Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold503
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 995855
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 3 of 7
Found at i:327252 original size:18 final size:19
Alignment explanation
Indices: 327225--327264 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
327215 ATATGATTAT
*
327225 AATATAAT-AAAATATATA
1 AATATAATAAAAAAATATA
327243 AATATAATAAAAAAATATA
1 AATATAATAAAAAAATATA
327262 AAT
1 AAT
327265 TATTAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AATATAATAAAAAAATATA
Found at i:327911 original size:25 final size:24
Alignment explanation
Indices: 327883--327930 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
327873 ATAAATTATA
*
327883 TATATATATATATATAGACCCACAT
1 TATATATAAATATAT-GACCCACAT
*
327908 TATATATAAATATATTACCCACA
1 TATATATAAATATATGACCCACA
327931 AAGGAAATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.46, C:0.17, G:0.02, T:0.35
Consensus pattern (24 bp):
TATATATAAATATATGACCCACAT
Found at i:330017 original size:121 final size:119
Alignment explanation
Indices: 329860--330106 Score: 300
Period size: 121 Copynumber: 2.1 Consensus size: 119
329850 TAAATATTTA
* *
329860 ATTTTTTAATTATATATTTAAAAAAATTGATTCATTCAATAATTCATAACTCGATTTAAAAATAT
1 ATTTTTTAATTATATATTTAAAAAAATTGATCCATTCAATAATT-ATAACTCGATTTAAAAACAT
* * *
329925 ATTAAATTTACTTTT-AAAAATAAAAAATTATTTTATTGATTATTTTTAAATTTTTT
65 ACTAAATTT-CTTTTAAAAAATAAAAAATTATTTTACTAATTATTTTT-AATTTTTT
* * * * * * * *
329981 AGTTTTTTAATTAT-TATTTTAAGAGATTGATCCATTCGATAATTTTAAGTCGATTTAGAACCAT
1 A-TTTTTTAATTATATATTTAAAAAAATTGATCCATTCAATAATTATAACTCGATTTAAAAACAT
* *
330045 ACTAGATTTGTTTTGAAAAAATAAAAAATTATTTTACTAATTATTTTTAATTTTTT
65 ACTAAATTTCTTTT-AAAAAATAAAAAATTATTTTACTAATTATTTTTAATTTTTT
330101 ATTTTT
1 ATTTTT
330107 ATTAAATGAT
Statistics
Matches: 108, Mismatches: 15, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
119 9 0.08
120 31 0.29
121 56 0.52
122 12 0.11
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.50
Consensus pattern (119 bp):
ATTTTTTAATTATATATTTAAAAAAATTGATCCATTCAATAATTATAACTCGATTTAAAAACATA
CTAAATTTCTTTTAAAAAATAAAAAATTATTTTACTAATTATTTTTAATTTTTT
Found at i:331257 original size:16 final size:15
Alignment explanation
Indices: 331223--331256 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
331213 TAAATTTAAA
* *
331223 TTTTAAATTTTTTAT
1 TTTTAAAATTTTGAT
331238 TTTTAAAATTTTGAT
1 TTTTAAAATTTTGAT
331253 TTTT
1 TTTT
331257 TTATATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTTAAAATTTTGAT
Found at i:331283 original size:15 final size:16
Alignment explanation
Indices: 331256--331287 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
331246 TTTTGATTTT
331256 TTTATATAAAAATAAA
1 TTTATATAAAAATAAA
331272 TTTATA-AAAAATAAA
1 TTTATATAAAAATAAA
331287 T
1 T
331288 GCAAGTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
TTTATATAAAAATAAA
Found at i:332000 original size:17 final size:17
Alignment explanation
Indices: 331953--332009 Score: 73
Period size: 16 Copynumber: 3.5 Consensus size: 17
331943 CTATATCTAG
331953 AATTTAATTT-TTTTTA
1 AATTTAATTTATTTTTA
* *
331969 AAATAAATTTA-TTTTA
1 AATTTAATTTATTTTTA
*
331985 TATTTAATTTATTTTTA
1 AATTTAATTTATTTTTA
332002 AATTTAAT
1 AATTTAAT
332010 AATTTTATTC
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
16 21 0.64
17 12 0.36
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
AATTTAATTTATTTTTA
Found at i:332015 original size:32 final size:32
Alignment explanation
Indices: 331954--332030 Score: 88
Period size: 32 Copynumber: 2.5 Consensus size: 32
331944 TATATCTAGA
*
331954 ATTTAATTTTTTTTAAAATAAATTTATTTTAT
1 ATTTAATTTTTTTTAAAATAAATTAATTTTAT
* *
331986 ATTTAATTTATTTTTAAATTTAA-TAA-TTT-T
1 ATTTAATTT-TTTTTAAAATAAATTAATTTTAT
*
332016 ATTCAATTTTTTTTA
1 ATTTAATTTTTTTTA
332031 TGAATAATCA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
29 6 0.15
30 9 0.22
31 3 0.08
32 11 0.28
33 11 0.28
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (32 bp):
ATTTAATTTTTTTTAAAATAAATTAATTTTAT
Found at i:332663 original size:20 final size:20
Alignment explanation
Indices: 332627--332664 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
332617 TCCCCTTCGG
*
332627 TAAATAAATATTTTTAAATT
1 TAAATAAATATTATTAAATT
332647 TAAATAAAT-TTAATTAAA
1 TAAATAAATATT-ATTAAA
332665 AATTTATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.12
20 14 0.88
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TAAATAAATATTATTAAATT
Found at i:333189 original size:29 final size:30
Alignment explanation
Indices: 333143--333203 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
333133 GTACATATTT
*
333143 TATATGTTAATTAAAATT-TTTAT-TAATA
1 TATATGTTAATTAAAATTATTAATATAATA
**
333171 TATATTGTTAATTTTAATTATTAATATAATA
1 TATA-TGTTAATTAAAATTATTAATATAATA
333202 TA
1 TA
333204 AATTATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 4 0.15
29 12 0.44
30 4 0.15
31 7 0.26
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (30 bp):
TATATGTTAATTAAAATTATTAATATAATA
Found at i:333317 original size:2 final size:2
Alignment explanation
Indices: 333306--333334 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
333296 GTACTAACAG
333306 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
333335 CTTTTCAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:333775 original size:19 final size:19
Alignment explanation
Indices: 333753--333790 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
333743 ATTTTTTATT
333753 TAAAT-TTAATTATAAAATA
1 TAAATATTAA-TATAAAATA
333772 TAAATATTAATATAAAATA
1 TAAATATTAATATAAAATA
333791 ATTTTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TAAATATTAATATAAAATA
Found at i:334740 original size:1 final size:1
Alignment explanation
Indices: 334699--334727 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
334689 GAGTGCCCAC
334699 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
334728 AAATTTGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:334974 original size:7 final size:7
Alignment explanation
Indices: 334964--334988 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
334954 ACTTAAAATT
334964 AATTTAA
1 AATTTAA
334971 AATTTAA
1 AATTTAA
334978 AATTTAA
1 AATTTAA
334985 AATT
1 AATT
334989 CGATTTTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AATTTAA
Found at i:335074 original size:7 final size:7
Alignment explanation
Indices: 335064--335096 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
335054 TAATAAAAAA
335064 TAAATTT
1 TAAATTT
335071 TAAATTT
1 TAAATTT
335078 T-AATTT
1 TAAATTT
335084 T-AATTT
1 TAAATTT
335090 TAAATTT
1 TAAATTT
335097 GATTATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.48
7 13 0.52
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
TAAATTT
Found at i:335084 original size:13 final size:14
Alignment explanation
Indices: 335064--335096 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
335054 TAATAAAAAA
335064 TAAATTTTAAATTT
1 TAAATTTTAAATTT
335078 T-AATTTT-AATTT
1 TAAATTTTAAATTT
335090 TAAATTT
1 TAAATTT
335097 GATTATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.33
13 11 0.61
14 1 0.06
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
TAAATTTTAAATTT
Found at i:336194 original size:14 final size:14
Alignment explanation
Indices: 336160--336197 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
336150 TTCCTCCTCC
*
336160 TGTTCTCTCTCCTT
1 TGTTCTCTTTCCTT
336174 T-TTCTCTTTCCTT
1 TGTTCTCTTTCCTT
336187 TGTTCTCTTTC
1 TGTTCTCTTTC
336198 TGCAATGGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.00, C:0.32, G:0.05, T:0.63
Consensus pattern (14 bp):
TGTTCTCTTTCCTT
Found at i:341794 original size:2 final size:2
Alignment explanation
Indices: 341789--341819 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
341779 ACACACACAG
*
341789 AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
341820 AAATTAAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:344654 original size:20 final size:19
Alignment explanation
Indices: 344629--344681 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 19
344619 AACTCTTATT
344629 TGTATCGATACACA-TGCAGA
1 TGTATCGATACA-AGTGCA-A
344649 TGTATCGATACAAGTTGCAA
1 TGTATCGATACAAG-TGCAA
344669 TGTATCGATACAA
1 TGTATCGATACAA
344682 TGTATCGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 1 0.03
20 26 0.84
21 4 0.13
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (19 bp):
TGTATCGATACAAGTGCAA
Found at i:344684 original size:13 final size:13
Alignment explanation
Indices: 344666--344694 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
344656 ATACAAGTTG
344666 CAATGTATCGATA
1 CAATGTATCGATA
344679 CAATGTATCGATA
1 CAATGTATCGATA
344692 CAA
1 CAA
344695 ATTGCAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:344690 original size:33 final size:33
Alignment explanation
Indices: 344648--344711 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
344638 ACACATGCAG
* * *
344648 ATGTATCGATACAAGTTGCAATGTATCGATACA
1 ATGTATCGATACAAATTGCAATATACCGATACA
344681 ATGTATCGATACAAATTGCAATATACCGATA
1 ATGTATCGATACAAATTGCAATATACCGATA
344712 TATTATGTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (33 bp):
ATGTATCGATACAAATTGCAATATACCGATACA
Found at i:344807 original size:21 final size:20
Alignment explanation
Indices: 344781--344839 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
344771 ACACATATAG
*
344781 GAATGTATCAATACAATTCCA
1 GAATGTATCGATACAATT-CA
*
344802 GAATGTATCGATA-TATTCA
1 GAATGTATCGATACAATTCA
344821 GAATTGTATCGATACAATT
1 GAA-TGTATCGATACAATT
344840 AGTCCAATGG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 5 0.15
20 13 0.39
21 15 0.45
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (20 bp):
GAATGTATCGATACAATTCA
Found at i:347510 original size:94 final size:95
Alignment explanation
Indices: 347406--347597 Score: 323
Period size: 94 Copynumber: 2.0 Consensus size: 95
347396 ATAGCTGGAA
* *
347406 TTTTTTAGTTTTTCCTTTTGCCATATTATCTTTATCAGTTTATTGTAAGTGTCTCTAATTTTATA
1 TTTTTTAGTTTTTCCTTATGCCATATTATCTTTATCAGTTTATCGTAAGTGTCTCTAATTTTATA
*
347471 TTTTTGCTTATTTTTTGTAC-TTGTAGGCT
66 ATTTTGCTTATTTTTTGTACATTGTAGGCT
* *
347500 TTTTTTAGTTTTTCCTTATGCCTTATTGTCTTTATCAGTTTATCGTAAGTGTCTCTAATTTTATA
1 TTTTTTAGTTTTTCCTTATGCCATATTATCTTTATCAGTTTATCGTAAGTGTCTCTAATTTTATA
*
347565 ATTTTGCTTATTTTTTGTACATTGTGGGCT
66 ATTTTGCTTATTTTTTGTACATTGTAGGCT
347595 TTT
1 TTT
347598 ACTTTGGAGT
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
94 80 0.88
95 11 0.12
ACGTcount: A:0.17, C:0.12, G:0.12, T:0.59
Consensus pattern (95 bp):
TTTTTTAGTTTTTCCTTATGCCATATTATCTTTATCAGTTTATCGTAAGTGTCTCTAATTTTATA
ATTTTGCTTATTTTTTGTACATTGTAGGCT
Found at i:348969 original size:20 final size:20
Alignment explanation
Indices: 348940--348993 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
348930 ATTTACTTGC
*
348940 ATGTATCGATACATTGA-ATA
1 ATGTATCGATACAATGATA-A
* *
348960 ATGTACCGATATAATGATAA
1 ATGTATCGATACAATGATAA
348980 ATGTATCGATACAA
1 ATGTATCGATACAA
348994 AACTTATGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGATAA
Found at i:349018 original size:13 final size:13
Alignment explanation
Indices: 349000--349024 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
348990 ACAAAACTTA
349000 TGTATCGATACAT
1 TGTATCGATACAT
349013 TGTATCGATACA
1 TGTATCGATACA
349025 AATTGTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:349957 original size:49 final size:49
Alignment explanation
Indices: 349731--350078 Score: 180
Period size: 52 Copynumber: 6.9 Consensus size: 49
349721 AAGAATGATA
* * *
349731 AAGGTGCCAACATGTTAATTCAAGGCCAGCGATATTAGG-CTTAAAGATGCG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGAT--G
** * * * * * * *
349782 AATAATGTCAATGTGCTGATTCACGGCCAGCGACATTAGATTTGAAGATG
1 AA-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * * * ** * * * *
349832 AGGAGAATGCTAATGTGCTGATTCAAAGCCAATGACATTGGGCTCAGGAATG-TCA
1 A--AG-GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA--AA-GAT-G
* * * *
349887 AAGATGCCAATATGCTAATTCAAGGCCAGCAATTTTGGACTTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * * * *
349936 AAGGTGCCAATGTGCTGATTCATGGCGAGCGACATTGGACTTAAAAATGG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G
* * ** **
349986 TAAATGTGTCAATATGCTGATTCAAGGTTAGCGATATTGGACTT-AAGAAA
1 --AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * * *
350036 AAGGTGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
350079 GAAAGAGATG
Statistics
Matches: 221, Mismatches: 62, Indels: 30
0.71 0.20 0.10
Matches are distributed among these distances:
48 36 0.16
49 40 0.18
50 6 0.03
51 6 0.03
52 126 0.57
53 2 0.01
54 3 0.01
55 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (49 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
Found at i:350066 original size:48 final size:48
Alignment explanation
Indices: 349921--350082 Score: 166
Period size: 48 Copynumber: 3.3 Consensus size: 48
349911 GCCAGCAATT
** * * *
349921 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCATGGCGAGCGACA
1 TTGGACTT-AAGAAAAAGGTGCTAATGTGCTGATTCAAGGCTAGCGACA
* * * * *
349970 TTGGACTTAAAAATGGTAAATGTG-TCAATATGCTGATTCAAGGTTAGCGATA
1 TTGGACTTAAGAA----AAAGGTGCT-AATGTGCTGATTCAAGGCTAGCGACA
350022 TTGGACTTAAGAAAAAGGTGCTAATGTGCTGATTCAAGGCTAGCGACA
1 TTGGACTTAAGAAAAAGGTGCTAATGTGCTGATTCAAGGCTAGCGACA
350070 TTGGACTT-AGAAA
1 TTGGACTTAAGAAA
350083 GAGATGGTTT
Statistics
Matches: 92, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
47 5 0.05
48 40 0.43
49 9 0.10
52 38 0.41
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.28
Consensus pattern (48 bp):
TTGGACTTAAGAAAAAGGTGCTAATGTGCTGATTCAAGGCTAGCGACA
Found at i:350074 original size:100 final size:101
Alignment explanation
Indices: 349894--350078 Score: 273
Period size: 100 Copynumber: 1.8 Consensus size: 101
349884 TCAAAGATGC
* ** *
349894 CAATATGCTAATTCAAGGCCAGCAATTTTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAT
1 CAATATGCTAATTCAAGGCCAGCAATATTGGACTTAAAGAAAAAGGTGCCAATGTGCTGATTCAA
349959 GGCGAGCGACATTGGACTTAAAAATGGTAAATGTGT
66 GGCGAGCGACATTGGACTTAAAAATGGTAAATGTGT
* ** * *
349995 CAATATGCTGATTCAAGGTTAGCGATATTGGACTT-AAGAAAAAGGTGCTAATGTGCTGATTCAA
1 CAATATGCTAATTCAAGGCCAGCAATATTGGACTTAAAGAAAAAGGTGCCAATGTGCTGATTCAA
*
350059 GGCTAGCGACATTGGACTTA
66 GGCGAGCGACATTGGACTTA
350079 GAAAGAGATG
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
100 44 0.59
101 30 0.41
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (101 bp):
CAATATGCTAATTCAAGGCCAGCAATATTGGACTTAAAGAAAAAGGTGCCAATGTGCTGATTCAA
GGCGAGCGACATTGGACTTAAAAATGGTAAATGTGT
Found at i:350224 original size:33 final size:33
Alignment explanation
Indices: 350148--350330 Score: 212
Period size: 32 Copynumber: 5.6 Consensus size: 33
350138 GAAGGAGATG
* * * *
350148 CCACTAACTTGTGCGGGCTTTT-GAAAGGGTTG
1 CCACCAACTTGTGTGGGCTTTTAGAAAAGGTTA
* * *
350180 CCATCGACTTGTGTGAGCTTTTAGAAAAGGTTA
1 CCACCAACTTGTGTGGGCTTTTAGAAAAGGTTA
350213 CCACCAACTTGTGTGGGCTTTTAGAAAAGGTTA
1 CCACCAACTTGTGTGGGCTTTTAGAAAAGGTTA
350246 CCACCAACTTGTGTGGGC-TTT-GAAGAAGGTTA
1 CCACCAACTTGTGTGGGCTTTTAGAA-AAGGTTA
* * * * *
350278 TCACCGACTTGTGTGGGC-TTCAGAAAGGGTTG
1 CCACCAACTTGTGTGGGCTTTTAGAAAAGGTTA
*
350310 CCACCAGCTTGTGTGGGCTTT
1 CCACCAACTTGTGTGGGCTTT
350331 GAAGAGCTTT
Statistics
Matches: 129, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
31 3 0.02
32 65 0.50
33 61 0.47
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (33 bp):
CCACCAACTTGTGTGGGCTTTTAGAAAAGGTTA
Found at i:350275 original size:65 final size:65
Alignment explanation
Indices: 350148--350335 Score: 238
Period size: 65 Copynumber: 2.9 Consensus size: 65
350138 GAAGGAGATG
* * * * *
350148 CCACTAACTTGTGCGGGCTTTT-GAAAGGGTTGCCATCGACTTGTGTGAGCTTTTAGAA-AAGGT
1 CCACCAACTTGTGTGGGCTTTTAGAAAGGGTTGCCACCAACTTGTGTGGGC-TTT-GAAGAAGGT
350211 TA
64 TA
* *
350213 CCACCAACTTGTGTGGGCTTTTAGAAAAGGTTACCACCAACTTGTGTGGGCTTTGAAGAAGGTTA
1 CCACCAACTTGTGTGGGCTTTTAGAAAGGGTTGCCACCAACTTGTGTGGGCTTTGAAGAAGGTTA
* * * *
350278 TCACCGACTTGTGTGGGC-TTCAGAAAGGGTTGCCACCAGCTTGTGTGGGCTTTGAAGA
1 CCACCAACTTGTGTGGGCTTTTAGAAAGGGTTGCCACCAACTTGTGTGGGCTTTGAAGA
350336 GCTTTGAAGA
Statistics
Matches: 108, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
64 39 0.36
65 46 0.43
66 23 0.21
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (65 bp):
CCACCAACTTGTGTGGGCTTTTAGAAAGGGTTGCCACCAACTTGTGTGGGCTTTGAAGAAGGTTA
Found at i:350383 original size:74 final size:74
Alignment explanation
Indices: 350262--350407 Score: 247
Period size: 74 Copynumber: 2.0 Consensus size: 74
350252 ACTTGTGTGG
* *
350262 GCTTTGAAGAAGGTTATCACCGACTTGTGTGGGCTTCAGAAAGGGTTGCCACCAGCTTGTGTGGG
1 GCTTTGAAGAAGGTTACCACCGACTTGTGTGGGCTTCAGAAAGGGTTGCCACCAGCTTGTATGGG
350327 CTTTGAAGA
66 CTTTGAAGA
* * *
350336 GCTTTGAAGAAGGTTGCCATCGACTTTTGTGGGCTTCAGAAAGGGTTGCCACCAGCTTGTATGGG
1 GCTTTGAAGAAGGTTACCACCGACTTGTGTGGGCTTCAGAAAGGGTTGCCACCAGCTTGTATGGG
350401 CTTTGAA
66 CTTTGAA
350408 AAAGGTTGCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 67 1.00
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (74 bp):
GCTTTGAAGAAGGTTACCACCGACTTGTGTGGGCTTCAGAAAGGGTTGCCACCAGCTTGTATGGG
CTTTGAAGA
Found at i:350415 original size:32 final size:32
Alignment explanation
Indices: 350336--350428 Score: 82
Period size: 32 Copynumber: 2.9 Consensus size: 32
350326 GCTTTGAAGA
* * * *
350336 GCTTTGAAGAAGGTTGCCATCGACTTTTGTGG
1 GCTTTGAAAAAGGTTGCCACCGACTTGTATGG
* *
350368 GC-TTCAGAAAGGGTTGCCACC-AGCTTGTATGG
1 GCTTTGA-AAAAGGTTGCCACCGA-CTTGTATGG
* *
350400 GCTTTGAAAAAGGTTGCCACAGAGTTGTA
1 GCTTTGAAAAAGGTTGCCACCGACTTGTA
350429 GACTTAAAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
31 4 0.09
32 39 0.83
33 4 0.09
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (32 bp):
GCTTTGAAAAAGGTTGCCACCGACTTGTATGG
Found at i:350446 original size:27 final size:28
Alignment explanation
Indices: 350406--350464 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
350396 ATGGGCTTTG
*
350406 AAAAAGGTTGCCACAGAGTTGTAGACTT
1 AAAAAGGTTACCACAGAGTTGTAGACTT
* *
350434 AAAAAGG-TACCACAGAGTTGTGGATTT
1 AAAAAGGTTACCACAGAGTTGTAGACTT
350461 AAAA
1 AAAA
350465 GGAAAAGATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 21 0.75
28 7 0.25
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (28 bp):
AAAAAGGTTACCACAGAGTTGTAGACTT
Found at i:350527 original size:93 final size:92
Alignment explanation
Indices: 350429--350625 Score: 236
Period size: 93 Copynumber: 2.1 Consensus size: 92
350419 CAGAGTTGTA
* * *
350429 GACTTAAAAAGGTACCACAGAGTTGTGGATTTAAAAGGAAAAGA-TACCATGGAGTTGTGGACTT
1 GACTTAAAAAGGTACCACAGAGTTGTGGACTTAAAAGGAAAAAAGTACCATGGAGTTGTGAAC-T
* *
350493 TGGAAAGAGAAAA-GTACCATGGAGTTATG
65 T--AAAGAAAAAAGGTACCATGAAGTTATG
* * * * *
350522 GACTTAAAAGGGTGCCACGGAGTTGTGGACTTAATAGGAAAAAATGTGCCATGGAGTTGTGAACT
1 GACTTAAAAAGGTACCACAGAGTTGTGGACTTAAAAGGAAAAAA-GTACCATGGAGTTGTGAACT
* *
350587 TAAAGAAAAAAGGTGCCATGAAGTTGTG
65 TAAAGAAAAAAGGTACCATGAAGTTATG
350615 GACTTAAAAAG
1 GACTTAAAAAG
350626 AAAAGGTGTC
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
92 9 0.10
93 61 0.69
94 2 0.02
95 16 0.18
ACGTcount: A:0.38, C:0.10, G:0.28, T:0.23
Consensus pattern (92 bp):
GACTTAAAAAGGTACCACAGAGTTGTGGACTTAAAAGGAAAAAAGTACCATGGAGTTGTGAACTT
AAAGAAAAAAGGTACCATGAAGTTATG
Found at i:350530 original size:25 final size:26
Alignment explanation
Indices: 350502--350555 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
350492 TTGGAAAGAG
*
350502 AAAA-GTACCATGGAGTTATGGACTT
1 AAAAGGTACCACGGAGTTATGGACTT
* *
350527 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAA-GGTACCACGGAGTTATGGACTT
350554 AA
1 AA
350556 TAGGAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.17
27 20 0.83
ACGTcount: A:0.33, C:0.13, G:0.30, T:0.24
Consensus pattern (26 bp):
AAAAGGTACCACGGAGTTATGGACTT
Found at i:350649 original size:32 final size:32
Alignment explanation
Indices: 350435--350946 Score: 242
Period size: 32 Copynumber: 16.1 Consensus size: 32
350425 TGTAGACTTA
* * * *
350435 AAAAGGTACCACAGAGTTGTGGATTTAAAAGG
1 AAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* * * *
350467 AAAAGATACCATGGAGTTGTGGACTTTGGAAAGAG
1 AAAAGGTGCCACGGAGTTGTGGAC-TT--AAAAAG
* * *
350502 AAAA-GTACCATGGAGTTATGGACTT-AAAAG
1 AAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
350532 ----GGTGCCACGGAGTTGTGGACTTAATAGGAA-
1 AAAAGGTGCCACGGAGTTGTGGACTTAA-A--AAG
* * *
350562 AAAATGTGCCATGGAGTTGTGAACTTAAAGAA-
1 AAAAGGTGCCACGGAGTTGTGGACTTAAA-AAG
* *
350594 AAAAGGTGCCATGAAGTTGTGGACTTAAAAAG
1 AAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* *
350626 AAAAGGTGTCACGGAGTTGTGGACTTAGAGAAG
1 AAAAGGTGCCACGGAGTTGTGGACTTA-AAAAG
* ** *
350659 -AAA--TGCCACTGAGTCATGGACTTGGAAGAA-
1 AAAAGGTGCCACGGAGTTGTGGACTT--AAAAAG
* * ** ** ** *
350689 AAATGATGCCATAGAGTCATAAACTT----CG
1 AAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* * *
350717 -AAAGGTGCCATGTAGTTGTGGACTTAAAAGG
1 AAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* *
350748 AAAAATGAGAGCCACGGAGTTGTAGACTTAAAAA-
1 -AAAA-G-GTGCCACGGAGTTGTGGACTTAAAAAG
* * *
350782 AAAAGGATGCCACAGAGTTGTGGAGTTAAAAGGG
1 AAAAGG-TGCCACGGAGTTGTGGACTTAAAA-AG
* * *
350816 AAGAGGTGTCACGAAGTTGTGGACTT-AAAAG
1 AAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* * * *
350847 ---A-GTGCCATGAAGTTGTGGACTTGAAAGG
1 AAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
350875 AAAAATGGTGCCACGGAGTTGTGGACTTAAAAAG
1 -AAAA-GGTGCCACGGAGTTGTGGACTTAAAAAG
* ** *
350909 AAAAAGAGTGCTATAGAGTTGTGGACTTAAAAGG
1 -AAAAG-GTGCCACGGAGTTGTGGACTTAAAAAG
350943 AAAA
1 AAAA
350947 AGAGGGGCCA
Statistics
Matches: 373, Mismatches: 68, Indels: 77
0.72 0.13 0.15
Matches are distributed among these distances:
27 54 0.14
28 6 0.02
29 1 0.00
30 20 0.05
31 13 0.03
32 102 0.27
33 53 0.14
34 95 0.25
35 29 0.08
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.22
Consensus pattern (32 bp):
AAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
Found at i:350895 original size:34 final size:33
Alignment explanation
Indices: 350842--351105 Score: 140
Period size: 34 Copynumber: 7.8 Consensus size: 33
350832 TTGTGGACTT
* *
350842 AAAAGAGTGCCATGAAGTTGTGGACTTGAAAGGA
1 AAAAG-GTGCCACGGAGTTGTGGACTTGAAAGGA
* *
350876 AAAATGGTGCCACGGAGTTGTGGACTTAAAAAGA
1 AAAA-GGTGCCACGGAGTTGTGGACTTGAAAGGA
* ** *
350910 AAAAGAGTGCTATAGAGTTGTGGACTTAAAAGGAA
1 AAAAG-GTGCCACGGAGTTGTGGACTTGAAAGG-A
* ** *** * *
350945 AAAGAGGGGCCATAGACCAGTGGGCTTTGAAAAGAA
1 AAA-AGGTGCCACGGAGTTGTGGAC-TTG-AAAGGA
* * *
350981 AAAAAGTGCCACGGAGTTATGGACTTAAAATGGA
1 AAAAGGTGCCACGGAGTTGTGGACTTGAAA-GGA
*
351015 TAAAA--TGCCACGGAGTTGTGGACTTGGAA-GA
1 -AAAAGGTGCCACGGAGTTGTGGACTTGAAAGGA
* ** *
351046 AAAAGGATGCCGCCTAGTCGTGGACTTTG-AAGGA
1 AAAAGG-TGCCACGGAGTTGTGGAC-TTGAAAGGA
* * * * *
351080 AAATGATGCCACTGAGTCGTGAACTT
1 AAAAGGTGCCACGGAGTTGTGGACTT
351106 TAGAATGGTG
Statistics
Matches: 177, Mismatches: 40, Indels: 28
0.72 0.16 0.11
Matches are distributed among these distances:
30 4 0.02
31 2 0.01
32 2 0.01
33 55 0.31
34 68 0.38
35 34 0.19
36 8 0.05
37 4 0.02
ACGTcount: A:0.37, C:0.12, G:0.30, T:0.21
Consensus pattern (33 bp):
AAAAGGTGCCACGGAGTTGTGGACTTGAAAGGA
Found at i:351056 original size:33 final size:32
Alignment explanation
Indices: 350405--351056 Score: 195
Period size: 34 Copynumber: 20.4 Consensus size: 32
350395 TATGGGCTTT
* * *
350405 GAAAAAGGTTGCCACAGAGTTGTAGACTT---
1 GAAAAAGGATGCCACGGAGTTGTGGACTTAAA
* * *
350434 -AAAAAGG-TACCACAGAGTTGTGGATTTAAAA
1 GAAAAAGGATGCCACGGAGTTGTGGACTT-AAA
* * *
350465 GGAAAA-GATACCATGGAGTTGTGGACTTTGGAAA
1 GAAAAAGGATGCCACGGAGTTGTGGAC-TT--AAA
* * *
350499 GAGAAAA-G-TACCATGGAGTTATGGACTT---
1 GA-AAAAGGATGCCACGGAGTTGTGGACTTAAA
*
350527 --AAAAGGGTGCCACGGAGTTGTGGACTTAATA
1 GAAAAAGGATGCCACGGAGTTGTGGACTTAA-A
* * *
350558 GGAAAAAATG-TGCCATGGAGTTGTGAACTTAAA
1 -G-AAAAAGGATGCCACGGAGTTGTGGACTTAAA
* *
350591 GAAAAAAGG-TGCCATGAAGTTGTGGACTTAAA
1 G-AAAAAGGATGCCACGGAGTTGTGGACTTAAA
* * *
350623 AAGAAAAGG-TGTCACGGAGTTGTGGACTTAGA
1 GA-AAAAGGATGCCACGGAGTTGTGGACTTAAA
* * ** *
350655 GAAGAA--ATGCCACTGAGTCATGGACTTGGAA
1 GAAAAAGGATGCCACGGAGTTGTGGACTT-AAA
* ** ** ** *
350686 GAAAAATGATGCCATAGAGTCATAAACTT--C
1 GAAAAAGGATGCCACGGAGTTGTGGACTTAAA
* *
350716 G--AAAGG-TGCCATGTAGTTGTGGACTTAAAA
1 GAAAAAGGATGCCACGGAGTTGTGGACTT-AAA
*
350746 GGAAAAATGAGA-GCCACGGAGTTGTAGACTTAAA
1 -GAAAAA-G-GATGCCACGGAGTTGTGGACTTAAA
* * *
350780 AAAAAAGGATGCCACAGAGTTGTGGAGTTAAAA
1 GAAAAAGGATGCCACGGAGTTGTGGACTT-AAA
* * * *
350813 GGGAAGAGG-TGTCACGAAGTTGTGGACTT--A
1 -GAAAAAGGATGCCACGGAGTTGTGGACTTAAA
* * *
350843 -AAAGA-G-TGCCATGAAGTTGTGGACTTGAAA
1 GAAAAAGGATGCCACGGAGTTGTGGACTT-AAA
350873 GGAAAAATGG-TGCCACGGAGTTGTGGACTTAAAAA
1 -GAAAAA-GGATGCCACGGAGTTGTGGACTT--AAA
* **
350908 GAAAAA-GAGTGCTATAGAGTTGTGGACTTAAAA
1 GAAAAAGGA-TGCCACGGAGTTGTGGACTT-AAA
** ** *** *
350941 GGAAAAAGAGGGGCCATAGACCAGTGGGCTTTGAAAA
1 -GAAAAAG-GATGCCACGGAGTTGTGGAC-TT--AAA
* *
350978 GAAAAA-AAGTGCCACGGAGTTATGGACTTAAAA
1 GAAAAAGGA-TGCCACGGAGTTGTGGACTT-AAA
* *
351011 TGGATAAA--ATGCCACGGAGTTGTGGACTTGGAA
1 --GAAAAAGGATGCCACGGAGTTGTGGACTT-AAA
351044 GAAAAAGGATGCC
1 GAAAAAGGATGCC
351057 GCCTAGTCGT
Statistics
Matches: 475, Mismatches: 92, Indels: 108
0.70 0.14 0.16
Matches are distributed among these distances:
25 4 0.01
26 1 0.00
27 67 0.14
28 15 0.03
30 19 0.04
31 19 0.04
32 96 0.20
33 83 0.17
34 101 0.21
35 57 0.12
36 9 0.02
37 4 0.01
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.21
Consensus pattern (32 bp):
GAAAAAGGATGCCACGGAGTTGTGGACTTAAA
Found at i:351098 original size:33 final size:33
Alignment explanation
Indices: 351019--351106 Score: 97
Period size: 33 Copynumber: 2.7 Consensus size: 33
351009 AATGGATAAA
* * *
351019 ATGCCACGGAGTTGTGGACTTGGAAGAAAAAGG
1 ATGCCACTGAGTCGTGGACTTTGAAGAAAAAGG
* * *
351052 ATGCCGCCT-AGTCGTGGACTTTGAAGGAAAATG
1 ATGCC-ACTGAGTCGTGGACTTTGAAGAAAAAGG
*
351085 ATGCCACTGAGTCGTGAACTTT
1 ATGCCACTGAGTCGTGGACTTT
351107 AGAATGGTGC
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
32 2 0.04
33 42 0.93
34 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (33 bp):
ATGCCACTGAGTCGTGGACTTTGAAGAAAAAGG
Found at i:351117 original size:28 final size:28
Alignment explanation
Indices: 351081--351134 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
351071 TTTGAAGGAA
351081 AATGATGCCACT-GAGTCGTGAACTTTAG
1 AATGATGCCA-TAGAGTCGTGAACTTTAG
* *
351109 AATGGTGCCATAGAGTCGTGAGCTTT
1 AATGATGCCATAGAGTCGTGAACTTT
351135 TGAAAAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 22 0.96
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (28 bp):
AATGATGCCATAGAGTCGTGAACTTTAG
Found at i:352593 original size:79 final size:79
Alignment explanation
Indices: 352452--352601 Score: 203
Period size: 79 Copynumber: 1.9 Consensus size: 79
352442 TGAAGATAAC
****
352452 AACGGGGCTGGAGTATCCCCGATTATGCAAAATCGGTATTTTGAAAATAAAATCGGGGTTGGAGT
1 AACGGGGCTGGAGTATCCCCGATTATGCAAAATCGGTATTTTGAAAATAAAATCACAATTGGAGT
352517 ATCCCCTCAGAAAT
66 ATCCCCTCAGAAAT
* * * * *
352531 AACGGGGTTGGAGTATCCCCGATTGTG-AGAAATTGGTGTTTTGGAAATAAAATCACAATTGGAG
1 AACGGGGCTGGAGTATCCCCGATTATGCA-AAATCGGTATTTTGAAAATAAAATCACAATTGGAG
352595 TATCCCC
65 TATCCCC
352602 GATTGCGGTA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
78 1 0.02
79 60 0.98
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.27
Consensus pattern (79 bp):
AACGGGGCTGGAGTATCCCCGATTATGCAAAATCGGTATTTTGAAAATAAAATCACAATTGGAGT
ATCCCCTCAGAAAT
Found at i:352629 original size:51 final size:51
Alignment explanation
Indices: 352538--352634 Score: 133
Period size: 51 Copynumber: 1.9 Consensus size: 51
352528 AATAACGGGG
* * * * *
352538 TTGGAGTATCCCCGATTGTGAGAAATTGGTGTTTTGGAAATAAAATCACAA
1 TTGGAGTATCCCCGATTGCGAGAAATCGATGCTTTAGAAATAAAATCACAA
352589 TTGGAGTATCCCCGATTGCG-GTAAATCGATGCTTTAGAAATAAAAT
1 TTGGAGTATCCCCGATTGCGAG-AAATCGATGCTTTAGAAATAAAAT
352635 TAGAGTTAGA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
50 1 0.03
51 39 0.98
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (51 bp):
TTGGAGTATCCCCGATTGCGAGAAATCGATGCTTTAGAAATAAAATCACAA
Found at i:355066 original size:13 final size:13
Alignment explanation
Indices: 355048--355072 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
355038 CAATGAGCAA
355048 TGTATCGATACAT
1 TGTATCGATACAT
355061 TGTATCGATACA
1 TGTATCGATACA
355073 ATGAGCAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:355070 original size:33 final size:33
Alignment explanation
Indices: 355028--355125 Score: 187
Period size: 33 Copynumber: 3.0 Consensus size: 33
355018 CATTGTAAAA
355028 TGTATCGATACAATGAGCAATGTATCGATACAT
1 TGTATCGATACAATGAGCAATGTATCGATACAT
*
355061 TGTATCGATACAATGAGCAATGCATCGATACAT
1 TGTATCGATACAATGAGCAATGTATCGATACAT
355094 TGTATCGATACAATGAGCAATGTATCGATACA
1 TGTATCGATACAATGAGCAATGTATCGATACA
355126 ATGCAAAATG
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (33 bp):
TGTATCGATACAATGAGCAATGTATCGATACAT
Found at i:355089 original size:20 final size:20
Alignment explanation
Indices: 355006--355128 Score: 105
Period size: 20 Copynumber: 6.8 Consensus size: 20
354996 AAAATGCTTG
* *
355006 AATGTATCGATACATTGTA-A
1 AATGTATCGATACAATG-AGC
355026 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGAGC
355046 AATGTATCGATAC-AT----
1 AATGTATCGATACAATGAGC
355061 --TGTATCGATACAATGAGC
1 AATGTATCGATACAATGAGC
*
355079 AATGCATCGATAC-AT----
1 AATGTATCGATACAATGAGC
355094 --TGTATCGATACAATGAGC
1 AATGTATCGATACAATGAGC
355112 AATGTATCGATACAATG
1 AATGTATCGATACAATG
355129 CAAAATGTAT
Statistics
Matches: 84, Mismatches: 4, Indels: 30
0.71 0.03 0.25
Matches are distributed among these distances:
13 21 0.25
14 4 0.05
19 5 0.06
20 54 0.64
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACAATGAGC
Found at i:355135 original size:20 final size:20
Alignment explanation
Indices: 355006--355145 Score: 96
Period size: 20 Copynumber: 7.7 Consensus size: 20
354996 AAAATGCTTG
*
355006 AATGTATCGATACATTGTA-A
1 AATGTATCGATACAATG-AGA
*
355026 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGAGA
355046 AATGTATCGATAC-AT----
1 AATGTATCGATACAATGAGA
*
355061 --TGTATCGATACAATGAGC
1 AATGTATCGATACAATGAGA
*
355079 AATGCATCGATAC-AT----
1 AATGTATCGATACAATGAGA
*
355094 --TGTATCGATACAATGAGC
1 AATGTATCGATACAATGAGA
355112 AATGTATCGATACAATGCA-A
1 AATGTATCGATACAATG-AGA
*
355132 AATGTATTGATACA
1 AATGTATCGATACA
355146 TCTGGGTAAA
Statistics
Matches: 98, Mismatches: 6, Indels: 32
0.72 0.04 0.24
Matches are distributed among these distances:
13 21 0.21
14 4 0.04
19 5 0.05
20 67 0.68
21 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACAATGAGA
Found at i:355806 original size:40 final size:40
Alignment explanation
Indices: 355762--355863 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 40
355752 GTCCTACCTT
* *
355762 TTGAGGATAAAGG-AAAAGAGAATGAAATAG-GTCTTGCTCC
1 TTGAGGACAAAGGAAAAAGA-AAAGAAA-AGTGTCTTGCTCC
* *
355802 TTGAGGACAAAGGAAGAAAGAAAAGGAAAGTGTCTTGCTTC
1 TTGAGGACAAAGGAA-AAAGAAAAGAAAAGTGTCTTGCTCC
355843 TTGAGGACAAAGTGAAAAAGA
1 TTGAGGACAAAG-GAAAAAGA
355864 GTACGTCCTG
Statistics
Matches: 54, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
40 14 0.26
41 32 0.59
42 8 0.15
ACGTcount: A:0.43, C:0.09, G:0.28, T:0.20
Consensus pattern (40 bp):
TTGAGGACAAAGGAAAAAGAAAAGAAAAGTGTCTTGCTCC
Found at i:355929 original size:45 final size:43
Alignment explanation
Indices: 355880--356103 Score: 195
Period size: 43 Copynumber: 5.1 Consensus size: 43
355870 CCTGCTTCTC
* * *
355880 GAGGACAAAGGAAAAAAAAGGAAAACAAAATGCGTCCTATTCTTT
1 GAGGACAAAGG--AAAAAAGGAAAATAAAGTGCGTCCTACTCTTT
* * *
355925 GAGGATAAAGG-AAAAAGAAAAATAAAGTGCGTCCTGCTCTTT
1 GAGGACAAAGGAAAAAAGGAAAATAAAGTGCGTCCTACTCTTT
* * * ** *
355967 GAGGACAGAGGAGAAAAGGAAAATAAGGCACGTCCTGCTCTTT
1 GAGGACAAAGGAAAAAAGGAAAATAAAGTGCGTCCTACTCTTT
*
356010 GAGGACAAAAGGGAAAAGAAGG-AAATGAAGTGCGTCCTACTCTTT
1 GAGGAC-AAA-GGAAAA-AAGGAAAATAAAGTGCGTCCTACTCTTT
* * * * *
356055 GAGGAC-AA-GAAGGAAGAGGAAAATAAAATGCATCATGCTCTTT
1 GAGGACAAAGGAA--AAAAGGAAAATAAAGTGCGTCCTACTCTTT
356098 GAGGAC
1 GAGGAC
356104 TCGGAGGTGC
Statistics
Matches: 146, Mismatches: 26, Indels: 16
0.78 0.14 0.09
Matches are distributed among these distances:
41 3 0.02
42 38 0.26
43 60 0.41
44 2 0.01
45 39 0.27
46 4 0.03
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.18
Consensus pattern (43 bp):
GAGGACAAAGGAAAAAAGGAAAATAAAGTGCGTCCTACTCTTT
Found at i:356075 original size:88 final size:85
Alignment explanation
Indices: 355920--356080 Score: 225
Period size: 88 Copynumber: 1.9 Consensus size: 85
355910 TGCGTCCTAT
* * *
355920 TCTTTGAGGATAAAGGAAAAAGAAAAATAAAGTGCGTCCTGCTCTTTGAGGACAGAGGAGAAAAG
1 TCTTTGAGGAAAAAGGAAAAAGAAAAATAAAGTGCGTCCTACTCTTTGAGGACAGAAGAGAAAAG
355985 GAAAATAAGGCACGTCCTGC
66 GAAAATAAGGCACGTCCTGC
* *
356005 TCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTGAGGACAAGAAG-GA
1 TCTTTGAGGA-AAAAGGAAAAAGAA--AAATAAAGTGCGTCCTACTCTTTGAGGAC-AGAAGAGA
*
356069 AGAGGAAAATAA
62 AAAGGAAAATAA
356081 AATGCATCAT
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
85 10 0.15
86 12 0.18
88 40 0.61
89 4 0.06
ACGTcount: A:0.42, C:0.12, G:0.28, T:0.18
Consensus pattern (85 bp):
TCTTTGAGGAAAAAGGAAAAAGAAAAATAAAGTGCGTCCTACTCTTTGAGGACAGAAGAGAAAAG
GAAAATAAGGCACGTCCTGC
Found at i:356094 original size:88 final size:85
Alignment explanation
Indices: 355920--356103 Score: 221
Period size: 88 Copynumber: 2.1 Consensus size: 85
355910 TGCGTCCTAT
* * *
355920 TCTTTGAGGA-TAAAGGAAAAAGAAAAATAAAGTGCGTCCTGCTCTTTGAGGACAGAGGAGAAAA
1 TCTTTGAGGACAAAAGGAAAAAGAAAAATAAAGTGCGTCCTACTCTTTGAGGACAGAAGAGAAAA
*
355984 GGAAAATAAGGCACGTCCTGC
66 GGAAAATAAGGCAC-TCATGC
* *
356005 TCTTTGAGGACAAAAGGGAAAAGAAGGAAATGAAGTGCGTCCTACTCTTTGAGGACAAGAAG-GA
1 TCTTTGAGGACAAAAGGAAAAAGAA--AAATAAAGTGCGTCCTACTCTTTGAGGAC-AGAAGAGA
* *
356069 AGAGGAAAATAAAATGCA-TCATGC
63 AAAGGAAAAT--AAGGCACTCATGC
356093 TCTTTGAGGAC
1 TCTTTGAGGAC
356104 TCGGAGGTGC
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
85 10 0.12
86 12 0.14
88 54 0.64
89 4 0.05
90 5 0.06
ACGTcount: A:0.40, C:0.14, G:0.27, T:0.20
Consensus pattern (85 bp):
TCTTTGAGGACAAAAGGAAAAAGAAAAATAAAGTGCGTCCTACTCTTTGAGGACAGAAGAGAAAA
GGAAAATAAGGCACTCATGC
Found at i:356234 original size:60 final size:60
Alignment explanation
Indices: 356090--357029 Score: 1019
Period size: 60 Copynumber: 15.3 Consensus size: 60
356080 AAATGCATCA
** * * *
356090 TGCTCTTTGAGGACT-CGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAGACATCC
1 TGCTCTTTGAGGACTAAAG-GGTGCCACCAACTTGTGTGGGCTTT--AAAG-GAAAAGGCGTCC
** * * * *
356153 TGCTCTTTGAGGACTGGAGGGTGCCACCAACTTGTGTGGGATTTGAAGGAGAAGACGTCC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGAAAAGGCGTCC
* * *
356213 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCGTTAAAAGGAAAAGGCATTC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGC-TTTAAAGGAAAAGGCGTCC
* * * *
356274 TGCTTTTTGAGGACTAAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAGGCATCT
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT--AAAG-GAAAAGGCGTCC
* * * * *
356336 TGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGTGGGCTTTGAAGGAGAAGACGTCC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGAAAAGGCGTCC
* * * * *
356396 TGCTCTTTGAGGACCAAAGGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAACGCATCT
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT-AAAGGAAAAGGCGTCC
* * *
356457 TGCTCTTTAAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT-AAAGGAAAAGGCGTCC
* * * * *
356518 TGCTCTTTGAGGACTACA-GGTGCCACCAACTTGTATGGGCTTTAAAAAGAAAAAAGACATCC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT--AAAG-GAAAAGGCGTCC
** * * * *
356580 TGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGTTTTGAAGGAGAAGGCGTCC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGAAAAGGCGTCC
*
356640 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT-AAAGGAAAAGGCGTCC
* *
356701 TACTCTTTGAGGACTAAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAAGGCGTCC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT--AAAG--GAAAAGGCGTCC
* ** * *
356764 TTCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTGAAA-GAGAAGGCGTCC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT-AAAGGAAAAGGCGTCC
* * * *
356824 TGCTTTTTGAGGACTAAAAGGTACCACCAACTTGTGTGGGCTTTAAAGGAAAAGGCATCC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGAAAAGGCGTCC
* * * * *
356884 TACTCTTTGAGGACTAAA-GGCGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTGTCC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT--AAAGGAAAAGGCGTCC
** ** * **
356945 TGCTCTTTGAGGACTGGAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAAGGTATCC
1 TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT--AAAG-GAAAAGGCGTCC
357008 TGCTCTTTGAGGACTGAAAGGG
1 TGCTCTTTGAGGACT-AAAGGG
357030 CTAAAAGAGG
Statistics
Matches: 752, Mismatches: 104, Indels: 41
0.84 0.12 0.05
Matches are distributed among these distances:
59 27 0.04
60 285 0.38
61 192 0.26
62 80 0.11
63 139 0.18
64 29 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (60 bp):
TGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAGGAAAAGGCGTCC
Found at i:356417 original size:183 final size:181
Alignment explanation
Indices: 356079--357028 Score: 1172
Period size: 183 Copynumber: 5.2 Consensus size: 181
356069 AGAGGAAAAT
* * *** *
356079 AAAATGCATCATGCTCTTTGAGGACTCGGAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAA
1 AAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GAA
* * * * * *
356144 AAGACATCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTTGTGTGGGATTTGAAGGAGAAGAC
64 AAGGCATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAGAAAAAGAC
** * *
356209 GTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCGTTAAAAGG
128 GTCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGG
* * *
356263 AAAAGGCATTCTGCTTTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAA
1 AAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GAA
* * * * *
356327 AAGGCATCTTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGTGGGCTTTGAAGGAGAAGAC
64 AAGGCATCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAGAAAAAGAC
*** * *
356392 GTCCTGCTCTTTGAGGACCAAAGGGTGCCACCAACTTGTATGGGCTTTAAAAGG
128 GTCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGG
* * *
356446 AAAACGCATCTTGCTCTTTAAGGACT-AAAGAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
1 AAAAGGCATCCTGCTCTTTGAGGACTAAAAG-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
* * *
356510 AGGCATCCTGCTCTTTGAGGACTACAGGTGCCACCAACTTGTATGGGCTTTAAAAAGAAAAAAGA
65 AGGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT--GAAG-AAAAAGA
* **
356575 CATCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGG-TTTTGAAGG
127 CGTCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGG
* * *
356629 AGAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
1 AAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * *
356694 GGCATCCTACTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAAGG
66 GGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTT--GAAG--AAAAAGA
* *
356759 CGTCCTTCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTGAAA-G
127 CGTCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGG
* * * *
356813 AGAAGGCGTCCTGCTTTTTGAGGACTAAAAGGTACCACCAACTTGTGTGGGCTTT-AAAGGAAAA
1 AAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
* * * **
356877 GGCATCCTACTCTTTGAGGACTAAAGGCGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTG
66 GGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTG--AAGAAAAAGACG
* *
356942 TCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAA
129 TCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTT-AAAAG-G
* *
356997 AAAAGGTATCCTGCTCTTTGAGGACTGAAAGG
1 AAAAGGCATCCTGCTCTTTGAGGACTAAAAGG
357029 GCTAAAAGAG
Statistics
Matches: 687, Mismatches: 66, Indels: 26
0.88 0.08 0.03
Matches are distributed among these distances:
181 76 0.11
182 29 0.04
183 354 0.52
184 223 0.32
185 5 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (181 bp):
AAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAA
GGCATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAGAAAAAGACGTC
CTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGG
Found at i:356529 original size:244 final size:247
Alignment explanation
Indices: 356079--357028 Score: 1174
Period size: 244 Copynumber: 3.9 Consensus size: 247
356069 AGAGGAAAAT
* * * * *
356079 AAAATGCATCATGCTCTTTGAGGACTCG-GAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAA
1 AAAAGGCATCCTGCTCTTTGAGGACTAGAG-GGTGCCACCAACTCGTGTGGGCTTT--AAAG-GA
** * *
356143 AAAGACATCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTTGTGTGGGATTT-GAAGGAGAAG
62 AAAGACATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAGGA-AA-
* *
356207 ACG--TCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCGTT-AAAAG-GAAAAG
125 ACGCATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAG
* *
356268 GCATTCTGCTTTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAA
190 GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAA
* * *
356325 AAAAGGCATCTTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGTGGGCTTTGAAGGAGAAG
1 AAAAGGCATCCTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGTGGGCTTTAAAGGAAAAG
* * *
356390 ACGTCCTGCTCTTTGAGGACCAAAGGGTGCCACCAACTTGTATGGGCTTTAAAAGGAAAACGCAT
66 ACATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAACGCAT
* * * *
356455 CTTGCTCTTTAAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GAAAAGGCATCC
131 CCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAGGCATCC
* *
356518 TGCTCTTTGAGGACT-ACAGGTGCCACCAACTTGTATGGGCTTTAAAAAGAA
196 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAA
* * * * *
356569 AAAAGACATCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGTTTTGAAGGAGAAG
1 AAAAGGCATCCTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGTGGGCTTTAAAGGAAAAG
* * *
356634 GCGTCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
66 ACATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAACGCAT
* *
356699 CCTACTCTTTGAGGACTAAA-GGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAAGGCGTC
131 CCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAAG-AAAAAAGGCATC
* * * * *
356763 CTTCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTT-GAAAG--
195 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAA
* * * * * * *
356813 AGAAGGCGTCCTGCTTTTTGAGGACTAAAAGGTACCACCAACTTGTGTGGGCTTTAAAGGAAAAG
1 AAAAGGCATCCTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGTGGGCTTTAAAGGAAAAG
* * * * * * **
356878 GCATCCTACTCTTTGAGGACTAAA-GGCGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTG
66 ACATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAACGCA
** ** * *
356942 TCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAAGGTATC
130 TCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAGGCATC
357007 CTGCTCTTTGAGGACTGAAAGG
195 CTGCTCTTTGAGGACTGAAAGG
357029 GCTAAAAGAG
Statistics
Matches: 621, Mismatches: 73, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
242 3 0.00
243 97 0.16
244 392 0.63
245 28 0.05
246 77 0.12
247 24 0.04
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (247 bp):
AAAAGGCATCCTGCTCTTTGAGGACTAGAGGGTGCCACCAACTCGTGTGGGCTTTAAAGGAAAAG
ACATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAACGCAT
CCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAGGCATCC
TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAA
Found at i:365748 original size:20 final size:19
Alignment explanation
Indices: 365723--365796 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
365713 AAAATGCCTG
* *
365723 AATGTATCAATACATTGTAA
1 AATGTATCGATACAATG-AA
*
365743 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGA-A
365763 AATGTATCGATACAATGCAA
1 AATGTATCGATACAATG-AA
365783 AATGTATCGATACA
1 AATGTATCGATACA
365797 TCTGGGTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:370094 original size:20 final size:20
Alignment explanation
Indices: 370066--370136 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
370056 AAAAAGAATA
*
370066 TATCGATACATTGAAAAATG
1 TATCGATACATTAAAAAATG
* * * *
370086 TATCTATACATTCATACATG
1 TATCGATACATTAAAAAATG
370106 TATCGATACATTAAAAAATG
1 TATCGATACATTAAAAAATG
370126 TATCGATACAT
1 TATCGATACAT
370137 CTAGGTAAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (20 bp):
TATCGATACATTAAAAAATG
Found at i:371128 original size:20 final size:20
Alignment explanation
Indices: 371103--371196 Score: 127
Period size: 20 Copynumber: 4.7 Consensus size: 20
371093 ATTTACCTGC
*
371103 ATGTATCGATATATTGAATA
1 ATGTATCGATACATTGAATA
371123 ATGTATCGATACATT-AGATA
1 ATGTATCGATACATTGA-ATA
* *
371143 ATGTATCGATGCATTGGATA
1 ATGTATCGATACATTGAATA
* *
371163 ATGTATCGATGCATTGGATA
1 ATGTATCGATACATTGAATA
371183 ATGTATCGATACAT
1 ATGTATCGATACAT
371197 CTAGGTAAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
19 1 0.01
20 67 0.99
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGAATA
Found at i:371147 original size:40 final size:40
Alignment explanation
Indices: 371103--371196 Score: 143
Period size: 40 Copynumber: 2.4 Consensus size: 40
371093 ATTTACCTGC
*
371103 ATGTATCGATATATTGAATAATGTATCGATACATTAGATA
1 ATGTATCGATACATTGAATAATGTATCGATACATTAGATA
* * * *
371143 ATGTATCGATGCATTGGATAATGTATCGATGCATTGGATA
1 ATGTATCGATACATTGAATAATGTATCGATACATTAGATA
371183 ATGTATCGATACAT
1 ATGTATCGATACAT
371197 CTAGGTAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 48 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (40 bp):
ATGTATCGATACATTGAATAATGTATCGATACATTAGATA
Found at i:374742 original size:8 final size:8
Alignment explanation
Indices: 374726--374796 Score: 52
Period size: 8 Copynumber: 8.1 Consensus size: 8
374716 TCATCATAGG
374726 ATTTAAAA
1 ATTTAAAA
374734 ATTTTAAAA
1 A-TTTAAAA
**
374743 ATAAAAATA
1 ATTTAAA-A
*
374752 ATTAAAAA
1 ATTTAAAA
*
374760 ATATAAAA
1 ATTTAAAA
374768 ATATTAGAAAA
1 AT-TT--AAAA
374779 ATTTTAAAA
1 A-TTTAAAA
374788 ATTTAAAA
1 ATTTAAAA
374796 A
1 A
374797 CTAAATAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
8 22 0.43
9 21 0.41
11 7 0.14
12 1 0.02
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (8 bp):
ATTTAAAA
Found at i:374767 original size:19 final size:18
Alignment explanation
Indices: 374739--374796 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
374729 TAAAAATTTT
374739 AAAA-ATAAAAATAATTAA
1 AAAATATAAAAAT-ATTAA
374757 AAAATATAAAAATATTAGA
1 AAAATATAAAAATATTA-A
*
374776 AAAATTTTAAAAAT-TTAA
1 AAAA-TATAAAAATATTAA
374794 AAA
1 AAA
374797 CTAAATAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
18 12 0.33
19 16 0.44
20 8 0.22
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.28
Consensus pattern (18 bp):
AAAATATAAAAATATTAA
Found at i:375597 original size:19 final size:17
Alignment explanation
Indices: 375575--375619 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
375565 TTAAATATAT
375575 TTATTTATAAAATTATTTA
1 TTATTTATAAAA-T-TTTA
*
375594 TTATTTTTAAAATTTTA
1 TTATTTATAAAATTTTA
375611 TT-TTTATAA
1 TTATTTATAA
375620 TCTTAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.25
17 6 0.25
18 1 0.04
19 11 0.46
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTATTTATAAAATTTTA
Found at i:375613 original size:14 final size:15
Alignment explanation
Indices: 375594--375632 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
375584 AAATTATTTA
375594 TTATTTTTAAAAT-T
1 TTATTTTTAAAATCT
*
375608 TTATTTTTATAATCT
1 TTATTTTTAAAATCT
*
375623 TAATTTTTAA
1 TTATTTTTAA
375633 TCAGCATAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (15 bp):
TTATTTTTAAAATCT
Found at i:375984 original size:26 final size:26
Alignment explanation
Indices: 375953--376019 Score: 64
Period size: 28 Copynumber: 2.5 Consensus size: 26
375943 AAATTGAATA
* *
375953 TTTATATTTATATTTTGTTT-ATATAT
1 TTTATATTTATATTATGTTTAAGAT-T
*
375979 TTTATAAATTATAATTATGTTTAAGATT
1 TTTAT-ATTTAT-ATTATGTTTAAGATT
376007 TTTATATTATATA
1 TTTATATT-TATA
376020 AATTTTGATA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
26 5 0.15
27 8 0.24
28 17 0.52
29 3 0.09
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.61
Consensus pattern (26 bp):
TTTATATTTATATTATGTTTAAGATT
Found at i:375991 original size:33 final size:35
Alignment explanation
Indices: 375954--376023 Score: 81
Period size: 35 Copynumber: 2.1 Consensus size: 35
375944 AATTGAATAT
* * *
375954 TTATATTTATATTT-TG-TTTATATATTTTATAAA
1 TTATAATTATATTTAAGATTTATATATTATATAAA
* *
375987 TTATAATTATGTTTAAGATTTTTATATTATATAAA
1 TTATAATTATATTTAAGATTTATATATTATATAAA
376022 TT
1 TT
376024 TTGATATATT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
33 12 0.40
34 1 0.03
35 17 0.57
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (35 bp):
TTATAATTATATTTAAGATTTATATATTATATAAA
Found at i:376001 original size:28 final size:26
Alignment explanation
Indices: 375960--376017 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
375950 ATATTTATAT
* *
375960 TTAT-ATTTTGTTTATATATTTTATAAA
1 TTATAATTATGTTTA-AGATTTT-TAAA
*
375987 TTATAATTATGTTTAAGATTTTTATA
1 TTATAATTATGTTTAAGATTTTTAAA
376013 TTATA
1 TTATA
376018 TAAATTTTGA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 8 0.30
27 10 0.37
28 9 0.33
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.60
Consensus pattern (26 bp):
TTATAATTATGTTTAAGATTTTTAAA
Found at i:376030 original size:17 final size:16
Alignment explanation
Indices: 376006--376110 Score: 61
Period size: 16 Copynumber: 6.3 Consensus size: 16
375996 TGTTTAAGAT
376006 TTTTATATTATATAAA
1 TTTTATATTATATAAA
376022 TTTTGATA-TAT-TAATA
1 TTTT-ATATTATATAA-A
* * *
376038 ATTTATATCATATAGA
1 TTTTATATTATATAAA
* **
376054 TTTTAAGATTATATATT
1 TTTT-ATATTATATAAA
* *
376071 TGTATTATATTTATATTAT
1 T-T-TTATA-TTATATAAA
*
376090 TTTTATATTATATATA
1 TTTTATATTATATAAA
376106 TTTTA
1 TTTTA
376111 ATAAACTATT
Statistics
Matches: 67, Mismatches: 14, Indels: 16
0.69 0.14 0.16
Matches are distributed among these distances:
15 6 0.09
16 28 0.42
17 19 0.28
18 4 0.06
19 10 0.15
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (16 bp):
TTTTATATTATATAAA
Found at i:376081 original size:11 final size:11
Alignment explanation
Indices: 376065--376102 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
376055 TTTAAGATTA
*
376065 TATATTTGTAT
1 TATATTTATAT
376076 TATATTTATAT
1 TATATTTATAT
*
376087 TATTTTTATAT
1 TATATTTATAT
376098 TATAT
1 TATAT
376103 ATATTTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (11 bp):
TATATTTATAT
Found at i:376128 original size:21 final size:20
Alignment explanation
Indices: 376103--376142 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
376093 TATATTATAT
*
376103 ATATTTTAATAAACTATTAAC
1 ATATTTCAA-AAACTATTAAC
*
376124 ATATTTCAAATACTATTAA
1 ATATTTCAAAAACTATTAA
376143 AATTTAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.42
Consensus pattern (20 bp):
ATATTTCAAAAACTATTAAC
Found at i:376568 original size:21 final size:21
Alignment explanation
Indices: 376529--376577 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
376519 CATTCTTGTC
376529 TTTTAAAATTACTATTATAT-
1 TTTTAAAATTACTATTATATG
*
376549 TTCTTAAAATATTCTA-TATATG
1 TT-TTAAAAT-TACTATTATATG
376571 TTTTAAA
1 TTTTAAA
376578 TTTTTAGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 2 0.08
21 17 0.68
22 6 0.24
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.53
Consensus pattern (21 bp):
TTTTAAAATTACTATTATATG
Found at i:376651 original size:8 final size:8
Alignment explanation
Indices: 376638--376670 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
376628 TTATGTATGT
376638 TTTATATA
1 TTTATATA
376646 TTTATATA
1 TTTATATA
376654 -TTATATA
1 TTTATATA
*
376661 TATATATA
1 TTTATATA
376669 TT
1 TT
376671 AAAATTATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TTTATATA
Found at i:376659 original size:15 final size:15
Alignment explanation
Indices: 376639--376671 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
376629 TATGTATGTT
*
376639 TTATATATTTATATA
1 TTATATATATATATA
376654 TTATATATATATATA
1 TTATATATATATATA
376669 TTA
1 TTA
376672 AAATTATGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATATATATATATA
Found at i:378150 original size:12 final size:12
Alignment explanation
Indices: 378133--378157 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
378123 ATTTGTGTTA
378133 AGTATTTATGTC
1 AGTATTTATGTC
378145 AGTATTTATGTC
1 AGTATTTATGTC
378157 A
1 A
378158 AAAGTATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.08, G:0.16, T:0.48
Consensus pattern (12 bp):
AGTATTTATGTC
Found at i:378169 original size:15 final size:15
Alignment explanation
Indices: 378145--378212 Score: 77
Period size: 15 Copynumber: 4.6 Consensus size: 15
378135 TATTTATGTC
*
378145 AGTATTTATGTCAAA
1 AGTATATATGTCAAA
378160 AGTATATATGTCAAA
1 AGTATATATGTCAAA
**
378175 A-TACCTATGTCAAA
1 AGTATATATGTCAAA
*
378189 AATACT-TATGTCAAA
1 AGTA-TATATGTCAAA
378204 AGTATATAT
1 AGTATATAT
378213 ATATCAAAAT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
14 13 0.29
15 32 0.71
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.35
Consensus pattern (15 bp):
AGTATATATGTCAAA
Found at i:379054 original size:20 final size:19
Alignment explanation
Indices: 379022--379060 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
379012 TAATACTTAT
*
379022 AAAAAATATATATTATAAA
1 AAAAAATAAATATTATAAA
*
379041 AAAATAATAAATATTTTAAA
1 AAAA-AATAAATATTATAAA
379061 CACGTCTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAAATAAATATTATAAA
Found at i:379539 original size:18 final size:18
Alignment explanation
Indices: 379518--379556 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
379508 TATATATATA
379518 TTATATGAAGTATAAATT
1 TTATATGAAGTATAAATT
379536 TTATATGAAGTATAAATT
1 TTATATGAAGTATAAATT
379554 TTA
1 TTA
379557 AAAGTATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (18 bp):
TTATATGAAGTATAAATT
Found at i:379612 original size:2 final size:2
Alignment explanation
Indices: 379605--379641 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
379595 TTTAACACTA
379605 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
379642 AATGTTAATG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:381810 original size:31 final size:30
Alignment explanation
Indices: 381749--381812 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
381739 TTCTTTTTTT
** *
381749 TTTAATTATCAAAGTATATATATATATATA
1 TTTAATTATCAAAAAATATATACATATATA
381779 TTTAATTATCAAAAAAATATATACACT-TATA
1 TTTAATTATC-AAAAAATATATACA-TATATA
381810 TTT
1 TTT
381813 CACCTTTCAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
30 10 0.34
31 18 0.62
32 1 0.03
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (30 bp):
TTTAATTATCAAAAAATATATACATATATA
Found at i:388781 original size:15 final size:15
Alignment explanation
Indices: 388740--388789 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
388730 AGTTACGATA
*
388740 TTGGTGGCCAAAGTG
1 TTGGTGGCCAAGGTG
**
388755 TTAATGGCCAAGGTG
1 TTGGTGGCCAAGGTG
*
388770 TTGGTGGTCAAGGTG
1 TTGGTGGCCAAGGTG
388785 TTGGT
1 TTGGT
388790 TAGACCAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.18, C:0.10, G:0.40, T:0.32
Consensus pattern (15 bp):
TTGGTGGCCAAGGTG
Found at i:391479 original size:20 final size:20
Alignment explanation
Indices: 391454--391525 Score: 73
Period size: 20 Copynumber: 3.9 Consensus size: 20
391444 ACTACTAAGA
391454 AAATGTATCGATACATTACT
1 AAATGTATCGATACATTACT
391474 AAATGTATCGATACA--ACT
1 AAATGTATCGATACATTACT
*
391492 ---TGTATCGATACATTTCT
1 AAATGTATCGATACATTACT
* * *
391509 CATTGTATCAATACATT
1 AAATGTATCGATACATT
391526 CTGGGTTTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
15 12 0.27
17 2 0.04
18 3 0.07
20 28 0.62
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (20 bp):
AAATGTATCGATACATTACT
Found at i:391503 original size:35 final size:35
Alignment explanation
Indices: 391457--391523 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
391447 ACTAAGAAAA
*
391457 TGTATCGATACATTACTAAATGTATCGATACAACT
1 TGTATCGATACATTACTAAATGTATCAATACAACT
* * *
391492 TGTATCGATACATTTCTCATTGTATCAATACA
1 TGTATCGATACATTACTAAATGTATCAATACA
391524 TTCTGGGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.37
Consensus pattern (35 bp):
TGTATCGATACATTACTAAATGTATCAATACAACT
Found at i:396901 original size:20 final size:20
Alignment explanation
Indices: 396876--397004 Score: 71
Period size: 20 Copynumber: 6.8 Consensus size: 20
396866 ATTTGCCTGC
396876 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAGA
396896 ATGTATCGATACATTTG--G-
1 ATGTATCGATACA-TTGAAGA
* * *
396914 --GTCT-AAAAC-TT-A-GA
1 ATGTATCGATACATTGAAGA
*
396928 ATGTATCGATACAAT-AAGAA
1 ATGTATCGATACATTGAAG-A
* *
396948 ATGCATCGATACAATTGTAAGC
1 ATGTATCGATAC-ATTG-AAGA
* **
396970 ATGTATCGATACATTTATTA
1 ATGTATCGATACATTGAAGA
396990 ATGTATCGATACATT
1 ATGTATCGATACATT
397005 TCCTTGGCAG
Statistics
Matches: 82, Mismatches: 15, Indels: 24
0.68 0.12 0.20
Matches are distributed among these distances:
13 3 0.04
15 3 0.04
16 6 0.07
17 3 0.04
18 2 0.02
19 2 0.02
20 41 0.50
21 8 0.10
22 11 0.13
23 3 0.04
ACGTcount: A:0.38, C:0.12, G:0.16, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGAAGA
Found at i:404532 original size:28 final size:28
Alignment explanation
Indices: 404500--404564 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
404490 ATCGGGATTT
* *
404500 GAGTATCCCC-TCGGAAGTAACGGGGTTG
1 GAGTATCCCCAT-GGAAATAACGAGGTTG
*
404528 GAGTATCCCCGATTGAAATAACGAGGTTG
1 GAGTATCCCC-ATGGAAATAACGAGGTTG
404557 GAGTATCC
1 GAGTATCC
404565 TCGATTGTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 10 0.31
29 21 0.66
30 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (28 bp):
GAGTATCCCCATGGAAATAACGAGGTTG
Found at i:404612 original size:52 final size:51
Alignment explanation
Indices: 404553--404722 Score: 164
Period size: 52 Copynumber: 3.3 Consensus size: 51
404543 AAATAACGAG
*
404553 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGAAAATAAAA-CGGA
** * ** *
404605 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGAAAATAAAACGGA
* * * ** *
404656 GATTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAG-CGATAAAACCGGG
1 G-TTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTGAAAATAAAA-CGGA
404709 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
404723 TCGGAGATAA
Statistics
Matches: 95, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
51 4 0.04
52 75 0.79
53 16 0.17
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGAAAATAAAACGGA
Found at i:404767 original size:185 final size:184
Alignment explanation
Indices: 404520--404864 Score: 516
Period size: 185 Copynumber: 1.9 Consensus size: 184
404510 TCGGAAGTAA
* *
404520 CGGGGTTGGAGTATCCCCGATTGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGT-
1 CGGGGTTGGAGTATCCCC-ATGGAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTGGTG
* *
404584 ATTTTTGAAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATA
65 ATTTTTGAAAATAAAATCGGAGTTAGAGTATCCCCGATTAAA-GAAAATTAGCGTTTTGAAAATA
*
404649 AAACC-GAGATTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAAC
129 AAACCGGAG-TTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAAC
* *
404705 CGGGGTTGGAGTATCCCC-TCGGAGATAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGT
1 CGGGGTTGGAGTATCCCCAT-GGAAATAACGAGGTTGGAGTATCCCCGATTGTGAA-AAATTGGT
* * * *
404769 GTTTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATA
64 GATTTTTGAAAATAAAATCGGAGTTAGAGTATCCCCGATTAAAGAAAATTAGCGTTTTGAAAATA
*
404834 AAATCGGAGTTGGAATATCCCCGATTGTGGA
129 AAACCGGAGTTGGAATATCCCCGATTGTGGA
404865 GAATTGAGAA
Statistics
Matches: 144, Mismatches: 12, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
183 1 0.01
184 31 0.22
185 71 0.49
186 41 0.28
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.29
Consensus pattern (184 bp):
CGGGGTTGGAGTATCCCCATGGAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGA
TTTTTGAAAATAAAATCGGAGTTAGAGTATCCCCGATTAAAGAAAATTAGCGTTTTGAAAATAAA
ACCGGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAAC
Found at i:404837 original size:51 final size:53
Alignment explanation
Indices: 404741--404859 Score: 154
Period size: 51 Copynumber: 2.3 Consensus size: 53
404731 AACGGGGTTG
* * *
404741 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGAGTTA
*
404795 GAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
*
404846 GAATATCCCCGATT
1 GAGTATCCCCGATT
404860 GTGGAGAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
51 34 0.58
52 2 0.03
53 8 0.14
54 15 0.25
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.32
Consensus pattern (53 bp):
GAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
Found at i:404854 original size:133 final size:132
Alignment explanation
Indices: 404605--404855 Score: 305
Period size: 133 Copynumber: 1.9 Consensus size: 132
404595 TAAAATCGGA
*
404605 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGAGATTGGAGTATCCC
1 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGAGATTAGAGTATCCC
* * ** * *
404670 CGATTGTGGAAAAATTAGTGTTTTAGCGATAAAACCGGGGTTGGAGTATCCCCTCGGAGATAACG
66 CGATTATAGAAAAATTAGTGTTTTAGAAATAAAACCGGAGTTGGAATATCCCCTCGGAGATAACG
404735 GG
131 GG
* * * *
404737 GTTGGAGTATCCCCGATTGTGAA-G-AAATTGGTGTTTTTTGGAAATAAAATCG-GAGTTAGAGT
1 GTTGGAGTATCCCCGA-T-TAAAGGAAAATTGGCG--TTTTGAAAATAAAACCGAGA-TTAGAGT
*
404799 ATCCCCGATTATAG-AAAATTAGTGTTTT-GAAAATAAAATCGGAGTTGGAATATCCCC
61 ATCCCCGATTATAGAAAAATTAGTGTTTTAG-AAATAAAACCGGAGTTGGAATATCCCC
404856 GATTGTGGAG
Statistics
Matches: 101, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
132 25 0.25
133 40 0.40
134 36 0.36
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.29
Consensus pattern (132 bp):
GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGAGATTAGAGTATCCC
CGATTATAGAAAAATTAGTGTTTTAGAAATAAAACCGGAGTTGGAATATCCCCTCGGAGATAACG
GG
Found at i:407236 original size:33 final size:33
Alignment explanation
Indices: 407194--407258 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
407184 AAAATTTCCA
***
407194 AATGTATCGATACAAAGATCCATGTATCGATAT
1 AATGTATCGATACAAAGAAAAATGTATCGATAT
*
407227 AATGTATCGATACACAGAAAAATGTATCGATA
1 AATGTATCGATACAAAGAAAAATGTATCGATA
407259 CATTTCCTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAT
Found at i:407320 original size:13 final size:13
Alignment explanation
Indices: 407302--407326 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
407292 ACAATACTTA
407302 TGTATCGATACAT
1 TGTATCGATACAT
407315 TGTATCGATACA
1 TGTATCGATACA
407327 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:407325 original size:32 final size:32
Alignment explanation
Indices: 407283--407345 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
407273 TAGCTAATTA
* *
407283 TGTATTGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
407315 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
407346 AATTGTTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:407339 original size:19 final size:19
Alignment explanation
Indices: 407280--407347 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
407270 CAGTAGCTAA
* *
407280 TTATGTATTGATACAATAC
1 TTATGTATCGATACAAAAC
407299 TTATGTATCGATAC---A-
1 TTATGTATCGATACAAAAC
407314 -T-TGTATCGATACAAAAC
1 TTATGTATCGATACAAAAC
407331 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
407348 TTGTTGAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 1 0.02
19 27 0.64
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (19 bp):
TTATGTATCGATACAAAAC
Found at i:407427 original size:21 final size:21
Alignment explanation
Indices: 407403--407459 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
407393 CAAATGTAGG
407403 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
407424 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
407445 ATGTATCGATACATT
1 ATGTATCGATACATT
407460 TGGATAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:408223 original size:55 final size:55
Alignment explanation
Indices: 408138--408828 Score: 869
Period size: 55 Copynumber: 12.3 Consensus size: 55
408128 ATAAAGTGTA
* * * * * * *
408138 TCCTGCTCATTGAGGAGTAAAAAGTACCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
408193 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* * *
408248 TCCTACTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
408303 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * **
408358 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTATGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* * *
408419 TCCTGCTCTTTGAGAACT-AAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
* *
408478 TCCCGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAATGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
*
408537 TCCCGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
408591 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
408646 TCCTGCTCTTTGAGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
408701 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
408756 TTCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
408811 TCCTACTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
408829 AAAAAGCGGA
Statistics
Matches: 577, Mismatches: 38, Indels: 42
0.88 0.06 0.06
Matches are distributed among these distances:
54 35 0.06
55 374 0.65
56 18 0.03
59 101 0.18
60 26 0.05
61 17 0.03
64 6 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:408325 original size:26 final size:26
Alignment explanation
Indices: 408296--408383 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 26
408286 GTGGGCTTTA
408296 AAAGGTGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
** *
408322 AAAGGTG-CCACCAACTTGTGTGGG-CTTTG
1 AAAGGTGTCCTGC-TCTT-TG-GGGAC--TG
*
408351 AAAGGGGTCCTGCTCTTTGGGGACTG
1 AAAGGTGTCCTGCTCTTTGGGGACTG
408377 AAAGGTG
1 AAAGGTG
408384 CCACCAACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 14
0.68 0.12 0.20
Matches are distributed among these distances:
25 3 0.06
26 18 0.38
27 6 0.13
28 6 0.13
29 11 0.23
30 3 0.06
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.27
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGGGGACTG
Found at i:409807 original size:1 final size:1
Alignment explanation
Indices: 409803--409866 Score: 56
Period size: 1 Copynumber: 64.0 Consensus size: 1
409793 ATTTTTCCTC
* * * * * * * *
409803 TTTTTTTTTTGTTTGTTTTTTTTGTTTTGTTTTTTTTTGTTATTTTTTTTTGTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
409867 GAAAAAGAAT
Statistics
Matches: 47, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.88
Consensus pattern (1 bp):
T
Found at i:409821 original size:14 final size:14
Alignment explanation
Indices: 409804--409867 Score: 80
Period size: 13 Copynumber: 4.7 Consensus size: 14
409794 TTTTTCCTCT
409804 TTTTTTTTTGTTTG
1 TTTTTTTTTGTTTG
409818 -TTTTTTTTGTTTTG
1 TTTTTTTTTG-TTTG
*
409832 TTTTTTTTTG-TTA
1 TTTTTTTTTGTTTG
*
409845 TTTTTTTTTGTGT-
1 TTTTTTTTTGTTTG
409858 TTTTTTTTTG
1 TTTTTTTTTG
409868 AAAAAGAATG
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
13 31 0.69
14 5 0.11
15 9 0.20
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (14 bp):
TTTTTTTTTGTTTG
Found at i:409821 original size:15 final size:14
Alignment explanation
Indices: 409803--409866 Score: 80
Period size: 14 Copynumber: 4.6 Consensus size: 14
409793 ATTTTTCCTC
409803 TTTTTTTTTTGT-T
1 TTTTTTTTTTGTGT
*
409816 TGTTTTTTTTGT-T
1 TTTTTTTTTTGTGT
409829 TTGTTTTTTTT-TGT
1 TT-TTTTTTTTGTGT
409843 TATTTTTTTTTGTGT
1 T-TTTTTTTTTGTGT
409858 TTTTTTTTT
1 TTTTTTTTT
409867 GAAAAAGAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
13 14 0.31
14 26 0.58
15 5 0.11
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.88
Consensus pattern (14 bp):
TTTTTTTTTTGTGT
Found at i:409835 original size:28 final size:27
Alignment explanation
Indices: 409803--409866 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 27
409793 ATTTTTCCTC
*
409803 TTTTTTTTTTGTT-TGTTTTTTTTGTTT
1 TTTTTTTTTTGTTAT-TTTTTTTTGTGT
409830 TGTTTTTTTTTGTTATTTTTTTTTGTGT
1 T-TTTTTTTTTGTTATTTTTTTTTGTGT
409858 TTTTTTTTT
1 TTTTTTTTT
409867 GAAAAAGAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
27 9 0.26
28 24 0.71
29 1 0.03
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.88
Consensus pattern (27 bp):
TTTTTTTTTTGTTATTTTTTTTTGTGT
Found at i:422268 original size:28 final size:28
Alignment explanation
Indices: 422228--422295 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 28
422218 AAAATCGGGA
*
422228 TTGGAGTATCCCC-TCGGAAGTAACGAGG
1 TTGGAGTATCCCCAT-GGAAATAACGAGG
*
422256 TTGGAGTATCCCCGATTGAAATAACGAGG
1 TTGGAGTATCCCC-ATGGAAATAACGAGG
422285 TTGGAGTATCC
1 TTGGAGTATCC
422296 TCGATTGTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 13 0.36
29 22 0.61
30 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (28 bp):
TTGGAGTATCCCCATGGAAATAACGAGG
Found at i:422346 original size:52 final size:50
Alignment explanation
Indices: 422283--422416 Score: 160
Period size: 52 Copynumber: 2.6 Consensus size: 50
422273 GAAATAACGA
* * *
422283 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGG-ATTTTTGAAAATAAAACCG
** * *
422334 GAGTTGGAGTATCCCCGATTAAAGGAAAATTGGCTTTTTGAAAATAAAACCG
1 G-GTTGGAGTATCCCCGATT-GTGAAAAATTGGATTTTTGAAAATAAAACCG
422386 GGATTGGAGTATCCCCGATTGTGGAAAAATT
1 GG-TTGGAGTATCCCCGATTGT-GAAAAATT
422417 AATGTTTTAG
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
51 2 0.03
52 58 0.84
53 9 0.13
ACGTcount: A:0.33, C:0.11, G:0.25, T:0.31
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGATTTTTGAAAATAAAACCG
Found at i:422499 original size:27 final size:27
Alignment explanation
Indices: 422437--422511 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 27
422427 CGATAAAACT
422437 GGGGTTGGAGTATCCCCTCGA-AAATAAC
1 GGGGTTGGAGTAT-CCC-CGATAAATAAC
* *
422465 GGGGTTGGAGTATCCCCGATGATTAAC
1 GGGGTTGGAGTATCCCCGATAAATAAC
422492 GGGGTTGGAGTATCCCCGAT
1 GGGGTTGGAGTATCCCCGAT
422512 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 3 0.07
27 28 0.64
28 13 0.30
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.24
Consensus pattern (27 bp):
GGGGTTGGAGTATCCCCGATAAATAAC
Found at i:422535 original size:213 final size:212
Alignment explanation
Indices: 422228--422622 Score: 609
Period size: 213 Copynumber: 1.9 Consensus size: 212
422218 AAAATCGGGA
* *
422228 TTGGAGTATCCCCTCGGAAGTAACGAGGTTGGAGTATCCCCGATTGAAATAACGAGGTTGGAGTA
1 TTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGATTGAAATAACGAGGTTGGAGTA
* *
422293 TCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAG
66 TCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTAAA-
* *
422358 GAAAATTGGCT-TTTTGAAAATAAAACCGG-GATTGGAGTATCCCCGATTGTGGAAAAATTAATG
130 GAAAATTAG-TGTTTTGAAAATAAAACCGGAG-TTGGAATATCCCCGATTGTGGAAAAATTAATG
422421 TTTTAGCGATAAAACTGGGG
193 TTTTAGCGATAAAACTGGGG
* * *
422441 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGA-TG-ATTAACGGGGTTGGAGTA
1 TTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGATTGAAATAACGAGGTTGGAGTA
* *
422504 TCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTAT
66 TCCCCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTAA
*
422569 AGAAAATTAGTGTTTTGAAAATAAAATCGGAGTTGGAATATCCCCGATTGTGGA
129 AGAAAATTAGTGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGA
422623 GAATTGAGAA
Statistics
Matches: 166, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
211 30 0.18
212 56 0.34
213 80 0.48
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.29
Consensus pattern (212 bp):
TTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGATTGAAATAACGAGGTTGGAGTA
TCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATTAAAG
AAAATTAGTGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGAAAAATTAATGTTT
TAGCGATAAAACTGGGG
Found at i:422595 original size:51 final size:53
Alignment explanation
Indices: 422499--422617 Score: 154
Period size: 51 Copynumber: 2.3 Consensus size: 53
422489 AACGGGGTTG
* * *
422499 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGAGTTA
*
422553 GAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
*
422604 GAATATCCCCGATT
1 GAGTATCCCCGATT
422618 GTGGAGAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
51 34 0.58
52 2 0.03
53 8 0.14
54 15 0.25
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.32
Consensus pattern (53 bp):
GAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
Found at i:424992 original size:13 final size:13
Alignment explanation
Indices: 424974--424999 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
424964 ACAAAGATCC
424974 ATGTATCGATACA
1 ATGTATCGATACA
424987 ATGTATCGATACA
1 ATGTATCGATACA
425000 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:424995 original size:33 final size:33
Alignment explanation
Indices: 424953--425019 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
424943 AAAATTTCCA
***
424953 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
424986 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
425019 A
1 A
425020 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:425063 original size:19 final size:18
Alignment explanation
Indices: 425039--425138 Score: 103
Period size: 19 Copynumber: 5.9 Consensus size: 18
425029 CAGTAGCTAA
425039 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
425058 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
425073 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
425090 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
425105 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
425122 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
425139 TTGTTGAATT
Statistics
Matches: 69, Mismatches: 0, Indels: 25
0.73 0.00 0.27
Matches are distributed among these distances:
13 22 0.32
14 2 0.03
16 4 0.06
18 5 0.07
19 36 0.52
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:425079 original size:13 final size:13
Alignment explanation
Indices: 425061--425117 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
425051 ACAATACTTA
425061 TGTATCGATACAT
1 TGTATCGATACAT
425074 TGTATCGATACAAAACTT
1 TGTATCGATAC---A--T
425092 ATGTATCGATACAT
1 -TGTATCGATACAT
425106 TGTATCGATACA
1 TGTATCGATACA
425118 AAACTTATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
14 1 0.03
16 2 0.05
18 1 0.03
19 11 0.29
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:425083 original size:32 final size:32
Alignment explanation
Indices: 425042--425136 Score: 181
Period size: 32 Copynumber: 3.0 Consensus size: 32
425032 TAGCTAATTA
*
425042 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
425074 TGTATCGATACAAAACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
425106 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
425137 AATTGTTGAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:425218 original size:21 final size:21
Alignment explanation
Indices: 425194--425250 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
425184 CATTTGTAGG
425194 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
425215 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
425236 ATGTATCGATACATT
1 ATGTATCGATACATT
425251 TGGATAAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:453220 original size:23 final size:23
Alignment explanation
Indices: 453177--453221 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
453167 ACCTCTCAAT
*
453177 TTCTTCAAGAATTATACCCCAAA
1 TTCTTCAAGAATTATAACCCAAA
*
453200 TTCTT-AAGAGATTGTAACCCAA
1 TTCTTCAAGA-ATTATAACCCAA
453222 GGTTGATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (23 bp):
TTCTTCAAGAATTATAACCCAAA
Found at i:453678 original size:97 final size:95
Alignment explanation
Indices: 453511--453705 Score: 291
Period size: 97 Copynumber: 2.0 Consensus size: 95
453501 TTTGTAGCTA
*
453511 TTGTTGACTTGTTTGGAGCTTGTTTCCGCGCATTCACACTCCTATGTATCGATACTTTTCATAAT
1 TTGTTGACTTGTTTGAAGCTTGTTTCCGCGCATTCACACTCCTATGTATCGATACTTTTCATAAT
*
453576 ATATCGATATATGCATTTGAAATTTATAACCG
66 ATATCGATACATGCA--TGAAATTTATAACCG
* * ** *
453608 TTGTTGACTTGTTTGAAGCTTGTTTTCGTGCATTCATGCTCCTATGTATCGATGCTTTTCATAAT
1 TTGTTGACTTGTTTGAAGCTTGTTTCCGCGCATTCACACTCCTATGTATCGATACTTTTCATAAT
* *
453673 GTATCGATACATGCATGAAATTTATAGCCG
66 ATATCGATACATGCATGAAATTTATAACCG
453703 TTG
1 TTG
453706 AGCTCAATGC
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
95 17 0.19
97 72 0.81
ACGTcount: A:0.23, C:0.17, G:0.17, T:0.42
Consensus pattern (95 bp):
TTGTTGACTTGTTTGAAGCTTGTTTCCGCGCATTCACACTCCTATGTATCGATACTTTTCATAAT
ATATCGATACATGCATGAAATTTATAACCG
Found at i:453887 original size:20 final size:19
Alignment explanation
Indices: 453808--453888 Score: 75
Period size: 19 Copynumber: 4.5 Consensus size: 19
453798 CAATTTCATA
* **
453808 TATCGATACAATTAATAAA
1 TATCGATACAATGAATATG
*
453827 TATCGATACAATGAAAATG
1 TATCGATACAATGAATATG
453846 TATCGATACAATG--TAT-
1 TATCGATACAATGAATATG
453862 TA---ATACAATGCAATATG
1 TATCGATACAATG-AATATG
453879 TATCGATACA
1 TATCGATACA
453889 TCTGCATGTG
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
13 8 0.16
16 5 0.10
17 4 0.08
19 28 0.56
20 5 0.10
ACGTcount: A:0.46, C:0.12, G:0.11, T:0.31
Consensus pattern (19 bp):
TATCGATACAATGAATATG
Found at i:456530 original size:13 final size:13
Alignment explanation
Indices: 456508--456544 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
456498 ACAGTACCCT
* *
456508 TGTATTGATACAC
1 TGTATCGATACAA
456521 TGTATCGATACAA
1 TGTATCGATACAA
456534 TGTATCGATAC
1 TGTATCGATAC
456545 TAAGATCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:460116 original size:46 final size:47
Alignment explanation
Indices: 460038--460128 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 47
460028 CATGCAAAGA
460038 TCAATTCTTCAATTTAGGTACCCAAACTTTCTTGGGTCCTTTTTCGT
1 TCAATTCTTCAATTTAGGTACCCAAACTTTCTTGGGTCCTTTTTCGT
*
460085 TCAATTCTTCGATTTA-GTACCCAAACTTTCTTGGGTCCTTTTTC
1 TCAATTCTTCAATTTAGGTACCCAAACTTTCTTGGGTCCTTTTTC
460129 TTTAGTATTT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
46 28 0.65
47 15 0.35
ACGTcount: A:0.19, C:0.24, G:0.12, T:0.45
Consensus pattern (47 bp):
TCAATTCTTCAATTTAGGTACCCAAACTTTCTTGGGTCCTTTTTCGT
Found at i:460507 original size:3 final size:3
Alignment explanation
Indices: 460499--460524 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
460489 CGAGTTAACT
460499 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
460525 TCTGATGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:462221 original size:19 final size:20
Alignment explanation
Indices: 462194--462243 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
462184 ATTTTAGTAC
*
462194 GTATTGATACAATG-AATAT
1 GTATTGATACAAAGCAATAT
*
462213 GTATCGATACAAAGCAATAT
1 GTATTGATACAAAGCAATAT
462233 GTATTGATACA
1 GTATTGATACA
462244 TCTTGGTGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (20 bp):
GTATTGATACAAAGCAATAT
Found at i:464980 original size:18 final size:17
Alignment explanation
Indices: 464940--464982 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
464930 TAAACATTAA
464940 AATATTAAAAATTAATT
1 AATATTAAAAATTAATT
**
464957 GTTATTAAAATATTAATT
1 AATATTAAAA-ATTAATT
464975 AATATTAA
1 AATATTAA
464983 TTTATAATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
AATATTAAAAATTAATT
Found at i:465860 original size:10 final size:10
Alignment explanation
Indices: 465845--465931 Score: 71
Period size: 9 Copynumber: 9.1 Consensus size: 10
465835 AAATATATTT
465845 TTAAAATATA
1 TTAAAATATA
465855 TTAAAAT-TA
1 TTAAAATATA
* *
465864 ATATAA-ATA
1 TTAAAATATA
465873 -TAAAATAT-
1 TTAAAATATA
*
465881 TTTAAATATAA
1 TTAAAATAT-A
465892 TTAAAATAT-
1 TTAAAATATA
465901 TATAAAATATA
1 T-TAAAATATA
465912 -T-AAATATAA
1 TTAAAATAT-A
465921 TTAAAATATA
1 TTAAAATATA
465931 T
1 T
465932 AAATAATTAA
Statistics
Matches: 62, Mismatches: 5, Indels: 20
0.71 0.06 0.23
Matches are distributed among these distances:
8 10 0.16
9 20 0.32
10 18 0.29
11 14 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
TTAAAATATA
Found at i:465876 original size:27 final size:28
Alignment explanation
Indices: 465846--465941 Score: 87
Period size: 27 Copynumber: 3.5 Consensus size: 28
465836 AATATATTTT
465846 TAAAATATATTAAAAT-TAATATAAATA
1 TAAAATATATTAAAATATAATATAAATA
* *
465873 TAAAATAT-TTTAAATATAATTAAAATATTA
1 TAAAATATATTAAAATATAA-TATAA-A-TA
465903 TAAAATATA-T-AAATATAAT-TAAAATA
1 TAAAATATATTAAAATATAATAT-AAATA
465929 TATAAATA-ATTAA
1 TA-AAATATATTAA
465942 TTTAATTATA
Statistics
Matches: 57, Mismatches: 3, Indels: 17
0.74 0.04 0.22
Matches are distributed among these distances:
26 11 0.19
27 18 0.32
28 8 0.14
29 9 0.16
30 11 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (28 bp):
TAAAATATATTAAAATATAATATAAATA
Found at i:465881 original size:38 final size:38
Alignment explanation
Indices: 465814--465951 Score: 131
Period size: 39 Copynumber: 3.6 Consensus size: 38
465804 TAAAAAAAGT
*
465814 TATTAAAATATAATAT-AATAAAAATATATTTTTAAAATA
1 TATTAAAAT-TAATATAAATATAAA-ATATTTTTAAAATA
465853 TATTAAAATTAATATAAATATAAAATA-TTTT-AAATA
1 TATTAAAATTAATATAAATATAAAATATTTTTAAAATA
* **
465889 TAATTAAAA-TATTATAAAATATATAAATATAATTAAAATA
1 T-ATTAAAATTAATAT-AAATATA-AAATATTTTTAAAATA
* * *
465929 TATAAATAATTAATTTAATTATA
1 TATTAA-AATTAATATAAATATA
465952 TTAGTAAAAC
Statistics
Matches: 83, Mismatches: 8, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
36 11 0.13
37 18 0.22
38 14 0.17
39 22 0.27
40 14 0.17
41 4 0.05
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (38 bp):
TATTAAAATTAATATAAATATAAAATATTTTTAAAATA
Found at i:465921 original size:29 final size:29
Alignment explanation
Indices: 465870--465934 Score: 105
Period size: 29 Copynumber: 2.2 Consensus size: 29
465860 ATTAATATAA
*
465870 ATATAAAATATTTTAAATATAATTAAAAT
1 ATATAAAATATTATAAATATAATTAAAAT
465899 ATTATAAAATA-TATAAATATAATTAAAAT
1 A-TATAAAATATTATAAATATAATTAAAAT
465928 ATATAAA
1 ATATAAA
465935 TAATTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
28 6 0.18
29 19 0.56
30 9 0.26
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (29 bp):
ATATAAAATATTATAAATATAATTAAAAT
Found at i:465925 original size:19 final size:19
Alignment explanation
Indices: 465845--465936 Score: 70
Period size: 19 Copynumber: 4.8 Consensus size: 19
465835 AAATATATTT
465845 TTAAAATATATTAAA-ATTAA
1 TTAAAATATA-TAAATA-TAA
465865 -TATAAATATA-AAATAT--
1 TTA-AAATATATAAATATAA
* *
465881 TTTAAATATAATTAAA-ATAT
1 TTAAAATAT-A-TAAATATAA
465901 TATAAAATATATAAATATAA
1 T-TAAAATATATAAATATAA
465921 TTAAAATATATAAATA
1 TTAAAATATATAAATA
465937 ATTAATTTAA
Statistics
Matches: 59, Mismatches: 3, Indels: 21
0.71 0.04 0.25
Matches are distributed among these distances:
16 6 0.10
17 2 0.03
18 6 0.10
19 25 0.42
20 13 0.22
21 7 0.12
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAAAATATATAAATATAA
Found at i:466486 original size:21 final size:19
Alignment explanation
Indices: 466448--466489 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
466438 TAAAAATTAT
466448 ATAAAAAATAAATTATAAA
1 ATAAAAAATAAATTATAAA
*
466467 ATAAAAATATATATTTATAAA
1 ATAAAAA-ATA-AATTATAAA
466488 AT
1 AT
466490 TATATCATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 7 0.35
20 3 0.15
21 10 0.50
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
ATAAAAAATAAATTATAAA
Done.