Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold501
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 850550
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 6
Found at i:295158 original size:29 final size:29
Alignment explanation
Indices: 295097--295158 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
295087 ATCAATTTTT
* * *
295097 TATGGACTAATGAAGTGTATGTAATTTTT
1 TATGGACTAATGAAATGTATGTAATTATA
295126 TATGGACTAATGAAATGTATGT-ATGTATA
1 TATGGACTAATGAAATGTATGTAAT-TATA
295155 TATG
1 TATG
295159 TGTATATATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 2 0.07
29 27 0.93
ACGTcount: A:0.34, C:0.03, G:0.21, T:0.42
Consensus pattern (29 bp):
TATGGACTAATGAAATGTATGTAATTATA
Found at i:300436 original size:20 final size:21
Alignment explanation
Indices: 300411--300463 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
300401 TTCAACAATT
300411 TGTATCGATACATAAGTG-AA
1 TGTATCGATACATAAGTGAAA
* ***
300431 TGTATCAATACATGCTTGAAA
1 TGTATCGATACATAAGTGAAA
300452 TGTATCGATACA
1 TGTATCGATACA
300464 GGACTATGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (21 bp):
TGTATCGATACATAAGTGAAA
Found at i:301854 original size:20 final size:22
Alignment explanation
Indices: 301809--301864 Score: 80
Period size: 20 Copynumber: 2.6 Consensus size: 22
301799 TACAAGTGAA
*
301809 TGTATCGATACATTGCTTAAAT
1 TGTATCGATACATTGATTAAAT
*
301831 TGTATCGATACATT-ATT-CAT
1 TGTATCGATACATTGATTAAAT
301851 TGTATCGATACATT
1 TGTATCGATACATT
301865 TTGGTTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 16 0.50
21 2 0.06
22 14 0.44
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.43
Consensus pattern (22 bp):
TGTATCGATACATTGATTAAAT
Found at i:303695 original size:20 final size:20
Alignment explanation
Indices: 303670--303724 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
303660 CTGCCAGTTT
* **
303670 CATGTATCCATACAATTGTC
1 CATGTATCGATACAATTGAA
*
303690 CATGTATCGAAACAA-TGAA
1 CATGTATCGATACAATTGAA
303709 CATGTATCGATACAAT
1 CATGTATCGATACAAT
303725 ATACAAAGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:305379 original size:13 final size:13
Alignment explanation
Indices: 305361--305386 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
305351 TAGTAACCCT
305361 TGTATCAATACAA
1 TGTATCAATACAA
305374 TGTATCAATACAA
1 TGTATCAATACAA
305387 AGAATATTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
TGTATCAATACAA
Found at i:310226 original size:416 final size:416
Alignment explanation
Indices: 309446--310276 Score: 1367
Period size: 416 Copynumber: 2.0 Consensus size: 416
309436 AGTTTAGAAA
* *
309446 GAGTTTCTTTTTCAAGTTTGACAATATTTTCTTCAAGATTTCCATTTTCAATAATTTTTAATTTG
1 GAGTTTCTCTTTCAAGTTTGACAATATTTTCTTCAAGATTTCCATTTTCAATAATTTTTAATTTA
* * *
309511 TTTTCTTCTTTTAATTTTATGATTATCTTTTTCTGCTTTAAGTTCATGGATTAAAATTCTAATAC
66 TTTTCTTCTTTTAATTTTACGATTATCTTTTTATGCTTTAAGTTCATAGATTAAAATTCTAATAC
309576 TAATTCATCAAAGGCATCTTGTAATTCTTCAAAAGCATAAGAATTTGAATTTACCTCTAATTCCT
131 TAATTCATCAAAGGCATCTTGTAATTCTTCAAAAGCATAAGAATTTGAATTTACCTCTAATTCCT
*
309641 CGTGAGCCATAAGACATAGATTTGCGACTTCTTCATCATCACCGGATGAGTCACTGTCACTTCAT
196 CGTGAGCCATAAGACATAGATTTGCGACTTCTTCATCATCACCGGATGAGTCACTGTCACTACAT
*
309706 GTGGCTACCATGGCTTTCCTCTTTGGTTTGCTCATACTTTTCTTCTTTAAATTTAGACAATCAAA
261 ATGGCTACCATGGCTTTCCTCTTTGGTTTGCTCATACTTTTCTTCTTTAAATTTAGACAATCAAA
* ** * *
309771 TTTAATATGCCCCGGCTTCTTGCACTTGTATCGTATGATTTGTTCCTTGTCCTTCTTACT-GATT
326 TTTAATATGCCCCAGCTTCTTGCACTCATAGCATATGATTTGTTCCTTGTCCTTCTTACTCG-TT
*
309835 TCTCCTTTGAGCATAACCTTCTTTTGT
390 TCTCCCTTGAGCATAACCTTCTTTTGT
*
309862 GAGTTTCTCTTTCAAGTTTGACAATCTTTTCTTCAAGATTTCCATTTTCAATAATTTTTAATTTA
1 GAGTTTCTCTTTCAAGTTTGACAATATTTTCTTCAAGATTTCCATTTTCAATAATTTTTAATTTA
* * *
309927 TTTTCTTCTTTTAATTTTACGATTGTCTTTTTATGCTTTAGGTTCATAGATTCAAATTCTAATAC
66 TTTTCTTCTTTTAATTTTACGATTATCTTTTTATGCTTTAAGTTCATAGATTAAAATTCTAATAC
* *
309992 TAATTCATCAAAGGCATCTTGTAATTCTTCAAAAGTATAAGAATTTGAATTTACCTCTGATTCCT
131 TAATTCATCAAAGGCATCTTGTAATTCTTCAAAAGCATAAGAATTTGAATTTACCTCTAATTCCT
* * **
310057 CGTGAGCCATAGGATATAGATTTGCGACTTCTTCATCATCATTGGATGAGTCACTGTCACTACAT
196 CGTGAGCCATAAGACATAGATTTGCGACTTCTTCATCATCACCGGATGAGTCACTGTCACTACAT
* * * * *
310122 ATGGCTACCATGGCTTTCTTTTTTGGTTTGCTCATACTTTTCTTCTTTAAATTTGGATAATTAAA
261 ATGGCTACCATGGCTTTCCTCTTTGGTTTGCTCATACTTTTCTTCTTTAAATTTAGACAATCAAA
*
310187 TTTAATATGCCCCAGCTTTTTGCACTCATAGCATATGATTTGTTCCTTGTCCTTCTTACTCGTTT
326 TTTAATATGCCCCAGCTTCTTGCACTCATAGCATATGATTTGTTCCTTGTCCTTCTTACTCGTTT
* *
310252 CTCCCTTGAGCATAATCTTTTTTTG
391 CTCCCTTGAGCATAACCTTCTTTTG
310277 CAGCCTTCTT
Statistics
Matches: 383, Mismatches: 31, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
416 382 1.00
417 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.12, T:0.45
Consensus pattern (416 bp):
GAGTTTCTCTTTCAAGTTTGACAATATTTTCTTCAAGATTTCCATTTTCAATAATTTTTAATTTA
TTTTCTTCTTTTAATTTTACGATTATCTTTTTATGCTTTAAGTTCATAGATTAAAATTCTAATAC
TAATTCATCAAAGGCATCTTGTAATTCTTCAAAAGCATAAGAATTTGAATTTACCTCTAATTCCT
CGTGAGCCATAAGACATAGATTTGCGACTTCTTCATCATCACCGGATGAGTCACTGTCACTACAT
ATGGCTACCATGGCTTTCCTCTTTGGTTTGCTCATACTTTTCTTCTTTAAATTTAGACAATCAAA
TTTAATATGCCCCAGCTTCTTGCACTCATAGCATATGATTTGTTCCTTGTCCTTCTTACTCGTTT
CTCCCTTGAGCATAACCTTCTTTTGT
Found at i:310359 original size:3 final size:3
Alignment explanation
Indices: 310351--310383 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
310341 TCCGAGTCAC
*
310351 CAT CAT CAT CAT CAT CAT CAT CAT CAT CTT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
310384 TGTCTTTGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.33, G:0.00, T:0.36
Consensus pattern (3 bp):
CAT
Found at i:312101 original size:13 final size:13
Alignment explanation
Indices: 312083--312107 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
312073 ACAGTGAACG
312083 TGTATCGATACAT
1 TGTATCGATACAT
312096 TGTATCGATACA
1 TGTATCGATACA
312108 AAGCAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:320487 original size:55 final size:55
Alignment explanation
Indices: 320342--321193 Score: 1021
Period size: 55 Copynumber: 15.0 Consensus size: 55
320332 GATGCCTTTT
* * *
320342 CCTTTTAAGGCCCACACAAGTTGGTGGCACCCTTT-AGTCCTCAAAGGGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTTCAGTCCTCAAAGAGCAGGACG
* * *
320397 CCTTTTCCTTTCAAAACCCACACAAGTTGGTGGCACCTCTCATTCCTCAAAGAGCAGGACG
1 ------CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
* *
320458 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCTCAAAGAGCAGGACT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
* * * *
320513 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAAGATG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAGGACG
* *
320568 CCTTTCAAAGCCCACACAAGTTGGAGGCACCTTTCAATCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
*
320623 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACG
* * *
320678 CCTTTTAAAGACCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTCG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGA------CG
* *
320740 CCTTTCAATGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
* *
320795 CATTTCAAAGCCCACACAAGTTGGTGGCACCTCTCAGTCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
* * * *
320850 CCTTTTCCTTTCAAAGCCCACCCAAGTTGGTGACACCTTTCAGTCCTCAAAGAGCGGGACT
1 ------CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
** * * *
320911 CCTTTCAAAGCCCACAGGAGTTGGTGGCA-CTTCCTAGTCCTTAAAGAGTAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGACG
* * * *
320966 CTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTAAAAGAGCAGGACGCCTTCG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGA------CG
* *
321028 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCATGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
* *
321083 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAACAGGACT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
* *
321138 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGACG
321193 C
1 C
321194 TCCCTCCTTT
Statistics
Matches: 691, Mismatches: 73, Indels: 60
0.84 0.09 0.07
Matches are distributed among these distances:
54 14 0.02
55 435 0.63
56 45 0.07
60 4 0.01
61 126 0.18
62 67 0.10
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.23
Consensus pattern (55 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
Found at i:321279 original size:94 final size:95
Alignment explanation
Indices: 321112--321284 Score: 271
Period size: 94 Copynumber: 1.8 Consensus size: 95
321102 GTTGGTGGCA
* * *
321112 CCTTTCAGTCCTCAAAGAACAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTC
1 CCTTTCAGTCCTCAAAGAACAGGACACCTTTTAAAGCCCACAAAACTTGGTGGCACTTCCTAGTC
321177 CTCAAAGAGCAGGACGCTCCCTCCTTTCGC
66 CTCAAAGAGCAGGACGCTCCCTCCTTTCGC
*
321207 CCTTT-AGTCCTCAAA-AAGCAGGACACCTTTTAAAGCCCACAAAACTTGGTGGCACTT-TTCAG
1 CCTTTCAGTCCTCAAAGAA-CAGGACACCTTTTAAAGCCCACAAAACTTGGTGGCACTTCCT-AG
321269 TCCTCAAAGAGCAGGA
64 TCCTCAAAGAGCAGGA
321285 TGCTTTCTTT
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
93 3 0.04
94 64 0.89
95 5 0.07
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.24
Consensus pattern (95 bp):
CCTTTCAGTCCTCAAAGAACAGGACACCTTTTAAAGCCCACAAAACTTGGTGGCACTTCCTAGTC
CTCAAAGAGCAGGACGCTCCCTCCTTTCGC
Found at i:321350 original size:149 final size:145
Alignment explanation
Indices: 321057--321352 Score: 364
Period size: 149 Copynumber: 2.0 Consensus size: 145
321047 GTTGGTGGCA
* * * * * *
321057 CCTTTCAGTCTTCAAAGAGCATGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTC
1 CCTTTCAGTCCTCAAAAAGCAGGACACCTTTCAAAGCCCACAAAACTTGGTGGCACCTTTCAGTC
321122 CTCAAAGAACAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGC
66 CTCAAAGAACAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGC
321187 AGGACGCTCCCTCCTTTCGC
131 AGGA-----CCTCCTTTCGC
* *
321207 CCTTT-AGTCCTCAAAAAGCAGGACACCTTTTAAAGCCCACAAAACTTGGTGGCACTTTTCAGTC
1 CCTTTCAGTCCTCAAAAAGCAGGACACCTTTCAAAGCCCACAAAACTTGGTGGCACCTTTCAGTC
* * *
321271 CTCAAAGAGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTC
66 CTCAAAGAACAGGA--C--TCCTTTT--AAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTC
321335 AAAGAGCAGGA-CTCCTTT
124 AAAGAGCAGGACCTCCTTT
321353 TAAAGCCCAC
Statistics
Matches: 128, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
149 71 0.55
150 5 0.04
151 1 0.01
153 6 0.05
155 41 0.32
156 4 0.03
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (145 bp):
CCTTTCAGTCCTCAAAAAGCAGGACACCTTTCAAAGCCCACAAAACTTGGTGGCACCTTTCAGTC
CTCAAAGAACAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGC
AGGACCTCCTTTCGC
Found at i:321383 original size:55 final size:55
Alignment explanation
Indices: 321207--321633 Score: 446
Period size: 55 Copynumber: 7.5 Consensus size: 55
321197 CTCCTTTCGC
* * * *
321207 CCTTT-AGTCCTCAAAAAGCAGGACACCTTTTAAAGCCCACAAAACTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
321261 CTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGA--C--TCCTTTT--AAAGCCCACACAAGTTGGTGGCA
321322 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * *
321377 CTTTTCAGTCCTCAAAGAGCAGTATGCTTTCTTTTTTCAAATCCAACTCTAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGA--C--TC-CTTTT-AAAGCCCACACAAGTTGGTGGCA
* * * *
321438 TCTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGACCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGA---C--TCCTTTT-AAAGCCCACACAAGTTGGTGGCA
* * *
321499 CCTTTCAGTCTTCAAAAAGCAGGA-TGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACT-CCTTTTAAAGCCCACACAAGTTGGTGGCA
*
321554 CCTTTCAGTCCTCAAAGAGCAAGACTCCTTTTAAAGCCCACACAAGTTGGTGGC-
1 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
321608 GCTTCCTAGTCCTCAAAGAGCAGGAC
1 CCTTTC-AGTCCTCAAAGAGCAGGAC
321634 GCTCCCTCCT
Statistics
Matches: 314, Mismatches: 42, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
54 8 0.03
55 151 0.48
56 5 0.02
57 8 0.03
59 8 0.03
60 4 0.01
61 126 0.40
62 4 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:321431 original size:116 final size:116
Alignment explanation
Indices: 321207--321632 Score: 553
Period size: 116 Copynumber: 3.7 Consensus size: 116
321197 CTCCTTTCGC
* * * *
321207 CCTTT-AGTCCTCAAAAAGCAGGACACCTTTTAAAGCCCACAAAACTTGGTGGCACTTTTCAGTC
1 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTC
*
321271 CTCAAAGAGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCA
66 CTCAAAGAGCAGGATGCTTTCTTTTTTCAAAGCCCACACAAGTTGGTGGCA
321322 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTC
1 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTC
* * * * *
321387 CTCAAAGAGCAGTATGCTTTCTTTTTTCAAATCCAACTCTAGTTGGTGGCA
66 CTCAAAGAGCAGGATGCTTTCTTTTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * *
321438 TCTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGACCACACAAGTTGGTGGCACCTT
1 CCTTTCAGTCCTCAAAGAGCAGGA---C--TCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTT
* *
321503 TCAGTCTTCAAAAAGCAGGATGC---C---TTTCAAAGCCCACACAAGTTGGTGGCA
60 TCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
321554 CCTTTCAGTCCTCAAAGAGCAAGACTCCTTTTAAAGCCCACACAAGTTGGTGGCGC-TTCCTAGT
1 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGT
321618 CCTCAAAGAGCAGGA
65 CCTCAAAGAGCAGGA
321633 CGCTCCCTCC
Statistics
Matches: 272, Mismatches: 31, Indels: 21
0.84 0.10 0.06
Matches are distributed among these distances:
109 3 0.01
110 38 0.14
111 6 0.02
113 1 0.00
115 5 0.02
116 166 0.61
119 2 0.01
121 6 0.02
122 45 0.17
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (116 bp):
CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTC
CTCAAAGAGCAGGATGCTTTCTTTTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:321548 original size:177 final size:177
Alignment explanation
Indices: 321252--321574 Score: 519
Period size: 177 Copynumber: 1.8 Consensus size: 177
321242 CCCACAAAAC
* * *
321252 TTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGG
1 TTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCTTTCTTTTTGCAAAGACCACACAAGTTGG
* * *
321317 TGGCACCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTT
66 TGGCACCTTTCAGTCCTCAAAAAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
321382 CAGTCCTCAAAGAGCAGTATGCTTTCTTTTTTCAAATCCAACTCTAG
131 CAGTCCTCAAAGAGCAGTATGCTTTCTTTTTTCAAATCCAACTCTAG
321429 TTGGTGGCA-TCTTCCAGTCCTCAAAGAGCAGGACGCCTTT-TCTTTT-CAAAGACCACACAAGT
1 TTGGTGGCACT-TTCCAGTCCTCAAAGAGCAGGACG-CTTTCT-TTTTGCAAAGACCACACAAGT
*
321491 TGGTGGCACCTTTCAGTCTTCAAAAAGCAGGA-TGCCTTTCAAAGCCCACACAAGTTGGTGGCAC
63 TGGTGGCACCTTTCAGTCCTCAAAAAGCAGGACT-CCTTTCAAAGCCCACACAAGTTGGTGGCAC
321555 CTTTCAGTCCTCAAAGAGCA
127 CTTTCAGTCCTCAAAGAGCA
321575 AGACTCCTTT
Statistics
Matches: 135, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
176 2 0.01
177 125 0.93
178 8 0.06
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (177 bp):
TTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACGCTTTCTTTTTGCAAAGACCACACAAGTTGG
TGGCACCTTTCAGTCCTCAAAAAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
CAGTCCTCAAAGAGCAGTATGCTTTCTTTTTTCAAATCCAACTCTAG
Found at i:321604 original size:442 final size:440
Alignment explanation
Indices: 320769--321912 Score: 1649
Period size: 442 Copynumber: 2.6 Consensus size: 440
320759 GTTGGTGGCA
* * * *
320769 CCTTTCAGTCCTCAAAGAGCAGGACACATTTCAAAGCCCACACAAGTTGGTGGCACCTCTCAGTC
1 CCTTT-AGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTC
* * *
320834 CTCAAAGAGCAGGACGCCTTT-TCCTTTCAAAGCCCACCCAAGTTGGTGACACCTTTCAGTCCTC
65 CTCAAAGAGCAGGATG-CTTTCT-CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
* ** * * * *
320898 AAAGAGCGGGACTCCTTTCAAAGCCCACAGGAGTTGGTGGCACTTCCTAGTCCTTAAAGAGTAGG
128 AAAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTC-AGTCCTCAAAGAGCAGT
* * * * * *
320963 A--C--GC-TTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTAAAAGAGCAGGACG
192 ATGCTTTCTTTTTTCAAATCCCACACTAGTTGGTGGCA-TCTTCCAGTCCTCAAAGAGCAGGACG
** * * *
321022 CCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAGAGCATGACGCCTT
256 CCTTTTCCTTTCAAAGACCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAAAGCAGGACGCCTT
*
321087 TCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAACAGGACTCCTTTTAAAGCCCA
321 TCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAACAAGACTCCTTTTAAAGCCCA
321152 CACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGC
386 CACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGC
* * *
321207 CCTTTAGTCCTCAAAAAGCAGGACACCTTTTAAAGCCCACAAAACTTGGTGGCACTTTTCAGTCC
1 CCTTTAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCC
*
321272 TCAAAGAGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
66 TCAAAGAGCAGGATGCTTTCTCTTT-CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
*
321337 AGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGTAT
130 AGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCAC-TTTCAGTCCTCAAAGAGCAGTAT
* *
321402 GCTTTCTTTTTTCAAATCCAACTCTAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCCT
194 GCTTTCTTTTTTCAAATCCCACACTAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCCT
* *
321467 TTTCTTTTCAAAGACCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAAAGCAGGATGCCTTTCA
259 TTTCCTTTCAAAGACCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAAAGCAGGACGCCTTTCA
*
321532 AAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACTCCTTTTAAAGCCCACAC
324 AAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAACAAGACTCCTTTTAAAGCCCACAC
*
321597 AAGTTGGTGGCGCTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGC
389 AAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGC
* *
321649 CCTTTAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGGACTTTTCTAGTC
1 CCTTTAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTC
* * * * * *
321714 CTCAAAGAGCAGGATGCCTTCGCCTTTCAAAGCGCATACAAGTTGGTGGCCCCTTTCAGTCTTCA
65 CTCAAAGAGCAGGATGCTTTC-TCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCA
* * * *
321779 AAGTGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGTCTTCAAAGAGCA-TG
129 AAGAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGT-
* * *
321843 ATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCA-CTTTTCAGTCCTCAAAGAGCAGGACT
192 ATGCTTTCTTTTTTCAAATCCCACACTAGTTGGTGGCATC-TTCCAGTCCTCAAAGAGCAGGACG
321907 CCTTTT
256 CCTTTT
321913 AAAGCTTACA
Statistics
Matches: 633, Mismatches: 59, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
436 7 0.01
437 157 0.25
438 8 0.01
439 1 0.00
441 1 0.00
442 260 0.41
443 195 0.31
444 4 0.01
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.26
Consensus pattern (440 bp):
CCTTTAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCC
TCAAAGAGCAGGATGCTTTCTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
GAGCAGGACTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGTATGC
TTTCTTTTTTCAAATCCCACACTAGTTGGTGGCATCTTCCAGTCCTCAAAGAGCAGGACGCCTTT
TCCTTTCAAAGACCACACAAGTTGGTGGCACCTTTCAGTCTTCAAAAAGCAGGACGCCTTTCAAA
GCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAACAAGACTCCTTTTAAAGCCCACACAA
GTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTCCTTTCGC
Found at i:321818 original size:55 final size:55
Alignment explanation
Indices: 321648--321960 Score: 281
Period size: 55 Copynumber: 5.5 Consensus size: 55
321638 CCTCCTTTCG
* *
321648 CCCTTT-AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGG
1 CCCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGC
* * * *
321702 ACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTCGCCTTTCAAAGCGCATACAAGTTGGTGGC
1 CCCTTTC-AGTCCTCAAAGAGCAGGA------CGCCTTTCAAAGCCCACACAAGTTGGTGGC
* *
321764 CCCTTTCAGTCTTCAAAGTGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGC
1 CCCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGC
* * * * *
321819 ACCC-TTCAGTCTTCAAAGAGCATGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGC
1 -CCCTTTCAGTCCTCAAAGAGCAGGACGC---C--TTT-CAAAGCCCACACAAGTTGGTGGC
* * * * **
321880 ACTTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCTTACACAAGTTGGTGG-
1 CCCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGC
* *
321934 CACTTCCTAGTCCTCAAAGAGCAGGAC
1 CCCTTTC-AGTCCTCAAAGAGCAGGAC
321961 ACTCCCTCCT
Statistics
Matches: 210, Mismatches: 32, Indels: 33
0.76 0.12 0.12
Matches are distributed among these distances:
54 7 0.03
55 85 0.40
56 24 0.11
58 2 0.01
60 4 0.02
61 57 0.27
62 31 0.15
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (55 bp):
CCCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGC
Found at i:321837 original size:211 final size:207
Alignment explanation
Indices: 321444--321840 Score: 516
Period size: 211 Copynumber: 1.9 Consensus size: 207
321434 GGCATCTTCC
321444 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGACCACACAAGTTGGTGGCACCTTTCAGTC
1 AGTCCTCAAAGAGCAGGACGCC---TCTTTTCAAAGACCACACAAGTTGGTGGCACCTTTCAGTC
*
321509 TTCAAAAAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGC
63 CTCAAAAAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGC
* * *
321574 AAGACTCCTTTTAAAGCCCACACAAGTTGGTGGCGCTTCCTAGTCCTCAAAGAGCAGGACGCTCC
128 AAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCCCTTCCTAGTCCTCAAAGAGCAGGACGCTCC
321639 CTCCTTTCGCCCTTT
193 CTCCTTTCGCCCTTT
* * *
321654 AGTCCTCAAAGAGCAGGACG-C-CTTTT-AAAGCCCACACAAGTTGGTGGGACTTTTCTAGTCCT
1 AGTCCTCAAAGAGCAGGACGCCTCTTTTCAAAGACCACACAAGTTGGTGGCACCTTTC-AGTCCT
* * * * *
321716 CAAAGAGCAGGATGCCTTCGCCTTTCAAAGCGCATACAAGTTGGTGGCCCCTTTCAGTCTTCAAA
65 CAAAAAGCAGGA-----T-GCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
* * *
321781 GTGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT-C-AGTCTTCAAAGAGCA
124 GAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGG--CCCTTCCTAGTCCTCAAAGAGCA
321841 TGATGCTTTC
Statistics
Matches: 163, Mismatches: 15, Indels: 17
0.84 0.08 0.09
Matches are distributed among these distances:
204 26 0.16
205 21 0.13
209 1 0.01
210 21 0.13
211 89 0.55
212 1 0.01
213 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (207 bp):
AGTCCTCAAAGAGCAGGACGCCTCTTTTCAAAGACCACACAAGTTGGTGGCACCTTTCAGTCCTC
AAAAAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAG
ACGCCTTTCAAAGCCCACACAAGTTGGTGGCCCTTCCTAGTCCTCAAAGAGCAGGACGCTCCCTC
CTTTCGCCCTTT
Found at i:321903 original size:116 final size:117
Alignment explanation
Indices: 321649--321959 Score: 389
Period size: 116 Copynumber: 2.7 Consensus size: 117
321639 CTCCTTTCGC
* **
321649 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGGACTTTTCTAGT
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTTCTAGT
* * *
321713 CCTCAAAGAGCAGGATGCCTTCGCCTTTCAAAGCGCATACAAGTTGGTGGCC
66 CCTCAAAGAGCAGGATGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
321765 CCTTTCAGTCTTCAAAGTGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTC-AGT
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTTCTAGT
* * * ** * *
321829 CTTCAAAGAGCATGATGCTTTC-TTTTTGCAAATCCCACACTAGTTGGTGGCA
66 CCTCAAAGAGCAGGATGCCTTCGCCTTT-CAAAGCCCACACAAGTTGGTGGCA
* * **
321881 CTTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCTTACACAAGTTGGTGGCA--CTTCCTAG
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTT-CTAG
321944 TCCTCAAAGAGCAGGA
65 TCCTCAAAGAGCAGGA
321960 CACTCCCTCC
Statistics
Matches: 166, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
114 3 0.02
115 4 0.02
116 110 0.66
117 49 0.30
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (117 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTTCTAGT
CCTCAAAGAGCAGGATGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:322148 original size:55 final size:55
Alignment explanation
Indices: 321976--322232 Score: 338
Period size: 55 Copynumber: 4.6 Consensus size: 55
321966 CTCCTTTCGC
* * *
321976 CCTTT-AGTCCTCAAAGAGCATGACGCCTTTTAAAGCCCACACAAGTTGGTTGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
322030 CTTTTCAGTCCTCAAAGAGTAGGATGCTTTCTTTTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGC---C---TTTCAAAGCCCACACAAGTTGGTGGCA
*
322091 CCTTTCAGTCTTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
322146 CCTTTCAGTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
*
322201 -CTTCCTAGTCCTCAAAGAGCAGGACGCTCTTT
1 CCTTTC-AGTCCTCAAAGAGCAGGACGC-CTTT
322233 GCTTTCACCT
Statistics
Matches: 179, Mismatches: 15, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
54 8 0.04
55 117 0.65
56 4 0.02
58 2 0.01
61 48 0.27
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:322158 original size:210 final size:211
Alignment explanation
Indices: 321764--322170 Score: 611
Period size: 210 Copynumber: 1.9 Consensus size: 211
321754 AGTTGGTGGC
* *
321764 CCCTTTCAGTCTTCAAAGTGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGT
1 CCCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGT
* * * * *
321829 CTTCAAAGAGCATGATGCTTTCTTTTTGCAAATCCCACACTAGTTGGTGGCACTTTTCAGTCCTC
66 CCTCAAAGAGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
* * **
321894 AAAGAGCAGGACTCCTTTTAAAGCTTACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGG
131 AAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGG
321959 ACACTCCCTCCTTTCG
196 ACACTCCCTCCTTTCG
* * * **
321975 CCCTTT-AGTCCTCAAAGAGCATGACGCCTTTTAAAGCCCACACAAGTTGGTTGCACTTTTCAGT
1 CCCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGT
* * *
322039 CCTCAAAGAGTAGGATGCTTTCTTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCTTC
66 CCTCAAAGAGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
*
322104 AAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAG
131 AAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAG
322168 GAC
195 GAC
322171 TCCTTTTAAA
Statistics
Matches: 175, Mismatches: 20, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
210 165 0.94
211 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (211 bp):
CCCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTCAGT
CCTCAAAGAGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
AAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGG
ACACTCCCTCCTTTCG
Found at i:322239 original size:116 final size:117
Alignment explanation
Indices: 321980--322232 Score: 348
Period size: 116 Copynumber: 2.2 Consensus size: 117
321970 TTTCGCCCTT
* * *
321980 TAGTCCTCAAAGAGCATGACGCCT-TTT-AAAGCCCACACAAGTTGGTTGCACTTTTCAGTCCTC
1 TAGTCCTCAAAGAGCAGGACGCCTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
* * *
322043 AAAGAGTAGGATGCTTTCTTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
66 AAAGAGCAGGA-GC-TTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCC
*
322097 -AGTCTTCAAAGAGCAGGACG-C-CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
1 TAGTCCTCAAAGAGCAGGACGCCTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
322159 AAAGAGCAGGA-C-TC-CTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTCC
66 AAAGAGCAGGAGCTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCC
322206 TAGTCCTCAAAGAGCAGGACG-CTCTTT
1 TAGTCCTCAAAGAGCAGGACGCCTCTTT
322233 GCTTTCACCT
Statistics
Matches: 124, Mismatches: 8, Indels: 14
0.85 0.05 0.10
Matches are distributed among these distances:
109 4 0.03
110 43 0.35
111 8 0.06
112 2 0.02
114 1 0.01
115 4 0.03
116 62 0.50
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.26
Consensus pattern (117 bp):
TAGTCCTCAAAGAGCAGGACGCCTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
AAAGAGCAGGAGCTTCTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCC
Found at i:322356 original size:61 final size:61
Alignment explanation
Indices: 322242--322446 Score: 195
Period size: 61 Copynumber: 3.4 Consensus size: 61
322232 TGCTTTCACC
* * * * *
322242 TTCAGTTC-TCAAAAAGCAGGACGTCTTTTCCTTTT--AAAGCCCATACAAGTTGGTGGCACTT
1 TTCAG-TCATCAAAGAGCAGGACGCCTTTT--TTTTGCAAAGACCACACGAGTTGGTGGCACTT
* * ** * *
322303 TTCAGTCAGCAAAGAGCAGGATG-CTTTCTTTTTGCAAATCCCACACTATTTGGTGGCA-TCT
1 TTCAGTCATCAAAGAGCAGGACGCCTTT-TTTTTGCAAAGACCACACGAGTTGGTGGCACT-T
* * *
322364 TCCAGTCTTCAAAGAGCAGGACGCCTTTTTTTTTCAAAGACCACACGAGTTGGTGGCACTT
1 TTCAGTCATCAAAGAGCAGGACGCCTTTTTTTTGCAAAGACCACACGAGTTGGTGGCACTT
*
322425 TTCAGTCCTCAAAGAGCAGGAC
1 TTCAGTCATCAAAGAGCAGGAC
322447 ACACTTCTTT
Statistics
Matches: 119, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
59 4 0.03
60 7 0.06
61 103 0.87
62 5 0.04
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (61 bp):
TTCAGTCATCAAAGAGCAGGACGCCTTTTTTTTGCAAAGACCACACGAGTTGGTGGCACTT
Found at i:323139 original size:7 final size:6
Alignment explanation
Indices: 323113--323146 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
323103 GTAAAAATCA
*
323113 AAAATT AAAATT AAAATT AAAATT TAAATT AAAA
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAA
323147 AAATAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAAATT
Found at i:323184 original size:21 final size:21
Alignment explanation
Indices: 323158--323269 Score: 108
Period size: 21 Copynumber: 6.0 Consensus size: 21
323148 AATAATAATA
323158 ATAAAAATGAAGGCATGGAAT
1 ATAAAAATGAAGGCATGGAAT
323179 ATAAAAATGAAGGCATGG-A-
1 ATAAAAATGAAGGCATGGAAT
*
323198 AT---GATG--GGCATGGAAT
1 ATAAAAATGAAGGCATGGAAT
323214 ATAAAAATGAAGGCATGGAAT
1 ATAAAAATGAAGGCATGGAAT
*
323235 GT-----TG--GGCATGGAAT
1 ATAAAAATGAAGGCATGGAAT
323249 ATAAAAATGAAGGCATGGAAT
1 ATAAAAATGAAGGCATGGAAT
323270 GATGGGCATA
Statistics
Matches: 73, Mismatches: 4, Indels: 28
0.70 0.04 0.27
Matches are distributed among these distances:
14 18 0.25
15 1 0.01
16 7 0.10
19 7 0.10
20 1 0.01
21 39 0.53
ACGTcount: A:0.46, C:0.05, G:0.29, T:0.21
Consensus pattern (21 bp):
ATAAAAATGAAGGCATGGAAT
Found at i:323209 original size:35 final size:35
Alignment explanation
Indices: 323169--323278 Score: 211
Period size: 35 Copynumber: 3.1 Consensus size: 35
323159 TAAAAATGAA
323169 GGCATGGAATATAAAAATGAAGGCATGGAATGATG
1 GGCATGGAATATAAAAATGAAGGCATGGAATGATG
*
323204 GGCATGGAATATAAAAATGAAGGCATGGAATGTTG
1 GGCATGGAATATAAAAATGAAGGCATGGAATGATG
323239 GGCATGGAATATAAAAATGAAGGCATGGAATGATG
1 GGCATGGAATATAAAAATGAAGGCATGGAATGATG
323274 GGCAT
1 GGCAT
323279 AAAAAATGAA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 73 1.00
ACGTcount: A:0.41, C:0.06, G:0.32, T:0.21
Consensus pattern (35 bp):
GGCATGGAATATAAAAATGAAGGCATGGAATGATG
Found at i:325105 original size:79 final size:79
Alignment explanation
Indices: 324678--325104 Score: 701
Period size: 79 Copynumber: 5.4 Consensus size: 79
324668 TTTAATTTTC
* * *
324678 TCAATTTTTCACAATCGGGGATACTCTAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
324743 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* * *
324757 TCAATTTTTCATAATCGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCTCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
*
324822 TTATCTCTAAAACA
66 TTATTTCTAAAACA
* * * *
324836 TCAATTTTTCATAATTGGGGATACTCCAACCCCGTTATTTCAGATGGGATACTCTAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
*
324901 TTATTTCTAAAATA
66 TTATTTCTAAAACA
324915 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
324980 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* *
324994 TCAATTTTTCGTAATCGGGGATACTCCAACCCTGTTATTTCCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
*
325059 TTATCTCTAAAACA
66 TTATTTCTAAAACA
* *
325073 TCAATTTTTCATAATAGGGGATACTCCGACCC
1 TCAATTTTTCATAATCGGGGATACTCCAACCC
325105 TCTAAAACAT
Statistics
Matches: 323, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 323 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (79 bp):
TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
TTATTTCTAAAACA
Found at i:325120 original size:41 final size:41
Alignment explanation
Indices: 325063--325146 Score: 134
Period size: 41 Copynumber: 2.0 Consensus size: 41
325053 CCGGTTTTAT
* *
325063 CTCTAAAACATCAATTTTTCATAAT-AGGGGATACTCCGACC
1 CTCTAAAACATCAATTTTTCATAATCA-GGAATACTCCAACC
325104 CTCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACC
1 CTCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACC
325145 CT
1 CT
325147 ATTATTTTCG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
41 39 0.98
42 1 0.03
ACGTcount: A:0.36, C:0.26, G:0.08, T:0.30
Consensus pattern (41 bp):
CTCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACC
Found at i:325166 original size:199 final size:199
Alignment explanation
Indices: 324906--325303 Score: 600
Period size: 199 Copynumber: 2.0 Consensus size: 199
324896 CGGTTTTATT
* * * * *
324906 TCTAAAATATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCA
1 TCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCCATTATTTCCGAGAGGATACTCCA
* * *
324971 ACCCCGGTTTTATTTCTAAAACATCAATTTTTCGTAATCGGGGATACTCCAACCCTGTTATTTCC
66 ACCCCAGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCC
* * * * * *
325036 GAGGGGATACTCCAAC-CCCGGTTTTATCTCTAAAACATCAATTTTTCATAATAGGGGATACTCC
131 GAGGGGATACTCCAACTCCC-ATTTTAGCTCCAAAACACCAATTTCTCACAATAGGGGATACTCC
*
325100 GACCC
195 AACCC
* *
325105 TCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCTATTATTTTCGAGAGGATACTCCA
1 TCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCCATTATTTCCGAGAGGATACTCCA
* *
325170 ACCCTAGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCT
66 ACCCCAGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCC
*
325235 GAGGGGATACTCCAACTCCCATTTTAGCTCCAAAACACCAATTTCTCACAATCGGGGATACTCCA
131 GAGGGGATACTCCAACTCCCATTTTAGCTCCAAAACACCAATTTCTCACAATAGGGGATACTCCA
325300 ACCC
196 ACCC
325304 CGTTATTTTC
Statistics
Matches: 178, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
199 175 0.98
200 3 0.02
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (199 bp):
TCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCCATTATTTCCGAGAGGATACTCCA
ACCCCAGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCC
GAGGGGATACTCCAACTCCCATTTTAGCTCCAAAACACCAATTTCTCACAATAGGGGATACTCCA
ACCC
Found at i:325198 original size:120 final size:120
Alignment explanation
Indices: 324985--325224 Score: 381
Period size: 120 Copynumber: 2.0 Consensus size: 120
324975 CGGTTTTATT
* * * * *
324985 TCTAAAACATCAATTTTTCGTAATCGGGGATACTCCAACCCTGTTATTTCCGAGGGGATACTCCA
1 TCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCTATTATTTCCGAGAGGATACTCCA
* *
325050 ACCCCGGTTTTATCTCTAAAACATCAATTTTTCATAATAGGGGATACTCCGACCC
66 ACCCCAGTTTTATCTCTAAAACATCAATTTTTCATAATAGGGGATACTCCAACCC
*
325105 TCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCTATTATTTTCGAGAGGATACTCCA
1 TCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCTATTATTTCCGAGAGGATACTCCA
* * *
325170 ACCCTAGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCC
66 ACCCCAGTTTTATCTCTAAAACATCAATTTTTCATAATAGGGGATACTCCAACCC
325225 CGTTATTTCT
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
120 109 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (120 bp):
TCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCTATTATTTCCGAGAGGATACTCCA
ACCCCAGTTTTATCTCTAAAACATCAATTTTTCATAATAGGGGATACTCCAACCC
Found at i:325243 original size:79 final size:78
Alignment explanation
Indices: 325105--325385 Score: 321
Period size: 79 Copynumber: 3.5 Consensus size: 78
325095 ACTCCGACCC
* * ** *
325105 TCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCTATTATTTTCGAGAGGATACTCCA
1 TCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCA
*
325170 ACCCTAGTTTTATT
66 ACCCCA-TTTTATT
325184 TCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCC
1 TCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCC
**
325248 AACTCCCATTTTAGC
65 AAC-CCCATTTTATT
* * * * *
325263 TCCAAAACACCAATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCA
1 TCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCA
**
325328 ACCCCGACCCTTATT
66 ACCCC-A-TTTTATT
* * * *
325343 TCTAAAGCATCAATTTTTTTTATAATTGGGGATACTCTAACCC
1 TCTAAAACATCAA--TTTTTCATAATCGGGGATACTCCAACCC
325386 TGATTTTATT
Statistics
Matches: 170, Mismatches: 25, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
78 7 0.04
79 120 0.71
80 20 0.12
82 23 0.14
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (78 bp):
TCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCA
ACCCCATTTTATT
Found at i:325323 original size:278 final size:279
Alignment explanation
Indices: 324826--325379 Score: 783
Period size: 278 Copynumber: 2.0 Consensus size: 279
324816 TCGGTTTTAT
** * * *
324826 CTCTAAAACATCAATTTTTCATAATTGGGGATACTCCAACCCCGTTATTTCAGATGGGATACTCT
1 CTCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCCATTATTTCAGA-GGGATACTCC
* *
324891 AACCCCGGTTTTATTTCTAAAATATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTC
65 AACCCCAGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTC
* ** * * * **
324956 CGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCGTAATCGGGGATACTCC
130 CGAGGGGATACTCCAACCCCGATTTTAGCTCCAAAACACCAATTTCTCACAATCGGGGATACTCC
* * ***
325021 AACCCTGTTATTTCCGAGGGGATACTCCAACCCCG-GTTTTATCTCTAAAACATCAA-TTTTTCA
195 AACCCCGTTATTTCCAAGGGGATACTCCAACCCCGACCCTTATCTCTAAAACATCAATTTTTTCA
325084 TAATAGGGGATACTCCGACC
260 TAATAGGGGATACTCCGACC
*
325104 CTCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCTATTATTTTC-GAGAGGATACTC
1 CTCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCCATTA-TTTCAGAG-GGATACTC
*
325168 CAACCCTAGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTT
64 CAACCCCAGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTT
*
325233 CTGAGGGGATACTCCAACTCCC-ATTTTAGCTCCAAAACACCAATTTCTCACAATCGGGGATACT
129 CCGAGGGGATACTCCAAC-CCCGATTTTAGCTCCAAAACACCAATTTCTCACAATCGGGGATACT
* * *
325297 CCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCGACCCTTATTTCTAAAGCATCAATTTTTT
193 CCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGACCCTTATCTCTAAAACATCAA-TTTTT
* *
325362 TTATAATTGGGGATACTC
257 TCATAATAGGGGATACTC
325380 TAACCCTGAT
Statistics
Matches: 242, Mismatches: 28, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
277 1 0.00
278 198 0.82
279 23 0.10
281 20 0.08
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.32
Consensus pattern (279 bp):
CTCTAAAACATCAATTTTTCATAATCAGGAATACTCCAACCCCATTATTTCAGAGGGATACTCCA
ACCCCAGTTTTATTTCTAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCC
GAGGGGATACTCCAACCCCGATTTTAGCTCCAAAACACCAATTTCTCACAATCGGGGATACTCCA
ACCCCGTTATTTCCAAGGGGATACTCCAACCCCGACCCTTATCTCTAAAACATCAATTTTTTCAT
AATAGGGGATACTCCGACC
Found at i:327502 original size:166 final size:163
Alignment explanation
Indices: 327209--327596 Score: 392
Period size: 166 Copynumber: 2.4 Consensus size: 163
327199 ATTCTTTTTA
* * * * *
327209 TTTTC-AAATTACGGGTTTTCTTCTCTGTAAATTTTTTCG-GGAGGATTTGTCTTAATTTTGAAT
1 TTTTCGAAA-TACGGGTTTTCTACTCCGTAAATTTTTTCGAGG-GGATTTTTCTCAATTTTCAAT
* * * ** * ** * * *
327272 TTTTAAAATTCATCGAATATTTTTATTTATTTCATATTAATTTTGTTTTCAAAAATTCATTCATT
64 TTCTAAAATTCATCAAACATCATTATTTATTTCATATTAAATCAGTTTTAAAAAAGTAATTCATT
*
327337 TGCATGAGCTTTTAG-TTTTTTCCTTGAAATTTCCCTT
129 TGCATAAG-TTTTAGATTTTTTCCTTGAAA--TCCCTT
* *
327374 TTTTCGAAATACGGTGTTTTCTACTCCGTAAATTTTTTTGAGGGGATTTTTCTCAGTTTTCAATT
1 TTTTCGAAATACGG-GTTTTCTACTCCGTAAATTTTTTCGAGGGGATTTTTCTCAATTTTCAATT
*
327439 TCTAAATTTCATCAAACATCATTATTTGA-TTCATATTAAATCAGTTTTAAAAAAGTAATTCATT
65 TCTAAAATTCATCAAACATCATTATTT-ATTTCATATTAAATCAGTTTTAAAAAAGTAATTCATT
* **
327503 TTCATAAGTTTTAGATTTTTTTGTTGAAATCCCTT
129 TGCATAAGTTTTAGATTTTTTCCTTGAAATCCCTT
* ** * *
327538 TTTTTGAGAA-ACCAAGTTTTC-ATCGCCGTAAATTTTTTCGAGGAGATTTTTCTCAATTT
1 TTTTCGA-AATA-CGGGTTTTCTA-CTCCGTAAATTTTTTCGAGGGGATTTTTCTCAATTT
327597 AAACCAAGTT
Statistics
Matches: 185, Mismatches: 30, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
163 1 0.01
164 51 0.28
165 19 0.10
166 111 0.60
167 3 0.02
ACGTcount: A:0.26, C:0.13, G:0.12, T:0.49
Consensus pattern (163 bp):
TTTTCGAAATACGGGTTTTCTACTCCGTAAATTTTTTCGAGGGGATTTTTCTCAATTTTCAATTT
CTAAAATTCATCAAACATCATTATTTATTTCATATTAAATCAGTTTTAAAAAAGTAATTCATTTG
CATAAGTTTTAGATTTTTTCCTTGAAATCCCTT
Found at i:327921 original size:20 final size:20
Alignment explanation
Indices: 327896--327939 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
327886 TTTTGACTAG
*
327896 TTTGTTGGAAACTAGTCTAA
1 TTTGTTGAAAACTAGTCTAA
*
327916 TTTGTTGAAAACTAGTCTAC
1 TTTGTTGAAAACTAGTCTAA
327936 TTTG
1 TTTG
327940 CTCTCAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.43
Consensus pattern (20 bp):
TTTGTTGAAAACTAGTCTAA
Found at i:330161 original size:156 final size:154
Alignment explanation
Indices: 329874--330166 Score: 365
Period size: 156 Copynumber: 1.9 Consensus size: 154
329864 AATTTTTTTA
* * * * *
329874 AAGTCCTTTAGGGTTACCGGGTACTTTTACTTCAAAGGTATCCTCTAAGGGCATTTTCGTTTTTT
1 AAGTCCTTTAGGGGTACCGAGTACTTTTACGTCAAAGGTATCCCCTAAGGGCATTTTCGTTTTCT
* * * * * **
329939 AAGAACTAACTCCTAGGTTGTCACCTGGTCCGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGT
66 AAGAACCAACTCCTAAGTCGTCACCAGGTCCGCTTTTATGCCAAAGGTAGAAATTTAGGATAGGT
330004 TCATTCCCTCTTATCATCCTTTGT
131 TCATTCCCTCTTATCATCCTTTGT
* * * * *
330028 AAGTTCTTTAGGGGTATCGAGTACTTTTACGTCAAAGGTATCCCCTAGGGGTATTTTTGTAATTC
1 AAGTCCTTTAGGGGTACCGAGTACTTTTACGTCAAAGGTATCCCCTAAGGGCATTTTCGT--TT-
* *
330093 TCT-AGAACCAACTCCTAAGTCGTCATCAGGTCCGCTTTTATGCC-GAGAGTAGAAATTTAGGAT
63 TCTAAGAACCAACTCCTAAGTCGTCACCAGGTCCGCTTTTATGCCAAAG-GTAGAAATTTAGGAT
330156 AGGTTCATTCC
127 AGGTTCATTCC
330167 TTTTAAAATC
Statistics
Matches: 116, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
154 51 0.44
155 2 0.02
156 61 0.53
157 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (154 bp):
AAGTCCTTTAGGGGTACCGAGTACTTTTACGTCAAAGGTATCCCCTAAGGGCATTTTCGTTTTCT
AAGAACCAACTCCTAAGTCGTCACCAGGTCCGCTTTTATGCCAAAGGTAGAAATTTAGGATAGGT
TCATTCCCTCTTATCATCCTTTGT
Found at i:330199 original size:156 final size:154
Alignment explanation
Indices: 329894--330232 Score: 360
Period size: 156 Copynumber: 2.2 Consensus size: 154
329884 GGGTTACCGG
* * * * * * *
329894 GTACTTTTACTTCAAAGGTATCCTCTAAGGGCATTTTCGTTTTTTAAGAACTAACTCCTAGGTTG
1 GTACTTTTACGTCAAAGGTATCCCCTAGGGGCATTTTCGTTTTCTAAGAACCAACTCCTAAGTCG
* * ** **
329959 TCACCTGGTCCGCTTTTATGCCAAAGGTGGGCATTTAGGATAGGTTCATTCCCTCTTATCATCCT
66 TCACCAGGTCCGCTTTTATGCCAAAGGTAGAAATTTAGGATAGGTTCATTCCCTCTTAAAATCCT
* *
330024 TTGTAAGTTCTTTAGGGGTATCGA
131 TTGTAAGGTCTTTAAGGGTATCGA
* *
330048 GTACTTTTACGTCAAAGGTATCCCCTAGGGGTATTTTTGTAATTCTCT-AGAACCAACTCCTAAG
1 GTACTTTTACGTCAAAGGTATCCCCTAGGGGCATTTTCGT--TT-TCTAAGAACCAACTCCTAAG
* * *
330112 TCGTCATCAGGTCCGCTTTTATGCC-GAGAGTAGAAATTTAGGATAGGTTCATT-CCTTTTAAAA
63 TCGTCACCAGGTCCGCTTTTATGCCAAAG-GTAGAAATTTAGGATAGGTTCATTCCCTCTTAAAA
* * ** *
330175 TCTTTTTTTTGGTCTTTTAAGGGTATCGG
127 TCCTTTGTAAGGTC-TTTAAGGGTATCGA
* * *
330204 GTACTTTTATGTCGAAGGTATCTCCTAGG
1 GTACTTTTACGTCAAAGGTATCCCCTAGG
330233 AAAATTTTCA
Statistics
Matches: 152, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
154 35 0.23
155 18 0.12
156 97 0.64
157 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.38
Consensus pattern (154 bp):
GTACTTTTACGTCAAAGGTATCCCCTAGGGGCATTTTCGTTTTCTAAGAACCAACTCCTAAGTCG
TCACCAGGTCCGCTTTTATGCCAAAGGTAGAAATTTAGGATAGGTTCATTCCCTCTTAAAATCCT
TTGTAAGGTCTTTAAGGGTATCGA
Found at i:335478 original size:33 final size:33
Alignment explanation
Indices: 335440--335506 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
335430 GTTACAAGCT
*
335440 ATGTATCGATACATT-TCATAATGTATCGATACA
1 ATGTATCGATACATTGT-ACAATGTATCGATACA
* *
335473 ATGTATTGATACATTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACAATGTATCGATACA
335506 A
1 A
335507 ATAGTGATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACATTGTACAATGTATCGATACA
Found at i:335560 original size:20 final size:20
Alignment explanation
Indices: 335535--335589 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
335525 CTGCCAATCT
* **
335535 CATGTATCGATATAATTGTC
1 CATGTATCGATATAATAGAA
*
335555 CATGTATCGATACAA-AGAA
1 CATGTATCGATATAATAGAA
335574 CATGTATCGATATAAT
1 CATGTATCGATATAAT
335590 GTATCGATAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (20 bp):
CATGTATCGATATAATAGAA
Found at i:336290 original size:71 final size:70
Alignment explanation
Indices: 336175--336308 Score: 241
Period size: 71 Copynumber: 1.9 Consensus size: 70
336165 AATTTCTAAA
* *
336175 AATTTTCTCCCCTTTATCAAAGCGATTCTCCCCCTTAATCAAATGTAAAAAATTTATTTATTTCC
1 AATTTTCTCCCCTTTATCAAAGCAATTCTCCCCCTTAATAAAATGTAAAAAATTTATTTATTTCC
336240 AAAGC
66 AAAGC
336245 AATTTTCTCCCCCTTTATCAAAGCAATTCTCCCCCTTAATAAAATGTAAAAAATTTATTTATTT
1 AATTTTCT-CCCCTTTATCAAAGCAATTCTCCCCCTTAATAAAATGTAAAAAATTTATTTATTT
336309 TCAATATCTC
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
70 8 0.13
71 53 0.87
ACGTcount: A:0.34, C:0.23, G:0.04, T:0.39
Consensus pattern (70 bp):
AATTTTCTCCCCTTTATCAAAGCAATTCTCCCCCTTAATAAAATGTAAAAAATTTATTTATTTCC
AAAGC
Found at i:337611 original size:31 final size:31
Alignment explanation
Indices: 337539--337617 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 31
337529 ACCCTAATTC
* *
337539 ATAACAAACATGCATAATTCATTCACACAACAT
1 ATAA-AAACAT-CAAAATTCATTCACACAACAG
**
337572 ATTTAAACATCAAAATTCATTCA-ACAACAAG
1 ATAAAAACATCAAAATTCATTCACACAAC-AG
337603 ATAAAAACATCAAAA
1 ATAAAAACATCAAAA
337618 ATCTCAATAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
30 5 0.13
31 26 0.67
32 6 0.15
33 2 0.05
ACGTcount: A:0.54, C:0.20, G:0.03, T:0.23
Consensus pattern (31 bp):
ATAAAAACATCAAAATTCATTCACACAACAG
Found at i:343718 original size:19 final size:19
Alignment explanation
Indices: 343678--343746 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 19
343668 CAATCTCATA
**
343678 TATCGATACAATTGTCCATG
1 TATCGATACAA-TGAACATG
343698 TATCGATACAATGAACATG
1 TATCGATACAATGAACATG
* *
343717 TATCGATACAAATCAAGATG
1 TATCGATAC-AATGAACATG
*
343737 TATCAATACA
1 TATCGATACA
343747 TCTGGGTGTG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
19 16 0.37
20 27 0.63
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (19 bp):
TATCGATACAATGAACATG
Found at i:351708 original size:18 final size:19
Alignment explanation
Indices: 351677--351735 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 19
351667 TAATATGCCT
351677 AAACAAAAAATAAA-TAAAA
1 AAAC-AAAAATAAACTAAAA
* *
351696 AAATAAAACTAAACTAAAA
1 AAACAAAAATAAACTAAAA
351715 AAACAAAAA-AACAC-AAAA
1 AAACAAAAATAA-ACTAAAA
351733 AAA
1 AAA
351736 TAGAGATGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
18 17 0.50
19 17 0.50
ACGTcount: A:0.81, C:0.10, G:0.00, T:0.08
Consensus pattern (19 bp):
AAACAAAAATAAACTAAAA
Found at i:351732 original size:29 final size:29
Alignment explanation
Indices: 351675--351732 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
351665 AGTAATATGC
*
351675 CTAAACAAAAAATAAATAAAAAAATAAAA
1 CTAAACAAAAAATAAATAAAAAAACAAAA
*
351704 CTAAACTAAAAAA-ACAA-AAAAACACAAAA
1 CTAAAC-AAAAAATA-AATAAAAAAACAAAA
351733 AAATAGAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.78, C:0.12, G:0.00, T:0.10
Consensus pattern (29 bp):
CTAAACAAAAAATAAATAAAAAAACAAAA
Found at i:353014 original size:84 final size:84
Alignment explanation
Indices: 352894--353385 Score: 498
Period size: 84 Copynumber: 5.9 Consensus size: 84
352884 GCAGGACACA
* * * *
352894 CTTCTTTTCCCTTTGTCCTGAAGGAG-TAGAAAGCATTCCTTTTTTCCTTTTTCCTTTATCCTCA
1 CTTCTTTTCCCTTTGTCCTCAAGGAGCAAG-ACGCATTCCTTTTTTCCTTTTTCCTTTGTCCTCA
* * *
352958 AGGAGTAGAACCCTTTTCAT
65 AAGAGCAGGACCCTTTTCAT
* * * *
352978 CTTCTTTTCCCTTTGTCCCCAAAGAGCAGGACGCATTCCTTTTTTCCTTTTTCCTTTGTCTTCAA
1 CTTCTTTTCCCTTTGTCCTCAAGGAGCAAGACGCATTCCTTTTTTCCTTTTTCCTTTGTCCTCAA
*
353043 AGAGCAGGACCTTTTTCAT
66 AGAGCAGGACCCTTTTCAT
** * * *
353062 CCCCTTTTCCCTTTGTCCCCAAGGAGCAAGACGCATTCCATTTTTCCTTTGTCCTTTGTCCTCAA
1 CTTCTTTTCCCTTTGTCCTCAAGGAGCAAGACGCATTCCTTTTTTCCTTTTTCCTTTGTCCTCAA
* *
353127 GGAGCAGGACCCTTTTAAT
66 AGAGCAGGACCCTTTTCAT
* * * * * *
353146 CTCCTTTTCCCTTTATCTTCAAGAAGCAAGATGCATT-CTTTTTTCCTTTTTCCTTTATCCTCAA
1 CTTCTTTTCCCTTTGTCCTCAAGGAGCAAGACGCATTCCTTTTTTCCTTTTTCCTTTGTCCTCAA
* *
353210 AGAGTAGGA----TGT-AT
66 AGAGCAGGACCCTTTTCAT
* * * * * *
353224 CTTCCTTTCCTTTTGTCCTCAAGGAGTAGGACGCATTCCTTTTTTTTTTTTCTTTTCCCTTTGTC
1 CTTCTTTTCCCTTTGTCCTCAAGGAGCAAGACGCATTCC-----TTTTTTCCTTTTTCCTTTGTC
*
353289 CTTAAAGAGCAGGACCCTTTTCATT
61 CTCAAAGAGCAGGACCCTTTTCA-T
* * * * * *
353314 CTTTTTTTCCCTTTGTCCTCAAGGAGCAAGACCCATTTC-ATTCTCC-TTTTGCTTTGTCCTCAA
1 CTTCTTTTCCCTTTGTCCTCAAGGAGCAAGACGCATTCCTTTTTTCCTTTTTCCTTTGTCCTCAA
353377 AGAGCAGGA
66 AGAGCAGGA
353386 TGCCCACTCC
Statistics
Matches: 333, Mismatches: 62, Indels: 27
0.79 0.15 0.06
Matches are distributed among these distances:
78 30 0.09
79 3 0.01
83 54 0.16
84 209 0.63
85 1 0.00
88 2 0.01
89 1 0.00
90 33 0.10
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.41
Consensus pattern (84 bp):
CTTCTTTTCCCTTTGTCCTCAAGGAGCAAGACGCATTCCTTTTTTCCTTTTTCCTTTGTCCTCAA
AGAGCAGGACCCTTTTCAT
Found at i:353023 original size:48 final size:45
Alignment explanation
Indices: 352971--353107 Score: 128
Period size: 43 Copynumber: 3.1 Consensus size: 45
352961 AGTAGAACCC
352971 TTTTCATCTTCTTTTCCCTTTGTCCCCAAAGAGCAGGACGCATTCCT
1 TTTTCATC-TCTTTTCCCTTTGTCCCCAAAGAGCA-GACGCATTCCT
* **
353018 TTTT--TC-CTTTTTCCTTTGTCTTCAAAGAGCAG--G-A--CCT
1 TTTTCATCTCTTTTCCCTTTGTCCCCAAAGAGCAGACGCATTCCT
* *
353055 TTTTCATCCCCTTTTCCCTTTGTCCCCAAGGAGCAAGACGCATTCCAT
1 TTTTCAT-CTCTTTTCCCTTTGTCCCCAAAGAGC-AGACGCATTCC-T
353103 TTTTC
1 TTTTC
353108 CTTTGTCCTT
Statistics
Matches: 72, Mismatches: 7, Indels: 21
0.72 0.07 0.21
Matches are distributed among these distances:
37 7 0.10
39 2 0.03
40 2 0.03
41 20 0.28
42 3 0.04
43 22 0.31
44 1 0.01
45 3 0.04
47 6 0.08
48 6 0.08
ACGTcount: A:0.17, C:0.31, G:0.12, T:0.40
Consensus pattern (45 bp):
TTTTCATCTCTTTTCCCTTTGTCCCCAAAGAGCAGACGCATTCCT
Found at i:353075 original size:41 final size:41
Alignment explanation
Indices: 352938--353385 Score: 223
Period size: 41 Copynumber: 10.7 Consensus size: 41
352928 ATTCCTTTTT
* * * *
352938 TCCTTTTTCCTTTATCCTCAAGGAGTAGAACCCTTTTCATC
1 TCCTTTTCCCTTTGTCCTCAAGGAGCAGGACCCTTTTCATC
* * * * * *
352979 TTCTTTTCCCTTTGTCCCCAAAGAGCAGGACGCATTCCTT-TTT
1 TCCTTTTCCCTTTGTCCTCAAGGAGCAGGAC-CCTT--TTCATC
* * * *
353022 TCCTTTTTCCTTTGTCTTCAAAGAGCAGGACCTTTTTCATC
1 TCCTTTTCCCTTTGTCCTCAAGGAGCAGGACCCTTTTCATC
* * * * * * *
353063 CCCTTTTCCCTTTGTCCCCAAGGAGCAAGACGCATTCCATTTT
1 TCCTTTTCCCTTTGTCCTCAAGGAGCAGGACCCTTTTCA--TC
*
353106 TCCTTTGT-CCTTTGTCCTCAAGGAGCAGGACCCTTTTAATC
1 TCCTTT-TCCCTTTGTCCTCAAGGAGCAGGACCCTTTTCATC
* * * * * * * *
353147 TCCTTTTCCCTTTATCTTCAAGAAGCAAGATGCATTCTT-TTT
1 TCCTTTTCCCTTTGTCCTCAAGGAGCAGGA-CCCTT-TTCATC
* * * * *
353189 TCCTTTTTCCTTTATCCTCAAAGAGTAGGA----TGT-ATC
1 TCCTTTTCCCTTTGTCCTCAAGGAGCAGGACCCTTTTCATC
* * ** *
353225 TTCC-TTTCCTTTTGTCCTCAAGGAGTAGGACGCATTCCTTTTTTTTTT
1 -TCCTTTTCCCTTTGTCCTCAAGGAGCAGGA--C---CC--TTTTCATC
* * *
353273 TTCTTTTCCCTTTGTCCTTAAAGAGCAGGACCCTTTTCATTC
1 TCCTTTTCCCTTTGTCCTCAAGGAGCAGGACCCTTTTCA-TC
** * *
353315 TTTTTTTCCCTTTGTCCTCAAGGAGCAAGACCCATTTCATTC
1 TCCTTTTCCCTTTGTCCTCAAGGAGCAGGACCCTTTTCA-TC
* *
353357 TCCTTTT-GCTTTGTCCTCAAAGAGCAGGA
1 TCCTTTTCCCTTTGTCCTCAAGGAGCAGGA
353386 TGCCCACTCC
Statistics
Matches: 304, Mismatches: 78, Indels: 50
0.70 0.18 0.12
Matches are distributed among these distances:
36 24 0.08
37 4 0.01
40 3 0.01
41 102 0.34
42 77 0.25
43 63 0.21
44 3 0.01
46 1 0.00
47 4 0.01
48 23 0.08
ACGTcount: A:0.18, C:0.27, G:0.13, T:0.41
Consensus pattern (41 bp):
TCCTTTTCCCTTTGTCCTCAAGGAGCAGGACCCTTTTCATC
Found at i:353329 original size:42 final size:42
Alignment explanation
Indices: 353275--353385 Score: 152
Period size: 42 Copynumber: 2.7 Consensus size: 42
353265 TTTTTTTTTT
* * *
353275 CTTTTCCCTTTGTCCTTAAAGAGCAGGACCCTTTTCATTCTT
1 CTTTTCCCTTTGTCCTCAAAGAGCAGGACCCATTTCATTCTC
* * *
353317 TTTTTCCCTTTGTCCTCAAGGAGCAAGACCCATTTCATTCTC
1 CTTTTCCCTTTGTCCTCAAAGAGCAGGACCCATTTCATTCTC
*
353359 CTTTT-GCTTTGTCCTCAAAGAGCAGGA
1 CTTTTCCCTTTGTCCTCAAAGAGCAGGA
353386 TGCCCACTCC
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
41 19 0.32
42 40 0.68
ACGTcount: A:0.19, C:0.28, G:0.14, T:0.39
Consensus pattern (42 bp):
CTTTTCCCTTTGTCCTCAAAGAGCAGGACCCATTTCATTCTC
Found at i:353680 original size:31 final size:30
Alignment explanation
Indices: 353590--353681 Score: 103
Period size: 31 Copynumber: 3.0 Consensus size: 30
353580 GCCTTAGAAT
* *
353590 GTCAAAGCCTACACGAGTTGGTGGCACCCTA
1 GTCAAAGCCCACACAAGTTGGTGGCA-CCTA
** *
353621 GTCAAAGTTCACACAAGTTGGCGGCACCTGA
1 GTCAAAGCCCACACAAGTTGGTGGCACCT-A
* *
353652 GTCGAAGCCCACACAAGCTGGTGGCACCTA
1 GTCAAAGCCCACACAAGTTGGTGGCACCTA
353682 AGTTCGAGTC
Statistics
Matches: 50, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
30 4 0.08
31 46 0.92
ACGTcount: A:0.27, C:0.29, G:0.26, T:0.17
Consensus pattern (30 bp):
GTCAAAGCCCACACAAGTTGGTGGCACCTA
Found at i:353758 original size:149 final size:149
Alignment explanation
Indices: 353486--353776 Score: 438
Period size: 149 Copynumber: 2.0 Consensus size: 149
353476 AAGCCTGCAT
* * * * * * *
353486 AAGTTGGTGACACTTGAGTCGAAGCCCACACAAGTTAGTGGCACGTAAGTTTGAGTCTAGTCCAA
1 AAGTTGGCGACACCTGAGTCGAAGCCCACACAAGCTAGTGGCACCTAAGTTCGAGTCAAGTACAA
* * * *
353551 ATTAGTTGGCACTTATCTAAGGAGGTCAAGCCTTAGAATGTCAAAGCCTACACGAGTTGGTGGCA
66 ATTAGTTGGCACCTATCTAAGGAGGTCAAGCCTTAGAATGTCAAAGCCCACACAAGTTGGTGGAA
*
353616 CCCTAGTCAAAGTTCACAC
131 CCCTAATCAAAGTTCACAC
* *
353635 AAGTTGGCGGCACCTGAGTCGAAGCCCACACAAGCTGGTGGCACCTAAGTTCGAGTCAAGTACAA
1 AAGTTGGCGACACCTGAGTCGAAGCCCACACAAGCTAGTGGCACCTAAGTTCGAGTCAAGTACAA
* *
353700 ATTAGTTGGCACCTATCTAAGGAGGTCAAGCCTTTGAATGTCAAAGCCCACATAAGTTGGTGGAA
66 ATTAGTTGGCACCTATCTAAGGAGGTCAAGCCTTAGAATGTCAAAGCCCACACAAGTTGGTGGAA
353765 CCCTAATCAAAG
131 CCCTAATCAAAG
353777 CCCGCATAAG
Statistics
Matches: 126, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
149 126 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.23
Consensus pattern (149 bp):
AAGTTGGCGACACCTGAGTCGAAGCCCACACAAGCTAGTGGCACCTAAGTTCGAGTCAAGTACAA
ATTAGTTGGCACCTATCTAAGGAGGTCAAGCCTTAGAATGTCAAAGCCCACACAAGTTGGTGGAA
CCCTAATCAAAGTTCACAC
Found at i:353778 original size:31 final size:31
Alignment explanation
Indices: 353739--353820 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
353729 GCCTTTGAAT
*
353739 GTCAAAGCCCACATAAGTTGGTGGAACCCTAA
1 GTCAAAGCCCACATAAGTTGGTAGAACCC-AA
* * *
353771 -TCAAAGCCCGCATAAGCTGGTAGCACCCAA
1 GTCAAAGCCCACATAAGTTGGTAGAACCCAA
* *
353801 GTCTAAGCCCACAAAAGTTG
1 GTCAAAGCCCACATAAGTTG
353821 ACGACACTTG
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
30 2 0.05
31 39 0.95
ACGTcount: A:0.34, C:0.28, G:0.21, T:0.17
Consensus pattern (31 bp):
GTCAAAGCCCACATAAGTTGGTAGAACCCAA
Found at i:353797 original size:149 final size:148
Alignment explanation
Indices: 353476--353813 Score: 433
Period size: 149 Copynumber: 2.3 Consensus size: 148
353466 AACCAAGTCT
* * * * *
353476 AAGCCTGCATAAGTTGGTGACACTTGAGTCGAAGCCCACACAAGTTAGTGGCACGTAAGTTTGAG
1 AAGCCCGCATAAGTTGGTG-CACCTGAGTCGAAGCCCACACAAGCTAGTGGCACCTAAGTTCGAG
* * * * *
353541 TCTAGTCCAAATTAGTTGGCACTTATCTAAGGAGGTCAAGCCTTAGAATGTCAAAGCCTACACGA
65 TCAAGTACAAATTAGTTGGCACCTATCTAAGGAGGTCAAGCCTTAGAATGTCAAAGCCCACACAA
* *
353606 GTTGGTGGCACCCTAGTCA
130 GTTGGTGGAACCCTAATCA
** * * * *
353625 AAGTTCACACAAGTTGGCGGCACCTGAGTCGAAGCCCACACAAGCTGGTGGCACCTAAGTTCGAG
1 AAGCCCGCATAAGTTGG-TGCACCTGAGTCGAAGCCCACACAAGCTAGTGGCACCTAAGTTCGAG
* *
353690 TCAAGTACAAATTAGTTGGCACCTATCTAAGGAGGTCAAGCCTTTGAATGTCAAAGCCCACATAA
65 TCAAGTACAAATTAGTTGGCACCTATCTAAGGAGGTCAAGCCTTAGAATGTCAAAGCCCACACAA
353755 GTTGGTGGAACCCTAATCA
130 GTTGGTGGAACCCTAATCA
* ** *
353774 AAGCCCGCATAAGCTGGTAGCACCCAAGTCTAAGCCCACA
1 AAGCCCGCATAAGTTGGT-GCACCTGAGTCGAAGCCCACA
353814 AAAGTTGACG
Statistics
Matches: 158, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
149 157 0.99
150 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.22
Consensus pattern (148 bp):
AAGCCCGCATAAGTTGGTGCACCTGAGTCGAAGCCCACACAAGCTAGTGGCACCTAAGTTCGAGT
CAAGTACAAATTAGTTGGCACCTATCTAAGGAGGTCAAGCCTTAGAATGTCAAAGCCCACACAAG
TTGGTGGAACCCTAATCA
Found at i:357293 original size:30 final size:29
Alignment explanation
Indices: 357262--357341 Score: 87
Period size: 25 Copynumber: 2.8 Consensus size: 29
357252 AAAGTCATAT
357262 TTTTACCTAGATGTATCGATACATT-TCTA
1 TTTTACC-AGATGTATCGATACATTATCTA
* *
357291 TTTT--CA-ATGTATCGATACATTATGTC
1 TTTTACCAGATGTATCGATACATTATCTA
*
357317 TTTTACCCAGATGTATCAATACATT
1 TTTTA-CCAGATGTATCGATACATT
357342 CTTCAATGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
25 15 0.35
26 7 0.16
27 1 0.02
29 6 0.14
30 14 0.33
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.44
Consensus pattern (29 bp):
TTTTACCAGATGTATCGATACATTATCTA
Found at i:357352 original size:20 final size:20
Alignment explanation
Indices: 357327--357403 Score: 102
Period size: 20 Copynumber: 3.9 Consensus size: 20
357317 TTTTACCCAG
*
357327 ATGTATCAATACATTCTTCA
1 ATGTATCGATACATTCTTCA
* *
357347 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
*
357367 ATGTATCGATACATTCTTTA
1 ATGTATCGATACATTCTTCA
357387 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
357404 ATCTTTTTAC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
19 1 0.02
20 48 0.96
21 1 0.02
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:357432 original size:91 final size:93
Alignment explanation
Indices: 357272--357451 Score: 249
Period size: 91 Copynumber: 1.9 Consensus size: 93
357262 TTTTACCTAG
* *
357272 ATGTATCGATACATTTCTATTTTCAATGTATCGATACATTATGTCTTTTACCCAGATGTATCAAT
1 ATGTATCGATACATTTC--TTTTCAATGTATCGATACATTATATCTTTTACCCAAATGTATCAAT
*
357337 ACATTCTTCAATGTATCGATACATGTATGA
64 ACATTCTTCAATGTATCAATACATGTATGA
* **
357367 ATGTATCGATACA-TTC-TTT-AATGTATCGATACATTCTATCTTTTTACCCAAATGTATTGATA
1 ATGTATCGATACATTTCTTTTCAATGTATCGATACATTATATC-TTTTACCCAAATGTATCAATA
*
357429 CATTTTTCAATGTATCAATACAT
65 CATTCTTCAATGTATCAATACAT
357452 CTAGTTAAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
90 19 0.25
91 42 0.55
94 3 0.04
95 13 0.17
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (93 bp):
ATGTATCGATACATTTCTTTTCAATGTATCGATACATTATATCTTTTACCCAAATGTATCAATAC
ATTCTTCAATGTATCAATACATGTATGA
Found at i:376066 original size:22 final size:21
Alignment explanation
Indices: 376026--376066 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
376016 TTGATTAATG
*
376026 TTCATTCTTTTATTCTTGTTA
1 TTCATTCCTTTATTCTTGTTA
*
376047 TTCATTCCCTTTATTTTTGT
1 TTCATT-CCTTTATTCTTGT
376067 ATAGTCACTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.12, C:0.17, G:0.05, T:0.66
Consensus pattern (21 bp):
TTCATTCCTTTATTCTTGTTA
Found at i:386680 original size:25 final size:26
Alignment explanation
Indices: 386612--386685 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 26
386602 CCTTTTGCCA
* * *
386612 TTTGTTAAGAAATTATCATCAAGAAC
1 TTTGTCAAGAAATTTTCATCAAAAAC
*
386638 TTCTGTCGAG-AATGTTTCA-CAAAAAC
1 TT-TGTCAAGAAAT-TTTCATCAAAAAC
*
386664 TTTGTCAAGAAATTTTCGTCAA
1 TTTGTCAAGAAATTTTCATCAA
386686 TACGATAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
25 10 0.26
26 19 0.50
27 9 0.24
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (26 bp):
TTTGTCAAGAAATTTTCATCAAAAAC
Found at i:386727 original size:28 final size:28
Alignment explanation
Indices: 386695--386988 Score: 317
Period size: 28 Copynumber: 10.4 Consensus size: 28
386685 ATACGATAAT
386695 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCC
* *
386723 TTTCAAAGCCCACATGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCC
386751 TTCTCAAAGCCCACAAG-TAGTGGCATCC
1 TT-TCAAAGCCCACAAGTTAGTGGCATCC
*
386779 TTTCAAAGCCCACATGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCC
* *
386807 TTTTCAAAGCCCACGAGTCAGTGGCATCC
1 -TTTCAAAGCCCACAAGTTAGTGGCATCC
*
386836 TTCTCAAAGCCCACAAGTAAGTGGCATCC
1 TT-TCAAAGCCCACAAGTTAGTGGCATCC
*
386865 TTCTCAAAGCCCACAAGTCAGTGGCA-CC
1 TT-TCAAAGCCCACAAGTTAGTGGCATCC
* * ** *
386893 TCTT-TAAGCTCGTAAGTTAGTGGCA-CTT
1 T-TTCAAAGCCCACAAGTTAGTGGCATC-C
* * * *
386921 TTTCGAAGCCCATAACTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCC
* * *
386949 TTTTAAAGCCCACAAGTTGGTGGCAACC
1 TTTCAAAGCCCACAAGTTAGTGGCATCC
386977 TTCTCTAAAGCC
1 TT-TC-AAAGCC
386989 TACACAATTT
Statistics
Matches: 225, Mismatches: 31, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
27 32 0.14
28 97 0.43
29 90 0.40
30 6 0.03
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.26
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTTAGTGGCATCC
Found at i:386765 original size:29 final size:29
Alignment explanation
Indices: 386697--386988 Score: 328
Period size: 29 Copynumber: 10.3 Consensus size: 29
386687 ACGATAATTT
*
386697 TCAAAGCCCACAAGTTAGTGGCATCCTT-
1 TCAAAGCCCACAAGTCAGTGGCATCCTTC
*
386725 TCAAAGCCCACATGTCAGTGGCATCCTTC
1 TCAAAGCCCACAAGTCAGTGGCATCCTTC
386754 TCAAAGCCCACAAGT-AGTGGCATCCTT-
1 TCAAAGCCCACAAGTCAGTGGCATCCTTC
* * *
386781 TCAAAGCCCACATGTTAGTGGCATCCTTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTTC
*
386810 TCAAAGCCCACGAGTCAGTGGCATCCTTC
1 TCAAAGCCCACAAGTCAGTGGCATCCTTC
*
386839 TCAAAGCCCACAAGTAAGTGGCATCCTTC
1 TCAAAGCCCACAAGTCAGTGGCATCCTTC
386868 TCAAAGCCCACAAGTCAGTGGCA-CC-TC
1 TCAAAGCCCACAAGTCAGTGGCATCCTTC
** * ** * * *
386895 TTTAAGCTCGTAAGTTAGTGGCA-CTTTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTTC
* * *
386923 TCGAAGCCCATAACTCAGTGGCATCCTT-
1 TCAAAGCCCACAAGTCAGTGGCATCCTTC
* ** *
386951 TTAAAGCCCACAAGTTGGTGGCAACCTTC
1 TCAAAGCCCACAAGTCAGTGGCATCCTTC
386980 TCTAAAGCC
1 TC-AAAGCC
386989 TACACAATTT
Statistics
Matches: 223, Mismatches: 34, Indels: 12
0.83 0.13 0.04
Matches are distributed among these distances:
27 34 0.15
28 91 0.41
29 92 0.41
30 6 0.03
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
TCAAAGCCCACAAGTCAGTGGCATCCTTC
Found at i:386784 original size:56 final size:57
Alignment explanation
Indices: 386697--386988 Score: 358
Period size: 56 Copynumber: 5.1 Consensus size: 57
386687 ACGATAATTT
* * *
386697 TCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACATGTCAGTGGCATCCTTC
1 TCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTC
* *
386754 TCAAAGCCCACAAGT-AGTGGCATCCTTTCAAAGCCCACATGTTAGTGGCATCCTTT
1 TCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTC
* *
386810 TCAAAGCCCACGAGTCAGTGGCATCCTTCTCAAAGCCCACAAGTAAGTGGCATCCTTC
1 TCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGTTAGTGGCATCCTTC
* * ** * *
386868 TCAAAGCCCACAAGTCAGTGGCA-CCTCTT-TAAGCTCGTAAGTTAGTGGCA-CTTTT
1 TCAAAGCCCACAAGTCAGTGGCATCCT-TTCAAAGCCCACAAGTTAGTGGCATCCTTC
* * * * * *
386923 TCGAAGCCCATAACTCAGTGGCATCCTTTTAAAGCCCACAAGTTGGTGGCAACCTTC
1 TCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTC
386980 TCTAAAGCC
1 TC-AAAGCC
386989 TACACAATTT
Statistics
Matches: 203, Mismatches: 25, Indels: 13
0.84 0.10 0.05
Matches are distributed among these distances:
55 25 0.12
56 88 0.43
57 36 0.18
58 54 0.27
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (57 bp):
TCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTC
Found at i:387006 original size:32 final size:31
Alignment explanation
Indices: 386952--387013 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 31
386942 GGCATCCTTT
*
386952 TAAAGCCCACAAGTTGGTGGCAA-CCTTCTC
1 TAAAGCCCACAAGTTGGGGGCAACCCTTCTC
*
386982 TAAAGCCTACACAATTTGGGGGCAACCCTTCT
1 TAAAGCC--CACAAGTTGGGGGCAACCCTTCT
387014 ATACCCAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 7 0.26
32 14 0.52
33 6 0.22
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.24
Consensus pattern (31 bp):
TAAAGCCCACAAGTTGGGGGCAACCCTTCTC
Found at i:393546 original size:11 final size:11
Alignment explanation
Indices: 393530--393563 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
393520 CTTAGAAAGC
393530 AAAACAAAAAA
1 AAAACAAAAAA
393541 AAAACAAAAAA
1 AAAACAAAAAA
393552 AAAACAAAAAA
1 AAAACAAAAAA
393563 A
1 A
393564 GCAAAAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAACAAAAAA
Found at i:394964 original size:28 final size:28
Alignment explanation
Indices: 394886--395304 Score: 451
Period size: 28 Copynumber: 14.7 Consensus size: 28
394876 GTCAATACGA
* *
394886 CACCTTTTCGAAGCCCACAAGTCAGTGG
1 CACCCTTTCAAAGCCCACAAGTCAGTGG
*
394914 CATCCCTTTCCAAAGCTCACAAGTCAGTGG
1 CA-CCCTTT-CAAAGCCCACAAGTCAGTGG
394944 CACCCTTTCAAAGCCCACAAGTCAGTGG
1 CACCCTTTCAAAGCCCACAAGTCAGTGG
* *
394972 CATCCCTTTCCAAAGCTCACAAGTTAGTGG
1 CA-CCCTTT-CAAAGCCCACAAGTCAGTGG
*
395002 CACCCTTTTAAAGCCCACAAGTCAGTGG
1 CACCCTTTCAAAGCCCACAAGTCAGTGG
* * * *
395030 CATCCTTTCAGAGCTCACAAGTTAGTGG
1 CACCCTTTCAAAGCCCACAAGTCAGTGG
* * *
395058 CATCCTTCCAAAGCTCACAAGTCAGTGG
1 CACCCTTTCAAAGCCCACAAGTCAGTGG
*
395086 CATCCTTTCAAAGCCCACAAGTCAGTGG
1 CACCCTTTCAAAGCCCACAAGTCAGTGG
* * * * *
395114 CATCCTTTCAGAGACTACAAGTCAATGG
1 CACCCTTTCAAAGCCCACAAGTCAGTGG
* * * *
395142 CACCTTTTTAAAGCCCGCAAGTCAATGG
1 CACCCTTTCAAAGCCCACAAGTCAGTGG
** *
395170 CACATTTTCAAAGCCCATAAGTCAGTGG
1 CACCCTTTCAAAGCCCACAAGTCAGTGG
* * * *
395198 CATCCTTTTAAAGCCCATAAGTCAGTGC
1 CACCCTTTCAAAGCCCACAAGTCAGTGG
*
395226 CATCCTTTCAAAGCCCACAAGTCAGTGG
1 CACCCTTTCAAAGCCCACAAGTCAGTGG
* **
395254 CACCTTTTCAAAGCCCACACAAGTTGGTGG
1 CACCCTTTCAAAG-CC-CACAAGTCAGTGG
*
395284 CAACCTTCTCTAAAGCCCACA
1 CACCCTT-TC-AAAGCCCACA
395305 TAAGTTGGCG
Statistics
Matches: 334, Mismatches: 49, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
28 241 0.72
29 25 0.07
30 60 0.18
31 4 0.01
32 4 0.01
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (28 bp):
CACCCTTTCAAAGCCCACAAGTCAGTGG
Found at i:395304 original size:32 final size:30
Alignment explanation
Indices: 395229--395312 Score: 93
Period size: 32 Copynumber: 2.8 Consensus size: 30
395219 TCAGTGCCAT
**
395229 CCTT-TCAAAG-CC-CACAAGTCAGTGGCA
1 CCTTCTCAAAGCCCACACAAGTTGGTGGCA
*
395256 CCTTTTCAAAGCCCACACAAGTTGGTGGCAA
1 CCTTCTCAAAGCCCACACAAGTTGGTGGC-A
*
395287 CCTTCTCTAAAGCCCACATAAGTTGG
1 CCTTCTC-AAAGCCCACACAAGTTGG
395313 CGGTAGCCCT
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 4 0.08
28 6 0.12
29 2 0.04
30 12 0.25
31 7 0.15
32 17 0.35
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (30 bp):
CCTTCTCAAAGCCCACACAAGTTGGTGGCA
Found at i:396283 original size:20 final size:20
Alignment explanation
Indices: 396247--396284 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
396237 TAGATGTATC
*
396247 GATACATTTTTCAATTTATT
1 GATACATTTGTCAATTTATT
396267 GATACATTCTGTC-ATTTA
1 GATACATT-TGTCAATTTA
396285 CCCGGATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.29, C:0.13, G:0.08, T:0.50
Consensus pattern (20 bp):
GATACATTTGTCAATTTATT
Found at i:396315 original size:20 final size:20
Alignment explanation
Indices: 396290--396344 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
396280 ATTTACCCGG
396290 ATGTATCAATACATTTTTCA
1 ATGTATCAATACATTTTTCA
396310 ATGTATCAATACATTTTTCA
1 ATGTATCAATACATTTTTCA
*
396330 ATGTATCGATACATT
1 ATGTATCAATACATT
396345 CTATCTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.44
Consensus pattern (20 bp):
ATGTATCAATACATTTTTCA
Found at i:404866 original size:88 final size:86
Alignment explanation
Indices: 404637--404867 Score: 286
Period size: 88 Copynumber: 2.6 Consensus size: 86
404627 TCCAATTTTG
*
404637 GGGAAACTCCAT-CTTCACTATTTCGAAGGGATACTCCAACCCTGTTCTAACAAAAATTCAAATT
1 GGGAAACTCCATCCTT-ACTATTT-GAAGGGATACTCCAACCTTGTTCTAACAAAAATTCAAATT
*
404701 TTTCTTTGTATAATTTTATCCTT
64 TTCCTTTGTATAATTTTATCCTT
* * * **
404724 GGGAAAACTCCGTCCTCACTATTCT-ATGGGGATACTCCAACCTCATTCTAACAAAAATTCAAAT
1 GGG-AAACTCCATCCTTACTATT-TGA-AGGGATACTCCAACCTTGTTCTAACAAAAATTCAAAT
404788 TTTCCTTTGTATAATTTTATCCTT
63 TTTCCTTTGTATAATTTTATCCTT
* * * *
404812 AGGGAAACTCCATCCTTACTATTGTGAAGGGATATTTCAACCTTGTTTTGACAAAA
1 -GGGAAACTCCATCCTTACTATT-TGAAGGGATACTCCAACCTTGTTCTAACAAAA
404868 TTTCGTTCAT
Statistics
Matches: 121, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
87 4 0.03
88 110 0.91
89 7 0.06
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (86 bp):
GGGAAACTCCATCCTTACTATTTGAAGGGATACTCCAACCTTGTTCTAACAAAAATTCAAATTTT
CCTTTGTATAATTTTATCCTT
Found at i:405036 original size:89 final size:89
Alignment explanation
Indices: 404873--405036 Score: 188
Period size: 88 Copynumber: 1.8 Consensus size: 89
404863 CAAAATTTCG
* * * * *
404873 TTCATATAATTTTATCCTTGGGGAAAAGTAATCTCCACTACTTTAAGGGGATACCCTAATCTTAT
1 TTCATATAATTTTATCCTTGGGGAAAACTAATCCCCACTACTTTAAGGGGATAACCTAACCCTAT
*
404938 TGTTCTAAAATTTCAAATTTACCC
66 TCTTCTAAAATTTCAAATTTACCC
* * ** * *
404962 TTCATATAGTTTTATCTTTGGGGAACTCT-ATCCCCACTA-TTTCAAGGGGATAATCTAACCCTG
1 TTCATATAATTTTATCCTTGGGGAAAACTAATCCCCACTACTTT-AAGGGGATAACCTAACCCTA
405025 TTCTTCATAAAA
65 TTCTTC-TAAAA
405037 AACTTAAAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
87 3 0.05
88 29 0.48
89 29 0.48
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (89 bp):
TTCATATAATTTTATCCTTGGGGAAAACTAATCCCCACTACTTTAAGGGGATAACCTAACCCTAT
TCTTCTAAAATTTCAAATTTACCC
Found at i:405743 original size:19 final size:21
Alignment explanation
Indices: 405695--405750 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
405685 AATTTTTACA
405695 ATTTGTATCGATACAAAGAGT
1 ATTTGTATCGATACAAAGAGT
** *
405716 AAATGTATCGATACATA-AGT
1 ATTTGTATCGATACAAAGAGT
405736 -TTTGTATCGATACAA
1 ATTTGTATCGATACAA
405751 TGTATTGATA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
19 12 0.41
20 3 0.10
21 14 0.48
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (21 bp):
ATTTGTATCGATACAAAGAGT
Found at i:406471 original size:12 final size:13
Alignment explanation
Indices: 406454--406482 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
406444 GTAAAAATCA
406454 AAAATTAAAATT-
1 AAAATTAAAATTC
406466 AAAATTAAAATTC
1 AAAATTAAAATTC
406479 AAAA
1 AAAA
406483 AAAATAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (13 bp):
AAAATTAAAATTC
Found at i:406808 original size:35 final size:35
Alignment explanation
Indices: 406489--406797 Score: 532
Period size: 35 Copynumber: 8.9 Consensus size: 35
406479 AAAAAAAATA
* *
406489 ATAAAAAAGAAGGCAAGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
406524 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
406559 ATAAAAATGAAGGCATGGAATGATGGGCAT-GATAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGA-AT
406594 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
*
406629 ATAAAAATGAAGGCATGGGATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
* *
406664 ATAAAAGTGGAGGCATGGAATGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
406699 ATAAAAATGAAGGCATGGAATGAT-GGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
* *
406733 ATAAAAATGGAGGCATGGAGTGATGGGCATGGAAT
1 ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
406768 ATAAAAATGAAGGCATGGAATGATGGGCAT
1 ATAAAAATGAAGGCATGGAATGATGGGCAT
406798 AAAAAATAAA
Statistics
Matches: 259, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
34 34 0.13
35 223 0.86
36 2 0.01
ACGTcount: A:0.42, C:0.06, G:0.32, T:0.20
Consensus pattern (35 bp):
ATAAAAATGAAGGCATGGAATGATGGGCATGGAAT
Found at i:408226 original size:27 final size:28
Alignment explanation
Indices: 408192--408267 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
408182 ATTTTTCACA
408192 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
408219 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
408247 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
408268 GTTTTATTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.55
28 20 0.45
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:408310 original size:79 final size:79
Alignment explanation
Indices: 408219--408795 Score: 881
Period size: 79 Copynumber: 7.3 Consensus size: 79
408209 CCCGTTAATC
408219 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
408284 TTCAATTTTTCATA
66 TTCAATTTTTCATA
* *
408298 ATCGGGGATACTCCAACCCTGTTATTTCCGAGGGGATACTCCAACCCTGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
*
408363 ATCAATTTTTCATA
66 TTCAATTTTTCATA
* * ** * *
408377 ATCGGCGATACTCTAACCTAGTTATTTTCGAGGGAATACTCCAACCCCGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
408442 TTCAATTTTTCATA
66 TTCAATTTTTCATA
*
408456 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCTCGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
*
408521 ATCAATTTTTCATA
66 TTCAATTTTTCATA
* * *
408535 ATCGAGGATACTCCAACCCCGTTATTTCCGCGGGGATACTCCAACCTCGG-TTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
*
408599 TTCAATTTTTCGTA
66 TTCAATTTTTCATA
* * * *
408613 ATCGAGGATACTCCAACCCCGTTGTTTCCGCGGGGATACTACAACCCCGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
408678 ATT-AATTTTTCATA
66 -TTCAATTTTTCATA
* * * *
408692 ATCGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCTGATTTTATTTCT-AAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
*
408756 ATCAATTTTTCATA
66 TTCAATTTTTCATA
* * *
408770 ATCAGGGATACTCTAGCCCCGTTATT
1 ATCGGGGATACTCCAACCCCGTTATT
408796 ATCTCTAAAA
Statistics
Matches: 456, Mismatches: 39, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
77 1 0.00
78 111 0.24
79 342 0.75
80 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
TTCAATTTTTCATA
Found at i:414931 original size:158 final size:158
Alignment explanation
Indices: 414575--415015 Score: 611
Period size: 158 Copynumber: 2.8 Consensus size: 158
414565 GATTTTTTAA
* * * * * * *
414575 TTTGCAAAAAAATCATTTTGTATCTTAACGAAAAACCGAAACGATACAAAAAGTTTTTAAAACCT
1 TTTG-AAAAATATCATTTTGTATCTTAATG-GAAACCGAAAAGATACGAAAAGTTTTTGAAATCT
* * * **
414640 TTTATACCCCTACGGACCCCTATAGGAATATAAAAGATTAAAAA-AATTGA-AGTTTCTCTCGGT
64 TTTATACCCCTACGGACCCCTATAGGAATATAAAAGATTAAAAATGATTGATA-TTTATTTCAAT
*
414703 TACGAGAGTATTAATTTAATTTTATTTATTC
128 TACGAAAGTATTAATTTAATTTTATTTATTC
* * *
414734 TTT-AAAAATATCATTTCGTACCTTAATGGAAACCCGAAAAGATACGAAAAGATTTTGAAATCTT
1 TTTGAAAAATATCATTTTGTATCTTAATGGAAA-CCGAAAAGATACGAAAAGTTTTTGAAATCTT
*
414798 TTATACCCCTACGGATCCCTATAGGAATATAAAAGATTAAAAATGATTGATATTTATTTCAATTA
65 TTATACCCCTACGGACCCCTATAGGAATATAAAAGATTAAAAATGATTGATATTTATTTCAATTA
* *
414863 TGAAAGTGTTAATTTAATTTTATTTATT-
130 CGAAAGTATTAATTTAATTTTATTTATTC
414891 TTTGAAAAATATCATTTTGTATCTTAATGGAAACCTGAAAAGATACGAAAAGTTTTTGAAATCTT
1 TTTGAAAAATATCATTTTGTATCTTAATGGAAACC-GAAAAGATACGAAAAGTTTTTGAAATCTT
* *
414956 TTATACCCCTACGGACCCCCATAGGAATATAAAAGATTAAAAAATGATTAATATTTATTT
65 TTATACCCCTACGGACCCCTATAGGAATATAAAAGATT-AAAAATGATTGATATTTATTT
415016 TTACCACTGA
Statistics
Matches: 251, Mismatches: 25, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
156 3 0.01
157 94 0.37
158 130 0.52
159 24 0.10
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (158 bp):
TTTGAAAAATATCATTTTGTATCTTAATGGAAACCGAAAAGATACGAAAAGTTTTTGAAATCTTT
TATACCCCTACGGACCCCTATAGGAATATAAAAGATTAAAAATGATTGATATTTATTTCAATTAC
GAAAGTATTAATTTAATTTTATTTATTC
Found at i:416670 original size:164 final size:167
Alignment explanation
Indices: 416454--416851 Score: 423
Period size: 164 Copynumber: 2.4 Consensus size: 167
416444 TGAAATAATT
* * ** * * * * * *
416454 TGAATCTTCCAAAACTGGTTTAATATGAATTTAATGACAACATTAGATGAATTTTAAAAATTTTA
1 TGAATTTTACAAAACTCATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATTTAA
* ** * *
416519 AATCGAA-AAAAAT-CCCCCAAAAAAATTTACGGAGAACAAAACTTAGTTTTTCGAAAAAGAA-A
66 AAACGAACAAAAATGCCCCCAAAAAAATTTACAAAGAACAAAACTCAGTATTTCGAAAAA-AAGA
*
416581 ACTTTCAAGG-AAAAATTCAAAAATCTATGAAAATGAA
130 ACTTTCAAGGAAAAAATTCAAAAATCCATGAAAATGAA
* * * * *
416618 TGAATTTTAGAAAATTGATTTAATATGAATTAAATAATAATATTTTATGAATTTT-TAAA-TTAA
1 TGAATTTTACAAAACTCATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATTTAA
* * * * * * * *
416681 AAACTAACGAAAATGCTCTCGAAAAAATTTACAAAGAAGAAAACTCCGTATTTCGAAAAAAAGGG
66 AAACGAACAAAAATGCCCCCAAAAAAATTTACAAAGAACAAAACTCAGTATTTCGAAAAAAA-GA
*
416746 AGTTTCAAGGAAAAAATTCAAAAATCCATGAAAATGAA
130 ACTTTCAAGGAAAAAATTCAAAAATCCATGAAAATGAA
* * * *
416784 TGAATTTTTCAAAGCTCACTTAATATGAATGAAATAATAATATTTGATGAATTTTAAAAA-TTAA
1 TGAATTTTACAAAACTCATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATTTAA
416848 AAAC
66 AAAC
416852 TGTAAGCTCT
Statistics
Matches: 191, Mismatches: 37, Indels: 9
0.81 0.16 0.04
Matches are distributed among these distances:
162 8 0.04
163 10 0.05
164 80 0.42
165 9 0.05
166 73 0.38
167 11 0.06
ACGTcount: A:0.49, C:0.10, G:0.11, T:0.30
Consensus pattern (167 bp):
TGAATTTTACAAAACTCATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATTTAA
AAACGAACAAAAATGCCCCCAAAAAAATTTACAAAGAACAAAACTCAGTATTTCGAAAAAAAGAA
CTTTCAAGGAAAAAATTCAAAAATCCATGAAAATGAA
Found at i:425110 original size:20 final size:20
Alignment explanation
Indices: 425078--425126 Score: 89
Period size: 20 Copynumber: 2.4 Consensus size: 20
425068 GTAATTTACA
425078 CACATATCAAAAATTTATTTG
1 CACATA-CAAAAATTTATTTG
425099 CACATACAAAAATTTATTTG
1 CACATACAAAAATTTATTTG
425119 CACATACA
1 CACATACA
425127 TCTATTCTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 22 0.79
21 6 0.21
ACGTcount: A:0.45, C:0.18, G:0.04, T:0.33
Consensus pattern (20 bp):
CACATACAAAAATTTATTTG
Found at i:426922 original size:13 final size:13
Alignment explanation
Indices: 426904--426929 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
426894 ATAATCCCCC
426904 TGTATCGATACAA
1 TGTATCGATACAA
426917 TGTATCGATACAA
1 TGTATCGATACAA
426930 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:433068 original size:13 final size:13
Alignment explanation
Indices: 433050--433074 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
433040 CAATTTTTTG
433050 TGTATCGATACAC
1 TGTATCGATACAC
433063 TGTATCGATACA
1 TGTATCGATACA
433075 TACTTTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:434619 original size:51 final size:51
Alignment explanation
Indices: 434539--434657 Score: 177
Period size: 51 Copynumber: 2.4 Consensus size: 51
434529 TCGAAAATAA
*
434539 CGGGGTTGGAGT-TCCCCGATTATGAGAAATCAATATCTTAGAAATAAGGC
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATCTTAGAAATAAAGC
* * * * *
434589 CGGGGTTGAAGTATCCCTGATTGTGAGAAATCAATATTTTGGAAATAAAGC
1 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATCTTAGAAATAAAGC
434640 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
434658 TCGAAAATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 11 0.18
51 49 0.82
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATCTTAGAAATAAAGC
Found at i:434714 original size:28 final size:30
Alignment explanation
Indices: 434640--434716 Score: 108
Period size: 28 Copynumber: 2.7 Consensus size: 30
434630 GAAATAAAGC
434640 CGGGGTTGGAGTATCCCC--TCGAAAATAA
1 CGGGGTTGGAGTATCCCCGATCGAAAATAA
*
434668 CGGGGTTAGAGTATCCCCGAT-G-AAATAA
1 CGGGGTTGGAGTATCCCCGATCGAAAATAA
*
434696 CGGGGTTGGATTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
434717 TGTGAAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 42 0.95
29 1 0.02
30 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (30 bp):
CGGGGTTGGAGTATCCCCGATCGAAAATAA
Found at i:434769 original size:51 final size:51
Alignment explanation
Indices: 434700--434815 Score: 128
Period size: 51 Copynumber: 2.3 Consensus size: 51
434690 AAATAACGGG
*
434700 GTTGGATTATCCCCGATTGTGAAAAATTAGTGTTTT-GAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAG-AAATAAAATCGGA
* * * * * *
434751 GTTGGAGTGTCCCTGATTGTGGAGAATTGGTGTTTTAGAAATAAAA-CTGGG
1 GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAATC-GGA
*
434802 GTTAGAGTATCCCC
1 GTTGGAGTATCCCC
434816 TCGAAAATAA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
50 1 0.02
51 51 0.96
52 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.27, T:0.33
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAATCGGA
Found at i:434803 original size:158 final size:157
Alignment explanation
Indices: 434506--434842 Score: 394
Period size: 158 Copynumber: 2.1 Consensus size: 157
434496 GTTTGGAGAT
*
434506 AATAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTTCCCCGATTATGAGAAATCA
1 AATAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTTCCCCGATTATGAAAAATCA
** * *
434571 ATATCTTAGAAATAAGGCCGGGGTTGAAGTATCCCTGATTGTGAGAAATCAATATTTTGGAAATA
66 ATATCTTAGAAATAAAACCGGAGTTGAAGTATCCCTGATTGTGAGAAATCAATATTTTAGAAATA
* *
434636 AAGCCGGGGTTGGAGTATCCCCTCGAA
131 AAACCGGGGTTAGAGTATCCCCTCGAA
* * *
434663 AATAACGGGGTTAGAGTAT-CCC-CGATGAAATAACGGGGTTGGATTATCCCCGATTGTGAAAAA
1 AATAACGGGGTTGGAGTATCCCCTCGA--AAATAACGGGGTTGGAGT-TCCCCGATTATGAAAAA
* * * * * * * *** *
434726 TTAGTGT-TTTGAAAATAAAATCGGAGTTGGAGTGTCCCTGATTGTG-GAGAATTGGTGTTTTAG
63 TCAATATCTTAG-AAATAAAACCGGAGTTGAAGTATCCCTGATTGTGAGA-AATCAATATTTTAG
*
434789 AAATAAAACTGGGGTTAGAGTATCCCCTCGAA
126 AAATAAAACCGGGGTTAGAGTATCCCCTCGAA
*
434821 AATAACGAGGTTGGAGTATCCC
1 AATAACGGGGTTGGAGTATCCC
434843 TGATTATGAA
Statistics
Matches: 150, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
155 3 0.02
156 3 0.02
157 40 0.27
158 102 0.68
159 2 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (157 bp):
AATAACGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTTCCCCGATTATGAAAAATCA
ATATCTTAGAAATAAAACCGGAGTTGAAGTATCCCTGATTGTGAGAAATCAATATTTTAGAAATA
AAACCGGGGTTAGAGTATCCCCTCGAA
Found at i:434893 original size:51 final size:51
Alignment explanation
Indices: 434829--435097 Score: 274
Period size: 51 Copynumber: 5.3 Consensus size: 51
434819 AAAATAACGA
*
434829 GGTTGGAGTATCCCTGATTATGAAAAATTGATGTTTTAGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGG
* * * **
434880 GGTTGGAGTATCCCCAATTATGAAAAATTGGTATTTTAGAAATAAAATTAG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGG
* * * * *
434931 AGTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAGATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGG
* * * * * * **
434982 GATTGGAGTATCCCCG-GT-TGCAGTAAATCGAGGCTTTAGAGGTAAAATCGG
1 GGTTGGAGTATCCCCGATTATG-A-AAAATTGATGTTTTAGAAATAAAATCGG
* * * *
435033 AGTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTT-GAAAATGAAACCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAG-AAATAAAATCGG
*
435084 GATTGGAGTATCCC
1 GGTTGGAGTATCCC
435098 TGAGGCGAGA
Statistics
Matches: 172, Mismatches: 41, Indels: 10
0.77 0.18 0.04
Matches are distributed among these distances:
49 1 0.01
50 3 0.02
51 165 0.96
52 2 0.01
53 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGG
Found at i:434909 original size:130 final size:130
Alignment explanation
Indices: 434669--434945 Score: 346
Period size: 130 Copynumber: 2.1 Consensus size: 130
434659 CGAAAATAAC
* * *
434669 GGGGTTAGAGTAT-CCCCGATGAAATAACGGGGTTGGATTATCCCCGATTGTGAAAAATTAGTGT
1 GGGGTTAGAGTATCCCCCGA-GAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATTAGTGT
* ** * * * *
434733 TTTGAAAATAAAATCGGAGTTGGAGTGTCCCTGATTGTGGAGAATTGGTGTTTTAGAAATAAAAC
65 TTTGAAAATAAAATCGGAGTTGGAGTATCCCCAATTATGAAAAATTGGTATTTTAGAAATAAAAC
434798 T
130 T
*
434799 GGGGTTAGAGTATCCCCTCGA-AAATAACGAGGTTGGAGTATCCCTGATTATGAAAAATT-GATG
1 GGGGTTAGAGTATCCCC-CGAGAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATTAG-TG
*
434862 TTTT-AGAAATAAAATCGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTATTTTAGAAATAAA
64 TTTTGA-AAATAAAATCGGAGTTGGAGTATCCCCAATTATGAAAAATTGGTATTTTAGAAATAAA
*
434926 ATT
128 ACT
* * *
434929 AGAGTTGGAGTATCCCC
1 GGGGTTAGAGTATCCCC
434946 GATTAAGAAA
Statistics
Matches: 127, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
129 2 0.02
130 119 0.94
131 3 0.02
132 3 0.02
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (130 bp):
GGGGTTAGAGTATCCCCCGAGAAATAACGAGGTTGGAGTATCCCCGATTATGAAAAATTAGTGTT
TTGAAAATAAAATCGGAGTTGGAGTATCCCCAATTATGAAAAATTGGTATTTTAGAAATAAAACT
Found at i:435020 original size:102 final size:102
Alignment explanation
Indices: 434830--435097 Score: 326
Period size: 102 Copynumber: 2.6 Consensus size: 102
434820 AAATAACGAG
* * * * *
434830 GTTGGAGTATCCCTGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAACCGGGATTGGAGTATCCCC
* * *
434895 AATTATGAAAAATTGGTATTTTAGAAATAAAATTAGA
66 AATTATGAAAAATCGGTACTTTAGAAATAAAATCAGA
*
434932 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAGATAAAACCGGGATTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAACCGGGATTGGAGTATCCCC
** * * ** *
434997 -GGT-TGCAGTAAATCGAG-GCTTTAGAGGTAAAATCGGA
66 AATTATG-A-AAAATCG-GTACTTTAGAAATAAAATCAGA
* *
435034 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGAAAATGAAACCGGGATTGGAGTATCCC
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAACCGGGATTGGAGTATCCC
435098 TGAGGCGAGA
Statistics
Matches: 144, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
100 2 0.01
101 2 0.01
102 139 0.97
103 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (102 bp):
GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAACCGGGATTGGAGTATCCCC
AATTATGAAAAATCGGTACTTTAGAAATAAAATCAGA
Found at i:437466 original size:20 final size:19
Alignment explanation
Indices: 437395--437469 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 19
437385 AAAAGTGCCT
*
437395 AAATGTATTGATACATTAT-A
1 AAATGTATCGATACA--ATGA
*
437415 AAATGTATCGAGACAATGA
1 AAATGTATCGATACAATGA
*
437434 GCAATGTATCGATACAATGCA
1 -AAATGTATCGATACAATG-A
437455 AAATGTATCGATACA
1 AAATGTATCGATACA
437470 TCTGGGTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
18 2 0.04
19 1 0.02
20 43 0.91
21 1 0.02
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.28
Consensus pattern (19 bp):
AAATGTATCGATACAATGA
Found at i:437555 original size:20 final size:20
Alignment explanation
Indices: 437518--437555 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
437508 ATGTATCGAT
*
437518 ATAATGTATTGATACATTAA
1 ATAATGTATCGATACATTAA
*
437538 ATAATGTATCGATGCATT
1 ATAATGTATCGATACATT
437556 TCCTTGGCAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.39
Consensus pattern (20 bp):
ATAATGTATCGATACATTAA
Found at i:445782 original size:13 final size:13
Alignment explanation
Indices: 445764--445789 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
445754 CAATTTTTTG
445764 TGTATCGATACAT
1 TGTATCGATACAT
445777 TGTATCGATACAT
1 TGTATCGATACAT
445790 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:445875 original size:20 final size:20
Alignment explanation
Indices: 445850--445922 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
445840 ATCTTTTTTT
445850 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
445870 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
445891 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
445911 ATGTATCGATAC
1 ATGTATCGATAC
445923 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:445901 original size:41 final size:42
Alignment explanation
Indices: 445828--445922 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
445818 CTGCCAAGAA
*
445828 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
445870 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
445911 ATGTATCGATAC
1 ATGTATCGATAC
445923 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 37 0.71
42 15 0.29
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:446426 original size:13 final size:13
Alignment explanation
Indices: 446408--446432 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
446398 TTTAAGACAA
446408 TGTATCGATACAT
1 TGTATCGATACAT
446421 TGTATCGATACA
1 TGTATCGATACA
446433 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:446533 original size:19 final size:19
Alignment explanation
Indices: 446476--446533 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
446466 TAGCTACTAC
446476 CAATT-TCATGTATCGATA
1 CAATTGTCATGTATCGATA
* * *
446494 CAATTGTGTAAGTATCAATA
1 CAATTGT-CATGTATCGATA
446514 CAA-TGATCATGTATCGATA
1 CAATTG-TCATGTATCGATA
446533 C
1 C
446534 GAGGTATCGA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
18 5 0.16
19 13 0.42
20 13 0.42
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (19 bp):
CAATTGTCATGTATCGATA
Found at i:448744 original size:28 final size:28
Alignment explanation
Indices: 448712--449231 Score: 521
Period size: 28 Copynumber: 18.4 Consensus size: 28
448702 ATACGACCCA
*
448712 TTTCAAAGCCCACAAGTCAGTGGTATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
448740 TTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
448768 TTTCAAAGCCCACAAGTCAGTGGCATCA
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* *
448796 TTTCAAAGCCCATAAGTCATTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
** * *
448824 TTTCAAAGCAGACATGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
448852 TTTTCAAAGCCCACAAGTCAATGGCATCC
1 -TTTCAAAGCCCACAAGTCAGTGGCATCC
* * * *
448881 TTTTAAAGGCTACATGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
448909 TTTCAAAGCCCATAAGTCAGTGGCA-CC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
*
448936 TTTTCAAAGCCCACATGTCAGTGGCATCC
1 -TTTCAAAGCCCACAAGTCAGTGGCATCC
* **
448965 TTTTAAAGCCCATGAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
448993 TTCTCAAAGCCCACAAGTTAGTGACACCCC
1 TT-TCAAAGCCCACAAGTCAGTGGCA-TCC
*
449023 TTT--AAGCCCACACAAGTCAGTGGCAACC
1 TTTCAAAG-CC-CACAAGTCAGTGGCATCC
* *
449051 TCTCTCAAAGCCCAAAAGTC-GATGGCACCC
1 T-T-TCAAAGCCCACAAGTCAG-TGGCATCC
*
449081 TTTCAAAGCCCACAAGT-TGTGGCA-CC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
449107 TTTTCGAAGCCCAGAAGTCAGTGGCACCC
1 -TTTCAAAGCCCACAAGTCAGTGGCATCC
** * *
449136 TTTTGAAGCCCACAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * *
449164 TTTCAAAGCCGACAAATTAGTGGCATCC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
* * ** *
449192 TTTTAAAGCCTACAAGTTGGTGGCAACC
1 TTTCAAAGCCCACAAGTCAGTGGCATCC
449220 TTCTCCAAAGCC
1 TT-T-CAAAGCC
449232 TACACAATTT
Statistics
Matches: 411, Mismatches: 63, Indels: 34
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.00
27 25 0.06
28 290 0.71
29 63 0.15
30 26 0.06
31 2 0.00
32 3 0.01
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTCAGTGGCATCC
Found at i:448966 original size:141 final size:141
Alignment explanation
Indices: 448712--449201 Score: 514
Period size: 141 Copynumber: 3.5 Consensus size: 141
448702 ATACGACCCA
* * *
448712 TTTCAAAGCCCACAAGTCAGTGGTATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGC
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
* * * * *
448777 CCACAAGTCAGTGGCATCATTTCAAAGCCCATAAGTCATTGGCATCCTTTCAAAGCAGACATGTT
66 CCAAAAGTCAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCAGACATGTC
448842 AGTGGCATCCT
131 AGTGGCATCCT
* * * * * *
448853 TTTCAAAGCCCACAAGTCAATGGCATCCTTTTAAAGGCTACATGTCAGTGGCATCCTTTCAAAGC
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
* * * * *
448918 CCATAAGTCAGTGGCACCTTTTCAAAGCCCACATGTCAGTGGCATCCTTTTAAAGC--CCATGAG
66 CCAAAAGTCAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCAGACAT--G
448981 TCAGTGGCATCCT
129 TCAGTGGCATCCT
* * * *
448994 TCTCAAAGCCCACAAGTTAGTGACACCCCTTT--AAGCCCACACAAGTCAGTGGCAACCTCTCTC
1 TTTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAG-CC-CACAAGTCAGTGGCATCCT-T-TC
* * *
449057 AAAGCCCAAAAGTC-GATGGCACCCTTTCAAAGCCCACAAGT-TGTGGCA-CCTTTTCGAAGCCC
61 AAAGCCCAAAAGTCAG-TGGCACCATTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAG--C
*
449119 AGA-A-GTCAGTGGCACCCT
122 AGACATGTCAGTGGCATCCT
* * * * * *
449137 TTT-GAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCGACAAATTAGTGGCATCCTTTTAAAGC
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
449201 C
66 C
449202 TACAAGTTGG
Statistics
Matches: 293, Mismatches: 41, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
139 10 0.03
140 4 0.01
141 163 0.56
142 44 0.15
143 32 0.11
144 38 0.13
145 1 0.00
146 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (141 bp):
TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGC
CCAAAAGTCAGTGGCACCATTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCAGACATGTC
AGTGGCATCCT
Found at i:449249 original size:32 final size:31
Alignment explanation
Indices: 449141--449256 Score: 93
Period size: 28 Copynumber: 3.9 Consensus size: 31
449131 CACCCTTTTG
* *
449141 AAGCCCACAAGTTAGTGGC-ACCCTT-T-CA
1 AAGCCTACAAGTTGGTGGCAACCCTTCTCCA
* * * * *
449169 AAGCCGACAAATTAGTGGC-ATCCTT-T-TA
1 AAGCCTACAAGTTGGTGGCAACCCTTCTCCA
449197 AAGCCTACAAGTTGGTGGCAA-CCTTCTCCA
1 AAGCCTACAAGTTGGTGGCAACCCTTCTCCA
*
449227 AAGCCTACACAATTTGGTGGCAACCCTTCT
1 AAGCCT--ACAAGTTGGTGGCAACCCTTCT
449257 AAACCCAATG
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
28 44 0.60
29 2 0.03
30 7 0.10
32 14 0.19
33 6 0.08
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (31 bp):
AAGCCTACAAGTTGGTGGCAACCCTTCTCCA
Found at i:449805 original size:13 final size:13
Alignment explanation
Indices: 449787--449812 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
449777 ACGCACAAAA
449787 TGTATCGATACAT
1 TGTATCGATACAT
449800 TGTATCGATACAT
1 TGTATCGATACAT
449813 CACAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:449808 original size:32 final size:33
Alignment explanation
Indices: 449767--449834 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
449757 GTAGCCAAAC
449767 TTGTATCGATAC-GCACAAAATGTATCGATACA
1 TTGTATCGATACAGCACAAAATGTATCGATACA
*
449799 TTGTATCGATACATCACAAAATGTATCGATACA
1 TTGTATCGATACAGCACAAAATGTATCGATACA
449832 TTG
1 TTG
449835 GCTTGTAACG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 12 0.35
33 22 0.65
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (33 bp):
TTGTATCGATACAGCACAAAATGTATCGATACA
Found at i:454422 original size:21 final size:21
Alignment explanation
Indices: 454389--454433 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
454379 TTGCAAGTTG
*
454389 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
454411 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
454431 AAA
1 AAA
454434 ATGACAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:456255 original size:15 final size:15
Alignment explanation
Indices: 456237--456267 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
456227 TAAAAATATC
*
456237 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
456252 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
456267 C
1 C
456268 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:458345 original size:13 final size:13
Alignment explanation
Indices: 458327--458351 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
458317 GGAAATTCTA
458327 TGTATCGATACAC
1 TGTATCGATACAC
458340 TGTATCGATACA
1 TGTATCGATACA
458352 GGGTGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:460336 original size:101 final size:101
Alignment explanation
Indices: 460161--460373 Score: 426
Period size: 101 Copynumber: 2.1 Consensus size: 101
460151 TATGAATTAC
460161 TTGATTAAGGGGGAGATTTATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTGAATTACCTTA
1 TTGATTAAGGGGGAGATTTATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTGAATTACCTTA
460226 TTAAGGGGGAGAATGTACAAATTCGTTAAATTTATT
66 TTAAGGGGGAGAATGTACAAATTCGTTAAATTTATT
460262 TTGATTAAGGGGGAGATTTATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTGAATTACCTTA
1 TTGATTAAGGGGGAGATTTATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTGAATTACCTTA
460327 TTAAGGGGGAGAATGTACAAATTCGTTAAATTTATT
66 TTAAGGGGGAGAATGTACAAATTCGTTAAATTTATT
460363 TTGATTAAGGG
1 TTGATTAAGGG
460374 AAAAATAAAA
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
101 112 1.00
ACGTcount: A:0.36, C:0.06, G:0.28, T:0.30
Consensus pattern (101 bp):
TTGATTAAGGGGGAGATTTATTAATAAACGGGGGAGATAAAGGAGAGAATGCGTGAATTACCTTA
TTAAGGGGGAGAATGTACAAATTCGTTAAATTTATT
Found at i:461013 original size:13 final size:13
Alignment explanation
Indices: 460995--461020 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
460985 TACAGCAAGT
460995 ATGTATCGATACA
1 ATGTATCGATACA
461008 ATGTATCGATACA
1 ATGTATCGATACA
461021 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:464500 original size:52 final size:52
Alignment explanation
Indices: 464430--464570 Score: 203
Period size: 52 Copynumber: 2.7 Consensus size: 52
464420 GAAAATTTAT
*
464430 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGCAAATTTGC
* * *
464482 CTGCATGTATCGATACATTTTATAATTTATCGATACATCTAGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGCAAATTTGC
* **
464534 CTACATGTATCGATACA-AAAATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTTAAT-AGTGTATCGATACA
464571 ATGTATCGAT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
51 2 0.03
52 76 0.97
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGCAAATTTGC
Found at i:464577 original size:13 final size:13
Alignment explanation
Indices: 464559--464583 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
464549 CAAAAATCAG
464559 TGTATCGATACAA
1 TGTATCGATACAA
464572 TGTATCGATACA
1 TGTATCGATACA
464584 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:464668 original size:33 final size:33
Alignment explanation
Indices: 464626--464692 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
464616 AGTAGCTTAA
*
464626 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGAGACAAAAAAATATGTATCGATAC
* ***
464659 ATTGTATCGAGACAACACTTTATGTATCGATAC
1 ATTGTATCGAGACAAAAAAATATGTATCGATAC
464692 A
1 A
464693 AATCGTTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.31
Consensus pattern (33 bp):
ATTGTATCGAGACAAAAAAATATGTATCGATAC
Found at i:478456 original size:1 final size:1
Alignment explanation
Indices: 478450--478560 Score: 51
Period size: 1 Copynumber: 111.0 Consensus size: 1
478440 CATTCGTACC
* * ** * ** * ** *
478450 AAAAAAACAAAAAAAAAACAAAAAACCAAGAAAAAAAACCAAGAAAAAAAACTAAAAAAAAAGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** ** * * * *
478515 AAAACCAAAAGCAAAAAAAAACAAAAAAAAACAAACAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
478561 GGGGTCCAGA
Statistics
Matches: 80, Mismatches: 30, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 80 1.00
ACGTcount: A:0.83, C:0.13, G:0.04, T:0.01
Consensus pattern (1 bp):
A
Found at i:478474 original size:13 final size:13
Alignment explanation
Indices: 478449--478560 Score: 77
Period size: 13 Copynumber: 8.5 Consensus size: 13
478439 TCATTCGTAC
478449 CAAAAAAACAAAAA
1 CAAAAAAA-AAAAA
*
478463 -AAAAACAAAAAA
1 CAAAAAAAAAAAA
* *
478475 CCAAGAAAAAAAA
1 CAAAAAAAAAAAA
* *
478488 CCAAGAAAAAAAA
1 CAAAAAAAAAAAA
* *
478501 CTAAAAAAAAAGA
1 CAAAAAAAAAAAA
** *
478514 -AAAAACCAAAAG
1 CAAAAAAAAAAAA
478526 CAAAAAAAAACAAA
1 CAAAAAAAAA-AAA
478540 -AAAAAACAAACAAA
1 CAAAAAA-AAA-AAA
478554 CAAAAAA
1 CAAAAAA
478561 GGGGTCCAGA
Statistics
Matches: 78, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
12 12 0.15
13 51 0.65
14 9 0.12
15 6 0.08
ACGTcount: A:0.82, C:0.13, G:0.04, T:0.01
Consensus pattern (13 bp):
CAAAAAAAAAAAA
Found at i:478509 original size:44 final size:45
Alignment explanation
Indices: 478450--478558 Score: 134
Period size: 44 Copynumber: 2.4 Consensus size: 45
478440 CATTCGTACC
*
478450 AAAAAAACAAAAAAAAAACAAAAAACC-AAG-AAAAAAAACCAAGA
1 AAAAAAACAAAAAAAAAACAAAAAACCAAAGCAAAAAAAAACAA-A
* *
478494 AAAAAAACTAAAAAAAAAGAAAAAACCAAAAGCAAAAAAAAAC-AA
1 AAAAAAACAAAAAAAAAACAAAAAACC-AAAGCAAAAAAAAACAAA
478539 AAAAAAACAAACAAACAAAA
1 AAAAAAACAAA-AAA-AAAA
478559 AAGGGGTCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
44 25 0.45
45 11 0.20
46 7 0.12
47 13 0.23
ACGTcount: A:0.83, C:0.13, G:0.04, T:0.01
Consensus pattern (45 bp):
AAAAAAACAAAAAAAAAACAAAAAACCAAAGCAAAAAAAAACAAA
Found at i:478524 original size:25 final size:24
Alignment explanation
Indices: 478452--478560 Score: 86
Period size: 24 Copynumber: 4.6 Consensus size: 24
478442 TTCGTACCAA
478452 AAAAACAAAAAAAAAACAAAAAACC
1 AAAAAC-AAAAAAAAACAAAAAACC
* * *
478477 ---AAGAAAAAAAACCAAGAAA--
1 AAAAACAAAAAAAAACAAAAAACC
*
478496 AAAAACTAAAAAAAAAGAAAAAACC
1 AAAAAC-AAAAAAAAACAAAAAACC
* *
478521 AAAAGCAAAAAAAAACAAAAAA-A
1 AAAAACAAAAAAAAACAAAAAACC
478544 AACAAACAAACAAAAAA
1 AA-AAACAAA-AAAAAA
478561 GGGGTCCAGA
Statistics
Matches: 65, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
21 14 0.22
22 4 0.06
23 15 0.23
24 21 0.32
25 11 0.17
ACGTcount: A:0.83, C:0.13, G:0.04, T:0.01
Consensus pattern (24 bp):
AAAAACAAAAAAAAACAAAAAACC
Found at i:478532 original size:35 final size:35
Alignment explanation
Indices: 478458--478559 Score: 102
Period size: 35 Copynumber: 2.9 Consensus size: 35
478448 CCAAAAAAAC
* * * *
478458 AAAAAAAA-AACAAAAAACCAAGAAA-AAAAACCAA
1 AAAAAAAACAAAAAAAAACAAACAAACAAAAAGC-A
* *
478492 GAAAAAAAACTAAAAAAAAAGAAA-AAACCAAAAGCA
1 -AAAAAAAAC-AAAAAAAAACAAACAAACAAAAAGCA
478528 AAAAAAAACAAAAAAAAACAAACAAACAAAAA
1 AAAAAAAACAAAAAAAAACAAACAAACAAAAA
478560 AGGGGTCCAG
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
34 12 0.21
35 25 0.45
36 4 0.07
37 15 0.27
ACGTcount: A:0.82, C:0.13, G:0.04, T:0.01
Consensus pattern (35 bp):
AAAAAAAACAAAAAAAAACAAACAAACAAAAAGCA
Found at i:479839 original size:28 final size:28
Alignment explanation
Indices: 479807--480155 Score: 362
Period size: 28 Copynumber: 12.2 Consensus size: 28
479797 CGTTCAACTC
*
479807 TTCAAAGCCCACAGGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
479835 TTCAAAGCCCACAAGTCAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
**
479863 TTCAAATACCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
479891 TTTAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * * *
479919 TTTAAAACTCACAAGTCAGTCGCATACCTT
1 TTCAAAGCCCACAAGTCAGTGGCAT-CC-T
* *
479949 TTCAAAGCCCACACAAATCAGTGGCACCCT
1 TTCAAAG-CC-CACAAGTCAGTGGCATCCT
* * *
479979 TCCAAAGCCCACAAGTCTGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* * *
480007 TTCAAAGCCCACACAAATCAATGGCACCCT
1 TTCAAAG-CC-CACAAGTCAGTGGCATCCT
*
480037 TCCAAAGCCCACAAGTCAGTGGCA-CCAT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
* * *
480065 TTCAAAGCCCACAAGTTAGTAGTACTCC-
1 TTCAAAGCCCACAAGTCAGTGGCA-TCCT
*
480093 TTCAAAGCCCACAAGTTAGTGGCATACTCT
1 TTCAAAGCCCACAAGTCAGTGGCAT-C-CT
*
480123 TTCAAAGCCCACAAGTCGGTGGCA-CCAT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
480151 TTCAA
1 TTCAA
480156 GTCAGTGGCA
Statistics
Matches: 271, Mismatches: 37, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
27 4 0.01
28 183 0.68
29 9 0.03
30 59 0.22
31 3 0.01
32 13 0.05
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.22
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:480013 original size:58 final size:56
Alignment explanation
Indices: 479809--480148 Score: 358
Period size: 58 Copynumber: 5.9 Consensus size: 56
479799 TTCAACTCTT
* * * * *
479809 CAAAGCCCACAGGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTT
1 CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTC
** * * *
479865 CAAATACCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTT
1 CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTC
* * * * * *
479921 TAAAACTCACAAGTCAGTCGCATACCTTTTCAAAGCCCACACAAATCAGTGGCACCCTTC
1 CAAAGCCCACAAGTCAGTGGC--ACCCTTTCAAAG-CC-CACAAGTCAGTGGCACCCTTC
* * *
479981 CAAAGCCCACAAGTCTGTGGCACCCTTTCAAAGCCCACACAAATCAATGGCACCCTTC
1 CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAG-CC-CACAAGTCAGTGGCACCCTTC
* * * *
480039 CAAAGCCCACAAGTCAGTGGCACCATTTCAAAGCCCACAAGTTAGTAGTACTCCTT-
1 CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTC
* * *
480095 CAAAGCCCACAAGTTAGTGGCATACTCTTTCAAAGCCCACAAGTCGGTGGCACC
1 CAAAGCCCACAAGTCAGTGGC--ACCCTTTCAAAGCCCACAAGTCAGTGGCACC
480149 ATTTCAAGTC
Statistics
Matches: 240, Mismatches: 37, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
56 97 0.40
57 7 0.03
58 99 0.41
59 2 0.01
60 35 0.15
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.21
Consensus pattern (56 bp):
CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTC
Found at i:480098 original size:86 final size:85
Alignment explanation
Indices: 479807--480155 Score: 285
Period size: 86 Copynumber: 4.1 Consensus size: 85
479797 CGTTCAACTC
* * * * * * * * * **
479807 TTCAAAGCCCACAGGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC-ATCTTTTCAAATA
1 TTCAAAGCCCACAAGTCTGTAGCACCCTTTCAAAGCCCACAAATCAATGGCAACCCTTCCAAAGC
479871 CCACAAGTCAGTGGCATCC-T
66 CCACAAGTCAGTGGCA-CCAT
* * * * * * * * * * *
479891 TTTAAAGCCCACAAGTCAGTGGCACCCTTTTAAAACTCACAAGTCAGTCGCATACCTTTTCAAAG
1 TTCAAAGCCCACAAGTCTGTAGCACCCTTTCAAAGCCCACAAATCAATGGCA-ACCCTTCCAAAG
* *
479956 CCCACACAAATCAGTGGCACCCT
65 -CC-CACAAGTCAGTGGCACCAT
* *
479979 TCCAAAGCCCACAAGTCTGTGGCACCCTTTCAAAGCCCACACAAATCAATGGC-ACCCTTCCAAA
1 TTCAAAGCCCACAAGTCTGTAGCACCCTTTCAAAG-CC-CACAAATCAATGGCAACCCTTCCAAA
480043 GCCCACAAGTCAGTGGCACCAT
64 GCCCACAAGTCAGTGGCACCAT
* * * * * *
480065 TTCAAAGCCCACAAGT-TAGTAGTACTCC-TTCAAAGCCCACAAGTTAGTGGCATACTCTTTCAA
1 TTCAAAGCCCACAAGTCT-GTAGCAC-CCTTTCAAAGCCCACAAATCAATGGCA-ACCCTTCCAA
*
480128 AGCCCACAAGTCGGTGGCACCAT
63 AGCCCACAAGTCAGTGGCACCAT
480151 TTCAA
1 TTCAA
480156 GTCAGTGGCA
Statistics
Matches: 221, Mismatches: 33, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
84 55 0.25
85 3 0.01
86 89 0.40
87 7 0.03
88 55 0.25
89 1 0.00
90 11 0.05
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.22
Consensus pattern (85 bp):
TTCAAAGCCCACAAGTCTGTAGCACCCTTTCAAAGCCCACAAATCAATGGCAACCCTTCCAAAGC
CCACAAGTCAGTGGCACCAT
Found at i:480384 original size:49 final size:45
Alignment explanation
Indices: 480278--480400 Score: 120
Period size: 49 Copynumber: 2.6 Consensus size: 45
480268 AAGTTCGATA
* * *
480278 TCGCTGGCATTGAATCAGCATATTGGCACCTTTATTGGCCCAATG
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATTAGCCCAATG
* * * *
480323 TCACTGGCCTTGAATCAGCACATTGGTCCACTTTTTCCTTAGCCTAATG
1 TCGCTGGCCTTGAATCAGCACATTGG--CAC-CTTT-ATTAGCCCAATG
** *
480372 TCGCTGGCCTTGAATTGGCACATTAGCAC
1 TCGCTGGCCTTGAATCAGCACATTGGCAC
480401 TCCTCTCATC
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
45 23 0.37
47 6 0.10
48 3 0.05
49 31 0.49
ACGTcount: A:0.21, C:0.27, G:0.20, T:0.32
Consensus pattern (45 bp):
TCGCTGGCCTTGAATCAGCACATTGGCACCTTTATTAGCCCAATG
Found at i:481137 original size:20 final size:20
Alignment explanation
Indices: 481112--481367 Score: 134
Period size: 20 Copynumber: 11.8 Consensus size: 20
481102 TTTTACCTAG
481112 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
481132 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
** *
481152 ATGTATTAATACATTCTTCA
1 ATGTATCGATACATTTTTCA
*
481172 ATGTGTCGATACATTCTGTCTTTTTACCCA
1 ATGTATCGATACA-------TTTTT---CA
*
481202 TATGTATCAATACATTTTTCA
1 -ATGTATCGATACATTTTTCA
* * * *
481223 CTGTATCGATACATATGTAA
1 ATGTATCGATACATTTTTCA
*
481243 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
**
481263 ATACATCGATACATTTTGTCTTTTTACCA
1 ATGTATCGATACA-------TTTTT--CA
*
481292 GATGTATCGATACGTTTTTCA
1 -ATGTATCGATACATTTTTCA
* * * *
481313 ATGTATCAATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
481333 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
481353 ATGTATCGATACATT
1 ATGTATCGATACATT
481368 GTGTCTTTTT
Statistics
Matches: 174, Mismatches: 41, Indels: 42
0.68 0.16 0.16
Matches are distributed among these distances:
20 127 0.73
21 4 0.02
23 5 0.03
24 5 0.03
27 8 0.05
29 2 0.01
30 12 0.07
31 11 0.06
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:481256 original size:91 final size:91
Alignment explanation
Indices: 481101--481398 Score: 445
Period size: 91 Copynumber: 3.3 Consensus size: 91
481091 AAAAGTCACA
* **
481101 TTTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATTAATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
*
481166 TCTTCAATGTGTCGATACATTCTGTC
66 TCTTCAATGTATCGATACATTCTGTC
* * * * * *
481192 TTTTTACCCATATGTATCAATACATTTTTCACTGTATCGATACATATGTAAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
** *
481257 TCTTCAATACATCGATACATTTTGTC
66 TCTTCAATGTATCGATACATTCTGTC
* *
481283 TTTTTA-CCAGATGTATCGATACGTTTTTCAATGTATCAATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
*
481347 TCTTCAATGTATCGATACATTGTGTC
66 TCTTCAATGTATCGATACATTCTGTC
481373 TTTTTACCCAGATGTATCGATACATT
1 TTTTTACCCAGATGTATCGATACATT
481399 GAATAATATA
Statistics
Matches: 181, Mismatches: 25, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
90 79 0.44
91 102 0.56
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (91 bp):
TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
TCTTCAATGTATCGATACATTCTGTC
Found at i:483059 original size:10 final size:11
Alignment explanation
Indices: 483044--483072 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
483034 CCACTAGATG
483044 ATTTTTCAAA-
1 ATTTTTCAAAC
483054 ATTTTTCAAAC
1 ATTTTTCAAAC
483065 ATTTTTCA
1 ATTTTTCA
483073 TAAAAACTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (11 bp):
ATTTTTCAAAC
Found at i:485759 original size:34 final size:34
Alignment explanation
Indices: 485716--485834 Score: 202
Period size: 34 Copynumber: 3.5 Consensus size: 34
485706 TTAGTGTTTT
485716 CATTGTTGACTAAATGGGTGATTTGGTGGTTTGC
1 CATTGTTGACTAAATGGGTGATTTGGTGGTTTGC
485750 CATTGTTGACTAAATGGGTGATTTGGTGGTTTGC
1 CATTGTTGACTAAATGGGTGATTTGGTGGTTTGC
* * * *
485784 TATTGTTGATTAAATGGGTGATTTGGTAGTTTAC
1 CATTGTTGACTAAATGGGTGATTTGGTGGTTTGC
485818 CATTGTTGACTAAATGG
1 CATTGTTGACTAAATGG
485835 CTAAAAGATA
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 79 1.00
ACGTcount: A:0.21, C:0.08, G:0.29, T:0.42
Consensus pattern (34 bp):
CATTGTTGACTAAATGGGTGATTTGGTGGTTTGC
Found at i:490317 original size:34 final size:34
Alignment explanation
Indices: 490274--490391 Score: 200
Period size: 34 Copynumber: 3.5 Consensus size: 34
490264 AAGTGGGAGA
490274 ATTGTTGACTAAATGGGTGATTTGGTGGCTTACC
1 ATTGTTGACTAAATGGGTGATTTGGTGGCTTACC
* *
490308 ATTGTTGACTAAATGGGTAATTTGGTGGCTTGCC
1 ATTGTTGACTAAATGGGTGATTTGGTGGCTTACC
* *
490342 ATTGTTGATTAAATGGGTGATTTGGTGGTTTACC
1 ATTGTTGACTAAATGGGTGATTTGGTGGCTTACC
490376 ATTGTTGACTAAATGG
1 ATTGTTGACTAAATGG
490392 CTAAAAGATA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 77 1.00
ACGTcount: A:0.22, C:0.09, G:0.29, T:0.40
Consensus pattern (34 bp):
ATTGTTGACTAAATGGGTGATTTGGTGGCTTACC
Found at i:493602 original size:24 final size:24
Alignment explanation
Indices: 493570--493618 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
493560 GAACAATGTC
*
493570 ATCCATACTTTTAAAATCCGTAAG
1 ATCCATACTCTTAAAATCCGTAAG
493594 ATCCATACTCTTAAAATCCGTAAG
1 ATCCATACTCTTAAAATCCGTAAG
493618 A
1 A
493619 ATTTGGTATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (24 bp):
ATCCATACTCTTAAAATCCGTAAG
Found at i:496116 original size:21 final size:18
Alignment explanation
Indices: 496084--496127 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
496074 GAGATATTGG
496084 ACATGCTAAAATGCATGGA
1 ACATGCTAAAATGCAT-GA
496103 ACATGACTCAAAATGCATGA
1 ACATG-CT-AAAATGCATGA
496123 ACATG
1 ACATG
496128 GGTTGTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.22
20 9 0.39
21 9 0.39
ACGTcount: A:0.43, C:0.18, G:0.18, T:0.20
Consensus pattern (18 bp):
ACATGCTAAAATGCATGA
Found at i:498316 original size:44 final size:44
Alignment explanation
Indices: 498220--498305 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
498210 CTCTCATTAA
* * *
498220 AAAATTTTCTCCCCCTTGATAAAAATTTATTTTCAAAAATTTTG
1 AAAATTTTTTCTCCCTTAATAAAAATTTATTTTCAAAAATTTTG
498264 AAAATTTTTTCTCCCTTAATAAAAATTTATTTTCAAAAATTT
1 AAAATTTTTTCTCCCTTAATAAAAATTTATTTTCAAAAATTT
498306 CTCCCTTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.45
Consensus pattern (44 bp):
AAAATTTTTTCTCCCTTAATAAAAATTTATTTTCAAAAATTTTG
Done.