Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold511
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1668812
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 3 of 12
Found at i:254209 original size:52 final size:52
Alignment explanation
Indices: 254129--254255 Score: 227
Period size: 52 Copynumber: 2.4 Consensus size: 52
254119 CGAAATATGA
* *
254129 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATAAATTTCATAGTGTATCAATACATCTGGGC
*
254181 AAATTTGCCTGTATGTATCGATAAATTTCATAGTGTATCAATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATAAATTTCATAGTGTATCAATACATCTGGGC
254233 AAATTTGCCTGCATGTATCGATA
1 AAATTTGCCTGCATGTATCGATA
254256 CAAAGATCAG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATAAATTTCATAGTGTATCAATACATCTGGGC
Found at i:254268 original size:52 final size:52
Alignment explanation
Indices: 254129--254271 Score: 184
Period size: 52 Copynumber: 2.8 Consensus size: 52
254119 CGAAATATGA
** *
254129 AAATTTGCCTGCATGTATCGATACATTTCAT-AGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-AACATCAGTGTATCAATACATCTGGGC
* *
254181 AAATTTGCCTGTATGTATCGATA-AATTTCAT-AGTGTATCAATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACAA--ACATCAGTGTATCAATACATCTGGGC
*
254233 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATC
1 AAATTTGCCTGCATGTATCGATACAAACATCAGTGTATC
254272 GGTACAATGT
Statistics
Matches: 81, Mismatches: 6, Indels: 8
0.85 0.06 0.08
Matches are distributed among these distances:
51 3 0.04
52 76 0.94
53 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACAAACATCAGTGTATCAATACATCTGGGC
Found at i:257313 original size:17 final size:17
Alignment explanation
Indices: 257293--257347 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 17
257283 TTTTATAATG
257293 ATTAGATAAT-TATATTT
1 ATTAGATAATAT-TATTT
257310 ATTAGATGAATATTATTT
1 ATTAGAT-AATATTATTT
257328 ATTGAGATAAATATTGATTT
1 ATT-AGAT-AATATT-ATTT
257348 TAAATTATAG
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
17 7 0.21
18 11 0.33
19 11 0.33
20 4 0.12
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (17 bp):
ATTAGATAATATTATTT
Found at i:257340 original size:19 final size:18
Alignment explanation
Indices: 257293--257347 Score: 67
Period size: 17 Copynumber: 3.0 Consensus size: 18
257283 TTTTATAATG
*
257293 ATTAGATAATTA-TATTT
1 ATTAGATAAATATTATTT
*
257310 ATTAGATGAATATTATTT
1 ATTAGATAAATATTATTT
257328 ATTGAGATAAATATTGATTT
1 ATT-AGATAAATATT-ATTT
257348 TAAATTATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 10 0.31
18 8 0.25
19 10 0.31
20 4 0.12
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (18 bp):
ATTAGATAAATATTATTT
Found at i:262063 original size:79 final size:79
Alignment explanation
Indices: 261847--262129 Score: 243
Period size: 79 Copynumber: 3.5 Consensus size: 79
261837 CAACCCTCGT
* * * * *
261847 TTTTACTTCTAAAACACCAAAATTTTCATCTC-GAGGGA-ACTCCAACCCCACCATCTCTGAGGG
1 TTTTACTTCTAAAACATCAAATTTTTCACCTCTG-GGGATACTCCAACCTCACCATCTCCGA---
* * *
261910 GATGGGATCCTCCAA-TCCCG
62 -A-GAGATACTCCAACT-CCA
** * * * *
261930 TTTTACTTCTAAAACA-CTAAATTTTTCATTTCTAGGGATGCTCCAATCTTACCATCTCCGAAGA
1 TTTTACTTCTAAAACATC-AAATTTTTCACCTCTGGGGATACTCCAACCTCACCATCTCCGAAGA
261994 GATACTCCAACTCCA
65 GATACTCCAACTCCA
** * * * *
262009 TTTCTACTTCTAAAATGTCAAATTTTTTATCT-TGGGGATACTCCAACCTCACCATCTCTGAAGG
1 TTT-TACTTCTAAAACATCAAATTTTTCACCTCTGGGGATACTCCAACCTCACCATCTCCGAAGA
***
262073 GATACTCCAACTTTG
65 GATACTCCAACTCCA
262088 TTTTACTTCTAAAACATCAAATTTTTCACCTCTGGGGATACT
1 TTTTACTTCTAAAACATCAAATTTTTCACCTCTGGGGATACT
262130 TGTCGTAATG
Statistics
Matches: 165, Mismatches: 28, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
78 24 0.15
79 66 0.40
80 24 0.15
81 1 0.01
82 1 0.01
83 32 0.19
84 17 0.10
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (79 bp):
TTTTACTTCTAAAACATCAAATTTTTCACCTCTGGGGATACTCCAACCTCACCATCTCCGAAGAG
ATACTCCAACTCCA
Found at i:267639 original size:20 final size:20
Alignment explanation
Indices: 267610--267687 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
267600 TAAAAAAAAT
* *
267610 AGAATTTATCAATACAATGA
1 AGAATGTATCAATACATTGA
* * *
267630 AGAATGTATCGATGCATTCA
1 AGAATGTATCAATACATTGA
*
267650 A-ACATGTATCGATACATTGA
1 AGA-ATGTATCAATACATTGA
*
267670 AAAATGTATCAATACATT
1 AGAATGTATCAATACATT
267688 TGGGTAAAAG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (20 bp):
AGAATGTATCAATACATTGA
Found at i:268794 original size:156 final size:154
Alignment explanation
Indices: 268217--268788 Score: 524
Period size: 156 Copynumber: 3.7 Consensus size: 154
268207 GCAACGTGTC
* * * * *
268217 CCGACGATGACGTAGCAGTTGGTTCT-AGAAAATTACGAAAATTCTCCTAAGGGATACCTTCAAC
1 CCGACGATGACGTAGGAGTTGGTT-TAAAAAAATTACGAAAATGCCCCTAAGGGATACCTTCGAC
* * * *
268281 GTCAAAGTACTCGATACCCCTAAAGGACTTAAAAAGGATTTTAAAAGGGATGAACCTATCCTAAA
65 GTAAAAGTGCTCGATACCCCTAAAAGACTTAAAAAGGATTATAAAAGGGATGAACCTATCCTAAA
*
268346 TATCTACCTTCGGCATAAAAGAGGA
130 TATCTACCTTTGGCATAAAAGAGGA
* * * * * * * *
268371 CCCGATGACGACATAGGAGTTAGTTTTAAAAAATTACAAAAAATACCCCTAAGGGATACCTTTGA
1 -CCGACGATGACGTAGGAGTTGGTTTAAAAAAATTAC-GAAAATGCCCCTAAGGGATACCTTCGA
* * * **
268436 CGTAAAAGTGCTCGATACCCCTAAAAAACTTAAAAAGGATTACAAAATAGGATGAACCTATAATA
64 CGTAAAAGTGCTCGATACCCCTAAAAGACTTAAAAAGGATTATAAAA-GGGATGAACCTATCCTA
* * * * *
268501 TATATCAACCTTTGGCAGAAGAGTGGA
128 AATATCTACCTTTGGCATAAAAGAGGA
* * * * * * * * *
268528 CCTAGTGATGACCTAGGA-CTCGATTAAAAAAATTATC-AAAATGCCCTTATGAGTATACCTTCG
1 CCGA-CGATGACGTAGGAGTTGGTTTAAAAAAATTA-CGAAAATGCCCCTAAG-GGATACCTTCG
* * * * * * *
268591 ACATGAAAGCAT-CTCGGTATCCCTAAAGGACTTAAAAATGATTATAGAAGGGATGAACCTATCC
63 ACGTAAAAG--TGCTCGATACCCCTAAAAGACTTAAAAAGGATTATAAAAGGGATGAACCTATCC
* *
268655 TAAATATCTACCTTTGACATAAAAGCGGA
126 TAAATATCTACCTTTGGCATAAAAGAGGA
* * * * *
268684 CTCGACGATGATGTAGGAGTTGGTTCTAAAAAAATTACGAAATTGCACTTAA-GGATACCTTTGA
1 C-CGACGATGACGTAGGAGTTGGTT-TAAAAAAATTACGAAAATGCCCCTAAGGGATACCTTCGA
* * *
268748 CGTAAAAGTGCCCGACACCCCTAAAAGACTTAAAAGGGATT
64 CGTAAAAGTGCTCGATACCCCTAAAAGACTTAAAAAGGATT
268789 TATAGATGTG
Statistics
Matches: 327, Mismatches: 77, Indels: 26
0.76 0.18 0.06
Matches are distributed among these distances:
154 2 0.01
155 63 0.19
156 157 0.48
157 83 0.25
158 22 0.07
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (154 bp):
CCGACGATGACGTAGGAGTTGGTTTAAAAAAATTACGAAAATGCCCCTAAGGGATACCTTCGACG
TAAAAGTGCTCGATACCCCTAAAAGACTTAAAAAGGATTATAAAAGGGATGAACCTATCCTAAAT
ATCTACCTTTGGCATAAAAGAGGA
Found at i:269902 original size:20 final size:20
Alignment explanation
Indices: 269877--269991 Score: 140
Period size: 20 Copynumber: 5.8 Consensus size: 20
269867 TTTTACCCAG
269877 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * ***
269897 ATGTATCGATGCATATAAGA
1 ATGTATCGATACATTTTTCA
269917 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
269937 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
269957 ATGTATCGATATATTCTTCA
1 ATGTATCGATACATTTTTCA
269977 ATGTATCGATACATT
1 ATGTATCGATACATT
269992 CTGTCTTTTT
Statistics
Matches: 76, Mismatches: 19, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 76 1.00
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:269932 original size:40 final size:40
Alignment explanation
Indices: 269877--269990 Score: 183
Period size: 40 Copynumber: 2.9 Consensus size: 40
269867 TTTTACCCAG
*
269877 ATGTATCGATACATTTTTCAATGTATCGATGCATATAAGA
1 ATGTATCGATACATTTTTCAATGTATCGATACATATAAGA
* *
269917 ATGTATCGATACATTTTTCAATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCAATGTATCGATACATATAAGA
* *
269957 ATGTATCGATATATTCTTCAATGTATCGATACAT
1 ATGTATCGATACATTTTTCAATGTATCGATACAT
269991 TCTGTCTTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.39
Consensus pattern (40 bp):
ATGTATCGATACATTTTTCAATGTATCGATACATATAAGA
Found at i:271155 original size:20 final size:20
Alignment explanation
Indices: 271130--271288 Score: 111
Period size: 20 Copynumber: 7.4 Consensus size: 20
271120 CAGATTTATT
271130 GATACATTTTTCAATGTATC
1 GATACATTTTTCAATGTATC
* * * *
271150 GATACATGTATGAATGTGTC
1 GATACATTTTTCAATGTATC
* *
271170 GATACATTCTTCAATGTGTC
1 GATACATTTTTCAATGTATC
*
271190 GATACGTTCTGTCTTTTTACCCAGATGTATC
1 GATA----C---ATTTTT---CA-ATGTATC
271221 GATACATTTTTCAATGTATC
1 GATACATTTTTCAATGTATC
* * *
271241 GATACATGTATGAATGTATC
1 GATACATTTTTCAATGTATC
* *
271261 GATACATTCTTCAATGTATT
1 GATACATTTTTCAATGTATC
271281 GATACATT
1 GATACATT
271289 CTGTCTTTTT
Statistics
Matches: 108, Mismatches: 20, Indels: 22
0.72 0.13 0.15
Matches are distributed among these distances:
20 83 0.77
21 2 0.02
24 6 0.06
27 5 0.05
30 2 0.02
31 10 0.09
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (20 bp):
GATACATTTTTCAATGTATC
Found at i:271267 original size:91 final size:91
Alignment explanation
Indices: 271112--271338 Score: 366
Period size: 91 Copynumber: 2.5 Consensus size: 91
271102 AAAAGTCACA
* * *
271112 TTTTTACCCAGATTTATTGATACATTTTTCAATGTATCGATACATGTATGAATGTGTCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
* *
271177 TCTTCAATGTGTCGATACGTTCTGTC
66 TCTTCAATGTATCGATACATTCTGTC
271203 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
*
271268 TCTTCAATGTATTGATACATTCTGTC
66 TCTTCAATGTATCGATACATTCTGTC
**
271294 TTTTTACCCAGATGTATCGATACATTGAAT-AATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATT-TTTCAATGTATCGATACAT
271339 CTAGTTAAAA
Statistics
Matches: 127, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
91 126 0.99
92 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (91 bp):
TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
TCTTCAATGTATCGATACATTCTGTC
Found at i:283236 original size:1 final size:1
Alignment explanation
Indices: 283225--283322 Score: 61
Period size: 1 Copynumber: 98.0 Consensus size: 1
283215 TCGTACAAAC
* * * * * * * *
283225 AAAACAAAAAAAACAAAAAAAAAAAGAAAAAAAGAAAAACAAAAAAAAACAAAAAAACAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** ** ** *
283290 ACCAAAAGCAAAAAAACCAAAAAAAATAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
283323 GGGGTTCAGA
Statistics
Matches: 72, Mismatches: 25, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 72 1.00
ACGTcount: A:0.85, C:0.10, G:0.04, T:0.01
Consensus pattern (1 bp):
A
Found at i:283237 original size:9 final size:9
Alignment explanation
Indices: 283219--283322 Score: 92
Period size: 9 Copynumber: 11.9 Consensus size: 9
283209 CATCCTTCGT
*
283219 ACAAACAAA
1 ACAAAAAAA
283228 ACAAAAAAA
1 ACAAAAAAA
283237 ACAAAAAAA
1 ACAAAAAAA
283246 A-AAAGAAAA
1 ACAAA-AAAA
*
283255 A-AAGAAAA
1 ACAAAAAAA
283263 ACAAAAAAA
1 ACAAAAAAA
283272 A-ACAAAAAA
1 ACA-AAAAAA
*
283281 ACAGAAAAA
1 ACAAAAAAA
*
283290 AC--CAAAA
1 ACAAAAAAA
*
283297 GCAAAAAAA
1 ACAAAAAAA
*
283306 CCAAAAAAA
1 ACAAAAAAA
*
283315 ATAAAAAA
1 ACAAAAAA
283323 GGGGTTCAGA
Statistics
Matches: 79, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
7 5 0.06
8 9 0.11
9 64 0.81
10 1 0.01
ACGTcount: A:0.84, C:0.12, G:0.04, T:0.01
Consensus pattern (9 bp):
ACAAAAAAA
Found at i:283262 original size:26 final size:26
Alignment explanation
Indices: 283219--283289 Score: 90
Period size: 26 Copynumber: 2.7 Consensus size: 26
283209 CATCCTTCGT
*
283219 ACAAACAAAACAAAAAAAACAAAAAAAA
1 ACAAA-AAAA-AAGAAAAACAAAAAAAA
283247 A-AAGAAAAAAAGAAAAACAAAAAAAA
1 ACAA-AAAAAAAGAAAAACAAAAAAAA
*
283273 ACAAAAAAACAGAAAAA
1 ACAAAAAAAAAGAAAAA
283290 ACCAAAAGCA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
26 29 0.74
27 8 0.21
28 2 0.05
ACGTcount: A:0.86, C:0.10, G:0.04, T:0.00
Consensus pattern (26 bp):
ACAAAAAAAAAGAAAAACAAAAAAAA
Found at i:283279 original size:34 final size:34
Alignment explanation
Indices: 283221--283315 Score: 113
Period size: 34 Copynumber: 2.8 Consensus size: 34
283211 TCCTTCGTAC
*
283221 AAAC-AAAACAAAAAAAACAAAAAAAAAAAGAAAA
1 AAACAAAAACAAAAAAAA-ACAAAAAAAAAGAAAA
* *
283255 AAAGAAAAACAAAAAAAAACAAAAAAACAGAAAA
1 AAACAAAAACAAAAAAAAACAAAAAAAAAGAAAA
* * *
283289 AACCAAAAGC-AAAAAAACCAAAAAAAA
1 AAACAAAAACAAAAAAAAACAAAAAAAA
283316 TAAAAAAGGG
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
33 15 0.29
34 24 0.46
35 13 0.25
ACGTcount: A:0.84, C:0.12, G:0.04, T:0.00
Consensus pattern (34 bp):
AAACAAAAACAAAAAAAAACAAAAAAAAAGAAAA
Found at i:284600 original size:28 final size:28
Alignment explanation
Indices: 284569--284919 Score: 449
Period size: 28 Copynumber: 12.4 Consensus size: 28
284559 CGTTCATCTC
284569 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
284597 TTCAAAGCCCACAAGTAAGTGGCATCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
284625 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
284653 TTCAAAGCCCATAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
284681 TTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
284709 TTCAAAGCCCACAAGTCAGTGGCAT-CT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
284736 CTTCAAAAGACCACAAGTCAGTGGCATCCT
1 -TTC-AAAGCCCACAAGTCAGTGGCATCCT
* *
284766 TCCAAAGCCCACAAATCAGTGGCA-CCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
* *
284793 TTCCAAAGCCCACAAGTTAGTGGCACCCT
1 TT-CAAAGCCCACAAGTCAGTGGCATCCT
* * *
284822 CTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCATCCT
*
284850 CTCAAAGCCCACAA-TCAGTGGCATACCTT
1 TTCAAAGCCCACAAGTCAGTGGCAT-CC-T
* * *
284879 TTCAAAGCCCACAAATCGGTGACA-CCTT
1 TTCAAAGCCCACAAGTCAGTGGCATCC-T
284907 TTCAAATGCCCAC
1 TTCAAA-GCCCAC
284920 GTAAGTCGAT
Statistics
Matches: 291, Mismatches: 23, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
27 14 0.05
28 221 0.76
29 47 0.16
30 9 0.03
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.21
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCATCCT
Found at i:285046 original size:45 final size:46
Alignment explanation
Indices: 284976--285098 Score: 122
Period size: 49 Copynumber: 2.6 Consensus size: 46
284966 AAGTCCCATA
* * *
284976 TCACTGGCATTGAATAAGCATATTGGCACCATT-ATTGGCCCAATG
1 TCACTGGCCTTGAATAAGCACATTGGCACCATTCATTAGCCCAATG
* ** *
285021 TCACTGGCCTTGAATCAGCACATTGGTCTACTTTTCCCTTAGCCCAATG
1 TCACTGGCCTTGAATAAGCACATTGG-C-ACCATT-CATTAGCCCAATG
* **
285070 TCGCTGGCCTTGAATTGGCACATTGGCAC
1 TCACTGGCCTTGAATAAGCACATTGGCAC
285099 TTCTCTTATC
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
45 23 0.36
46 1 0.02
47 6 0.09
48 1 0.02
49 33 0.52
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (46 bp):
TCACTGGCCTTGAATAAGCACATTGGCACCATTCATTAGCCCAATG
Found at i:285842 original size:20 final size:20
Alignment explanation
Indices: 285817--285888 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
285807 TACCCAGATA
285817 TATCGATACATTTTTCAATG
1 TATCGATACATTTTTCAATG
* * *
285837 TATCGATACATGTATGAATG
1 TATCGATACATTTTTCAATG
* * *
285857 CATCGATATATTCTTCAATG
1 TATCGATACATTTTTCAATG
*
285877 TGTCGATACATT
1 TATCGATACATT
285889 CTGTCTTTTT
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (20 bp):
TATCGATACATTTTTCAATG
Found at i:285932 original size:20 final size:20
Alignment explanation
Indices: 285904--285959 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
285894 TTTTTACCCA
* * *
285904 AATGGATCGATACATTTTTT
1 AATGTATCGATACATTTATG
*
285924 AATGTATCGATACATGTATG
1 AATGTATCGATACATTTATG
*
285944 AATGTATAGATACATT
1 AATGTATCGATACATT
285960 CTGTCTTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTTATG
Found at i:294912 original size:13 final size:13
Alignment explanation
Indices: 294894--294918 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
294884 CATTTTTGGG
294894 TGTATCGATACAA
1 TGTATCGATACAA
294907 TGTATCGATACA
1 TGTATCGATACA
294919 TATGGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:294934 original size:32 final size:32
Alignment explanation
Indices: 294871--294938 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
294861 CGTTACAAGC
*
294871 CAATGTATCAATACATTTTTGGGTGTATCGATA
1 CAATGTATCAATACA-TTATGGGTGTATCGATA
*
294904 CAATGTATCGATACA-TATGGTGTGTATCGATA
1 CAATGTATCAATACATTATGG-GTGTATCGATA
294936 CAA
1 CAA
294939 ATTTAGCTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
31 4 0.12
32 14 0.44
33 14 0.44
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (32 bp):
CAATGTATCAATACATTATGGGTGTATCGATA
Found at i:294999 original size:20 final size:20
Alignment explanation
Indices: 294970--295021 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
294960 GCCAATGACT
* **
294970 TGTATTGATACATTTTTTCA
1 TGTATCGATACATTTGGTCA
294990 TGTATCGATACATTTGGTCA
1 TGTATCGATACATTTGGTCA
295010 TGTATCGATACA
1 TGTATCGATACA
295022 ATGTATCAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.44
Consensus pattern (20 bp):
TGTATCGATACATTTGGTCA
Found at i:295614 original size:21 final size:22
Alignment explanation
Indices: 295588--295631 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
295578 TTTTCTTTTC
295588 TCTCCCCCTTAATAAAA-AATT
1 TCTCCCCCTTAATAAAATAATT
*
295609 TCTCCCCCTTAGTAAAATAATT
1 TCTCCCCCTTAATAAAATAATT
295631 T
1 T
295632 AATACTTTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.34, C:0.27, G:0.02, T:0.36
Consensus pattern (22 bp):
TCTCCCCCTTAATAAAATAATT
Found at i:297020 original size:21 final size:21
Alignment explanation
Indices: 296991--297040 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 21
296981 TGCTAGTGTG
*
296991 GGGGCTGCCCGGTTGCGACCTA
1 GGGG-TGCCCGGTCGCGACCTA
*
297013 GGGGTG-CCGGTCGCGACCTG
1 GGGGTGCCCGGTCGCGACCTA
297033 GTGGGTGC
1 G-GGGTGC
297041 TGCCTAGGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 13 0.54
21 7 0.29
22 4 0.17
ACGTcount: A:0.06, C:0.28, G:0.48, T:0.18
Consensus pattern (21 bp):
GGGGTGCCCGGTCGCGACCTA
Found at i:303680 original size:13 final size:13
Alignment explanation
Indices: 303662--303718 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
303652 CATTTTTGGG
303662 TGTATCGATACAA
1 TGTATCGATACAA
303675 TGTATCGATACATA
1 TGTATCGATACA-A
*
303689 TGGTGTGTATTGATACAA
1 -----TGTATCGATACAA
303707 TGTATCGATACA
1 TGTATCGATACA
303719 TATGGTGTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 23 0.64
14 1 0.03
18 1 0.03
19 11 0.31
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:303703 original size:19 final size:19
Alignment explanation
Indices: 303675--303737 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
303665 ATCGATACAA
303675 TGTATCGATACATATGGTG
1 TGTATCGATACATATGGTG
*
303694 TGTATTGATACA-A-----
1 TGTATCGATACATATGGTG
303707 TGTATCGATACATATGGTG
1 TGTATCGATACATATGGTG
303726 TGTATCGATACA
1 TGTATCGATACA
303738 AATTTAGCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 11 0.31
14 1 0.03
18 1 0.03
19 23 0.64
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATATGGTG
Found at i:303704 original size:32 final size:32
Alignment explanation
Indices: 303639--303738 Score: 157
Period size: 32 Copynumber: 3.1 Consensus size: 32
303629 CGTTACAAGC
*
303639 CAATGTATCGATACATTTTTGG-GTGTATCGATA
1 CAATGTATCGATACA--TATGGTGTGTATCGATA
*
303672 CAATGTATCGATACATATGGTGTGTATTGATA
1 CAATGTATCGATACATATGGTGTGTATCGATA
303704 CAATGTATCGATACATATGGTGTGTATCGATA
1 CAATGTATCGATACATATGGTGTGTATCGATA
303736 CAA
1 CAA
303739 ATTTAGCTAC
Statistics
Matches: 63, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
31 4 0.06
32 44 0.70
33 15 0.24
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (32 bp):
CAATGTATCGATACATATGGTGTGTATCGATA
Found at i:303795 original size:20 final size:20
Alignment explanation
Indices: 303770--303821 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
303760 GCCAATGACT
**
303770 TGTATCGATACATTTTTTCA
1 TGTATCGATACATTTGGTCA
303790 TGTATCGATACATTTGGTCA
1 TGTATCGATACATTTGGTCA
303810 TGTATCGATACA
1 TGTATCGATACA
303822 ATGTATCGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTTGGTCA
Found at i:303827 original size:13 final size:13
Alignment explanation
Indices: 303809--303837 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
303799 ACATTTGGTC
303809 ATGTATCGATACA
1 ATGTATCGATACA
303822 ATGTATCGATACA
1 ATGTATCGATACA
303835 ATG
1 ATG
303838 CAGTCTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:303847 original size:33 final size:33
Alignment explanation
Indices: 303789--303854 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
303779 ACATTTTTTC
*
303789 ATGTATCGATACATTTGGTCATGTATCGATACA
1 ATGTATCGATACATATGGTCATGTATCGATACA
303822 ATGTATCGATACA-ATGCAGTC-TGTATCGATACA
1 ATGTATCGATACATATG--GTCATGTATCGATACA
303855 TTTAAATGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
32 2 0.07
33 25 0.83
34 3 0.10
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (33 bp):
ATGTATCGATACATATGGTCATGTATCGATACA
Found at i:309894 original size:20 final size:20
Alignment explanation
Indices: 309841--309895 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
309831 AAATTCCCAG
**
309841 ATGTATCGATACAAAGATCA
1 ATGTATCGATACATTGATCA
309861 ATGTATCGATACATTGAAT-A
1 ATGTATCGATACATTG-ATCA
309881 ATGTATCGATACATT
1 ATGTATCGATACATT
309896 TCCTTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.94
21 2 0.06
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGATCA
Found at i:315887 original size:17 final size:17
Alignment explanation
Indices: 315867--315910 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
315857 AAAAAAACCC
315867 AAAATAAAAGCAAACAA
1 AAAATAAAAGCAAACAA
*
315884 AAAA-AACAAACAAACAA
1 AAAATAA-AAGCAAACAA
*
315901 AAAATGAAAG
1 AAAATAAAAG
315911 GTCCAGATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
16 2 0.09
17 19 0.86
18 1 0.05
ACGTcount: A:0.77, C:0.11, G:0.07, T:0.05
Consensus pattern (17 bp):
AAAATAAAAGCAAACAA
Found at i:317139 original size:13 final size:13
Alignment explanation
Indices: 317082--317169 Score: 81
Period size: 14 Copynumber: 6.6 Consensus size: 13
317072 CAATTTGCCA
317082 TTTGTCAAGAAAT
1 TTTGTCAAGAAAT
*
317095 GGTTGTCAAGAAAT
1 -TTTGTCAAGAAAT
* * *
317109 TATCGTTAAGAACT
1 T-TTGTCAAGAAAT
317123 TTTGTCAAG-AAT
1 TTTGTCAAGAAAT
*
317135 GTTTGTC-AGAAAC
1 -TTTGTCAAGAAAT
317148 TTTGTCAAGAAATT
1 TTTGTCAAGAAA-T
317162 TTTGTCAA
1 TTTGTCAA
317170 TATGACCCTT
Statistics
Matches: 59, Mismatches: 10, Indels: 10
0.75 0.13 0.13
Matches are distributed among these distances:
12 10 0.17
13 19 0.32
14 30 0.51
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (13 bp):
TTTGTCAAGAAAT
Found at i:317165 original size:26 final size:27
Alignment explanation
Indices: 317082--317169 Score: 83
Period size: 26 Copynumber: 3.3 Consensus size: 27
317072 CAATTTGCCA
* *
317082 TTTGTCAAGAAATGGTTGTCAAGAAATT
1 TTTGTCAAGAACT-TTTGTCAAGAAATT
* * * *
317110 ATCGTTAAGAACTTTTGTCAAG-AATG
1 TTTGTCAAGAACTTTTGTCAAGAAATT
317136 TTTGTC-AGAAAC-TTTGTCAAGAAATT
1 TTTGTCAAG-AACTTTTGTCAAGAAATT
317162 TTTGTCAA
1 TTTGTCAA
317170 TATGACCCTT
Statistics
Matches: 47, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
25 11 0.23
26 18 0.38
27 9 0.19
28 9 0.19
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
TTTGTCAAGAACTTTTGTCAAGAAATT
Found at i:317216 original size:28 final size:28
Alignment explanation
Indices: 317176--317890 Score: 723
Period size: 28 Copynumber: 25.6 Consensus size: 28
317166 TCAATATGAC
* * *
317176 CCTTTTAAAGCCCACGAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
*
317204 CCTTCCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
*
317232 CCTTTCAAAGCCCACAACTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
*
317260 CCTTTCAAAGCCCACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
** *
317288 CCTTTTGAAGCCCATAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
*
317316 -CTCTTCAAAGCCCACAAGTTAGTGGCAT
1 CCT-TTCAAAGCCCACAAGTCAGTGGCAT
* * *
317344 CCTTTCAACGCCCATAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* *
317372 CCATTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* *
317400 -CTCTTCAAAGCCCACAGGTTAGTGGCAT
1 CCT-TTCAAAGCCCACAAGTCAGTGGCAT
* *
317428 CCTTTCAAAGTCCACAAGTTAGTGGCA-
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* *
317455 ACTCTTCAAAGCCCACGAGTCAGTGGCA-
1 CCT-TTCAAAGCCCACAAGTCAGTGGCAT
* **
317483 CTTTTTCAAAGCCCACCGGTCAGTGGCA-
1 C-CTTTCAAAGCCCACAAGTCAGTGGCAT
* *
317511 CCTTTTCTAAGCCCACAAGTCAATGGCAT
1 CC-TTTCAAAGCCCACAAGTCAGTGGCAT
*
317540 CCATTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* *
317568 CTCTTT-AAAGCCCACGAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTCAGTGGCAT
* * *
317596 CCTTTCAAAGTCCATAAGTCTGTGGCA-
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* * *
317623 CCTCTTTAAAGCCCACGAGTCAGTGGTA-
1 CCT-TTCAAAGCCCACAAGTCAGTGGCAT
* ** *
317651 CTTTTTCAAAGCCCACCGGTCAGTGGCAC
1 C-CTTTCAAAGCCCACAAGTCAGTGGCAT
* *
317680 CCTGTCTAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* ** *
317708 CCTTCCAAAGCTAACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
*
317736 CC-TTCTAAAGCCCACAAGTCAGTGACAT
1 CCTTTC-AAAGCCCACAAGTCAGTGGCAT
* *
317764 CTTTTCAAAGCCCACAAGTCAATGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
* * ** *
317792 CATTTTAAAGTACATAAGTCAGTGGCA-
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
** *
317819 CCTCTTCAAAGCCCATGAGTTAGTGGCA-
1 CCT-TTCAAAGCCCACAAGTCAGTGGCAT
* * * *
317847 CTTTTCGAAGCCCATAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTCAGTGGCAT
317875 CCTTTCAAAGCCCACA
1 CCTTTCAAAGCCCACA
317891 CGAGTTGGTG
Statistics
Matches: 572, Mismatches: 98, Indels: 34
0.81 0.14 0.05
Matches are distributed among these distances:
27 38 0.07
28 519 0.91
29 15 0.03
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (28 bp):
CCTTTCAAAGCCCACAAGTCAGTGGCAT
Found at i:318710 original size:51 final size:51
Alignment explanation
Indices: 318634--318779 Score: 258
Period size: 51 Copynumber: 2.9 Consensus size: 51
318624 AAAAGTCACA
318634 TTTTTACCCAGATGTATCGATACATTCTTCAATGTATCGATACATTCTGTC
1 TTTTTACCCAGATGTATCGATACATTCTTCAATGTATCGATACATTCTGTC
* *
318685 TTTTAACCCAGATGTATCGATACATTCTTCAATGTATCTATACATTCTGTC
1 TTTTTACCCAGATGTATCGATACATTCTTCAATGTATCGATACATTCTGTC
*
318736 TTTTTA-CCAGATGTATCGATACATTTTTCAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTCTTCAATGTATCGATACAT
318780 CTAGTTAAAA
Statistics
Matches: 90, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
50 36 0.40
51 54 0.60
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.42
Consensus pattern (51 bp):
TTTTTACCCAGATGTATCGATACATTCTTCAATGTATCGATACATTCTGTC
Found at i:323714 original size:164 final size:167
Alignment explanation
Indices: 323382--324064 Score: 631
Period size: 167 Copynumber: 4.2 Consensus size: 167
323372 ACAATGTTAA
** * * * * *
323382 ATGAATTTTAAAAATTTTAAACCAAGAAAAAT-CCCCTCAAAAAAATTTACGAAGAAGAAAACTC
1 ATGAATTTTAAAAATTGAAAACCGAGAAAAATGCCCTTAAAAAAAATTTACGAAGTAGAAAACAC
** * ** * ** * * *
323446 GGTTTTTCAGAAAAAAAAGAATTTCAACAAAAAAATCTAAAACT-CATGAAAATGAATTAATATT
66 CATATTTCAGAAAAAAGGGAGTTTCAAGGAAAAAATC-AAAAATGAATGAAAATGAATGAAT-TT
323510 TTAAAAAA-GATTTAATATGAATCAAATAATGATGTTTG
129 TTAAAAAATGATTTAATATGAATCAAATAATGATGTTTG
* * ** *
323548 ATGAATTTTAAAAATTGAAAACTGATAAAAAT-CTCC-TCGAAAAAATTTACGGAGTAGAAAACA
1 ATGAATTTTAAAAATTGAAAACCGAGAAAAATGC-CCTTAAAAAAAATTTACGAAGTAGAAAACA
* * * *
323611 CCGTATTTCAG-AAAAGGGGAGTTTTAA-GAAAAAATGAAAAATGAATGAAAATGAATGAATTTT
65 CCATATTTCAGAAAAAAGGGAGTTTCAAGGAAAAAATCAAAAATGAATGAAAATGAATGAATTTT
323674 TAAAAAATGATTTAATATGAATCAAATAATGATGTTTG
130 TAAAAAATGATTTAATATGAATCAAATAATGATGTTTG
* *
323712 ATGCATTTTAAAAATTGAAAACCGAGAAAAATGCCCTTAAAAAAAATTTACGAAGTAGAAAATAC
1 ATGAATTTTAAAAATTGAAAACCGAGAAAAATGCCCTTAAAAAAAATTTACGAAGTAGAAAACAC
* *
323777 CATATTTCGGAAAAAATGGAGTTTCAAGGAAAAAATCAAAAATGAATGAAAATGAATGAATTTTT
66 CATATTTCAGAAAAAAGGGAGTTTCAAGGAAAAAATCAAAAATGAATGAAAATGAATGAATTTTT
* * * * *
323842 AAAAACTAATTTAATATGAAAT-AAATGATAATATTTG
131 AAAAAATGATTTAATATG-AATCAAATAATGATGTTTG
* * * * *
323879 ATGAAATTTAAAAATTAAAAACCAAGAAAAATTCCCTTGAAAAAAA---AC-----AG-------
1 ATGAATTTTAAAAATTGAAAACCGAGAAAAATGCCCTTAAAAAAAATTTACGAAGTAGAAAACAC
* ** *
323929 CGTATTTCAGAAAAAAAGGG-GATTTCAAGGAAAAAATTCAAAAATTTATGAAAATGAATGGATT
66 CATATTTCAG-AAAAAAGGGAG-TTTCAAGGAAAAAA-TCAAAAATGAATGAAAATGAATGAATT
* * * * ** * *
323993 TTTGAGAATTGATTTAATATGAATTAAATAACAATATTTA
128 TTTAAAAAATGATTTAATATGAATCAAATAATGATGTTTG
* * *
324033 ATGAATTTTAAAAATTAAAAATCAAGAAAAAT
1 ATGAATTTTAAAAATTGAAAACCGAGAAAAAT
324065 CTTGAAAGAA
Statistics
Matches: 445, Mismatches: 60, Indels: 36
0.82 0.11 0.07
Matches are distributed among these distances:
152 9 0.02
153 25 0.06
154 83 0.19
159 2 0.00
163 15 0.03
164 85 0.19
165 44 0.10
166 73 0.16
167 106 0.24
168 3 0.01
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.28
Consensus pattern (167 bp):
ATGAATTTTAAAAATTGAAAACCGAGAAAAATGCCCTTAAAAAAAATTTACGAAGTAGAAAACAC
CATATTTCAGAAAAAAGGGAGTTTCAAGGAAAAAATCAAAAATGAATGAAAATGAATGAATTTTT
AAAAAATGATTTAATATGAATCAAATAATGATGTTTG
Found at i:323955 original size:153 final size:153
Alignment explanation
Indices: 323779--324064 Score: 412
Period size: 154 Copynumber: 1.9 Consensus size: 153
323769 GAAAATACCA
* *
323779 TATTTCGGAAAAAATGGAGTTTCAAGGAAAAAA-TCAAAAATGAATGAAAATGAATGAATTTTTA
1 TATTTCAGAAAAAAAGGAGTTTCAAGGAAAAAATTCAAAAATGAATGAAAATGAATGAATTTTTA
* * *
323843 AAAACTAATTTAATATGAAATAAATGATAATATTTGATGAAATTTAAAAATTAAAAACCAAGAAA
66 AAAACTAATTTAATATGAAATAAATAACAATATTTAATGAAATTTAAAAATTAAAAACCAAGAAA
323908 AATTCCCTTGAAAAAAAACAGCG
131 AATTCCCTTGAAAAAAAACAGCG
* ** *
323931 TATTTCAGAAAAAAAGGGGATTTCAAGGAAAAAATTCAAAAATTTATGAAAATGAATGGATTTTT
1 TATTTCAGAAAAAAAGGAG-TTTCAAGGAAAAAATTCAAAAATGAATGAAAATGAATGAATTTTT
* * * * * * *
323996 GAGAATTGATTTAATATGAATTAAATAACAATATTTAATGAATTTTAAAAATTAAAAATCAAGAA
65 AAAAACTAATTTAATATGAAATAAATAACAATATTTAATGAAATTTAAAAATTAAAAACCAAGAA
324061 AAAT
130 AAAT
324065 CTTGAAAGAA
Statistics
Matches: 116, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
152 16 0.14
153 14 0.12
154 86 0.74
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29
Consensus pattern (153 bp):
TATTTCAGAAAAAAAGGAGTTTCAAGGAAAAAATTCAAAAATGAATGAAAATGAATGAATTTTTA
AAAACTAATTTAATATGAAATAAATAACAATATTTAATGAAATTTAAAAATTAAAAACCAAGAAA
AATTCCCTTGAAAAAAAACAGCG
Found at i:325166 original size:39 final size:39
Alignment explanation
Indices: 325108--325183 Score: 118
Period size: 39 Copynumber: 1.9 Consensus size: 39
325098 CTGACGGGGA
* *
325108 AAAAAAGATGAAGAGGTTTCCCTG-GTCTAAGCTGACGAG
1 AAAAAAGATGAAGAAGTTTCCC-GAGTCTAAGCCGACGAG
325147 AAAAAAGATGAAGAAGTTTCCCGAGTCTAAGCCGACG
1 AAAAAAGATGAAGAAGTTTCCCGAGTCTAAGCCGACG
325184 GGCAGATGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 1 0.03
39 33 0.97
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.18
Consensus pattern (39 bp):
AAAAAAGATGAAGAAGTTTCCCGAGTCTAAGCCGACGAG
Found at i:325231 original size:43 final size:42
Alignment explanation
Indices: 325176--325547 Score: 158
Period size: 43 Copynumber: 8.8 Consensus size: 42
325166 CCCGAGTCTA
* *
325176 AGCCGACGGGCAGATGATTAATAAAGGAAGTCTCCTAGGACTG
1 AGCCGATGGGCAGACGATTAATAAAGG-AGTCTCCTAGGACTG
* * * * *
325219 AGTCGATGGGCAGACGA-TAGATGAA-GAGTCT-CTCGAGTCTA
1 AGCCGATGGGCAGACGATTA-ATAAAGGAGTCTCCTAG-GACTG
* * *
325260 AGCCGATGGGCAGACGATTGATAAAGGGAGTCTCCCAAGACTG
1 AGCCGATGGGCAGACGATTAATAAA-GGAGTCTCCTAGGACTG
** * * * ** ** *
325303 AGCTAATGGGCAGACAATTTATAAAAGAGTCTCCCGGGTTTA
1 AGCCGATGGGCAGACGATTAATAAAGGAGTCTCCTAGGACTG
** * * *
325345 AGCCGATGGGCAGGTGATTGATAAAGGAAGTCTCTTGGGACTG
1 AGCCGATGGGCAGACGATTAATAAAGG-AGTCTCCTAGGACTG
** * * * * * *
325388 AGGTGATGGGCAAACAATTGATAAAGTAGTCTCCTGGGTCTG
1 AGCCGATGGGCAGACGATTAATAAAGGAGTCTCCTAGGACTG
* *** * * * * * * * *
325430 AGCTGACAAGTAGACTATTGATAAAGAAGTCT-TTCGGGTCTA
1 AGCCGATGGGCAGACGATTAATAAAGGAGTCTCCT-AGGACTG
* * * * * * * *
325472 AACCGATAGGTAGGCAATTGATAAAGGAAGTCTCCTGGGATTG
1 AGCCGATGGGCAGACGATTAATAAAGG-AGTCTCCTAGGACTG
* *
325515 AGCCGACGGGCAGACGATTGATAAAGGAGTCTC
1 AGCCGATGGGCAGACGATTAATAAAGGAGTCTC
325548 TCGAGTCTGA
Statistics
Matches: 246, Mismatches: 73, Indels: 21
0.72 0.21 0.06
Matches are distributed among these distances:
40 3 0.01
41 29 0.12
42 104 0.42
43 108 0.44
44 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.30, T:0.22
Consensus pattern (42 bp):
AGCCGATGGGCAGACGATTAATAAAGGAGTCTCCTAGGACTG
Found at i:325267 original size:41 final size:41
Alignment explanation
Indices: 325152--325277 Score: 121
Period size: 43 Copynumber: 3.0 Consensus size: 41
325142 ACGAGAAAAA
* * *
325152 AGATGAAGAAGTTTCCCGAGTCTAAGCCGACGGGCAGATGATT
1 AGATGAAGAAGTCT-CCGAGTCTAAGCCGATGGGCAGACGA-T
* * * * *
325195 A-ATAAAGGAAGTCTCCTAGGACTGAGTCGATGGGCAGACGAT
1 AGATGAA-GAAGTCTCCGA-GTCTAAGCCGATGGGCAGACGAT
325237 AGATGAAG-AGTCTCTCGAGTCTAAGCCGATGGGCAGACGAT
1 AGATGAAGAAGTCTC-CGAGTCTAAGCCGATGGGCAGACGAT
325278 TGATAAAGGG
Statistics
Matches: 66, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
41 26 0.39
42 12 0.18
43 28 0.42
ACGTcount: A:0.31, C:0.18, G:0.31, T:0.20
Consensus pattern (41 bp):
AGATGAAGAAGTCTCCGAGTCTAAGCCGATGGGCAGACGAT
Found at i:325312 original size:84 final size:84
Alignment explanation
Indices: 325152--325378 Score: 276
Period size: 84 Copynumber: 2.7 Consensus size: 84
325142 ACGAGAAAAA
* * * * *
325152 AGATGAAGAAGTTTCCCGAGTCTAAGCCGACGGGCAGATGATTAATAAAGGAAGTCTCCTAGGAC
1 AGATGAAG-AGTCTCCCGAGTCTAAGCCGATGGGCAGATGATTGATAAAGGAAGTCTCCCAAGAC
* *
325217 TGAGTCGATGGGCAGACGAT
65 TGAGTCAATGGGCAGACAAT
* * *
325237 AGATGAAGAGTCTCTCGAGTCTAAGCCGATGGGCAGACGATTGATAAAGGGAGTCTCCCAAGACT
1 AGATGAAGAGTCTCCCGAGTCTAAGCCGATGGGCAGATGATTGATAAAGGAAGTCTCCCAAGACT
325302 GAG-CTAATGGGCAGACAAT
66 GAGTC-AATGGGCAGACAAT
** * * * *
325321 TTATAAAAGAGTCTCCCGGGTTTAAGCCGATGGGCAGGTGATTGATAAAGGAAGTCTC
1 AGAT-GAAGAGTCTCCCGAGTCTAAGCCGATGGGCAGATGATTGATAAAGGAAGTCTC
325379 TTGGGACTGA
Statistics
Matches: 121, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
83 1 0.01
84 66 0.55
85 54 0.45
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (84 bp):
AGATGAAGAGTCTCCCGAGTCTAAGCCGATGGGCAGATGATTGATAAAGGAAGTCTCCCAAGACT
GAGTCAATGGGCAGACAAT
Found at i:325387 original size:85 final size:83
Alignment explanation
Indices: 325165--325421 Score: 307
Period size: 85 Copynumber: 3.0 Consensus size: 83
325155 TGAAGAAGTT
* *
325165 TCCCGAGTCTAAGCCGACGGGCAGATGATTAATAAAGGAAGTCTCCTAGGACTGAGTCGATGGGC
1 TCCCGAGTCTAAGCCGATGGGCAGATGATTGATAAAGGAAGTCTCCTAGGACTGAGT-GATGGGC
* * *
325230 AGACGATAGATGAAGAGTC
65 AGACAATTGATAAAGAGTC
* * * * * *
325249 TCTCGAGTCTAAGCCGATGGGCAGACGATTGATAAAGGGAGTCTCCCAAGACTGAGCTAATGGGC
1 TCCCGAGTCTAAGCCGATGGGCAGATGATTGATAAAGGAAGTCTCCTAGGACTGAG-TGATGGGC
*
325314 AGACAATTTATAAAAGAGTC
65 AGACAATTGAT-AAAGAGTC
* * * * *
325334 TCCCGGGTTTAAGCCGATGGGCAGGTGATTGATAAAGGAAGTCTCTTGGGACTGAGGTGATGGGC
1 TCCCGAGTCTAAGCCGATGGGCAGATGATTGATAAAGGAAGTCTCCTAGGACTGA-GTGATGGGC
*
325399 AAACAATTGATAAAGTAGTC
65 AGACAATTGATAAAG-AGTC
325419 TCC
1 TCC
325422 TGGGTCTGAG
Statistics
Matches: 144, Mismatches: 25, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
84 67 0.47
85 76 0.53
86 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.22
Consensus pattern (83 bp):
TCCCGAGTCTAAGCCGATGGGCAGATGATTGATAAAGGAAGTCTCCTAGGACTGAGTGATGGGCA
GACAATTGATAAAGAGTC
Found at i:325556 original size:127 final size:126
Alignment explanation
Indices: 325260--325566 Score: 319
Period size: 127 Copynumber: 2.4 Consensus size: 126
325250 CTCGAGTCTA
* * * *** *
325260 AGCCGATGGGCAGACGATTGATAAAGGGAGTCTCCCAAGACTGAGCTAATGGGCAGACAATTTAT
1 AGCCGATGGGCAGACGATTGATAAA-GGAGTCT-CCGAGTCTGAGCTGACAAGCAGACAATTGAT
* * * ** *
325325 AAAAGAGTCTCCCGGGTTTAAGCCGATGGGCAGGTGATTGATAAAGGAAGTCTCTTGGGACTG
64 AAAAGAGTCTCCCGGGTCTAAACCGATAGGCAGGCAATTGATAAAGGAAGTCTCCTGGGACTG
** * * * * * *
325388 AGGTGATGGGCAAACAATTGATAAAGTAGTCTCCTGGGTCTGAGCTGACAAGTAGACTATTGAT-
1 AGCCGATGGGCAGACGATTGATAAAGGAGTCTCC-GAGTCTGAGCTGACAAGCAGACAATTGATA
** * *
325452 AAAGAAGTCTTTCGGGTCTAAACCGATAGGTAGGCAATTGATAAAGGAAGTCTCCTGGGATTG
65 AAAG-AGTCTCCCGGGTCTAAACCGATAGGCAGGCAATTGATAAAGGAAGTCTCCTGGGACTG
* *
325515 AGCCGACGGGCAGACGATTGATAAAGGAGTCTCTCGAGTCTGAGTTGACAAG
1 AGCCGATGGGCAGACGATTGATAAAGGAGTCTC-CGAGTCTGAGCTGACAAG
325567 AAAAAAAAGA
Statistics
Matches: 143, Mismatches: 33, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
126 6 0.04
127 115 0.80
128 22 0.15
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.23
Consensus pattern (126 bp):
AGCCGATGGGCAGACGATTGATAAAGGAGTCTCCGAGTCTGAGCTGACAAGCAGACAATTGATAA
AAGAGTCTCCCGGGTCTAAACCGATAGGCAGGCAATTGATAAAGGAAGTCTCCTGGGACTG
Found at i:325869 original size:44 final size:44
Alignment explanation
Indices: 325779--326135 Score: 204
Period size: 44 Copynumber: 8.2 Consensus size: 44
325769 ATGCAAATCG
* * *
325779 TTTGACTAGGGTGGTAA-CATACGTCAAAGAGGAA-AGAGGCAAA
1 TTTGACCAGGGTGGTAACCATACGTCAAACAGGAAGA-AGGCAGA
* * *
325822 TTTGACCAAGGTGGTAACCATACGTCAGACAGGAAGAAGGTAGA
1 TTTGACCAGGGTGGTAACCATACGTCAAACAGGAAGAAGGCAGA
* * * * * *
325866 TTTGACTAAGGTGATAACCATACGTCAAATTAGAATAAAAGG-A-A
1 TTTGACCAGGGTGGTAACCATACGTCAAA-CAGGA-AGAAGGCAGA
* * * *
325910 TCTAACCAGGGTGGTAACCATAAGTC--ACAGG-AG-AGGCATA
1 TTTGACCAGGGTGGTAACCATACGTCAAACAGGAAGAAGGCAGA
* * * * **
325950 TTTGACCAGGGTGGTAACCATATGTTAAATTA-GAATAA-AAAGAA
1 TTTGACCAGGGTGGTAACCATACGTCAAA-CAGGAAGAAGGCAG-A
* * *
325994 TCTGACCAGGGTGGTAACCA-ATCGTCAGACAAG-AGAGAGGCAGA
1 TTTGACCAGGGTGGTAACCATA-CGTCAAACAGGAAGA-AGGCAGA
* * * * **
326038 TTTGACCAAGGCGGTAACCATACGTCAAATCA-AAATAA-AAAGAA
1 TTTGACCAGGGTGGTAACCATACGTCAAA-CAGGAAGAAGGCAG-A
* * * *
326082 TCTGACCAGAGTGGTAACCATACGTCAAATAGGAAAAAGG-AGA
1 TTTGACCAGGGTGGTAACCATACGTCAAACAGGAAGAAGGCAGA
326125 GTTTGACCAGG
1 -TTTGACCAGG
326136 CCCTAACACC
Statistics
Matches: 235, Mismatches: 56, Indels: 45
0.70 0.17 0.13
Matches are distributed among these distances:
38 3 0.01
39 2 0.01
40 23 0.10
41 2 0.01
42 3 0.01
43 26 0.11
44 159 0.68
45 12 0.05
46 5 0.02
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (44 bp):
TTTGACCAGGGTGGTAACCATACGTCAAACAGGAAGAAGGCAGA
Found at i:325923 original size:88 final size:87
Alignment explanation
Indices: 325824--326108 Score: 371
Period size: 88 Copynumber: 3.3 Consensus size: 87
325814 GAGGCAAATT
* * * *
325824 TGACCAAGGTGGTAACCATACGTCAGACAGGAAGAAGGTAGATTTGACTAAGGTGATAACCATAC
1 TGACCAGGGTGGTAACCATACGTCAGACAGG-AGAAGGCAGATTTGACCAAGGTGGTAACCATAC
*
325889 GTCAAATTAGAATAAAAGGAATC
65 GTCAAATTAGAATAAAAAGAATC
* * * * *
325912 TAACCAGGGTGGTAACCATAAGTC--ACAGGAG-AGGCATATTTGACCAGGGTGGTAACCATATG
1 TGACCAGGGTGGTAACCATACGTCAGACAGGAGAAGGCAGATTTGACCAAGGTGGTAACCATACG
*
325974 TTAAATTAGAATAAAAAGAATC
66 TCAAATTAGAATAAAAAGAATC
* *
325996 TGACCAGGGTGGTAACCA-ATCGTCAGACAAGAGAGAGGCAGATTTGACCAAGGCGGTAACCATA
1 TGACCAGGGTGGTAACCATA-CGTCAGACAGGAGA-AGGCAGATTTGACCAAGGTGGTAACCATA
* *
326060 CGTCAAATCAAAATAAAAAGAATC
64 CGTCAAATTAGAATAAAAAGAATC
*
326084 TGACCAGAGTGGTAACCATACGTCA
1 TGACCAGGGTGGTAACCATACGTCA
326109 AATAGGAAAA
Statistics
Matches: 169, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
83 1 0.01
84 65 0.38
85 2 0.01
86 11 0.07
88 89 0.53
89 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.20
Consensus pattern (87 bp):
TGACCAGGGTGGTAACCATACGTCAGACAGGAGAAGGCAGATTTGACCAAGGTGGTAACCATACG
TCAAATTAGAATAAAAAGAATC
Found at i:326176 original size:48 final size:48
Alignment explanation
Indices: 326122--326278 Score: 226
Period size: 48 Copynumber: 3.3 Consensus size: 48
326112 AGGAAAAAGG
**
326122 AGAGTTTGACCAGGCCCTAACACCAATACAATCAAACAAGGGATGAAA
1 AGAGTTTGACCAGGCCCTAACACCAATACAATCAAATGAGGGATGAAA
* * * *
326170 AGAGTTTAACTAGGCCTTAACACCAATACAATCAAATGAGGGATAAAA
1 AGAGTTTGACCAGGCCCTAACACCAATACAATCAAATGAGGGATGAAA
* *
326218 ATAGTTTGACCAGGCCCTAACACCAATACAGTCAAATGAGGGATGAACA
1 AGAGTTTGACCAGGCCCTAACACCAATACAATCAAATGAGGGATGAA-A
326267 A-AGTTTGACCAG
1 AGAGTTTGACCAG
326279 ATACAGTCAA
Statistics
Matches: 96, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
48 94 0.98
49 2 0.02
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.18
Consensus pattern (48 bp):
AGAGTTTGACCAGGCCCTAACACCAATACAATCAAATGAGGGATGAAA
Found at i:326290 original size:36 final size:35
Alignment explanation
Indices: 326239--326308 Score: 122
Period size: 36 Copynumber: 2.0 Consensus size: 35
326229 AGGCCCTAAC
*
326239 ACCAATACAGTCAAATGAGGGATGAACAAAGTTTG
1 ACCAATACAGTCAAATGAGGGATGAAAAAAGTTTG
326274 ACCAGATACAGTCAAATGAGGGATGAAAAAAGTTT
1 ACCA-ATACAGTCAAATGAGGGATGAAAAAAGTTT
326309 AACTAAGCCC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 4 0.12
36 29 0.88
ACGTcount: A:0.44, C:0.13, G:0.23, T:0.20
Consensus pattern (35 bp):
ACCAATACAGTCAAATGAGGGATGAAAAAAGTTTG
Found at i:326336 original size:84 final size:83
Alignment explanation
Indices: 326191--326391 Score: 255
Period size: 84 Copynumber: 2.4 Consensus size: 83
326181 AGGCCTTAAC
* * *
326191 ACCA-ATACAATCAAATGAGGGAT-AAAAATAGTTTGACCAGGCCCTAACACCAATACAGTCAAA
1 ACCAGATACAGTCAAATGAGGGATGAAAAA-AGTTTAACCAAGCCCTAACACCAATACAGTCAAA
*
326254 TGAGGGAT-GAACAAAGTTTG
65 CGAGGG-TGGAA-AAAGTTTG
* *
326274 ACCAGATACAGTCAAATGAGGGATGAAAAAAGTTTAACTAAGCCCTAATACCAATACAGTCAAAC
1 ACCAGATACAGTCAAATGAGGGATGAAAAAAGTTTAACCAAGCCCTAACACCAATACAGTCAAAC
*
326339 GAGGGTGGAAAGAGTTTG
66 GAGGGTGGAAAAAGTTTG
* * * *
326357 ACCGGATATAGTTAAATGAGGGATGAAAAGAGTTT
1 ACCAGATACAGTCAAATGAGGGATGAAAAAAGTTT
326392 GACAAGATAT
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
83 43 0.41
84 56 0.54
85 5 0.05
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.20
Consensus pattern (83 bp):
ACCAGATACAGTCAAATGAGGGATGAAAAAAGTTTAACCAAGCCCTAACACCAATACAGTCAAAC
GAGGGTGGAAAAAGTTTG
Found at i:330656 original size:20 final size:19
Alignment explanation
Indices: 330631--330704 Score: 85
Period size: 20 Copynumber: 3.8 Consensus size: 19
330621 ACAAAAACAG
330631 AATGTATCGATACATTGACA
1 AATGTATCGATACATTGA-A
*
330651 AATGTATCGATACATTCATA
1 AATGTATCGATACATTGA-A
* * *
330671 CATTTATCGATGCATTGAA
1 AATGTATCGATACATTGAA
*
330690 AATGTATCAATACAT
1 AATGTATCGATACAT
330705 CTGGGTAAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
19 12 0.27
20 32 0.73
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.34
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:332458 original size:20 final size:20
Alignment explanation
Indices: 332421--332472 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
332411 ATGCAGCATT
332421 TCTTTATTTTCTCATCTTTCTTTA
1 TCTTT-TTTTCT--TCTTT-TTTA
*
332445 T-TTTTTTTCTTCTTTTTTC
1 TCTTTTTTTCTTCTTTTTTA
332464 TCTTTTTTT
1 TCTTTTTTT
332473 GCACTTTTCC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 4 0.15
20 12 0.46
22 6 0.23
23 3 0.12
24 1 0.04
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.77
Consensus pattern (20 bp):
TCTTTTTTTCTTCTTTTTTA
Found at i:333776 original size:20 final size:22
Alignment explanation
Indices: 333753--333806 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 22
333743 ACAATTCAAA
*
333753 GTATCGATACATTG-CA-ACAT
1 GTATCGATACATTGAAAGACAT
*
333773 GTATCGATACA-TGAAAGAGAT
1 GTATCGATACATTGAAAGACAT
333794 GTATCGATACATT
1 GTATCGATACATT
333807 TCTTGGCAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 2 0.07
20 12 0.41
21 14 0.48
22 1 0.03
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (22 bp):
GTATCGATACATTGAAAGACAT
Found at i:333862 original size:13 final size:13
Alignment explanation
Indices: 333844--333869 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
333834 TACACCAAGT
333844 ATGTATCGATACA
1 ATGTATCGATACA
333857 ATGTATCGATACA
1 ATGTATCGATACA
333870 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:336318 original size:19 final size:20
Alignment explanation
Indices: 336275--336325 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
336265 CACACCCAGA
* *
336275 TGTATCGATACTTATTGCTT
1 TGTATCGATACATATTGCAT
*
336295 TGTATCGATACATGTT-CAT
1 TGTATCGATACATATTGCAT
336314 TGTATCGATACA
1 TGTATCGATACA
336326 CACTAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATATTGCAT
Found at i:338031 original size:12 final size:12
Alignment explanation
Indices: 338016--338040 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
338006 TCAACCATCA
338016 AAGATGATGATG
1 AAGATGATGATG
338028 AAGATGATGATG
1 AAGATGATGATG
338040 A
1 A
338041 CGAAGTTGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.24
Consensus pattern (12 bp):
AAGATGATGATG
Found at i:342608 original size:33 final size:33
Alignment explanation
Indices: 342547--342616 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
342537 CAGATGTACT
* * *
342547 GATATTGCATTCTTAGAATTGATGCATTGTATC
1 GATATTACATTATTAGAATTGATACATTGTATC
* *
342580 GATATTACATTATTAGTATTTATACATTGTATC
1 GATATTACATTATTAGAATTGATACATTGTATC
342613 GATA
1 GATA
342617 CCGATACTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.31, C:0.10, G:0.14, T:0.44
Consensus pattern (33 bp):
GATATTACATTATTAGAATTGATACATTGTATC
Found at i:344459 original size:18 final size:17
Alignment explanation
Indices: 344426--344460 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
344416 TTTGAAAAAG
344426 GAAAAAAGGGGAGAGAT
1 GAAAAAAGGGGAGAGAT
*
344443 GAAAAGAGGGAGAGAGAT
1 GAAAAAAGGG-GAGAGAT
344461 TTTTTGTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.51, C:0.00, G:0.43, T:0.06
Consensus pattern (17 bp):
GAAAAAAGGGGAGAGAT
Found at i:345141 original size:13 final size:13
Alignment explanation
Indices: 345123--345149 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
345113 ACATAGGTAT
345123 TTGTATCGATACA
1 TTGTATCGATACA
345136 TTGTATCGATACA
1 TTGTATCGATACA
345149 T
1 T
345150 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:345263 original size:20 final size:20
Alignment explanation
Indices: 345216--345268 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
345206 AAACTCACAT
*
345216 TGTATCGATACATGAAGGAT
1 TGTATCGATACATGAAGGAA
* *
345236 TGTGTCGATACATG-GGGAAA
1 TGTATCGATACATGAAGG-AA
345256 TGTATCGATACAT
1 TGTATCGATACAT
345269 TGAGCCCAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.30
Consensus pattern (20 bp):
TGTATCGATACATGAAGGAA
Found at i:346371 original size:156 final size:153
Alignment explanation
Indices: 346083--346606 Score: 568
Period size: 156 Copynumber: 3.4 Consensus size: 153
346073 GTTGGTTCTA
* * * * *
346083 AGGGATACTTTCGACGTAAAAGTACTCGATACCCCTAAACGACTTAAAAAGGATTTTAAAAAGGG
1 AGGGATACCTTCGACGTAAAAGTGCCCGATACCCCTAAAAGACTTAAAAAGGATTAT-AAAAGGG
*
346148 ATGAACCTATCCTAAATATCTACCTTCGGCATAAAAGCTGATCTAGTGATGACCTAGGAGTTGGT
65 ATGAACCTATCCTAAATATCTACCTTCGGCATAAAAGCTGACCTAGTGATGACCTAGGA-TTGGT
*
346213 TCTAAAAAATTACAAAAATGCCTCT
129 TCTAAAAAATTACAAAAATACCTCT
* * *
346238 AGGAGATACCTTCGACGTAAAAGTGCCCGATACCCCTAAAAGTCCTAAAAAGGATTACAAAATGG
1 AGG-GATACCTTCGACGTAAAAGTGCCCGATACCCCTAAAAGACTTAAAAAGGATTATAAAA-GG
* * *
346303 GATGAACATATCCTAAATAT-TAACCTTCGGCATAAGAA-CTGACCTAGTGATGACCTATGACTC
64 GATGAACCTATCCTAAATATCT-ACCTTCGGCATAA-AAGCTGACCTAGTGATGACCTAGGA-TT
* * *
346366 AGTTCTAAAAAATTACCAAAATACACCTAT
126 GGTTCTAAAAAATTA-CAAAA-ATACCTCT
* * * * * * * * *
346396 AGGTATACCTTCGACATGAAAGTATCCCGATATCCCTAAAGGACTTAAAAATGATTATAGAAGAG
1 AGGGATACCTTCGACGTAAAAGT-GCCCGATACCCCTAAAAGACTTAAAAAGGATTATAAAAGGG
* * ** * * *
346461 ATGAACCTATCCAAAATATCTACCTTTGGCATAAAAGCAAACC-CGACGATGACGTAGGATTGGT
65 ATGAACCTATCCTAAATATCTACCTTCGGCATAAAAGCTGACCTAG-TGATGACCTAGGATTGGT
*
346525 TCTAAAAAAATTACGAAAATACCTCT
129 TCT-AAAAAATTACAAAAATACCTCT
** * * *
346551 AAGGGATACCTTCGACGTAAAAGTGCTTGATACCTCTCAAAGACTTAAAAGGGATT
1 -AGGGATACCTTCGACGTAAAAGTGCCCGATACCCCTAAAAGACTTAAAAAGGATT
346607 TATAGATGTG
Statistics
Matches: 302, Mismatches: 55, Indels: 24
0.79 0.14 0.06
Matches are distributed among these distances:
155 37 0.12
156 148 0.49
157 78 0.26
158 39 0.13
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.25
Consensus pattern (153 bp):
AGGGATACCTTCGACGTAAAAGTGCCCGATACCCCTAAAAGACTTAAAAAGGATTATAAAAGGGA
TGAACCTATCCTAAATATCTACCTTCGGCATAAAAGCTGACCTAGTGATGACCTAGGATTGGTTC
TAAAAAATTACAAAAATACCTCT
Found at i:348953 original size:166 final size:165
Alignment explanation
Indices: 348632--349353 Score: 563
Period size: 165 Copynumber: 4.4 Consensus size: 165
348622 TTCAATGACA
* ** * *
348632 ATGTTAGATGAATTTTAAAAATTTTAAACCAAGAAAAATCCCCCCGAAAAAATTTACGAAGAAGA
1 ATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCTCGAAAAAATTTACGAAGTAGA
* ** * * * * * *
348697 AAACTCGGT-TTCTAAAAAAAAAAGGAATTTC-AACAAAAAATCCAAAACTCATGAAAATGAATT
66 AAACACCATATT-TCAGAAAAATAGGAGTTTCAAAGAAAAAATCAAAAACTCATGAAAATG-ATT
* *
348760 AATTTTTGAAAA-ATAATTTAATATGAATCAAATAATG
129 AGTTTTTGAAAACA-AATTTAATATGAATCAAATAACG
** ** *
348797 ATGTTTGATGAATTTTAAAAATTGAAAACTGAGAAAAATCTTCTCGAAAAAATTTACGGAGTAGA
1 ATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCTCGAAAAAATTTACGAAGTAGA
*
348862 AAACACCATATTTCAGAAAAATAGGAGTTTCAAATAAAAAATCAAAAACTCATGAAAATGATTGA
66 AAACACCATATTTCAGAAAAATAGGAGTTTCAAAGAAAAAATCAAAAACTCATGAAAATGATT-A
*
348927 GTGTTTGAAAACAAATTTAATATGAATCAAATAACG
130 GTTTTTGAAAACAAATTTAATATGAATCAAATAACG
* * * *
348963 ATGTTTGATGAATTTTAAAAAATGAAAAACAAG-AAAATCCCCTC-AGAAAAATTTATGAAGTGG
1 ATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCTCGA-AAAAATTTACGAAGTAG
* * * * *
349026 AAAATATCGTATTTC-GAAAAAATTA-GAGTTTTAAGGAAAAAAT-AAAAA---ATG--AATGA-
65 AAAACACCATATTTCAG-AAAAA-TAGGAGTTTCAAAGAAAAAATCAAAAACTCATGAAAATGAT
* *** * *
349082 -A-TTTTTAAAAACTGGTTTAATATGAAAT-AAATGA-T
128 TAGTTTTTGAAAACAAATTTAATATG-AATCAAATAACG
* * * * *
349117 ATTATTTAATGAAATTTT-AAAATTAAAAACCAAGAAAAATCTCCTCGAAAAAATTTATGAAGTA
1 A-TGTTTGATG-AATTTTAAAAATTGAAAACCAAGAAAAATCCCCTCGAAAAAATTTACGAAGTA
** ** * * * *
349181 GAAAA-AAAAGTATTTTGGAAAAA-AAGAGATTTCAAGGAAAAATATTCAAAAATTTATGAAAAT
64 GAAAACACCA-TATTTCAGAAAAATAGGAG-TTTCAAAGAAAAA-A-TCAAAAACTCATGAAAAT
** * ** * *
349244 GAATGGGTTTTTGAGAATTAATTTAATATGAATTAAATAACA
125 G-ATTAGTTTTTGAAAACAAATTTAATATGAATCAAATAACG
* * * * *
349286 ATATTTGATGAATTTTAAAAA-TGAAAAACTAAGAAAAATCCTCTC-AAAACAATTTACGGAGAA
1 ATGTTTGATGAATTTTAAAAATTG-AAAACCAAGAAAAATCCCCTCGAAAA-AATTTACGAAGTA
349349 GAAAA
64 GAAAA
349354 TCTCGTAATT
Statistics
Matches: 452, Mismatches: 72, Indels: 63
0.77 0.12 0.11
Matches are distributed among these distances:
154 2 0.00
155 47 0.10
156 62 0.14
157 3 0.01
158 1 0.00
159 10 0.02
161 3 0.01
162 3 0.01
164 11 0.02
165 135 0.30
166 91 0.20
167 15 0.03
168 68 0.15
169 1 0.00
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.28
Consensus pattern (165 bp):
ATGTTTGATGAATTTTAAAAATTGAAAACCAAGAAAAATCCCCTCGAAAAAATTTACGAAGTAGA
AAACACCATATTTCAGAAAAATAGGAGTTTCAAAGAAAAAATCAAAAACTCATGAAAATGATTAG
TTTTTGAAAACAAATTTAATATGAATCAAATAACG
Found at i:349167 original size:321 final size:324
Alignment explanation
Indices: 348750--349341 Score: 756
Period size: 321 Copynumber: 1.8 Consensus size: 324
348740 AAAACTCATG
* * *
348750 AAAATGAATTAATTTTTGAAAAATAATTTAATATGAATCAAATAATGATGTTTGATGAATTTTAA
1 AAAATGAATGAATTTTTGAAAAATAATTTAATATGAATCAAATAATGATATTTAATGAATTTTAA
* ** * * **
348815 AAATTGAAAACTGAGAAAAATCTTCTCGAAAAAATTTACGGAGTAGAAAACACCA-TATTTCAGA
66 AAATTAAAAACCAAGAAAAATCTCCTCGAAAAAATTTACGAAGTAGAAAA-AAAAGTATTTCAGA
* * *
348879 AAAATAG-GAGTTTCAAATAAAAA-A-TCAAAAACTCATGAAAATGATTGAGTGTTTGAAAACAA
130 AAAAAAGAGA-TTTCAAAGAAAAATATTCAAAAACTCATGAAAATGAATGAGTGTTTGAAAACAA
* *
348941 ATTTAATATGAATCAAATAACGATGTTTGATGAATTTTAAAAAATGAAAAAC-AAG-AAAATCCC
194 ATTTAATATGAATCAAATAACAATATTTGATGAATTTT-AAAAATGAAAAACTAAGAAAAATCCC
349004 CTCAGAAA-AATTTATGAAGTGGAAAATATCGTATTTCGAAAAAATTAGAGTTTTAAGGAAAAAA
258 CTCA-AAACAATTTATGAAGTGGAAAATATCGTATTTCGAAAAAATTAGAGTTTTAAGGAAAAAA
349068 TAA
322 TAA
** *
349071 AAAATGAATGAATTTTT-AAAAACTGGTTTAATATGAAAT-AAATGAT-ATTATTTAATGAAATT
1 AAAATGAATGAATTTTTGAAAAA-TAATTTAATATG-AATCAAATAATGA-TATTTAATG-AATT
* *
349133 TT-AAAATTAAAAACCAAGAAAAATCTCCTCGAAAAAATTTATGAAGTAGAAAAAAAAGTATTTT
62 TTAAAAATTAAAAACCAAGAAAAATCTCCTCGAAAAAATTTACGAAGTAGAAAAAAAAGTATTTC
* * * * * * * *
349197 GGAAAAAAAGAGATTTCAAGGAAAAATATTCAAAAATTTATGAAAATGAATGGGTTTTTGAGAAT
127 AGAAAAAAAGAGATTTCAAAGAAAAATATTCAAAAACTCATGAAAATGAATGAGTGTTTGAAAAC
* *
349262 TAATTTAATATGAATTAAATAACAATATTTGATGAATTTTAAAAATGAAAAACTAAGAAAAATCC
192 AAATTTAATATGAATCAAATAACAATATTTGATGAATTTTAAAAATGAAAAACTAAGAAAAATCC
*
349327 TCTCAAAACAATTTA
257 CCTCAAAACAATTTA
349342 CGGAGAAGAA
Statistics
Matches: 229, Mismatches: 31, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
320 8 0.03
321 108 0.47
322 25 0.11
323 71 0.31
324 17 0.07
ACGTcount: A:0.51, C:0.07, G:0.12, T:0.30
Consensus pattern (324 bp):
AAAATGAATGAATTTTTGAAAAATAATTTAATATGAATCAAATAATGATATTTAATGAATTTTAA
AAATTAAAAACCAAGAAAAATCTCCTCGAAAAAATTTACGAAGTAGAAAAAAAAGTATTTCAGAA
AAAAAGAGATTTCAAAGAAAAATATTCAAAAACTCATGAAAATGAATGAGTGTTTGAAAACAAAT
TTAATATGAATCAAATAACAATATTTGATGAATTTTAAAAATGAAAAACTAAGAAAAATCCCCTC
AAAACAATTTATGAAGTGGAAAATATCGTATTTCGAAAAAATTAGAGTTTTAAGGAAAAAATAA
Found at i:351417 original size:20 final size:20
Alignment explanation
Indices: 351394--351439 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
351384 ACAATGTATT
**
351394 GATACATGACTAAATGCATC
1 GATACATGAAAAAATGCATC
* *
351414 GATACTTGAAAAAATGTATC
1 GATACATGAAAAAATGCATC
351434 GATACA
1 GATACA
351440 AGTCATTGGC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.26
Consensus pattern (20 bp):
GATACATGAAAAAATGCATC
Found at i:351509 original size:13 final size:13
Alignment explanation
Indices: 351491--351515 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
351481 ACACATAGTA
351491 TGTATCGATACAT
1 TGTATCGATACAT
351504 TGTATCGATACA
1 TGTATCGATACA
351516 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:351512 original size:32 final size:33
Alignment explanation
Indices: 351471--351538 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
351461 GTAGCTAAAC
**
351471 TTGTATCGATACA-CATAGTATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
351503 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCATAAAATGTATCGATACA
351536 TTG
1 TTG
351539 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATACA
Found at i:357707 original size:13 final size:13
Alignment explanation
Indices: 357689--357713 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
357679 CAGTATTCTC
357689 TGTATCGATACAT
1 TGTATCGATACAT
357702 TGTATCGATACA
1 TGTATCGATACA
357714 AGGGGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:359502 original size:19 final size:19
Alignment explanation
Indices: 359475--359512 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
359465 AATAAATTTT
*
359475 TATGGTTAAGGGGGAGAAA
1 TATGATTAAGGGGGAGAAA
*
359494 TATGATTAAGTGGGAGAAA
1 TATGATTAAGGGGGAGAAA
359513 GAAATGGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.37, T:0.24
Consensus pattern (19 bp):
TATGATTAAGGGGGAGAAA
Found at i:360115 original size:18 final size:19
Alignment explanation
Indices: 360094--360131 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
360084 AAGTATGTAG
360094 ACACT-TCATTGTATCGAT
1 ACACTATCATTGTATCGAT
*
360112 ACACTGATCTTTGTATCGAT
1 ACACT-ATCATTGTATCGAT
360132 GCATGCAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
20 12 0.71
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.39
Consensus pattern (19 bp):
ACACTATCATTGTATCGAT
Found at i:360181 original size:52 final size:52
Alignment explanation
Indices: 360123--360251 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
360113 CACTGATCTT
*
360123 TGTATCGATGCATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
360175 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
360227 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
360252 TCATATTTTG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:367943 original size:13 final size:13
Alignment explanation
Indices: 367925--367950 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
367915 CAATTTTTTG
367925 TGTATCGATACAT
1 TGTATCGATACAT
367938 TGTATCGATACAT
1 TGTATCGATACAT
367951 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:367965 original size:32 final size:33
Alignment explanation
Indices: 367905--367968 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
367895 TACAAGCCAA
** *
367905 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
367938 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
367969 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:368717 original size:36 final size:36
Alignment explanation
Indices: 368676--368748 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
368666 TTGTTAATAA
368676 TTCTCCCCCTTAATCAAGTAATTCATATCAAAAATT
1 TTCTCCCCCTTAATCAAGTAATTCATATCAAAAATT
*
368712 TTCTCCCCCTTAATCAAGTAATTCATATCAAAGATT
1 TTCTCCCCCTTAATCAAGTAATTCATATCAAAAATT
368748 T
1 T
368749 ATTTGCACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.34, C:0.25, G:0.04, T:0.37
Consensus pattern (36 bp):
TTCTCCCCCTTAATCAAGTAATTCATATCAAAAATT
Found at i:372311 original size:52 final size:52
Alignment explanation
Indices: 372226--372350 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
372216 ATATGAAAAG
* * *
372226 TTGCTTGCATGTATCGAGACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
372278 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
372330 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
372351 AAGATCAGTG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:372363 original size:52 final size:52
Alignment explanation
Indices: 372226--372370 Score: 195
Period size: 52 Copynumber: 2.8 Consensus size: 52
372216 ATATGAAAAG
* * *
372226 TTGCTTGCATGTATCGAGACATTTA-ATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TAAGATAGTGTATCGATACATCTGGGCAAAT
*** *
372278 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAAT
372330 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATAAGAT-AGTGTATCGATACA
372371 ATGTATCGAT
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
51 4 0.05
52 79 0.95
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATAAGATAGTGTATCGATACATCTGGGCAAAT
Found at i:372377 original size:13 final size:13
Alignment explanation
Indices: 372359--372383 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
372349 CAAAGATCAG
372359 TGTATCGATACAA
1 TGTATCGATACAA
372372 TGTATCGATACA
1 TGTATCGATACA
372384 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:372466 original size:13 final size:13
Alignment explanation
Indices: 372448--372472 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
372438 CAAAAAAATA
372448 TGTATCGATACAT
1 TGTATCGATACAT
372461 TGTATCGATACA
1 TGTATCGATACA
372473 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:372468 original size:33 final size:33
Alignment explanation
Indices: 372426--372492 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
372416 AGTAGCTTAA
372426 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
372459 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
372492 A
1 A
372493 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:376111 original size:15 final size:15
Alignment explanation
Indices: 376091--376121 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
376081 ATTTCGTTTG
*
376091 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
376106 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
376121 G
1 G
376122 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:377972 original size:21 final size:21
Alignment explanation
Indices: 377925--377969 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 21
377915 AAGTTTTCAT
377925 TTTTC-TTAGCTAACTCATTA
1 TTTTCATTAGCTAACTCATTA
*
377945 TTTTCATTAGCTAACTTCTTTA
1 TTTTCATTAGCTAAC-TCATTA
377967 TTT
1 TTT
377970 CATCTTGCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTTCATTAGCTAACTCATTA
Found at i:380934 original size:16 final size:16
Alignment explanation
Indices: 380897--380945 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
380887 CCTAATCTTC
**
380897 ACAAAAAAAAACGAACG
1 ACAAAAAAAAAC-AAAA
380914 A-AAAAAAAAACAAAA
1 ACAAAAAAAAACAAAA
*
380929 ACAAAAAAAAAGAAAA
1 ACAAAAAAAAACAAAA
380945 A
1 A
380946 AACCCCTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 3 0.11
16 24 0.86
17 1 0.04
ACGTcount: A:0.84, C:0.10, G:0.06, T:0.00
Consensus pattern (16 bp):
ACAAAAAAAAACAAAA
Found at i:380935 original size:18 final size:18
Alignment explanation
Indices: 380914--380948 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
380904 AAAACGAACG
*
380914 AAAAAAAAA-ACAAAAAC
1 AAAAAAAAAGAAAAAAAC
380931 AAAAAAAAAGAAAAAAAC
1 AAAAAAAAAGAAAAAAAC
380949 CCCTTTTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.89, C:0.09, G:0.03, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAGAAAAAAAC
Found at i:381947 original size:32 final size:32
Alignment explanation
Indices: 381911--382209 Score: 96
Period size: 34 Copynumber: 9.2 Consensus size: 32
381901 CCACGACTTA
*
381911 GTGGCATCCTTTTCTGCCAAGCCCACAACTAC
1 GTGGCATCCTTTTCTGCAAAGCCCACAACTAC
* * * *
381943 GTGGCA-CTCTTTTCCTTCTAAGTCCACGACTTA-
1 GTGGCATC-CTTTT-CTGCAAAGCCCACAAC-TAC
**
381976 GTGGCATCCTTTTCTGCAAAGCCGGCAACTAC
1 GTGGCATCCTTTTCTGCAAAGCCCACAACTAC
* * * * *
382008 GTGACA-CTCTTTTCCTTCTAAGTCCATAACT-C
1 GTGGCATC-CTTTT-CTGCAAAGCCCACAACTAC
* *
382040 TGTGGCA-CCATTT-T---AAGCCCACAACTCC
1 -GTGGCATCCTTTTCTGCAAAGCCCACAACTAC
* * * * *
382068 ATGGCACTCTTTTTCCTTCTAAGCCCACAACTCC
1 GTGGCA-TCCTTTT-CTGCAAAGCCCACAACTAC
* * * *
382102 GTGGCACTCTTTTTCCTTCTAAA-TCCACAACTCC
1 GTGGCA-TCCTTTT-CTGC-AAAGCCCACAACTAC
* * * * *
382136 GTGGCACTCTTTTTCCTTCTAAGCCCACACCTCC
1 GTGGCA-TCCTTTT-CTGCAAAGCCCACAACTAC
* * * * *
382170 GTGGCACTCTTTTTCCTTCTAAGTCCACAACTCC
1 GTGGCA-TCCTTTT-CTGCAAAGCCCACAACTAC
382204 GTGGCA
1 GTGGCA
382210 CCCGTTTAAG
Statistics
Matches: 217, Mismatches: 32, Indels: 34
0.77 0.11 0.12
Matches are distributed among these distances:
27 15 0.07
28 1 0.00
29 4 0.02
30 1 0.00
31 5 0.02
32 36 0.17
33 42 0.19
34 111 0.51
35 2 0.01
ACGTcount: A:0.20, C:0.35, G:0.14, T:0.31
Consensus pattern (32 bp):
GTGGCATCCTTTTCTGCAAAGCCCACAACTAC
Found at i:382005 original size:65 final size:66
Alignment explanation
Indices: 381897--382210 Score: 277
Period size: 68 Copynumber: 4.8 Consensus size: 66
381887 TACCTTCTTA
* *
381897 AAGTCCACGACTTAGTGGCATCCTTTTCTGCCAAGCCCACAACTACGTGGCACTC-TTTTCCTTC
1 AAGTCCACAACTTAGTGGCATCCTTTTCTGCAAAGCCCACAACTACGTGGCACTCTTTTTCCTTC
381961 T
66 T
* ** *
381962 AAGTCCACGACTTAGTGGCATCCTTTTCTGCAAAGCCGGCAACTACGTGACACTC-TTTTCCTTC
1 AAGTCCACAACTTAGTGGCATCCTTTTCTGCAAAGCCCACAACTACGTGGCACTCTTTTTCCTTC
382026 T
66 T
* * * *
382027 AAGTCCATAACTCT-GTGGCA-CCATTT-T---AAGCCCACAACTCCATGGCACTCTTTTTCCTT
1 AAGTCCACAACT-TAGTGGCATCCTTTTCTGCAAAGCCCACAACTACGTGGCACTCTTTTTCCTT
382086 CT
65 CT
* ** * * * *
382088 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAA-TCCACAACTCCGTGGCACTCTTTTTCC
1 AAGTCCACAACTTAGTGGCA-TCCTTTT-CTGC-AAAGCCCACAACTACGTGGCACTCTTTTTCC
382152 TTCT
63 TTCT
* * ** * * * * *
382156 AAGCCCACACCTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCAC
1 AAGTCCACAACTTAGTGGCA-TCCTTTT-CTGCAAAGCCCACAACTACGTGGCAC
382211 CCGTTTAAGC
Statistics
Matches: 216, Mismatches: 21, Indels: 21
0.84 0.08 0.08
Matches are distributed among these distances:
60 18 0.08
61 26 0.12
63 5 0.02
64 5 0.02
65 78 0.36
66 1 0.00
67 2 0.01
68 79 0.37
69 2 0.01
ACGTcount: A:0.21, C:0.35, G:0.14, T:0.31
Consensus pattern (66 bp):
AAGTCCACAACTTAGTGGCATCCTTTTCTGCAAAGCCCACAACTACGTGGCACTCTTTTTCCTTC
T
Found at i:382091 original size:34 final size:34
Alignment explanation
Indices: 382053--382434 Score: 394
Period size: 34 Copynumber: 11.8 Consensus size: 34
382043 GGCACCATTT
*
382053 TAAGCCCACAACTCCATGGCACTCTTTTTCCTTC
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
382087 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
**
382121 TAAATCCACAACTCCGTGGCACTCTTTTTCCTTC
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
*
382155 TAAGCCCACACCTCCGTGGCACTCTTTTTCCTTC
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
* *
382189 TAAGTCCACAACTCCGTGGCAC-C-----CGTT-
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
* * *
382216 TAAGCCCACAACTCCATGCCACACTTTTTCCTTC
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
* * *
382250 TAAGTCCACAACTCTGTGGCAC-C-----CGTT-
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
*
382277 TAAGCCCACAAACTCCGTGGCATTCTTTTTCCTTC
1 TAAGCCCAC-AACTCCGTGGCACTCTTTTTCCTTC
* *
382312 TAAGTCCACAACTCCGTGGCA--C-----CCTTT
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
382339 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
* * * *
382373 TAAGTCCACAACTTCGTGGCACTCTTTTCCCCTTT
1 TAAGCCCACAACTCCGTGGCACTCTTTT-TCCTTC
* *
382408 TAAAGTCCACAACCCCGTGGCAC-CTTT
1 T-AAGCCCACAACTCCGTGGCACTCTTT
382435 CCTTTTAAGT
Statistics
Matches: 292, Mismatches: 32, Indels: 47
0.79 0.09 0.13
Matches are distributed among these distances:
27 51 0.17
28 18 0.06
29 2 0.01
32 1 0.00
33 5 0.02
34 179 0.61
35 17 0.06
36 19 0.07
ACGTcount: A:0.20, C:0.37, G:0.12, T:0.31
Consensus pattern (34 bp):
TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
Found at i:382219 original size:27 final size:27
Alignment explanation
Indices: 382189--382360 Score: 121
Period size: 27 Copynumber: 5.8 Consensus size: 27
382179 TTTTTCCTTC
*
382189 TAAGTCCACAACTCCGTGGCACCCGTT
1 TAAGCCCACAACTCCGTGGCACCCGTT
* * *
382216 TAAGCCCACAACTCCATGCCACACTTTTTCCTT
1 TAAGCCCACAACTCCGTGGCAC-C-----CGTT
* *
382249 CTAAGTCCACAACTCTGTGGCACCCGTT
1 -TAAGCCCACAACTCCGTGGCACCCGTT
382277 TAAGCCCACAAACTCCGTGGCATTCTTTTTCC-TT
1 TAAGCCCAC-AACTCCGTGGCA--C-----CCGTT
* *
382311 CTAAGTCCACAACTCCGTGGCACCCTTT
1 -TAAGCCCACAACTCCGTGGCACCCGTT
382339 TAAGCCCACAACTCCGTGGCAC
1 TAAGCCCACAACTCCGTGGCAC
382361 TCTTTTTCCT
Statistics
Matches: 115, Mismatches: 13, Indels: 34
0.71 0.08 0.21
Matches are distributed among these distances:
27 50 0.43
28 17 0.15
30 1 0.01
32 1 0.01
33 4 0.03
34 32 0.28
35 10 0.09
ACGTcount: A:0.23, C:0.37, G:0.14, T:0.26
Consensus pattern (27 bp):
TAAGCCCACAACTCCGTGGCACCCGTT
Found at i:382220 original size:163 final size:161
Alignment explanation
Indices: 381929--382339 Score: 505
Period size: 163 Copynumber: 2.6 Consensus size: 161
381919 CTTTTCTGCC
* * ** * *
381929 AAGCCCACAACTACGTGGCACTCTTTTCCTTCTAAGTCCACGACTTAGTGGCATCCTTTT-CTGC
1 AAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGTCCACAACTCCGTGGCATCTTTTTCCTTC
* ** * * * * *
381993 AAAGCCGGCAACTACGTGACACTC-TTTTCCTTCTAAGTCCATAACTCTGTGGCACCATTTTAAG
66 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCAGTTTAAG
* *
382057 CCCACAACTCCATGGCACTCTTTTTCCTTCT
131 CCCACAACTCCATGCCACACTTTTTCCTTCT
*
382088 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAATCCACAACTCCGTGGCACTCTTTTTCCT
1 AAGCCCACAACTCCGTGGCACTC-TTTTCCTTCTAAGTCCACAACTCCGTGGCA-TCTTTTTCCT
* *
382153 TCTAAGCCCACACCTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTTTA
64 TCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCAGTTTA
382218 AGCCCACAACTCCATGCCACACTTTTTCCTTCT
129 AGCCCACAACTCCATGCCACACTTTTTCCTTCT
* * * *
382251 AAGTCCACAACTCTGTGGCAC-C----CGTT-TAAGCCCACAAACTCCGTGGCATTCTTTTTCCT
1 AAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGTCCAC-AACTCCGTGGCA-TCTTTTTCCT
* *
382310 TCTAAGTCCACAACTCCGTGGCACCCTTTT
64 TCTAAGCCCACAACTCCGTGGCACTCTTTT
382340 AAGCCCACAA
Statistics
Matches: 219, Mismatches: 28, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
156 7 0.03
157 52 0.24
159 22 0.10
160 26 0.12
161 6 0.03
162 22 0.10
163 84 0.38
ACGTcount: A:0.21, C:0.36, G:0.13, T:0.31
Consensus pattern (161 bp):
AAGCCCACAACTCCGTGGCACTCTTTTCCTTCTAAGTCCACAACTCCGTGGCATCTTTTTCCTTC
TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCAGTTTAAG
CCCACAACTCCATGCCACACTTTTTCCTTCT
Found at i:382335 original size:123 final size:125
Alignment explanation
Indices: 382087--382397 Score: 459
Period size: 123 Copynumber: 2.5 Consensus size: 125
382077 TTTTTCCTTC
* *
382087 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAATCCACAACTCCGTGGCACTCTTTTTCC
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACTC----TCC
*
382152 TTCTAAGCCCACACCTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTT
62 TTCTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTT
* * * *
382216 TAAGCCCACAACTCCATGCCACACTTTTTCCTTCTAAGTCCACAACTCTGTGGCAC-C-CGTT-T
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACTCTCCTTCT
* *
382278 AAGCCCACAAACTCCGTGGCATTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTT
66 AAGCCCAC-AACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTT
382339 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACT-TCGTGGCACTCT
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCT-GTGGCACTCT
382398 TTTCCCCTTT
Statistics
Matches: 166, Mismatches: 12, Indels: 12
0.87 0.06 0.06
Matches are distributed among these distances:
122 10 0.06
123 103 0.62
124 1 0.01
128 1 0.01
129 51 0.31
ACGTcount: A:0.20, C:0.37, G:0.13, T:0.30
Consensus pattern (125 bp):
TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACTCTCCTTCT
AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTT
Found at i:382400 original size:61 final size:61
Alignment explanation
Indices: 382155--382394 Score: 399
Period size: 61 Copynumber: 3.9 Consensus size: 61
382145 TTTTTCCTTC
*
382155 TAAGCCCACACCTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTT
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTT
* * * *
382216 TAAGCCCACAACTCCATGCCACACTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCCGTT
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTT
* *
382277 TAAGCCCACAAACTCCGTGGCATTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTT
1 TAAGCCCAC-AACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTT
*
382339 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTTCGTGGCAC
1 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCAC
382395 TCTTTTCCCC
Statistics
Matches: 165, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
61 110 0.67
62 55 0.33
ACGTcount: A:0.21, C:0.37, G:0.13, T:0.29
Consensus pattern (61 bp):
TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCGTT
Found at i:382415 original size:36 final size:34
Alignment explanation
Indices: 382333--382448 Score: 148
Period size: 34 Copynumber: 3.4 Consensus size: 34
382323 CTCCGTGGCA
*
382333 CCCTTTTAAGCCCACAACTCCGTGGCACTCTTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACTCTTTT
* * *
382367 TCCTTCTAAGTCCACAACTTCGTGGCACTCTTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACTCTTTT
*
382401 CCCCTTTTAAAGTCCACAACCCCGTGGCAC-C-TTT
1 -CCCTTTT-AAGTCCACAACTCCGTGGCACTCTTTT
382435 -CCTTTTAAGTCCAC
1 CCCTTTTAAGTCCAC
382449 GACACCTTGT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
31 8 0.11
32 6 0.08
34 33 0.46
35 6 0.08
36 19 0.26
ACGTcount: A:0.19, C:0.37, G:0.11, T:0.33
Consensus pattern (34 bp):
CCCTTTTAAGTCCACAACTCCGTGGCACTCTTTT
Found at i:382639 original size:43 final size:43
Alignment explanation
Indices: 382526--382941 Score: 400
Period size: 43 Copynumber: 9.1 Consensus size: 43
382516 GTGGCATCTT
* * * *
382526 CCTTTAAGTCCACTATCGCTAGCCTTGAATCAACATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * * *
382569 CCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAACACATTGGGA
1 -C-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
382618 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* * *
382661 CCTTCATCTTTAAGTCCATTGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
382710 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG--CA
* * ** *
382755 TTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCACCACGTTGGTA
1 --C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
* **
382802 GCTTTAAGTCCAATATCCCTGGCCTTGAATCAGCATATTGGCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC-A
* *
382846 CTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ---C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
*
382894 CCTTTAAATCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
382937 CCTTT
1 CCTTT
382942 TCCATCTTTA
Statistics
Matches: 308, Mismatches: 41, Indels: 47
0.78 0.10 0.12
Matches are distributed among these distances:
43 151 0.49
44 2 0.01
45 4 0.01
47 3 0.01
48 2 0.01
49 146 0.47
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
Found at i:382684 original size:92 final size:92
Alignment explanation
Indices: 382526--382988 Score: 719
Period size: 92 Copynumber: 5.0 Consensus size: 92
382516 GTGGCATCTT
* * * *
382526 CCTTTAAGTCCACTATCGCTAGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
* *
382591 AGCTGGCCTTGAATCAACACATTGGGA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
382618 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCATTGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
382683 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
382710 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
* * *
382775 AGCTGGCCTTGAATCACCACGTTGGTA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
382802 GCTTTAAGTCCAATATCCCTGGCCTTGAATCAGCATATTGGCAACTTCTTCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
382867 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
382894 CCTTTAAATCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTATGTTCAA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAA
*
382959 TGTAGCTGGCCTTGAATCAGTACATTGGCA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
382989 TTTTTTTTCT
Statistics
Matches: 339, Mismatches: 29, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
92 296 0.87
94 2 0.01
95 41 0.12
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:382940 original size:21 final size:21
Alignment explanation
Indices: 382873--382940 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
382863 ATGTAGCTGG
*
382873 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCATATTGGCA
* ** *
382894 CCTTTAAATCCAATATAGCTGG--
1 CC-TTGAAT-CAGCATA-TTGGCA
382916 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
382937 CCTT
1 CCTT
382941 TTCCATCTTT
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 3 0.09
20 5 0.15
21 11 0.33
22 7 0.21
23 4 0.12
24 3 0.09
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:383184 original size:43 final size:43
Alignment explanation
Indices: 383118--383575 Score: 502
Period size: 43 Copynumber: 10.1 Consensus size: 43
383108 GCACCTTTAT
* *
383118 CTTTTAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* **
383161 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATGTTGGCACC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C
* ** *
383205 TTTATCTTTAAGTCCAATGTAGCTCACCCTGAATCAGCACATTGGCAC
1 -----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
383253 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCTCTTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG------CAC
* *
383302 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
383345 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
* *
383392 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCACCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
383437 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGC-A---C
*
383484 TGCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
383529 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
383572 CTTT
1 CTTT
383576 TCCATCTTTA
Statistics
Matches: 350, Mismatches: 41, Indels: 48
0.80 0.09 0.11
Matches are distributed among these distances:
43 192 0.55
44 2 0.01
45 2 0.01
47 2 0.01
48 2 0.01
49 150 0.43
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:383226 original size:92 final size:92
Alignment explanation
Indices: 383069--383619 Score: 926
Period size: 92 Copynumber: 6.0 Consensus size: 92
383059 TCATCTTCAT
*
383069 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTTAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
383134 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
383161 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATGTTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
** *
383226 GCTCACCCTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
383253 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-TCTTTCATCTTTAAGTCCAATGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-ATCTTTAAGTCCAATGT
*
383317 AGCTGGCCTTGAATCAGCACATTGGTAC
65 AGCTGGCCTTGAATCAGCACATTGGCAC
*
383345 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
*
383410 GCTGGCCTTGAATCACCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
383437 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCT-GCTTTAAGTCCAATGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TATCTTTAAGTCCAATGT
383501 AGCTGGCCTTGAATCAGCACATTGGCAC
65 AGCTGGCCTTGAATCAGCACATTGGCAC
* *
383529 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTT--ATCTTTAAGTCCAAT
383594 GTAGCTGGCCTTGAATCAGCACATTG
63 GTAGCTGGCCTTGAATCAGCACATTG
383620 ACATCCATTT
Statistics
Matches: 429, Mismatches: 23, Indels: 11
0.93 0.05 0.02
Matches are distributed among these distances:
91 4 0.01
92 382 0.89
93 5 0.01
95 38 0.09
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:383658 original size:55 final size:52
Alignment explanation
Indices: 383529--383666 Score: 177
Period size: 52 Copynumber: 2.6 Consensus size: 52
383519 ACATTGGCAC
* *
383529 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
* *
383581 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCATTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACA-CC-TTTTC-CAT
* * * *
383636 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
383667 ACATATTGGC
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
52 38 0.52
53 2 0.03
54 5 0.07
55 28 0.38
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
Found at i:383709 original size:450 final size:447
Alignment explanation
Indices: 383253--384066 Score: 1380
Period size: 450 Copynumber: 1.8 Consensus size: 447
383243 ACATTGGCAC
* * * *
383253 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCTCTTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGAACATTGGCACCTTCATCTTTAAGTCCAATGTA
*
383318 GCTGGCCTTGAATCAGCACATTGGTACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
383383 GGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCACCACATTGGCACCTTTAAGTCCA
131 GGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCACCACATTGGCACCTTTAAGTCCA
383448 ATATCGCTGGCCTTGAATCAGCATATTGGCAACTTC-TGCTTTAAGTCCAATGTAGCTGGCCTTG
196 ATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCAT-CTTTAAGTCCAATGTAGCTGGCCTTG
* *
383512 AATCAGCACATTGGCACCTTTAAGTCCAATAT-AGCTGGCCTTGAATCAGCATATTGGCACCTTT
260 AATCACCACATTGGCACCTTTAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCAAC--T
*
383576 TCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCATTTTCTCATCTTTA
322 T-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCATTTTCTCATCTTTA
383641 AGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCAT
386 AGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCAT
* * *
383703 CTTTAAGTCCAATGTCGCTGGTCTTGAATCAGAACATTGGCACCTTCATCTTTAAGTCCAATGTC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGAACATTGGCACCTTCATCTTTAAGTCCAATGTA
*
383768 GCTGGCCTTGGATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
66 GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
* * *
383833 GGCTCCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTACCTTTAAGTCCA
131 GGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCACCACATTGGCACCTTTAAGTCCA
* * * *
383898 ATATCGTTTGCCTTGAATCAGTATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGA
196 ATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCATCTTTAAGTCCAATGTAGCTGGCCTTGA
* *
383963 ATCACCAGATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCAACTTCTT
261 ATCACCACATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCAACTTCAT
384028 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
326 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
384067 GCACCTTTAA
Statistics
Matches: 341, Mismatches: 21, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
447 40 0.12
448 2 0.01
450 297 0.87
451 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (447 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGAACATTGGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT
GGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCACCACATTGGCACCTTTAAGTCCA
ATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCATCTTTAAGTCCAATGTAGCTGGCCTTGA
ATCACCACATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCAACTTCAT
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCATTTTCTCATCTTTAAGCCC
AATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCAT
Found at i:383709 original size:542 final size:537
Alignment explanation
Indices: 382618--384240 Score: 2245
Period size: 542 Copynumber: 3.0 Consensus size: 537
382608 CACATTGGGA
*
382618 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCATTGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
382683 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * * *
382748 TGGCACATTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCACCACGTTGGTAGCTTTAAGTCC
131 TGGCTCATTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTACCTTTAAGTCC
* * *
382813 AATATCCCTGGCCTTGAATCAGCATATTGGCAACTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
196 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
* * * *
382878 AATCAGCACATTGGCACCTTTAAATCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTT
261 AATCACCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAAC--TT
* * *
382943 CCATCTTTATGTTCAATGTAGCTGGCCTTGAATCAGTACATTGGCATTTTTTTTCTCATCTTTAA
324 -C-TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----------C--CTTTAA
* * * *
383008 GCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTTCATCTTT
375 GTCCAATATAGTTGGCCTTGAATCAGCATATTGG---C---A-C-C--TT-T--TC--CATCTTT
* * * * * * * *
383073 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CC--TT-T-ATCTTTTAGTCCAATGT
425 AAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTCTCATCTTTAAGCCCAATAT
* * * **
383133 AGCTGGCCTTGAAT---C--A---G---C---A-CA---TTGGCA---
490 CGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCT
* *
383160 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATGTTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
** *
383225 AGCTCACCCTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
*
383290 TGGCTCTTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTACCTTTAAGTCC
131 TGGCTCATTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTACCTTTAAGTCC
383355 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
196 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
383420 AATCACCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCT
261 AATCACCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCT
*
383485 GCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGG
326 -CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGTTGG
383550 CCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCA
390 CCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCA
383615 CATTGACATCCATTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATC
455 CATTGACATCC-TTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATC
383680 TTTATCACTTTTCTCATCTT
519 TTTATCACTTTTCTCATC-T
* * * *
383700 CATCTTTAAGTCCAATGTCGCTGGTCTTGAATCAGAACATTGGCACCTTCATCTTTAAGTCCAAT
1 C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAAT
* *
383765 GTCGCTGGCCTTGGATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
64 GTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
*
383830 ATTGGCTCCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTACCTTTAAGT
129 ATTGGCTCATTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTACCTTTAAGT
* * *
383895 CCAATATCGTTTGCCTTGAATCAGTATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
194 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
* *
383960 TGAATCACCAGATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCAACTT
259 TGAATCACCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTT
384025 CTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGTT
324 C-TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGTT
*
384090 GGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATTAG
388 GGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAG
384155 CACATTGACATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCA
453 CACATTGACATCC-TTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCA
*
384220 TATTTATCACTTTTCTCATCT
517 TCTTTATCACTTTTCTCATCT
384241 GTCTTTACCA
Statistics
Matches: 989, Mismatches: 60, Indels: 65
0.89 0.05 0.06
Matches are distributed among these distances:
512 40 0.04
513 2 0.00
514 2 0.00
516 3 0.00
517 3 0.00
518 25 0.03
519 1 0.00
520 1 0.00
521 2 0.00
523 1 0.00
524 1 0.00
526 1 0.00
527 35 0.04
529 2 0.00
532 1 0.00
533 2 0.00
536 4 0.00
538 1 0.00
539 40 0.04
540 3 0.00
541 1 0.00
542 817 0.83
543 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (537 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
TGGCTCATTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTACCTTTAAGTCC
AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
AATCACCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCT
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGTTGGC
CTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCAC
ATTGACATCCTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTT
TATCACTTTTCTCATCT
Found at i:383734 original size:634 final size:633
Alignment explanation
Indices: 382526--384170 Score: 2768
Period size: 634 Copynumber: 2.6 Consensus size: 633
382516 GTGGCATCTT
* * *
382526 CCTTTAAGTCCACTATCGCTAGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
* *
382591 AGCTGGCCTTGAATCAACACATTGGGACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
*
382656 TGGCACCTTCATCTTTAAGTCCATTGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
131 TGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
*
382721 AATATCGCTGGCCTTGAATCAGCATATTGGCACATTCATCTTTAAGTCCAATGTAGCTGGCCTTG
196 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
* * * *
382786 AATCACCACGTTGGTAGCTTTAAGTCCAATATCCCTGGCCTTGAATCAGCATATTGGCAACTTCT
261 AATCACCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTC-
382851 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAATCCAATATAGCTGG
325 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAATCCAATATAGCTGG
* *
382916 CCTTGAATCAGCATATTGGCACCTTTTCCATCTTTATGTTCAATGTAGCTGGCCTTGAATCAGTA
390 CCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCA
* ***
382981 CATTGGCATTTTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATC
455 CATTGACATCCATTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATC
* *
383046 TTTATCACTTTTCTCATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
520 TTTATCACTTTTCTCATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGAACATTGGCA
* *
383111 CCTTTATCTTTTAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
585 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
*
383160 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATGTTGGCACCTTTATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
** *
383225 AGCTCACCCTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* * *
383290 TGGCTCTTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTACCTTTAAGTCC
131 TGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
383355 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
196 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
383420 AATCACCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCT
261 AATCACCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCT
*
383485 GCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGG
326 -CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAATCCAATATAGCTGG
383550 CCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCA
390 CCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCA
383615 CATTGACATCCATTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATC
455 CATTGACATCCATTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATC
* *
383680 TTTATCACTTTTCTCATCTTCATCTTTAAGTCCAATGTCGCTGGTCTTGAATCAGAACATTGGCA
520 TTTATCACTTTTCTCATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGAACATTGGCA
* *
383745 CCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGGATCAGCACATTGGCA
585 CCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
* *
383794 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCTCCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
* * * *
383859 AGCTGGCCTTGAATCAGCACATTGGTACCTTTAAGTCCAATATCGTTTGCCTTGAATCAGTATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
* *
383924 TGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCACCAGATTGGCACCTTTAAGTCC
131 TGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
* * *
383989 AATATCACTGGCCTTGAATCAGCATATTGGCAACTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
196 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
* * * *
384054 AATCAGCACATTGGCACCTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTT
261 AATCACCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAAC--TT
* * *
384119 CCATCTTTAAGTTCAATGTAGCTGGCCTTGAATTAGCACATTGACATCCTTT
324 -C-TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
384171 TTCTCATCTT
Statistics
Matches: 947, Mismatches: 58, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
633 1 0.00
634 898 0.95
636 2 0.00
637 40 0.04
638 6 0.01
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (633 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
TGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCC
AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
AATCACCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAACTTCT
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAATCCAATATAGCTGGC
CTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCAC
ATTGACATCCATTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCT
TTATCACTTTTCTCATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGAACATTGGCAC
CTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
Found at i:383799 original size:116 final size:119
Alignment explanation
Indices: 383578--383799 Score: 279
Period size: 116 Copynumber: 1.9 Consensus size: 119
383568 GCACCTTTTC
* *
383578 CATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCATTTTCTCATCTTTAAG
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGAACATTGACATCC---TTCTCATCTTTAAG
* * *
383643 CCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCATCTT
63 CCCAATATCGCTGGCCGTGAATCAACACATTGGCACCTTTATCACTTTTCTCATCTT
* * * *
383700 CATCTTTAAGTCCAATGTCGCTGGTCTTGAATCAGAACATTGGCA-CC-T-TCATCTTTAAGTCC
1 CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGAACATTGACATCCTTCTCATCTTTAAGCCC
* * * *
383762 AATGTCGCTGGCCTTGGATCAGCACATTGGCACCTTTA
66 AATATCGCTGGCCGTGAATCAACACATTGGCACCTTTA
383800 AGTCCAATAT
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
116 44 0.51
117 1 0.01
121 2 0.02
122 40 0.46
ACGTcount: A:0.24, C:0.25, G:0.16, T:0.35
Consensus pattern (119 bp):
CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGAACATTGACATCCTTCTCATCTTTAAGCCC
AATATCGCTGGCCGTGAATCAACACATTGGCACCTTTATCACTTTTCTCATCTT
Found at i:383813 original size:43 final size:43
Alignment explanation
Indices: 383752--384117 Score: 383
Period size: 43 Copynumber: 8.1 Consensus size: 43
383742 GCACCTTCAT
* * * *
383752 CTTTAAGTCCAATGTCGCTGGCCTTGGATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
* *
383795 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCTCCTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG------CAC
* * *
383844 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGTAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
* * * *
383887 CTTTAAGTCCAATATCGTTTGCCTTGAATCAGTATATTGGCACCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA----C
* * *
383934 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCACCAGATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
383979 CTTTAAGTCCAATATCA-CTGGCCTTGAATCAGCATATTGGCAACTTC
1 CTTTAAGTCCAATAT-AGCTGGCCTTGAATCAGCATATTGGC-A---C
* *
384026 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
*
384071 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
384114 CTTT
1 CTTT
384118 TCCATCTTTA
Statistics
Matches: 272, Mismatches: 31, Indels: 40
0.79 0.09 0.12
Matches are distributed among these distances:
43 153 0.56
44 2 0.01
45 2 0.01
47 2 0.01
48 2 0.01
49 111 0.41
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.33
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
Found at i:383864 original size:92 final size:92
Alignment explanation
Indices: 383703--384170 Score: 711
Period size: 92 Copynumber: 5.0 Consensus size: 92
383693 TCATCTTCAT
* * * * *
383703 CTTTAAGTCCAATGTCGCTGGTCTTGAATCAGAACATTGGCACCTTCATCTTTAAGTCCAATGTC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
383768 GCTGGCCTTGGATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
*
383795 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCTCCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
383860 GCTGGCCTTGAATCAGCACATTGGTAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
383887 CTTTAAGTCCAATATCGTTTGCCTTGAATCAGTATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
* *
383952 GCTGGCCTTGAATCACCAGATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
383979 CTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCAACTTCTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
384044 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * *
384071 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAAT
* *
384136 GTAGCTGGCCTTGAATTAGCACATTGACATC
63 GTAGCTGGCCTTGAATCAGCACATTGGCA-C
384167 CTTT
1 CTTT
384171 TTCTCATCTT
Statistics
Matches: 341, Mismatches: 31, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
92 293 0.86
94 2 0.01
95 41 0.12
96 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:384073 original size:21 final size:21
Alignment explanation
Indices: 384049--384116 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
384039 ATGTAGCTGG
*
384049 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCATATTGGCA
* **
384070 CCTTTAAGTCCAATATAGTTGG--
1 CCTTGAA-T-CAGCATA-TTGGCA
384092 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
384113 CCTT
1 CCTT
384117 TTCCATCTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
19 4 0.11
20 5 0.14
21 11 0.31
22 7 0.20
23 4 0.11
24 4 0.11
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:384200 original size:55 final size:52
Alignment explanation
Indices: 384071--384208 Score: 168
Period size: 52 Copynumber: 2.6 Consensus size: 52
384061 ACATTGGCAC
* *
384071 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
* * * *
384123 CTTTAAGTTCAATGTAGCTGGCCTTGAATTAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCACATTGACA-CC-TTTTC-CAT
* * *
384178 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGTTGGCCTTGAATCA
384209 ACATATTGGC
Statistics
Matches: 70, Mismatches: 13, Indels: 3
0.81 0.15 0.03
Matches are distributed among these distances:
52 36 0.51
53 2 0.03
54 5 0.07
55 27 0.39
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGTTGGCCTTGAATCAGCACATTGACACCTTTTCCAT
Found at i:394555 original size:18 final size:17
Alignment explanation
Indices: 394530--394628 Score: 74
Period size: 18 Copynumber: 5.5 Consensus size: 17
394520 TATATAAAAA
*
394530 GAAAAAACAACAACAAC
1 GAAAAAAAAACAACAAC
* *
394547 GACAAAAACAA-AACAAT
1 GA-AAAAAAAACAACAAC
*
394564 GAAAAAAAAATAACACAC
1 GAAAAAAAAACAACA-AC
* *
394582 CAAAAAAAAACAACAAAAAA
1 GAAAAAAAAACAAC---AAC
394602 GAAAAAAAAACAACAAAC
1 GAAAAAAAAACAAC-AAC
*
394620 CAAAAAAAA
1 GAAAAAAAA
394629 TGGGTTCAGA
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
16 7 0.10
17 13 0.19
18 32 0.48
20 14 0.21
21 1 0.01
ACGTcount: A:0.77, C:0.17, G:0.04, T:0.02
Consensus pattern (17 bp):
GAAAAAAAAACAACAAC
Found at i:394606 original size:17 final size:17
Alignment explanation
Indices: 394525--394614 Score: 58
Period size: 17 Copynumber: 5.1 Consensus size: 17
394515 TCATATATAT
394525 AAAAAGAAAAAACAACA
1 AAAAAGAAAAAACAACA
* *
394542 ACAACGACAAAAACAAAACA
1 AAAAAGA-AAAAAC--AACA
*
394562 ATGAAAAAAAAATAAC-ACA
1 A--AAAAGAAAA-AACAACA
**
394581 CCAAA-AAAAAACAACA
1 AAAAAGAAAAAACAACA
*
394597 AAAAAGAAAAAAAAACA
1 AAAAAGAAAAAACAACA
394614 A
1 A
394615 CAAACCAAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
15 3 0.05
16 10 0.18
17 19 0.35
18 6 0.11
19 3 0.05
20 5 0.09
21 3 0.05
22 6 0.11
ACGTcount: A:0.78, C:0.16, G:0.04, T:0.02
Consensus pattern (17 bp):
AAAAAGAAAAAACAACA
Found at i:394606 original size:38 final size:40
Alignment explanation
Indices: 394553--394628 Score: 120
Period size: 38 Copynumber: 1.9 Consensus size: 40
394543 CAACGACAAA
* *
394553 AACAAAACAATGAAAAAAAAATAACACACCAAAAAAAAAC
1 AACAAAACAATGAAAAAAAAACAACAAACCAAAAAAAAAC
394593 AACAAAA-AA-GAAAAAAAAACAACAAACCAAAAAAAA
1 AACAAAACAATGAAAAAAAAACAACAAACCAAAAAAAA
394629 TGGGTTCAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 25 0.74
39 2 0.06
40 7 0.21
ACGTcount: A:0.79, C:0.16, G:0.03, T:0.03
Consensus pattern (40 bp):
AACAAAACAATGAAAAAAAAACAACAAACCAAAAAAAAAC
Found at i:394626 original size:20 final size:20
Alignment explanation
Indices: 394565--394628 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
394555 CAAAACAATG
* *
394565 AAAAAAAAATAACACACCAA
1 AAAAAAAAACAACAAACCAA
*
394585 AAAAAAACAACAA-AAA--AG
1 AAAAAAA-AACAACAAACCAA
394603 AAAAAAAAACAACAAACCAA
1 AAAAAAAAACAACAAACCAA
394623 AAAAAA
1 AAAAAA
394629 TGGGTTCAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
17 5 0.14
18 11 0.31
20 16 0.44
21 4 0.11
ACGTcount: A:0.81, C:0.16, G:0.02, T:0.02
Consensus pattern (20 bp):
AAAAAAAAACAACAAACCAA
Found at i:395605 original size:28 final size:27
Alignment explanation
Indices: 395574--395650 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 27
395564 CAATCTTTAA
*
395574 TGGAATCAAGAAAAGTGCCAATCCCCAT
1 TGGAATCAAGAAAAGTG-CAATCCCCAG
* *
395602 TGGAATCAGGACAAATTGCAATCCCCAG
1 TGGAATCAAGA-AAAGTGCAATCCCCAG
* * *
395630 TAGAATTAAGAAAATTGCAAT
1 TGGAATCAAGAAAAGTGCAAT
395651 GGCTGTGGTC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
27 10 0.24
28 27 0.64
29 5 0.12
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Consensus pattern (27 bp):
TGGAATCAAGAAAAGTGCAATCCCCAG
Found at i:396198 original size:33 final size:33
Alignment explanation
Indices: 396161--396239 Score: 122
Period size: 33 Copynumber: 2.4 Consensus size: 33
396151 TCATCCTTTT
*
396161 AAGCCTACACAAGTTGCTGGCAACCTTTCTCAA
1 AAGCCCACACAAGTTGCTGGCAACCTTTCTCAA
* * *
396194 AAGCCCACACAAGTTGGTGGCATCCTTTCTTAA
1 AAGCCCACACAAGTTGCTGGCAACCTTTCTCAA
396227 AAGCCCACACAAG
1 AAGCCCACACAAG
396240 CCGGTGGCAT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (33 bp):
AAGCCCACACAAGTTGCTGGCAACCTTTCTCAA
Found at i:396246 original size:33 final size:33
Alignment explanation
Indices: 396178--396269 Score: 121
Period size: 33 Copynumber: 2.8 Consensus size: 33
396168 CACAAGTTGC
* * **
396178 TGGCAACCTTTCTCAAAAGCCCACACAAGTTGG
1 TGGCATCCTTTCTTAAAAGCCCACACAAGCCGG
396211 TGGCATCCTTTCTTAAAAGCCCACACAAGCCGG
1 TGGCATCCTTTCTTAAAAGCCCACACAAGCCGG
* *
396244 TGGCATCATTTCTTTCAAAGCCCACA
1 TGGCATCCTTTC-TTAAAAGCCCACA
396270 ACTCCATCGC
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 40 0.77
34 12 0.23
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (33 bp):
TGGCATCCTTTCTTAAAAGCCCACACAAGCCGG
Found at i:396367 original size:33 final size:34
Alignment explanation
Indices: 396324--396412 Score: 110
Period size: 33 Copynumber: 2.6 Consensus size: 34
396314 TCATCCTCTT
*
396324 AAGCCCACACAAGTTCGTGGCATCTTTTC-TGAA
1 AAGCCCACACAAGTTCGTGGCATCCTTTCTTGAA
* **
396357 AAGCCGACACAAG-TCGGTGGCATCCTTTCTTTCA
1 AAGCCCACACAAGTTC-GTGGCATCCTTTCTTGAA
*
396391 AAGCCCACACAAGTTGGTGGCA
1 AAGCCCACACAAGTTCGTGGCA
396413 ACCCTCTCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 5
0.81 0.10 0.09
Matches are distributed among these distances:
32 2 0.04
33 24 0.51
34 20 0.43
35 1 0.02
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (34 bp):
AAGCCCACACAAGTTCGTGGCATCCTTTCTTGAA
Found at i:396520 original size:56 final size:57
Alignment explanation
Indices: 396453--396609 Score: 194
Period size: 56 Copynumber: 2.7 Consensus size: 57
396443 CATCTCCTTC
396453 TAAGCCCAATGTCATTGGCCTTGAATCAACACATTGGTAA-TTGTCAAATC-TTTTTT
1 TAAGCCCAATGTCATTGGCCTTGAATCAACACATTGG-AACTTGTCAAATCTTTTTTT
* * * *
396509 TAAGCCCAATGT-AGTCGGCCTTAAATCAATACATTAGAACTTGTCAAATCTTTTTTTTT
1 TAAGCCCAATGTCA-TTGGCCTTGAATCAACACATTGGAACTTGTCAAATC--TTTTTTT
* *
396568 TAAGCCCAATATCATTGGCCTTGAATCAGCACATTGGCAACT
1 TAAGCCCAATGTCATTGGCCTTGAATCAACACATTGG-AACT
396610 ATTATCTTTA
Statistics
Matches: 84, Mismatches: 10, Indels: 10
0.81 0.10 0.10
Matches are distributed among these distances:
55 3 0.04
56 41 0.49
59 35 0.42
60 5 0.06
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.35
Consensus pattern (57 bp):
TAAGCCCAATGTCATTGGCCTTGAATCAACACATTGGAACTTGTCAAATCTTTTTTT
Found at i:396741 original size:52 final size:52
Alignment explanation
Indices: 396583--396867 Score: 225
Period size: 52 Copynumber: 5.5 Consensus size: 52
396573 CCAATATCAT
* * * * * *
396583 TGGCCTTGAATCAGCACATTGGCAAC--TATTATCTTTAAGTTCGATATTGC
1 TGGCCTTGAATCAGCACATTGGCATCTTTATCATCTTTAAGTCCAATGTCGC
* ** * * * * * *
396633 TGGCCTTAAATCAATATATTGGCATCCTTATCATCTTTGAGTCTAATGTTGT
1 TGGCCTTGAATCAGCACATTGGCATCTTTATCATCTTTAAGTCCAATGTCGC
* * *
396685 TGGCCTTGAATCAGCACATTGGCATCTTTGTCATCTTTAAGTCCGATATCGC
1 TGGCCTTGAATCAGCACATTGGCATCTTTATCATCTTTAAGTCCAATGTCGC
** * *
396737 TGGCCTTGAATCAGCATTTTGGCAATTCTATTACCATGTTTAAGTCCAATGTCGC
1 TGGCCTTGAATCAGCACATTGGC-A-TCT-TTATCATCTTTAAGTCCAATGTCGC
*** * * * **
396792 CAACCTTGAATTAGCACATTGGCAT-TCTTCTCATCTTCAAGTCCAATGTCAT
1 TGGCCTTGAATCAGCACATTGGCATCT-TTATCATCTTTAAGTCCAATGTCGC
* *
396844 TGGCCTTAAATCAGCTCATTGGCA
1 TGGCCTTGAATCAGCACATTGGCA
396868 CCCTTCTCAT
Statistics
Matches: 180, Mismatches: 50, Indels: 8
0.76 0.21 0.03
Matches are distributed among these distances:
50 21 0.12
52 116 0.64
53 2 0.01
54 4 0.02
55 37 0.21
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (52 bp):
TGGCCTTGAATCAGCACATTGGCATCTTTATCATCTTTAAGTCCAATGTCGC
Found at i:396814 original size:55 final size:53
Alignment explanation
Indices: 396688--396838 Score: 146
Period size: 55 Copynumber: 2.8 Consensus size: 53
396678 ATGTTGTTGG
** * ***
396688 CCTTGAATCAGCACATTGGCA-TCTTTGTCATCTTTAAGTCCGATATCGCTGG
1 CCTTGAATCAGCACATTGGCATTCTTTACCATCTTTAAGTCCAATATCGCCAA
** * *
396740 CCTTGAATCAGCATTTTGGCAATTCTATTACCATGTTTAAGTCCAATGTCGCCAA
1 CCTTGAATCAGCACATTGGC-ATTCT-TTACCATCTTTAAGTCCAATATCGCCAA
* *
396795 CCTTGAATTAGCACATTGGCATTC-TT-CTCATCTTCAAGTCCAAT
1 CCTTGAATCAGCACATTGGCATTCTTTAC-CATCTTTAAGTCCAAT
396839 GTCATTGGCC
Statistics
Matches: 80, Mismatches: 15, Indels: 8
0.78 0.15 0.08
Matches are distributed among these distances:
51 1 0.01
52 34 0.43
53 1 0.01
54 7 0.09
55 37 0.46
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (53 bp):
CCTTGAATCAGCACATTGGCATTCTTTACCATCTTTAAGTCCAATATCGCCAA
Found at i:402830 original size:78 final size:79
Alignment explanation
Indices: 402643--402940 Score: 384
Period size: 79 Copynumber: 3.8 Consensus size: 79
402633 GGCAAATCGA
* ** *
402643 TGTTTTAGAAATAAAATCAGGGTTGAAGTATCTGCTCTG-AAATAACGGGGTTGGAGTATCCCCG
1 TGTTTTGGAAATAAAATCAGGGTTGAAGTATCCCCTC-GAAAATAACGAGGTTGGAGTATCCCCG
*
402707 ATTGTGAAAAATCAG
65 ATTGTGAAAAATTAG
* * * *
402722 TATTTTGGAAATAAAATCAGGGTTGGAGTATCCCCTCGAAAATAACGAGGTTGAAGTAT-CTCGA
1 TGTTTTGGAAATAAAATCAGGGTTGAAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGA
*
402786 TTGTGAAAAATTGG
66 TTGTGAAAAATTAG
* * * * ** *
402800 TGTTTCGGAAAGAAGACCAGGGTTGAAGTATCCTGTCAAAAATAACGAGGTTGGAGTATCCCCGA
1 TGTTTTGGAAATAAAATCAGGGTTGAAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGA
402865 TTGTGAAAAATTAG
66 TTGTGAAAAATTAG
* * * *
402879 TGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCGGAAATAGCGAGGTTGGAGTATCCC
1 TGTTTTGGAAATAAAATCAGGGTTGAAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCC
402941 TTTAAAAATA
Statistics
Matches: 184, Mismatches: 33, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
78 66 0.36
79 118 0.64
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (79 bp):
TGTTTTGGAAATAAAATCAGGGTTGAAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGA
TTGTGAAAAATTAG
Found at i:402948 original size:107 final size:108
Alignment explanation
Indices: 402820--403047 Score: 277
Period size: 107 Copynumber: 2.1 Consensus size: 108
402810 AGAAGACCAG
* *
402820 GGTTGAAGTAT-CCTGTCAAAAATAACGA-GGTTGGAGTATCCCCGATTGTGAAAAATTAG-TGT
1 GGTTGGAGTATCCCTGTCAAAAATAA-GAGGGTTGGAGTATCCCCGATTATGAAAAATT-GTTGT
* * * * * *
402882 TTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCGGAAA-TAGCGA
64 TGTGGAAATAAAACCAGGGTTAGAGTATCCCCT-GAAAAGTAACGA
* * *
402927 GGTTGGAGTATCCCT-TTAAAAATAATAGGGTTGGAGTATCCCCGATTATGGAAAATTGTTGTTG
1 GGTTGGAGTATCCCTGTCAAAAATAAGAGGGTTGGAGTATCCCCGATTATGAAAAATTGTTGTTG
*
402991 TGGAAATAAAACCAGGGTTAGAGTATCCCCTTAAAAGTAACGA
66 TGGAAATAAAACCAGGGTTAGAGTATCCCCTGAAAAGTAACGA
*
403034 GGTTGGAGCATCCC
1 GGTTGGAGTATCCC
403048 CGATTGTGAA
Statistics
Matches: 104, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
106 5 0.05
107 96 0.92
108 3 0.03
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (108 bp):
GGTTGGAGTATCCCTGTCAAAAATAAGAGGGTTGGAGTATCCCCGATTATGAAAAATTGTTGTTG
TGGAAATAAAACCAGGGTTAGAGTATCCCCTGAAAAGTAACGA
Found at i:402949 original size:28 final size:28
Alignment explanation
Indices: 402898--402969 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 28
402888 AATAAAATCG
** *
402898 GGGTTGGAGTATCCCCTCGGAAAT-AGC
1 GGGTTGGAGTATCCCCTCAAAAATAAGA
* * *
402925 GAGGTTGGAGTATCCCTTTAAAAATAATA
1 G-GGTTGGAGTATCCCCTCAAAAATAAGA
402954 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
402970 GATTATGGAA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
27 1 0.03
28 33 0.92
29 2 0.06
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (28 bp):
GGGTTGGAGTATCCCCTCAAAAATAAGA
Found at i:403015 original size:79 final size:78
Alignment explanation
Indices: 402927--403125 Score: 227
Period size: 79 Copynumber: 2.5 Consensus size: 78
402917 GAAATAGCGA
* * * *
402927 GGTTGGAGTATCCCTTTAAAAATAATAGGGTTGGAGTATCCCCGATTATGGAAAATTGTTGTTGT
1 GGTTAGAGTATCCCCTTAAAAATAA-AGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTGT
*
402992 GGAAATAAAACCAG
65 GAAAATAAAACCAG
* * * * *
403006 GGTTAGAGTATCCCCTTAAAAGTAACGAGGTTGGAGCATCCCCGATTGTGAAAAATTGATGTTTT
1 GGTTAGAGTATCCCCTTAAAAATAAAG-GGTTGGAGTATCCCCGATTATGAAAAATTGATGTTGT
* *
403071 GAAAATAAAATCGG
65 GAAAATAAAACCAG
** * *
403085 GGTTAGAGTATCCCCTCGAAAATAACGGGGTTAGAGTATCC
1 GGTTAGAGTATCCCCTTAAAAATAA-AGGGTTGGAGTATCC
403126 TCTCAAAAAT
Statistics
Matches: 100, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
78 1 0.01
79 98 0.98
80 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (78 bp):
GGTTAGAGTATCCCCTTAAAAATAAAGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTGTG
AAAATAAAACCAG
Found at i:403055 original size:186 final size:186
Alignment explanation
Indices: 402742--403189 Score: 575
Period size: 186 Copynumber: 2.4 Consensus size: 186
402732 ATAAAATCAG
* * * * *
402742 GGTTGGAGTATCCCCTCGAAAATAA-CGAGGTTGAAGTAT-CTCGATTGTGAAAAATTGGTGTT-
1 GGTTGGAGTATCCCTTCAAAAATAATAG-GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTG
* * ** *
402804 TCGGAAAGAAGACCAGGGTTGAAGTATCCTGTCAAAAATAACGAGGTTGGAGTATCCCCGATTGT
65 T-GGAAATAAAACCAGGGTTGAAGTATCCCCTCAAAAATAACGAGGTTGGAGCATCCCCGATTGT
* * * *
402869 GAAAAATT-AGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCTCGGAAATAGCGA
129 GAAAAATTGA-TGTTTTGAAAATAAAATCGGGGTTAGAGTATCCCCTCGAAAATAACGA
* * * *
402927 GGTTGGAGTATCCCTTTAAAAATAATAGGGTTGGAGTATCCCCGATTATGGAAAATTGTTGTTGT
1 GGTTGGAGTATCCCTTCAAAAATAATAGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTGT
* *
402992 GGAAATAAAACCAGGGTT-AGAGTATCCCCTTAAAAGTAACGAGGTTGGAGCATCCCCGATTGTG
66 GGAAATAAAACCAGGGTTGA-AGTATCCCCTCAAAAATAACGAGGTTGGAGCATCCCCGATTGTG
*
403056 AAAAATTGATGTTTTGAAAATAAAATCGGGGTTAGAGTATCCCCTCGAAAATAACGG
130 AAAAATTGATGTTTTGAAAATAAAATCGGGGTTAGAGTATCCCCTCGAAAATAACGA
* * * *
403113 GGTTAGAGTAT-CCTCTCAAAAATAATGGGGTTGGAGTATCCCCAATTGTGAAAAATTGGGGTTG
1 GGTTGGAGTATCCCT-TCAAAAATAATAGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTG
*
403177 TGAAAATAAAACC
65 TGGAAATAAAACC
403190 GGGGCTGGAG
Statistics
Matches: 227, Mismatches: 30, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
185 36 0.16
186 189 0.83
187 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (186 bp):
GGTTGGAGTATCCCTTCAAAAATAATAGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTGT
GGAAATAAAACCAGGGTTGAAGTATCCCCTCAAAAATAACGAGGTTGGAGCATCCCCGATTGTGA
AAAATTGATGTTTTGAAAATAAAATCGGGGTTAGAGTATCCCCTCGAAAATAACGA
Found at i:403116 original size:107 final size:106
Alignment explanation
Indices: 403005--403338 Score: 359
Period size: 107 Copynumber: 3.1 Consensus size: 106
402995 AATAAAACCA
* *
403005 GGGTTAGAGTATCCCCTTAAAAGTAACGAGGTTGGAGCATCCCCGATTGTGAAAAATTGATGTTT
1 GGGTTAGAGTATCCCCTTAAAA-TAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTC
* * *
403070 TGAAAATAAAATCGGGGTTAGAGTATCCCCTCGAAAATAACG
65 TGAAAATAAAACCGGGGTTGGAGTATCCCCTTGAAAATAACG
* * * * * ** *
403112 GGGTTAGAGTATCCTCTCAAAAATAATGGGGTTGGAGTATCCCCAATTGTGAAAAATTGGGGTTG
1 GGGTTAGAGTATCCCCT-TAAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTC
* * * * *
403177 TGAAAATAAAACCGGGGCTGGAGTTTCCCTTTGGAAATAACA
65 TGAAAATAAAACCGGGGTTGGAGTATCCCCTTGAAAATAACG
* * * *
403219 GGGTTAGAGTAT-CCTTTCGAAAATAACGAGGTTAGAGTATCCCTGATTGT-AGAAAATAGATGT
1 GGGTTAGAGTATCCCCTT--AAAATAACGAGGTTGGAGTATCCCCGATTGTGA-AAAATTGATGT
* * *
403282 TCT-AGAAATAAAACCGAGGTTGGAATATCCCGTTGAAAATAACG
63 TCTGA-AAATAAAACCGGGGTTGGAGTATCCCCTTGAAAATAACG
*
403326 GGGTTGGAGTATC
1 GGGTTAGAGTATC
403339 TCTGATTGTG
Statistics
Matches: 184, Mismatches: 37, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
106 4 0.02
107 176 0.96
108 4 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (106 bp):
GGGTTAGAGTATCCCCTTAAAATAACGAGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTCT
GAAAATAAAACCGGGGTTGGAGTATCCCCTTGAAAATAACG
Done.