Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold501
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 850550
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 6
Found at i:341 original size:20 final size:20
Alignment explanation
Indices: 318--380 Score: 96
Period size: 20 Copynumber: 3.3 Consensus size: 20
308 CCACGTTACT
318 TGCTTTGCATCATCATTTCA
1 TGCTTTGCATCATCATTTCA
*
338 TGCTTT-CA-CAAC-TTTCA
1 TGCTTTGCATCATCATTTCA
355 TGCTTTGCATCATCATTTCA
1 TGCTTTGCATCATCATTTCA
375 TGCTTT
1 TGCTTT
381 CAAAACTTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
17 11 0.29
18 5 0.13
19 5 0.13
20 17 0.45
ACGTcount: A:0.19, C:0.25, G:0.10, T:0.46
Consensus pattern (20 bp):
TGCTTTGCATCATCATTTCA
Found at i:355 original size:17 final size:17
Alignment explanation
Indices: 333--407 Score: 105
Period size: 17 Copynumber: 4.2 Consensus size: 17
323 TGCATCATCA
333 TTTCATGCTTTCACAAC
1 TTTCATGCTTTCACAAC
*
350 TTTCATGCTTTGCATCATC
1 TTTCATGCTTT-CA-CAAC
*
369 ATTTCATGCTTTCAAAAC
1 -TTTCATGCTTTCACAAC
387 TTTCATGCTTTCACAAC
1 TTTCATGCTTTCACAAC
404 TTTC
1 TTTC
408 TTTCATTCAT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
17 31 0.61
18 4 0.08
19 5 0.10
20 11 0.22
ACGTcount: A:0.23, C:0.27, G:0.07, T:0.44
Consensus pattern (17 bp):
TTTCATGCTTTCACAAC
Found at i:365 original size:37 final size:37
Alignment explanation
Indices: 318--397 Score: 151
Period size: 37 Copynumber: 2.2 Consensus size: 37
308 CCACGTTACT
*
318 TGCTTTGCATCATCATTTCATGCTTTCACAACTTTCA
1 TGCTTTGCATCATCATTTCATGCTTTCAAAACTTTCA
355 TGCTTTGCATCATCATTTCATGCTTTCAAAACTTTCA
1 TGCTTTGCATCATCATTTCATGCTTTCAAAACTTTCA
392 TGCTTT
1 TGCTTT
398 CACAACTTTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.21, C:0.25, G:0.09, T:0.45
Consensus pattern (37 bp):
TGCTTTGCATCATCATTTCATGCTTTCAAAACTTTCA
Found at i:7576 original size:10 final size:8
Alignment explanation
Indices: 7550--7576 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
7540 GTATGCATGG
7550 TATGAATA
1 TATGAATA
7558 TATGAATA
1 TATGAATA
7566 TATGAATA
1 TATGAATA
7574 TAT
1 TAT
7577 TTGTAGGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (8 bp):
TATGAATA
Found at i:9852 original size:155 final size:152
Alignment explanation
Indices: 9426--9864 Score: 393
Period size: 155 Copynumber: 2.8 Consensus size: 152
9416 TAAAGGATAA
* * * * *
9426 GAAAATGAACTTAGGAAGATAAACCTATCCTATACACACACCCTTGGCATAAAAGTGACCTAAAG
1 GAAAATGAAC-TAGAAAGATGAACCTATCCTAAACACACACCCTTGGCATAAAAGTGACCCAATG
* ** * *
9491 ATTACCTAAGACCCGATTCAAAAAAATTTACCAAAATGCCCCT-ATGTATACCTTAGACATAAAA
65 A-TACCTAAGACTCGATTTTAAAAAA-TTACCAAAATACCCCTAAAGTATACCTTAGACATAAAA
* * * *
9555 GTATCTTAGTAACCTTAAAAGACAT
128 GCATCTCAATAACCCTAAAAGACAT
* * * * * * *
9580 GATAAA-GAA-AAAAAAGGATGAAACTATCCTAAACGCATA-TCTATGGAATAAAAGTGACCCAA
1 GA-AAATGAACTAGAAA-GATGAACCTATCCTAAACACACACCCT-TGGCATAAAAGTGACCCAA
** * * ** * * *
9642 TGACTACCTCGGACTCGATTCTAAAACAATTACCAAAATATCTTTAAAATGTACCTTGGACATAA
63 TGA-TACCTAAGACTCGATTTTAAAA-AATTACCAAAATACCCCTAAAGTATACCTTAGACATAA
*
9707 AAGCATCTCAATAGCCCTAAAAGACAT
126 AAGCATCTCAATAACCCTAAAAGACAT
* *** *
9734 GAAAATGAACCTAGAAAGATGAACCTATCCTAAACACACACCCTTAGCATAAAAACAACCCAGTG
1 GAAAATGAA-CTAGAAAGATGAACCTATCCTAAACACACACCCTTGGCATAAAAGTGACCCAATG
* *
9799 ATGACCTAAGACTCGATTTTAATGAAATTACTAAAATACCCCTAAAGTATACCTTTAG-CATAAA
65 AT-ACCTAAGACTCGATTTTAA-AAAATTACCAAAATACCCCTAAAGTATACC-TTAGACATAAA
9863 AG
127 AG
9865 TGCCTTGATA
Statistics
Matches: 220, Mismatches: 53, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
152 5 0.02
153 70 0.32
154 50 0.23
155 85 0.39
156 10 0.05
ACGTcount: A:0.44, C:0.21, G:0.12, T:0.23
Consensus pattern (152 bp):
GAAAATGAACTAGAAAGATGAACCTATCCTAAACACACACCCTTGGCATAAAAGTGACCCAATGA
TACCTAAGACTCGATTTTAAAAAATTACCAAAATACCCCTAAAGTATACCTTAGACATAAAAGCA
TCTCAATAACCCTAAAAGACAT
Found at i:11633 original size:155 final size:155
Alignment explanation
Indices: 11264--11617 Score: 380
Period size: 155 Copynumber: 2.3 Consensus size: 155
11254 AGATCTGCAG
* * * *
11264 AATACCCAT-AGGAGATACCTTCGACGTAAAAGCACCTGATACCTCT-AAAGAACTTAAAAAGGA
1 AATACCCCTAAGG-GATACCTTCGACGTAAAAGTACCTAATACCCCTAAAAG-ACTTAAAAAGGA
* * * *
11327 TTTTAAAAGGGATGAACATATCCTAAATATCCACCTTCGGCATAAAATCAGACCTAGTGACGACC
64 TTTTAAAAGGGATGAACATACCCTAAATATCCACCTTCAGCATAAAATCAGACCCAATGACGACC
* * * *
11392 TAGAAGTTGGTTTTGAAAAATTATAAA
129 TAGAACTCGATTTAGAAAAATTATAAA
* *
11419 AATGCCCCTAAGGGATACCTTCGATGTAAAAGTACCTAATACCCCTAAAAGACTTAAAAAGGATT
1 AATACCCCTAAGGGATACCTTCGACGTAAAAGTACCTAATACCCCTAAAAGACTTAAAAAGGATT
* * * * *
11484 TTAAATGGGATGAACCTACCCTAAATA-CGCACCTTCAGCATAAAAGTGA-ACCCAATGATGGCC
66 TTAAAAGGGATGAACATACCCTAAATATC-CACCTTCAGCATAAAA-TCAGACCCAATGACGACC
* *
11547 TA-AGACTCGATTCTAGTAAAATTA-CAA
129 TAGA-ACTCGATT-TAGAAAAATTATAAA
* * *
11574 AATACCCCTAGGGGATACCTTTGACGTCAAAGTATCC-AATACCC
1 AATACCCCTAAGGGATACCTTCGACGTAAAAGTA-CCTAATACCC
11618 TTAAGGTATT
Statistics
Matches: 166, Mismatches: 26, Indels: 14
0.81 0.13 0.07
Matches are distributed among these distances:
154 2 0.01
155 144 0.87
156 20 0.12
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (155 bp):
AATACCCCTAAGGGATACCTTCGACGTAAAAGTACCTAATACCCCTAAAAGACTTAAAAAGGATT
TTAAAAGGGATGAACATACCCTAAATATCCACCTTCAGCATAAAATCAGACCCAATGACGACCTA
GAACTCGATTTAGAAAAATTATAAA
Found at i:13179 original size:18 final size:17
Alignment explanation
Indices: 13156--13193 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
13146 AAAATCCTAC
13156 TTTTTTTC-CATTTTTTCT
1 TTTTTTTCTC-TTTTTT-T
13174 TTTTTTTCTCTTTTTTT
1 TTTTTTTCTCTTTTTTT
13191 TTT
1 TTT
13194 CTCCGAGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 14 0.74
19 1 0.05
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTTTCTCTTTTTTT
Found at i:13180 original size:11 final size:11
Alignment explanation
Indices: 13166--13195 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
13156 TTTTTTTCCA
13166 TTTTTTCTTTT
1 TTTTTTCTTTT
*
13177 TTTTCTCTTTT
1 TTTTTTCTTTT
13188 TTTTTTCT
1 TTTTTTCT
13196 CCGAGTTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:14117 original size:166 final size:167
Alignment explanation
Indices: 13762--14119 Score: 416
Period size: 166 Copynumber: 2.1 Consensus size: 167
13752 AATCCCCTTG
** **
13762 AAAATATTTATGGAATAGAAAACTCGGTTTTTTGAAAACAAGGAAATTTCAAAGAAAAAATTCAA
1 AAAATATTTATGGAATAGAAAACTCCATTTTCAGAAAACAAGGAAATTTCAAAGAAAAAATTCAA
* * ** * ** *
13827 AACTCATGGAAAATGAATGAATCTTTCCAAACTAATTTAATGTGGATTAAATGATAATATCTGAT
66 AAATAATGGAAAATGAATGAATCTTTAAAAACTAATTTAATATAAATTAAATAATAATATCTGAT
* * * **
13892 GAATTTTAAAAAATAAAAATCAAGAAAAATCCCCCCG
131 AAATTTTAAAAAATAAAAACCAAGAAAAATCACCCAA
* * * * * *
13929 AAAACATATATGGAGTAGAAAACTCCATATTTCAG-AAATAAGGGAATTTCAAGGAAAAAATT-A
1 AAAATATTTATGGAATAGAAAACTCCAT-TTTCAGAAAACAAGGAAATTTCAAAGAAAAAATTCA
* * * *
13992 AAAATGAAT-GAAAATGAATGAATTTTTAAAAATTGATTTAATATAAATTAAATAATAATATTTG
65 AAAAT-AATGGAAAATGAATGAATCTTTAAAAACTAATTTAATATAAATTAAATAATAATATCTG
*
14056 ATAAATTTTAAAAACTAAAAACCAAGAAAAATCACCCAA
129 ATAAATTTTAAAAAATAAAAACCAAGAAAAATCACCCAA
*
14095 AAAATATTTATGGAAAAGAAAACTC
1 AAAATATTTATGGAATAGAAAACTC
14120 TGTATTTTGA
Statistics
Matches: 157, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
166 104 0.66
167 49 0.31
168 4 0.03
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.28
Consensus pattern (167 bp):
AAAATATTTATGGAATAGAAAACTCCATTTTCAGAAAACAAGGAAATTTCAAAGAAAAAATTCAA
AAATAATGGAAAATGAATGAATCTTTAAAAACTAATTTAATATAAATTAAATAATAATATCTGAT
AAATTTTAAAAAATAAAAACCAAGAAAAATCACCCAA
Found at i:17790 original size:20 final size:20
Alignment explanation
Indices: 17737--17791 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
17727 AAAATTCCAG
**
17737 ATGTATCGATACAAAGATCA
1 ATGTATCGATACATTGATCA
17757 ATGTATCGATACATTGAAT-A
1 ATGTATCGATACATTG-ATCA
17777 ATGTATCGATACATT
1 ATGTATCGATACATT
17792 TTCTTAGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.94
21 2 0.06
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGATCA
Found at i:17875 original size:19 final size:19
Alignment explanation
Indices: 17815--17875 Score: 52
Period size: 19 Copynumber: 3.1 Consensus size: 19
17805 GAAGGGTAGC
*
17815 TTTGTATCGATACAACACT-
1 TTTGTATCGATACAA-ATTG
* * *
17834 TATGTATCAATACATTTATTG
1 TTTGTATCGATACA--AATTG
17855 TTTGTATCGATACAAATTG
1 TTTGTATCGATACAAATTG
17874 TT
1 TT
17876 GAAATTCAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
19 18 0.56
20 2 0.06
21 12 0.38
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.44
Consensus pattern (19 bp):
TTTGTATCGATACAAATTG
Found at i:18716 original size:49 final size:49
Alignment explanation
Indices: 18652--18927 Score: 354
Period size: 49 Copynumber: 5.6 Consensus size: 49
18642 ATGTTAAAGA
* *
18652 TGCCAATATGTTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGG
* ** * * *
18701 TGCCAATGTGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGG
* * * *
18750 TGCCAATATGCTGATTCAAGGCCAGCGATATGGGACTTAAAGATGAAGA
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGG
* ** *
18799 TGCCAATGTGCTGATTCAAGGCCGGCGACATTGGACTTAAAGATGGTTAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGAT-G--AAGG
* * *
18851 TGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCATAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGG
18900 TGCCAATATGCTGATTCAAGGCCAACGA
1 TGCCAATATGCTGATTCAAGGCCAACGA
18928 TATTGGGCTT
Statistics
Matches: 198, Mismatches: 26, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
49 154 0.78
50 1 0.01
51 1 0.01
52 42 0.21
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGG
Found at i:18863 original size:150 final size:147
Alignment explanation
Indices: 18648--18930 Score: 431
Period size: 150 Copynumber: 1.9 Consensus size: 147
18638 AGGAATGTTA
* *
18648 AAGATGCCAATATGTTGATTCAAGGCCAACGATATCGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGCCAATGTGCT
** * * *
18713 GATTCAAGGCCAGTGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
66 GATTCAAGGCCAACGACATCGGTCATAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGA
18778 TATGGGACTTAAAGATG
131 TATGGGACTTAAAGATG
* ** *
18795 AAGATGCCAATGTGCTGATTCAAGGCCGGCGACATTGGACTTAAAGATGGTTAAGGTGCCAATGT
1 AAGATGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGAT-G--AAGGTGCCAATGT
*
18860 GCTGATTCAAGGCCAACGACATCGGTCATAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAA
63 GCTGATTCAAGGCCAACGACATCGGTCATAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAA
18925 CGATAT
128 CGATAT
18931 TGGGCTTGTG
Statistics
Matches: 121, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
147 42 0.35
148 1 0.01
150 78 0.64
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.24
Consensus pattern (147 bp):
AAGATGCCAATATGCTGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGGTGCCAATGTGCT
GATTCAAGGCCAACGACATCGGTCATAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGA
TATGGGACTTAAAGATG
Found at i:18868 original size:199 final size:197
Alignment explanation
Indices: 18556--18923 Score: 497
Period size: 199 Copynumber: 1.9 Consensus size: 197
18546 CGAAGAATGA
* * * *
18556 CAATGTGCTGATTCATGGCCAGCGACATTAGACTTCAAGAAGAATGCCAATGTGCTGAGACAAGG
1 CAATATGCTGATTCAAGGCCAGCGACATGAGACTTAAAGAAGAATGCCAATGTGCTGAGACAAGG
* * * * * *
18621 CTAGTGACATTGGGCTTAGGAATGTTAAAGATGCCAATATGTTGATTCAAGGCCAACGATATCGG
66 CCAGCGACATTGGACTTAAGAATGTTAAAGATGCCAATATGCTGATTCAAGGCCAACGACATCGG
* *
18686 ACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGATAAAGGT
131 ACATAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGATAAAGGT
18751 GC
196 GC
* * * **
18753 CAATATGCTGATTCAAGGCCAGCGATATGGGACTTAAAGATGAAGATGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAGCGACATGAGACTTAAAGAAG-A-ATGCCAATGTGCTGAGACAA
* * *
18818 GGCCGGCGACATTGGACTTAA-AGATGGTT-AAGGTGCCAATGTGCTGATTCAAGGCCAACGACA
64 GGCCAGCGACATTGGACTTAAGA-AT-GTTAAAGATGCCAATATGCTGATTCAAGGCCAACGACA
*
18881 TCGGTCATAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCA
127 TCGGACATAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCA
18924 ACGATATTGG
Statistics
Matches: 146, Mismatches: 21, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
197 35 0.24
198 2 0.01
199 106 0.73
200 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.24
Consensus pattern (197 bp):
CAATATGCTGATTCAAGGCCAGCGACATGAGACTTAAAGAAGAATGCCAATGTGCTGAGACAAGG
CCAGCGACATTGGACTTAAGAATGTTAAAGATGCCAATATGCTGATTCAAGGCCAACGACATCGG
ACATAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGATAAAGGT
GC
Found at i:18954 original size:39 final size:39
Alignment explanation
Indices: 18899--19392 Score: 240
Period size: 39 Copynumber: 11.6 Consensus size: 39
18889 AAAGATGAAG
*
18899 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGGCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * ** * * *
18938 GTGCCAATGTGTTGATTGAAGGCTGGCAACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
*
18977 AAAGGCAAGGTGCCAATATGCTGATTCACGGCCAGCGATATTGGGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * *
19025 GTGCCAATATGCTGATTTAAGGCCAGCGACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
*
19064 AAAACAAGGTGCCGATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 --------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
19111 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
*
19150 AAAGGCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * *
19198 GT----ATGTGCTGATTCAAGGCCAGCGACATTGGCCTT
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
19233 AAAGGCACGGTGCCAATATGCTGATTCAAGGCTAGTGGTATTGAGCTT
1 ---------GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * * **
19281 GTGCCAATGTGCTGATTCAAAGCTAGCGACATTGGTTTTAAAGACAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGG-------G-CTT
*
19328 GATGCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTT
1 G-TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * *
19368 ATGCCAATGTGCTGATTCAGGGCCA
1 GTGCCAATATGCTGATTCAAGGCCA
19393 ACAGCATTGT
Statistics
Matches: 341, Mismatches: 66, Indels: 96
0.68 0.13 0.19
Matches are distributed among these distances:
35 29 0.09
39 151 0.44
40 1 0.00
41 1 0.00
44 2 0.01
46 1 0.00
47 37 0.11
48 119 0.35
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (39 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
Found at i:19010 original size:87 final size:87
Alignment explanation
Indices: 18850--19724 Score: 805
Period size: 87 Copynumber: 10.0 Consensus size: 87
18840 GATGGTTAAG
* * * *
18850 GTGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCATAAAGATGAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGAT
*
18915 TCAAGGCCAACGATATTGGGCTT
65 TCAAGGCCAGCGATATTGGGCTT
* * ** * *
18938 GTGCCAATGTGTTGATTGAAGGCTGGCAACATTGGTCTTAAAGGCAAGGTGCCAATATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
19003 CACGGCCAGCGATATTGGGCTT
66 CAAGGCCAGCGATATTGGGCTT
* * *
19025 GTGCCAATATGCTGATTTAAGGCCAGCGACATTGGTCTTAAA-ACAAGGTGCCGATATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
19089 CAAGGCCAGCGATATTGGGCTT
66 CAAGGCCAGCGATATTGGGCTT
* *
19111 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGGCAAGGTGCCAATATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
*
19176 CAAGGCCAGCGATATTAGGCTT
66 CAAGGCCAGCGATATTGGGCTT
* * *
19198 GT----ATGTGCTGATTCAAGGCCAGCGACATTGGCCTTAAAGGCACGGTGCCAATATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
* * * *
19259 CAAGGCTAGTGGTATTGAGCTT
66 CAAGGCCAGCGATATTGGGCTT
* * * * *
19281 GTGCCAATGTGCTGATTCAAAGCTAGCGACATTGGTTTTAAAGACAAGATGCCAATATGTTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
19346 CAAGGCCAGCGATATTGGGCTT
66 CAAGGCCAGCGATATTGGGCTT
* * * * *
19368 ATGCCAATGTGCTGATTCAGGGCCAAC-AGCATT-GTCTTAGAGACAAAGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGA-CATTGGTCTTAAAGACAAGGTGCCAATATGCTGAT
* * *
19431 TCAAGGACTA-TGATATTGGACTCAAGAT
65 TCAAGG-CCAGCGATATTGGGCT-----T
* * * * ** * *
19459 GGAGATGCCAATGTGCTGATTCAAGGTCGGTGACATTGGACTTAAACATGGTTAATGTGCCAATG
1 ---G-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A--GACAAGGTGCCAATA
** * * *
19524 TGCTGATTCAAGGCCAATGACATCGGTCTTAAAGAT
58 TGCTGATTCAAGGCCAGCGATATTGGGC-T-----T
* * * * * *
19560 GAAGGTGCCAATATGTTTATTCAAGGCCAGGGATATTGGGCTT---------GTGCCAATATGCT
1 ----GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCT
*
19616 GATTCAAGGCCAGTGATATTGGGCTT
62 GATTCAAGGCCAGCGATATTGGGCTT
* * * * *
19642 TTGCCAATGTGTTGATTCAAGGCTAGC-AGCATTGGTCTTAAAGACAAGGTGCTAACATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGA-CATTGGTCTTAAAGACAAGGTGCCAATATGCTGAT
*
19706 TCAAGGCCAACGATATTGG
65 TCAAGGCCAGCGATATTGG
19725 ACTCAAGATG
Statistics
Matches: 648, Mismatches: 104, Indels: 71
0.79 0.13 0.09
Matches are distributed among these distances:
77 1 0.00
78 30 0.05
82 1 0.00
83 76 0.12
86 122 0.19
87 247 0.38
88 67 0.10
91 1 0.00
95 25 0.04
96 5 0.01
97 1 0.00
98 1 0.00
99 2 0.00
100 32 0.05
101 36 0.06
102 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (87 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATATTGGGCTT
Found at i:19094 original size:47 final size:46
Alignment explanation
Indices: 19025--19825 Score: 308
Period size: 48 Copynumber: 17.9 Consensus size: 46
19015 TATTGGGCTT
*
19025 GTGCCAATATGCTGATTTAAGGCCAGCGACATTGGTCTTAAAACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTT-AAACAAG
* * *
19072 GTGCCGATATGCTGATTCAAGGCCAGCGATATTGGGCTT-----A-
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAACAAG
*
19112 -TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGGCAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAA--CAAG
*
19159 GTGCCAATATGCTGATTCAAGGCCAGCGATATTAGG-CTT-------
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATT-GGTCTTAAACAAG
* * *
19198 GT----ATGTGCTGATTCAAGGCCAGCGACATTGGCCTTAAAGGCACG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAA--CAAG
* * **
19242 GTGCCAATATGCTGATTCAAGGCTAGTGGTATTGAG-CTT-------
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTG-GTCTTAAACAAG
* * * *
19281 GTGCCAATGTGCTGATTCAAAGCTAGCGACATTGGTTTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-ACAAG
* * * *
19329 ATGCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTT-----A-
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAACAAG
* * * *
19369 -TGCCAATGTGCTGATTCAGGGCCAAC-AGCATT-GTCTTAGAGACAAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGA-CATTGGTCTTA-A-ACAAG
* * * * * **
19415 GTGCCAATATGCTGATTCAAGGACTA-TGATATTGGACTCAAGATGGAG
1 GTGCCAATATGCTGATTCAAGG-CCAGCGACATTGGTCTTAA-A-CAAG
* * * * * * *
19463 ATGCCAATGTGCTGATTCAAGGTCGGTGACATTGGACTTAAACATGGTTAAT
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAC------AAG
* ** * *
19515 GTGCCAATGTGCTGATTCAAGGCCAATGACATCGGTCTTAAAGATGAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-CAAG
* * * * *
19564 GTGCCAATATGTTTATTCAAGGCCAGGGATATTGGGCTT-------
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAACAAG
* * *
19603 GTGCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTT-------
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAACAAG
* * * *
19642 TTGCCAATGTGTTGATTCAAGGCTAGC-AGCATTGGTCTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGA-CATTGGTCTT-AA-ACAAG
* * * * * * *
19690 GTGCTAACATGCTGATTCAAGGCCAACGATATTGGACTCAAGATGGTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAA-A----CAAG
* * * * *
19741 GTGCCAATATGCTTATTCAAGGCTAGCAATATTGGACTT--A-AAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAACAAG
*
19784 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAA
19826 GATAAAGGTG
Statistics
Matches: 571, Mismatches: 107, Indels: 154
0.69 0.13 0.19
Matches are distributed among these distances:
34 2 0.00
35 28 0.05
38 7 0.01
39 158 0.28
41 2 0.00
43 36 0.06
44 2 0.00
45 2 0.00
46 1 0.00
47 65 0.11
48 159 0.28
49 37 0.06
51 35 0.06
52 34 0.06
53 2 0.00
54 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (46 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAACAAG
Found at i:19145 original size:173 final size:174
Alignment explanation
Indices: 18850--19724 Score: 816
Period size: 173 Copynumber: 5.0 Consensus size: 174
18840 GATGGTTAAG
* * *
18850 GTGCCAATGTGCTGATTCAAGGCCAACGACATCGGTCATAAAGATGAAGGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCTGAT
* * * * *
18915 TCAAGGCCAACGATATTGGGCTTGTGCCAATGTGTTGATTGAAGGCTGGCAACATTGGTCTTAAA
65 TCAAGGCCAGCGATATTGGGCTTGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAA
*
18980 GGCAAGGTGCCAATATGCTGATTCACGGCCAGCGATATTGGGCTT
130 GGCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
19025 GTGCCAATATGCTGATTTAAGGCCAGCGACATTGGTCTTAAA-ACAAGGTGCCGATATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
* *
19089 CAAGGCCAGCGATATTGGGCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
66 CAAGGCCAGCGATATTGGGCTTGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAG
*
19154 GCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTT
131 GCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
19198 GT----ATGTGCTGATTCAAGGCCAGCGACATTGGCCTTAAAGGCACGGTGCCAATATGCTGATT
1 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
* * * * * *
19259 CAAGGCTAGTGGTATTGAGCTTGTGCCAATGTGCTGATTCAAAGCTAGCGACATTGGTTTTAAAG
66 CAAGGCCAGCGATATTGGGCTTGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAG
* * *
19324 ACAAGATGCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTT
131 GCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
* * * *
19368 ATGCCAATGTGCTGATTCAGGGCCAAC-AGCATT-GTCTTAGAGACAAAGTGCCAATATGCTGAT
1 GTGCCAATGTGCTGATTCAAGGCCAACGA-CATTGGTCTTAAAGACAAGGTGCCAATATGCTGAT
* * * * *
19431 TCAAGGACTA-TGATATTGGACTCAAGATGGAGATGCCAATGTGCTGATTCAAGG-TCGGTGACA
65 TCAAGG-CCAGCGATATTGGGCT-----T---G-TGCCAATGTGCTGATTCAAGGCT-AGCGACA
* * * * ** * * *
19494 TTGGACTTAAACATGGTTAATGTGCCAATGTGCTGATTCAAGGCCAATGACATCGGTCTTAAAGA
119 TTGGTCTT-AA-A-GG-CAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----
19559 T
174 T
* * * ** * *
19560 GAAGGTGCCAATATGTTTATTCAAGGCCAGGGATATTGGGCTT---------GTGCCAATATGCT
1 ----GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCT
* * *
19616 GATTCAAGGCCAGTGATATTGGGCTTTTGCCAATGTGTTGATTCAAGGCTAGC-AGCATTGGTCT
62 GATTCAAGGCCAGCGATATTGGGCTTGTGCCAATGTGCTGATTCAAGGCTAGCGA-CATTGGTCT
* * * *
19680 TAAAGACAAGGTGCTAACATGCTGATTCAAGGCCAACGATATTGG
126 TAAAGGCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
19725 ACTCAAGATG
Statistics
Matches: 578, Mismatches: 86, Indels: 72
0.79 0.12 0.10
Matches are distributed among these distances:
169 33 0.06
170 117 0.20
173 162 0.28
174 27 0.05
175 68 0.12
176 1 0.00
177 1 0.00
178 4 0.01
179 30 0.05
180 1 0.00
181 2 0.00
182 31 0.05
183 3 0.01
184 1 0.00
185 1 0.00
186 31 0.05
187 3 0.01
188 33 0.06
192 1 0.00
196 23 0.04
197 5 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (174 bp):
GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGGTGCCAATATGCTGATT
CAAGGCCAGCGATATTGGGCTTGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAG
GCAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
Found at i:19497 original size:48 final size:50
Alignment explanation
Indices: 19413--19556 Score: 141
Period size: 52 Copynumber: 2.9 Consensus size: 50
19403 CTTAGAGACA
* * * * *
19413 AAGTGCCAATATGCTGATTCAAGGACTATGATATTGGAC-TCAAGATGG-
1 AAGTGCCAATGTGCTGATTCAAGGACGATGACATTGGACTTAAACATGGT
* *
19461 -AGATGCCAATGTGCTGATTCAAGGTCGGTGACATTGGACTTAAACATGGTT
1 AAG-TGCCAATGTGCTGATTCAAGGACGATGACATTGGACTTAAACATGG-T
* * * *
19512 AATGTGCCAATGTGCTGATTCAAGGCCAATGACATCGGTCTTAAA
1 AA-GTGCCAATGTGCTGATTCAAGGACGATGACATTGGACTTAAA
19557 GATGAAGGTG
Statistics
Matches: 78, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
47 2 0.03
48 31 0.40
49 7 0.09
52 37 0.47
53 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.28
Consensus pattern (50 bp):
AAGTGCCAATGTGCTGATTCAAGGACGATGACATTGGACTTAAACATGGT
Found at i:19545 original size:52 final size:48
Alignment explanation
Indices: 19414--19585 Score: 139
Period size: 52 Copynumber: 3.5 Consensus size: 48
19404 TTAGAGACAA
* * * * *
19414 AGTGCCAATATGCTGATTCAAGGACTATGATATTGGAC-TCAAGATGG
1 AGTGCCAATGTGCTGATTCAAGGACAATGACATTGGACTTAAACATGG
* **
19461 AGATGCCAATGTGCTGATTCAAGGTCGGTGACATTGGACTTAAACATGG
1 AG-TGCCAATGTGCTGATTCAAGGACAATGACATTGGACTTAAACATGG
* * * * *
19510 TTAATGTGCCAATGTGCTGATTCAAGGCCAATGACATCGGTCTTAAAGATGA
1 ---A-GTGCCAATGTGCTGATTCAAGGACAATGACATTGGACTTAAACATGG
* * *
19562 AGGTGCCAATATGTTTATTCAAGG
1 A-GTGCCAATGTGCTGATTCAAGG
19586 CCAGGGATAT
Statistics
Matches: 101, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
47 2 0.02
48 31 0.31
49 27 0.27
52 40 0.40
53 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (48 bp):
AGTGCCAATGTGCTGATTCAAGGACAATGACATTGGACTTAAACATGG
Found at i:19621 original size:39 final size:39
Alignment explanation
Indices: 19564--19664 Score: 157
Period size: 39 Copynumber: 2.6 Consensus size: 39
19554 AAAGATGAAG
*
19564 GTGCCAATATGTTTATTCAAGGCCAGGGATATTGGGCTT
1 GTGCCAATATGTTGATTCAAGGCCAGGGATATTGGGCTT
* *
19603 GTGCCAATATGCTGATTCAAGGCCAGTGATATTGGGCTT
1 GTGCCAATATGTTGATTCAAGGCCAGGGATATTGGGCTT
* *
19642 TTGCCAATGTGTTGATTCAAGGC
1 GTGCCAATATGTTGATTCAAGGC
19665 TAGCAGCATT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.33
Consensus pattern (39 bp):
GTGCCAATATGTTGATTCAAGGCCAGGGATATTGGGCTT
Found at i:19802 original size:43 final size:43
Alignment explanation
Indices: 19736--19826 Score: 128
Period size: 43 Copynumber: 2.1 Consensus size: 43
19726 CTCAAGATGG
* * *
19736 TAAAGGTGCCAATATGCTTATTCAAGGCTAGCAATATTGGACT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACT
* * *
19779 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCT
1 TAAAGGTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACT
19822 TAAAG
1 TAAAG
19827 ATAAAGGTGC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
TAAAGGTGCCAATATGCTGATTCAAGGCCAGCAACATTGGACT
Found at i:19877 original size:33 final size:33
Alignment explanation
Indices: 19829--20019 Score: 187
Period size: 33 Copynumber: 5.9 Consensus size: 33
19819 TCTTAAAGAT
* * *
19829 AAAGGTGCCATGGAGTTGTAGACTTAAATGAAA
1 AAAGGTGCCATGGAGTTGTGGACTTAAAAGGAA
* *
19862 AAAGATGCCACGGAGTTGTGGACTTAAAA-G--
1 AAAGGTGCCATGGAGTTGTGGACTTAAAAGGAA
* *
19892 ---GGTGCTATTGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCATGGAGTTGTGGACTTAAAAGGAA
*
19922 CAAGGTGCCATGGAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCATGGAGTTGTGGACTTAAAAGGAA
* * * *
19955 AAAGATGCCACGGAGTTGTGGGCATTAAAAAGAA
1 AAAGGTGCCATGGAGTTGTGGAC-TTAAAAGGAA
*** *
19989 AAAGGTGCCACAAAATTGTGGACTTAAAAGG
1 AAAGGTGCCATGGAGTTGTGGACTTAAAAGG
20020 GTGCAACAGA
Statistics
Matches: 129, Mismatches: 22, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
27 22 0.17
28 1 0.01
33 79 0.61
34 27 0.21
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (33 bp):
AAAGGTGCCATGGAGTTGTGGACTTAAAAGGAA
Found at i:19931 original size:60 final size:60
Alignment explanation
Indices: 19832--20023 Score: 170
Period size: 60 Copynumber: 3.1 Consensus size: 60
19822 TAAAGATAAA
*
19832 GGTGCCATGGAGTTGTAGACTTAAATGAAAAAAGATGCCACGGAGTTGTGGACTTAAAAG
1 GGTGCCATGGAGTTGTAGACTTAAAAGAAAAAAGATGCCACGGAGTTGTGGACTTAAAAG
* * * * * * *
19892 GGTGCTATTGAGTTGTGGACTTAAAAGGAACAAGGTGCCATGGAGTTGTGGACTTAAAAG
1 GGTGCCATGGAGTTGTAGACTTAAAAGAAAAAAGATGCCACGGAGTTGTGGACTTAAAAG
* * * * ** *
19952 GAAAAAGATGCCACGGAGTTGTGGGCATTAAAA-AGAAAAAGGTGCCACAAAATTGTGGACTTAA
1 G-----G-TGCCATGGAGTTGTAGAC-TTAAAAGA-AAAAAGATGCCACGGAGTTGTGGACTTAA
20016 AAG
58 AAG
20019 GGTGC
1 GGTGC
20024 AACAGAGTTA
Statistics
Matches: 106, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
60 53 0.50
61 3 0.03
62 1 0.01
65 1 0.01
66 14 0.13
67 34 0.32
ACGTcount: A:0.35, C:0.11, G:0.31, T:0.22
Consensus pattern (60 bp):
GGTGCCATGGAGTTGTAGACTTAAAAGAAAAAAGATGCCACGGAGTTGTGGACTTAAAAG
Found at i:20129 original size:31 final size:31
Alignment explanation
Indices: 20091--20628 Score: 567
Period size: 31 Copynumber: 17.4 Consensus size: 31
20081 AAAGATTGCA
*
20091 TGGACTTTGAAGAAAAGATGCCACTGAGTTG
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
* **
20122 TGGACTTTG-GGAAGGGATGCCACTGAGTCG
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
*
20152 TGGACTTTGAAGAAAAAAGATGCCACTGAGTCA
1 TGGACTTTGAAG--AAAAGATGCCACTGAGTCG
*
20185 TGGACTTGGAAGAAAAGGATGCCACTGAGTCG
1 TGGACTTTGAAGAAAA-GATGCCACTGAGTCG
* * *
20217 TGGACTTAGAA-AAGAGATGCCACTGAGTTG
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
*
20247 TGGACTTTGAAGAAAAGATGCCACTGAATCG
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
* * *
20278 TGGACTTTG-GGACAAGATGCCACTAAGTCG
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
* * *
20308 GGGACTTTG-AGAAGAA-ATTTCCACTGAGTCA
1 TGGACTTTGAAGAA-AAGA-TGCCACTGAGTCG
*
20339 TGGACTTTGAAGAAAAGATGCCACTGAGTTG
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
*
20370 TGGACTTTGAAGAAAAGATGCCATTGAGTCG
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
* * * *
20401 TAGACTTTGGGAGAAAAGGATGCCACTAATTCG
1 TGGACTTT-GAAGAAAA-GATGCCACTGAGTCG
* * *
20434 TGGACTTAGAA-AAGAGATGCCACTGAGTTG
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
* * *
20464 TGGAATTTGAAGAAAATATGCCACTGAGTCA
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
*
20495 TGGAC-TTGAAAGAAAAGGATGCCACCGAGTCG
1 TGGACTTTG-AAGAAAA-GATGCCACTGAGTCG
* * *
20527 TGGACTTAGAA-AAGAGATGCCACTGAGTTG
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
* *
20557 TGGACTTTGAAGAAAAAATGCCACTGAGTCA
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
* * *
20588 TTGACTTTG-AGAAGAGAT--CACTGAGTCA
1 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
*
20616 TGGGCTTTTGAAG
1 TGGAC-TTTGAAG
20629 GTTGCCACTG
Statistics
Matches: 420, Mismatches: 69, Indels: 37
0.80 0.13 0.07
Matches are distributed among these distances:
28 13 0.03
29 4 0.01
30 134 0.32
31 165 0.39
32 57 0.14
33 47 0.11
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.24
Consensus pattern (31 bp):
TGGACTTTGAAGAAAAGATGCCACTGAGTCG
Found at i:20270 original size:156 final size:155
Alignment explanation
Indices: 20091--20628 Score: 685
Period size: 156 Copynumber: 3.5 Consensus size: 155
20081 AAAGATTGCA
* * * *
20091 TGGACTTTGAAGAAAAGATGCCACTGAGTTGTGGACTTTGGGAAGGGATGCCACTGAGTCGTGGA
1 TGGACTTTGAAGAAAAGATGCCACTGAATCGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGA
20156 CTTTGAAGAAAAAAGATGCCACTGAGTCATGGACTTGGAAGAAAAGGATGCCACTGAGTCGTGGA
66 CTTTGAAGAAAAAA-ATGCCACTGAGTCATGGACTTGGAAGAAAAGGATGCCACTGAGTCGTGGA
20221 CTTAGAAAAGAGATGCCACTGAGTTG
130 CTTAGAAAAGAGATGCCACTGAGTTG
* * *
20247 TGGACTTTGAAGAAAAGATGCCACTGAATCGTGGACTTTGGGACA-AGATGCCACTAAGTCGGGG
1 TGGACTTTGAAGAAAAGATGCCACTGAATCGTGGACTTTGAGA-AGAGATGCCACTGAGTCGTGG
* * * * *
20311 ACTTTG-AGAAGAAATTTCCACTGAGTCATGGACTTTGAAGAAAA-GATGCCACTGAGTTGTGGA
65 ACTTTGAAGAAAAAAATGCCACTGAGTCATGGACTTGGAAGAAAAGGATGCCACTGAGTCGTGGA
* * * *
20374 CTTTGAAGAAAAGATGCCATTGAGTCG
130 CTTAGAA-AAGAGATGCCACTGAGTTG
* * * * *
20401 TAGACTTTGGGAGAAAAGGATGCCACT-AATTCGTGGACTTAGAAAAGAGATGCCACTGAGTTGT
1 TGGACTTT-GAAGAAAA-GATGCCACTGAA-TCGTGGACTTTGAGAAGAGATGCCACTGAGTCGT
* * * *
20465 GGAATTTGAAG-AAAATATGCCACTGAGTCATGGACTTGAAAGAAAAGGATGCCACCGAGTCGTG
63 GGACTTTGAAGAAAAAAATGCCACTGAGTCATGGACTTGGAAGAAAAGGATGCCACTGAGTCGTG
20529 GACTTAGAAAAGAGATGCCACTGAGTTG
128 GACTTAGAAAAGAGATGCCACTGAGTTG
* * * * * *
20557 TGGACTTTGAAGAAAAAATGCCACTGAGTCATTGACTTTGAGAAGAGAT--CACTGAGTCATGGG
1 TGGACTTTGAAGAAAAGATGCCACTGAATCGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGA
20620 CTTTTGAAG
66 C-TTTGAAG
20629 GTTGCCACTG
Statistics
Matches: 325, Mismatches: 47, Indels: 23
0.82 0.12 0.06
Matches are distributed among these distances:
152 11 0.03
153 31 0.10
154 75 0.23
155 25 0.08
156 157 0.48
157 26 0.08
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.24
Consensus pattern (155 bp):
TGGACTTTGAAGAAAAGATGCCACTGAATCGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGA
CTTTGAAGAAAAAAATGCCACTGAGTCATGGACTTGGAAGAAAAGGATGCCACTGAGTCGTGGAC
TTAGAAAAGAGATGCCACTGAGTTG
Found at i:20345 original size:217 final size:217
Alignment explanation
Indices: 20111--20616 Score: 639
Period size: 217 Copynumber: 2.3 Consensus size: 217
20101 AGAAAAGATG
** * **
20111 CCACTGAGTTGTGGACTTTG-GGAAGGGATGCCACTGAGTCGTGGACTTTGAAGAAAAAAGATGC
1 CCACTGAGTCATGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAG--AAAAGATGC
* *
20175 CACTGAGTCATGGAC-TTGGAAGAAAAGGATGCCACTGAGTCGTGGACTTAGAAAAGAGATGCCA
64 CACTGAGTCATAGACTTTGGAAGAAAAGGATGCCACTAAGTCGTGGACTTAGAAAAGAGATGCCA
* *
20239 CTGAGTTGTGGACTTTGAAGAAAAGATGCCACTGAATCGTGGACTTTGGGACAAGATGCCACTAA
129 CTGAGTTGTGGAATTTGAAGAAAAGATGCCACTGAATCATGGACTTTGGGACAAGATGCCACTAA
20304 GTCGGGGACTTTGAGAAGAAATTT
194 GTCGGGGACTTTGAGAAGAAATTT
*
20328 CCACTGAGTCATGGACTTTGAAGAAAAGATGCCACTGAGTTGTGGACTTTGAAGAAAAGATGCCA
1 CCACTGAGTCATGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCA
* * * *
20393 TTGAGTCGTAGACTTTGGGAGAAAAGGATGCCACTAATTCGTGGACTTAGAAAAGAGATGCCACT
66 CTGAGTCATAGACTTTGGAAGAAAAGGATGCCACTAAGTCGTGGACTTAGAAAAGAGATGCCACT
* * * * **
20458 GAGTTGTGGAATTTGAAGAAAATATGCCACTGAGTCATGGAC-TTGAAAGAAAAGGATGCCACCG
131 GAGTTGTGGAATTTGAAGAAAAGATGCCACTGAATCATGGACTTTG--GGACAA-GATGCCACTA
* * * * *
20522 AGTCGTGGACTTAGAAAAGAGA-TG
193 AGTCGGGGACTTTGAGAAGAAATTT
** * * * *
20546 CCACTGAGTTGTGGACTTTGAAGAAAAAATGCCACTGAGTCATTGACTTTG-AGAAGAGAT--CA
1 CCACTGAGTCATGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCA
20608 CTGAGTCAT
66 CTGAGTCAT
20617 GGGCTTTTGA
Statistics
Matches: 250, Mismatches: 34, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
215 9 0.04
216 24 0.10
217 112 0.45
218 79 0.32
219 26 0.10
ACGTcount: A:0.33, C:0.15, G:0.28, T:0.24
Consensus pattern (217 bp):
CCACTGAGTCATGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCA
CTGAGTCATAGACTTTGGAAGAAAAGGATGCCACTAAGTCGTGGACTTAGAAAAGAGATGCCACT
GAGTTGTGGAATTTGAAGAAAAGATGCCACTGAATCATGGACTTTGGGACAAGATGCCACTAAGT
CGGGGACTTTGAGAAGAAATTT
Found at i:21088 original size:37 final size:37
Alignment explanation
Indices: 21047--21128 Score: 164
Period size: 37 Copynumber: 2.2 Consensus size: 37
21037 GATGAAGCAG
21047 AAATGCATCATGCAAAATGAAATGTTATGAATGTCAC
1 AAATGCATCATGCAAAATGAAATGTTATGAATGTCAC
21084 AAATGCATCATGCAAAATGAAATGTTATGAATGTCAC
1 AAATGCATCATGCAAAATGAAATGTTATGAATGTCAC
21121 AAATGCAT
1 AAATGCAT
21129 GATTATGATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (37 bp):
AAATGCATCATGCAAAATGAAATGTTATGAATGTCAC
Found at i:22173 original size:20 final size:21
Alignment explanation
Indices: 22148--22200 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
22138 ATCGATATAT
*
22148 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
22168 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
22189 TGTATCGATACA
1 TGTATCGATACA
22201 GGTCATTTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:22279 original size:13 final size:13
Alignment explanation
Indices: 22261--22288 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
22251 ACACACAAGA
22261 TGTATCGATACAT
1 TGTATCGATACAT
22274 TGTATCGATACAT
1 TGTATCGATACAT
22287 TG
1 TG
22289 GCTTGTAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:28216 original size:13 final size:13
Alignment explanation
Indices: 28194--28232 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
28184 CAGCATTCTC
*
28194 TGTATCGATACAT
1 TGTATCGATACAA
*
28207 TGTATTGATACAA
1 TGTATCGATACAA
*
28220 TGTATCAATACAA
1 TGTATCGATACAA
28233 AGGGTTTATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:28398 original size:20 final size:20
Alignment explanation
Indices: 28363--28404 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
28353 CAAATTTCTT
28363 ATTTTTCACTTCAAAATACATC
1 ATTTTTCAC-TCAAAAT-CATC
28385 ATTTTTCA-TCAAAATCATC
1 ATTTTTCACTCAAAATCATC
28404 A
1 A
28405 ACAAAAACAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
22 8 0.40
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTTTTCACTCAAAATCATC
Found at i:29018 original size:32 final size:32
Alignment explanation
Indices: 28972--29042 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
28962 AGGTACTGGT
28972 TCACCTTCCAACACTTGAGATATTTAGTTGGA
1 TCACCTTCCAACACTTGAGATATTTAGTTGGA
*
29004 TCACCTTCCGACACTTGAGATATTTAGTTGGA
1 TCACCTTCCAACACTTGAGATATTTAGTTGGA
29036 TCACCTT
1 TCACCTT
29043 ACTAAGCGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.35
Consensus pattern (32 bp):
TCACCTTCCAACACTTGAGATATTTAGTTGGA
Found at i:30154 original size:21 final size:22
Alignment explanation
Indices: 30114--30158 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
30104 CGAAATTGTT
30114 AAATTATTTTATTAAGGGGGAG
1 AAATTATTTTATTAAGGGGGAG
30136 AAATT-TTTTGATTAAGGGGGAG
1 AAATTATTTT-ATTAAGGGGGAG
30158 A
1 A
30159 GAAAAGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.36, C:0.00, G:0.29, T:0.36
Consensus pattern (22 bp):
AAATTATTTTATTAAGGGGGAG
Found at i:30735 original size:196 final size:195
Alignment explanation
Indices: 30401--30793 Score: 671
Period size: 196 Copynumber: 2.0 Consensus size: 195
30391 AAAGGGGGAG
*
30401 ATTGTTAGGATATTGGTTTTGATATAACAAAGGATTGAATAAAACCGGAAATTAATTTGAAAATA
1 ATTGTTAGGATATTGGTTTTGATATAACAAAGGATTGAATAAAACCGAAAATTAATTTGAAAATA
* *
30466 CCAAAAATGTGTTTTATTCAATTAAGTACTTTATAAATTTTGTGCTAAATGATTTTTAACTCACC
66 CCAAAAATGTGTTTTATTCAATTAAGTACTTTATAAATTTTGTACCAAATGATTTTTAACTCACC
* * *
30531 AAATGTTTTCTAGATAAGTATAAATGTTTTCAAGGCTTAAAATGAGTG-TTTTTCGAGTTAAAAT
131 AAATGTTTTCTAGATAAGTATAAATGTTTTCAAGACAT-AAATGAGTGATTTTT-AAGTTAAAAT
30595 AT
194 AT
*
30597 ATTGTTAGGATATTGGTTTTGATATAACAAAGGATTGAATAAAACCGAAAATTATTTTGAAAATA
1 ATTGTTAGGATATTGGTTTTGATATAACAAAGGATTGAATAAAACCGAAAATTAATTTGAAAATA
*
30662 CCAAAAATGTGTTTTATTCAATTAAGTACTTTATAAATTTTGTACCAAATGATTTTTGACTCACC
66 CCAAAAATGTGTTTTATTCAATTAAGTACTTTATAAATTTTGTACCAAATGATTTTTAACTCACC
* *
30727 AAATGTTTTCTAGTTAAGTATAAATGTTTTCAAGACATAAATGATTGATTTTTAAGTTAAAATAT
131 AAATGTTTTCTAGATAAGTATAAATGTTTTCAAGACATAAATGAGTGATTTTTAAGTTAAAATAT
30792 AT
1 AT
30794 CAAAGTATCG
Statistics
Matches: 186, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
195 21 0.11
196 165 0.89
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (195 bp):
ATTGTTAGGATATTGGTTTTGATATAACAAAGGATTGAATAAAACCGAAAATTAATTTGAAAATA
CCAAAAATGTGTTTTATTCAATTAAGTACTTTATAAATTTTGTACCAAATGATTTTTAACTCACC
AAATGTTTTCTAGATAAGTATAAATGTTTTCAAGACATAAATGAGTGATTTTTAAGTTAAAATAT
Found at i:31009 original size:13 final size:13
Alignment explanation
Indices: 30991--31016 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
30981 TACACCAAGT
30991 ATGTATCGATACA
1 ATGTATCGATACA
31004 ATGTATCGATACA
1 ATGTATCGATACA
31017 TCAGAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:32662 original size:12 final size:12
Alignment explanation
Indices: 32628--32663 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
32618 TCAACCATCA
*
32628 ATGATGAAGAAG
1 ATGATGAAGATG
32640 ATGATGAAGATG
1 ATGATGAAGATG
*
32652 TTGATGAAGATG
1 ATGATGAAGATG
32664 GTGACTCGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (12 bp):
ATGATGAAGATG
Found at i:37386 original size:21 final size:22
Alignment explanation
Indices: 37339--37392 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
37329 AAATCTTTTA
37339 CAAAA-TACTT-GTTTTTCACTT
1 CAAAATTACTTCGTTTTTCAC-T
37360 C-AAATTACTTCGTTTTTCA-T
1 CAAAATTACTTCGTTTTTCACT
37380 CAAAATTAGCTTC
1 CAAAATTA-CTTC
37393 AAAAACAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
20 5 0.17
21 12 0.41
22 12 0.41
ACGTcount: A:0.30, C:0.20, G:0.06, T:0.44
Consensus pattern (22 bp):
CAAAATTACTTCGTTTTTCACT
Found at i:39629 original size:13 final size:13
Alignment explanation
Indices: 39611--39635 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
39601 CATAGGTATT
39611 TGTATCGATACAA
1 TGTATCGATACAA
39624 TGTATCGATACA
1 TGTATCGATACA
39636 TCAGAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:40544 original size:13 final size:13
Alignment explanation
Indices: 40526--40550 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40516 ATATTGCACA
40526 GTATCGATACATT
1 GTATCGATACATT
40539 GTATCGATACAT
1 GTATCGATACAT
40551 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:40669 original size:13 final size:13
Alignment explanation
Indices: 40651--40676 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40641 ACACACAAGA
40651 TGTATCGATACAT
1 TGTATCGATACAT
40664 TGTATCGATACAT
1 TGTATCGATACAT
40677 CCAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:40672 original size:32 final size:33
Alignment explanation
Indices: 40631--40698 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
40621 CCTTAACTGT
* *
40631 TTGTATCGATACA--CACAAGATGTATCGATACA
1 TTGTATCGATACATCCA-AAAATGTATCGACACA
40663 TTGTATCGATACATCCAAAAATGTATCGACACA
1 TTGTATCGATACATCCAAAAATGTATCGACACA
40696 TTG
1 TTG
40699 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 13 0.41
33 17 0.53
34 2 0.06
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (33 bp):
TTGTATCGATACATCCAAAAATGTATCGACACA
Found at i:47805 original size:115 final size:115
Alignment explanation
Indices: 47603--47835 Score: 466
Period size: 115 Copynumber: 2.0 Consensus size: 115
47593 GTATTCACAG
47603 TGGACATTAGGGTTGTACCATTATGGGTATGGTGGTTTCTTTTCCGGAACATAAACTAGAGCCAC
1 TGGACATTAGGGTTGTACCATTATGGGTATGGTGGTTTCTTTTCCGGAACATAAACTAGAGCCAC
47668 CAAATGGTTTTGGAGGAGGGATTGGTAGAGCTCTTTATAGGTCATGGGGA
66 CAAATGGTTTTGGAGGAGGGATTGGTAGAGCTCTTTATAGGTCATGGGGA
47718 TGGACATTAGGGTTGTACCATTATGGGTATGGTGGTTTCTTTTCCGGAACATAAACTAGAGCCAC
1 TGGACATTAGGGTTGTACCATTATGGGTATGGTGGTTTCTTTTCCGGAACATAAACTAGAGCCAC
47783 CAAATGGTTTTGGAGGAGGGATTGGTAGAGCTCTTTATAGGTCATGGGGA
66 CAAATGGTTTTGGAGGAGGGATTGGTAGAGCTCTTTATAGGTCATGGGGA
47833 TGG
1 TGG
47836 GATCAAAATG
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 118 1.00
ACGTcount: A:0.24, C:0.13, G:0.32, T:0.31
Consensus pattern (115 bp):
TGGACATTAGGGTTGTACCATTATGGGTATGGTGGTTTCTTTTCCGGAACATAAACTAGAGCCAC
CAAATGGTTTTGGAGGAGGGATTGGTAGAGCTCTTTATAGGTCATGGGGA
Found at i:55011 original size:21 final size:20
Alignment explanation
Indices: 54979--55024 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
54969 AAGGTGTTGG
*
54979 ACATGCTGTAAATGCATGAA
1 ACATGCTCTAAATGCATGAA
54999 ACATAGCTCTAAATGCATGAA
1 ACAT-GCTCTAAATGCATGAA
*
55020 TCATG
1 ACATG
55025 GGCAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.26
Consensus pattern (20 bp):
ACATGCTCTAAATGCATGAA
Found at i:58817 original size:14 final size:15
Alignment explanation
Indices: 58798--58828 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
58788 ACCATTCATA
58798 ATAGCAA-AAAAACC
1 ATAGCAAGAAAAACC
58812 ATAGCAAGAAAAACC
1 ATAGCAAGAAAAACC
58827 AT
1 AT
58829 TCATAAAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.61, C:0.19, G:0.10, T:0.10
Consensus pattern (15 bp):
ATAGCAAGAAAAACC
Found at i:59064 original size:33 final size:33
Alignment explanation
Indices: 59027--59093 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
59017 ACGAGAACTA
*
59027 AAGTGCTCATCCATGCGCTGTGAGAGTAAAGTG
1 AAGTGCTCATCCATGCGCTGTGAAAGTAAAGTG
* * * *
59060 AAGTGCTCTTTCATGTGCTGTGAAAGTGAAGTG
1 AAGTGCTCATCCATGCGCTGTGAAAGTAAAGTG
59093 A
1 A
59094 TCAACTCTCG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (33 bp):
AAGTGCTCATCCATGCGCTGTGAAAGTAAAGTG
Found at i:66692 original size:20 final size:19
Alignment explanation
Indices: 66667--66721 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
66657 TACTGCCAGT
*
66667 TTCATGTATCGATACATTTG
1 TTCATGTATCGATACA-ATG
*
66687 TTCATGTATTGATACAATG
1 TTCATGTATCGATACAATG
**
66706 AACATGTATCGATACA
1 TTCATGTATCGATACA
66722 CTGTATCGAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (19 bp):
TTCATGTATCGATACAATG
Found at i:66728 original size:13 final size:13
Alignment explanation
Indices: 66710--66734 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
66700 ACAATGAACA
66710 TGTATCGATACAC
1 TGTATCGATACAC
66723 TGTATCGATACA
1 TGTATCGATACA
66735 AAGCATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:67125 original size:19 final size:21
Alignment explanation
Indices: 67086--67125 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
67076 ATGATTTATT
67086 ATGAATTTAATAAAAATATTTG
1 ATGAATTT-ATAAAAATATTTG
67108 ATGAATTT-TAAAAA-ATTT
1 ATGAATTTATAAAAATATTT
67126 AAATTAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.22
20 6 0.33
22 8 0.44
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.42
Consensus pattern (21 bp):
ATGAATTTATAAAAATATTTG
Found at i:71831 original size:30 final size:30
Alignment explanation
Indices: 71778--71836 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
71768 GCCAAACATG
**
71778 TATCGATACACCAAGTATGTATCGATACAA
1 TATCGATACACCAAAAATGTATCGATACAA
71808 TATC-ATACACCAAAAATTGTATCGATACA
1 TATCGATACACCAAAAA-TGTATCGATACA
71837 TTGGCTTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.42, C:0.20, G:0.10, T:0.27
Consensus pattern (30 bp):
TATCGATACACCAAAAATGTATCGATACAA
Found at i:74055 original size:21 final size:22
Alignment explanation
Indices: 74017--74066 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
74007 TTGCAAGTTG
* *
74017 AAATAAAGAAGTTCGCTAATAA
1 AAATAAAGAAGTTAGCTAAGAA
*
74039 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAGAA
74060 AAATAAA
1 AAATAAA
74067 AACTTGCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.58, C:0.06, G:0.14, T:0.22
Consensus pattern (22 bp):
AAATAAAGAAGTTAGCTAAGAA
Found at i:75876 original size:15 final size:15
Alignment explanation
Indices: 75856--75886 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
75846 TAAAAATGTC
*
75856 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
75871 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
75886 C
1 C
75887 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:78153 original size:20 final size:20
Alignment explanation
Indices: 78110--78155 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
78100 AAATCTTTTG
78110 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
78131 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
78151 CAAAA
1 CAAAA
78156 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:79894 original size:25 final size:25
Alignment explanation
Indices: 79860--79917 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
79850 CTAAAATTAC
79860 CTTATTAAGGGGGAGAATGTACGAA
1 CTTATTAAGGGGGAGAATGTACGAA
79885 CTTATTAAGGGGGAGAATGTACGAA
1 CTTATTAAGGGGGAGAATGTACGAA
*
79910 CTTGTTAA
1 CTTATTAA
79918 AATTATTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (25 bp):
CTTATTAAGGGGGAGAATGTACGAA
Found at i:81993 original size:18 final size:17
Alignment explanation
Indices: 81970--82028 Score: 75
Period size: 18 Copynumber: 3.4 Consensus size: 17
81960 CAATTCTAGT
81970 AAAAAAATCGAAAAAACA
1 AAAAAAATCGAAAAAA-A
**
81988 AAAAAAATTTAAAAAAA
1 AAAAAAATCGAAAAAAA
82005 ATAAAAAA-CGAAAAAAA
1 A-AAAAAATCGAAAAAAA
82022 AAAAAAA
1 AAAAAAA
82029 AGAAAAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
16 6 0.17
17 10 0.28
18 20 0.56
ACGTcount: A:0.83, C:0.05, G:0.03, T:0.08
Consensus pattern (17 bp):
AAAAAAATCGAAAAAAA
Found at i:82018 original size:16 final size:16
Alignment explanation
Indices: 81979--82035 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
81969 TAAAAAAATC
*
81979 GAAAAAACAAAAAAAATT
1 GAAAAAA-AAAAAAAA-A
* *
81997 TAAAAAAAATAAAAAAC
1 GAAAAAAAA-AAAAAAA
82014 GAAAAAAAAAAAAAAA
1 GAAAAAAAAAAAAAAA
82030 GAAAAA
1 GAAAAA
82036 TATCCCTTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
16 12 0.35
17 10 0.29
18 12 0.35
ACGTcount: A:0.84, C:0.04, G:0.05, T:0.07
Consensus pattern (16 bp):
GAAAAAAAAAAAAAAA
Found at i:82029 original size:18 final size:17
Alignment explanation
Indices: 81970--82035 Score: 71
Period size: 17 Copynumber: 3.9 Consensus size: 17
81960 CAATTCTAGT
*
81970 AAAAAAATCGAAAAAACA
1 AAAAAAAACGAAAAAA-A
***
81988 AAAAAAATTTAAAAAAA
1 AAAAAAAACGAAAAAAA
*
82005 ATAAAAAACGAAAAAAA
1 AAAAAAAACGAAAAAAA
82022 AAAAAAAA-GAAAAA
1 AAAAAAAACGAAAAA
82036 TATCCCTTTC
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
16 6 0.15
17 21 0.51
18 14 0.34
ACGTcount: A:0.83, C:0.05, G:0.05, T:0.08
Consensus pattern (17 bp):
AAAAAAAACGAAAAAAA
Found at i:83183 original size:29 final size:30
Alignment explanation
Indices: 83141--83200 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
83131 GGAGTACCCT
*
83141 TTTTTAAAGTCCATGACTCAGTGGCATCCC
1 TTTTCAAAGTCCATGACTCAGTGGCATCCC
*
83171 TTTTCAAAG-CCATGACTTAGTGGCATCCC
1 TTTTCAAAGTCCATGACTCAGTGGCATCCC
83200 T
1 T
83201 ATTTTTACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 20 0.71
30 8 0.29
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (30 bp):
TTTTCAAAGTCCATGACTCAGTGGCATCCC
Found at i:83276 original size:30 final size:30
Alignment explanation
Indices: 83240--84960 Score: 1085
Period size: 30 Copynumber: 57.4 Consensus size: 30
83230 TTTTTTTTCA
*
83240 AAAGTCCACAACTCTGTGGTACCCTTTTTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* * *
83270 AAAGTCCACAACTCCGTAGCACCC-TTCTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* * *
83299 AAAGTCTATAACTCTGTGGCACCATTTTTTTT
1 AAAGTCCACAACTCTGTGGCACC--CTTTTTT
*
83331 GAAAGTCCACAACTC--TGGCACCGC-TTTCT
1 -AAAGTCCACAACTCTGTGGCACC-CTTTTTT
* * *
83360 AAAGTCTACAACT-TCGTGGCAGCC-TTCTT
1 AAAGTCCACAACTCT-GTGGCACCCTTTTTT
* *
83389 AAAGTCCATAACAT-TGTGGCACCTTTTTTT
1 AAAGTCCACAAC-TCTGTGGCACCCTTTTTT
* *
83419 CAAAAGTCCACAACTCCGTGGCACCCTTTTCT
1 --AAAGTCCACAACTCTGTGGCACCCTTTTTT
* *
83451 AAAGTCCACAACT-TCGTGGCACCGTTTTCT
1 AAAGTCCACAACTCT-GTGGCACCCTTTTTT
* * * *
83481 AAAGTCCACAACTCTATAGCA-CCTTTGTC
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
*
83510 AAAGTCCACAACTCTGTGGCACCCTTTTCT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* **
83540 AAAGTCCAAAACTCCATGGCA-CC-TTTTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* * *
83568 AAAGTCCAAAACTCTATGGTACCCTTTTTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
** * * *
83598 TTAGTCTACAACTCCGTGGCACCCCTTTTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
**
83628 AAAGTCCACAACTCCATGGCACCCTTTTTTCT
1 AAAGTCCACAACTCTGTGGCACCC-TTTTT-T
*
83660 AAAGTCCACAACTCCGTGGCA-CCTTTTTCT
1 AAAGTCCACAACTCTGTGGCACCCTTTTT-T
* * * * * *
83690 CAAAGTCCATAACCCTATGGCA-CCTATCTC
1 -AAAGTCCACAACTCTGTGGCACCCTTTTTT
* * *** *
83720 AAAATTCACAACTCAACGGCACCC-TTTTG
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* * * * * *
83749 AATGTCTACAACTCTATGGCA-TC-TTCTC
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* ** *
83777 AAAGTCCATAACTCCATGGCA-CCATTTTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
** *
83806 AAAGTCCACAACTCTGTGGCACCC--CCTC
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* **
83834 AAAGTCCATAACTCCCTGGCACCCTTTTTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* * *
83864 TAAGTCCACAACT-TCGTGGCATCCC-TTCTC
1 AAAGTCCACAACTCT-GTGGCA-CCCTTTTTT
* *
83894 AAAGTCCACAACTCTATGGCACCCTTTTCTAA
1 AAAGTCCACAACTCTGTGGCACCCTTTT-T-T
* *
83926 ATAAGTCCACAATTCTGTGGCACCCCTTTTT
1 A-AAGTCCACAACTCTGTGGCACCCTTTTTT
** *
83957 AAAGTCCACAACTCCATAGCACCCTTTTTTCT
1 AAAGTCCACAACTCTGTGGCACCC-TTTTT-T
* * *
83989 AAAGTCCACAA-TTTCGTGGCACCCCTTTCTC
1 AAAGTCCACAACTCT-GTGGCA-CCCTTTTTT
* * * *
84020 AATGTCCATAGCTCTGTGGCACCC-TTCTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* * * * *
84049 ACAGTCCACAACTCCGTGGCACCCCTTCTC
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* ** *
84079 AAAGTCCATAACTCTAAGGTACCCTCTTTTT
1 AAAGTCCACAACTCTGTGGCACCCT-TTTTT
* * *
84110 TAAGTCCACAACT-TCGTGGCACCCTTTCTA
1 AAAGTCCACAACTCT-GTGGCACCCTTTTTT
* * * *
84140 AAAGTCCATAACTCCGTAGCA-CTTTTTTCT
1 AAAGTCCACAACTCTGTGGCACCCTTTTT-T
* **
84170 AAAGTCCACAACTCCGTGGCACCC-TACTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* *
84199 -AAGTCCACAATTCTGTTGCACCACTTTTTT
1 AAAGTCCACAACTCTGTGGCACC-CTTTTTT
* * *
84229 TAAGTCCATAACTCTATGGCA-CCTCTTTTT
1 AAAGTCCACAACTCTGTGGCACCCT-TTTTT
* *
84259 AAAGTCTACAACTCTATGGCACCCTTTTTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* * ** * *
84289 CAAAATCCACAACTCTATGGCATTC-TTCTC
1 -AAAGTCCACAACTCTGTGGCACCCTTTTTT
* *
84319 AAAGTCTACAACTCTGTGGCACCC-TTTTC
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
*
84348 AAAGTCCACAACTCTGTGGCA--CTTTTCTC
1 AAAGTCCACAACTCTGTGGCACCCTTTT-TT
* * * * *
84377 AAAGTCCATAACTCTATGGTACCCCTTTTC
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* * *
84407 AAAGTCGACAACTCCGTGGCA-CCTTTCTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* *
84436 AAAGCCCATAACTCTGTGGCACCCTTTTTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
*
84466 --AGTCCATAACTCTGTGGCACACCTTTTTT
1 AAAGTCCACAACTCTGTGGCAC-CCTTTTTT
** * **
84495 AAAAGTCCGTAACTCCGTGGCATTCTTTTTT
1 -AAAGTCCACAACTCTGTGGCACCCTTTTTT
* * **
84526 AAAGTCCACAATTTTGTGGCACTATTTTTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* *
84556 AAAAAAGTGCACAACT-TCGTGGCACTCTTTTTTT
1 ---AAAGTCCACAACTCT-GTGGCAC-CCTTTTTT
* * *
84590 AAAGTCCATAGCTCCGTGGCA-CCTTTTTCT
1 AAAGTCCACAACTCTGTGGCACCCTTTTT-T
* *
84620 CAAAAGTCCACAACT-TCGTAGCACCCTTTTGCT
1 --AAAGTCCACAACTCT-GTGGCACCCTTTT-TT
* * ** * *
84653 GAAGTTCACAACTCCATGGCACCCCTTTTC
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* *
84683 AAAGTCCACAACTTTGTGGCACCCTTTTCT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* * * *
84713 AATGTCTACAACT-TCGAGGCACCCATTTTT
1 AAAGTCCACAACTCT-GTGGCACCCTTTTTT
* * * * * *
84743 AAAGTTCATAACTATATGGCACCC-TTCTC
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
* *
84772 AAAGTCCACAACT-TCGTGGCACCAC-TTCTC
1 AAAGTCCACAACTCT-GTGGCACC-CTTTTTT
84802 AAAGTCCACAACT-TCGTGGCACCAC--TTTT
1 AAAGTCCACAACTCT-GTGGCACC-CTTTTTT
* * * *
84831 AAAGTCTACAACTTTGTGACACCC-TTTTC
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
*
84860 AAAATCCACAACT-TCGTGGCA-CCTTTTTT
1 AAAGTCCACAACTCT-GTGGCACCCTTTTTT
* * * *
84889 CAAACTCTACAACT-TCATGGCACCCTTTTCT
1 -AAAGTCCACAACTCT-GTGGCACCCTTTTTT
84920 AAAGTCCACAACTCTGTGGCA-CCTTTTTT
1 AAAGTCCACAACTCTGTGGCACCCTTTTTT
*
84949 CAAAGCCCACAA
1 -AAAGTCCACAA
84961 GTTAGTGGCA
Statistics
Matches: 1321, Mismatches: 287, Indels: 166
0.74 0.16 0.09
Matches are distributed among these distances:
27 1 0.00
28 125 0.09
29 335 0.25
30 503 0.38
31 180 0.14
32 107 0.08
33 64 0.05
34 6 0.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (30 bp):
AAAGTCCACAACTCTGTGGCACCCTTTTTT
Found at i:83379 original size:61 final size:61
Alignment explanation
Indices: 83240--84465 Score: 358
Period size: 59 Copynumber: 20.5 Consensus size: 61
83230 TTTTTTTTCA
* * *
83240 AAAGTCCACAACTCTGTGGTACC--CTTTTTTAAAGTCCACAACTCCGTAGCACCCTTCTT
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCCTTCTT
* *
83299 AAAGTCTATAACTCTGTGGCACCATTTTTTTTGAAAGTCCACAACT-C-TGGCACCGCTT-TCT
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTT-AAAGTCCACAACTCCGTAGCACC-CTTCT-T
* * * * * *
83360 AAAGTCTACAACT-TCGTGGCAGCC----TTCTTAAAGTCCATAACAT-TGTGGCACCTTTTTTT
1 AAAGTCTACAACTCT-GTGGCA-CCATTTTTTTTAAAGTCCACAAC-TCCGTAGCACC-CTTCTT
* * * * * * * *
83419 CAAAAGTCCACAACTCCGTGGCACC--CTTTTCTAAAGTCCACAACTTCGTGGCACCGTTTTCT
1 --AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCCTTCT-T
* * * * * * * *
83481 AAAGTCCACAACTCTATAGCACC---TTTGTCAAAGTCCACAACTCTGTGGCACCCTTTTCT
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCCTTCT-T
* * ** * ** * * *
83540 AAAGTCCAAAACTCCATGGCACC----TTTTTAAAGTCCAAAACTCTATGGTACCCTTTTTT
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCC-TTCTT
** * ** * * *
83598 TTAGTCTACAACTCCGTGGCACC--CCTTTTTAAAGTCCACAACTCCATGGCACCCTTTTTTCT
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCC--TTCT-T
* * * * * *
83660 AAAGTCCACAACTCCGTGGCACC-TTTTTCTCAAAGTCCATAAC-CC-TATGGCA-CCTATCTC
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTA--GCACCCT-TCTT
* *** * * * * ** * * *
83720 AAAAT-TCACAACTCAACGGCACC---CTTTTGAATGTCTACAACTCTATGGCA-TCTTCTC
1 AAAGTCT-ACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCCTTCTT
* * ** * * * *
83777 AAAGTCCATAACTCCATGGCACCA---TTTTTAAAGTCCACAACTCTGTGGCACCC-CCTC
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCCTTCTT
* * ** * * * *
83834 AAAGTCCATAACTCCCTGGCACC-CTTTTTTT-AAGTCCACAACTTCGTGGCATCCCTTCTC
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCA-CCCTTCTT
* * * * ** * * * *
83894 AAAGTCCACAACTCTATGGCACCCTTTTCTAAATAAGTCCACAATTCTGTGGCACCCCTTTTT
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTA-AAGTCCACAACTCCGTAGCA-CCCTTCTT
* ** * * * * * * *
83957 AAAGTCCACAACTCCATAGCACCCTTTTTTCTAAAGTCCACAATTTCGTGGCACCCCTTTCTC
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCA-CCC-TTCTT
* * * * * * * * *
84020 AATGTCCATAGCTCTGTGGCACC---CTTCTTACAGTCCACAACTCCGTGGCACCCCTTCTC
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCA-CCCTTCTT
* * ** * * * * * *
84079 AAAGTCCATAACTCTAAGGTACCCTCTTTTTT-AAGTCCACAACTTCGTGGCACCCTTTCTA
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCC-TTCTT
* * * * * * *
84140 AAAGTCCATAACTCCGTAGCA-C-TTTTTTCTAAAGTCCACAACTCCGTGGCACCCTACTT
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCCTTCTT
* * * * * ** * *
84199 -AAGTCCACAATTCTGTTGCACCACTTTTTTT-AAGTCCATAACTCTATGGCACCTCTTTTT
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACC-CTTCTT
* * * * ** * ** *
84259 AAAGTCTACAACTCTATGGCACC-CTTTTTTCAAAATCCACAACTCTATGGCATTCTTCTC
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCCTTCTT
* * * * ** *
84319 AAAGTCTACAACTCTGTGGCACC---CTTTTCAAAGTCCACAACTCTGTGGCACTTTTCTC
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCCTTCTT
* * * * ** * * * *
84377 AAAGTCCATAACTCTATGGTACC--CCTTTTCAAAGTCGACAACTCCGTGGCACCTTTCTT
1 AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCCTTCTT
* * * *
84436 AAAGCCCATAACTCTGTGGCACCCTTTTTT
1 AAAGTCTACAACTCTGTGGCACCATTTTTT
84466 AGTCCATAAC
Statistics
Matches: 935, Mismatches: 178, Indels: 106
0.77 0.15 0.09
Matches are distributed among these distances:
57 79 0.08
58 149 0.16
59 196 0.21
60 193 0.21
61 141 0.15
62 89 0.10
63 88 0.09
ACGTcount: A:0.25, C:0.31, G:0.12, T:0.31
Consensus pattern (61 bp):
AAAGTCTACAACTCTGTGGCACCATTTTTTTTAAAGTCCACAACTCCGTAGCACCCTTCTT
Found at i:83797 original size:117 final size:116
Alignment explanation
Indices: 83421--84418 Score: 336
Period size: 119 Copynumber: 8.4 Consensus size: 116
83411 CTTTTTTTCA
* * * * *** *
83421 AAAGTCCACAACTCCGTGGCACCCTTTTCTAAAGTCCACAA-CTTCGTGGCACCGTTTTCTAAAG
1 AAAGTCCACAACTCCATGGCACCATTTTCTAAAGTCCACAACCCT-ATGGCACC-ACCTC-AAAA
* ** * * *
83485 TCCACAACTCTA-TAGCA-CCTTTGTCAAAGTCCACAAC-TCTGTGGCACCCTTTTC
63 TCCACAACTC-ACTGGCACCCTTT-TTGAAGTCCACAACTTC-ATGGCATCCTTCTC
* * * * * ***
83539 TAAAGTCCAAAACTCCATGGCACC-TTTT-TAAAGTCCAAAACTCTATGGTACC-CTTTTTTTTA
1 -AAAGTCCACAACTCCATGGCACCATTTTCTAAAGTCCACAACCCTATGGCACCAC---CTCAAA
* * * * * *
83601 GTCTACAACTC-CGTGGCACCCCTTTTTAAAGTCCACAACTCCATGGCACCCTTTTTTC
62 ATCCACAACTCAC-TGGCA-CCCTTTTTGAAGTCCACAACTTCATGGCATCC--TTCTC
* * * *
83659 TAAAGTCCACAACTCCGTGGCACCTTTTTCTCAAAGTCCATAACCCTATGGCACCTATCTCAAAA
1 -AAAGTCCACAACTCCATGGCACCATTTTCT-AAAGTCCACAACCCTATGGCACC-ACCTCAAAA
* *
83724 TTCACAACTCAAC-GGCACCC-TTTTGAATGTCTACAAC-TCTATGGCAT-CTTCTC
63 TCCACAACTC-ACTGGCACCCTTTTTGAA-GTCCACAACTTC-ATGGCATCCTTCTC
* * * * *
83777 AAAGTCCATAACTCCATGGCACCATTTT-TAAAGTCCACAACTCTGTGGCACCCCCTCAAAGTCC
1 AAAGTCCACAACTCCATGGCACCATTTTCTAAAGTCCACAACCCTATGGCACCACCTCAAAATCC
* * * *
83841 ATAACTCCCTGGCACCCTTTTTTTAAGTCCACAACTTCGTGGCATCCCTTCTC
66 ACAACTCACTGGCACCC-TTTTTGAAGTCCACAACTTCATGGCAT-CCTTCTC
* * ** * *
83894 AAAGTCCACAACTCTATGGCACCCTTTTCTAAATAAGTCCACAATTCTGTGGCACC-CCTTTTTA
1 AAAGTCCACAACTCCATGGCACCATTTTCT--A-AAGTCCACAACCCTATGGCACCACC---TCA
* * * * * *
83958 AAGTCCACAACTC-CATAGCACCCTTTTTTCTAAAGTCCACAATTTCGTGGCACCCCTTTCTC
60 AAATCCACAACTCAC-TGGCACCC--TTTT-TGAAGTCCACAACTTCATGGCA-TCC-TTCTC
* * * ** * * * * * *
84020 AATGTCCATAGCTCTGTGGCACCCTTCT-TACAGTCCACAACTCC-GTGGCACCCCTTCTCAAAG
1 AAAGTCCACAACTCCATGGCACCATTTTCTAAAGTCCACAAC-CCTATGGCACCAC--CTCAAAA
* * * * * * *
84083 TCCATAACTCTA-AGGTACCCTCTTTTTTAAGTCCACAACTTCGTGGCACCCTTTCTA
63 TCCACAACTC-ACTGGCA-CC-CTTTTTGAAGTCCACAACTTCATGGCATCC-TTCTC
* * * ** * * *
84140 AAAGTCCATAACTCCGTAGCACTTTTTTCTAAAGTCCACAACTCC-GTGGCA-C-CCTACTTAAG
1 AAAGTCCACAACTCCATGGCACCATTTTCTAAAGTCCACAAC-CCTATGGCACCACCT-C-AAAA
* ** * * * * * *
84202 TCCACAATTCTGTTGCACCACTTTTTTTAAGTCCATAAC-TCTATGGCACCTCTTTTT
63 TCCACAACTCACTGGCACC-C-TTTTTGAAGTCCACAACTTC-ATGGCATC-CTTCTC
* * * * * * * ** *
84259 AAAGTCTACAACTCTATGGCACCCTTTTTTCAAAATCCACAACTCTATGGCATTCTTCTCAAAGT
1 AAAGTCCACAACTCCATGGCACCATTTTCT-AAAGTCCACAACCCTATGGCA-CCACCTCAAAAT
* ** ** * *
84324 CTACAACTCTGTGGCACCCTTTTCAAAGTCCACAAC-TCTGTGGCA-CTTTTCTC
64 CCACAACTCACTGGCACCCTTTTTGAAGTCCACAACTTC-ATGGCATC-CTTCTC
* * * * *
84377 AAAGTCCATAACTCTATGGTACCCCTTTTC-AAAGTCGACAAC
1 AAAGTCCACAACTCCATGGCA-CCATTTTCTAAAGTCCACAAC
84419 TCCGTGGCAC
Statistics
Matches: 696, Mismatches: 124, Indels: 120
0.74 0.13 0.13
Matches are distributed among these distances:
113 1 0.00
114 21 0.03
115 34 0.05
116 9 0.01
117 100 0.14
118 62 0.09
119 119 0.17
120 86 0.12
121 102 0.15
122 55 0.08
123 48 0.07
124 7 0.01
125 24 0.03
126 28 0.04
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.31
Consensus pattern (116 bp):
AAAGTCCACAACTCCATGGCACCATTTTCTAAAGTCCACAACCCTATGGCACCACCTCAAAATCC
ACAACTCACTGGCACCCTTTTTGAAGTCCACAACTTCATGGCATCCTTCTC
Found at i:83846 original size:28 final size:28
Alignment explanation
Indices: 83774--83857 Score: 87
Period size: 28 Copynumber: 3.0 Consensus size: 28
83764 ATGGCATCTT
**
83774 CTCAAAGTCCATAACTCCATGGCACCATT
1 CTCAAAGTCCATAACTCCATGGCACC-CC
* * * **
83803 TTTAAAGTCCACAACTCTGTGGCACCCC
1 CTCAAAGTCCATAACTCCATGGCACCCC
*
83831 CTCAAAGTCCATAACTCCCTGGCACCC
1 CTCAAAGTCCATAACTCCATGGCACCC
83858 TTTTTTTAAG
Statistics
Matches: 43, Mismatches: 12, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
28 22 0.51
29 21 0.49
ACGTcount: A:0.27, C:0.38, G:0.12, T:0.23
Consensus pattern (28 bp):
CTCAAAGTCCATAACTCCATGGCACCCC
Found at i:84061 original size:329 final size:325
Alignment explanation
Indices: 83447--84390 Score: 807
Period size: 329 Copynumber: 2.9 Consensus size: 325
83437 TGGCACCCTT
* * * ***
83447 TTCTAAAGTCCACAACTTCGTGGCACCGTTTTCTAAAGTCCACAACTCTATAGCACCTTTGTCAA
1 TTCTAAAGTCCACAACTCCATGGCACCATTTTCTAAAGTCCACAACTCTATAGCACCTCCCTCAA
** * *
83512 AGTCCACAACTCTGTGGCACCCTTTTCTAAAGTCCAAAACTCCATGGCACCTTTTTAAAGTCCAA
66 AGTCCACAACTCCCTGGCACCCTTTTCTAAAGTCCAAAACTCCATGGCACCTTCTCAAAGTCCAA
* * * *
83577 AACTCTATGGTACCCTTTTTTTTAGTCTACAACTCCGTGGCACCCCTTTTTAAAGTCCACAACTC
131 AACTCTATGGCACCCTTTTTATAAGTCCACAACTCCGTGGCACCCCTTTTTAAAGTCCACAACTC
* **
83642 CATGGCACCCTTTTTTCTAAAGTCCACAACTCCGTGGCACCTTTTTCTCAAAGTCCATAACCCTA
196 CATAGCACCCTTTTTTCTAAAGTCCACAACTCCGTGGCACCCCTTTCTCAAAGTCCATAACCCTA
*
83707 TGGCACCTATCTCAAAATTCACAACTCAACGGCACCCTTTTGAATGTCTACAACTCTATGGCATC
261 TGGCACCTATCTCAAAATCCACAACTCAACGGCACCCTTTTGAATGTCTACAACTCTATGGCATC
* * *
83772 TTCTCAAAGTCCATAACTCCATGGCACCATTTT-TAAAGTCCACAACTCTGTGGCACC-CCCTCA
1 TTCT-AAAGTCCACAACTCCATGGCACCATTTTCTAAAGTCCACAACTCTATAGCACCTCCCTCA
* * * * * *
83835 AAGTCCATAACTCCCTGGCACCCTTTTTTTAAGTCCACAACTTCGTGGCATCCCTTCTCAAAGTC
65 AAGTCCACAACTCCCTGGCACCCTTTTCTAAAGTCCAAAACTCCATGGCA--CCTTCTCAAAGTC
* * *
83900 CACAACTCTATGGCACCCTTTTCTAAATAAGTCCACAATTCTGTGGCACCCCTTTTTAAAGTCCA
128 CAAAACTCTATGGCACCCTTTT-T--ATAAGTCCACAACTCCGTGGCACCCCTTTTTAAAGTCCA
* * *
83965 CAACTCCATAGCACCCTTTTTTCTAAAGTCCACAATTTCGTGGCACCCCTTTCTCAATGTCCATA
190 CAACTCCATAGCACCCTTTTTTCTAAAGTCCACAACTCCGTGGCACCCCTTTCTCAAAGTCCATA
* * * * * * *** * * * * *
84030 GCTCTGTGGCACCCT-TCTTACAGTCCACAACTCCGTGGCACCCCTTCTCAAAGTCCATAACTCT
255 ACCCTATGGCA-CCTATCTCAAAATCCACAACTCAACGGCA-CCCTTTTGAATGTCTACAACTCT
* *
84094 AAGGTACCCTC
318 ATGG---CATC
* * * * * * ** * ***
84105 TTTTTTAAGTCCACAACTTCGTGGCACC-CTTTCTAAAAGTCCATAACTCCGTAGCACTTTTTTC
1 -TTCTAAAGTCCACAACTCCATGGCACCATTTTCT-AAAGTCCACAACTCTATAGCACCTCCCTC
* * * * * ** * * **
84169 TAAAGTCCACAACTCCGTGGCACCC--TACTTAAGTCCACAATTCTGTTGCACCACTTTTTTTAA
64 -AAAGTCCACAACTCCCTGGCACCCTTTTCTAAAGTCCAAAACTCCATGGCA-C-C-TTCTCAAA
* * ** * *
84232 GTCCATAACTCTATGGCACCTCTTTTTA-AAGTCTACAACTCTATGGCACCCTTTTTTCAAAATC
125 GTCCAAAACTCTATGGCACC-CTTTTTATAAGTCCACAACTCCGTGGCACCCCTTTTT-AAAGTC
* * * * *
84296 CACAACTCTATGGCA----TTCTTCTCAAAGTCTACAACTCTGTGGCA-CCCTTT-TCAAAGTCC
188 CACAACTCCATAGCACCCTTTTTTCT-AAAGTCCACAACTCCGTGGCACCCCTTTCTCAAAGTCC
* * * * * * *
84355 ACAACTCTGTGGCACTTTTCTCAAAGTCCATAACTC
252 ATAACCCTATGGCACCTATCTCAAAATCCACAACTC
84391 TATGGTACCC
Statistics
Matches: 504, Mismatches: 93, Indels: 41
0.79 0.15 0.06
Matches are distributed among these distances:
324 45 0.09
325 26 0.05
326 55 0.11
327 3 0.01
328 35 0.07
329 131 0.26
330 41 0.08
332 28 0.06
333 44 0.09
334 42 0.08
335 27 0.05
336 27 0.05
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.31
Consensus pattern (325 bp):
TTCTAAAGTCCACAACTCCATGGCACCATTTTCTAAAGTCCACAACTCTATAGCACCTCCCTCAA
AGTCCACAACTCCCTGGCACCCTTTTCTAAAGTCCAAAACTCCATGGCACCTTCTCAAAGTCCAA
AACTCTATGGCACCCTTTTTATAAGTCCACAACTCCGTGGCACCCCTTTTTAAAGTCCACAACTC
CATAGCACCCTTTTTTCTAAAGTCCACAACTCCGTGGCACCCCTTTCTCAAAGTCCATAACCCTA
TGGCACCTATCTCAAAATCCACAACTCAACGGCACCCTTTTGAATGTCTACAACTCTATGGCATC
Found at i:84569 original size:33 final size:33
Alignment explanation
Indices: 84526--84643 Score: 100
Period size: 33 Copynumber: 3.7 Consensus size: 33
84516 ATTCTTTTTT
* *
84526 AAAGTCCACAATTTTGTGGCACTATTTTTTAAA
1 AAAGTCCACAACTTCGTGGCACTATTTTTTAAA
* * *
84559 AAAGTGCACAACTTCGTGGCACTCTTTTTT--T
1 AAAGTCCACAACTTCGTGGCACTATTTTTTAAA
* * * * *
84590 AAAGTCCATAGCTCCGTGGCACCT-TTTTCT-CA
1 AAAGTCCACAACTTCGTGGCA-CTATTTTTTAAA
*
84622 AAAGTCCACAACTTCGTAGCAC
1 AAAGTCCACAACTTCGTGGCAC
84644 CCTTTTGCTG
Statistics
Matches: 68, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
31 23 0.34
32 19 0.28
33 26 0.38
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (33 bp):
AAAGTCCACAACTTCGTGGCACTATTTTTTAAA
Found at i:84969 original size:30 final size:29
Alignment explanation
Indices: 84669--85144 Score: 172
Period size: 30 Copynumber: 15.7 Consensus size: 29
84659 CACAACTCCA
* * *
84669 TGGCACCCCTTTTCAAAGTCCACAACTTTG
1 TGGCA-CCTTTTTCAAAGCCCACAACTTGG
* * * * *
84699 TGGCACCCTTTTCTAATGTCTACAACTTCG
1 TGGCACCTTTTTC-AAAGCCCACAACTTGG
* ** * *
84729 AGGCACCCATTTTT-AAAGTTCATAACTAT-A
1 TGGCA-CC-TTTTTCAAAGCCCACAACT-TGG
* * * *
84759 TGGCACCCTTCTCAAAGTCCACAACTTCG
1 TGGCACCTTTTTCAAAGCCCACAACTTGG
* * * *
84788 TGGCACCACTTCTCAAAGTCCACAACTTCG
1 TGGCACC-TTTTTCAAAGCCCACAACTTGG
* * * *
84818 TGGCACCACTTTT-AAAGTCTACAACTTTG
1 TGGCACC-TTTTTCAAAGCCCACAACTTGG
* * ** *
84847 TGACACCCTTTTCAAAATCCACAACTTCG
1 TGGCACCTTTTTCAAAGCCCACAACTTGG
* **
84876 TGGCACCTTTTTTCAAA-CTCTACAACTTCA
1 TGGCACC-TTTTTCAAAGC-CCACAACTTGG
* *
84906 TGGCACCCTTTTCTAAAGTCCACAACTCT-G
1 TGGCACCTTTTTC-AAAGCCCACAACT-TGG
* *
84936 TGGCACCTTTTTTCAAAGCCCACAAGTTAG
1 TGGCACC-TTTTTCAAAGCCCACAACTTGG
** * * **
84966 TGGCATCCCATTTCAAAGCCCATAAGTCAG
1 TGGCA-CCTTTTTCAAAGCCCACAACTTGG
* *
84996 TGGCACTTTTTTCAAAGCCCATACAAGTTGG
1 TGGCACCTTTTTCAAAGCCC--ACAACTTGG
* * *
85027 TGGTAACCCTTTTT-AAACGCCTACACAAGTCGG
1 TGG-CA-CCTTTTTCAAA-GCC--CACAACTTGG
* * *
85060 TGGCAACTATTTCAAAGCCCACACAAGTTGG
1 TGGCACCTTTTTCAAAG-CC-CACAACTTGG
* * *
85091 TCGCAACCTCTTTCAAAGCCAACACAAGTTGG
1 TGGC-ACCTTTTTCAAAGCC--CACAACTTGG
* *
85123 TCGCAACCTCTTTCAAAGCCCA
1 TGGC-ACCTTTTTCAAAGCCCA
85145 GAAAGTTGAT
Statistics
Matches: 364, Mismatches: 55, Indels: 54
0.77 0.12 0.11
Matches are distributed among these distances:
28 9 0.02
29 85 0.23
30 152 0.42
31 41 0.11
32 56 0.15
33 20 0.05
35 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
TGGCACCTTTTTCAAAGCCCACAACTTGG
Found at i:85110 original size:32 final size:32
Alignment explanation
Indices: 84946--85471 Score: 270
Period size: 32 Copynumber: 16.8 Consensus size: 32
84936 TGGCACCTTT
* *
84946 TTTCAAAG-CC-CACAAGTTAGTGGCATCC-C
1 TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
* ** * *
84975 ATTTCAAAG-CC-CATAAGTCAGTGGC-ACTTT
1 -TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
* *
85005 TTTCAAAGCCCATACAAGTTGGTGGTAACC-C
1 TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
* * * *
85036 TTTTTAAACGCCTACACAAGTCGGTGGCAA-CTA
1 -TTTCAAA-GCCCACACAAGTTGGTGGCAACCTC
*
85069 TTTCAAAGCCCACACAAGTTGGTCGCAACCTC
1 TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
* *
85101 TTTCAAAGCCAACACAAGTTGGTCGCAACCTC
1 TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
* *
85133 TTTCAAAGCCCAGA-AAGTTGAT-GCTAACCTC
1 TTTCAAAGCCCACACAAGTTGGTGGC-AACCTC
* * *** *
85164 TTTTAAAGTCCACACAAGTCAATGGCAA-GTC
1 TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
*
85195 TTTTCAAAG--C-C-C-A--T-GCGGCAACCTC
1 -TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
* * * ** *
85220 TTTCAAAACCCATATAAGTCAGTGGCAACCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
* * * * *
85252 TTTCAAAGGCCACACAAGTCGATGACAACCCC
1 TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
* * *
85284 TTTCAAAAGCCCACACAAATTGGTGGC-ATCTT
1 TTTC-AAAGCCCACACAAGTTGGTGGCAACCTC
** * * * *
85316 TTTTTAAGCCCACATAAATCGGTGACAACC-C
1 TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
* * *
85347 TTTCAAAGCCCACACAAGTTGGTGGCATCTTTTT
1 TTTCAAAGCCCACACAAGTTGGTGGCAAC--CTC
* *
85381 TTTCAAA-CCCAACACAAGTTAGTGGTAATCC-C
1 TTTCAAAGCCC-ACACAAGTTGGTGGCAA-CCTC
* * * * *
85413 TTTTAAAGCCCACACAACTCGGTGGTAACCTT
1 TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
* * * *
85445 TTTAAAAGCCTATACAAGTTAGTGGCA
1 TTTCAAAGCCCACACAAGTTGGTGGCA
85472 TCTCCTTTTA
Statistics
Matches: 372, Mismatches: 94, Indels: 58
0.71 0.18 0.11
Matches are distributed among these distances:
24 12 0.03
25 2 0.01
26 1 0.00
27 1 0.00
28 1 0.00
29 11 0.03
30 27 0.07
31 95 0.26
32 158 0.42
33 42 0.11
34 21 0.06
35 1 0.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (32 bp):
TTTCAAAGCCCACACAAGTTGGTGGCAACCTC
Found at i:85200 original size:63 final size:63
Alignment explanation
Indices: 85005--85207 Score: 209
Period size: 63 Copynumber: 3.2 Consensus size: 63
84995 GTGGCACTTT
* * *
85005 TTTCAAAGCCCATACAAGTTGGTGGTAACC-CTTTTTAAACGCCTACACAAGTCGGTGGCAACTA
1 TTTCAAAGCCCACACAAGTTGGTGCTAACCTC-TTTTAAA-GCCAACACAAGTCGGTGGCAACTA
* * * *
85069 TTTCAAAGCCCACACAAGTTGGTCGC-AACCTCTTTCAAAGCCAACACAAGTTGGTCGCAACCTC
1 TTTCAAAGCCCACACAAGTTGGT-GCTAACCTCTTTTAAAGCCAACACAAGTCGGTGGCAA-CTA
* * **
85133 TTTCAAAGCCCAGA-AAGTTGATGCTAACCTCTTTTAAAGTCC-ACACAAGTCAATGGCAAGTCT
1 TTTCAAAGCCCACACAAGTTGGTGCTAACCTCTTTTAAAG-CCAACACAAGTCGGTGGCAA--CT
85196 -
63 A
85196 TTTCAAAGCCCA
1 TTTCAAAGCCCA
85208 TGCGGCAACC
Statistics
Matches: 118, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
62 2 0.02
63 63 0.53
64 51 0.43
65 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.25
Consensus pattern (63 bp):
TTTCAAAGCCCACACAAGTTGGTGCTAACCTCTTTTAAAGCCAACACAAGTCGGTGGCAACTA
Found at i:85288 original size:88 final size:88
Alignment explanation
Indices: 85125--85296 Score: 199
Period size: 88 Copynumber: 2.0 Consensus size: 88
85115 CAAGTTGGTC
* * * *
85125 GCAACCTCTTTCAAAGCCCAGAAAGTTGATGCTAACCTCTTTTAAAGTCCACACAAGTCAATGGC
1 GCAACCTCTTTCAAAACCCAGAAAGTAGATGCTAACCTCTTTTAAAGGCCACACAAGTCAATGAC
** *
85190 AAGTCTTTTC-AAAGCCCATGCG
66 AACCCCTTTCAAAAGCCCATGCG
* *
85212 GCAACCTCTTTCAAAACCCATATAAGTCAG-TGGC-AACCT-TTTTCAAAGGCCACACAAGTCGA
1 GCAACCTCTTTCAAAACCCAGA-AAGT-AGAT-GCTAACCTCTTTT-AAAGGCCACACAAGTCAA
85274 TGACAACCCCTTTCAAAAGCCCA
62 TGACAACCCCTTTCAAAAGCCCA
85297 CACAAATTGG
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
87 24 0.34
88 36 0.51
89 11 0.15
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.23
Consensus pattern (88 bp):
GCAACCTCTTTCAAAACCCAGAAAGTAGATGCTAACCTCTTTTAAAGGCCACACAAGTCAATGAC
AACCCCTTTCAAAAGCCCATGCG
Found at i:85317 original size:64 final size:62
Alignment explanation
Indices: 85249--85380 Score: 183
Period size: 62 Copynumber: 2.1 Consensus size: 62
85239 CAGTGGCAAC
* *
85249 CTTTTTCAAAGGCCACACAAGTCGATGACAACCCCTTTCAAAAGCCCACACAAATTGGTGGCAT
1 CTTTTTCAAAGCCCACACAAATCGATGACAA-CCCTTTC-AAAGCCCACACAAATTGGTGGCAT
** * * *
85313 CTTTTTTTAAGCCCACATAAATCGGTGACAACCCTTTCAAAGCCCACACAAGTTGGTGGCAT
1 CTTTTTCAAAGCCCACACAAATCGATGACAACCCTTTCAAAGCCCACACAAATTGGTGGCAT
85375 CTTTTT
1 CTTTTT
85381 TTTCAAACCC
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 29 0.48
63 7 0.11
64 25 0.41
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (62 bp):
CTTTTTCAAAGCCCACACAAATCGATGACAACCCTTTCAAAGCCCACACAAATTGGTGGCAT
Found at i:85437 original size:66 final size:62
Alignment explanation
Indices: 85261--85429 Score: 178
Period size: 62 Copynumber: 2.6 Consensus size: 62
85251 TTTTCAAAGG
* *
85261 CCACACAAGTC-GATGACAACCCCTTTCAAAAGCCCACACAAATTGGTGGCATCTTTTTTTAAGC
1 CCACACAAATCAG-TGACAA-CCCTTTC-AAAGCCCACACAAATTGGTGGCATCTTTTTTTAAAC
* * *
85325 CCACATAAATCGGTGACAACCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTTTTTTTCAAAC
1 CCACACAAATCAGTGACAACCCTTTCAAAGCCCACACAAATTGGTGGCATC-TTTTTTT-AAAC
* * ** *
85389 CCAACACAAGTTAGTGGTAATCCCTTTTAAAGCCCACACAA
1 CC-ACACAAATCAGTGACAA-CCCTTTCAAAGCCCACACAA
85430 CTCGGTGGTA
Statistics
Matches: 89, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
62 24 0.27
63 14 0.16
64 20 0.22
65 12 0.13
66 19 0.21
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (62 bp):
CCACACAAATCAGTGACAACCCTTTCAAAGCCCACACAAATTGGTGGCATCTTTTTTTAAAC
Found at i:85449 original size:31 final size:31
Alignment explanation
Indices: 85241--85450 Score: 116
Period size: 31 Copynumber: 6.5 Consensus size: 31
85231 ATATAAGTCA
* * *
85241 GTGGCAACCTTTTTCAAAGGCCACACAAGTCG
1 GTGGCAACCTTTTT-AAAGCCCACACAAATTG
* * **
85273 ATGACAACCCCTTTCAAAAGCCCACACAAATTG
1 GTGGCAA--CCTTTTTAAAGCCCACACAAATTG
* * * * *
85306 GTGGCATCTTTTTTTAAGCCCACATAAATCG
1 GTGGCAACCTTTTTAAAGCCCACACAAATTG
* * * *
85337 GTGACAACCCTTTCAAAGCCCACACAAGTTG
1 GTGGCAACCTTTTTAAAGCCCACACAAATTG
* * * *
85368 GTGGCATCTTTTTTTTCAAA-CCCAACACAAGTTA
1 GTGGCAAC--CTTTTT-AAAGCCC-ACACAAATTG
* * * *
85402 GTGGTAATCCCTTTTAAAGCCCACACAACTCG
1 GTGGCAA-CCTTTTTAAAGCCCACACAAATTG
*
85434 GTGGTAACCTTTTTAAA
1 GTGGCAACCTTTTTAAA
85451 AGCCTATACA
Statistics
Matches: 131, Mismatches: 39, Indels: 17
0.70 0.21 0.09
Matches are distributed among these distances:
31 55 0.42
32 22 0.17
33 31 0.24
34 22 0.17
35 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (31 bp):
GTGGCAACCTTTTTAAAGCCCACACAAATTG
Found at i:85612 original size:52 final size:52
Alignment explanation
Indices: 85556--85863 Score: 258
Period size: 52 Copynumber: 5.9 Consensus size: 52
85546 AAAGTCGTTG
* * * *
85556 GCCTTGAATCAGCACATTAGCATTCTTCTTATCTGTAAGTCCAATGTCACTA
1 GCCTTGAATCAGCATATTAGCACTCTTCTCATCTTTAAGTCCAATGTCACTA
** * *
85608 GCCTTGAATTGGCATATTAGCACTCTTCACATCTTTAAGTCCAATGTCGCTA
1 GCCTTGAATCAGCATATTAGCACTCTTCTCATCTTTAAGTCCAATGTCACTA
* * * * * ** * * * ** *
85660 GTCTTGAATTAGGATATTGGCA-TCTTTATTGTCCTTAAATTCAATGTCGTTG
1 GCCTTGAATCAGCATATTAGCACTC-TTCTCATCTTTAAGTCCAATGTCACTA
* ** * * * * * *
85712 GCCTTGAACCAATACATTGGCACTCTTCTCATCTTTAAGTCTAATATTACTG
1 GCCTTGAATCAGCATATTAGCACTCTTCTCATCTTTAAGTCCAATGTCACTA
* * * * * *
85764 GCCTTGAGTCAGCATATTAGCACTCTTCCCATCTTTAAGTCTAATATTACTG
1 GCCTTGAATCAGCATATTAGCACTCTTCTCATCTTTAAGTCCAATGTCACTA
* *
85816 GCCTTGAATCAGCATATTAGCACTCTTATCATCATTAAGTCCAATGTC
1 GCCTTGAATCAGCATATTAGCACTCTTCTCATCTTTAAGTCCAATGTC
85864 GGTAGCTTTA
Statistics
Matches: 202, Mismatches: 52, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
51 2 0.01
52 198 0.98
53 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (52 bp):
GCCTTGAATCAGCATATTAGCACTCTTCTCATCTTTAAGTCCAATGTCACTA
Found at i:85878 original size:52 final size:52
Alignment explanation
Indices: 85556--85904 Score: 157
Period size: 52 Copynumber: 6.7 Consensus size: 52
85546 AAAGTCGTTG
* * * * * *
85556 GCCTTGAATCAGCACATTAGCATTCTTCTTATC-TGTAAGTCCAATGTCACTA
1 GCCTTAAATCAGCATATTAGCACTCTTATCATCAT-TAAGTCCAATATCACTA
* ** * * *
85608 GCCTTGAATTGGCATATTAGCACTCTTCA-CATCTTTAAGTCCAATGTCGCTA
1 GCCTTAAATCAGCATATTAGCACTCTT-ATCATCATTAAGTCCAATATCACTA
* * * * * ** * * * * ** *
85660 GTCTTGAATTAGGATATTGGCA-TCTTTATTGTCCTTAAATTCAATGTCGTTG
1 GCCTTAAATCAGCATATTAGCACTC-TTATCATCATTAAGTCCAATATCACTA
* * ** * * * * * * *
85712 GCCTTGAACCAATACATTGGCACTCTTCTCATCTTTAAGTCTAATATTACTG
1 GCCTTAAATCAGCATATTAGCACTCTTATCATCATTAAGTCCAATATCACTA
* * ** * * * *
85764 GCCTTGAGTCAGCATATTAGCACTCTTCCCATCTTTAAGTCTAATATTACTG
1 GCCTTAAATCAGCATATTAGCACTCTTATCATCATTAAGTCCAATATCACTA
* * **
85816 GCCTTGAATCAGCATATTAGCACTCTTATCATCATTAAGTCCAATGTCGGTA
1 GCCTTAAATCAGCATATTAGCACTCTTATCATCATTAAGTCCAATATCACTA
* * * *
85868 GCTTTAAATCATCACATTGGCA-TCTTTATCATCATTA
1 GCCTTAAATCAGCATATTAGCACTC-TTATCATCATTA
85905 TGTCTAGTGT
Statistics
Matches: 234, Mismatches: 57, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
51 5 0.02
52 226 0.97
53 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (52 bp):
GCCTTAAATCAGCATATTAGCACTCTTATCATCATTAAGTCCAATATCACTA
Found at i:85885 original size:156 final size:155
Alignment explanation
Indices: 85539--85893 Score: 372
Period size: 156 Copynumber: 2.3 Consensus size: 155
85529 TATCTTTTTC
* * * * *
85539 TAAGTCCAAAGTCGTTGGCCTTGAATCAGCACATTAGCATTCTTCTTATCTGTAAGTCCAATGTC
1 TAAGTCCAATGTCGTTGGCCTTGAATCATCACATTGGCA-TCTTCTCATCTGTAAGTCCAATATC
** * * *
85604 ACTAGCCTTGAATTGGCATATTAGCACTCTTCACATCTTTAAGTCCAATGTCGCTAGTCTTGAAT
65 ACTAGCCTTGAATCAGCATATTAGCACTCTTCACATCTTTAAGTCCAATATCACTAGCCTTGAAT
* * * ** *
85669 TAGGATATTGGCATCTTTATTGTCCT
130 CAGCATATTAGCATCTTTATCATCAT
* * * * *
85695 TAAATTCAATGTCGTTGGCCTTGAACCAAT-ACATTGGCACTCTTCTCATCTTTAAGTCTAATAT
1 TAAGTCCAATGTCGTTGGCCTTGAATC-ATCACATTGGCA-TCTTCTCATCTGTAAGTCCAATAT
* * * * * * *
85759 TACTGGCCTTGAGTCAGCATATTAGCACTCTTCCCATCTTTAAGTCTAATATTACTGGCCTTGAA
64 CACTAGCCTTGAATCAGCATATTAGCACTCTTCACATCTTTAAGTCCAATATCACTAGCCTTGAA
85824 TCAGCATATTAGCA-CTCTTATCATCAT
129 TCAGCATATTAGCATCT-TTATCATCAT
* * * *
85851 TAAGTCCAATGTCGGTAGCTTTAAATCATCACATTGGCATCTT
1 TAAGTCCAATGTCGTTGGCCTTGAATCATCACATTGGCATCTT
85894 TATCATCATT
Statistics
Matches: 160, Mismatches: 36, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
155 8 0.05
156 151 0.94
157 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (155 bp):
TAAGTCCAATGTCGTTGGCCTTGAATCATCACATTGGCATCTTCTCATCTGTAAGTCCAATATCA
CTAGCCTTGAATCAGCATATTAGCACTCTTCACATCTTTAAGTCCAATATCACTAGCCTTGAATC
AGCATATTAGCATCTTTATCATCAT
Found at i:99233 original size:13 final size:13
Alignment explanation
Indices: 99215--99239 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99205 CAAAGATCAG
99215 TGTATCGATACAA
1 TGTATCGATACAA
99228 TGTATCGATACA
1 TGTATCGATACA
99240 TTTTTTGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:99300 original size:13 final size:13
Alignment explanation
Indices: 99282--99306 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99272 AAAAAAAATA
99282 TGTATCGATACAT
1 TGTATCGATACAT
99295 TGTATCGATACA
1 TGTATCGATACA
99307 ACACTTTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:100053 original size:42 final size:42
Alignment explanation
Indices: 100007--100964 Score: 479
Period size: 42 Copynumber: 22.8 Consensus size: 42
99997 TAGATAAGGC
* *
100007 AGTCTCCAAGGTCAAAGCTGATAGGCAGACTGAGGGTAGGAA
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGTAGGAA
* * * *
100049 AGTCTCCAAGGTCAAAGCTGATAAGCAGACTTGA--G-ATGAA
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGAC-TGAGGGTAGGAA
* * * * *
100089 GCAGTCTCTAAGGTCAAAGCCGACAGACAGACTAAGGGTAGGAA
1 --AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGTAGGAA
* * ** *
100133 AGTCTCTAGGGTCAAAGCTGACAGGCAGACTTTA-AATGAGG-C
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGAC-TGAGGGT-AGGAA
* ** *
100175 AGTCTCCAAGGTCAAAGCCAATAGGCAGACTGAGGGTAGGAA
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGTAGGAA
* * * * * *
100217 AGTGTCCAAGGTCAAAGCCGACAGGCAAACT-AGAGATAAGG-T
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAG-GGT-AGGAA
* * * * *
100259 AGTCTACAGGGTCAAA-TTCGATAGGCAGACAGAGGGTAGCAA
1 AGTCTCCAGGGTCAAAGCT-GACAGGCAGACTGAGGGTAGGAA
* * * * *** *
100301 AGTCTCCAGGGTCAAAGCGGACAAGCACACTTAAAATAAGG-C
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGT-AGGAA
** * **
100343 AGTCTTTAGGGTTAAAGCCAACAGGCAGACTGAGGGTAGGAA
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGTAGGAA
* * * *
100385 AGTCTCCAAGGTCAAAGCTGATAGGCAGACT-AGAGATAAGG-T
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAG-GGT-AGGAA
* * * *
100427 AGTCTCTAGGGTCAAAGCTGATAGGCAGACAGAGGTTAGGAA
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGTAGGAA
* * * * * * * *
100469 AGTGTCCAGGGTCAAAGCCGACAAGCACACTTAAGATAAGG-C
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGT-AGGAA
** * **
100511 AGTCTTTAGGGTTAAAGCCAACAGGCAGACTGAGGGTAGGAA
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGTAGGAA
* * * * * *
100553 AGTATCTAGGGTCAAAGCTGATAGGCAGACTTGA-GATGATG-C
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGAC-TGAGGGT-AGGAA
* * * *
100595 AGTCTCCAAGATCAAAGCTGACAGGCAGACTTGAGATGAAGG--
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGAC-TGAG-GGTAGGAA
** * * * * *
100637 AGTCTCTTGGGTCAAAGCCGATAGGCAGATTAAGGGAAGGAA
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGTAGGAA
* * * * *
100679 AATCT-TACGATCAAAGCCGACAGGCAGACTGAGGGTAGGAA
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGTAGGAA
* * * * *
100720 AGTCTCTAGGGTCAATGCTGACAGGCAGACTTTA-GATGAGG-T
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGAC-TGAGGGT-AGGAA
** * * * * *
100762 AGTCTCCAGGGTCAAAGCCAACATGCAGATTGAGCGAAAGAA
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGTAGGAA
* * * * * * * *
100804 AGTTTCCGGGGTTAAAGCTGACAAGCAAACT-ATAGATGAGG-T
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGA-GGGT-AGGAA
* * * * *
100846 TGTCTCCAGGGTTAAAG-TCGATAGGCAGACTGAGGGCAAGAA
1 AGTCTCCAGGGTCAAAGCT-GACAGGCAGACTGAGGGTAGGAA
* * * *
100888 AGTCTCCAAGGTCAAAGCTGATAGGCAGACTTGA-GATGAGG-C
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGAC-TGAGGGT-AGGAA
* *
100930 AGTCTCCAAGGTCAAAGCTGATAGGCAGACTGAGG
1 AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGG
100965 AAAGAAAAGT
Statistics
Matches: 682, Mismatches: 190, Indels: 88
0.71 0.20 0.09
Matches are distributed among these distances:
40 9 0.01
41 70 0.10
42 554 0.81
43 45 0.07
44 4 0.01
ACGTcount: A:0.34, C:0.18, G:0.30, T:0.18
Consensus pattern (42 bp):
AGTCTCCAGGGTCAAAGCTGACAGGCAGACTGAGGGTAGGAA
Found at i:100974 original size:84 final size:84
Alignment explanation
Indices: 99978--101015 Score: 895
Period size: 84 Copynumber: 12.4 Consensus size: 84
99968 TACAAAGGTT
* * * * * * *
99978 AAAGTTGACAGGCAAACTTTAGATAAGGCAGTCTCCAAGGTCAAAGCTGATAGGCAGACTGAGGG
1 AAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGGG
*
100043 TAGGAAAGTCTCCAAGGTC
66 TAGGAAAGTCTCCAGGGTC
* * * * * * *
100062 AAAGCTGATAAGCAGACTTGAGATGAAGCAGTCTCTAAGGTCAAAGCCGACAGACAGACTAAGGG
1 AAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGGG
*
100127 TAGGAAAGTCTCTAGGGTC
66 TAGGAAAGTCTCCAGGGTC
* * * * *
100146 AAAGCTGACAGGCAGACTTTAAATGAGGCAGTCTCCAAGGTCAAAGCCAATAGGCAGACTGAGGG
1 AAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGGG
* *
100211 TAGGAAAGTGTCCAAGGTC
66 TAGGAAAGTCTCCAGGGTC
* * * * * * ** * *
100230 AAAGCCGACAGGCAAACTAGAGATAAGGTAGTCTACAGGGTCAAATTCGATAGGCAGACAGAGGG
1 AAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGGG
*
100295 TAGCAAAGTCTCCAGGGTC
66 TAGGAAAGTCTCCAGGGTC
* * * * * * ** * *
100314 AAAGCGGACAAGCACACTTAAAATAAGGCAGTCTTTAGGGTTAAAGCCAACAGGCAGACTGAGGG
1 AAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGGG
*
100379 TAGGAAAGTCTCCAAGGTC
66 TAGGAAAGTCTCCAGGGTC
* * * * * * * * *
100398 AAAGCTGATAGGCAGACTAGAGATAAGGTAGTCTCTAGGGTCAAAGCTGATAGGCAGACAGAGGT
1 AAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGGG
*
100463 TAGGAAAGTGTCCAGGGTC
66 TAGGAAAGTCTCCAGGGTC
* * * * * ** * *
100482 AAAGCCGACAAGCACACTTAAGATAAGGCAGTCTTTAGGGTTAAAGCCAACAGGCAGACTGAGGG
1 AAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGGG
* *
100547 TAGGAAAGTATCTAGGGTC
66 TAGGAAAGTCTCCAGGGTC
* * * * *
100566 AAAGCTGATAGGCAGACTTGAGATGATGCAGTCTCCAAGATCAAAGCTGACAGGCAGACTTGAGA
1 AAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGAC-TGAG-
* * **
100631 TGAAGG--AGTCTCTTGGGTC
64 GGTAGGAAAGTCTCCAGGGTC
* * * * * * * * *
100650 AAAGCCGATAGGCAGA-TTAAG-GGAAGGAAAATCT-TACGATCAAAGCCGACAGGCAGACTGAG
1 AAAGCTGACAGGCAGACTTGAGATG-AGG-CAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAG
*
100712 GGTAGGAAAGTCTCTAGGGTC
64 GGTAGGAAAGTCTCCAGGGTC
* * * * * * *
100733 AATGCTGACAGGCAGACTTTAGATGAGGTAGTCTCCAGGGTCAAAGCCAACATGCAGATTGAGCG
1 AAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGGG
* * * * *
100798 AAAGAAAGTTTCCGGGGTT
66 TAGGAAAGTCTCCAGGGTC
* * ** * * *
100817 AAAGCTGACAAGCAAACTAT-AGATGAGGTTGTCTCCAGGGTTAAAGTCGATAGGCAGACTGAGG
1 AAAGCTGACAGGCAGACT-TGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGG
* * *
100881 GCAAGAAAGTCTCCAAGGTC
65 GTAGGAAAGTCTCCAGGGTC
* * * * *
100901 AAAGCTGATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCTGATAGGCAGACTGAGGA
1 AAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGGG
* * * *
100966 AAGAAAAGTC-CCTAGGATT
66 TAGGAAAGTCTCC-AGGGTC
* *
100985 AAAG-TAGACAGGTAGACTTTAGATGAGGCAG
1 AAAGCT-GACAGGCAGACTTGAGATGAGGCAG
101016 ACTGAGGGAA
Statistics
Matches: 763, Mismatches: 178, Indels: 26
0.79 0.18 0.03
Matches are distributed among these distances:
81 4 0.01
82 5 0.01
83 60 0.08
84 684 0.90
85 6 0.01
86 4 0.01
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (84 bp):
AAAGCTGACAGGCAGACTTGAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAGGCAGACTGAGGG
TAGGAAAGTCTCCAGGGTC
Found at i:101504 original size:21 final size:22
Alignment explanation
Indices: 101464--101513 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
101454 TGTTCATGAT
*
101464 TTGATTTGATTCTTTCTATGTC
1 TTGATTTGATTCTTTCTATGGC
*
101486 TT-ATTTG-TTCATTTTTATGGC
1 TTGATTTGATTC-TTTCTATGGC
101507 TTGATTT
1 TTGATTT
101514 ACTCTACTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 3 0.12
21 15 0.62
22 6 0.25
ACGTcount: A:0.14, C:0.10, G:0.14, T:0.62
Consensus pattern (22 bp):
TTGATTTGATTCTTTCTATGGC
Found at i:106281 original size:25 final size:22
Alignment explanation
Indices: 106244--106297 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 22
106234 TCCAACAAAC
106244 ACAAGCAGCAACAATAGCAGCTCCA
1 ACAAGCAGCAAC---AGCAGCTCCA
106269 ACAAGCA-CGAACAGCAGCTCCA
1 ACAAGCAGC-AACAGCAGCTCCA
106291 ACAAGCA
1 ACAAGCA
106298 TGACAGCAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
22 17 0.61
24 1 0.04
25 10 0.36
ACGTcount: A:0.44, C:0.33, G:0.17, T:0.06
Consensus pattern (22 bp):
ACAAGCAGCAACAGCAGCTCCA
Found at i:106284 original size:22 final size:22
Alignment explanation
Indices: 106259--106401 Score: 93
Period size: 22 Copynumber: 6.8 Consensus size: 22
106249 CAGCAACAAT
106259 AGCAGCTCCAACAAGCACGAAC
1 AGCAGCTCCAACAAGCACGAAC
*
106281 AGCAGCTCCAACAAGCATG-AC
1 AGCAGCTCCAACAAGCACGAAC
* ** * *
106302 AGCAACAACAGCAATTC-C-AAC
1 AGCAGCTCCAACAA-GCACGAAC
* * **
106323 A--AGC-ACAGC-AGCAATAAC
1 AGCAGCTCCAACAAGCACGAAC
* *
106341 AGTAGCTCCAACAAGCACGAGC
1 AGCAGCTCCAACAAGCACGAAC
* *
106363 AGTAGCTTCAACAAGCACGAAC
1 AGCAGCTCCAACAAGCACGAAC
*
106385 AGCAGCTCCAATAAGCA
1 AGCAGCTCCAACAAGCA
106402 GGACAAGCAA
Statistics
Matches: 93, Mismatches: 20, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
16 1 0.01
17 1 0.01
18 9 0.10
19 2 0.02
20 3 0.03
21 18 0.19
22 59 0.63
ACGTcount: A:0.42, C:0.31, G:0.17, T:0.09
Consensus pattern (22 bp):
AGCAGCTCCAACAAGCACGAAC
Found at i:106312 original size:30 final size:30
Alignment explanation
Indices: 106278--106364 Score: 104
Period size: 30 Copynumber: 2.9 Consensus size: 30
106268 AACAAGCACG
*
106278 AACAGCAGCTCCAACAAGCA-TGACAGCAAC
1 AACAGCAGCTCCAACAAGCACAG-CAGCAAC
** *
106308 AACAGCAATTCCAACAAGCACAGCAGCAAT
1 AACAGCAGCTCCAACAAGCACAGCAGCAAC
*
106338 AACAGTAGCTCCAACAAGCACGAGCAG
1 AACAGCAGCTCCAACAAGCAC-AGCAG
106365 TAGCTTCAAC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
30 42 0.88
31 6 0.12
ACGTcount: A:0.44, C:0.31, G:0.17, T:0.08
Consensus pattern (30 bp):
AACAGCAGCTCCAACAAGCACAGCAGCAAC
Found at i:106417 original size:31 final size:31
Alignment explanation
Indices: 106373--106451 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 31
106363 AGTAGCTTCA
** * * *
106373 ACAAGCACGAACAGCAGCTCCAATAAGCAGG
1 ACAAGCAATAACAGCACCTCCAACAAGCACG
*
106404 ACAAGCAATAACAGCACCTTCAACAAGCACG
1 ACAAGCAATAACAGCACCTCCAACAAGCACG
*
106435 ACAGTAACAATAACAGC
1 ACA--AGCAATAACAGC
106452 TCTAACAAGT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 28 0.72
33 11 0.28
ACGTcount: A:0.46, C:0.29, G:0.16, T:0.09
Consensus pattern (31 bp):
ACAAGCAATAACAGCACCTCCAACAAGCACG
Found at i:106459 original size:105 final size:104
Alignment explanation
Indices: 106262--106524 Score: 316
Period size: 105 Copynumber: 2.5 Consensus size: 104
106252 CAACAATAGC
*
106262 AGCTCCAACAAGCACGAACAGCAGCTCCAACAAGCATGACAGCAACAACAGCAATTCCAACAAGC
1 AGCTCCAACAAGCACGAACAGCAGCTCCAACAAGCAGGACAGCAACAACAGCAATTCCAACAAGC
* ** * *
106327 ACAGCAGCAATAACAGTAGCTCCAACAAGCACGAGCAGT
66 ACAGCAGCAACAACAACAGCTCCAACAAGCACGAACAGA
* * * *
106366 AGCTTCAACAAGCACGAACAGCAGCTCCAATAAGCAGGACAAGCAATAACAGCACCTT-CAACAA
1 AGCTCCAACAAGCACGAACAGCAGCTCCAACAAGCAGGAC-AGCAACAACAGCA-ATTCCAACAA
* * * * *
106430 GCAC-GACAGTAACAATAACAGCTCTAACAAGTATGAACAGA
64 GCACAG-CAGCAACAACAACAGCTCCAACAAGCACGAACAGA
* *
106471 AGCTCCAACAAGCATGAACAGCAGCTCCAACAAGCATGG-CAGCAACAATAGCAA
1 AGCTCCAACAAGCACGAACAGCAGCTCCAACAAGCA-GGACAGCAACAACAGCAA
106525 AAGAAGAGAA
Statistics
Matches: 134, Mismatches: 21, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
104 49 0.37
105 81 0.60
106 4 0.03
ACGTcount: A:0.43, C:0.29, G:0.17, T:0.10
Consensus pattern (104 bp):
AGCTCCAACAAGCACGAACAGCAGCTCCAACAAGCAGGACAGCAACAACAGCAATTCCAACAAGC
ACAGCAGCAACAACAACAGCTCCAACAAGCACGAACAGA
Found at i:106474 original size:22 final size:22
Alignment explanation
Indices: 106449--106508 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 22
106439 TAACAATAAC
* *
106449 AGCTCTAACAAGTATGAACAGA
1 AGCTCCAACAAGCATGAACAGA
*
106471 AGCTCCAACAAGCATGAACAGC
1 AGCTCCAACAAGCATGAACAGA
106493 AGCTCCAACAAGCATG
1 AGCTCCAACAAGCATG
106509 GCAGCAACAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.42, C:0.27, G:0.18, T:0.13
Consensus pattern (22 bp):
AGCTCCAACAAGCATGAACAGA
Found at i:109561 original size:32 final size:30
Alignment explanation
Indices: 109525--109583 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
109515 GAAATCAAAT
109525 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
109557 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
109584 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:109882 original size:13 final size:13
Alignment explanation
Indices: 109864--109889 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
109854 ATATTTTATG
109864 TGTATCGATACAT
1 TGTATCGATACAT
109877 TGTATCGATACAT
1 TGTATCGATACAT
109890 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:109901 original size:19 final size:19
Alignment explanation
Indices: 109843--109907 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
109833 TACAAGCCAA
109843 TGTATCGATACATATTTTATG
1 TGTATCGATACATA-TTT-TG
109864 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
109877 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
109896 TGTATCGATACA
1 TGTATCGATACA
109908 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
18 1 0.03
19 13 0.34
21 11 0.29
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.43
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:109903 original size:32 final size:34
Alignment explanation
Indices: 109843--109907 Score: 116
Period size: 32 Copynumber: 2.0 Consensus size: 34
109833 TACAAGCCAA
109843 TGTATCGATACATATTTTATGTGTATCGATACAT
1 TGTATCGATACATATTTTATGTGTATCGATACAT
109877 TGTATCGATACATA-TTT-TGTGTATCGATACA
1 TGTATCGATACATATTTTATGTGTATCGATACA
109908 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 14 0.45
33 3 0.10
34 14 0.45
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.43
Consensus pattern (34 bp):
TGTATCGATACATATTTTATGTGTATCGATACAT
Found at i:112457 original size:13 final size:13
Alignment explanation
Indices: 112439--112476 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
112429 ATAATCCCCC
*
112439 TGTATCGATATAG
1 TGTATCGATACAG
*
112452 TGTATCGATACAT
1 TGTATCGATACAG
112465 TGTATCGATACA
1 TGTATCGATACA
112477 AAGAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:116420 original size:21 final size:21
Alignment explanation
Indices: 116391--116435 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
116381 AAGTTTTTAT
*
116391 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
116411 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
116433 TTT
1 TTT
116436 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:118352 original size:32 final size:30
Alignment explanation
Indices: 118316--118374 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
118306 GAAATCAAAT
118316 ACAAAGAGCT-TAGAAAAATAATAACAATATGA
1 ACAAA-AGCTCTAGAAAAAT-ATAA-AATATGA
*
118348 ACAAAAGCTCTTGAAAAATATAAAATA
1 ACAAAAGCTCTAGAAAAATATAAAATA
118375 CTTTGATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 4 0.16
31 8 0.32
32 13 0.52
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.20
Consensus pattern (30 bp):
ACAAAAGCTCTAGAAAAATATAAAATATGA
Found at i:118652 original size:13 final size:13
Alignment explanation
Indices: 118634--118691 Score: 62
Period size: 13 Copynumber: 4.0 Consensus size: 13
118624 TACAAGCCAA
118634 TGTATCGATACAT
1 TGTATCGATACAT
118647 TGTATCGATACATATTTT
1 TGTATCGATAC--A---T
118665 GTGTATCGATACAT
1 -TGTATCGATACAT
118679 TGTATCGATACAT
1 TGTATCGATACAT
118692 ATTTTGTGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 24 0.62
14 1 0.03
15 1 0.03
17 1 0.03
18 1 0.03
19 11 0.28
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:118671 original size:19 final size:19
Alignment explanation
Indices: 118647--118709 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
118637 ATCGATACAT
118647 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
118666 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
118679 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
118698 TGTATCGATACA
1 TGTATCGATACA
118710 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
17 1 0.03
18 1 0.03
19 23 0.61
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.43
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:118675 original size:32 final size:32
Alignment explanation
Indices: 118634--118709 Score: 152
Period size: 32 Copynumber: 2.4 Consensus size: 32
118624 TACAAGCCAA
118634 TGTATCGATACATTGTATCGATACATATTTTG
1 TGTATCGATACATTGTATCGATACATATTTTG
118666 TGTATCGATACATTGTATCGATACATATTTTG
1 TGTATCGATACATTGTATCGATACATATTTTG
118698 TGTATCGATACA
1 TGTATCGATACA
118710 AGTTTGGCTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACATATTTTG
Found at i:130102 original size:42 final size:42
Alignment explanation
Indices: 130037--130142 Score: 122
Period size: 42 Copynumber: 2.5 Consensus size: 42
130027 TTATACCCCC
* * * *
130037 AGTCTGCTTGTCGGCCTTAACCTTATAGACTACCCCATCTAA
1 AGTCTACTTGTCAGCTTTGACCTTATAGACTACCCCATCTAA
* *
130079 AGTCTACTTGTCAGCTTTGACCTTGTAGACTGCCCCATCTAA
1 AGTCTACTTGTCAGCTTTGACCTTATAGACTACCCCATCTAA
* * * *
130121 AGTTTTCCTGTTAGCTTTGACC
1 AGTCTACTTGTCAGCTTTGACC
130143 CTAGACATTG
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (42 bp):
AGTCTACTTGTCAGCTTTGACCTTATAGACTACCCCATCTAA
Found at i:130249 original size:85 final size:85
Alignment explanation
Indices: 130151--132276 Score: 648
Period size: 85 Copynumber: 25.0 Consensus size: 85
130141 CCCTAGACAT
* * *
130151 TGCCTCATTTAAAGTCTGCCCGTCAGCTTTGTTCC-TGGAGACTTTTCTCTCCCTAAGTCTACCT
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTG-TCCATGGAGACTTTCCTATCCCTAAGTCTACCT
*
130215 ATCGGCTTTGACCTTGGAGAC
65 GTCGGCTTTGACCTTGGAGAC
* * *** * * * ***
130236 TGCCTCATTTAAAGTCTGCCTATCGGCTCCATCCCTCGAGACTTTCCTATCTCTAAGTCTGGTTG
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCTG
* * * *
130301 CCGGCTTTGACCCTAGAGAG
66 TCGGCTTTGACCTTGGAGAC
** * * * * * *
130321 T-TTTCGATCCCTT--AGTGTGCCTGTCAGCTTTGACCCTAGAGAC-TACCTTAT--TTAAAGTC
1 TGCCTC-AT---TTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCC-TATCCCT-AAGTC
* *
130380 TCCCTGTCAGCTTTGACCTTGGAGAC
60 TACCTGTCGGCTTTGACCTTGGAGAC
* * * * *
130406 TGCCTTATTTAAAGTCTGTCTAT-TGAATTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCT
1 TGCCTCATTTAAAGTCTGCCTGTCAG-CTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCT
* *
130470 GTCGGCTTTGACCCTGGAGAT
65 GTCGGCTTTGACCTTGGAGAC
* * * * * * * *
130491 TCCCTCTTTTAAAGTCTGCTTATCGGATTTGTCCATAGAGACTTTCCTATCCCTAAGTCTACTTG
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCTG
* * * *
130556 TCTGCCTTGACCTTTGAGGC
66 TCGGCTTTGACCTTGGAGAC
* * * * ** * * *
130576 TGCCTCACTTAAAGTCTGCTTGCCGGCTTCATCCCTGGAGACTTTCCTATCCCTAAATCTGCCTG
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCTG
*
130641 TCGGCTTTGACCCTGGAGAC
66 TCGGCTTTGACCTTGGAGAC
*** * * * * ** * * * * *
130661 TTTTTTATCTCT-TAGTCTGTCTGTCAACTTTAACCCTAGAGAC-TGCCTCAT--TTAAAGTTTA
1 TGCCTCAT-T-TAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCT-ATCCCT-AAGTCTA
* * * * *
130722 CCTATCAGCTTCGTCCTTGGAGATT
62 CCTGTCGGCTTTGACCTTGGAGA-C
* * * * * * * *
130747 TTCCT-ATCTCT-AAGTCTGCTTGTCAGCTTTGACCTTGGAGACTTTTCTATCTCTTAGTCTGCC
1 TGCCTCAT-T-TAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACC
* * * *
130810 TATCGGCTTTGACCCTAGAGAT
64 TGTCGGCTTTGACCTTGGAGAC
* * * * * * * * *
130832 TACCTCATTTAAAGTTTGCTTGTCGGCTTTGTCCTTGGAGACTTTCCTATGCTTACGTCTACCTA
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCTG
* * * * *
130897 CCAGCTTTCACACTAGCA-AC
66 TCGGCTTTGAC-CTTGGAGAC
* * * *
130917 TGCCTCATTTAAAGTCTACTTGTC-GACTTCGTCCGTGGAGACTTTCCTATCCCTAAGTCTACCT
1 TGCCTCATTTAAAGTCTGCCTGTCAG-CTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCT
* *
130981 GTTGGCTTTGACCTTGTAGAC
65 GTCGGCTTTGACCTTGGAGAC
** * * * * * * *
131002 T-TTTCTATCTCT-TAGTCTGCTTGTCAGCTTTGACCCTAGAGAC-TACCTCAT--TTAAAGTCT
1 TGCCTC-AT-T-TAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCT-ATCCCT-AAGTCT
* * * *
131062 GCCTGTCAG-TTTCGTCCTTGGAGATT
61 ACCTGTCGGCTTT-GACCTTGGAGA-C
* * * * * *
131088 TTCCT-ATCCCT-AAGTCTGCCTGTCAGCTTTGACACCA--GAGA-ATGCCTCAT--TTAAAGTC
1 TGCCTCAT--TTAAAGTCTGCCTGTCAGCTTTG--TCCATGGAGACTTTCCT-ATCCCT-AAGTC
* * * *
131146 TGCTTGTCGGC-TTCACCCCTGGAGAC
60 TACCTGTCGGCTTTGA-CCTTGGAGAC
* * * * * ** * * * * **
131172 TTTCCT-ATCCCT-AAGTCTGCTTGTCGGCATTCACCCTAGAGACTTTTCTATCCCTTAGTCTGT
1 -TGCCTCAT--TTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTAC
*
131235 CTGTCGGCTTTGACCTTGGAGAT
63 CTGTCGGCTTTGACCTTGGAGAC
* * * *
131258 TGCCTCTTTTAAAGCCTGCCTGTCAACTTTATCC-TCGGAGACTTTCCTATCCCTAAGTCTACCT
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCAT-GGAGACTTTCCTATCCCTAAGTCTACCT
* ** * *
131322 ATTAGCTTTTACCCTGGAGAC
65 GTCGGCTTTGACCTTGGAGAC
* * * * * * *
131343 TGCCTAATTTAAAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCTTAT-CCTTAGTCTGCCTG
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCTG
**
131407 TCAACTTT--CC-TGGAGAC
66 TCGGCTTTGACCTTGGAGAC
* * * * * * * *
131424 TGCCTCATTTAAAGTCTACCTATCAGCTTTGACCCTAGAGACTTTTCTA-CCCTTAGTCTGCCTG
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCTG
* *
131488 TCGGCTTT-ATCCCTAGAGAC
66 TCGGCTTTGA-CCTTGGAGAC
* * * * * * * * *
131508 TTTCCT-ATCCCTAAAGTCTGCATGTCGGCTTTGACCCTGGAGAC-TGCCTCAT--TTAAAATCT
1 -TGCCTCAT--TTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCT-ATCCCT-AAGTCT
* * * **
131569 ACCTGTCAGCTTTGTCCCTAAAGAC
61 ACCTGTCGGCTTTGACCTTGGAGAC
** * * * * * * * *
131594 ATTTCT-ATCCCT-AAGTCTACCTATTAGCTTTGACCCTAGAGACTGCTT--TAT--TTAAAGTC
1 -TGCCTCAT--TTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACT--TTCCTATCCCT-AAGTC
* * * * ** *
131653 TACTTGTCAGCTTTGTCCCTATAAAC
60 TACCTGTCGGCTTTGACCTTGGAGAC
** * ** * * * * *
131679 TTTTCTAACCCT-AAGTCTGCCTGTCAACTTTG-ACACTGGAGACTTTTCTATCTCTTAGTCTAC
1 -TGCCTCA-TTTAAAGTCTGCCTGTCAGCTTTGTCCA-TGGAGACTTTCCTATCCCTAAGTCTAC
* * * * *
131742 CTATCGGCATTGACCCTAGAGAT
63 CTGTCGGCTTTGACCTTGGAGAC
* * ** * *
131765 TGCCTCTTTTAAAGTCTACCTGTTGGCTTTGTCCTTAGAGACTTTCCTATCCCTAAGTCTACCTG
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCTG
** * * *
131830 TCAACTTTGACCCTAGAGAA
66 TCGGCTTTGACCTTGGAGAC
* * * * * * *
131850 TGTCTCATTTAAAGTCTGTCTATCGGCTTTATCCCTGGAGACTTTCCTATCCCTAAGTCTGCCTG
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCTG
*
131915 TCGGCTTTGACCTTTGAGAC
66 TCGGCTTTGACCTTGGAGAC
*** * * * * * * *
131935 TTTTTTATCCCTT--AGTCTGCTTGTCGGCTTTGACCCTAGAGACTACTT-C-AT--TTAAAGTC
1 TGCCTCAT---TTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACT--TTCCTATCCCT-AAGTC
* * * * * * * *
131994 TATCTGTCTGCATCGTCCCTAGAAAC
60 TACCTGTCGGCTTTGACCTTGGAGAC
* * * * * * ** * *
132020 TTTCCT-ATCCCT-AAGTTTG-CTGGTCAGCTTTGACCTTAGAGACTTTTTTATCCCTTAGTCTG
1 -TGCCTCAT--TTAAAGTCTGCCT-GTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTA
* *
132082 CCTGTCGGCTTTAACCCTGGAGAC
62 CCTGTCGGCTTTGACCTTGGAGAC
* * * * * *
132106 TGCCTCATTTAAAGTCTGCCTATCGGCTTTGTCCCTAGAAACTTTCCTATCCGTAAGTCTACCTG
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCTG
* * * ** *
132171 TCAGCATTAACCTTAAAGAT
66 TCGGCTTTGACCTTGGAGAC
* * * * * * * * * *
132191 TGCCCCATTTAAAGTCTGCCTATGAGCTTCGTCCCTGGACACTTTTCGATCCCTAAGTCTGCCTA
1 TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCTG
*
132256 TCGACTTTGACCCTT-GAGAC
66 TCGGCTTTGA-CCTTGGAGAC
132276 T
1 T
132277 TTTCTATCCA
Statistics
Matches: 1533, Mismatches: 414, Indels: 188
0.72 0.19 0.09
Matches are distributed among these distances:
81 67 0.04
82 4 0.00
83 10 0.01
84 77 0.05
85 1067 0.70
86 286 0.19
87 15 0.01
88 7 0.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (85 bp):
TGCCTCATTTAAAGTCTGCCTGTCAGCTTTGTCCATGGAGACTTTCCTATCCCTAAGTCTACCTG
TCGGCTTTGACCTTGGAGAC
Found at i:130397 original size:42 final size:42
Alignment explanation
Indices: 130340--130422 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 42
130330 CCTTAGTGTG
130340 CCTGTCAGCTTTGACCCTAGAGACTACCTTATTTAAAGTCTC
1 CCTGTCAGCTTTGACCCTAGAGACTACCTTATTTAAAGTCTC
* * *
130382 CCTGTCAGCTTTGACCTTGGAGACTGCCTTATTTAAAGTCT
1 CCTGTCAGCTTTGACCCTAGAGACTACCTTATTTAAAGTCT
130423 GTCTATTGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.35
Consensus pattern (42 bp):
CCTGTCAGCTTTGACCCTAGAGACTACCTTATTTAAAGTCTC
Found at i:130707 original size:128 final size:128
Alignment explanation
Indices: 130575--130881 Score: 398
Period size: 128 Copynumber: 2.4 Consensus size: 128
130565 ACCTTTGAGG
* * * * *
130575 CTGCCTCACTTAAAGTCTGCTTGCCGGCTTCATCCCTGGAGACTTTCCTATCCCTAAATCTGCCT
1 CTGCCTCATTTAAAGTTTGCTTGTCGGCTTCGTCCTTGGAGACTTTCCTATCCCTAAATCTGCCT
* * * *
130640 GTCGGCTTTGACCCTGGAGACTTTTTTATCTCTTAGTCTGTCTGTCAACTTTAACCCTAGAGA
66 GTCAGCTTTGACCCTGGAGACTTTTCTATCTCTTAGTCTGCCTATCAACTTTAACCCTAGAGA
* * * * * * * *
130703 CTGCCTCATTTAAAGTTTACCTATCAGCTTCGTCCTTGGAGATTTTCCTATCTCTAAGTCTGCTT
1 CTGCCTCATTTAAAGTTTGCTTGTCGGCTTCGTCCTTGGAGACTTTCCTATCCCTAAATCTGCCT
* ** *
130768 GTCAGCTTTGACCTTGGAGACTTTTCTATCTCTTAGTCTGCCTATCGGCTTTGACCCTAGAGA
66 GTCAGCTTTGACCCTGGAGACTTTTCTATCTCTTAGTCTGCCTATCAACTTTAACCCTAGAGA
* * *
130831 TTACCTCATTTAAAGTTTGCTTGTCGGCTTTGTCCTTGGAGACTTTCCTAT
1 CTGCCTCATTTAAAGTTTGCTTGTCGGCTTCGTCCTTGGAGACTTTCCTAT
130882 GCTTACGTCT
Statistics
Matches: 150, Mismatches: 29, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
128 150 1.00
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.38
Consensus pattern (128 bp):
CTGCCTCATTTAAAGTTTGCTTGTCGGCTTCGTCCTTGGAGACTTTCCTATCCCTAAATCTGCCT
GTCAGCTTTGACCCTGGAGACTTTTCTATCTCTTAGTCTGCCTATCAACTTTAACCCTAGAGA
Found at i:130873 original size:213 final size:213
Alignment explanation
Indices: 130327--132597 Score: 1618
Period size: 213 Copynumber: 10.7 Consensus size: 213
130317 AGAGTTTTCG
* * * ** * * *
130327 ATCCCTTAGTGTGCCTGTCAGCTTTGACCCTAGAGAC-TACCTTAT-T-TAAAGTCTCCCTGTCA
1 ATCCCTAAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTTTC-TATCTCT-TAGTCTGCCTATCA
* * * * * * * ** *
130389 GCTTTGACCTTGGAGACTGCCTTATTTAAAGTCTGTCTATTGAATTTGTCCATGGAGACTTTCCT
64 GCTTTGACCCTAGAGATTGCCTCATTTAAAGTCTGCCTGTCGGCTTTGTCCTTGGAGACTTTCCT
* * * * * * * * * *
130454 ATCCCTAAGTCTACCTGTCGGCTTTGACCCTGGAGATTCCCTCTTTTAAAGTCTGCTTATCGGAT
129 ATCCCTAAGTCTACCTGTCAGCTTTGACCCTAGAGACTGCCTCATTTAAAGTCTACCTGTCAGCT
* * *
130519 TTGTCCATAGAGACTTTCCT
194 TCGTCCCTGGAGACTTTCCT
* * * * * * ** * * ** *
130539 ATCCCTAAGTCTACTTGTCTGCCTTGACCTTTGAGGC-TGCCTCA-CT-TAAAGTCTGCTTGCCG
1 ATCCCTAAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTTTCT-ATCTCT-TAGTCTGCCTATCA
* * * * * *
130601 GC-TTCATCCCTGGAGACTTTCCT-ATCCCTAAA-TCTGCCTGTCGGCTTTGACCCTGGAGACTT
64 GCTTTGA-CCCTAGAGA-TTGCCTCAT--TTAAAGTCTGCCTGTCGGCTTTGTCCTTGGAGACTT
** * * ** * * * *
130663 TTTTATCTCTTAGTCTGTCTGTCAACTTTAACCCTAGAGACTGCCTCATTTAAAGTTTACCTATC
125 TCCTATCCCTAAGTCTACCTGTCAGCTTTGACCCTAGAGACTGCCTCATTTAAAGTCTACCTGTC
* *
130728 AGCTTCGTCCTTGGAGATTTTCCT
190 AGCTTCGTCCCTGGAGACTTTCCT
* * * *
130752 ATCTCTAAGTCTGCTTGTCAGCTTTGACCTTGGAGACTTTTCTATCTCTTAGTCTGCCTATCGGC
1 ATCCCTAAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTTTCTATCTCTTAGTCTGCCTATCAGC
* * *
130817 TTTGACCCTAGAGATTACCTCATTTAAAGTTTGCTTGTCGGCTTTGTCCTTGGAGACTTTCCTAT
66 TTTGACCCTAGAGATTGCCTCATTTAAAGTCTGCCTGTCGGCTTTGTCCTTGGAGACTTTCCTAT
* * * ** * * *
130882 GCTTACGTCTACCTACCAGCTTTCACACTAGCA-ACTGCCTCATTTAAAGTCTACTTGTC-GACT
131 CCCTAAGTCTACCTGTCAGCTTTGACCCTAG-AGACTGCCTCATTTAAAGTCTACCTGTCAG-CT
*
130945 TCGTCCGTGGAGACTTTCCT
194 TCGTCCCTGGAGACTTTCCT
* ** * *
130965 ATCCCTAAGTCTACCTGTTGGCTTTGACCTT-GTAGACTTTTCTATCTCTTAGTCTGCTTGTCAG
1 ATCCCTAAGTCTGCCTGTCAGCTTTGACCTTAG-AGACTTTTCTATCTCTTAGTCTGCCTATCAG
* * * *
131029 CTTTGACCCTAGAGACTACCTCATTTAAAGTCTGCCTGTCAG-TTTCGTCCTTGGAGATTTTCCT
65 CTTTGACCCTAGAGATTGCCTCATTTAAAGTCTGCCTGTCGGCTTT-GTCCTTGGAGACTTTCCT
* * * * *
131093 ATCCCTAAGTCTGCCTGTCAGCTTTGACACC-AGAGAATGCCTCATTTAAAGTCTGCTTGTCGGC
129 ATCCCTAAGTCTACCTGTCAGCTTTGAC-CCTAGAGACTGCCTCATTTAAAGTCTACCTGTCAGC
**
131157 TTCACCCCTGGAGACTTTCCT
193 TTCGTCCCTGGAGACTTTCCT
* * * * * * * * *
131178 ATCCCTAAGTCTGCTTGTCGGCATTCACCCTAGAGACTTTTCTATCCCTTAGTCTGTCTGTCGGC
1 ATCCCTAAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTTTCTATCTCTTAGTCTGCCTATCAGC
* * * * ** * *
131243 TTTGACCTTGGAGATTGCCTCTTTTAAAGCCTGCCTGTCAACTTTATCCTCGGAGACTTTCCTAT
66 TTTGACCCTAGAGATTGCCTCATTTAAAGTCTGCCTGTCGGCTTTGTCCTTGGAGACTTTCCTAT
* * * * * * *
131308 CCCTAAGTCTACCTATTAGCTTTTACCCTGGAGACTGCCTAATTTAAAGTCTGCCTGTCGGCTTC
131 CCCTAAGTCTACCTGTCAGCTTTGACCCTAGAGACTGCCTCATTTAAAGTCTACCTGTCAGCTTC
*
131373 GTCCCTGGAGACTTTCTT
196 GTCCCTGGAGACTTTCCT
* * * ** * *
131391 AT-CCTTAGTCTGCCTGTCAACTTT--CC-TGGAGAC-TGCCTCAT-T-TAAAGTCTACCTATCA
1 ATCCCTAAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTTTCT-ATCTCT-TAGTCTGCCTATCA
** ** * * *
131449 GCTTTGACCCTAGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTATCCCTAGAGACTTTC
64 GCTTTGACCCTAGAGA-TTGCCT-CATTTAAAGTCTGCCTGTCGGCTTTGTCCTTGGAGACTTTC
* * * * *
131512 CTATCCCTAAAGTCTGCATGTCGGCTTTGACCCTGGAGACTGCCTCATTTAAAATCTACCTGTCA
127 CTATCCCT-AAGTCTACCTGTCAGCTTTGACCCTAGAGACTGCCTCATTTAAAGTCTACCTGTCA
* **
131577 GCTTTGTCCCTAAAGACATTT-CT
191 GCTTCGTCCCTGGAGAC-TTTCCT
* * * * * * * * *
131600 ATCCCTAAGTCTACCTATTAGCTTTGACCCTAGAGACTGCTT-TAT-T-TAAAGTCTACTTGTCA
1 ATCCCTAAGTCTGCCTGTCAGCTTTGACCTTAGAGACT-TTTCTATCTCT-TAGTCTGCCTATCA
* * * ** * ** ** *
131662 GCTTTGTCCCTATAAACTTTTCTAACCCT-AAGTCTGCCTGTCAACTTTGACAC-TGGAGACTTT
64 GCTTTGACCCTAGAGA-TTGCCTCA-TTTAAAGTCTGCCTGTCGGCTTTGTC-CTTGGAGACTTT
* * * * * * * * **
131725 TCTATCTCTTAGTCTACCTATCGGCATTGACCCTAGAGATTGCCTCTTTTAAAGTCTACCTGTTG
126 CCTATCCCTAAGTCTACCTGTCAGCTTTGACCCTAGAGACTGCCTCATTTAAAGTCTACCTGTCA
* * *
131790 GCTTTGTCCTTAGAGACTTTCCT
191 GCTTCGTCCCTGGAGACTTTCCT
* * * * * * * *
131813 ATCCCTAAGTCTACCTGTCAACTTTGACCCTAGAGA-ATGTCTCAT-T-TAAAGTCTGTCTATCG
1 ATCCCTAAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTTTCT-ATCTCT-TAGTCTGCCTATCA
* * * * *
131875 GCTTT-ATCCCTGGAGACTTTCCT-ATCCCT-AAGTCTGCCTGTCGGCTTTGACCTTTGAGACTT
64 GCTTTGA-CCCTAGAGA-TTGCCTCAT--TTAAAGTCTGCCTGTCGGCTTTGTCCTTGGAGACTT
** * * * * * * *
131937 TTTTATCCCTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTACTTCATTTAAAGTCTATCTGTC
125 TCCTATCCCTAAGTCTACCTGTCAGCTTTGACCCTAGAGACTGCCTCATTTAAAGTCTACCTGTC
* * * *
132002 TGCATCGTCCCTAGAAACTTTCCT
190 AGCTTCGTCCCTGGAGACTTTCCT
* * * * *
132026 ATCCCTAAGTTTG-CTGGTCAGCTTTGACCTTAGAGACTTTTTTATCCCTTAGTCTGCCTGTCGG
1 ATCCCTAAGTCTGCCT-GTCAGCTTTGACCTTAGAGACTTTTCTATCTCTTAGTCTGCCTATCAG
* * * * * * *
132090 CTTTAACCCTGGAGACTGCCTCATTTAAAGTCTGCCTATCGGCTTTGTCCCTAGAAACTTTCCTA
65 CTTTGACCCTAGAGATTGCCTCATTTAAAGTCTGCCTGTCGGCTTTGTCCTTGGAGACTTTCCTA
* * * * * * * * * *
132155 TCCGTAAGTCTACCTGTCAGCATTAACCTTAAAGATTGCCCCATTTAAAGTCTGCCTATGAGCTT
130 TCCCTAAGTCTACCTGTCAGCTTTGACCCTAGAGACTGCCTCATTTAAAGTCTACCTGTCAGCTT
* * *
132220 CGTCCCTGGACACTTTTCG
195 CGTCCCTGGAGACTTTCCT
* * *
132239 ATCCCTAAGTCTGCCTATC-GACTTTGACCCTT-GAGACTTTTCTATC-CATTAGTCTACTTATC
1 ATCCCTAAGTCTGCCTGTCAG-CTTTGA-CCTTAGAGACTTTTCTATCTC-TTAGTCTGCCTATC
* * * * * *
132301 AGCTTTGACCCTAGAAACTGTCTCATTTAAAGTCTGCCTATAGGCTTTGTCCTTGGAGACTTTCT
63 AGCTTTGACCCTAGAGATTGCCTCATTTAAAGTCTGCCTGTCGGCTTTGTCCTTGGAGACTTTCC
* * * * * **
132366 TATCCCTAAGTCTACCTGTCGGCTTTGACCTTGGAGACTACCTCATTTAAAGTCTGCCTACCCA-
128 TATCCCTAAGTCTACCTGTCAGCTTTGACCCTAGAGACTGCCTCATTTAAAGTCTACCT-GTCAG
* *
132430 CTTCATCCGTGGAGACTTTCCT
192 CTTCGTCCCTGGAGACTTTCCT
** * * * * *
132452 ATCCCTAAGTCTGCCTGTTGGCTTTGACCATGGAGACTTTTCTATCCCTTAGTTTGCCTATCAAC
1 ATCCCTAAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTTTCTATCTCTTAGTCTGCCTATCAGC
* * * ** *
132517 TTTGACCCTGGAGACTGCCTCATTTAAAGTCTGCTTGTCGGCTTTCACCTTGGAGACTTTTCTA-
66 TTTGACCCTAGAGATTGCCTCATTTAAAGTCTGCCTGTCGGCTTTGTCCTTGGAGACTTTCCTAT
* *
132581 CCCTTAGTCTGCCTGTC
131 CCCTAAGTCTACCTGTC
132598 GACTTTCACC
Statistics
Matches: 1646, Mismatches: 354, Indels: 118
0.78 0.17 0.06
Matches are distributed among these distances:
207 1 0.00
208 62 0.04
209 75 0.05
210 25 0.02
211 5 0.00
212 117 0.07
213 1243 0.76
214 111 0.07
215 7 0.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (213 bp):
ATCCCTAAGTCTGCCTGTCAGCTTTGACCTTAGAGACTTTTCTATCTCTTAGTCTGCCTATCAGC
TTTGACCCTAGAGATTGCCTCATTTAAAGTCTGCCTGTCGGCTTTGTCCTTGGAGACTTTCCTAT
CCCTAAGTCTACCTGTCAGCTTTGACCCTAGAGACTGCCTCATTTAAAGTCTACCTGTCAGCTTC
GTCCCTGGAGACTTTCCT
Found at i:131336 original size:128 final size:127
Alignment explanation
Indices: 131082--131848 Score: 390
Period size: 128 Copynumber: 6.0 Consensus size: 127
131072 TTCGTCCTTG
* * ** * *
131082 GAGA-TTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGACACCAGAGAATGCCTCATTTAAAGTC
1 GAGACTTTT-CTATCCCTTAGTCTGCCTGTCGGCTTTGAC-CTGGAGATTGCCTCTTTTAAAGTC
* ** * * * * * * *
131146 TGCTTGTCGGCTTCA-CCCCTGGAGACTTTCCTATCCCTAAGTCTGCTTGTCGGCATTCACCCTA
64 TGCCTGTCAACTTTATCCTC-GGAGACTTTCCTATCCCTAAGTCTACCTATCAGCTTTCACCCTA
* *
131210 GAGACTTTTCTATCCCTTAGTCTGTCTGTCGGCTTTGACCTTGGAGATTGCCTCTTTTAAAGCCT
1 GAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACC-TGGAGATTGCCTCTTTTAAAGTCT
* * *
131275 GCCTGTCAACTTTATCCTCGGAGACTTTCCTATCCCTAAGTCTACCTATTAGCTTTTACCCTG
65 GCCTGTCAACTTTATCCTCGGAGACTTTCCTATCCCTAAGTCTACCTATCAGCTTTCACCCTA
** * * * * * *
131338 GAGAC-TGCCTAAT---TTAAAGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCTTATCCTT--
1 GAGACTTTTCT-ATCCCTT--AGTCTGCCTGTCGGCTTTG-ACCTGGAGA-TTGCCTCT-TTTAA
* * *
131397 AGTCTGCCTGTCAAC-TT-TCCT-GGAGAC-TGCCTCAT--TTAAAGTCTACCTATCAGCTTTGA
60 AGTCTGCCTGTCAACTTTATCCTCGGAGACTTTCCT-ATCCCT-AAGTCTACCTATCAGCTTTCA
131456 CCCTA
123 CCCTA
* * * **
131461 GAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTT-ATCCCTAGAGACTTTCCTATCCCTAAAG
1 GAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGA--CCTGGAGA-TTGCCTCT-TTTAAAG
* ** * * * * * **
131524 TCTGCATGTCGGCTTTGACCCT-GGAGAC-TGCCTCAT--TTAAAATCTACCTGTCAGCTTTGTC
62 TCTGCCTGTCAACTTT-ATCCTCGGAGACTTTCCT-ATCCCT-AAGTCTACCTATCAGCTTTCAC
131585 CCTA
124 CCTA
* * * * * ** * * *
131589 AAGACATTTCTATCCCTAAGTCTACCTATTAGCTTTGACCCTAGAGACTG-CTTTATTTAAAGTC
1 GAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGA-CCTGGAGATTGCCTCT-TTTAAAGTC
* * * * ** * * * * * * * * *
131653 TACTTGTCAGCTTTGTCC-CTATAAACTTTTCTAACCCTAAGTCTGCCTGTCAACTTTGACACTG
64 TGCCTGTCAACTTTATCCTC-GGAGACTTTCCTATCCCTAAGTCTACCTATCAGCTTTCACCCTA
* * * * *
131717 GAGACTTTTCTATCTCTTAGTCTACCTATCGGCATTGACCCTAGAGATTGCCTCTTTTAAAGTCT
1 GAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGA-CCTGGAGATTGCCTCTTTTAAAGTCT
* *** * ** * * *
131782 ACCTGTTGGCTTTGTCCTTAGAGACTTTCCTATCCCTAAGTCTACCTGTCAACTTTGACCCTA
65 GCCTGTCAACTTTATCCTCGGAGACTTTCCTATCCCTAAGTCTACCTATCAGCTTTCACCCTA
131845 GAGA
1 GAGA
131849 ATGTCTCATT
Statistics
Matches: 507, Mismatches: 101, Indels: 62
0.76 0.15 0.09
Matches are distributed among these distances:
122 1 0.00
123 68 0.13
124 11 0.02
125 20 0.04
126 6 0.01
127 66 0.13
128 294 0.58
129 40 0.08
130 1 0.00
ACGTcount: A:0.20, C:0.28, G:0.16, T:0.35
Consensus pattern (127 bp):
GAGACTTTTCTATCCCTTAGTCTGCCTGTCGGCTTTGACCTGGAGATTGCCTCTTTTAAAGTCTG
CCTGTCAACTTTATCCTCGGAGACTTTCCTATCCCTAAGTCTACCTATCAGCTTTCACCCTA
Found at i:131379 original size:42 final size:42
Alignment explanation
Indices: 131015--131672 Score: 165
Period size: 42 Copynumber: 15.6 Consensus size: 42
131005 TCTATCTCTT
* * * * *
131015 AGTCTGCTTGTCAGCTTTGACCCTAGAGACTACCTCATTTAA
1 AGTCTGCCTGTCAGCTTTGTCCCTGGAGACTGCCTAATTTAA
* * * *
131057 AGTCTGCCTGTCAG-TTTCGTCCTTGGAGATTTTCCT-ATCCCT-A
1 AGTCTGCCTGTCAGCTTT-GTCCCTGGAGA-CTGCCTAAT--TTAA
* * * *
131100 AGTCTGCCTGTCAGCTTTGACACC-AGAGAATGCCTCATTTAA
1 AGTCTGCCTGTCAGCTTTGTC-CCTGGAGACTGCCTAATTTAA
* * *** * *
131142 AGTCTGCTTGTCGGCTTCACCCCTGGAGACTTTCCT-ATCCCT-A
1 AGTCTGCCTGTCAGCTTTGTCCCTGGAGAC-TGCCTAAT--TTAA
* * * ** * **
131185 AGTCTGCTTGTCGGCATTCACCCTAGAGACTTTTCT-ATCCCTT--
1 AGTCTGCCTGTCAGCTTTGTCCCTGGAGAC-TGCCTAAT---TTAA
* * * * * **
131228 AGTCTGTCTGTCGGCTTTGACCTTGGAGATTGCCTCTTTTAA
1 AGTCTGCCTGTCAGCTTTGTCCCTGGAGACTGCCTAATTTAA
* * * * *
131270 AGCCTGCCTGTCAACTTTAT-CCTCGGAGACTTTCCT-ATCCCT-A
1 AGTCTGCCTGTCAGCTTTGTCCCT-GGAGAC-TGCCTAAT--TTAA
* * *
131313 AGTCTACCTATTAGCTTT-TACCCTGGAGACTGCCTAATTTAA
1 AGTCTGCCTGTCAGCTTTGT-CCCTGGAGACTGCCTAATTTAA
* * ** *
131355 AGTCTGCCTGTCGGCTTCGTCCCTGGAGACTTTCTTATCCTT--
1 AGTCTGCCTGTCAGCTTTGTCCCTGGAGACTGCCTAAT--TTAA
* *
131397 AGTCTGCCTGTCAAC-TT-T-CCTGGAGACTGCCTCATTTAA
1 AGTCTGCCTGTCAGCTTTGTCCCTGGAGACTGCCTAATTTAA
* * * * ** **
131436 AGTCTACCTATCAGCTTTGACCCTAGAGACTTTTCTACCCTT--
1 AGTCTGCCTGTCAGCTTTGTCCCTGGAGAC-TGCCTA-ATTTAA
* * * * *
131478 AGTCTGCCTGTCGGCTTTATCCCTAGAGACTTTCCT-ATCCCTAA
1 AGTCTGCCTGTCAGCTTTGTCCCTGGAGAC-TGCCTAAT--TTAA
* * * *
131522 AGTCTGCATGTCGGCTTTGACCCTGGAGACTGCCTCATTTAA
1 AGTCTGCCTGTCAGCTTTGTCCCTGGAGACTGCCTAATTTAA
* * ** ** *
131564 AATCTACCTGTCAGCTTTGTCCCTAAAGACATTTCT-ATCCCT-A
1 AGTCTGCCTGTCAGCTTTGTCCCTGGAGAC-TGCCTAAT--TTAA
* * * * * * *
131607 AGTCTACCTATTAGCTTTGACCCTAGAGACTGCTTTATTTAA
1 AGTCTGCCTGTCAGCTTTGTCCCTGGAGACTGCCTAATTTAA
* *
131649 AGTCTACTTGTCAGCTTTGTCCCT
1 AGTCTGCCTGTCAGCTTTGTCCCT
131673 ATAAACTTTT
Statistics
Matches: 453, Mismatches: 119, Indels: 88
0.69 0.18 0.13
Matches are distributed among these distances:
37 2 0.00
39 26 0.06
40 5 0.01
41 11 0.02
42 210 0.46
43 153 0.34
44 46 0.10
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.35
Consensus pattern (42 bp):
AGTCTGCCTGTCAGCTTTGTCCCTGGAGACTGCCTAATTTAA
Found at i:132174 original size:128 final size:128
Alignment explanation
Indices: 131776--132185 Score: 507
Period size: 128 Copynumber: 3.2 Consensus size: 128
131766 GCCTCTTTTA
** * ** * * **
131776 AAGTCTACCTGTTGGCTTTGTCCTTAGAGACTTTCCTATCCCTAAGTCTACCTGTCAACTTTGAC
1 AAGTCTACCTGTCAGCTTTGACCTTAGAGACTTTTTTATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * * * *
131841 CCTAGAGAATGTCTCATTTAAAGTCTGTCTATCGGCTTTATCCCTGGAGACTTTCCTATCCCT
66 CCTAGAGACTGCCTCATTTAAAGTCTGTCTATCGGCTTTGTCCCTAGAAACTTTCCTATCCCT
* * * *
131904 AAGTCTGCCTGTCGGCTTTGACCTTTGAGACTTTTTTATCCCTTAGTCTGCTTGTCGGCTTTGAC
1 AAGTCTACCTGTCAGCTTTGACCTTAGAGACTTTTTTATCCCTTAGTCTGCCTGTCGGCTTTGAC
* * * * * * *
131969 CCTAGAGACTACTTCATTTAAAGTCTATCTGTCTGCATCGTCCCTAGAAACTTTCCTATCCCT
66 CCTAGAGACTGCCTCATTTAAAGTCTGTCTATCGGCTTTGTCCCTAGAAACTTTCCTATCCCT
** *
132032 AAGT-TTGCTGGTCAGCTTTGACCTTAGAGACTTTTTTATCCCTTAGTCTGCCTGTCGGCTTTAA
1 AAGTCTACCT-GTCAGCTTTGACCTTAGAGACTTTTTTATCCCTTAGTCTGCCTGTCGGCTTTGA
* * *
132096 CCCTGGAGACTGCCTCATTTAAAGTCTGCCTATCGGCTTTGTCCCTAGAAACTTTCCTATCCGT
65 CCCTAGAGACTGCCTCATTTAAAGTCTGTCTATCGGCTTTGTCCCTAGAAACTTTCCTATCCCT
* *
132160 AAGTCTACCTGTCAGCATTAACCTTA
1 AAGTCTACCTGTCAGCTTTGACCTTA
132186 AAGATTGCCC
Statistics
Matches: 237, Mismatches: 43, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
127 3 0.01
128 231 0.97
129 3 0.01
ACGTcount: A:0.20, C:0.27, G:0.17, T:0.37
Consensus pattern (128 bp):
AAGTCTACCTGTCAGCTTTGACCTTAGAGACTTTTTTATCCCTTAGTCTGCCTGTCGGCTTTGAC
CCTAGAGACTGCCTCATTTAAAGTCTGTCTATCGGCTTTGTCCCTAGAAACTTTCCTATCCCT
Found at i:132249 original size:128 final size:128
Alignment explanation
Indices: 132117--132395 Score: 321
Period size: 128 Copynumber: 2.2 Consensus size: 128
132107 GCCTCATTTA
* * *
132117 AAGTCTGCCTATCGGCTTTGTCCCTAGAAACTTTCCTATCCGTAAGTCTACCTGTCAGCATTAAC
1 AAGTCTGCCTATCGGCTTTGACCCTAGAAACTTTCCTATCCATAAGTCTACCTATCAGCATTAAC
* *
132182 CTTA-AAGATTGCCCCATTTAAAGTCTGCCTAT-GAGCTTCGTCCCTGGACACTTT-TCGATCCC
66 CCTAGAA-ACTGCCCCATTTAAAGTCTGCCTATAG-GCTTCGTCCCTGGACACTTTCT-GATCCC
132244 T
128 T
* * * * * * * *
132245 AAGTCTGCCTATCGACTTTGACCCTTGAGACTTTTCTATCCATTAGTCTACTTATCAGCTTTGAC
1 AAGTCTGCCTATCGGCTTTGACCCTAGAAACTTTCCTATCCATAAGTCTACCTATCAGCATTAAC
* * * * * *
132310 CCTAGAAACTGTCTCATTTAAAGTCTGCCTATAGGCTTTGTCCTTGGAGACTTTCTTATCCCT
66 CCTAGAAACTGCCCCATTTAAAGTCTGCCTATAGGCTTCGTCCCTGGACACTTTCTGATCCCT
* *
132373 AAGTCTACCTGTCGGCTTTGACC
1 AAGTCTGCCTATCGGCTTTGACC
132396 TTGGAGACTA
Statistics
Matches: 126, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
128 122 0.97
129 4 0.03
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (128 bp):
AAGTCTGCCTATCGGCTTTGACCCTAGAAACTTTCCTATCCATAAGTCTACCTATCAGCATTAAC
CCTAGAAACTGCCCCATTTAAAGTCTGCCTATAGGCTTCGTCCCTGGACACTTTCTGATCCCT
Found at i:132462 original size:128 final size:127
Alignment explanation
Indices: 132330--132678 Score: 407
Period size: 128 Copynumber: 2.7 Consensus size: 127
132320 GTCTCATTTA
* * *
132330 AAGTCTGCCTATAGGCTTTGTCCTTGGAGAC-TTTCTTATCCCTAAGTCTACCTGTCGGCTTTGA
1 AAGTCTGCCTGTAGGCTTTGACCTTGGAGACTTTTC-TATCCCTAAGTCTGCCTGTCGGCTTTGA
* *
132394 CCTTGGAGACTACCTCATTTAAAGTCTGCCTACCCAC-TTCATCCGTGGAGACTTTCCTATCCCT
65 CCCTGGAGACTGCCTCATTTAAAGTCTGCCTACCCACTTTCA-CCGTGGAGACTTTCCTA-CCCT
* * * * * **
132458 AAGTCTGCCTGTTGGCTTTGACCATGGAGACTTTTCTATCCCTTAGTTTGCCTATCAACTTTGAC
1 AAGTCTGCCTGTAGGCTTTGACCTTGGAGACTTTTCTATCCCTAAGTCTGCCTGTCGGCTTTGAC
* ** ** * *
132523 CCTGGAGACTGCCTCATTTAAAGTCTGCTTGTCGGCTTTCACCTTGGAGACTTTTCTACCCT
66 CCTGGAGACTGCCTCATTTAAAGTCTGCCTACCCACTTTCACCGTGGAGACTTTCCTACCCT
* * * * * *
132585 TAGTCTGCCTGTCGACTTTCACCTTGGAGACTTTTCTA-CCCAAAGACTGCCTGTCGGCTTTGAC
1 AAGTCTGCCTGTAGGCTTTGACCTTGGAGACTTTTCTATCCCTAAGTCTGCCTGTCGGCTTTGAC
* *
132649 CCTGGAGACTGCCTCATCTAAAGTTTGCCT
66 CCTGGAGACTGCCTCATTTAAAGTCTGCCT
132679 GTTGGCTTTG
Statistics
Matches: 185, Mismatches: 34, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
126 46 0.25
127 37 0.20
128 94 0.51
129 8 0.04
ACGTcount: A:0.18, C:0.29, G:0.19, T:0.35
Consensus pattern (127 bp):
AAGTCTGCCTGTAGGCTTTGACCTTGGAGACTTTTCTATCCCTAAGTCTGCCTGTCGGCTTTGAC
CCTGGAGACTGCCTCATTTAAAGTCTGCCTACCCACTTTCACCGTGGAGACTTTCCTACCCT
Found at i:132590 original size:42 final size:42
Alignment explanation
Indices: 130608--132658 Score: 409
Period size: 43 Copynumber: 48.3 Consensus size: 42
130598 CCGGCTTCAT
* * *
130608 CCCTGGAGACTTTCCTATCCCTAAATCTGCCTGTCGGCTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* * * ** *
130651 CCCTGGAGACTTTTTTATCTCTTAGTCTGTCTGTCAACTTTAA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* ** ** * * * * * *
130694 CCCTAGAGAC-TGCCT-CATTTAAAGTTTACCTATCAGCTTCGT
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* * * * *
130736 CCTTGGAGA-TTTTCCTATCTCTAAGTCTGCTTGTCAGCTTTGA
1 CCCTGGAGACTTTT-CTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* * *
130779 CCTTGGAGACTTTTCTATCTCTTAGTCTGCCTATCGGCTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* ** ** * * *
130822 CCCTAGAGA-TTACCT-CATTTAAAGTTTGCTTGTCGGCTTTGT
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* * ** * ** * *
130864 CCTTGGAGACTTTCCTATGCTTACGTCTACCTACCAGCTTTCA
1 CCCTGGAGACTTTTCTACCCTTA-GTCTGCCTGTCGGCTTTGA
* * ** ** * * * * *
130907 CACTAGCA-AC-TGCCT-CATTTAAAGTCTACTTGTCGACTTCGT
1 CCCT-GGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* * * * *
130949 CCGTGGAGACTTTCCTATCCCTAAGTCTACCTGTTGGCTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* * * * *
130992 CCTTGTAGACTTTTCTATCTCTTAGTCTGCTTGTCAGCTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* ** ** * *
131035 CCCTAGAGAC-TACCT-CATTTAAAGTCTGCCTGTCAG-TTTCGT
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTT-GA
* * *
131077 CCTTGGAGA-TTTTCCTATCCCTAAGTCTGCCTGTCAGCTTTGA
1 CCCTGGAGACTTTT-CTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* * ** ** * *
131120 CACC-AGAGA-ATGCCT-CATTTAAAGTCTGCTTGTCGGC-TTCA
1 C-CCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* * * * *
131161 CCCCTGGAGACTTTCCTATCCCTAAGTCTGCTTGTCGGCATTCA
1 -CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* *
131205 CCCTAGAGACTTTTCTATCCCTTAGTCTGTCTGTCGGCTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* ** ** * **
131248 CCTTGGAGA-TTGCCT-CTTTTAAAGCCTGCCTGTCAACTTT-A
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* * * * * ** *
131289 TCCTCGGAGACTTTCCTATCCCTAAGTCTACCTATTAGCTTTTA
1 CCCT-GGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
** ** * *
131333 CCCTGGAGAC-TGCCTA-ATTTAAAGTCTGCCTGTCGGCTTCGT
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* **
131375 CCCTGGAGAC-TTTCTTATCCTTAGTCTGCCTGTCAACTTT--
1 CCCTGGAGACTTTTC-TACCCTTAGTCTGCCTGTCGGCTTTGA
** ** * * *
131415 -CCTGGAGAC-TGCCT-CATTTAAAGTCTACCTATCAGCTTTGA
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
*
131456 CCCTAGAGACTTTTCTACCCTTAGTCTGCCTGTCGGCTTT-A
1 CCCTGGAGACTTTTCTACCCTTAGTCTGCCTGTCGGCTTTGA
* * * *
131497 TCCCTAGAGACTTTCCTATCCCTAAAGTCTGCATGTCGGCTTTGA
1 -CCCTGGAGACTTTTCTA-CCCT-TAGTCTGCCTGTCGGCTTTGA
** ** * * * *
131542 CCCTGGAGAC-TGCCT-CATTTAAAATCTACCTGTCAGCTTTGT
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
** * * * * **
131584 CCCTAAAGACATTTCTATCCCTAAGTCTACCTATTAGCTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* * * * * * *
131627 CCCTAGAGACTGCTT-TA--TTTAAAGTCTACTTGTCAGCTTTGT
1 CCCTGGAGACT-TTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
** * * **
131669 CCCTATAAACTTTTCTAACCCTAAGTCTGCCTGTCAACTTTGA
1 CCCTGGAGACTTTTCT-ACCCTTAGTCTGCCTGTCGGCTTTGA
* * * * *
131712 CACTGGAGACTTTTCTATCTCTTAGTCTACCTATCGGCATTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* ** ** * * *
131755 CCCTAGAGA-TTGCCT-CTTTTAAAGTCTACCTGTTGGCTTTGT
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* * * * * **
131797 CCTTAGAGACTTTCCTATCCCTAAGTCTACCTGTCAACTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* * * ** * *
131840 CCCTAGAGA-ATGTCT-CATTTAAAGTCTGTCTATCGGCTTT-A
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* *
131881 TCCCTGGAGACTTTCCTATCCCTAAGTCTGCCTGTCGGCTTTGA
1 -CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* * * *
131925 CCTTTGAGACTTTTTTATCCCTTAGTCTGCTTGTCGGCTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* * * ** * * * *
131968 CCCTAGAGACTACTTC-A--TTTAAAGTCTATCTGTCTGCATCGT
1 CCCTGGAGACT-TTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* * * * * *
132010 CCCTAGAAACTTTCCTATCCCTAAGTTTG-CTGGTCAGCTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCT-GTCGGCTTTGA
* * * *
132053 CCTTAGAGACTTTTTTATCCCTTAGTCTGCCTGTCGGCTTTAA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
** ** * *
132096 CCCTGGAGAC-TGCCT-CATTTAAAGTCTGCCTATCGGCTTTGT
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* * * * * * * * *
132138 CCCTAGAAACTTTCCTATCCGTAAGTCTACCTGTCAGCATTAA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* ** * * * *
132181 CCTTAAAGA--TTGC--CCCATTTAAAGTCTGCCTAT-GAGCTTCGT
1 CCCTGGAGACTTTTCTACCC--TT--AGTCTGCCTGTCG-GCTTTGA
* * * * *
132223 CCCTGGACACTTTTCGATCCCTAAGTCTGCCTATCGACTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* * * * * *
132266 CCCTTGAGACTTTTCTATCCATTAGTCTACTTATCAGCTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* * * ** * * *
132309 CCCTAGAAAC-TGTCT-CATTTAAAGTCTGCCTATAGGCTTTGT
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* * *
132351 CCTTGGAGAC-TTTCTTATCCCTAAGTCTACCTGTCGGCTTTGA
1 CCCTGGAGACTTTTC-TA-CCCTTAGTCTGCCTGTCGGCTTTGA
* ** ** ** ** *
132394 CCTTGGAGAC-TACCT-CATTTAAAGTCTGCCTACCCAC-TTCA
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* * * *
132435 TCCGTGGAGACTTTCCTATCCCTAAGTCTGCCTGTTGGCTTTGA
1 -CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
* * * **
132479 CCATGGAGACTTTTCTATCCCTTAGTTTGCCTATCAACTTTGA
1 CCCTGGAGACTTTTCTA-CCCTTAGTCTGCCTGTCGGCTTTGA
** ** * *
132522 CCCTGGAGAC-TGCCT-CATTTAAAGTCTGCTTGTCGGCTTTCA
1 CCCTGGAGACTTTTCTACCCTT--AGTCTGCCTGTCGGCTTTGA
* * *
132564 CCTTGGAGACTTTTCTACCCTTAGTCTGCCTGTCGACTTTCA
1 CCCTGGAGACTTTTCTACCCTTAGTCTGCCTGTCGGCTTTGA
* ** *
132606 CCTTGGAGACTTTTCTACCCAAAGACTGCCTGTCGGCTTTGA
1 CCCTGGAGACTTTTCTACCCTTAGTCTGCCTGTCGGCTTTGA
132648 CCCTGGAGACT
1 CCCTGGAGACT
132659 GCCTCATCTA
Statistics
Matches: 1430, Mismatches: 454, Indels: 249
0.67 0.21 0.12
Matches are distributed among these distances:
37 2 0.00
38 3 0.00
39 26 0.02
40 36 0.03
41 29 0.02
42 533 0.37
43 704 0.49
44 68 0.05
45 26 0.02
47 3 0.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (42 bp):
CCCTGGAGACTTTTCTACCCTTAGTCTGCCTGTCGGCTTTGA
Found at i:132640 original size:84 final size:85
Alignment explanation
Indices: 131157--132658 Score: 274
Period size: 85 Copynumber: 17.7 Consensus size: 85
131147 GCTTGTCGGC
* * * * * *
131157 TTCACCCCTGGAGACTTTCCTATCCCTAAGTCTGCTTGTCGGCATTCACCCTAGAGACTTTTCTA
1 TTCA-CCCTGGAGACTTTCCTA-CCCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACTTTTCTA
* * **
131222 TCCCTTAGTCTGTCTGTCGGCT
64 TCCCTTAGTCTGCCTATCAACT
* * * ** * ** *
131244 TTGACCTTGGAGA-TTGCCT-CTTTTAAAGCCTGCCTGTCAACTTT-ATCC-TCGGAGACTTTCC
1 TTCACCCTGGAGACTTTCCTAC--CCAAAGTCTGCCTGTCGGCTTTGA-CCAT-GGAGACTTTTC
* * * *
131305 TATCCCTAAGTCTACCTATTAGCT
62 TATCCCTTAGTCTGCCTATCAACT
* * *** * * *
131329 TTTACCCTGGAGAC-TGCCTAATTTAAAGTCTGCCTGTCGGCTTCGTCCCTGGAGAC-TTTCTTA
1 TTCACCCTGGAGACTTTCCT-ACCCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACTTTTC-TA
*
131392 T-CCTTAGTCTGCCTGTCAACT
64 TCCCTTAGTCTGCCTATCAACT
* *** * * * * *
131413 TT---CCTGGAGAC-TGCCTCATTTAAAGTCTACCTATCAGCTTTGACCCTAGAGACTTTTCTA-
1 TTCACCCTGGAGACTTTCCT-ACCCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACTTTTCTAT
* **
131473 CCCTTAGTCTGCCTGTCGGCT
65 CCCTTAGTCTGCCTATCAACT
* * * **
131494 TT-ATCCCTAGAGACTTTCCTATCCCTAAAGTCTGCATGTCGGCTTTGACCCTGGAGAC-TGCCT
1 TTCA-CCCTGGAGACTTTCCTA-CCC-AAAGTCTGCCTGTCGGCTTTGACCATGGAGACTTTTCT
* * * *
131557 CAT---TTAAAATCTACCTGTCAGCT
63 -ATCCCTT--AGTCTGCCTATCAACT
** ** * * * ** * * *
131580 TTGTCCCTAAAGACATTT-CTATCCCTAAGTCTACCTATTAGCTTTGACCCTAGAGACTGCTT-T
1 TTCACCCTGGAGAC-TTTCCTA-CCCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACT-TTTCT
* * * *
131643 AT---TTAAAGTCTACTTGTCAGCT
63 ATCCCTT--AGTCTGCCTATCAACT
** ** * * * **
131665 TTGTCCCTATAAACTTTTCTAACCCTAAGTCTGCCTGTCAACTTTGA-CACTGGAGACTTTTCTA
1 TTCACCCTGGAGACTTTCCT-ACCCAAAGTCTGCCTGTCGGCTTTGACCA-TGGAGACTTTTCTA
* * ** *
131729 TCTCTTAGTCTACCTATCGGCA
64 TCCCTTAGTCTGCCTATCAACT
* * * ** * * * * * *
131751 TTGACCCTAGAGA-TTGCCT-CTTTTAAAGTCTACCTGTTGGCTTTGTCCTTAGAGACTTTCCTA
1 TTCACCCTGGAGACTTTCCTAC--CCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACTTTTCTA
* * *
131814 TCCCTAAGTCTACCTGTCAACT
64 TCCCTTAGTCTGCCTATCAACT
* * * * *** * * * *
131836 TTGACCCTAGAGAATGT-CTCATTTAAAGTCTGTCTATCGGCTTT-ATCCCTGGAGACTTTCCTA
1 TTCACCCTGGAGACTTTCCT-ACCCAAAGTCTGCCTGTCGGCTTTGA-CCATGGAGACTTTTCTA
* * **
131899 TCCCTAAGTCTGCCTGTCGGCT
64 TCCCTTAGTCTGCCTATCAACT
* * * ** ** * * * *
131921 TTGACCTTTGAGACTTTTTTATCCCTTAGTCTGCTTGTCGGCTTTGACCCTAGAGACTACTTC-A
1 TTCACCCTGGAGACTTTCCTA-CCCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACT-TTTCTA
** * **
131985 T---TTAAAGTCTATCTGTCTGC-
64 TCCCTT--AGTCTGCCTATCAACT
* * * * * * * * * *
132005 ATCGTCCCTAGAAACTTTCCTATCCCTAAGTTTG-CTGGTCAGCTTTGACCTTAGAGACTTTTTT
1 TTC-ACCCTGGAGACTTTCCTA-CCCAAAGTCTGCCT-GTCGGCTTTGACCATGGAGACTTTTCT
* **
132069 ATCCCTTAGTCTGCCTGTCGGCT
63 ATCCCTTAGTCTGCCTATCAACT
* * *** * * * * * *
132092 TTAACCCTGGAGAC-TGCCTCATTTAAAGTCTGCCTATCGGCTTTGTCCCTAGAAACTTTCCTAT
1 TTCACCCTGGAGACTTTCCT-ACCCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACTTTTCTAT
* * * * * *
132156 CCGTAAGTCTACCTGTCAGCA
65 CCCTTAGTCTGCCTATCAACT
* * ** * * *** * * * * * *
132177 TTAACCTTAAAGA-TTGCCCCATTTAAAGTCTGCCTAT-GAGCTTCGTCCCTGGACACTTTTCGA
1 TTCACCCTGGAGACTT-TCCTACCCAAAGTCTGCCTGTCG-GCTTTGACCATGGAGACTTTTCTA
* *
132240 TCCCTAAGTCTGCCTATCGACT
64 TCCCTTAGTCTGCCTATCAACT
* * * * * * * * * * * * *
132262 TTGACCCTTGAGACTTTTCTATCCATTAGTCTACTTATCAGCTTTGACCCTAGAAAC-TGTCTCA
1 TTCACCCTGGAGACTTTCCTACCCA-AAGTCTGCCTGTCGGCTTTGACCATGGAGACTTTTCT-A
*
132326 T---TTAAAGTCTGCCTAT-AGGCT
64 TCCCTT--AGTCTGCCTATCA-ACT
** * * * * * **
132347 TTGTCCTTGGAGACTTTCTTATCCCTAAGTCTACCTGTCGGCTTTGACCTTGGAGAC-TACCTCA
1 TTCACCCTGGAGACTTTCCTA-CCCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACTTTTCT-A
* *
132411 T---TTAAAGTCTGCCTACCCAC-
64 TCCCTT--AGTCTGCCTATCAACT
* * *
132431 TTCATCCGTGGAGACTTTCCTATCCCTAAGTCTGCCTGTTGGCTTTGACCATGGAGACTTTTCTA
1 TTCA-CCCTGGAGACTTTCCTA-CCCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACTTTTCTA
*
132496 TCCCTTAGTTTGCCTATCAACT
64 TCCCTTAGTCTGCCTATCAACT
* * *** * * *
132518 TTGACCCTGGAGAC-TGCCTCATTTAAAGTCTGCTTGTCGGCTTTCACCTTGGAGACTTTTCTA-
1 TTCACCCTGGAGACTTTCCT-ACCCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACTTTTCTAT
* *
132581 CCCTTAGTCTGCCTGTCGACT
65 CCCTTAGTCTGCCTATCAACT
* * * *
132602 TTCACCTTGGAGACTTTTCTACCCAAAGACTGCCTGTCGGCTTTGACCCTGGAGACT
1 TTCACCCTGGAGACTTTCCTACCCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACT
132659 GCCTCATCTA
Statistics
Matches: 1066, Mismatches: 274, Indels: 153
0.71 0.18 0.10
Matches are distributed among these distances:
81 66 0.06
82 4 0.00
83 4 0.00
84 106 0.10
85 667 0.63
86 200 0.19
87 13 0.01
88 6 0.01
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.36
Consensus pattern (85 bp):
TTCACCCTGGAGACTTTCCTACCCAAAGTCTGCCTGTCGGCTTTGACCATGGAGACTTTTCTATC
CCTTAGTCTGCCTATCAACT
Found at i:132678 original size:42 final size:42
Alignment explanation
Indices: 130338--132690 Score: 240
Period size: 43 Copynumber: 55.4 Consensus size: 42
130328 TCCCTTAGTG
* * **
130338 TGCCTGTCAGCTTTGACCCTAGAGACTACCT-TATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * **
130380 TCCCTGTCAGCTTTGACCTTGGAGACTGCCT-TATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * ** * * * *
130422 TGTCTATTGAATTTGTCCATGGAGACTTTCCTATCCCT-AAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGAC--TCCTCTACCTAAAGTC
* * **
130465 TACCTGTCGGCTTTGACCCTGGAGATTCCCTCT-TTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * * * * * *
130507 TGCTTATCGGATTTGTCCATAGAGACTTTCCTATCCCT-AAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGAC--TCCTCTACCTAAAGTC
* * * * * * * *
130550 TACTTGTCTGCCTTGACCTTTGAGGCTGCCTC-ACTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * * *
130592 TGCTTGCCGGC-TTCATCCCTGGAGACTTTCCTATCCCTAAA-TC
1 TGCCTGTCGGCTTTGA-CCCTGGAGAC--TCCTCTACCTAAAGTC
** * *
130635 TGCCTGTCGGCTTTGACCCTGGAGACTTTTTTATCTCT-TAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTA-C-CTAAAGTC
* ** * * ** *
130678 TGTCTGTCAACTTTAACCCTAGAGACTGCCTC-ATTTAAAGTT
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * * * * **
130720 TACCTATCAGCTTCGTCCTTGGAGA-TTTTCCTATCTCT-AAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCT-CTA-C-CTAAAGTC
* * * ** *
130763 TGCTTGTCAGCTTTGACCTTGGAGACTTTTCTATCTCT-TAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTA-C-CTAAAGTC
* * * ** *
130806 TGCCTATCGGCTTTGACCCTAGAGATTACCTC-ATTTAAAGTT
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * * * * *
130848 TGCTTGTCGGCTTTGTCCTTGGAGACT-TTCCTATGCTTACGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCT-CTA-CCTAAAGTC
* ** * * * * **
130891 TACCTACCAGCTTTCACACTAGCA-ACTGCCTC-ATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCT-GGAGACT-CCTCTACCTAAAGTC
* * * * * * * *
130933 TACTTGTCGACTTCGTCCGTGGAGACTTTCCTATCCCT-AAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGAC--TCCTCTACCTAAAGTC
* * * * ** *
130976 TACCTGTTGGCTTTGACCTTGTAGACTTTTCTATCTCT-TAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTA-C-CTAAAGTC
* * * **
131019 TGCTTGTCAGCTTTGACCCTAGAGACTACCTC-ATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * * * *
131061 TGCCTGTCAG-TTTCGTCCTTGGAGATTTTCCTATCCCT-AAGTC
1 TGCCTGTCGGCTTT-GACCCTGGAGA--CTCCTCTACCTAAAGTC
* * * **
131104 TGCCTGTCAGCTTTGACACC-AGAGAATGCCTC-ATTTAAAGTC
1 TGCCTGTCGGCTTTGAC-CCTGGAGACT-CCTCTACCTAAAGTC
* * * *
131146 TGCTTGTCGGC-TTCACCCCTGGAGACTTTCCTATCCCT-AAGTC
1 TGCCTGTCGGCTTTGA-CCCTGGAGAC--TCCTCTACCTAAAGTC
* * * * ** *
131189 TGCTTGTCGGCATTCACCCTAGAGACTTTTCTATCCCT-TAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTA--CCTAAAGTC
* * * ** *
131232 TGTCTGTCGGCTTTGACCTTGGAGATTGCCTCT-TTTAAAGCC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
** * * *
131274 TGCCTGTCAACTTT-ATCCTCGGAGACTTTCCTATCCCT-AAGTC
1 TGCCTGTCGGCTTTGACCCT-GGAGAC--TCCTCTACCTAAAGTC
* * ** * * **
131317 TACCTATTAGCTTTTACCCTGGAGACTGCCT-AATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * *
131359 TGCCTGTCGGCTTCGTCCCTGGAGACT-TTCTTATCCT-TAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTC-TA-CCTAAAGTC
** **
131401 TGCCTGTCAACTTT---CCTGGAGACTGCCTC-ATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * * ** *
131440 TACCTATCAGCTTTGACCCTAGAGACTTTTCTACCCT-TAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTA-CCTAAAGTC
* * *
131482 TGCCTGTCGGCTTT-ATCCCTAGAGACTTTCCTATCCCTAAAGTC
1 TGCCTGTCGGCTTTGA-CCCTGGAGAC--TCCTCTACCTAAAGTC
* ** *
131526 TGCATGTCGGCTTTGACCCTGGAGACTGCCTC-ATTTAAAATC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * ** *
131568 TACCTGTCAGCTTTGTCCCTAAAGACAT-TTCTATCCCT-AAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGAC-TCCTCTA--CCTAAAGTC
* * ** * * * **
131611 TACCTATTAGCTTTGACCCTAGAGACTGCTTTATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTACCTAAAGTC
* * * * ** * **
131653 TACTTGTCAGCTTTGTCCCTATAAACTTTTCTAACCCT-AAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCT-A-CCTAAAGTC
** * ** *
131696 TGCCTGTCAACTTTGACACTGGAGACTTTTCTATCTCT-TAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTA-C-CTAAAGTC
* * * * * **
131739 TACCTATCGGCATTGACCCTAGAGATTGCCTCT-TTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * * * * *
131781 TACCTGTTGGCTTTGTCCTTAGAGACTTTCCTATCCCT-AAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGAC--TCCTCTACCTAAAGTC
* ** * * * **
131824 TACCTGTCAACTTTGACCCTAGAGAAT-GTCTCATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCT-ACCTAAAGTC
* * * *
131866 TGTCTATCGGCTTT-ATCCCTGGAGACTTTCCTATCCCT-AAGTC
1 TGCCTGTCGGCTTTGA-CCCTGGAGAC--TCCTCTACCTAAAGTC
* * ** * *
131909 TGCCTGTCGGCTTTGACCTTTGAGACTTTTTTATCCCT-TAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTA--CCTAAAGTC
* * * **
131952 TGCTTGTCGGCTTTGACCCTAGAGACTACT-TCATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCT-ACCTAAAGTC
** * * * * * * * * *
131994 TATCTGTCTGCATCGTCCCTAGAAACTTTCCTATCCCT-AAGTT
1 TGCCTGTCGGCTTTGACCCTGGAGAC--TCCTCTACCTAAAGTC
* * * ** * *
132037 TG-CTGGTCAGCTTTGACCTTAGAGACTTTTTTATCCCT-TAGTC
1 TGCCT-GTCGGCTTTGACCCTGGAGACTCCTCTA--CCTAAAGTC
* **
132080 TGCCTGTCGGCTTTAACCCTGGAGACTGCCTC-ATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * * *
132122 TGCCTATCGGCTTTGTCCCTAGAAACT-TTCCTATCCGT-AAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCT-CTA-CC-TAAAGTC
* * * * * ** * * **
132165 TACCTGTCAGCATTAACCTTAAAGATTGCC-CCATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * * ** *
132207 TGCCTAT-GAGCTTCGTCCCTGGACACTTTTCGATCCCT-AAGTC
1 TGCCTGTCG-GCTTTGACCCTGGAGACTCCTC--TACCTAAAGTC
* * * ** *
132250 TGCCTATCGACTTTGACCCTTGAGACTTTTCTATCC-ATTAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTA-CCTA-AAGTC
* * * * * * * **
132293 TACTTATCAGCTTTGACCCTAGAAACT-GTCTCATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCT-ACCTAAAGTC
* * * * *
132335 TGCCTATAGGCTTTGTCCTTGGAGACT-TTCTTATCCCT-AAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTC-TA--CCTAAAGTC
* * **
132378 TACCTGTCGGCTTTGACCTTGGAGACTACCTC-ATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
** ** * * * *
132420 TGCCTACCCAC-TTCATCCGTGGAGACTTTCCTATCCCT-AAGTC
1 TGCCTGTCGGCTTTGA-CCCTGGAGAC--TCCTCTACCTAAAGTC
* * ** * *
132463 TGCCTGTTGGCTTTGACCATGGAGACTTTTCTATCCCT-TAGTT
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTA--CCTAAAGTC
* ** **
132506 TGCCTATCAACTTTGACCCTGGAGACTGCCTC-ATTTAAAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
* * * ** *
132548 TGCTTGTCGGCTTTCACCTTGGAGACTTTTCTACCCT-TAGTC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTA-CCTAAAGTC
* * * ** * *
132590 TGCCTGTCGACTTTCACCTTGGAGACTTTTCTACCCAAAGAC
1 TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTACCTAAAGTC
* *
132632 TGCCTGTCGGCTTTGACCCTGGAGACTGCCTC-ATCTAAAGTT
1 TGCCTGTCGGCTTTGACCCTGGAGACT-CCTCTACCTAAAGTC
*
132674 TGCCTGTTGGCTTTGAC
1 TGCCTGTCGGCTTTGAC
132691 TCGAGAGAAT
Statistics
Matches: 1599, Mismatches: 559, Indels: 306
0.65 0.23 0.12
Matches are distributed among these distances:
38 1 0.00
39 26 0.02
40 6 0.00
41 76 0.05
42 648 0.41
43 728 0.46
44 107 0.07
45 7 0.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (42 bp):
TGCCTGTCGGCTTTGACCCTGGAGACTCCTCTACCTAAAGTC
Found at i:133194 original size:7 final size:7
Alignment explanation
Indices: 133184--133221 Score: 60
Period size: 7 Copynumber: 5.4 Consensus size: 7
133174 GAAAATTAAA
133184 AAATAAT
1 AAATAAT
133191 AAATAAT
1 AAATAAT
133198 AAATAAT
1 AAATAAT
133205 AAA-AAT
1 AAATAAT
133211 CAAATAAT
1 -AAATAAT
133219 AAA
1 AAA
133222 ATAAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 3 0.10
7 23 0.79
8 3 0.10
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (7 bp):
AAATAAT
Found at i:133217 original size:21 final size:22
Alignment explanation
Indices: 133175--133231 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
133165 GTAGAAATCG
133175 AAAATTAAAAAATAAT-AAATAAT
1 AAAA-TAAAAAA-AATCAAATAAT
*
133198 -AAATAATAAAAATCAAATAAT
1 AAAATAAAAAAAATCAAATAAT
133219 AAAATAAAAAAAA
1 AAAATAAAAAAAA
133232 ATCATGAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
20 3 0.10
21 13 0.43
22 14 0.47
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (22 bp):
AAAATAAAAAAAATCAAATAAT
Found at i:133866 original size:30 final size:30
Alignment explanation
Indices: 133832--134021 Score: 123
Period size: 30 Copynumber: 6.6 Consensus size: 30
133822 AACCAGCATG
133832 AACAGCAGCTCCAACAAGCACAGA-AGAAAC
1 AACAGCAGCTCCAACAAGCAC-GACAGAAAC
* * *
133862 AACAGCAGTTCCAATAAGCACGACAGCAAC
1 AACAGCAGCTCCAACAAGCACGACAGAAAC
* *
133892 AGCAGCAGCTCCAACAAG--C-A-TG----
1 AACAGCAGCTCCAACAAGCACGACAGAAAC
* * * *
133914 AATAGCATCTCCAACAAGCATGACAGTAAC
1 AACAGCAGCTCCAACAAGCACGACAGAAAC
* * * *
133944 AATAACAGCTCCAACAAGCAAGACAGCAAC
1 AACAGCAGCTCCAACAAGCACGACAGAAAC
** * *
133974 AACAGCAGCTTTAACAAGCACGGCA-ACAAA
1 AACAGCAGCTCCAACAAGCACGACAGA-AAC
134004 AACTA-CAGCTCCAACAAG
1 AAC-AGCAGCTCCAACAAG
134022 TACAAACAGC
Statistics
Matches: 123, Mismatches: 26, Indels: 22
0.72 0.15 0.13
Matches are distributed among these distances:
22 15 0.12
25 1 0.01
26 2 0.02
27 1 0.01
28 1 0.01
29 2 0.02
30 100 0.81
31 1 0.01
ACGTcount: A:0.45, C:0.29, G:0.16, T:0.09
Consensus pattern (30 bp):
AACAGCAGCTCCAACAAGCACGACAGAAAC
Found at i:133920 original size:22 final size:22
Alignment explanation
Indices: 133895--133936 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
133885 CAGCAACAGC
133895 AGCAGCTCCAACAAGCATGAAT
1 AGCAGCTCCAACAAGCATGAAT
*
133917 AGCATCTCCAACAAGCATGA
1 AGCAGCTCCAACAAGCATGA
133937 CAGTAACAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.29, G:0.17, T:0.14
Consensus pattern (22 bp):
AGCAGCTCCAACAAGCATGAAT
Found at i:133926 original size:82 final size:82
Alignment explanation
Indices: 133782--133993 Score: 239
Period size: 82 Copynumber: 2.6 Consensus size: 82
133772 AAGCACGAAT
* ** *
133782 AACAGCTCCAACAAGCATAG-TAGCAACAAGCAATAGCTCCAACCAGCATGAACAGCAGCTCCAA
1 AACAGCTCCAACAAGCA-AGACAGCAACAA-CAGCAGCTCCAACAAGCATGAACAGCAGCTCCAA
133846 CAAGCACAGA-AGAAACAAC
64 CAAGCA-AGACAGAAACAAC
* * * * * * *
133865 AGCAGTTCCAATAAGCACGACAGCAACAGCAGCAGCTCCAACAAGCATGAATAGCATCTCCAACA
1 AACAGCTCCAACAAGCAAGACAGCAACAACAGCAGCTCCAACAAGCATGAACAGCAGCTCCAACA
* * *
133930 AGCATGACAGTAACAAT
66 AGCAAGACAGAAACAAC
**
133947 AACAGCTCCAACAAGCAAGACAGCAACAACAGCAGCTTTAACAAGCA
1 AACAGCTCCAACAAGCAAGACAGCAACAACAGCAGCTCCAACAAGCA
133994 CGGCAACAAA
Statistics
Matches: 106, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
81 2 0.02
82 83 0.78
83 21 0.20
ACGTcount: A:0.44, C:0.29, G:0.16, T:0.10
Consensus pattern (82 bp):
AACAGCTCCAACAAGCAAGACAGCAACAACAGCAGCTCCAACAAGCATGAACAGCAGCTCCAACA
AGCAAGACAGAAACAAC
Found at i:133993 original size:112 final size:112
Alignment explanation
Indices: 133837--134045 Score: 262
Period size: 112 Copynumber: 1.9 Consensus size: 112
133827 GCATGAACAG
* * * *
133837 CAGCTCCAACAAGCACAGAAGAAACAACAGCAGTTCCAATAAGCACGACAGCAACAGC-AGCAGC
1 CAGCTCCAACAAGCACAGAAGAAACAACAGCAGTTCCAACAAGCACGACAACAAAAACTA-CAGC
** * *
133901 TCCAACAAGCATGAATAGCATCTCCAACAAGCATGACAGTAACAATAA
65 TCCAACAAGCACAAACAGCAGCTCCAACAAGCATGACAGTAACAATAA
* * *
133949 CAGCTCCAACAAGCA-AGACAGCAACAACAGCAGCTT-TAACAAGCACGGCAACAAAAACTACAG
1 CAGCTCCAACAAGCACAGA-AGAAACAACAGCAG-TTCCAACAAGCACGACAACAAAAACTACAG
*
134012 CTCCAACAAGTACAAACAGCAGCTCCAACAAGCA
64 CTCCAACAAGCACAAACAGCAGCTCCAACAAGCA
134046 CGAACAACAG
Statistics
Matches: 82, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
111 3 0.04
112 76 0.93
113 3 0.04
ACGTcount: A:0.45, C:0.30, G:0.15, T:0.10
Consensus pattern (112 bp):
CAGCTCCAACAAGCACAGAAGAAACAACAGCAGTTCCAACAAGCACGACAACAAAAACTACAGCT
CCAACAAGCACAAACAGCAGCTCCAACAAGCATGACAGTAACAATAA
Found at i:134034 original size:22 final size:22
Alignment explanation
Indices: 134003--134061 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 22
133993 ACGGCAACAA
* *
134003 AAACTACAGCTCCAACAAGTAC
1 AAACAACAGCTCCAACAAGCAC
*
134025 AAACAGCAGCTCCAACAAGCAC
1 AAACAACAGCTCCAACAAGCAC
*
134047 GAACAACAGCTCCAA
1 AAACAACAGCTCCAA
134062 TAGGCATGAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.46, C:0.34, G:0.12, T:0.08
Consensus pattern (22 bp):
AAACAACAGCTCCAACAAGCAC
Found at i:137691 original size:13 final size:13
Alignment explanation
Indices: 137673--137697 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
137663 CATTTTATGG
137673 TGTATCGATACAA
1 TGTATCGATACAA
137686 TGTATCGATACA
1 TGTATCGATACA
137698 TACTATGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:137692 original size:33 final size:32
Alignment explanation
Indices: 137650--137717 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
137640 CGTTACAAGC
** *
137650 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATACTAT-GTGTATCAATA
137683 CAATGTATCGATACATACTATGTGTATCAATA
1 CAATGTATCGATACATACTATGTGTATCAATA
137715 CAA
1 CAA
137718 GTTTAGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATACTATGTGTATCAATA
Found at i:140063 original size:20 final size:21
Alignment explanation
Indices: 140034--140074 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
140024 TGTTTTTGAA
140034 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
140053 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
140075 AAGAATTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:140228 original size:13 final size:13
Alignment explanation
Indices: 140210--140245 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
140200 ATCCCCCTAC
*
140210 ATCGATACAGTGT
1 ATCGATACAATGT
140223 ATCGATACAATGT
1 ATCGATACAATGT
140236 ATCGATACAA
1 ATCGATACAA
140246 AGAATGCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (13 bp):
ATCGATACAATGT
Found at i:142342 original size:15 final size:15
Alignment explanation
Indices: 142322--142362 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
142312 GTTCGTCAAT
142322 TTCATTTGGAGCTTC
1 TTCATTTGGAGCTTC
*
142337 TTCATTTTGAGCTTC
1 TTCATTTGGAGCTTC
*
142352 CTCAATTTGGA
1 TTC-ATTTGGA
142363 CATTTTTATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (15 bp):
TTCATTTGGAGCTTC
Done.