482 TAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTTAACCATCTTTAAGACCAATGTC
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT--CCATCTTTAAGACCAATGTC
***
802547 GCTAGCCTTGAATCAGCACATTGGCACC-T-TCATCTTTAAGTCCAATATTTTTGGCCTTGAATC
64 GCTAGCCTTGAATCAGCACATTGGCACCTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATC
* * *
802610 AGCATATTGGCATCTTTAACATT
129 AGCACATTGGCACCTTCAAC-TT
* * * * * * *
802633 CCTAAGCCCAATGTTGCTAGCCATGAATCAGCACATTGTCATTCTTCGCATCTTTGAGCCCAATG
1 --TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTTC-CATCTTTAAGACCAATG
* * * * * * *
802698 TTGCTGGCCATGAATCAGCACATTGTCATTCTTCG-CATCTTTGAGCCCAATATCGCT
62 TCGCTAGCCTTGAATCAGCACATTGGCA-CCTT-GTCATCTTTAAGTCCAATATCGCT
802755 AGCCGCATAT
Statistics
Matches: 224, Mismatches: 36, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
149 38 0.17
150 44 0.20
151 3 0.01
152 1 0.00
153 116 0.52
154 4 0.02
155 1 0.00
156 17 0.08
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.32
Consensus pattern (150 bp):
TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCCATCTTTAAGACCAATGTCGC
TAGCCTTGAATCAGCACATTGGCACCTTGTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
CACATTGGCACCTTCAACTT
Found at i:803499 original size:19 final size:21
Alignment explanation
Indices: 803454--803507 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
803444 TTTCAACAAT
803454 TTGTATCGATACAAATAGTAA
1 TTGTATCGATACAAATAGTAA
* *
803475 TTGTATCGATACATA-AGT-G
1 TTGTATCGATACAAATAGTAA
803494 TTGTATCGATACAA
1 TTGTATCGATACAA
803508 TGTATCGCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 13 0.43
20 3 0.10
21 14 0.47
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (21 bp):
TTGTATCGATACAAATAGTAA
Found at i:803578 original size:13 final size:13
Alignment explanation
Indices: 803560--803584 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
803550 TTACTCAATG
803560 TATCGATACATTA
1 TATCGATACATTA
803573 TATCGATACATT
1 TATCGATACATT
803585 GATCTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:803582 original size:33 final size:33
Alignment explanation
Indices: 803540--803603 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
803530 CAAGGAAATG
803540 TATCGATACATT-ACTCAATGTATCGATACATTA
1 TATCGATACATTGA-TCAATGTATCGATACATTA
**
803573 TATCGATACATTGATCTTTGTATCGATACAT
1 TATCGATACATTGATCAATGTATCGATACAT
803604 CTGGGAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 27 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (33 bp):
TATCGATACATTGATCAATGTATCGATACATTA
Found at i:805587 original size:23 final size:23
Alignment explanation
Indices: 805557--805604 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
805547 CAAATCATTC
805557 CAAAATCAATTTAGAAAGTAGGA
1 CAAAATCAATTTAGAAAGTAGGA
805580 CAAAATCAATTTAGAAAGTAGGA
1 CAAAATCAATTTAGAAAGTAGGA
805603 CA
1 CA
805605 GCGCGATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.52, C:0.10, G:0.17, T:0.21
Consensus pattern (23 bp):
CAAAATCAATTTAGAAAGTAGGA
Found at i:815078 original size:13 final size:13
Alignment explanation
Indices: 815062--815086 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
815052 CAAGAAAATG
815062 TATCGATACATTA
1 TATCGATACATTA
815075 TATCGATACATT
1 TATCGATACATT
815087 GACCTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:821423 original size:21 final size:21
Alignment explanation
Indices: 821397--821452 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
821387 TTTTTATCCA
821397 AATGTATCGATACATTTGTAC
1 AATGTATCGATACATTTGTAC
* *
821418 AATGTATCGATACTTTTGTAG
1 AATGTATCGATACATTTGTAC
821439 AATGTATCGATACA
1 AATGTATCGATACA
821453 AGGTCCCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAC
Found at i:821539 original size:19 final size:18
Alignment explanation
Indices: 821484--821573 Score: 57
Period size: 19 Copynumber: 5.1 Consensus size: 18
821474 TTGATTTTCA
821484 ATAA-TTTGTATCGATAC
1 ATAAGTTTGTATCGATAC
* * *
821501 ATTCAGTAAATGTATTGATAC
1 A-TAAGT--TTGTATCGATAC
821522 ATAAGTGTTGTATCGATAC
1 ATAAGT-TTGTATCGATAC
821541 --AA---TGTATCGATAC
1 ATAAGTTTGTATCGATAC
*
821554 ATAAGTTTTGTATTGATAC
1 ATAAG-TTTGTATCGATAC
821573 A
1 A
821574 ATGTATCACT
Statistics
Matches: 55, Mismatches: 8, Indels: 18
0.68 0.10 0.22
Matches are distributed among these distances:
13 11 0.20
15 2 0.04
17 3 0.05
18 2 0.04
19 22 0.40
20 4 0.07
21 11 0.20
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.39
Consensus pattern (18 bp):
ATAAGTTTGTATCGATAC
Found at i:821548 original size:13 final size:13
Alignment explanation
Indices: 821530--821554 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
821520 ACATAAGTGT
821530 TGTATCGATACAA
1 TGTATCGATACAA
821543 TGTATCGATACA
1 TGTATCGATACA
821555 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:821553 original size:32 final size:32
Alignment explanation
Indices: 821509--821580 Score: 117
Period size: 32 Copynumber: 2.2 Consensus size: 32
821499 ACATTCAGTA
*
821509 AATGTATTGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
* *
821541 AATGTATCGATACATAAGTTTTGTATTGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
821573 AATGTATC
1 AATGTATC
821581 ACTACGAAGC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.39
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:821642 original size:20 final size:21
Alignment explanation
Indices: 821607--821651 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 21
821597 CAAGGAAATG
821607 CATCGATACATTGTATCGATA
1 CATCGATACATTGTATCGATA
*
821628 CATCGAT-CTTTGTATCGATA
1 CATCGATACATTGTATCGATA
821648 CATC
1 CATC
821652 TAGGAAGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (21 bp):
CATCGATACATTGTATCGATA
Found at i:824128 original size:79 final size:79
Alignment explanation
Indices: 824017--824488 Score: 641
Period size: 79 Copynumber: 6.0 Consensus size: 79
824007 CAGCTCCGAT
* * *
824017 TTTATTTTCAAAATACTAATTT-TCTATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGA
1 TTTATTTCCAAAATATTAATTTCTC-ATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGA
824081 TACTCCAACCCCTGC
65 TACTCCAACCCCTGC
* * *
824096 TTTA-TTCTTAAAATATTGATTTCTAATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGA
1 TTTATTTC-CAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGA
*
824160 TACTCCAACCCCAGC
65 TACTCCAACCCCTGC
* *
824175 TTTATTTCCAAAATATTAATTTCTCATAATTGGGGATACTCCAACCCCATTATTTTCGAGGGGAT
1 TTTATTTCCAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGAT
*
824240 ACTCGAACCCC-GAC
66 ACTCCAACCCCTG-C
*
824254 TTTATTTCCAAAATATTAATTTCTCATAA-CTAGGGATACTCCAACCCCGTTATTTTCGAGGGGA
1 TTTATTTCCAAAATATTAATTTCTCATAATC-GGGGATACTCCAACCCCGTTATTTTCGAGGGGA
*
824318 TACTCCAACCCCTGT
65 TACTCCAACCCCTGC
824333 TTTATTTCCAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGAT
1 TTTATTTCCAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGAT
* * *
824398 ACTTCAACCCCGGT
66 ACTCCAACCCCTGC
* * * * * * *
824412 TTTATTTTCAAAAACATCAATTTTTCACAATCGAGGATACTCCAACCTCGTTA-TTTC-ATCGGG
1 TTTA-TTTCCAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGA--GGG
824475 GATACTCCAACCCC
63 GATACTCCAACCCC
824489 ATTACCTCCT
Statistics
Matches: 354, Mismatches: 29, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
78 4 0.01
79 287 0.81
80 63 0.18
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
TTTATTTCCAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGAT
ACTCCAACCCCTGC
Found at i:824477 original size:28 final size:28
Alignment explanation
Indices: 824441--824516 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
824431 ATTTTTCACA
* * * **
824441 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCATTACCTC
824469 ATCGGGGATACTCCAACCCCATTACCTC
1 ATCGGGGATACTCCAACCCCATTACCTC
* *
824497 CTAGGGGATACTCCAACCCC
1 ATCGGGGATACTCCAACCCC
824517 GGTTTTATTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.25, C:0.36, G:0.16, T:0.24
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCATTACCTC
Found at i:824484 original size:108 final size:107
Alignment explanation
Indices: 824361--824596 Score: 283
Period size: 107 Copynumber: 2.2 Consensus size: 107
824351 ATTTCTCATA
** * * *
824361 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTTCAACCCCGGTTTTATTTTCAAAAA
1 ATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGTTTTA-TTCCAAAAA
* *
824426 CATCAATTTTTCACAATCGAGGATACTCCAACCTCGTTATTTC
65 CATCAATTTCTCACAATCGAGGATACTCCAACCCCGTTATTTC
* * * *
824469 ATCGGGGATACTCCAACCCCATTACCTCCTAGGGGATACTCCAACCCCGGTTTTATTCCCAAAAT
1 ATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGTTTTATTCCAAAAAC
** * * *
824534 ATTGATTTCTCATAATTGGGGATACTCCAACCCCGTTATTTC
66 ATCAATTTCTCACAATCGAGGATACTCCAACCCCGTTATTTC
*** *
824576 CGAGGGGATACTCCAATCCCG
1 ATCGGGGATACTCCAACCCCG
824597 ATTTTTTTTT
Statistics
Matches: 107, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
107 58 0.54
108 49 0.46
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (107 bp):
ATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGTTTTATTCCAAAAAC
ATCAATTTCTCACAATCGAGGATACTCCAACCCCGTTATTTC
Found at i:824524 original size:187 final size:186
Alignment explanation
Indices: 824286--824678 Score: 547
Period size: 187 Copynumber: 2.1 Consensus size: 186
824276 CTCATAACTA
* ** * * *
824286 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCTGTTTTATTTCCAAAATATTA
1 GGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGTTTTATTCCCAAAATATTA
* * *
824351 ATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTTCAACCCCGGTTTTA
66 ATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTA
* * *
824416 TTTTCAAAAACATCAATTTTTCACAA-TCGAGGATACTCCAACCTCGTTA-TTTCATCG
131 TTTTC-AAAACATCAATTTCTCACAACT-GAGGATACTCCAACCCCGTTATTTTCA-AG
* *
824473 GGGATACTCCAACCCCATTACCTCCTAGGGGATACTCCAACCCCGGTTTTATTCCCAAAATATTG
1 GGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGTTTTATTCCCAAAATATTA
* * *
824538 ATTTCTCATAATTGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAATCCCGATTTTT
66 ATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTA
* * * * *
824603 TTTTCTAATCATCGATTTCTCACAACTGGGGATACTCCAGCCCCGTTATTTTCAAG
131 TTTTCAAAACATCAATTTCTCACAACTGAGGATACTCCAACCCCGTTATTTTCAAG
824659 GGGATACTCCAACCCCATTA
1 GGGATACTCCAACCCCATTA
824679 TTATCTCCAA
Statistics
Matches: 182, Mismatches: 22, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
186 55 0.30
187 127 0.70
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (186 bp):
GGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGTTTTATTCCCAAAATATTA
ATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTA
TTTTCAAAACATCAATTTCTCACAACTGAGGATACTCCAACCCCGTTATTTTCAAG
Found at i:824566 original size:79 final size:79
Alignment explanation
Indices: 824472--824705 Score: 258
Period size: 79 Copynumber: 2.9 Consensus size: 79
824462 TTATTTCATC
* ** * *
824472 GGGGATACTCCAACCCCATTACCTCCTAGGGGATACTCCAACCCCGGTTTTATTCCCAAAATATT
1 GGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTCCCAAAATATT
*
824537 GATTTCTCATAATT
66 GATTTCTCATAACT
* * * ** *
824551 GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAATCCCGATTTTTTTTTC-TAATCAT
1 GGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTCCCAAAAT-AT
* *
824615 CGATTTCTCACAACT
65 TGATTTCTCATAACT
* *
824630 GGGGATACTCCAGCCCCGTTATTTTCAAGGGGATACTCCAACCCC-ATTATTA-TCTCCAAAATA
1 GGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATT-TTATTC-CCAAAATA
*
824693 TTAAATTTCTCAT
64 TT-GATTTCTCAT
824706 CGGGAAATGT
Statistics
Matches: 126, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
78 7 0.06
79 108 0.86
80 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTCCCAAAATATT
GATTTCTCATAACT
Found at i:824724 original size:266 final size:266
Alignment explanation
Indices: 824206--824690 Score: 665
Period size: 266 Copynumber: 1.8 Consensus size: 266
824196 TCTCATAATT
** * * *
824206 GGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCGAACCCCGACTTTATTTCCAAAATATT
1 GGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATATT
*
824271 AATTTCTCATAACTAGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCTGTTTT
66 AATTTCTCATAACTAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCTGTTTT
* * *
824336 ATTTCCAAAATATTAATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACT
131 ATTTCCAAAATATCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACT
* * * *
824401 TCAACCCCGGTTTTATTTTCAAAAACATCAATTTTTCACAATCGAGGATACTCCAACCTCGTTAT
196 CCAACCCCGATTTTATTCTCAAAAACATCAATATTTCACAATCGAGGATACTCCAACCTCGTTAT
824466 TTCATC
261 TTCATC
* **
824472 GGGGATACTCCAACCCCATTACCTCCTAGGGGATACTCCAACCCCGGTTTTATTCCCAAAATATT
1 GGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATATT
* * * *
824537 GATTTCTCATAATTGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAATCCC-GATTT
66 AATTTCTCATAACTAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCTG-TTT
* * * * *
824601 TTTTTTC-TAATCATCGATTTCTCACAA-CTGGGGATACTCCAGCCCCGTTATTTTCAAGGGGAT
130 TATTTCCAAAAT-ATCAATTTCTCACAATC-GGGGATACTCCAACCCCGTTATTTTCAAGGGGAT
*
824664 ACTCCAACCCC-ATTATTA-TCTCCAAAA
193 ACTCCAACCCCGATT-TTATTCTCAAAAA
824691 TATTAAATTT
Statistics
Matches: 190, Mismatches: 25, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
265 14 0.07
266 176 0.93
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (266 bp):
GGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATATT
AATTTCTCATAACTAGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCTGTTTT
ATTTCCAAAATATCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACT
CCAACCCCGATTTTATTCTCAAAAACATCAATATTTCACAATCGAGGATACTCCAACCTCGTTAT
TTCATC
Found at i:825336 original size:20 final size:19
Alignment explanation
Indices: 825282--825337 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
825272 AAAACCCTTA
*
825282 AAAGTATCGATACACAGTTC
1 AAAGTATCGATACA-TGTTC
825302 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
825322 AATGTATCGATACATG
1 AAAGTATCGATACATG
825338 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:825413 original size:19 final size:18
Alignment explanation
Indices: 825389--825452 Score: 66
Period size: 20 Copynumber: 3.7 Consensus size: 18
825379 TAGCCAAACT
825389 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAA-A
825408 TGTATCGAT--AC---AA
1 TGTATCGATACACAAAAA
825421 TGTATCGATACACAAAAAA
1 TGTATCGATACAC-AAAAA
825440 TTGTATCGATACA
1 -TGTATCGATACA
825453 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 11 0.29
20 12 0.32
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (18 bp):
TGTATCGATACACAAAAA
Found at i:825425 original size:13 final size:13
Alignment explanation
Indices: 825407--825432 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
825397 TACACAAAAT
825407 ATGTATCGATACA
1 ATGTATCGATACA
825420 ATGTATCGATACA
1 ATGTATCGATACA
825433 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:825430 original size:32 final size:33
Alignment explanation
Indices: 825389--825452 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
825379 TAGCCAAACT
*
825389 TGTATCGATACACAAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
825421 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
825453 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:829272 original size:62 final size:64
Alignment explanation
Indices: 829160--829289 Score: 246
Period size: 62 Copynumber: 2.1 Consensus size: 64
829150 ATTAGGCCAA
829160 TTTTAAAGAAAACTTCTTATGAACTTTACAAGGGTAAAAGGCCTAACATAAGCTACTTTCAT-C
1 TTTTAAAGAAAACTTCTTATGAACTTTACAAGGGTAAAAGGCCTAACATAAGCTACTTTCATCC
829223 TTTTAAAGAAAACTTCTTATGAAC-TTACAAGGGTAAAAGGCCTAACATAAGCTACTTTCATCC
1 TTTTAAAGAAAACTTCTTATGAACTTTACAAGGGTAAAAGGCCTAACATAAGCTACTTTCATCC
829286 TTTT
1 TTTT
829290 GGATGTAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
62 37 0.56
63 29 0.44
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (64 bp):
TTTTAAAGAAAACTTCTTATGAACTTTACAAGGGTAAAAGGCCTAACATAAGCTACTTTCATCC
Found at i:829579 original size:15 final size:15
Alignment explanation
Indices: 829559--829589 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
829549 TAAAAATGTC
*
829559 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
829574 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
829589 C
1 C
829590 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:831689 original size:13 final size:13
Alignment explanation
Indices: 831671--831708 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
831661 CATTTTTCTT
831671 TGTATCGATACAA
1 TGTATCGATACAA
*
831684 TGTATCGATACAC
1 TGTATCGATACAA
831697 TGTATCGATACA
1 TGTATCGATACA
831709 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:831863 original size:20 final size:20
Alignment explanation
Indices: 831820--831865 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
831810 AAATCTTTTG
831820 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
831841 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
831861 CAAAA
1 CAAAA
831866 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:833691 original size:20 final size:19
Alignment explanation
Indices: 833637--833692 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
833627 AAAACCCTTA
*
833637 AAAGTATCGATACACAGTTC
1 AAAGTATCGATACA-TGTTC
833657 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
833677 AATGTATCGATACATG
1 AAAGTATCGATACATG
833693 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:833768 original size:19 final size:18
Alignment explanation
Indices: 833744--833807 Score: 66
Period size: 20 Copynumber: 3.7 Consensus size: 18
833734 TAGCCAAACT
833744 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAA-A
833763 TGTATCGAT--AC---AA
1 TGTATCGATACACAAAAA
833776 TGTATCGATACACAAAAAA
1 TGTATCGATACAC-AAAAA
833795 TTGTATCGATACA
1 -TGTATCGATACA
833808 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 11 0.29
20 12 0.32
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (18 bp):
TGTATCGATACACAAAAA
Found at i:833780 original size:13 final size:13
Alignment explanation
Indices: 833762--833787 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
833752 TACACAAAAT
833762 ATGTATCGATACA
1 ATGTATCGATACA
833775 ATGTATCGATACA
1 ATGTATCGATACA
833788 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:833785 original size:32 final size:33
Alignment explanation
Indices: 833744--833807 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
833734 TAGCCAAACT
*
833744 TGTATCGATACACAAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
833776 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
833808 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:842986 original size:16 final size:15
Alignment explanation
Indices: 842947--842993 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
842937 AAAAAAGAGG
842947 AAAAAAA-AAACAAA
1 AAAAAAACAAACAAA
*
842961 CAAATAAACAAACAAA
1 -AAAAAAACAAACAAA
842977 AAAAACAAC-AACAAA
1 AAAAA-AACAAACAAA
842992 AA
1 AA
842994 GGGTCGGATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 18 0.64
16 10 0.36
ACGTcount: A:0.83, C:0.15, G:0.00, T:0.02
Consensus pattern (15 bp):
AAAAAAACAAACAAA
Found at i:844698 original size:13 final size:13
Alignment explanation
Indices: 844680--844705 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
844670 TACAGCAAGT
844680 ATGTATCGATACA
1 ATGTATCGATACA
844693 ATGTATCGATACA
1 ATGTATCGATACA
844706 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:848798 original size:15 final size:15
Alignment explanation
Indices: 848778--848808 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
848768 TAAAAATGTC
*
848778 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
848793 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
848808 C
1 C
848809 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:850905 original size:13 final size:13
Alignment explanation
Indices: 850887--850912 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
850877 CATTTTTTCT
850887 TTGTATCGATACA
1 TTGTATCGATACA
850900 TTGTATCGATACA
1 TTGTATCGATACA
850913 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:855866 original size:15 final size:15
Alignment explanation
Indices: 855846--855876 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
855836 ATTTTGTTTG
*
855846 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
855861 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
855876 G
1 G
855877 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Done.