Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold51
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3712191
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.32
Warning! 131352 characters in sequence are not A, C, G, or T
File 6 of 23
Found at i:770183 original size:21 final size:21
Alignment explanation
Indices: 770154--770198 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
770144 AAGTTTTTAT
*
770154 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
770174 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
770196 TTT
1 TTT
770199 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:772434 original size:13 final size:13
Alignment explanation
Indices: 772416--772441 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
772406 CAATTTTTTG
772416 TGTATCGATACAT
1 TGTATCGATACAT
772429 TGTATCGATACAT
1 TGTATCGATACAT
772442 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:772823 original size:56 final size:56
Alignment explanation
Indices: 772763--772874 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
772753 TGTTATTTTC
772763 AAAATAATTTCCGATTTTATTCAATCCTTTGTTATATCAAAACCAAGATCCTAACA
1 AAAATAATTTCCGATTTTATTCAATCCTTTGTTATATCAAAACCAAGATCCTAACA
* *
772819 AAAATAATTTCCGGTTTTATTCAATTCTTTGTTATATCAAAACCAAGATCCTAACA
1 AAAATAATTTCCGATTTTATTCAATCCTTTGTTATATCAAAACCAAGATCCTAACA
772875 GTCTCCCCCT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.37
Consensus pattern (56 bp):
AAAATAATTTCCGATTTTATTCAATCCTTTGTTATATCAAAACCAAGATCCTAACA
Found at i:775848 original size:84 final size:84
Alignment explanation
Indices: 775693--775857 Score: 201
Period size: 84 Copynumber: 2.0 Consensus size: 84
775683 CATTTTCCAC
* * * *
775693 TTGCAACTCATTTCTTTTCTCCTCTAATTCATTTATTTTCTTTTTAAAAGAATTATTTTCTAAAC
1 TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
775758 TCATTGATTTACTTTCATT
66 TCATTGATTTACTTTCATT
* *
775777 TTGCAACTC-TTTCATATTCTTCTCTAATTCACTTAATTTC-TTTT-CAAGAATATCATTCTCTA
1 TTGCAACTCATTTC-TATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAAT-T-ATTCTCTA
* * *
775839 CACTTATTGATTTATTTTC
63 AACTCATTGATTTACTTTC
775858 TTCTTTGAGT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
82 6 0.09
83 9 0.13
84 54 0.78
ACGTcount: A:0.25, C:0.19, G:0.04, T:0.52
Consensus pattern (84 bp):
TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
TCATTGATTTACTTTCATT
Found at i:777925 original size:13 final size:13
Alignment explanation
Indices: 777907--777964 Score: 62
Period size: 13 Copynumber: 4.0 Consensus size: 13
777897 CAATTTTTGG
777907 TGTATCGATACAT
1 TGTATCGATACAT
777920 TGTATCGATACATACTT
1 TGTATCGATAC--A--T
777937 GGTGTATCGATACAT
1 --TGTATCGATACAT
777952 TGTATCGATACAT
1 TGTATCGATACAT
777965 ACTTGGTGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 24 0.62
15 2 0.05
17 2 0.05
19 11 0.28
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:777944 original size:19 final size:19
Alignment explanation
Indices: 777920--778033 Score: 144
Period size: 19 Copynumber: 6.6 Consensus size: 19
777910 ATCGATACAT
777920 TGTATCGATACATACTTGG
1 TGTATCGATACATACTTGG
777939 TGTATCGATAC--A--T--
1 TGTATCGATACATACTTGG
777952 TGTATCGATACATACTTGG
1 TGTATCGATACATACTTGG
777971 TGTATCGATACATACTTGG
1 TGTATCGATACATACTTGG
777990 TGTATCGATAC--A--T--
1 TGTATCGATACATACTTGG
778003 TGTATCGATACATACTTGG
1 TGTATCGATACATACTTGG
778022 TGTATCGATACA
1 TGTATCGATACA
778034 AGTTTGGCTA
Statistics
Matches: 83, Mismatches: 0, Indels: 24
0.78 0.00 0.22
Matches are distributed among these distances:
13 22 0.27
15 4 0.05
17 4 0.05
19 53 0.64
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATACTTGG
Found at i:777944 original size:32 final size:32
Alignment explanation
Indices: 777887--777983 Score: 167
Period size: 32 Copynumber: 3.0 Consensus size: 32
777877 TACAAGCCAA
**
777887 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATAC-ATACTTGGTGTATCGATACAT
777920 TGTATCGATACATACTTGGTGTATCGATACAT
1 TGTATCGATACATACTTGGTGTATCGATACAT
777952 TGTATCGATACATACTTGGTGTATCGATACAT
1 TGTATCGATACATACTTGGTGTATCGATACAT
777984 ACTTGGTGTA
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
32 51 0.82
33 11 0.18
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATACTTGGTGTATCGATACAT
Found at i:777982 original size:51 final size:51
Alignment explanation
Indices: 777920--778033 Score: 228
Period size: 51 Copynumber: 2.2 Consensus size: 51
777910 ATCGATACAT
777920 TGTATCGATACATACTTGGTGTATCGATACATTGTATCGATACATACTTGG
1 TGTATCGATACATACTTGGTGTATCGATACATTGTATCGATACATACTTGG
777971 TGTATCGATACATACTTGGTGTATCGATACATTGTATCGATACATACTTGG
1 TGTATCGATACATACTTGGTGTATCGATACATTGTATCGATACATACTTGG
778022 TGTATCGATACA
1 TGTATCGATACA
778034 AGTTTGGCTA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 63 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (51 bp):
TGTATCGATACATACTTGGTGTATCGATACATTGTATCGATACATACTTGG
Found at i:778007 original size:32 final size:32
Alignment explanation
Indices: 777971--778033 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
777961 ACATACTTGG
777971 TGTATCGATACATACTTGGTGTATCGATACAT
1 TGTATCGATACATACTTGGTGTATCGATACAT
778003 TGTATCGATACATACTTGGTGTATCGATACA
1 TGTATCGATACATACTTGGTGTATCGATACA
778034 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATACTTGGTGTATCGATACAT
Found at i:778008 original size:13 final size:13
Alignment explanation
Indices: 777990--778015 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
777980 ACATACTTGG
777990 TGTATCGATACAT
1 TGTATCGATACAT
778003 TGTATCGATACAT
1 TGTATCGATACAT
778016 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:778040 original size:19 final size:18
Alignment explanation
Indices: 777887--778034 Score: 128
Period size: 19 Copynumber: 8.7 Consensus size: 18
777877 TACAAGCCAA
*
777887 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--CTTGG
777907 TGTATCGATAC-A--T--
1 TGTATCGATACAACTTGG
777920 TGTATCGATACATACTTGG
1 TGTATCGATACA-ACTTGG
777939 TGTATCGATAC-A--T--
1 TGTATCGATACAACTTGG
777952 TGTATCGATACATACTTGG
1 TGTATCGATACA-ACTTGG
777971 TGTATCGATACATACTTGG
1 TGTATCGATACA-ACTTGG
777990 TGTATCGATAC-A--T--
1 TGTATCGATACAACTTGG
778003 TGTATCGATACATACTTGG
1 TGTATCGATACA-ACTTGG
778022 TGTATCGATACAA
1 TGTATCGATACAA
778035 GTTTGGCTAC
Statistics
Matches: 110, Mismatches: 0, Indels: 38
0.74 0.00 0.26
Matches are distributed among these distances:
13 33 0.30
15 6 0.05
17 5 0.05
18 1 0.01
19 54 0.49
20 11 0.10
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (18 bp):
TGTATCGATACAACTTGG
Found at i:781707 original size:21 final size:21
Alignment explanation
Indices: 781665--781707 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
781655 TATTTATTTT
* *
781665 AAAATACTATTATTATAGTTA
1 AAAATAATATTAATATAGTTA
781686 AAAATAATATTAAATATA-TTA
1 AAAATAATATT-AATATAGTTA
781707 A
1 A
781708 TTACTACAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
AAAATAATATTAATATAGTTA
Found at i:781878 original size:18 final size:18
Alignment explanation
Indices: 781855--781889 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
781845 ATTTTTAGAT
781855 TATTATT-ATAAATATTTG
1 TATTATTAAT-AATATTTG
781873 TATTATTAATAATATTT
1 TATTATTAATAATATTT
781890 ATCTAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
TATTATTAATAATATTTG
Found at i:782840 original size:19 final size:19
Alignment explanation
Indices: 782816--782880 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 19
782806 TAGCCAAACT
782816 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAATA
782835 TGTATCGAT--AC---A-A
1 TGTATCGATACACAAAATA
782848 TGTATCGATACACAAAAAATA
1 TGTATCGATACAC--AAAATA
782869 TGTATCGATACA
1 TGTATCGATACA
782881 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 9 0.24
20 1 0.03
21 13 0.34
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (19 bp):
TGTATCGATACACAAAATA
Found at i:782852 original size:13 final size:13
Alignment explanation
Indices: 782834--782859 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
782824 TACACAAAAT
782834 ATGTATCGATACA
1 ATGTATCGATACA
782847 ATGTATCGATACA
1 ATGTATCGATACA
782860 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:782857 original size:32 final size:33
Alignment explanation
Indices: 782816--782880 Score: 114
Period size: 34 Copynumber: 2.0 Consensus size: 33
782806 TAGCCAAACT
782816 TGTATCGATACAC-AAAATATGTATCGATACAA
1 TGTATCGATACACAAAAATATGTATCGATACAA
782848 TGTATCGATACACAAAAAATATGTATCGATACA
1 TGTATCGATACAC-AAAAATATGTATCGATACA
782881 TTGGCTTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 13 0.42
34 18 0.58
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAATATGTATCGATACAA
Found at i:785110 original size:21 final size:21
Alignment explanation
Indices: 785077--785126 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
785067 TTGCAAGTTG
*
785077 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
785099 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
785120 AAATAAA
1 AAATAAA
785127 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:786944 original size:15 final size:15
Alignment explanation
Indices: 786924--786954 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
786914 TAAAAATATC
*
786924 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
786939 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
786954 C
1 C
786955 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:789191 original size:20 final size:20
Alignment explanation
Indices: 789148--789193 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
789138 AAATCTTTTG
789148 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
789169 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
789189 CAAAA
1 CAAAA
789194 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:791599 original size:13 final size:13
Alignment explanation
Indices: 791581--791606 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
791571 TACACAAAAT
791581 ATGTATCGATACA
1 ATGTATCGATACA
791594 ATGTATCGATACA
1 ATGTATCGATACA
791607 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:791606 original size:32 final size:33
Alignment explanation
Indices: 791563--791627 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
791553 TAGCCAAACT
791563 TGTATCAATACAC-AAAATATGTATCGATACAA
1 TGTATCAATACACAAAAATATGTATCGATACAA
*
791595 TGTATCGATACACAAAAAATATGTATCGATACA
1 TGTATCAATACAC-AAAAATATGTATCGATACA
791628 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 12 0.40
34 18 0.60
ACGTcount: A:0.46, C:0.15, G:0.11, T:0.28
Consensus pattern (33 bp):
TGTATCAATACACAAAAATATGTATCGATACAA
Found at i:795374 original size:20 final size:20
Alignment explanation
Indices: 795345--795421 Score: 82
Period size: 20 Copynumber: 3.9 Consensus size: 20
795335 GGTAAAAGAC
* * *
795345 AGAATATATCGACACATTGA
1 AGAATGTATCGATACATTAA
*
795365 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTAA
* **
795385 TGCTTGTATCGATACATTAA
1 AGAATGTATCGATACATTAA
*
795405 AAAATGTATCGATACAT
1 AGAATGTATCGATACAT
795422 CTGGGTACTT
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (20 bp):
AGAATGTATCGATACATTAA
Found at i:799214 original size:52 final size:52
Alignment explanation
Indices: 799146--799274 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
799136 TGAAATATGA
*
799146 AAATTTGCCTGCATGTATCGATACATTTCAAAGTGTATCAATACATCTAGGC
1 AAATTTGCTTGCATGTATCGATACATTTCAAAGTGTATCAATACATCTAGGC
* * * * *
799198 AAATTTGCTTGTATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCTTGCATGTATCGATACATTTCAAAGTGTATCAATACATCTAGGC
799250 AAATTTGCTTGCATGTATCGATACA
1 AAATTTGCTTGCATGTATCGATACA
799275 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCTTGCATGTATCGATACATTTCAAAGTGTATCAATACATCTAGGC
Found at i:799285 original size:52 final size:51
Alignment explanation
Indices: 799146--799294 Score: 176
Period size: 52 Copynumber: 2.9 Consensus size: 51
799136 TGAAATATGA
* * *
799146 AAATTTGCCTGCATGTATCGATAC-ATTTCAAAGTGTATCAATACATCTAGGC
1 AAATTTGCTTGCATGTATCGATACAATATC--AGTGTATCGATACATCTAGGC
* * *
799198 AAATTTGCTTGTATGTATCGATACATTTTAT-AGTGTATCGATACATCTGGGC
1 AAATTTGCTTGCATGTATCGATACA--ATATCAGTGTATCGATACATCTAGGC
*
799250 AAATTTGCTTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCTTGCATGTATCGATAC-AATATCAGTGTATCGATACA
799295 ATGTATCGTT
Statistics
Matches: 83, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
51 2 0.02
52 78 0.94
53 1 0.01
55 2 0.02
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (51 bp):
AAATTTGCTTGCATGTATCGATACAATATCAGTGTATCGATACATCTAGGC
Found at i:799374 original size:19 final size:19
Alignment explanation
Indices: 799350--799478 Score: 123
Period size: 19 Copynumber: 7.7 Consensus size: 19
799340 TAGCTTACAT
799350 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
799369 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
799382 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
799401 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
799414 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
799433 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
799446 TGTATCGATACAACACTTTA
1 TGTATCGATACAACAC-TTA
799466 TGTATCGATACAA
1 TGTATCGATACAA
799479 ATCGTTGAAA
Statistics
Matches: 91, Mismatches: 0, Indels: 37
0.71 0.00 0.29
Matches are distributed among these distances:
13 27 0.30
14 3 0.03
16 18 0.20
18 2 0.02
19 28 0.31
20 13 0.14
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:799386 original size:32 final size:32
Alignment explanation
Indices: 799345--799477 Score: 257
Period size: 32 Copynumber: 4.1 Consensus size: 32
799335 GGCAGTAGCT
799345 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
799377 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
799409 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
799441 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACAC-TTATGTATCGA
799474 TACA
1 TACA
799478 AATCGTTGAA
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
32 85 0.85
33 15 0.15
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:799387 original size:13 final size:13
Alignment explanation
Indices: 799369--799457 Score: 70
Period size: 13 Copynumber: 5.9 Consensus size: 13
799359 ACAACACTTA
799369 TGTATCGATACAT
1 TGTATCGATACAT
799382 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
799400 ATGTATCGATACAT
1 -TGTATCGATACAT
799414 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
799432 ATGTATCGATACAT
1 -TGTATCGATACAT
799446 TGTATCGATACA
1 TGTATCGATACA
799458 ACACTTTATG
Statistics
Matches: 64, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 30 0.47
14 2 0.03
16 12 0.19
18 2 0.03
19 18 0.28
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:800446 original size:43 final size:43
Alignment explanation
Indices: 800399--801024 Score: 730
Period size: 43 Copynumber: 13.7 Consensus size: 43
800389 GCCAATATTT
* *
800399 TGATTTAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGC
1 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
* *
800442 TGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATATGC
1 TGATTCAAGGCCAGCTATATTGGACTT--A-A--AGGTGCCAATGTGC
800490 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
1 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
*
800533 TGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGC
1 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
* *
800576 TGATTCAAGGCCAGCTACATTGGACTTAAATATGAAGGTGCCAATATGC
1 TGATTCAAGGCCAGCTATATTGGAC-T---TA--AAGGTGCCAATGTGC
*
800625 TGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGC
1 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
* *
800668 TGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGC
1 TGATTCAAGGCCAGCTATATTGGACTT-AA-A-G--G-TGCCAATGTGC
* *
800717 TGATTTAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGC
1 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
* * *
800760 TGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTACCAATATGC
1 TGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTGC
* *
800809 TGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCTAATGTGC
1 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
* * *
800852 TGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTACCAATATGC
1 TGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTGC
*
800901 TGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGC
1 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
*
800944 TGATTCAAGGCCAGCTATATTGGACTTAAAGACAAAGGTGCCAATATGC
1 TGATTCAAGGCCAGCTATATTGGACTT------AAAGGTGCCAATGTGC
*
800993 TGATTCAAGGCCAGCGATATTGGACTTAAAGG
1 TGATTCAAGGCCAGCTATATTGGACTTAAAGG
801025 AAGATGCCAC
Statistics
Matches: 508, Mismatches: 40, Indels: 70
0.82 0.06 0.11
Matches are distributed among these distances:
43 258 0.51
44 4 0.01
45 7 0.01
46 4 0.01
47 5 0.01
48 43 0.08
49 187 0.37
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (43 bp):
TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
Found at i:800542 original size:21 final size:21
Alignment explanation
Indices: 800518--800585 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
800508 ATTGGACTTA
800518 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
* * *
800539 AAGGCCAGCTACAT-TG--GACTTA
1 AAGG--TGCCA-ATGTGCTGA-TTC
800561 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
800582 AAGG
1 AAGG
800586 CCAGCTACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 12 0.35
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (21 bp):
AAGGTGCCAATGTGCTGATTC
Found at i:800564 original size:22 final size:22
Alignment explanation
Indices: 800539--800605 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
800529 GTGCTGATTC
800539 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
* * *
800561 AAGG--TGCCA-ATGTGCTGA-TTC
1 AAGGCCAGCTACAT-TG--GACTTA
800582 AAGGCCAGCTACATTGGACTTA
1 AAGGCCAGCTACATTGGACTTA
800604 AA
1 AA
800606 TATGAAGGTG
Statistics
Matches: 32, Mismatches: 6, Indels: 14
0.62 0.12 0.27
Matches are distributed among these distances:
19 2 0.06
20 5 0.16
21 8 0.25
22 10 0.31
23 5 0.16
24 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (22 bp):
AAGGCCAGCTACATTGGACTTA
Found at i:800655 original size:92 final size:92
Alignment explanation
Indices: 800427--801024 Score: 956
Period size: 92 Copynumber: 6.5 Consensus size: 92
800417 ATTGGACTTA
* * * *
800427 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATATGCTG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--A-A--AGGTGCCAATGTGCTG
*
800492 ATTCAAGGCCAGCTATATTGGACTT----A--
61 ATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
800518 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
*
800583 AGGCCAGCTACATTGGACTTAAATATG
66 AGGCCAGCTACATTGGACTTAAAGATG
800610 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
800675 AGGCCAGCTACATTGGACTTAAAGATG
66 AGGCCAGCTACATTGGACTTAAAGATG
* *
800702 AAGATGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
800767 AGGCCAGCTACATTGGACTTAAAGATG
66 AGGCCAGCTACATTGGACTTAAAGATG
* *
800794 AAGGTACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCTAATGTGCTGATTCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
800859 AGGCCAGCTACATTGGACTTAAAGATG
66 AGGCCAGCTACATTGGACTTAAAGATG
*
800886 AAGGTACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
* **
800951 AGGCCAGCTATATTGGACTTAAAGACA
66 AGGCCAGCTACATTGGACTTAAAGATG
800978 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGG
801025 AAGATGCCAC
Statistics
Matches: 484, Mismatches: 17, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
86 39 0.08
88 1 0.00
89 1 0.00
90 1 0.00
91 42 0.09
92 400 0.83
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (92 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCA
AGGCCAGCTACATTGGACTTAAAGATG
Found at i:800753 original size:184 final size:184
Alignment explanation
Indices: 800280--801024 Score: 1010
Period size: 184 Copynumber: 4.0 Consensus size: 184
800270 GTTGAAGATG
* *
800280 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGACGCCAATAT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG---AAGATGCCAATAT
* * * ** *
800345 GGTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAAGGCGCCAATATTTTGATTTAAGGC
63 GCTGATTCAAGGCCAGCGATATTGGAC-T-----T---AAAGGTGCCAATGTGCTGATTCAAGGC
* * * * *
800410 CAGCGATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
119 CAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
800469 AAA
184 --A
* * *
800472 GATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G--G-TGCCAATGT
1 -A--AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATAT
* *
800531 GCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
63 GCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACAT
*
800596 TGGACTTAAATATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
128 TGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
800653 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCT
*
800718 GATTTAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
66 GATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
*
800783 ACTTAAAGATGAAGGTACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
131 ACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
800837 AAGGTGCTAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTACCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCT
*
800902 GATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGG
66 GATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
**
800967 ACTTAAAGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
131 ACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
801021 AAGG
1 AAGG
801025 AAGATGCCAC
Statistics
Matches: 504, Mismatches: 34, Indels: 37
0.88 0.06 0.06
Matches are distributed among these distances:
177 36 0.07
178 39 0.08
179 2 0.00
180 3 0.01
181 3 0.01
183 40 0.08
184 305 0.61
185 1 0.00
186 31 0.06
187 1 0.00
192 1 0.00
193 2 0.00
194 2 0.00
195 38 0.08
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (184 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCT
GATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
ACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
Found at i:801066 original size:33 final size:33
Alignment explanation
Indices: 801029--801187 Score: 234
Period size: 33 Copynumber: 4.8 Consensus size: 33
801019 TAAAGGAAGA
* *
801029 TGCCACCAACTTGTGTGGGCTTTTGAAGAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAAGAAGGT
*
801062 TGCCACCGACTTGTGTGGGCTTTAGAAAAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAAGAAGGT
*
801095 TGCCACCAACTTGTGTGGGCTTT-G-AGAAAGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAAG-AAGGT
*
801127 TACCACCGACTTGTGTGGGCTTTAG-AGAATGGT
1 TGCCACCGACTTGTGTGGGCTTTAGAAGAA-GGT
801160 TGCCACCGACTTGTGTGGGCTTTAGAAG
1 TGCCACCGACTTGTGTGGGCTTTAGAAG
801188 GGAAAAAGAG
Statistics
Matches: 114, Mismatches: 8, Indels: 7
0.88 0.06 0.05
Matches are distributed among these distances:
31 1 0.01
32 29 0.25
33 82 0.72
34 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (33 bp):
TGCCACCGACTTGTGTGGGCTTTAGAAGAAGGT
Found at i:801140 original size:65 final size:65
Alignment explanation
Indices: 801029--801186 Score: 248
Period size: 65 Copynumber: 2.4 Consensus size: 65
801019 TAAAGGAAGA
*
801029 TGCCACCAACTTGTGTGGGCTTTTGA-AGAAGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAAG
1 TGCCACCAACTTGTGTGGGC-TTTGAGA-AAGGTTACCACCGACTTGTGTGGGCTTTAGAAAAAG
801093 GT
64 GT
* *
801095 TGCCACCAACTTGTGTGGGCTTTGAGAAAGGTTACCACCGACTTGTGTGGGCTTTAGAGAATGGT
1 TGCCACCAACTTGTGTGGGCTTTGAGAAAGGTTACCACCGACTTGTGTGGGCTTTAGAAAAAGGT
*
801160 TGCCACCGACTTGTGTGGGCTTT-AGAA
1 TGCCACCAACTTGTGTGGGCTTTGAGAA
801187 GGGAAAAAGA
Statistics
Matches: 87, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
64 4 0.05
65 62 0.71
66 21 0.24
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (65 bp):
TGCCACCAACTTGTGTGGGCTTTGAGAAAGGTTACCACCGACTTGTGTGGGCTTTAGAAAAAGGT
Found at i:801233 original size:31 final size:31
Alignment explanation
Indices: 801197--801866 Score: 326
Period size: 32 Copynumber: 20.9 Consensus size: 31
801187 GGGAAAAAGA
* *
801197 GTGCCACGGAGTTGTGGGCTTTGAAAAGAAG
1 GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
* * ** *
801228 GTGCCACAGAGTTGTGGACTTAAAAGGAACAAG
1 GTGCCACGGAGTCGTGGACTTTGAA--AAGAAG
*
801261 GTACCACGGAGGT-GTGGACTTT-AAAAGGGAAAAAAG
1 GTGCCACGGA-GTCGTGGACTTTGAAAA--G----AAG
* *
801297 AGTGCCACGGAGTTGTGGGCTTTGAAAAGAAG
1 -GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
* * ** *
801329 GTGCCACAGAGTTGTGGACTTAAAAGGAACAAG
1 GTGCCACGGAGTCGTGGACTTTGAA--AAGAAG
801362 GTGCCACGGAGTCGTGGACTTT-----G-A-
1 GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
*
801386 -TGCCACTGAGTCGTGGACTTTGAGACAA-AA-
1 GTGCCACGGAGTCGTGGACTTTGA-A-AAGAAG
* *
801416 -CGCCACTGAGTCGTGGACTTTGAAGAA-AAG
1 GTGCCACGGAGTCGTGGACTTTGAA-AAGAAG
**
801446 GTTGCCACTTAGTCGTGGACTTTGAGACAA-AA-
1 G-TGCCACGGAGTCGTGGACTTTGA-A-AAGAAG
* *
801478 -TGCCACTGAGTCGTGGGCTTTGAAAAGAAG
1 GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
* *
801508 GTTGCCACTGAGTCGTGGGCTTTGAAAAGAAG
1 G-TGCCACGGAGTCGTGGACTTTGAAAAGAAG
801540 GTGCCACGGAGTCGTGGACTTTGAGACAA-AA-
1 GTGCCACGGAGTCGTGGACTTTGA-A-AAGAAG
* * * *
801571 -TGCCACTGAGTCGTGGGCTTTGAGAAGAAAAAA
1 GTGCCACGGAGTCGTGGACTTT--GAA-AAGAAG
* * *
801604 GTGCCACGGAGTTGTGGGCTTT-AAAGGAAAAG
1 GTGCCACGGAGTCGTGGACTTTGAAA--AGAAG
*
801636 GTGCCACGGAGTTGTGGACTTT-AAAAGGAAAAAG
1 GTGCCACGGAGTCGTGGACTTTGAAAA-G---AAG
* * **
801670 ATGCCACAGAGAT-GTGGACTTAAAACGGAAGAAG
1 GTGCCACGGAG-TCGTGGACTTTGAA---AAGAAG
* * *
801704 AGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAG
1 -GTGCCACGGAGTCGTGGACTTTGAAAA-G---AAG
* * * * *
801740 ATGCCACGGAGTTGTGGGCTTTGAAAAAAAA
1 GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
*
801771 GTGCCACGGAGTCGTGGACTTTGAAAATAAAAAG
1 GTGCCACGGAGTCGTGGACTTTG--AA-AAGAAG
*
801805 GTGCCACAGAGTCGTGGACTTTGAAGAA-AAG
1 GTGCCACGGAGTCGTGGACTTTGAA-AAGAAG
* *
801836 AGATGCCACTGAGTCGTGAACTTTGAGAAAG
1 -G-TGCCACGGAGTCGTGGACTTTGA-AAAG
801867 TATTTGAAAA
Statistics
Matches: 521, Mismatches: 57, Indels: 119
0.75 0.08 0.17
Matches are distributed among these distances:
23 20 0.04
25 1 0.00
28 2 0.00
29 8 0.02
30 67 0.13
31 93 0.18
32 99 0.19
33 78 0.15
34 73 0.14
35 47 0.09
36 9 0.02
37 18 0.03
38 6 0.01
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (31 bp):
GTGCCACGGAGTCGTGGACTTTGAAAAGAAG
Found at i:801277 original size:33 final size:33
Alignment explanation
Indices: 801188--801382 Score: 182
Period size: 33 Copynumber: 5.9 Consensus size: 33
801178 GCTTTAGAAG
* * **
801188 GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA
1 GGAACAAG-GTGCCACGGAGTTGTGGACTTAAAA
* *
801222 --AAGAAGGTGCCACAGAGTTGTGGACTTAAAA
1 GGAACAAGGTGCCACGGAGTTGTGGACTTAAAA
* *
801253 GGAACAAGGTACCACGGAGGTGTGGACTTTAAAA
1 GGAACAAGGTGCCACGGAGTTGTGGAC-TTAAAA
* * **
801287 GGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA
1 -GG-AACAAG-GTGCCACGGAGTTGTGGACTTAAAA
* *
801323 --AAGAAGGTGCCACAGAGTTGTGGACTTAAAA
1 GGAACAAGGTGCCACGGAGTTGTGGACTTAAAA
*
801354 GGAACAAGGTGCCACGGAGTCGTGGACTT
1 GGAACAAGGTGCCACGGAGTTGTGGACTT
801383 TGATGCCACT
Statistics
Matches: 130, Mismatches: 23, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
31 42 0.32
32 10 0.08
33 45 0.35
34 6 0.05
35 2 0.02
36 9 0.07
37 16 0.12
ACGTcount: A:0.33, C:0.14, G:0.34, T:0.19
Consensus pattern (33 bp):
GGAACAAGGTGCCACGGAGTTGTGGACTTAAAA
Found at i:801304 original size:101 final size:99
Alignment explanation
Indices: 801172--801383 Score: 370
Period size: 101 Copynumber: 2.1 Consensus size: 99
801162 CCACCGACTT
* *
801172 GTGTGGGCTTTAGAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACAG
1 GTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACAG
801237 AGTTGTGGACTTAAAAGGAACAAGGTACCACGGA
66 AGTTGTGGACTTAAAAGGAACAAGGTACCACGGA
801271 GGTGTGGACTTTAAAAGGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCAC
1 -GTGTGGACTTTAAAAGGG-AAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCAC
*
801336 AGAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGA
64 AGAGTTGTGGACTTAAAAGGAACAAGGTACCACGGA
801372 GTCGTGGACTTT
1 GT-GTGGACTTT
801384 GATGCCACTG
Statistics
Matches: 107, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
100 18 0.17
101 89 0.83
ACGTcount: A:0.32, C:0.13, G:0.35, T:0.20
Consensus pattern (99 bp):
GTGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGGTGCCACAG
AGTTGTGGACTTAAAAGGAACAAGGTACCACGGA
Found at i:801396 original size:23 final size:23
Alignment explanation
Indices: 801363--801408 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
801353 AGGAACAAGG
801363 TGCCACGGAGTCGTGGACTTTGA
1 TGCCACGGAGTCGTGGACTTTGA
*
801386 TGCCACTGAGTCGTGGACTTTGA
1 TGCCACGGAGTCGTGGACTTTGA
801409 GACAAAACGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.17, C:0.22, G:0.33, T:0.28
Consensus pattern (23 bp):
TGCCACGGAGTCGTGGACTTTGA
Found at i:801423 original size:30 final size:29
Alignment explanation
Indices: 801385--801596 Score: 230
Period size: 30 Copynumber: 6.9 Consensus size: 29
801375 GTGGACTTTG
801385 ATGCCACTGAGTCGTGGACTTTGAGACAAA
1 ATGCCACTGAGTCGTGGACTTTGAGA-AAA
*
801415 ACGCCACTGAGTCGTGGACTTTGAAGAAAA
1 ATGCCACTGAGTCGTGGACTTTG-AGAAAA
* *
801445 GGTTGCCACTTAGTCGTGGACTTTGAGACAAA
1 --ATGCCACTGAGTCGTGGACTTTGAGA-AAA
*
801477 ATGCCACTGAGTCGTGGGCTTTGA-AAAGA
1 ATGCCACTGAGTCGTGGACTTTGAGAAA-A
*
801506 AGGTTGCCACTGAGTCGTGGGCTTTGA-AAAGA
1 A---TGCCACTGAGTCGTGGACTTTGAGAAA-A
*
801538 AGGTGCCACGGAGTCGTGGACTTTGAGACAAA
1 A--TGCCACTGAGTCGTGGACTTTGAGA-AAA
*
801570 ATGCCACTGAGTCGTGGGCTTTGAGAA
1 ATGCCACTGAGTCGTGGACTTTGAGAA
801597 GAAAAAAGTG
Statistics
Matches: 160, Mismatches: 12, Indels: 21
0.83 0.06 0.11
Matches are distributed among these distances:
28 2 0.01
29 4 0.03
30 69 0.43
31 28 0.17
32 55 0.34
33 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (29 bp):
ATGCCACTGAGTCGTGGACTTTGAGAAAA
Found at i:801483 original size:62 final size:61
Alignment explanation
Indices: 801386--801865 Score: 358
Period size: 62 Copynumber: 7.4 Consensus size: 61
801376 TGGACTTTGA
* * *
801386 TGCCACTGAGTCGTGGACTTTGAGACAAAACGCCACTGAGTCGTGGACTTTGAAGAAAAGG
1 TGCCACTGAGTCGTGGACTTTGAGAAAAAATGCCACGGAGTCGTGGACTTTGAAGAAAAGG
* * * *
801447 TTGCCACTTAGTCGTGGACTTTGAGACAAAATGCCACTGAGTCGTGGGCTTTGAA-AAGAAGG
1 -TGCCACTGAGTCGTGGACTTTGAGAAAAAATGCCACGGAGTCGTGGACTTTGAAGAA-AAGG
* * *
801509 TTGCCACTGAGTCGTGGGCTTTGA-AAAGAAGGTGCCACGGAGTCGTGGACTTTG-AGACAAA-A
1 -TGCCACTGAGTCGTGGACTTTGAGAAA-AA-ATGCCACGGAGTCGTGGACTTTGAAGA-AAAGG
* * * *
801571 TGCCACTGAGTCGTGGGCTTTGAGAAGAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAGGAAAAG
1 TGCCACTGAGTCGTGGACTTT--G-AGAAAAAA-TGCCACGGAGTCGTGGACTTTGAA-GAAAAG
801636 G
61 G
* * * * **
801637 TGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGATGCCACAGAGAT-GTGGACTTAAAACGGAAG
1 TGCCACTGAGTCGTGGACTTT--GA-GAAAAA-ATGCCACGGAG-TCGTGGACTTTGAA--GAA-
801701 AAGAG
58 AAG-G
* * * * * * * *
801706 TGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAGATGCCACGGAGTTGTGGGCTTTGAAAAAAAA
1 TGCCACTGAGTCGTGGACTTT---GA-GAAAAA-ATGCCACGGAGTCGTGGACTTTGAAGAAAAG
801771 G
61 G
* * *
801772 TGCCACGGAGTCGTGGACTTTGAAAATAAAAAGGTGCCACAGAGTCGTGGACTTTGAAGAAAAGA
1 TGCCACTGAGTCGTGGACTTTG-AGA-AAAAA--TGCCACGGAGTCGTGGACTTTGAAGAAAAG-
801837 G
61 G
*
801838 ATGCCACTGAGTCGTGAACTTTGAGAAA
1 -TGCCACTGAGTCGTGGACTTTGAGAAA
801866 GTATTTGAAA
Statistics
Matches: 349, Mismatches: 42, Indels: 51
0.79 0.10 0.12
Matches are distributed among these distances:
61 25 0.07
62 80 0.23
63 26 0.07
64 28 0.08
65 35 0.10
66 69 0.20
67 28 0.08
68 5 0.01
69 22 0.06
70 31 0.09
ACGTcount: A:0.32, C:0.16, G:0.31, T:0.21
Consensus pattern (61 bp):
TGCCACTGAGTCGTGGACTTTGAGAAAAAATGCCACGGAGTCGTGGACTTTGAAGAAAAGG
Found at i:801721 original size:35 final size:35
Alignment explanation
Indices: 801540--801859 Score: 243
Period size: 34 Copynumber: 9.6 Consensus size: 35
801530 TGAAAAGAAG
* * *
801540 GTGCCACGGAGTCGTGGACTTT--GA-GACAAA-A
1 GTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGA
* * * *
801571 -TGCCACTGAGTCGTGGGCTTTGAGAA-GAAAAA-A
1 GTGCCACGGAGTTGTGGACTTT-AAAAGGAAAAAGA
*
801604 GTGCCACGGAGTTGTGGGCTTT-AAAGG-AAAAG-
1 GTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGA
801636 GTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGA
1 GTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGA
* * *
801671 -TGCCACAGAGATGTGGAC-TTAAAACGGAAGAAGA
1 GTGCCACGGAGTTGTGGACTTTAAAA-GGAAAAAGA
*
801705 GTGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAGA
1 GTGCCACGGAGTTGTGGACTTT-AAAAGGAAAAAGA
* *
801741 -TGCCACGGAGTTGTGGGCTTT-GAA--AAAAA-A
1 GTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGA
* *
801771 GTGCCACGGAGTCGTGGACTTTGAAAA-TAAAAAG-
1 GTGCCACGGAGTTGTGGACTTT-AAAAGGAAAAAGA
* * *
801805 GTGCCACAGAGTCGTGGACTTT-GAA-G-AAAAGA
1 GTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGA
* * *
801837 GATGCCACTGAGTCGTGAACTTT
1 G-TGCCACGGAGTTGTGGACTTT
801860 GAGAAAGTAT
Statistics
Matches: 245, Mismatches: 24, Indels: 38
0.80 0.08 0.12
Matches are distributed among these distances:
30 20 0.08
31 29 0.12
32 30 0.12
33 42 0.17
34 74 0.30
35 36 0.15
36 10 0.04
37 4 0.02
ACGTcount: A:0.33, C:0.15, G:0.31, T:0.21
Consensus pattern (35 bp):
GTGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGA
Found at i:801727 original size:101 final size:100
Alignment explanation
Indices: 801541--801791 Score: 282
Period size: 101 Copynumber: 2.5 Consensus size: 100
801531 GAAAAGAAGG
* * * * * * *
801541 TGCCACGGAGTCGTGGACTTTGAGACAAAA-TGCCACTGAGTCGTGGGCTTTGAGAA--GAA-AA
1 TGCCACGGAGTTGTGGACTTTAAAAAAAAAGTGCCACAGAGTCGTGGAC-TT-AAAACGGAAGAA
* *
801602 AAGTGCCACGGAGTTGTGGGCTTT-AAAGG-AAAAGG
64 GAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGA
801637 TGCCACGGAGTTGTGGACTTTAAAAGGAAAAAGATGCCACAGAGAT-GTGGACTTAAAACGGAAG
1 TGCCACGGAGTTGTGGACTTTAAAA--AAAAAG-TGCCACAGAG-TCGTGGACTTAAAACGGAAG
801701 AAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGGAAAAAGA
62 AAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGGAAAAAGA
* * *
801741 TGCCACGGAGTTGTGGGCTTTGAAAAAAAAGTGCCACGGAGTCGTGGACTT
1 TGCCACGGAGTTGTGGACTTTAAAAAAAAAGTGCCACAGAGTCGTGGACTT
801792 TGAAAATAAA
Statistics
Matches: 131, Mismatches: 12, Indels: 19
0.81 0.07 0.12
Matches are distributed among these distances:
96 22 0.17
98 7 0.05
99 2 0.02
100 18 0.14
101 43 0.33
102 6 0.05
103 5 0.04
104 28 0.21
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.20
Consensus pattern (100 bp):
TGCCACGGAGTTGTGGACTTTAAAAAAAAAGTGCCACAGAGTCGTGGACTTAAAACGGAAGAAGA
GTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGA
Found at i:801738 original size:135 final size:135
Alignment explanation
Indices: 801477--801825 Score: 382
Period size: 135 Copynumber: 2.6 Consensus size: 135
801467 TTGAGACAAA
* * * * * *
801477 ATGCCACTGAGTCGTGGGCTTTGAAAAGAAGGTTGCCACTGAGTCGTGGGCTTTGAAAAG---AA
1 ATGCCACGGAGTTGTGGGCTTTGAAAAAAAAG-TGCCACGGAGTCGTGGACTTTGAAAAGAAAAA
* * ** * * *
801539 GGTGCCACGGAGTCGTGGACTT-TGA--GACA-AA-A-TGCCACTGAGTCGTGGGCTTTGAGAAG
65 GATGCCACAGAGTCGTGGACTTAAAACGGA-AGAAGAGTGCCACGGAGTCGTGGGCTTTAAAAAG
801598 AAAAAAG
129 AAAAAAG
* *
801605 -TGCCACGGAGTTGTGGGCTTT-AAAGGAAAAGGTGCCACGGAGTTGTGGACTTT-AAAAGGAAA
1 ATGCCACGGAGTTGTGGGCTTTGAAA--AAAAAGTGCCACGGAGTCGTGGACTTTGAAAA-GAAA
*
801667 AAGATGCCACAGAGAT-GTGGACTTAAAACGGAAGAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
63 AAGATGCCACAGAG-TCGTGGACTTAAAACGGAAGAAGAGTGCCACGGAGTCGTGGGCTTTAAAA
*
801731 AGGAAAAAG
127 AGAAAAAAG
*
801740 ATGCCACGGAGTTGTGGGCTTTGAAAAAAAAGTGCCACGGAGTCGTGGACTTTGAAAATAAAAAG
1 ATGCCACGGAGTTGTGGGCTTTGAAAAAAAAGTGCCACGGAGTCGTGGACTTTGAAAAGAAAAAG
*
801805 GTGCCACAGAGTCGTGGACTT
66 ATGCCACAGAGTCGTGGACTT
801826 TGAAGAAAAG
Statistics
Matches: 185, Mismatches: 19, Indels: 27
0.80 0.08 0.12
Matches are distributed among these distances:
126 7 0.04
127 38 0.21
128 5 0.03
130 20 0.11
131 2 0.01
132 1 0.01
133 4 0.02
134 2 0.01
135 78 0.42
136 25 0.14
137 3 0.02
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (135 bp):
ATGCCACGGAGTTGTGGGCTTTGAAAAAAAAGTGCCACGGAGTCGTGGACTTTGAAAAGAAAAAG
ATGCCACAGAGTCGTGGACTTAAAACGGAAGAAGAGTGCCACGGAGTCGTGGGCTTTAAAAAGAA
AAAAG
Found at i:803172 original size:10 final size:10
Alignment explanation
Indices: 803159--803189 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
803149 CCTTTTTCTA
803159 TTTTTTTTTG
1 TTTTTTTTTG
*
803169 TTTTGTTTTG
1 TTTTTTTTTG
803179 TTTTTTTTTG
1 TTTTTTTTTG
803189 T
1 T
803190 GTTTACTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:803177 original size:22 final size:22
Alignment explanation
Indices: 803152--803193 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
803142 CTTTGCACCT
803152 TTTTCTATTTTTTTT-TGTTTTG
1 TTTTCT-TTTTTTTTGTGTTTTG
*
803174 TTTTGTTTTTTTTTGTGTTT
1 TTTTCTTTTTTTTTGTGTTT
803194 ACTTTTGACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.83
Consensus pattern (22 bp):
TTTTCTTTTTTTTTGTGTTTTG
Found at i:803199 original size:22 final size:20
Alignment explanation
Indices: 803159--803200 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
803149 CCTTTTTCTA
*
803159 TTTTTTTTTGTTTTGTTTTG
1 TTTTTTTTTGTTTTCTTTTG
803179 TTTTTTTTTGTGTTTACTTTTG
1 TTTTTTTTTGT-TTT-CTTTTG
803201 ACTTTTTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 3 0.16
22 5 0.26
ACGTcount: A:0.02, C:0.02, G:0.14, T:0.81
Consensus pattern (20 bp):
TTTTTTTTTGTTTTCTTTTG
Found at i:803879 original size:21 final size:21
Alignment explanation
Indices: 803853--803893 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
803843 ATGCCTTCGG
803853 GCAAAGGCAAGTAGGTTTTCA
1 GCAAAGGCAAGTAGGTTTTCA
803874 GCAAAGGCAAGTAGGTTTTC
1 GCAAAGGCAAGTAGGTTTTC
803894 TTGATATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (21 bp):
GCAAAGGCAAGTAGGTTTTCA
Found at i:806644 original size:13 final size:13
Alignment explanation
Indices: 806626--806650 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
806616 CATAAAATGT
806626 TGTATCGATACAA
1 TGTATCGATACAA
806639 TGTATCGATACA
1 TGTATCGATACA
806651 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:806648 original size:33 final size:33
Alignment explanation
Indices: 806606--806672 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
806596 TTCAACGATT
806606 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
806639 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
806672 T
1 T
806673 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:806731 original size:13 final size:13
Alignment explanation
Indices: 806713--806737 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
806703 ATTACTCAAA
806713 TGTATCGATACAT
1 TGTATCGATACAT
806726 TGTATCGATACA
1 TGTATCGATACA
806738 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:810682 original size:57 final size:57
Alignment explanation
Indices: 810365--811276 Score: 1217
Period size: 57 Copynumber: 16.0 Consensus size: 57
810355 TTTAAAAAAA
* * *
810365 GGTGCCACTAACTTGTGTGGGCTTTGAAAAGAGTTGCCACTAACTTGTGTAGGCTTTGAAAG
1 GGTGCCACTGAC-T-TGTGGGCTTTGAAAGGAG-TGCCACTGACTTGTG--GGCTTTGAAAG
* * * * *
810427 GGTGCCACTAACTTATGGGCTCTGAAAGAAGTGCCGCTGACTTGTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGAC-T-TGTGGGCTTTGAAAG
* * *
810486 GGTACCACTGACTTGTGGGCTTTGAAA-GAATGCCACTAACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
* * * *
810542 GATGCCACTGACTTGTGGGCTTTGAAAGG-GTTCCACTGACTCGTGGGCTTTGAATG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
** * *
810598 GGTGCCACTGACTCATGGGCTTTGAAAGGA-TGCCATTGACTTGTGGGCTTTAAAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTT-GAAAG
* *
810655 AGTCCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
810711 GGTGCCAATGACTTGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGTTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
** * *
810767 AATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
*
810824 GGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
** *
810881 GGTGCCACTGACTTGTGGGC-TTGAAAAAAAGTGCCACTAACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTG-AAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
810938 GGTGCCACTAACTTATGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
* * * *
810995 GATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
* * * *
811052 GATGCCACTGACTTATGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTTAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
* *
811109 GGTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
* * * * * *
811166 GGTGCCACTAACTTGTGGTCTTTGAAAAGAATGCCACTAACTTGTGAGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
* *
811223 GATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGGCTTTGAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAA
811277 GAGATGAACG
Statistics
Matches: 767, Mismatches: 75, Indels: 22
0.89 0.09 0.03
Matches are distributed among these distances:
56 212 0.28
57 469 0.61
58 12 0.02
59 42 0.05
60 15 0.02
61 5 0.01
62 12 0.02
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (57 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAG
Found at i:811282 original size:28 final size:28
Alignment explanation
Indices: 810362--811276 Score: 1132
Period size: 28 Copynumber: 32.1 Consensus size: 28
810352 TTTTTTAAAA
*
810362 AAAGG-TGCCACTAACTTGTGTGGGCTTTG
1 AAAGGATGCCACTGAC-T-TGTGGGCTTTG
* *
810391 AAAAGAGTTGCCACTAACTTGTGTAGGCTTTG
1 -AAAG-GATGCCACTGACTTGTG--GGCTTTG
* * * *
810423 AAAGGGTGCCACTAACTTATGGGCTCTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
810451 AAAGAAGTGCCGCTGACTTGTGTGGGCTTTG
1 AAAGGA-TGCCACTGAC-T-TGTGGGCTTTG
* *
810482 AAAGGGTACCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
810510 AAAGAATGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
810538 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
810566 AAAGGGTTCCACTGACTCGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * **
810594 AATGGGTGCCACTGACTCATGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
810622 AAAGGATGCCATTGACTTGTGGGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
810650 AAAAGAGTCCCACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
810679 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
810707 AAAGGGTGCCAATGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
810735 AAAGGATGCCACTGACTTGTGGGTTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
** *
810763 AAAAAATGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
810791 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
*
810820 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
810848 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
*
810877 AAAGGGTGCCACTGACTTGTGGGC-TTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
** *
810904 AAAAAAAGTGCCACTAACTTGTGGGCTTTG
1 -AAAGGA-TGCCACTGACTTGTGGGCTTTG
* * *
810934 AAAGGGTGCCACTAACTTATGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
810962 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
*
810991 AAAGGATGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
811019 AAAAGAGTGCCACTGACTTGTGGGCTTTA
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
*
811048 AAAGGATGCCACTGACTTATGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
811076 AAAAGAGTGCCACTGACTTGTGGGCTTTT
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
* *
811105 AAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
811133 AAAAGAGTGCCACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
* * *
811162 AAAGGGTGCCACTAACTTGTGGTCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
811190 AAAAGAATGCCACTAACTTGTGAGCTTTG
1 -AAAGGATGCCACTGACTTGTGGGCTTTG
811219 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
811247 AAAGGATGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
811275 AA
1 AA
811277 GAGATGAACG
Statistics
Matches: 771, Mismatches: 96, Indels: 38
0.85 0.11 0.04
Matches are distributed among these distances:
27 3 0.00
28 470 0.61
29 227 0.29
30 35 0.05
31 19 0.02
32 17 0.02
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.29
Consensus pattern (28 bp):
AAAGGATGCCACTGACTTGTGGGCTTTG
Found at i:812465 original size:89 final size:89
Alignment explanation
Indices: 812304--812484 Score: 308
Period size: 89 Copynumber: 2.0 Consensus size: 89
812294 CAAGATTTTT
812304 CCCGAACAATCAACATGACCAGTGTGAGCTGACCTTCGGAAGATCCCTAAGATTGCTCCACATCG
1 CCCGAACAATCAACATGACCAGTGTGAGCTGACCTTCGGAAGATCCCTAAGATTGCTCCACATCG
* *
812369 TTTTATAGACATTCGTGGTATATG
66 TTCTATAGACATTCGTAGTATATG
* *
812393 CCCGAACAATCAACATGACCAGTGTGAGCTGACCTTCGGAAGATCCCTAAGATTGCTCCGCATTG
1 CCCGAACAATCAACATGACCAGTGTGAGCTGACCTTCGGAAGATCCCTAAGATTGCTCCACATCG
* *
812458 TTCTATAGACCTTCTTAGTATATG
66 TTCTATAGACATTCGTAGTATATG
812482 CCC
1 CCC
812485 CGTTAGGATC
Statistics
Matches: 86, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 86 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (89 bp):
CCCGAACAATCAACATGACCAGTGTGAGCTGACCTTCGGAAGATCCCTAAGATTGCTCCACATCG
TTCTATAGACATTCGTAGTATATG
Found at i:812602 original size:19 final size:17
Alignment explanation
Indices: 812584--812649 Score: 53
Period size: 20 Copynumber: 3.6 Consensus size: 17
812574 GACCCCTTTC
812584 TATTTTTTATTATTTTTT
1 TATTTTTT-TTATTTTTT
*
812602 CT-TGGTTTTTTTGTTTTTTT
1 -TAT--TTTTTTT-ATTTTTT
*
812622 GTTTTTTTTTTATTTTTT
1 -TATTTTTTTTATTTTTT
812640 TATTTTTTTT
1 TATTTTTTTT
812650 GGAGATGACA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
17 9 0.23
18 7 0.18
19 10 0.26
20 12 0.31
21 1 0.03
ACGTcount: A:0.08, C:0.02, G:0.06, T:0.85
Consensus pattern (17 bp):
TATTTTTTTTATTTTTT
Found at i:812611 original size:1 final size:1
Alignment explanation
Indices: 812607--812649 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
812597 TTTTTCTTGG
* * * *
812607 TTTTTTTGTTTTTTTGTTTTTTTTTTATTTTTTTATTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
812650 GGAGATGACA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.05, C:0.00, G:0.05, T:0.91
Consensus pattern (1 bp):
T
Found at i:812772 original size:79 final size:78
Alignment explanation
Indices: 812659--812887 Score: 271
Period size: 79 Copynumber: 2.9 Consensus size: 78
812649 TGGAGATGAC
* *
812659 AACAGGGCTAGAGTATCCCCTGATTATGGAAAATCGGTGTTTTAGAAATAAAATTGGGGTTGGAG
1 AACAGGGTTAGAGTAT-CCCTGATTAT-GAAAATCGGTGTTTTAGAAATAAAATCGGGGTTGGAG
812724 TATCCCCTCGAAAAT
64 TATCCCCTCGAAAAT
* *
812739 AACAGGGTTAGAGCATCCCTGATTATAGAAAATCGGTGTTTT-GAAAATAAAATCGAGGTTGGAG
1 AACAGGGTTAGAGTATCCCTGATTAT-GAAAATCGGTGTTTTAG-AAATAAAATCGGGGTTGGAG
* *
812803 TATCCCCTTGAAGAT
64 TATCCCCTCGAAAAT
* * * ** * ** *
812818 AACGGGGTTGGAGTATCCCCGATTATGAAAAATCGAAGCTTTAGAAATAAAGCCAGGGTTGGAGT
1 AACAGGGTTAGAGTATCCCTGATTATG-AAAATCGGTGTTTTAGAAATAAAATCGGGGTTGGAGT
812883 ATCCC
65 ATCCC
812888 TGGTTGTGAG
Statistics
Matches: 128, Mismatches: 18, Indels: 7
0.84 0.12 0.05
Matches are distributed among these distances:
78 2 0.02
79 111 0.87
80 15 0.12
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (78 bp):
AACAGGGTTAGAGTATCCCTGATTATGAAAATCGGTGTTTTAGAAATAAAATCGGGGTTGGAGTA
TCCCCTCGAAAAT
Found at i:812902 original size:51 final size:51
Alignment explanation
Indices: 812822--812939 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 51
812812 GAAGATAACG
*
812822 GGGTTGGAGTATCCCCGATTATGAAAAATCGAA-GCTTTAGAAATAAAGCCA
1 GGGTTGGAGTATCCCCGATTATGAAAAATC-AATACTTTAGAAATAAAGCCA
* * * * * * *
812873 GGGTTGGAGTATCCCTGGTTGTGAGAAATCAATATTTTAGAAATAAAGTCG
1 GGGTTGGAGTATCCCCGATTATGAAAAATCAATACTTTAGAAATAAAGCCA
812924 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
812940 TCAGAAATAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
50 2 0.04
51 55 0.96
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCGATTATGAAAAATCAATACTTTAGAAATAAAGCCA
Found at i:815333 original size:20 final size:20
Alignment explanation
Indices: 815308--815362 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
815298 GTAAACCTAG
*
815308 AATGTATTGATACAGTCAAC
1 AATGTATTGATACAATCAAC
*
815328 AATGTATCT-ATACAATGAAC
1 AATGTAT-TGATACAATCAAC
815348 AATGTATTGATACAA
1 AATGTATTGATACAA
815363 ATTGTGAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (20 bp):
AATGTATTGATACAATCAAC
Found at i:816121 original size:87 final size:88
Alignment explanation
Indices: 816008--816261 Score: 329
Period size: 87 Copynumber: 2.9 Consensus size: 88
815998 AAGGGAAAAG
* * *
816008 AAGG-AAATAAAGTGCGTCCCGTTCTTTGAGGACAAAAGGAGAAAAGAAGGGAATGGAACGCGTC
1 AAGGAAAATAAAGT-CGTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGGAATGGAATGCGTC
* *
816072 ATGCTCTTTGAGGGCAAAGGAG-AA
65 CTGCTCTTTGAGGAC-AAGGAGAAA
* * *
816096 AAGGAAAATAAAGT-GTCCTGCTCTTTAAGGACAAAAGGAGAAAAAAAGGGAATGGAATGTGTCC
1 AAGGAAAATAAAGTCGTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGGAATGGAATGCGTCC
*
816160 TGCTCTTTGAGGACAAGGGGAAA
66 TGCTCTTTGAGGACAAGGAGAAA
* * *
816183 AAGGAAAATAAAGTGCGTCCTACTCTTTGAGGATAAAAGG-GAAAAGAAGGAAAT-GAAGTGCGT
1 AAGGAAAATAAAGT-CGTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGGAATGGAA-TGCGT
816246 CCTGCTCTTTGAGGAC
64 CCTGCTCTTTGAGGAC
816262 TAAGAGGTGC
Statistics
Matches: 146, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
86 5 0.03
87 75 0.51
88 36 0.25
89 30 0.21
ACGTcount: A:0.38, C:0.13, G:0.30, T:0.19
Consensus pattern (88 bp):
AAGGAAAATAAAGTCGTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGGAATGGAATGCGTCC
TGCTCTTTGAGGACAAGGAGAAA
Found at i:816244 original size:45 final size:46
Alignment explanation
Indices: 815977--816261 Score: 263
Period size: 46 Copynumber: 6.4 Consensus size: 46
815967 AAAGGAAAGT
* * *
815977 GTCCTGCTTTTTGAGAACTAGAAGG-GAAAAGAAGGAAATAAAGTGC
1 GTCCTGCTCTTTGAGGAC-AAAAGGAGAAAAGAAGGAAATAAAGTGC
* * * * *
816023 GTCCCGTTCTTTGAGGACAAAAGGAGAAAAGAAGGGAATGGAA-CGC
1 GTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGAAAT-AAAGTGC
* * *
816069 GTCATGCTCTTTGAGGGC-AAAGGAGAAAAG--GAAAATAAAGT--
1 GTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGAAATAAAGTGC
* * * * *
816110 GTCCTGCTCTTTAAGGACAAAAGGAGAAAAAAAGGGAATGGAA-TGT
1 GTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGAAAT-AAAGTGC
*
816156 GTCCTGCTCTTTGAGGAC--AAGG-GGAAA-AAGGAAAATAAAGTGC
1 GTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGG-AAATAAAGTGC
* * *
816199 GTCCTACTCTTTGAGGATAAAAGG-GAAAAGAAGGAAATGAAGTGC
1 GTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGAAATAAAGTGC
816244 GTCCTGCTCTTTGAGGAC
1 GTCCTGCTCTTTGAGGAC
816262 TAAGAGGTGC
Statistics
Matches: 191, Mismatches: 34, Indels: 29
0.75 0.13 0.11
Matches are distributed among these distances:
41 15 0.08
42 19 0.10
43 29 0.15
44 9 0.05
45 53 0.28
46 64 0.34
47 2 0.01
ACGTcount: A:0.38, C:0.13, G:0.29, T:0.20
Consensus pattern (46 bp):
GTCCTGCTCTTTGAGGACAAAAGGAGAAAAGAAGGAAATAAAGTGC
Found at i:816335 original size:60 final size:61
Alignment explanation
Indices: 816242--816872 Score: 891
Period size: 60 Copynumber: 10.4 Consensus size: 61
816232 GAAATGAAGT
* * * *
816242 GCGTCCTGCTCTTTGAGGACTAAGAGGTGCCACCAACTTGTATGGGCTTT-AAAGGAGAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * *
816302 GCGTCCTGCTCTTTGAGGACTATAAA-GTACCACCAACTTGTGTGAGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
*
816363 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAAC-TCTGTGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAG
* * *
816424 GTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAGAAGAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * ** * *
816484 GTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAATTTGTGTAAGCTTTGAAAG-AGAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* * *
816544 GCATCCTGCTCTTTGAGGACTAGAAA-GTACCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
*
816605 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAG
* * * *
816667 GTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAGGAGAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* *
816727 GCGTCCTGCTTTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
*
816788 GCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGCGTGGGCTTTGAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAG
* *
816849 ACGTCCTGCTCTTTAAGGACTAAA
1 GCGTCCTGCTCTTTGAGGACTAAA
816873 GGGCTAAATA
Statistics
Matches: 513, Mismatches: 45, Indels: 24
0.88 0.08 0.04
Matches are distributed among these distances:
60 243 0.47
61 199 0.39
62 71 0.14
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (61 bp):
GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
Found at i:816590 original size:182 final size:182
Alignment explanation
Indices: 816242--816872 Score: 941
Period size: 182 Copynumber: 3.5 Consensus size: 182
816232 GAAATGAAGT
* * * *
816242 GCGTCCTGCTCTTTGAGGACTAAGAGGTGCCACCAACTTGTATGGGCTTT-AAAGGAGAAGGCGT
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGGCGT
* * *
816306 CCTGCTCTTTGAGGACTATAAA-GTACCACCAACTTGTGTGAGCTTTAAAAGGAAAAGGCGTCCT
66 CCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGAGCTTTGAAA-GAGAAGGCGTCCT
*
816370 GCTCTTTGAGGACTA-AAAGGTGCCACCAAC-TCTGTGGGCTTTGAAAAGAAAAAG
129 GCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAG
* * *
816424 GTGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAGAAGAAGGTGT
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGGCGT
* * *
816488 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAATTTGTGTAAGCTTTGAAAGAGAAGGCATCCTGC
66 CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGAGCTTTGAAAGAGAAGGCGTCCTGC
* *
816553 TCTTTGAGGACTAGAAAGTACCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
131 TCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* *
816605 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGTG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGAAAAAGGCG
* *
816670 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAGGAGAAGGCGTCCTG
65 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGAGCTTTGAAAGAGAAGGCGTCCTG
* *
816735 CTTTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
130 CTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
* *
816788 GCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGCGTGGGCTTTGAAAAGAAAAAGACG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAGAAAAAGGCG
*
816852 TCCTGCTCTTTAAGGACTAAA
65 TCCTGCTCTTTGAGGACTAAA
816873 GGGCTAAATA
Statistics
Matches: 412, Mismatches: 31, Indels: 12
0.91 0.07 0.03
Matches are distributed among these distances:
181 98 0.24
182 173 0.42
183 141 0.34
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (182 bp):
GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAAGGCGT
CCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGAGCTTTGAAAGAGAAGGCGTCCTGC
TCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAG
Found at i:823184 original size:79 final size:79
Alignment explanation
Indices: 822993--823186 Score: 241
Period size: 79 Copynumber: 2.4 Consensus size: 79
822983 TGGAGATGAC
* * * *
822993 AACAGGGCTAGAGTATCCCCTGGTTATGGAAAATCGGTGTTTTAGAAATAAAATCGGGGTTGGAA
1 AACAGGGTTGGAGTATCCCC-GATTATGAAAAATCGGTGTTTTAGAAATAAAATCGGGGTTGGAA
823058 TATCCCCTCGGAAAT
65 TATCCCCTCGGAAAT
* *
823073 AACAGGGTTGGAGCATCCCTGATTAT-AGAAAATCGGTGTTTT-GAAAATAAAATCGGGGTTGGA
1 AACAGGGTTGGAGTATCCCCGATTATGA-AAAATCGGTGTTTTAG-AAATAAAATCGGGGTTGGA
* * *
823136 GTATTCCCTC-GAAGGT
64 ATATCCCCTCGGAA-AT
*
823152 AACGGGGTTGGAGTATCCCCGATTATGAAAAATCG
1 AACAGGGTTGGAGTATCCCCGATTATGAAAAATCG
823187 AAGCTTTAGA
Statistics
Matches: 98, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.04
79 77 0.79
80 17 0.17
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (79 bp):
AACAGGGTTGGAGTATCCCCGATTATGAAAAATCGGTGTTTTAGAAATAAAATCGGGGTTGGAAT
ATCCCCTCGGAAAT
Found at i:823235 original size:50 final size:51
Alignment explanation
Indices: 823154--823272 Score: 152
Period size: 50 Copynumber: 2.4 Consensus size: 51
823144 TCGAAGGTAA
* *
823154 CGGGGTTGGAGTATCCCCGATTATGAAAAATCGAA-GCTTTAG-AATAAGGC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATC-AATACTTTAGAAATAAAGC
* * * * *
823204 CGGGGTTGGAGTATCCCTGGTTGTGAGAAATCAATATTTTAGAAATAAAGC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATACTTTAGAAATAAAGC
823255 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
823273 TCGTAAATAA
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
49 2 0.03
50 33 0.56
51 24 0.41
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATCAATACTTTAGAAATAAAGC
Found at i:823307 original size:129 final size:130
Alignment explanation
Indices: 823117--823350 Score: 346
Period size: 129 Copynumber: 1.8 Consensus size: 130
823107 GGTGTTTTGA
* * * *
823117 AAATAAAATCGGGGTTGGAGTATTCCCTCGAAGGTAACGGGGTTGGAGTATCCCCGATTATGAAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGAAGATAACGGGGTTAGAGTATCCCCGATTATGAAA
**
823182 AATCGAAGCTTTAG-AATAAGGCCGGGGTTGGAGTATCCCTGGTTGTGAGAAATCAATATTTTAG
66 AATCGAAGCTTTAGAAATAAAACCGGGGTTGGAGTATCCCTGGTTGTGAGAAATCAATATTTTAG
* *
823246 AAATAAAGCCGGGGTTGGAGTATCCCCTCGTAA-ATAACGGGGTTAGAGTATCCTCGATTATGAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCG-AAGATAACGGGGTTAGAGTATCCCCGATTATGAA
* * *
823310 AAATCGATGTTTTGGAAATAAAACCGGGGTTGGAGTATCCC
65 AAATCGAAGCTTTAGAAATAAAACCGGGGTTGGAGTATCCC
823351 CAAGATGAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
129 67 0.73
130 25 0.27
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (130 bp):
AAATAAAACCGGGGTTGGAGTATCCCCTCGAAGATAACGGGGTTAGAGTATCCCCGATTATGAAA
AATCGAAGCTTTAGAAATAAAACCGGGGTTGGAGTATCCCTGGTTGTGAGAAATCAATATTTTAG
Found at i:823337 original size:79 final size:79
Alignment explanation
Indices: 823204--823351 Score: 208
Period size: 79 Copynumber: 1.9 Consensus size: 79
823194 AGAATAAGGC
* * * * *
823204 CGGGGTTGGAGTATCCCTGGTTGTGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTAGAGTATCCCTGATTATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
823269 CCCCTCGTAAATAA
66 CCCCTCGTAAATAA
* * *
823283 CGGGGTTAGAGTAT-CCTCGATTATGAAAAATCGATGTTTTGGAAATAAAACCGGGGTTGGAGTA
1 CGGGGTTAGAGTATCCCT-GATTATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTA
823347 TCCCC
65 TCCCC
823352 AAGATGAAAA
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
78 3 0.05
79 57 0.95
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.28
Consensus pattern (79 bp):
CGGGGTTAGAGTATCCCTGATTATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTAT
CCCCTCGTAAATAA
Found at i:830475 original size:14 final size:15
Alignment explanation
Indices: 830448--830480 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
830438 GCATCTCTAT
830448 TAAACTAAACAAAAA
1 TAAACTAAACAAAAA
*
830463 TAAA-TAAATAAAAA
1 TAAACTAAACAAAAA
830477 TAAA
1 TAAA
830481 ACCACCGACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (15 bp):
TAAACTAAACAAAAA
Found at i:832291 original size:32 final size:32
Alignment explanation
Indices: 832216--832291 Score: 107
Period size: 32 Copynumber: 2.4 Consensus size: 32
832206 ATATTGCTTA
* * *
832216 ATATCGATACAATGTATCGATATATGTCCTTT
1 ATATCGATACATTGTATCGATAAATGTCCTCT
* *
832248 GTATCGATACATTGTATCGATAAATGTTCTCT
1 ATATCGATACATTGTATCGATAAATGTCCTCT
832280 ATATCGATACAT
1 ATATCGATACAT
832292 ACTTAATTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (32 bp):
ATATCGATACATTGTATCGATAAATGTCCTCT
Found at i:832306 original size:20 final size:20
Alignment explanation
Indices: 832281--832351 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
832271 ATGTTCTCTA
832281 TATCGATACATACTTAATTG
1 TATCGATACATACTTAATTG
* *
832301 TATCGATACAT-GTT-CTCTG
1 TATCGATACATACTTAAT-TG
*
832320 TATCGATACACACTTAATTG
1 TATCGATACATACTTAATTG
*
832340 TATCAATACATA
1 TATCGATACATA
832352 AAACTGGCAG
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
18 1 0.02
19 14 0.34
20 25 0.61
21 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (20 bp):
TATCGATACATACTTAATTG
Found at i:832323 original size:19 final size:19
Alignment explanation
Indices: 832260--832329 Score: 79
Period size: 19 Copynumber: 3.6 Consensus size: 19
832250 ATCGATACAT
*
832260 TGTATCGATAAATGTTCTC
1 TGTATCGATACATGTTCTC
* * *
832279 TATATCGATACATACTTAAT-
1 TGTATCGATACAT-GTT-CTC
832299 TGTATCGATACATGTTCTC
1 TGTATCGATACATGTTCTC
832318 TGTATCGATACA
1 TGTATCGATACA
832330 CACTTAATTG
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
18 1 0.02
19 25 0.61
20 14 0.34
21 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATGTTCTC
Found at i:832349 original size:39 final size:39
Alignment explanation
Indices: 832258--832350 Score: 150
Period size: 39 Copynumber: 2.4 Consensus size: 39
832248 GTATCGATAC
* *
832258 ATTGTATCGATAAATGTTCTCTATATCGATACATACTTA
1 ATTGTATCGATACATGTTCTCTATATCGATACACACTTA
*
832297 ATTGTATCGATACATGTTCTCTGTATCGATACACACTTA
1 ATTGTATCGATACATGTTCTCTATATCGATACACACTTA
*
832336 ATTGTATCAATACAT
1 ATTGTATCGATACAT
832351 AAAACTGGCA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.40
Consensus pattern (39 bp):
ATTGTATCGATACATGTTCTCTATATCGATACACACTTA
Found at i:834804 original size:16 final size:16
Alignment explanation
Indices: 834783--834821 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
834773 ACTTAGAGGC
834783 AATTCTTGTTTGTACA
1 AATTCTTGTTTGTACA
834799 AATTCTTGTTTGTACA
1 AATTCTTGTTTGTACA
834815 AATTCTT
1 AATTCTT
834822 TATTTAGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.26, C:0.13, G:0.10, T:0.51
Consensus pattern (16 bp):
AATTCTTGTTTGTACA
Found at i:837650 original size:31 final size:29
Alignment explanation
Indices: 837588--837650 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
837578 GATTTTGTTT
* *
837588 TGTTGTTGAATAAATTTTGATGTTTATTA
1 TGTTGTTGAATAAATTATGATGTTTAGTA
* *
837617 TGTTGTGTGAATGAATTATGCATGTTTGGTA
1 TGTTGT-TGAATAAATTATG-ATGTTTAGTA
837648 TGT
1 TGT
837651 ATTAGGGTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 6 0.21
30 11 0.39
31 11 0.39
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.51
Consensus pattern (29 bp):
TGTTGTTGAATAAATTATGATGTTTAGTA
Found at i:839740 original size:22 final size:21
Alignment explanation
Indices: 839702--839749 Score: 71
Period size: 23 Copynumber: 2.2 Consensus size: 21
839692 GGGGAGAAAT
839702 AGAAATTTTTATTAA-GGGGG
1 AGAAATTTTTATTAAGGGGGG
839722 AGAAATTATTTAATTAAGGGGGG
1 AGAAATT-TTT-ATTAAGGGGGG
839745 AGAAA
1 AGAAA
839750 AATGAAAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 7 0.28
21 3 0.12
22 5 0.20
23 10 0.40
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (21 bp):
AGAAATTTTTATTAAGGGGGG
Found at i:840429 original size:33 final size:33
Alignment explanation
Indices: 840387--840455 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 33
840377 CTACCACTAT
840387 TTGTATCGATACATGGTAT-AA-TATATCGATACA
1 TTGTATCGATACAT-G-ATGAATTATATCGATACA
840420 TTGTATCGATACATGATGAATTATATCGATACA
1 TTGTATCGATACATGATGAATTATATCGATACA
840453 TTG
1 TTG
840456 CTTGTAATGG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
31 2 0.06
32 3 0.09
33 29 0.85
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.38
Consensus pattern (33 bp):
TTGTATCGATACATGATGAATTATATCGATACA
Found at i:845724 original size:13 final size:13
Alignment explanation
Indices: 845706--845730 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
845696 TGTGTTCTTA
845706 GTATCGATACATT
1 GTATCGATACATT
845719 GTATCGATACAT
1 GTATCGATACAT
845731 AGGCAGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:847713 original size:25 final size:25
Alignment explanation
Indices: 847680--847729 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
847670 AGAGAAAAAA
*
847680 ATTTTATTAAGAGGGAGTATTAAAT
1 ATTTCATTAAGAGGGAGTATTAAAT
*
847705 ATTTCATTAAGGGGGAGTATTAAAT
1 ATTTCATTAAGAGGGAGTATTAAAT
847730 TGAAAATTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.02, G:0.22, T:0.38
Consensus pattern (25 bp):
ATTTCATTAAGAGGGAGTATTAAAT
Found at i:849172 original size:21 final size:22
Alignment explanation
Indices: 849143--849197 Score: 85
Period size: 21 Copynumber: 2.5 Consensus size: 22
849133 CAGTGACTTG
*
849143 TGAACAGTGATGTATCGATACA
1 TGAACAGTGATGTATCGATAAA
*
849165 TGAA-AGTGATATATCGATAAA
1 TGAACAGTGATGTATCGATAAA
849186 TGAACAGTGATG
1 TGAACAGTGATG
849198 AATAGTGATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 19 0.66
22 10 0.34
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.27
Consensus pattern (22 bp):
TGAACAGTGATGTATCGATAAA
Found at i:849204 original size:10 final size:10
Alignment explanation
Indices: 849185--849215 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
849175 ATATCGATAA
849185 ATGAACAGTG
1 ATGAACAGTG
*
849195 ATGAATAGTG
1 ATGAACAGTG
849205 ATGAACAGTG
1 ATGAACAGTG
849215 A
1 A
849216 AAAATGAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.29, T:0.23
Consensus pattern (10 bp):
ATGAACAGTG
Found at i:849304 original size:53 final size:53
Alignment explanation
Indices: 849240--849376 Score: 247
Period size: 53 Copynumber: 2.6 Consensus size: 53
849230 CTACTACCAA
849240 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
849293 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
849346 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
849377 TATGCAATTT
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 67 0.84
54 13 0.16
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:849409 original size:20 final size:20
Alignment explanation
Indices: 849346--849416 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
849336 GCCAATGTCC
**
849346 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
849366 TGTATCGATAC-TATGCAATT
1 TGTATCGATACATAT-TAATG
849386 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
849406 TGTATCGATAC
1 TGTATCGATAC
849417 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:849480 original size:21 final size:21
Alignment explanation
Indices: 849456--849496 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
849446 GTCAACCTTG
849456 TGTATTAATATCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
849477 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
849497 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.41
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:849872 original size:21 final size:20
Alignment explanation
Indices: 849848--849899 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
849838 TGATACATTA
*
849848 TATCGATACATACTTGAATTG
1 TATCGATACATACGT-AATTG
* *
849869 TATCGATACATAGGTATTTG
1 TATCGATACATACGTAATTG
849889 TATCGATACAT
1 TATCGATACAT
849900 TGAGCCTAAC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.38
Consensus pattern (20 bp):
TATCGATACATACGTAATTG
Found at i:850431 original size:20 final size:19
Alignment explanation
Indices: 850387--850437 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
850377 GTATCACTGC
* * *
850387 ATTGTATCGATACATGTTC
1 ATTGTATCAATACATGATA
850406 ATTGTATCAATACATGCATA
1 ATTGTATCAATACATG-ATA
850426 ATTGTATCAATA
1 ATTGTATCAATA
850438 TATAAAACTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (19 bp):
ATTGTATCAATACATGATA
Found at i:852098 original size:15 final size:15
Alignment explanation
Indices: 852078--852108 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
852068 ATCAAAGATA
852078 ATGATGATAATGATG
1 ATGATGATAATGATG
852093 ATGATGATAATGATG
1 ATGATGATAATGATG
852108 A
1 A
852109 AGTTGACTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.26, T:0.32
Consensus pattern (15 bp):
ATGATGATAATGATG
Found at i:855525 original size:34 final size:35
Alignment explanation
Indices: 855487--855553 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
855477 CCTTACAACA
855487 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
855521 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
855554 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:856016 original size:20 final size:20
Alignment explanation
Indices: 855991--856042 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
855981 TACAAGCCAA
**
855991 TGTATCGATACAATTTTTGG
1 TGTATCGATACAATACTTGG
856011 TGTATCGATAC-ATACTTGG
1 TGTATCGATACAATACTTGG
856030 TGTATCGATACAA
1 TGTATCGATACAA
856043 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.38
Consensus pattern (20 bp):
TGTATCGATACAATACTTGG
Found at i:856048 original size:19 final size:18
Alignment explanation
Indices: 855991--856048 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 18
855981 TACAAGCCAA
855991 TGTATCGATACAATTTTTGG
1 TGTATCGATACAA--TTTGG
*
856011 TGTATCGATACATACTTGG
1 TGTATCGATACA-ATTTGG
856030 TGTATCGATACAAGTTTGG
1 TGTATCGATACAA-TTTGG
856049 CTACTGCCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 1 0.03
19 20 0.59
20 12 0.35
21 1 0.03
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.40
Consensus pattern (18 bp):
TGTATCGATACAATTTGG
Found at i:857749 original size:13 final size:13
Alignment explanation
Indices: 857731--857770 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
857721 ACAATGTTCT
*
857731 TTGTATCAATACA
1 TTGTATCGATACA
*
857744 TTGTATCGACACA
1 TTGTATCGATACA
*
857757 ATGTATCGATACA
1 TTGTATCGATACA
857770 T
1 T
857771 GGGTTACTAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:861677 original size:573 final size:571
Alignment explanation
Indices: 860616--861685 Score: 1441
Period size: 573 Copynumber: 1.9 Consensus size: 571
860606 CAAGAGATCA
*
860616 AAGCATTCAAAGTTTTACTTATTTTCTCATTTTCAAGAGCTTTTACATTCATTGTTGTTATTCTT
1 AAGCATTCAAAGTTTTACTCATTTTCTCATTTTCAAGAGCTTTTACATTCATTGTTGTTATTCTT
* * * * *
860681 TGAAAGCTCTTTGTTTTTAATTTGTGTTTATTCTTTCACAAACATCAGCCTATTTAGAGGCAATT
66 TGAAAGCTCTTTGTTTCT-ATTTGTGCTTATACTTTCACAAACACCAGCCTACTTAGAGGCAATT
* * * *
860746 TTCATTTGTACAATTTTCTTGAATTGTATAAGGTTGCATTCAACCTTGGGTTACGATTTCTCAAG
130 TTCATTTGTACAATTTTCTTGAATTATAAAAGGTTGCATTCAACCTTGGGTTACAATCTCTCAAG
* * ** * *
860811 AATTTGGGGTATAATTCTTGGAGGGATCGTGGGGTTTTTATCTTAGCCTTGAAAAGATAAAGTGT
195 AATTTGGAGTATAATTCTTGGAGAGATCAAGAGGTTCTTATCTTAGCCTTGAAAAGATAAAGTGT
* *
860876 TGTAAGGTTATACCTTTCCTAAAAGGTAAAACAATTCGTGTAGTGAATTGTGGTAACACTCGACA
260 TGTAAGGTTATACCTTTCCTAAAAGGTAAAACAATTCGAGTAGTGAATTATGGTAACACTCGACA
** * *
860941 GGGAAGTGTCAAGGAGAGAGGACGTAGGTGCCATGTTTGGACTGAACCTCTATAAATTCTTATGT
325 AAGAAGTGTCAAGGAGAGAGGACGTAGGTGCCATGTTTGGACCGAACCTCTATAAATACTTATGT
* * *
861006 CAAGCCTTCTCATTTCCTTTTACTCTTTACTTTCAAGTTGTTTTTGAACCAATTTCTTCAAAACC
390 CAAGCCTTCTCATTTCC-TCTACTCTTTACTTTCAAGTTGTTTATGAACAAATTTCTTCAAAACC
* *
861071 TTTAAATTTTGAAAAGAACCAATTCACCCCCTCTTGGTTCATCCATTCCTAGAGCTTTCCATGTG
454 TTTAAATTTTCAAAAGAACCAATTCACCCCCTCTTGATTCATCCATTCCTAGAGCTTTCCATGTG
861136 AGTTTTCAACAATTGAAGAACAACAAGAATCAATAAGAAAGATCAAGAAAGCC
519 AGTTTTCAACAATTGAAGAACAACAAGAATCAATAAGAAAGATCAAGAAAGCC
*
861189 AAGCATTCAAAGTTTTA-TCATTTTCTACA-TTTCAAAGAGCTTTTATATTCATTGTTGTTATTC
1 AAGCATTCAAAGTTTTACTCATTTTCT-CATTTTC-AAGAGCTTTTACATTCATTGTTGTTATTC
*
861252 TTTGAAAGCTCATTTGTATTCT-TTTGTGCTTGTACTTTCACAAACACCAGCCTACTTAGAGGC-
64 TTTGAAAGCTC-TTTGT-TTCTATTTGTGCTTATACTTTCACAAACACCAGCCTACTTAGAGGCA
** * *
861315 ATTTCTGTTTTGTTA-AA-TTTCTTTGTATTATAAAAGGTTGTATTCAACCTT-GGTATACAATC
127 ATTT-TCATTTG-TACAATTTTC-TTGAATTATAAAAGGTTGCATTCAACCTTGGGT-TACAATC
* *
861377 TCTTAAGAATTTGGAGTATAATTCTTGGAGAGATTAAGAGGTTCTTATCTTAGCCTTGAAAAGAT
188 TCTCAAGAATTTGGAGTATAATTCTTGGAGAGATCAAGAGGTTCTTATCTTAGCCTTGAAAAGAT
* * *
861442 -AAGTGTTGTAAGGTTATATCTTTGCTTGAAAGGT-AAACAATTCGAGTAGTGAATTATGGTATA
253 AAAGTGTTGTAAGGTTATACCTTT-CCTAAAAGGTAAAACAATTCGAGTAGTGAATTATGGTA-A
* *
861505 CGCTCGACAAAGAAGTGTCAAGGAGAGAGGACGTAGGTGCCGTGTTTGGACCGAACCTCTATAAA
316 CACTCGACAAAGAAGTGTCAAGGAGAGAGGACGTAGGTGCCATGTTTGGACCGAACCTCTATAAA
* * * *
861570 TACTTGTGTCAAGCTTTCTCTTTTCC-CTACTCTTTTTA-TCTTCGAA-TTGTTTATGAATAAA-
381 TACTTATGTCAAGCCTTCTCATTTCCTCTACTC--TTTACT-TTC-AAGTTGTTTATGAACAAAT
* * *
861631 TTCTTTCAAAACC-TT-CATTTGTCAATAAGAACTAATTCATCCCCTCTTGATTCAT
442 TTC-TTCAAAACCTTTAAATTT-TCAA-AAGAACCAATTCACCCCCTCTTGATTCAT
861686 TCAATCCTTA
Statistics
Matches: 433, Mismatches: 47, Indels: 34
0.84 0.09 0.07
Matches are distributed among these distances:
571 9 0.02
572 79 0.18
573 333 0.77
574 9 0.02
575 3 0.01
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (571 bp):
AAGCATTCAAAGTTTTACTCATTTTCTCATTTTCAAGAGCTTTTACATTCATTGTTGTTATTCTT
TGAAAGCTCTTTGTTTCTATTTGTGCTTATACTTTCACAAACACCAGCCTACTTAGAGGCAATTT
TCATTTGTACAATTTTCTTGAATTATAAAAGGTTGCATTCAACCTTGGGTTACAATCTCTCAAGA
ATTTGGAGTATAATTCTTGGAGAGATCAAGAGGTTCTTATCTTAGCCTTGAAAAGATAAAGTGTT
GTAAGGTTATACCTTTCCTAAAAGGTAAAACAATTCGAGTAGTGAATTATGGTAACACTCGACAA
AGAAGTGTCAAGGAGAGAGGACGTAGGTGCCATGTTTGGACCGAACCTCTATAAATACTTATGTC
AAGCCTTCTCATTTCCTCTACTCTTTACTTTCAAGTTGTTTATGAACAAATTTCTTCAAAACCTT
TAAATTTTCAAAAGAACCAATTCACCCCCTCTTGATTCATCCATTCCTAGAGCTTTCCATGTGAG
TTTTCAACAATTGAAGAACAACAAGAATCAATAAGAAAGATCAAGAAAGCC
Found at i:862790 original size:17 final size:17
Alignment explanation
Indices: 862754--862787 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
862744 AATGTTCATC
*
862754 TTACTTTTTTTTACTAA
1 TTACTTTTTTTTAATAA
862771 TTACTTTTATTTTAATA
1 TTACTTTT-TTTTAATA
862788 TTAAAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (17 bp):
TTACTTTTTTTTAATAA
Found at i:863565 original size:41 final size:41
Alignment explanation
Indices: 863484--863593 Score: 126
Period size: 41 Copynumber: 2.8 Consensus size: 41
863474 GAAAAGAAAG
* *
863484 TTAAGATATAATATAAA-ATGAC-ATAATATAAGAAAGTAATA
1 TTAAAATATAATATAAATAT-ACTATAATATAA-AAAATAATA
863525 TTAAAATATAATATAAATATACTATAATATAAAAAATAATA
1 TTAAAATATAATATAAATATACTATAATATAAAAAATAATA
*
863566 TTAACATAT--TA-AAAT-TA-TATAATATAAA
1 TTAAAATATAATATAAATATACTATAATATAAA
863594 TTATTAATGT
Statistics
Matches: 64, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
36 11 0.17
37 2 0.03
38 4 0.06
39 2 0.03
41 34 0.53
42 11 0.17
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.34
Consensus pattern (41 bp):
TTAAAATATAATATAAATATACTATAATATAAAAAATAATA
Found at i:863657 original size:18 final size:19
Alignment explanation
Indices: 863609--863676 Score: 67
Period size: 18 Copynumber: 3.8 Consensus size: 19
863599 AATGTTTCAA
863609 ATATATATAAATATGAA-AT
1 ATATATATAAATAT-AATAT
*
863628 ATCTA-A-AAATATAAGTAT
1 ATATATATAAATATAA-TAT
863646 A-ATAT-TAAATAT-ATAT
1 ATATATATAAATATAATAT
863662 ATATATATAAATATA
1 ATATATATAAATATA
863677 TAAAATACAC
Statistics
Matches: 40, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
16 6 0.15
17 13 0.32
18 17 0.43
19 4 0.10
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.38
Consensus pattern (19 bp):
ATATATATAAATATAATAT
Found at i:863679 original size:8 final size:8
Alignment explanation
Indices: 863611--863680 Score: 52
Period size: 8 Copynumber: 8.1 Consensus size: 8
863601 TGTTTCAAAT
863611 ATATATAA
1 ATATATAA
*
863619 ATAT-GAA
1 ATATATAA
*
863626 ATATCTAA
1 ATATATAA
*
863634 AAATATAA
1 ATATATAA
863642 GTATAATATTAA
1 --AT-ATA-TAA
863654 ATATATATA
1 ATATATA-A
863663 TATATATAA
1 -ATATATAA
863672 ATATATAA
1 ATATATAA
863680 A
1 A
863681 ATACACATAT
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
7 6 0.12
8 23 0.46
9 5 0.10
10 10 0.20
11 3 0.06
12 3 0.06
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (8 bp):
ATATATAA
Found at i:864333 original size:10 final size:10
Alignment explanation
Indices: 864296--864336 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
864286 TAACACTTTT
864296 ATATTTTATA
1 ATATTTTATA
*
864306 ATGTTATTAT-
1 ATATT-TTATA
864316 AT-TTTTATA
1 ATATTTTATA
864325 ATATTTTATA
1 ATATTTTATA
864335 AT
1 AT
864337 TTTATTTTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
8 4 0.15
9 4 0.15
10 15 0.56
11 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (10 bp):
ATATTTTATA
Found at i:864901 original size:19 final size:19
Alignment explanation
Indices: 864877--864917 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
864867 CAAACCTTTG
864877 TTTATGCTCGTTTGTTTAT
1 TTTATGCTCGTTTGTTTAT
864896 TTTATGCTCGTTTGTTTAT
1 TTTATGCTCGTTTGTTTAT
864915 TTT
1 TTT
864918 TAAGTTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.10, C:0.10, G:0.15, T:0.66
Consensus pattern (19 bp):
TTTATGCTCGTTTGTTTAT
Found at i:865276 original size:23 final size:22
Alignment explanation
Indices: 865250--865305 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
865240 AAAAAAATTT
865250 TAAAAGAGTTTTAAATGATTGA
1 TAAAAGAGTTTTAAATGATTGA
* * * *
865272 CTAAACGAGCTCTAAATGATTTA
1 -TAAAAGAGTTTTAAATGATTGA
*
865295 TAAATGAGTTT
1 TAAAAGAGTTT
865306 ATTCGTGAAC
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
22 8 0.31
23 18 0.69
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (22 bp):
TAAAAGAGTTTTAAATGATTGA
Found at i:866591 original size:33 final size:33
Alignment explanation
Indices: 866535--866599 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
866525 TACAAGCCAA
* *
866535 TGTATCGATACAATTTTTTGTGTATCCATACAT
1 TGTATCGATACAATCTTTGGTGTATCCATACAT
*
866568 TGTATCGATAC-ATACTTTGGTGTATCGATACA
1 TGTATCGATACAAT-CTTTGGTGTATCCATACA
866600 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 26 0.93
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATCTTTGGTGTATCCATACAT
Found at i:867299 original size:39 final size:39
Alignment explanation
Indices: 867214--867309 Score: 97
Period size: 39 Copynumber: 2.4 Consensus size: 39
867204 TTTTCTTTTC
*
867214 TTTCTCCCTTAATTAAAGTAATTTTAACAAATTCGTACAT
1 TTTCCCCCTTAATTAAAGTAATTTTAACAAATTCG-ACAT
* * *
867254 TCTCCCCCTTAA-TAAGGTAATTTTAGCAAATTTACG-CAT
1 TTTCCCCCTTAATTAAAGTAATTTTAACAAA-TT-CGACAT
* *
867293 TTTCCCCTTTTATTAAA
1 TTTCCCCCTTAATTAAA
867310 AAAATCTCCC
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
39 28 0.62
40 15 0.33
41 2 0.04
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (39 bp):
TTTCCCCCTTAATTAAAGTAATTTTAACAAATTCGACAT
Found at i:869161 original size:13 final size:13
Alignment explanation
Indices: 869143--869181 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
869133 ATAATCCCCC
*
869143 TGTATCGATACAG
1 TGTATCGATACAA
869156 TGTATCGATACAA
1 TGTATCGATACAA
869169 TGTATCGATACAA
1 TGTATCGATACAA
869182 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:874261 original size:33 final size:33
Alignment explanation
Indices: 874205--874269 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
874195 TACAAGCCAA
* *
874205 TGTATCGATACAATTTTTTGTGTATCCATACAT
1 TGTATCGATACAATCTTTGGTGTATCCATACAT
*
874238 TGTATCGATAC-ATACTTTGGTGTATCGATACA
1 TGTATCGATACAAT-CTTTGGTGTATCCATACA
874270 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 26 0.93
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATCTTTGGTGTATCCATACAT
Found at i:876259 original size:58 final size:58
Alignment explanation
Indices: 876189--876300 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 58
876179 AAATAATTAG
* * * *
876189 CTAAATGATCCCTAGATGATGGAAAACAGCTTAAATTACCCTAAAATGCATGAACATA
1 CTAAATGATCCCTAGATGATGAAAAACAACTTAAATGACCCTAAAATACATGAACATA
* * * * *
876247 CTAAATGGTCCCTAGATTATGAAAAATAACTTAAGTGATCCTAAAATACATGAA
1 CTAAATGATCCCTAGATGATGAAAAACAACTTAAATGACCCTAAAATACATGAA
876301 ACTAAATATT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
58 45 1.00
ACGTcount: A:0.44, C:0.17, G:0.13, T:0.26
Consensus pattern (58 bp):
CTAAATGATCCCTAGATGATGAAAAACAACTTAAATGACCCTAAAATACATGAACATA
Found at i:876972 original size:26 final size:25
Alignment explanation
Indices: 876943--877005 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 25
876933 ATGAGTTATC
* *
876943 TTTTTT-CTTTATTTTTTATTTTTCT
1 TTTTTTGCTTT-TCTTTTACTTTTCT
*
876968 GTTTTTTGCTTTTCTTTTGCTTTTCT
1 -TTTTTTGCTTTTCTTTTACTTTTCT
876994 TTTTTTGCTTTT
1 TTTTTTGCTTTT
877006 GGTTTCTTGC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 12 0.36
26 17 0.52
27 4 0.12
ACGTcount: A:0.03, C:0.11, G:0.06, T:0.79
Consensus pattern (25 bp):
TTTTTTGCTTTTCTTTTACTTTTCT
Found at i:876987 original size:11 final size:11
Alignment explanation
Indices: 876971--876996 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
876961 TTTTTCTGTT
876971 TTTTGCTTTTC
1 TTTTGCTTTTC
876982 TTTTGCTTTTC
1 TTTTGCTTTTC
876993 TTTT
1 TTTT
876997 TTTGCTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.15, G:0.08, T:0.77
Consensus pattern (11 bp):
TTTTGCTTTTC
Found at i:878740 original size:165 final size:165
Alignment explanation
Indices: 878505--879056 Score: 675
Period size: 165 Copynumber: 3.3 Consensus size: 165
878495 TATAAATGTT
* * * * * *
878505 GAAAGATTCAGCCAAGTAACTTTGGCCTAAGAACAAATTTTCTAGTATTGACAAATAAACCCCTA
1 GAAAGATTCAGCCAAGTAACTTTGGCCTTAGAACAAAATTTCTAATATTTAC-AATTAACCCTTA
* *
878570 AATTTTCTAAAATTATAAATTAGCTTTTATATAATTAAAATACAAAATTAAACATCAAACATATT
65 AATTTTCTAAAATTACAAATTAGCTTTTATATAATTAAAACACAAAATTAAACATCAAACATATT
878635 AAAATCAGTACCAAAAATCACATAC-AAAGTCACAA
130 AAAATCAGTACCAAAAATCACATACAAAAGTCACAA
* *
878670 GAAAGATTCAACCAAGTAACTTTGGCCTTAGAATAAAATTTCTAATATTTACAATTAATCCCTTA
1 GAAAGATTCAGCCAAGTAACTTTGGCCTTAGAACAAAATTTCTAATATTTACAATTAA-CCCTTA
* * * *
878735 AATTTT-TAAAATTACAAATTTATCCTTT-TATAATTAAAACACAAAATCAAACATTAAACATAT
65 AATTTTCTAAAATTACAAA-TTAGCTTTTATATAATTAAAACACAAAATTAAACATCAAACATAT
*
878798 TAAAATCAATACCAAAAATCACATACAAAAGTCACAA
129 TAAAATCAGTACCAAAAATCACATACAAAAGTCACAA
* * * * * *
878835 GAAAGATTTAGTCAAGTAACTTTGGCCTTGGAAAAAAATTTCTAATATTTATATTTAGACCCTTA
1 GAAAGATTCAGCCAAGTAACTTTGGCCTTAGAACAAAATTTCTAATATTTACAATTA-ACCCTTA
* * * *
878900 AACTTTCTAAAATTACAAATT-GGTCCTTATATAATTAAAACACAAAATTAAACATCAAATATAT
65 AATTTTCTAAAATTACAAATTAGCT-TTTATATAATTAAAACACAAAATTAAACATCAAACATAT
** ** * * *
878964 CCAAATCAGCGCTAAAAATCTCGTACAAAAGTCACAA
129 TAAAATCAGTACCAAAAATCACATACAAAAGTCACAA
* * * *
879001 GAAAGACTT-GGCCAAGTAACTTTGGTCTTGGAACAAAATTT-TCAATAATTACAATT
1 GAAAGA-TTCAGCCAAGTAACTTTGGCCTTAGAACAAAATTTCT-AATATTTACAATT
879057 TAGTCCTTAT
Statistics
Matches: 333, Mismatches: 45, Indels: 17
0.84 0.11 0.04
Matches are distributed among these distances:
164 73 0.22
165 140 0.42
166 118 0.35
167 2 0.01
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (165 bp):
GAAAGATTCAGCCAAGTAACTTTGGCCTTAGAACAAAATTTCTAATATTTACAATTAACCCTTAA
ATTTTCTAAAATTACAAATTAGCTTTTATATAATTAAAACACAAAATTAAACATCAAACATATTA
AAATCAGTACCAAAAATCACATACAAAAGTCACAA
Found at i:880346 original size:49 final size:49
Alignment explanation
Indices: 880274--880370 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
880264 CTGTACTGTG
880274 GATTGGAATTTTTCAAAATTGATTTCACAGTGATTTAAGGAGAATATTA
1 GATTGGAATTTTTCAAAATTGATTTCACAGTGATTTAAGGAGAATATTA
***
880323 GATTGGAATTTTTCAAAATTGATTTCTTGGTGATTTAAGGAGAATATT
1 GATTGGAATTTTTCAAAATTGATTTCACAGTGATTTAAGGAGAATATT
880371 TAAAGAATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.34, C:0.05, G:0.20, T:0.41
Consensus pattern (49 bp):
GATTGGAATTTTTCAAAATTGATTTCACAGTGATTTAAGGAGAATATTA
Found at i:881233 original size:21 final size:22
Alignment explanation
Indices: 881198--881238 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
881188 TAAACTCTTA
881198 AAGGCCAAGGTATCGATACACC
1 AAGGCCAAGGTATCGATACACC
*
881220 AAGGCC-ATGTATCGATACA
1 AAGGCCAAGGTATCGATACA
881239 TCCATGTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (22 bp):
AAGGCCAAGGTATCGATACACC
Found at i:884107 original size:79 final size:79
Alignment explanation
Indices: 883925--884111 Score: 207
Period size: 79 Copynumber: 2.4 Consensus size: 79
883915 TCATTAATGT
* * * * **
883925 TTTTATTTCTAAAATA-TCGATTTTCTACCATTGGGGATACTCCAACCCCGTTATTTCCGAGGGG
1 TTTTATTTCTAAAATACT-GATTTTCCACTATTGGAGATACTCCAACCCCATTATTTCCGAGAAG
*
883989 ATACTCCAACTTTGA
65 ATACTCCAACTTCGA
* * * * ** *
884004 TTTTATTCCT-AAACACTAATTTTTCCACTATTGGAGATACTCTAACCTTATTATTTCTGAGAAG
1 TTTTATTTCTAAAATACTGA-TTTTCCACTATTGGAGATACTCCAACCCCATTATTTCCGAGAAG
*
884068 ATACTGCAACTTCGA
65 ATACTCCAACTTCGA
884083 TTTTATTTCTAAAATACTGATTTTCCACT
1 TTTTATTTCTAAAATACTGATTTTCCACT
884112 GTAGACACCA
Statistics
Matches: 87, Mismatches: 18, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
78 5 0.06
79 75 0.86
80 7 0.08
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (79 bp):
TTTTATTTCTAAAATACTGATTTTCCACTATTGGAGATACTCCAACCCCATTATTTCCGAGAAGA
TACTCCAACTTCGA
Found at i:884673 original size:51 final size:51
Alignment explanation
Indices: 884597--884695 Score: 180
Period size: 51 Copynumber: 1.9 Consensus size: 51
884587 AAAAGTCACA
* *
884597 TTTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACATTCTGTC
1 TTTTTACCCAGATATATCGATACATTTTTCAATGTATCGATACATTCTGTC
884648 TTTTTACCCAGATATATCGATACATTTTTCAATGTATCGATACATTCT
1 TTTTTACCCAGATATATCGATACATTTTTCAATGTATCGATACATTCT
884696 TCAATGTATC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.27, C:0.18, G:0.10, T:0.44
Consensus pattern (51 bp):
TTTTTACCCAGATATATCGATACATTTTTCAATGTATCGATACATTCTGTC
Found at i:884687 original size:20 final size:20
Alignment explanation
Indices: 884662--884748 Score: 129
Period size: 20 Copynumber: 4.2 Consensus size: 20
884652 TACCCAGATA
*
884662 TATCGATACATTTTTCAATG
1 TATCGATACATTCTTCAATG
884682 TATCGATACATTCTTCAATG
1 TATCGATACATTCTTCAATG
884702 TATCGATACATTCTATCGAGATG
1 TATCGATACATTCT-TC-A-ATG
*
884725 TATCGATACCTTCTTCAATG
1 TATCGATACATTCTTCAATG
884745 TATC
1 TATC
884749 AATATACTAG
Statistics
Matches: 62, Mismatches: 2, Indels: 6
0.89 0.03 0.09
Matches are distributed among these distances:
20 40 0.65
21 3 0.05
22 3 0.05
23 16 0.26
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (20 bp):
TATCGATACATTCTTCAATG
Found at i:884733 original size:43 final size:40
Alignment explanation
Indices: 884662--884748 Score: 129
Period size: 43 Copynumber: 2.1 Consensus size: 40
884652 TACCCAGATA
*
884662 TATCGATACATTTTTCAATGTATCGATACATTCTTCAATG
1 TATCGATACATTTATCAATGTATCGATACATTCTTCAATG
*
884702 TATCGATACATTCTATCGAGATGTATCGATACCTTCTTCAATG
1 TATCGATACATT-TATC-A-ATGTATCGATACATTCTTCAATG
884745 TATC
1 TATC
884749 AATATACTAG
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
40 12 0.29
41 3 0.07
42 1 0.02
43 26 0.62
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (40 bp):
TATCGATACATTTATCAATGTATCGATACATTCTTCAATG
Found at i:886891 original size:158 final size:156
Alignment explanation
Indices: 886635--887103 Score: 545
Period size: 158 Copynumber: 3.0 Consensus size: 156
886625 AACGGGGTTG
* * * * *
886635 GAGTATCTCCTCGAAAATAACGGGGTTGGAGTATCCTCGATTGTAAAAAATCGATGA-TTTAGAA
1 GAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGAT-ATTTTAGAA
* *
886699 ATAAAATCGGGATTGGAGTATCCCTTCAAAAATAATGGGGTTGGAGTATCCCCGACTATGAAAAA
65 ATAAAATCGGG-TTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGA-TATGAAAAA
*
886764 TTGATGTTTTAGAAATAAAATCGGAGTTA
128 TTGATGTTTTAGAAATAAAATCAGAGTTA
* * * *
886793 GAGTATCCCCTAGGAAATAATGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAA
1 GAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAA
* *
886858 TAAAATCAGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGATATGAGAAATT
66 TAAAATC-GGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATATGAAAAATT
* * * * *
886923 AATATTTTAGAAAT-AAAGCCGAGGTTG
130 GATGTTTTAGAAATAAAATCAGA-GTTA
* * * * *
886950 GGGTATCCACTCGAAAATAACGGGGTTGGAGTAT-CCC--TGATGAAAAATTGATGTTTTAAAAA
1 GAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAA
* * * *
887012 TAAAACCGGGGTTGGAGTGTCCCCTCAGAAATAACAGGGTTGGAGTATCCCCGAT-TGTAAAAAG
66 TAAAATC-GGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATATG-AAAAA-
* * *
887076 TCGGTGTTTTGGAAATAAAATCAGAGTT
128 TTGATGTTTTAGAAATAAAATCAGAGTT
887104 GTGGTATCCT
Statistics
Matches: 264, Mismatches: 41, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
153 2 0.01
154 74 0.28
155 14 0.05
156 15 0.06
157 55 0.21
158 101 0.38
159 3 0.01
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (156 bp):
GAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAA
TAAAATCGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATATGAAAAATTG
ATGTTTTAGAAATAAAATCAGAGTTA
Found at i:886950 original size:78 final size:77
Alignment explanation
Indices: 886629--887097 Score: 493
Period size: 79 Copynumber: 6.0 Consensus size: 77
886619 GATAATAACG
* * *
886629 GGGTTGGAGTATCTCCTCGAAAATAACGGGGTTGGAGTAT-CCTCGAT-TGTAAAAAATCGATGA
1 GGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCT-GATATG--AAAAATTGAT-A
886692 -TTTAGAAATAAAATC
62 TTTTAGAAATAAAATC
* * * *
886707 GGGATTGGAGTATCCCTTCAAAAATAATGGGGTTGGAGTATCCCCGACTATGAAAAATTGATGTT
1 GGG-TTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGA-TATGAAAAATTGATATT
886772 TTAGAAATAAAATC
64 TTAGAAATAAAATC
* * * * *
886786 GGAGTTAGAGTATCCCCT-AGGAAATAATGGGGTTGGAGTATCCCCGATTATGAAAAATTAATAT
1 GG-GTTGGAGTATCCCCTCA-AAAATAACGGGGTTGGAGTATCCCTGA-TATGAAAAATTGATAT
886850 TTTAGAAATAAAATC
63 TTTAGAAATAAAATC
* *
886865 AGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGATATGAGAAATTAATATTT
1 -GGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGATATGAAAAATTGATATTT
**
886930 TAGAAATAAAGCC
65 TAGAAATAAAATC
* * * *
886943 GAGGTTGGGGTATCCACTCGAAAATAACGGGGTTGGAGTATCCCTG--ATGAAAAATTGATGTTT
1 G-GGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGATATGAAAAATTGATATTT
* *
887006 TAAAAATAAAACC
65 TAGAAATAAAATC
* * * * * * *
887019 GGGGTTGGAGTGTCCCCTCAGAAATAACAGGGTTGGAGTATCCCCGAT-TGTAAAAAGTCGGTGT
1 -GGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGATATG-AAAAA-TTGATAT
*
887083 TTTGGAAATAAAATC
63 TTTAGAAATAAAATC
887098 AGAGTTGTGG
Statistics
Matches: 336, Mismatches: 40, Indels: 29
0.83 0.10 0.07
Matches are distributed among these distances:
76 62 0.18
77 4 0.01
78 78 0.23
79 183 0.54
80 7 0.02
81 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (77 bp):
GGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCTGATATGAAAAATTGATATTTT
AGAAATAAAATC
Found at i:887118 original size:51 final size:51
Alignment explanation
Indices: 887054--887193 Score: 140
Period size: 51 Copynumber: 2.7 Consensus size: 51
887044 AACAGGGTTG
* *
887054 GAGTATCCCCGATTGT-AAAAAGTCGGTGTTTTGGAAATAAAATCAGAGTT-
1 GAGTATCCTCGATTGTGAAAAA-TCGGTGTTTTAGAAATAAAATCAGAGTTA
* * * * *
887104 GTGGTATCCTCGATTTTGGAAAATGGGTGTTTTAGAAATAAAATCGGAGTTA
1 G-AGTATCCTCGATTGTGAAAAATCGGTGTTTTAGAAATAAAATCAGAGTTA
** * * *
887156 GAGTATCCTCGATTAAGAAAAATTGATGTTTTGGAAAT
1 GAGTATCCTCGATTGTGAAAAATCGGTGTTTTAGAAAT
887194 GAAACCGGGA
Statistics
Matches: 73, Mismatches: 14, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
50 1 0.01
51 67 0.92
52 5 0.07
ACGTcount: A:0.34, C:0.09, G:0.24, T:0.33
Consensus pattern (51 bp):
GAGTATCCTCGATTGTGAAAAATCGGTGTTTTAGAAATAAAATCAGAGTTA
Found at i:887211 original size:51 final size:51
Alignment explanation
Indices: 887080--887214 Score: 121
Period size: 51 Copynumber: 2.6 Consensus size: 51
887070 AAAAAGTCGG
* * * * ** * *
887080 TGTTTTGGAAATAAAATCAGAGTT-GTGGTATCCTCGATTTTGGAAAATGGG
1 TGTTTTAGAAATAAAACCGGAGTTAG-AGTATCCTCGATTAAGAAAAATGGA
* *
887131 TGTTTTAGAAATAAAATCGGAGTTAGAGTATCCTCGATTAAGAAAAATTGA
1 TGTTTTAGAAATAAAACCGGAGTTAGAGTATCCTCGATTAAGAAAAATGGA
* * *
887182 TGTTTTGGAAATGAAACCGG-GATTGGAGTATCC
1 TGTTTTAGAAATAAAACCGGAG-TTAGAGTATCC
887215 CCGAGATGAA
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
50 1 0.01
51 68 0.97
52 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.25, T:0.33
Consensus pattern (51 bp):
TGTTTTAGAAATAAAACCGGAGTTAGAGTATCCTCGATTAAGAAAAATGGA
Found at i:889482 original size:20 final size:19
Alignment explanation
Indices: 889457--889572 Score: 153
Period size: 20 Copynumber: 5.8 Consensus size: 19
889447 AAAAATGCCT
*
889457 AAATGTATCGATACATTGTA
1 AAATGTATCGATACAATG-A
889477 AAATGTATCGATACAAT-A
1 AAATGTATCGATACAATGA
889495 AGCAATGTATCGATACAATGA
1 A--AATGTATCGATACAATGA
*
889516 GCAATGTATCGATACAATGCA
1 -AAATGTATCGATACAATG-A
889537 AAATGTATCGATACAATGA
1 AAATGTATCGATACAATGA
889556 ACAATGTATCGATACAA
1 A-AATGTATCGATACAA
889573 ATTGTGAAAA
Statistics
Matches: 87, Mismatches: 3, Indels: 12
0.85 0.03 0.12
Matches are distributed among these distances:
18 2 0.02
19 2 0.02
20 81 0.93
21 2 0.02
ACGTcount: A:0.44, C:0.14, G:0.16, T:0.27
Consensus pattern (19 bp):
AAATGTATCGATACAATGA
Found at i:889530 original size:60 final size:60
Alignment explanation
Indices: 889458--889572 Score: 196
Period size: 60 Copynumber: 1.9 Consensus size: 60
889448 AAAATGCCTA
* *
889458 AATGTATCGATACATTGTAAAATGTATCGATACAAT-AAGCAATGTATCGATACAATGAGC
1 AATGTATCGATACAATGCAAAATGTATCGATACAATGAA-CAATGTATCGATACAATGAGC
889518 AATGTATCGATACAATGCAAAATGTATCGATACAATGAACAATGTATCGATACAA
1 AATGTATCGATACAATGCAAAATGTATCGATACAATGAACAATGTATCGATACAA
889573 ATTGTGAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
60 50 0.96
61 2 0.04
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (60 bp):
AATGTATCGATACAATGCAAAATGTATCGATACAATGAACAATGTATCGATACAATGAGC
Found at i:890329 original size:61 final size:59
Alignment explanation
Indices: 890227--890524 Score: 314
Period size: 61 Copynumber: 5.1 Consensus size: 59
890217 AACAAAGGAG
**
890227 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTATAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAA-GAAAAGGCATCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT
* *
890288 GAAAAGAAAAGGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
1 -AAAAGAAAAGGCATCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTT
* * *
890349 AAAAGGAGAAGGCATCCTGCTCTTTGAGGACTGGGAATTGCCACCAACTTGTGCGGGCTTT
1 AAAA-GAAAAGGCATCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT
*
890410 AAAAG----GTG--TCCTGCTCTTTGAGGATTGGGAAGTGCC-CCTAACTTGTGTGGGCTTT
1 AAAAGAAAAG-GCATCCTGCTCTTTGAGGACT-GGAAGTGCCACC-AACTTGTGTGGGCTTT
* * * *
890465 -----AAAAGGCATCTTGCTCTTTGAGGACGGGAAAATGCCACTAACTTGTGTGGGCTTT
1 AAAAGAAAAGGCATCCTGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTT
890520 AAAAG
1 AAAAG
890525 GTGTCCTACT
Statistics
Matches: 201, Mismatches: 17, Indels: 38
0.79 0.07 0.15
Matches are distributed among these distances:
53 1 0.00
54 5 0.02
55 78 0.39
56 2 0.01
57 1 0.00
60 7 0.03
61 99 0.49
62 8 0.04
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (59 bp):
AAAAGAAAAGGCATCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:890453 original size:55 final size:55
Alignment explanation
Indices: 890233--891366 Score: 530
Period size: 55 Copynumber: 20.5 Consensus size: 55
890223 GGAGAAAAGG
* ***
890233 AAAAGGCATCCTGCTCTTTGAGGACTATAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
*
890288 GAAAAGAAAAGGCGTCCTACTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTT
1 ------AAAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT
* * *
890349 AAAAGGAGAAGGCATCCTGCTCTTTGAGGACTGGGAATTGCCACCAACTTGTGCGGGCTTT
1 ---A--A-AAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
* *
890410 AAAAGGTGTCCTGCTCTTTGAGGATTGGGAAGTGCC-CCTAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACC-AACTTGTGTGGGCTTT
* * * *
890465 AAAAGGCATCTTGCTCTTTGAGGAC-GGGAAAATGCCACTAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGG-AAGTGCCACCAACTTGTGTGGGCTTT
* * ** * * * * * *
890520 AAAAGGTGTCCTACTCTTTGAGGACT-AAAAG-GCGA--AA--AGAGAGAGC-GT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
*** * ***** * ** * * **** * *****
890568 --CCTGC-TCTTTGAGGACTG-GGA-AGTGCCA--CCAACTTGTGTTG-GCTTTGAAAGG
1 AAAAGGCGTC-CTGCTCTTTGAGGACTG-GGAAGTGCCAC-CAACTTGTG--TGGGCTTT
* * * * *
890620 AGAAA-GCATCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTT
1 A-AAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
* * * * *
890675 GAAAGGCGTCCTACTCTTTGAGGACTGGAAAATGCCACCAATTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
* * ** *
890730 AACAGAAAAGGCGTCCTGCTTTTTAAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT
1 -----AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
*
890790 GAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
1 -AAAAG-----GCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
*
890851 AAAAGGCGTCCTGCTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
890906 AAAAGGCGTCCTGCTCTTTAAGGACTGGAAAATGCCACCAACTTCTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
* ** ** * * * * **
890961 AAAAGGCGTCCTGCTCTTTAAGGACTAAAGGGCGAAAAGAGA-GAGCGTCT-TGCTCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACT----GG-GAAGTGCCACCAACTTGTGTGGGCTTT
** *** *** * * ** **
891019 GAGGACTGG-GAAGTGC-C-ACCA--ACT-TG-TGTG-----GGCTT-TGAAAGG----
1 -A--AAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTG-TGGGCTTT
* * * * *
891061 AGAAA-GCATCCTGTTCTTTGAGGACTGGAAAATGCCACTAACTTGTGTGGGCTTT
1 A-AAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
* ** * *
891116 AAAAAGG-GTCCTACTCTTTGAGGACTGAAAAATGCCACCAATTTGTGTGGGCTTT
1 -AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
*
891171 AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT
1 -----AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
* * *
891231 AAAAGGTGTCCTGCTCTTTGAGGATTGGGAAGTGCCCCCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
891286 AAAAGGCGTCTTGCTCTTTGAGGACCGGAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
* *
891341 AAAAGGTGTTCTGCTCTTTGAGGACT
1 AAAAGGCGTCCTGCTCTTTGAGGACT
891367 AAAAGGCGAA
Statistics
Matches: 819, Mismatches: 180, Indels: 154
0.71 0.16 0.13
Matches are distributed among these distances:
39 1 0.00
40 4 0.00
41 2 0.00
42 1 0.00
44 4 0.00
45 10 0.01
46 7 0.01
48 1 0.00
49 7 0.01
50 2 0.00
51 7 0.01
52 3 0.00
53 3 0.00
54 17 0.02
55 453 0.55
56 16 0.02
57 4 0.00
58 11 0.01
59 15 0.02
60 108 0.13
61 139 0.17
62 4 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (55 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:890693 original size:155 final size:149
Alignment explanation
Indices: 890417--890700 Score: 435
Period size: 155 Copynumber: 1.9 Consensus size: 149
890407 TTTAAAAGGT
*
890417 GTCCTGCTCTTTGAGGATTGGGAAGTGCCCCTAACTTGTGTGGGCTTTAAAAGGCATCTTGCTCT
1 GTCCTGCTCTTTGAGGACTGGGAAGTGCCCCTAACTTGTGTGGGCTTTAAAAGGCATCTTGCTCT
* * *
890482 TTGAGGACGGGAAAATGCCACTAACTTGTGTGGGCTTTAAAAGGTGTCCTACTCTTTGAGGACTA
66 TTGAGGACGGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTA
890547 AAAGGCGAAAAGAGAGAGC
131 AAAGGCGAAAAGAGAGAGC
*
890566 GTCCTGCTCTTTGAGGACTGGGAAGTGCCACC-AACTTGTGTTGGCTTTGAAAGGAGAAAGCATC
1 GTCCTGCTCTTTGAGGACTGGGAAGTGCC-CCTAACTTGTGTGGGCTTT-AAA--AG---GCATC
* *
890630 TTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGGCGTCCTACTCTTTG
59 TTGCTCTTTGAGGACGGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCGTCCTACTCTTTG
890695 AGGACT
124 AGGACT
890701 GGAAAATGCC
Statistics
Matches: 121, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
149 43 0.36
150 5 0.04
152 2 0.02
155 71 0.59
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (149 bp):
GTCCTGCTCTTTGAGGACTGGGAAGTGCCCCTAACTTGTGTGGGCTTTAAAAGGCATCTTGCTCT
TTGAGGACGGGAAAATGCCACCAACTTATGTGGGCTTTAAAAGGCGTCCTACTCTTTGAGGACTA
AAAGGCGAAAAGAGAGAGC
Done.