Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold511
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1668812
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 5 of 12
Found at i:569390 original size:61 final size:60
Alignment explanation
Indices: 569294--569595 Score: 216
Period size: 61 Copynumber: 4.8 Consensus size: 60
569284 CACGACTCTG
* * * * * *
569294 TGGCACC-TTCT-TTTCAAAGCCCATAACTCCATGGCACCCTTTTAGGCCCACAACTCCG
1 TGGCACCTTTCTCCTTCGAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCA
* * *
569352 TGGCA-TTTTCTTCATCTT-TAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCA
1 TGGCACCTTTC-TC--CTTCGAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCA
569413 TGGCACCTTTCTCCTTCGAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTC
1 TGGCACCTTTCTCCTTCGAAGCCCACAACTCCGTGGCACC-----C-TTTT-AAGCCCACAACTC
569478 CA
59 CA
* * **
569480 TGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACA
1 TGGCACCTTTCTC-CTTCGAAGCCCACAACTCCGTGGCA--------CCCTTTT--AAGCCCACA
*
569545 ACTCCG
55 ACTCCA
* * ** *
569551 TGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 TGGCACCTTTCTCCTTCGAAGCCCACAACTCCGTGGCACCCTTTT
569596 TCCCTTTTAA
Statistics
Matches: 203, Mismatches: 17, Indels: 44
0.77 0.06 0.17
Matches are distributed among these distances:
58 8 0.04
59 4 0.02
60 21 0.10
61 44 0.22
62 12 0.06
65 1 0.00
66 4 0.02
67 27 0.13
68 22 0.11
70 29 0.14
71 29 0.14
76 2 0.01
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.31
Consensus pattern (60 bp):
TGGCACCTTTCTCCTTCGAAGCCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCA
Found at i:569421 original size:26 final size:27
Alignment explanation
Indices: 569368--569491 Score: 86
Period size: 27 Copynumber: 4.1 Consensus size: 27
569358 TTTCTTCATC
* *
569368 TTTAAGTCCACAACTCCGTGGCACCCT
1 TTTAAGCCCACAACTCCATGGCACCCT
569395 TTTAAGCCCACAACTCCATGGCACCTTTCT
1 TTTAAGCCCACAACTCCATGGCACC---CT
* *
569425 CCTTCGAAGCCCACAACTCCGTGGCACCTTTTTCTT
1 --TT-TAAGCCCACAACTCCATGGCACC-----C-T
*
569461 TTTAAAGCCCACAACTCCATGGCACCTT
1 TTT-AAGCCCACAACTCCATGGCACCCT
569489 TTT
1 TTT
569492 CTTTTTAAAG
Statistics
Matches: 80, Mismatches: 7, Indels: 19
0.75 0.07 0.18
Matches are distributed among these distances:
27 23 0.29
28 4 0.05
30 2 0.03
32 2 0.03
33 21 0.26
34 23 0.29
35 4 0.05
36 1 0.01
ACGTcount: A:0.22, C:0.36, G:0.12, T:0.30
Consensus pattern (27 bp):
TTTAAGCCCACAACTCCATGGCACCCT
Found at i:569512 original size:293 final size:291
Alignment explanation
Indices: 568975--569595 Score: 810
Period size: 293 Copynumber: 2.1 Consensus size: 291
568965 ATTTTGTCTC
*
568975 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
1 AAAGTCCACGACTCAGTGGCA-CCTTTTCTTCAAAGCCCACAACTCCATGGCACC----TCTTTT
* *
569040 TAAAGCCCACAACTTCGTGGCACTTTTTTTCCCTTTTAAGTCCACAACTCCGTGGCACCTTGTTC
61 TAAAGCCCACAACTCCGTGGCACTTTTCTTCCCTTTTAAGTCCACAACTCCGTGGCACC----TC
* * * *
569105 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGCCCACAATTCCATGGCAACCTTTTTCTTC
122 CTTTTAAGCCCACAACTCCATGGCACCCTTTCAAAGCCCACAACTCCATGGCAACCTTTTTCTTC
* *
569170 TCAAAGCCCACCACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
187 TCAAAGCCCACAACTCCATGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
569235 CCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCATTTT
252 CCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT-C-TTTT
* * *
569278 AAAGTCCACGACTCTGTGGCACCTTCTT-TTCAAAGCCCATAACTCCATGGCACC-C-TTTT-AG
1 AAAGTCCACGACTCAGTGGCACCTT-TTCTTCAAAGCCCACAACTCCATGGCACCTCTTTTTAAA
*
569339 GCCCACAACTCCGTGGCA-TTTTCTT-CATCTTTAAGTCCACAACTCCGTGGCA-C-CCTTTTAA
65 GCCCACAACTCCGTGGCACTTTTCTTCCCT-TTTAAGTCCACAACTCCGTGGCACCTCCTTTTAA
* * * *
569400 GCCCACAACTCCATGGCACCTTTCTCCTTCGAAGCCCACAACTCCGTGGC-ACCTTTTTCTTTTT
129 GCCCACAACTCCATGGCACC---CT--TTCAAAGCCCACAACTCCATGGCAACCTTTTTCTTCTC
569464 AAAGCCCACAACTCCATGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
189 AAAGCCCACAACTCCATGGCA-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
569529 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
253 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
569568 AAAGCCCACAACTCCGTGGCACTCTTTT
1 AAAGTCCACGACTCAGTGGCAC-CTTTT
569596 TCCCTTTTAA
Statistics
Matches: 289, Mismatches: 20, Indels: 31
0.85 0.06 0.09
Matches are distributed among these distances:
288 26 0.09
290 25 0.09
291 6 0.02
292 37 0.13
293 93 0.32
294 29 0.10
295 18 0.06
296 4 0.01
297 1 0.00
302 28 0.10
303 22 0.08
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.32
Consensus pattern (291 bp):
AAAGTCCACGACTCAGTGGCACCTTTTCTTCAAAGCCCACAACTCCATGGCACCTCTTTTTAAAG
CCCACAACTCCGTGGCACTTTTCTTCCCTTTTAAGTCCACAACTCCGTGGCACCTCCTTTTAAGC
CCACAACTCCATGGCACCCTTTCAAAGCCCACAACTCCATGGCAACCTTTTTCTTCTCAAAGCCC
ACAACTCCATGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAA
AGCCCACAACTCCGTGGCACCTTTTTCTTTT
Found at i:569595 original size:105 final size:103
Alignment explanation
Indices: 569130--569648 Score: 516
Period size: 105 Copynumber: 5.2 Consensus size: 103
569120 CTCCGTGGCA
* * * *
569130 CCCTTTT-AAAGCCCACAATTCCATGGCAACCTTTTTC-TTCTCAAAGCCCACCACTCCGTGGCA
1 CCCTTTTCAAAGCCCACAACTCCGTGGC-ACCTTTTTCATT-TTAAAGCCCACAACTCCGTGGCA
*
569193 -CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
64 CCTTTTTC-TTTT-AAGCCCACAACTCCGTGGCACTCTTTCT
* * *
569234 CCCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCATTTTAAAGTCCACGACTCTGTGGCA
1 CCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT-CATTTTAAAGCCCACAACTCCGTGGCA
* ** * *
569299 CCTTCTT-TTCAAAGCCCATAACTCCATGGCA--------
64 CCTTTTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTCT
* * *
569330 CCCTTTT--AGGCCCACAACTCCGTGGCA-TTTTCTTCATCTTT-AAGTCCACAACTCCGTGGCA
1 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTT-TTCAT-TTTAAAGCCCACAACTCCGTGGCA
*
569391 CC-----CTTTTAAGCCCACAACTCCATGGCAC-CTTTCT
64 CCTTTTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTCT
* * *
569425 -CC--TTCGAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCATGGCACC
1 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCATTTTAAAGCCCACAACTCCGTGGCACC
*
569487 TTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
66 TTTTTC-TTTT-AAGCCCACAACTCCGTGGCACTCTTTCT
569527 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACT
1 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCATTTTAAAGCCCACAACTCCGTGGCAC-
*
569591 CTTTTTCCCTTTTAAGTCCACAACTCCGTGGCA-TCTTTCT
65 CTTTTT--CTTTTAAGCCCACAACTCCGTGGCACTCTTTCT
**
569631 CCCTTCCCAAAGCCCACA
1 CCCTTTTCAAAGCCCACA
569649 CAAGTCGGTG
Statistics
Matches: 351, Mismatches: 31, Indels: 66
0.78 0.07 0.15
Matches are distributed among these distances:
88 21 0.06
92 28 0.08
93 8 0.02
94 64 0.18
95 3 0.01
96 7 0.02
99 1 0.00
100 4 0.01
101 20 0.06
102 5 0.01
103 2 0.01
104 74 0.21
105 82 0.23
106 24 0.07
107 8 0.02
ACGTcount: A:0.21, C:0.36, G:0.12, T:0.32
Consensus pattern (103 bp):
CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCATTTTAAAGCCCACAACTCCGTGGCACC
TTTTTCTTTTAAGCCCACAACTCCGTGGCACTCTTTCT
Found at i:569713 original size:33 final size:33
Alignment explanation
Indices: 569633--569774 Score: 206
Period size: 33 Copynumber: 4.4 Consensus size: 33
569623 ATCTTTCTCC
*
569633 CTTCCCAAAGCCCACACAAGTCGGTGGCAA-CT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCT
569665 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACC-T
*
569699 CTTCC-AAAGCCCACACAAGTCGGTGGCAACCA
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCT
569731 C-TCGCTAAAGCCCACACAAGTCGGTGGCAACC-
1 CTTC-CTAAAGCCCACACAAGTCGGTGGCAACCT
569763 CTT-CT-AAGCCCA
1 CTTCCTAAAGCCCA
569775 ATATAGCTGG
Statistics
Matches: 103, Mismatches: 2, Indels: 12
0.88 0.02 0.10
Matches are distributed among these distances:
30 7 0.07
31 4 0.04
32 32 0.31
33 54 0.52
34 6 0.06
ACGTcount: A:0.28, C:0.37, G:0.18, T:0.16
Consensus pattern (33 bp):
CTTCCTAAAGCCCACACAAGTCGGTGGCAACCT
Found at i:569751 original size:66 final size:66
Alignment explanation
Indices: 569637--569767 Score: 221
Period size: 65 Copynumber: 2.0 Consensus size: 66
569627 TTCTCCCTTC
*
569637 CCAAAGCCCACACAAGTCGGTGGCAACTCTTCCTAAAGCCCACACAAGTCGGTGGCAA-CCTTCT
1 CCAAAGCCCACACAAGTCGGTGGCAACTCCTCCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
569701 T
66 T
569702 CCAAAGCCCACACAAGTCGGTGGCAAC-CACTCGCTAAAGCCCACACAAGTCGGTGGCAACCCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACTC-CTC-CTAAAGCCCACACAAGTCGGTGGCAACCCTT
569766 CT
64 CT
569768 AAGCCCAATA
Statistics
Matches: 62, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
64 1 0.02
65 29 0.47
66 26 0.42
67 6 0.10
ACGTcount: A:0.28, C:0.37, G:0.19, T:0.16
Consensus pattern (66 bp):
CCAAAGCCCACACAAGTCGGTGGCAACTCCTCCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT
T
Found at i:569825 original size:49 final size:48
Alignment explanation
Indices: 569767--570135 Score: 461
Period size: 49 Copynumber: 7.8 Consensus size: 48
569757 GCAACCCTTC
* * * *
569767 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTT
* *
569816 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
*
569864 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C-CA---T
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
* * *
569907 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTT
* *
569956 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACCTTGGCACCTCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
570004 TAAGTCCAAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTT
1 TAAGTCC-AATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
* *
570048 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC---T-CATCTT
* *
570100 TAAGTTCAATGTAGCTGGCCTTGAATTAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
570136 ACATCCTTTT
Statistics
Matches: 282, Mismatches: 22, Indels: 29
0.85 0.07 0.09
Matches are distributed among these distances:
43 67 0.24
44 11 0.04
46 4 0.01
47 1 0.00
48 57 0.20
49 106 0.38
50 1 0.00
52 35 0.12
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
Found at i:569994 original size:92 final size:90
Alignment explanation
Indices: 569767--570135 Score: 386
Period size: 92 Copynumber: 3.9 Consensus size: 90
569757 GCAACCCTTC
* * * *
569767 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--CA-C-TTAAGTCCAATGTAGCT
*
569832 GGCCTTGACTCAGCACATTGGCACCTCACCTT
61 GGCCTTGAATCAGCACATTGGCACCT-A-CTT
* *
569864 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCA-TTAAGTCCAATATAGCTGGCCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCACTTAAGTCCAATGTAGCTGGCCT
*
569928 TGAATCAGCATATTGGCACCTTTATCTT
66 TGAATCAGCACATTGGCACC--TA-CTT
*
569956 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACCTTGGCACCTCACCTTTAAGTCCAAATGTAGCT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-CA-C-TTAAGTCC-AATGTAGCT
570021 GGCCTTGAATCAGCACATTGGCA-C--CTT
61 GGCCTTGAATCAGCACATTGGCACCTACTT
* * *
570048 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTA
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA------CCA-C-TTAAGTCCAATGTA
*
570113 GCTGGCCTTGAATTAGCACATTG
58 GCTGGCCTTGAATCAGCACATTG
570136 ACATCCTTTT
Statistics
Matches: 239, Mismatches: 20, Indels: 28
0.83 0.07 0.10
Matches are distributed among these distances:
91 39 0.16
92 80 0.33
93 2 0.01
94 4 0.02
95 28 0.12
96 12 0.05
97 44 0.18
98 30 0.13
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.30
Consensus pattern (90 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCACTTAAGTCCAATGTAGCTGGCCT
TGAATCAGCACATTGGCACCTACTT
Found at i:570123 original size:52 final size:53
Alignment explanation
Indices: 570045--570198 Score: 184
Period size: 52 Copynumber: 2.9 Consensus size: 53
570035 ACATTGGCAC
570045 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
* * * * *
570097 CTTTAAGTTCAATGTAGCTGGCCTTGAATTAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTCTCAT
* * * * * *
570152 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
570199 ATCACTTTTC
Statistics
Matches: 83, Mismatches: 16, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
52 37 0.45
53 5 0.06
54 6 0.07
55 35 0.42
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
Found at i:570256 original size:67 final size:68
Alignment explanation
Indices: 570148--570274 Score: 184
Period size: 67 Copynumber: 1.9 Consensus size: 68
570138 ATCCTTTTTC
* * *
570148 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
570212 TCT
66 TCT
* * * *
570215 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
570275 AAAACCCAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
67 48 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:570900 original size:19 final size:21
Alignment explanation
Indices: 570876--570929 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
570866 AGTAATACAT
570876 TGTATCGATACAA-CACT-TA
1 TGTATCGATACAATCACTGTA
* * *
570895 TGTATCGATATAATTACTGTT
1 TGTATCGATACAATCACTGTA
570916 TGTATCGATACAAT
1 TGTATCGATACAAT
570930 TTGTTGAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 12 0.41
20 3 0.10
21 14 0.48
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (21 bp):
TGTATCGATACAATCACTGTA
Found at i:571786 original size:49 final size:47
Alignment explanation
Indices: 571733--571883 Score: 150
Period size: 49 Copynumber: 3.2 Consensus size: 47
571723 TAATGATGTC
*
571733 GGACTTAAAGATAAAGATAACAATGTGCTGATTCAAGGTCGACAACATT
1 GGACTTAAAGAT-AAGATACCAATGTGCTGATTCAAGGTCGA-AACATT
* * * * *
571782 GGACTTAAAG----G-TGCCAATATGCTGATTCAAGGCTGGAGATATT
1 GGACTTAAAGATAAGATACCAATGTGCTGATTCAAGG-TCGAAACATT
* *
571825 GGACTTAAAGATGAAGATACCAATGTGCTGATTCAAGGCCAAAGACATT
1 GGACTTAAAGAT-AAGATACCAATGTGCTGATTCAAGGTCGAA-ACATT
571874 GGACTTAAAG
1 GGACTTAAAG
571884 GTGCCAATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 16
0.74 0.12 0.15
Matches are distributed among these distances:
43 32 0.40
44 4 0.05
48 2 0.02
49 43 0.53
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.25
Consensus pattern (47 bp):
GGACTTAAAGATAAGATACCAATGTGCTGATTCAAGGTCGAAACATT
Found at i:571851 original size:92 final size:91
Alignment explanation
Indices: 571694--571928 Score: 319
Period size: 92 Copynumber: 2.5 Consensus size: 91
571684 CTTAGGAATG
* * * * *
571694 TTAAAGATGCCAATATGCTGATTTAAGGCTAATGATGTCGGACTTAAAGATAAAGATAACAATGT
1 TTAAAGGTGCCAATATGCTGATTCAAGGCTGA-GATATTGGACTTAAAGATAAAGATAACAATGT
* *
571759 GCTGATTCAAGGTCGACA-ACATTGGAC
65 GCTGATTCAAGG-CCAAAGACATTGGAC
* *
571786 TTAAAGGTGCCAATATGCTGATTCAAGGCTGGAGATATTGGACTTAAAGATGAAGATACCAATGT
1 TTAAAGGTGCCAATATGCTGATTCAAGGCT-GAGATATTGGACTTAAAGATAAAGATAACAATGT
571851 GCTGATTCAAGGCCAAAGACATTGGAC
65 GCTGATTCAAGGCCAAAGACATTGGAC
* *
571878 TTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAAGA
1 TTAAAGGTGCCAATATGCTGATTCAAGG-CTGAGATATTGGACTTA-AAGA
571929 AGATGCCACC
Statistics
Matches: 128, Mismatches: 11, Indels: 7
0.88 0.08 0.05
Matches are distributed among these distances:
91 3 0.02
92 119 0.93
93 6 0.05
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (91 bp):
TTAAAGGTGCCAATATGCTGATTCAAGGCTGAGATATTGGACTTAAAGATAAAGATAACAATGTG
CTGATTCAAGGCCAAAGACATTGGAC
Found at i:571906 original size:43 final size:43
Alignment explanation
Indices: 571753--571923 Score: 173
Period size: 43 Copynumber: 3.8 Consensus size: 43
571743 ATAAAGATAA
* * *
571753 CAATGTGCTGATTCAAGGTC-GACAACATTGGACTTAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGA-GACATTGGACTTAAAGGTGC
** * *
571796 CAATATGCTGATTCAAGGCTGGAGATATTGGACTTAAAGATGAAGATAC
1 CAATATGCTGATTCAAGGCCAGAGACATTGGACTT-AA-A-G--G-TGC
* *
571845 CAATGTGCTGATTCAAGGCCAAAGACATTGGACTTAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGAGACATTGGACTTAAAGGTGC
* *
571888 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
1 CAATATGCTGATTCAAGGCCAGAGACATTGGACTTA
571924 GAAGAAGATG
Statistics
Matches: 105, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 61 0.58
44 5 0.05
45 1 0.01
46 2 0.02
47 1 0.01
48 3 0.03
49 32 0.30
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (43 bp):
CAATATGCTGATTCAAGGCCAGAGACATTGGACTTAAAGGTGC
Found at i:572032 original size:57 final size:58
Alignment explanation
Indices: 571986--572275 Score: 320
Period size: 57 Copynumber: 5.0 Consensus size: 58
571976 TATGCTTTTG
* * *
571986 AAGGTTGCCACTGACATGTGGGCTTTTGAAAAGATACCACTGACTTGTGGGCTTTGGAA
1 AAGGATGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTGG-A
* * * *
572045 AAGGGTGCCACTGACTTGT-GGCTTTTG-AAGGTTGCCACTAACTTGTGGGCTTTGGA
1 AAGGATGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTGGA
** * *
572101 AAAAATGCCA-TGGACTTGTGGGCTTTTG-AAGGTTGCCACTGACTTGTGGGCTTTGGA
1 AAGGATGCCACT-GACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTGGA
* * * * * *
572158 AAAGATGCCACTAACTTGTGGGCTTTGGAAAATGGTGCCACTGACTTATGGGCTTTTG-
1 AAGGATGCCACTGACTTGTGGGCTTTTGAAAA-GATGCCACTGACTTGTGGGCTTTGGA
* * * * *
572216 AAGGTTGCCACTAACTTGTGGGCTATGGAAAAGATGCCACTGACTTATGGGCTTTGGA
1 AAGGATGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTGGA
572274 AA
1 AA
572276 AAGTGAGGAA
Statistics
Matches: 203, Mismatches: 22, Indels: 13
0.85 0.09 0.05
Matches are distributed among these distances:
55 1 0.00
56 15 0.07
57 106 0.52
58 42 0.21
59 39 0.19
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (58 bp):
AAGGATGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTGGA
Found at i:572034 original size:29 final size:29
Alignment explanation
Indices: 571991--572276 Score: 321
Period size: 29 Copynumber: 9.9 Consensus size: 29
571981 TTTTGAAGGT
* *
571991 TGCCACTGACATGTGGGCTTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
* *
572020 TACCACTGACTTGTGGGCTTTGGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTGGAAAA-GA
* * *
572050 TGCCACTGACTTGT-GGCTTTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
* *
572077 TGCCACTAACTTGTGGGCTTTGGAAAAAA
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
* * *
572106 TGCCA-TGGACTTGTGGGCTTTTG-AAGGT
1 TGCCACT-GACTTGTGGGCTTTGGAAAAGA
572134 TGCCACTGACTTGTGGGCTTTGGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
* *
572163 TGCCACTAACTTGTGGGCTTTGGAAAATGG
1 TGCCACTGACTTGTGGGCTTTGGAAAA-GA
* * * *
572193 TGCCACTGACTTATGGGCTTTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
* *
572221 TGCCACTAACTTGTGGGCTATGGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGGAAAAGA
*
572250 TGCCACTGACTTATGGGCTTTGGAAAA
1 TGCCACTGACTTGTGGGCTTTGGAAAA
572277 AGTGAGGAAT
Statistics
Matches: 212, Mismatches: 37, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
27 14 0.07
28 52 0.25
29 111 0.52
30 35 0.17
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (29 bp):
TGCCACTGACTTGTGGGCTTTGGAAAAGA
Found at i:572075 original size:86 final size:85
Alignment explanation
Indices: 571945--572276 Score: 346
Period size: 86 Copynumber: 3.8 Consensus size: 85
571935 CACCAACTTG
* * * *
571945 TGTGGGCTTTTGAAAGGGTTG-CACCAACTTGTATGCTTTTGAAGGTTGCCACTGACATGTGGGC
1 TGTGGGCTTTTG-AAGGG-TGCCACTAACTTGTAGGCTTTTGAAGGTTGCCACTAACTTGTGGGC
* *
572009 TTTTGAAAAGATACCACTGACT
64 TTTGGAAAAGATGCCACTGACT
* *
572031 TGTGGGCTTTGGAAAAGGGTGCCACTGACTTGT-GGCTTTTGAAGGTTGCCACTAACTTGTGGGC
1 TGTGGGCTTTTG--AAGGGTGCCACTAACTTGTAGGCTTTTGAAGGTTGCCACTAACTTGTGGGC
*
572095 TTTGGAAAAAATGCCA-TGGACT
64 TTTGGAAAAGATGCCACT-GACT
* * * * * *
572117 TGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAACTTGTGGGCT
1 TGTGGGCTTTTGAAGGGTGCCACTAACTTGTAGGCTTTTG-AAGGTTGCCACTAACTTGTGGGCT
*
572182 TTGGAAAATGGTGCCACTGACT
65 TTGGAAAA-GATGCCACTGACT
* * * * * * * * *
572204 TATGGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTATGGAAAAGATGCCACTGACTTATGGGCT
1 TGTGGGCTTTTGAAGGGTGCCACTAACTTGTAGGCTTTTG-AAGGTTGCCACTAACTTGTGGGCT
572269 TTGGAAAA
65 TTGGAAAA
572277 AGTGAGGAAT
Statistics
Matches: 218, Mismatches: 21, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
84 18 0.08
85 8 0.04
86 99 0.45
87 92 0.42
88 1 0.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (85 bp):
TGTGGGCTTTTGAAGGGTGCCACTAACTTGTAGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTT
TGGAAAAGATGCCACTGACT
Found at i:572203 original size:143 final size:144
Alignment explanation
Indices: 571979--572270 Score: 480
Period size: 143 Copynumber: 2.0 Consensus size: 144
571969 CAACTTGTAT
* *
571979 GCTTTTGAAGGTTGCCACTGACATGTGGGCTTTTGAAAAGATACCACTGACTTGTGGGCTTTGGA
1 GCTTTTGAAGGTTGCCACTGACATGTGGGCTTTGGAAAAGATACCACTAACTTGTGGGCTTTGGA
* *
572044 AAAGGGTGCCACTGACTTGT-GGCTTTTGAAGGTTGCCACTAACTTGTGGGCTTTGGAAAAAATG
66 AAAGGGTGCCACTGACTTATGGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTATGGAAAAAATG
*
572108 CCA-TGGACTTGTGG
131 CCACT-GACTTATGG
* *
572122 GCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAACTTGTGGGCTTTGGA
1 GCTTTTGAAGGTTGCCACTGACATGTGGGCTTTGGAAAAGATACCACTAACTTGTGGGCTTTGGA
* *
572187 AAATGGTGCCACTGACTTATGGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTATGGAAAAGATG
66 AAAGGGTGCCACTGACTTATGGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTATGGAAAAAATG
572252 CCACTGACTTATGG
131 CCACTGACTTATGG
572266 GCTTT
1 GCTTT
572271 GGAAAAAGTG
Statistics
Matches: 138, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
143 79 0.57
144 58 0.42
145 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (144 bp):
GCTTTTGAAGGTTGCCACTGACATGTGGGCTTTGGAAAAGATACCACTAACTTGTGGGCTTTGGA
AAAGGGTGCCACTGACTTATGGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTATGGAAAAAATG
CCACTGACTTATGG
Found at i:576809 original size:52 final size:52
Alignment explanation
Indices: 576660--576788 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
576650 CGAAATATGA
* * *
576660 AAATTTGCCTACATGTATCAATACATTTCATAGTGTATTGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
576712 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
576764 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
576789 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:576893 original size:32 final size:32
Alignment explanation
Indices: 576849--576946 Score: 142
Period size: 32 Copynumber: 3.0 Consensus size: 32
576839 AGTAGCTTAT
* *
576849 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCAATAC
*
576881 ATTGTATTGATACAACACTTATGTATCAATAC
1 ATTGTATCGATACAACACTTATGTATCAATAC
* *
576913 ATTGTATCGATACAACACTTTATATATCTATAC
1 ATTGTATCGATACAACAC-TTATGTATCAATAC
576946 A
1 A
576947 AATCGTTGAA
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
32 46 0.78
33 13 0.22
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCAATAC
Found at i:577347 original size:1 final size:1
Alignment explanation
Indices: 577343--577410 Score: 73
Period size: 1 Copynumber: 68.0 Consensus size: 1
577333 GTTGTTGTTG
* * * * * * *
577343 TTTTTGTTTTTTTTTTTTGTTTTTTTTTTGTTTTTTTGTTTGTTTTTTTTTTGTTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
577408 TTT
1 TTT
577411 GTGGAGGACG
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (1 bp):
T
Found at i:577349 original size:12 final size:12
Alignment explanation
Indices: 577328--577412 Score: 62
Period size: 11 Copynumber: 7.8 Consensus size: 12
577318 CGGACCCTTT
*
577328 TTGTTGTTGTTG
1 TTGTTTTTGTTG
577340 TTGTTTTTGTT-
1 TTGTTTTTGTTG
*
577351 TT-TTTTTTTTG
1 TTGTTTTTGTTG
*
577362 TT-TTTTTTTTG
1 TTGTTTTTGTTG
577373 TT-TTTTTG-T-
1 TTGTTTTTGTTG
*
577382 TTGTTTTT-TTT
1 TTGTTTTTGTTG
577393 TTG-TTTT-TTG
1 TTGTTTTTGTTG
*
577403 TTTTTTTTGT
1 TTGTTTTTGT
577413 GGAGGACGCC
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
9 2 0.03
10 22 0.35
11 27 0.44
12 11 0.18
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (12 bp):
TTGTTTTTGTTG
Found at i:577351 original size:6 final size:6
Alignment explanation
Indices: 577325--577407 Score: 91
Period size: 6 Copynumber: 13.8 Consensus size: 6
577315 ATCCGGACCC
* * *
577325 TTTTTG TTGTTG TTGTTG TTTTTG TTTTTTT TTTTTG TTTTT- TTTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG -TTTTTG TTTTTG TTTTTG TTTTTG
577373 TTTTT- TTGTTTG TTTTT- TTTTTG TTTTTTG TTTTT
1 TTTTTG TT-TTTG TTTTTG TTTTTG -TTTTTG TTTTT
577408 TTTGTGGAGG
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
5 12 0.18
6 42 0.63
7 13 0.19
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (6 bp):
TTTTTG
Found at i:577355 original size:9 final size:9
Alignment explanation
Indices: 577325--577412 Score: 85
Period size: 9 Copynumber: 9.8 Consensus size: 9
577315 ATCCGGACCC
*
577325 TTTTTGTTG
1 TTTTTGTTT
* *
577334 TTGTTGTTG
1 TTTTTGTTT
577343 TTTTTGTTT
1 TTTTTGTTT
577352 TTTTT-TTT
1 TTTTTGTTT
577360 TGTTTT-TTT
1 T-TTTTGTTT
577369 TTTGTT-TTT
1 TTT-TTGTTT
577378 TTGTTTGTTT
1 TT-TTTGTTT
577388 TTTTT-TTGT
1 TTTTTGTT-T
577397 TTTTTGTTT
1 TTTTTGTTT
577406 TTTTTGT
1 TTTTTGT
577413 GGAGGACGCC
Statistics
Matches: 70, Mismatches: 3, Indels: 12
0.82 0.04 0.14
Matches are distributed among these distances:
8 8 0.11
9 54 0.77
10 8 0.11
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (9 bp):
TTTTTGTTT
Found at i:577365 original size:11 final size:11
Alignment explanation
Indices: 577337--577410 Score: 98
Period size: 11 Copynumber: 6.7 Consensus size: 11
577327 TTTGTTGTTG
*
577337 TTGTTGTTTTTG
1 TTGTT-TTTTTT
577349 TT-TTTTTTTT
1 TTGTTTTTTTT
577359 TTGTTTTTTTT
1 TTGTTTTTTTT
577370 TTGTTTTTTTGT
1 TTGTTTTTTT-T
577382 TTGTTTTTTTT
1 TTGTTTTTTTT
*
577393 TTGTTTTTTGT
1 TTGTTTTTTTT
577404 TT-TTTTT
1 TTGTTTTT
577411 GTGGAGGACG
Statistics
Matches: 58, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
10 12 0.21
11 33 0.57
12 13 0.22
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (11 bp):
TTGTTTTTTTT
Found at i:577382 original size:41 final size:42
Alignment explanation
Indices: 577325--577410 Score: 131
Period size: 41 Copynumber: 2.1 Consensus size: 42
577315 ATCCGGACCC
*
577325 TTTTTGTTGTTGTTG-TTGTTTTTGTTTTTTTTTTTTGTTTTT
1 TTTTTGTTGTTGTTGTTTGTTTTT-TTTTTGTTTTTTGTTTTT
*
577367 TTTTTGTT-TTTTTGTTTGTTTTTTTTTTGTTTTTTGTTTTT
1 TTTTTGTTGTTGTTGTTTGTTTTTTTTTTGTTTTTTGTTTTT
577408 TTT
1 TTT
577411 GTGGAGGACG
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
41 25 0.61
42 16 0.39
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (42 bp):
TTTTTGTTGTTGTTGTTTGTTTTTTTTTTGTTTTTTGTTTTT
Found at i:591413 original size:19 final size:21
Alignment explanation
Indices: 591389--591440 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
591379 AGCGATACAT
591389 TGTATCGATACAA-CACT-TA
1 TGTATCGATACAATCACTGTA
* *
591408 TGTATCGATACAATTACTGTT
1 TGTATCGATACAATCACTGTA
591429 TGTATCGATACA
1 TGTATCGATACA
591441 TTCTAGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.45
20 3 0.10
21 13 0.45
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (21 bp):
TGTATCGATACAATCACTGTA
Found at i:592486 original size:21 final size:20
Alignment explanation
Indices: 592441--592488 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
592431 TTTAATGAAG
592441 ATTTTGATGAAAAATAGATA
1 ATTTTGATGAAAAATAGATA
*
592461 GTTTTGATGTAAAAAT-GATGA
1 ATTTTGATG-AAAAATAGAT-A
592482 ATTTTGA
1 ATTTTGA
592489 AAAGGATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.40
Consensus pattern (20 bp):
ATTTTGATGAAAAATAGATA
Found at i:600609 original size:12 final size:12
Alignment explanation
Indices: 600592--600629 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
600582 CAAGTCAACT
600592 TCATCATTATCA
1 TCATCATTATCA
*
600604 TCATCATCATCA
1 TCATCATTATCA
*
600616 TCATCTTTATCA
1 TCATCATTATCA
600628 TC
1 TC
600630 TTTGATGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (12 bp):
TCATCATTATCA
Found at i:602247 original size:13 final size:13
Alignment explanation
Indices: 602229--602254 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
602219 ACTTTTTACC
602229 ATGTATCGATACA
1 ATGTATCGATACA
602242 ATGTATCGATACA
1 ATGTATCGATACA
602255 TTTCACTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:602598 original size:41 final size:41
Alignment explanation
Indices: 602552--602653 Score: 186
Period size: 41 Copynumber: 2.5 Consensus size: 41
602542 TTTTAGAGTA
* *
602552 TTTTTAATAGAATAAAACTTGTTTACGGTTTTTCAAATCTT
1 TTTTTAATAGAATAAAACTTGTTTACAGTTTTTCAAATATT
602593 TTTTTAATAGAATAAAACTTGTTTACAGTTTTTCAAATATT
1 TTTTTAATAGAATAAAACTTGTTTACAGTTTTTCAAATATT
602634 TTTTTAATAGAATAAAACTT
1 TTTTTAATAGAATAAAACTT
602654 CAATTTTATT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.48
Consensus pattern (41 bp):
TTTTTAATAGAATAAAACTTGTTTACAGTTTTTCAAATATT
Found at i:604845 original size:112 final size:112
Alignment explanation
Indices: 604715--604946 Score: 464
Period size: 112 Copynumber: 2.1 Consensus size: 112
604705 TGCTTATGTG
604715 ACCCTAAAAAACTTGGTTTTAAAATGAAATTTTTGACCTAGCCTAAAGTACACATGACATGATAG
1 ACCCTAAAAAACTTGGTTTTAAAATGAAATTTTTGACCTAGCCTAAAGTACACATGACATGATAG
604780 TACATATGTGAACTCTAAAGATTTAATTTGATGGAAATGACCAAATT
66 TACATATGTGAACTCTAAAGATTTAATTTGATGGAAATGACCAAATT
604827 ACCCTAAAAAACTTGGTTTTAAAATGAAATTTTTGACCTAGCCTAAAGTACACATGACATGATAG
1 ACCCTAAAAAACTTGGTTTTAAAATGAAATTTTTGACCTAGCCTAAAGTACACATGACATGATAG
604892 TACATATGTGAACTCTAAAGATTTAATTTGATGGAAATGACCAAATT
66 TACATATGTGAACTCTAAAGATTTAATTTGATGGAAATGACCAAATT
604939 ACCCTAAA
1 ACCCTAAA
604947 TGATTAATTT
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
112 120 1.00
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.31
Consensus pattern (112 bp):
ACCCTAAAAAACTTGGTTTTAAAATGAAATTTTTGACCTAGCCTAAAGTACACATGACATGATAG
TACATATGTGAACTCTAAAGATTTAATTTGATGGAAATGACCAAATT
Found at i:610789 original size:20 final size:20
Alignment explanation
Indices: 610764--610840 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
610754 GTAAAAAAAC
610764 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
*
610784 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
*
610804 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
*
610824 AAAATGTATCGATACAT
1 AGAATGTATCGATACAT
610841 CTGGGTACTT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 49 0.96
21 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:611710 original size:62 final size:61
Alignment explanation
Indices: 611522--611711 Score: 204
Period size: 61 Copynumber: 3.1 Consensus size: 61
611512 GGCATTCCAC
* * * ** *
611522 CTTTTCAAGCCTTAACCTTTTCAAGTTTTAATTATGAGTCCTTTTCAA-AAAGCCCTTATT
1 CTTTTCAAGCCTTAACCTTTTCAAGGTTCAATTATGAGTCCTTTTTAAGATCGCCTTTATT
* ** * *
611582 CTTCTTCAGGCCTTAACCTTTTCAAGGTTCAATTACAAGTCCTTTTTAGGATCAGCCTTTAGT
1 CTT-TTCAAGCCTTAACCTTTTCAAGGTTCAATTATGAGTCCTTTTTAAGATC-GCCTTTATT
* * *
611645 CTTTTCAAGCCTTAACCTTTTTCAAGGTTCAATTATGAGT-TTTTTTAAGATCGTTCTTTTTT
1 CTTTTCAAGCCTTAACC-TTTTCAAGGTTCAATTATGAGTCCTTTTTAAGATCG-CCTTTATT
611707 CTTTT
1 CTTTT
611712 TAGGCACTCC
Statistics
Matches: 106, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
60 3 0.03
61 39 0.37
62 34 0.32
63 30 0.28
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.46
Consensus pattern (61 bp):
CTTTTCAAGCCTTAACCTTTTCAAGGTTCAATTATGAGTCCTTTTTAAGATCGCCTTTATT
Found at i:611729 original size:79 final size:79
Alignment explanation
Indices: 611646--611843 Score: 204
Period size: 79 Copynumber: 2.5 Consensus size: 79
611636 GCCTTTAGTC
* * * ** *
611646 TTTTCAAGCCTTAACCTTTTTCAAGGTTCAATTATGAGTTTTTTTAAGATCGTTCTTT-TTTCTT
1 TTTTCAAGCCTTAATCTTTTTCAAGGTTCAATTATGAGTTTTTTCAAGATCG-CCTTTCTACCAT
611710 TTTAGGCACTCCACA
65 TTTAGGCACTCCACA
* * *
611725 TTTTC-AGGCTTCAATCTTCTT-AAGGTTAAATTATGAGTATTTTTCAAGATCGCCTTTCTACCA
1 TTTTCAAGCCTT-AATCTTTTTCAAGGTTCAATTATGAGT-TTTTTCAAGATCGCCTTTCTACCA
* *** *
611788 TTTTAGGCATTTTGCC
64 TTTTAGGCACTCCACA
* *
611804 TTTTCAAGTCTTAATCTTTTTCAAGGTTCAATTACGAGTT
1 TTTTCAAGCCTTAATCTTTTTCAAGGTTCAATTATGAGTT
611844 CCTTTAGAAT
Statistics
Matches: 96, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
78 25 0.26
79 51 0.53
80 20 0.21
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (79 bp):
TTTTCAAGCCTTAATCTTTTTCAAGGTTCAATTATGAGTTTTTTCAAGATCGCCTTTCTACCATT
TTAGGCACTCCACA
Found at i:612710 original size:20 final size:22
Alignment explanation
Indices: 612663--612718 Score: 80
Period size: 20 Copynumber: 2.6 Consensus size: 22
612653 ACCAAGGAAA
612663 TGTATCGATACATTAGGATACAT
1 TGTATCGATACATTA-GATACAT
*
612686 TGTATCGATACATTA-AT-CTT
1 TGTATCGATACATTAGATACAT
612706 TGTATCGATACAT
1 TGTATCGATACAT
612719 CTGGGAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 15 0.47
21 2 0.06
23 15 0.47
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (22 bp):
TGTATCGATACATTAGATACAT
Found at i:614220 original size:12 final size:13
Alignment explanation
Indices: 614197--614221 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
614187 TTCTAAAATA
614197 CTAAATTTTTTTT
1 CTAAATTTTTTTT
614210 CTAAATTTTTTT
1 CTAAATTTTTTT
614222 AGTATTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (13 bp):
CTAAATTTTTTTT
Found at i:626685 original size:32 final size:32
Alignment explanation
Indices: 626630--626715 Score: 91
Period size: 33 Copynumber: 2.5 Consensus size: 32
626620 TCCTCCGTAA
*
626630 AAAAAAAACAACAACAACAAAACAAAAAAAAGAGAGAT
1 AAAAAAAACAAC-A-AACAAAA-ACAAAAAA-A-A-AT
626668 AAAAAAAACAAACAAACAAAAACAAAAAAAAAT
1 AAAAAAAAC-AACAAACAAAAACAAAAAAAAAT
*
626701 TAAAAAAACAACAAA
1 AAAAAAAACAACAAA
626716 AAAGGGTCTG
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
32 6 0.13
33 10 0.22
34 1 0.02
35 1 0.02
36 7 0.16
37 7 0.16
38 10 0.22
39 3 0.07
ACGTcount: A:0.80, C:0.13, G:0.03, T:0.03
Consensus pattern (32 bp):
AAAAAAAACAACAAACAAAAACAAAAAAAAAT
Found at i:628192 original size:28 final size:28
Alignment explanation
Indices: 628153--628215 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
628143 CATTCCTCAC
628153 CCTTTTCAAAGCCCACAAGTCAGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
628181 CCTTTTCGAAGCCCACAAGTCCGTGGCA
1 CCTTTTCAAAGCCCACAAGTCAGTGGCA
628209 CTCTTTT
1 C-CTTTT
628216 TCCTTTTAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 27 0.84
29 5 0.16
ACGTcount: A:0.22, C:0.33, G:0.17, T:0.27
Consensus pattern (28 bp):
CCTTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:628228 original size:34 final size:34
Alignment explanation
Indices: 628189--628317 Score: 213
Period size: 34 Copynumber: 3.8 Consensus size: 34
628179 CACCTTTTCG
*
628189 AAGCCCACAAGTCCGTGGCACTCTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
628223 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
* *
628257 AAACCCATAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
* *
628291 AAGTCCACAACTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACTCTTTT
628318 AAGTCCACAG
Statistics
Matches: 88, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 88 1.00
ACGTcount: A:0.19, C:0.34, G:0.12, T:0.34
Consensus pattern (34 bp):
AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
Found at i:628315 original size:27 final size:27
Alignment explanation
Indices: 628285--628364 Score: 151
Period size: 27 Copynumber: 3.0 Consensus size: 27
628275 CACTCTTTTT
628285 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
628312 CCTTTTAAGTCCACAGCTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
628339 CCTTTTAAGTCCACAACTCCGTGGCA
1 CCTTTTAAGTCCACAACTCCGTGGCA
628365 TCTTTCTCTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.21, C:0.36, G:0.16, T:0.26
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:628446 original size:28 final size:30
Alignment explanation
Indices: 628397--628485 Score: 103
Period size: 28 Copynumber: 3.0 Consensus size: 30
628387 AGTCAAGGGC
* *
628397 ACCCTTTTCAAAAGCCCACAAGTTAGTGGCA
1 ACCC-TTTCAAAAGCACACAAGTTGGTGGCA
*
628428 A-TCTTT-AAAAGCACACAAGTTGGT-GCA
1 ACCCTTTCAAAAGCACACAAGTTGGTGGCA
628455 ACCCTTTCAAAAGCCCACACAAGTTGGTGGC
1 ACCCTTTCAAAAG--CACACAAGTTGGTGGC
628486 GTCTTCTTCT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
27 4 0.08
28 20 0.41
29 8 0.16
30 1 0.02
31 14 0.29
32 2 0.04
ACGTcount: A:0.33, C:0.27, G:0.18, T:0.22
Consensus pattern (30 bp):
ACCCTTTCAAAAGCACACAAGTTGGTGGCA
Found at i:628851 original size:52 final size:52
Alignment explanation
Indices: 628773--628908 Score: 170
Period size: 52 Copynumber: 2.6 Consensus size: 52
628763 GCACAAGGCT
* * * *
628773 AATATCGCTGG-CTTCGAATCAGCATATTGGCGCCTTT-GC-TATCTTTAAGTCC
1 AATATCGCTGGCCTT-GAATCAGCATATTGGCACCTTTAACAT-TC-CTAAGCCC
*
628825 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACATTCCTAAGCCC
*
628877 AATATCGCTGGCCTTGAATCAGCACATTGGCA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA
628909 TAAGTCTGAT
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
52 68 0.91
53 6 0.08
54 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (52 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAACATTCCTAAGCCC
Found at i:628856 original size:91 final size:87
Alignment explanation
Indices: 628687--628856 Score: 216
Period size: 91 Copynumber: 1.9 Consensus size: 87
628677 TTCAAGTCCG
* *
628687 ATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTCTCTAAGACCAATGTCGCTGGTCTTGAA
1 ATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTCTCTAAGACCAATATCGCTGGCCTTGAA
*
628752 TTAGCACATTGGCACAAGGCTA
66 TCAGCACATTGGCACAAGGCTA
* * * *
628774 ATATCGCTGG-CTTCGAATCAGCATATTGGCGCCTTTGCTATCTTTAAGTCCAATATCGCTGGCC
1 ATATCACTGGCCTT-GAATCAGCATATTGGCACC-TT-C--TCTCTAAGACCAATATCGCTGGCC
*
628838 TTGAATCAGCATATTGGCA
61 TTGAATCAGCACATTGGCA
628857 TCTTTAACAT
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
86 3 0.04
87 27 0.39
88 2 0.03
89 1 0.01
91 37 0.53
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (87 bp):
ATATCACTGGCCTTGAATCAGCATATTGGCACCTTCTCTCTAAGACCAATATCGCTGGCCTTGAA
TCAGCACATTGGCACAAGGCTA
Found at i:628908 original size:143 final size:138
Alignment explanation
Indices: 628641--628997 Score: 429
Period size: 143 Copynumber: 2.6 Consensus size: 138
628631 AGGACCAATG
* * * * * *
628641 TCGCTAGCCTCGAATCAGCATATTGGCACCTTC-ATATTCAAGTCCGATATCACTGGCCTTGAAT
1 TCGCTGGCTTCGAATCAGCATATTGGCACCTTCTATCTTTAAGTCCAATATCGCTGGCCTTGAAT
* * *
628705 CAGCATATTGGCA-CCTTCTCTCTAAGACCAATGTCGCTGGTCTTGAATTAGCACATTGGCACAA
66 CAGCATATTGGCATCCTTCTCTCTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACAA
628769 GGCTAATA
131 GGCTAATA
*
628777 TCGCTGGCTTCGAATCAGCATATTGGCGCCTTTGCTATCTTTAAGTCCAATATCGCTGGCCTTGA
1 TCGCTGGCTTCGAATCAGCATATTGGCACC-TT-CTATCTTTAAGTCCAATATCGCTGGCCTTGA
* *
628842 ATCAGCATATTGGCATCTTTAACAT-TCCTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTG
64 ATCAGCATATTGGCATCCTT--C-TCT-CTAAGACCAATATCGCTGGCCTTGAATCAGCACATTG
* * *
628906 GCATAAGTCTGATA
125 GCACAAGGCTAATA
* * *
628920 TGGCTGGCCTT-GAATCAGCATATTGGCACCTT-TATCTTTAAGACCAATGTCGCTGG-CTTAGA
1 TCGCTGG-CTTCGAATCAGCATATTGGCACCTTCTATCTTTAAGTCCAATATCGCTGGCCTT-GA
*
628982 ATCAGCACATTGGCAT
64 ATCAGCATATTGGCAT
628998 AAGCCCAATA
Statistics
Matches: 191, Mismatches: 20, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
136 27 0.14
137 2 0.01
138 1 0.01
139 43 0.23
140 42 0.22
142 4 0.02
143 69 0.36
144 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (138 bp):
TCGCTGGCTTCGAATCAGCATATTGGCACCTTCTATCTTTAAGTCCAATATCGCTGGCCTTGAAT
CAGCATATTGGCATCCTTCTCTCTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACAA
GGCTAATA
Found at i:628994 original size:49 final size:48
Alignment explanation
Indices: 628922--629365 Score: 320
Period size: 49 Copynumber: 9.5 Consensus size: 48
628912 GTCTGATATG
628922 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
1 GCTGGCCTTGAATCAGCATATTGGCA-CTTTATCTTTAAGACCAATGTC
* * *
628971 GCTGG-CTTAGAATCAGCACATTGG--C---A----TAAGCCCAATATC
1 GCTGGCCTT-GAATCAGCATATTGGCACTTTATCTTTAAGACCAATGTC
*
629010 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACTAATGTC
1 GCTGGCCTTGAATCAGCATATTGGCA-CTTTATCTTTAAGACCAATGTC
* * * * *
629059 ACTAGCCTTGAATCAGCACATTGG--C---A----TAAGCCCAATATC
1 GCTGGCCTTGAATCAGCATATTGGCACTTTATCTTTAAGACCAATGTC
* * * * *
629098 ACTGGCCTTGAATCAACATATTGGCACCTTGTCTTTAGGACCAATGTC
1 GCTGGCCTTGAATCAGCATATTGGCACTTTATCTTTAAGACCAATGTC
* * *
629146 GCTGGCCTTGAATCAGCATATTGGCACTTTCATCTTTATGTCCAATATC
1 GCTGGCCTTGAATCAGCATATTGGCACTTT-ATCTTTAAGACCAATGTC
* * * *
629195 GTTGGCCTTGAATCAGCATATTGGCACTTTCATCTTTAAGTCCGATATC
1 GCTGGCCTTGAATCAGCATATTGGCACTTT-ATCTTTAAGACCAATGTC
* * * * *
629244 GTTGGCCTTGAATCAGTATATTGGTATCTTTAACATTTCTAAGCCCAATGTC
1 GCTGGCCTTGAATCAGCATATTGGCA-CTTTATC--TT-TAAGACCAATGTC
* * * * * *
629296 GCTGGTCTT-ATCTCAGCACATTGGCA-TTCT-TCTTCAAGTCTAATGTC
1 GCTGGCCTTGA-ATCAGCATATTGGCACTT-TATCTTTAAGACCAATGTC
* * *
629343 GCTGGACATGAATCAGCACATTG
1 GCTGGCCTTGAATCAGCATATTG
629366 TTATTCTTCG
Statistics
Matches: 317, Mismatches: 49, Indels: 60
0.74 0.12 0.14
Matches are distributed among these distances:
39 61 0.19
40 3 0.01
41 1 0.00
42 1 0.00
43 2 0.01
45 1 0.00
46 2 0.01
47 28 0.09
48 43 0.14
49 136 0.43
50 7 0.02
51 4 0.01
52 28 0.09
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (48 bp):
GCTGGCCTTGAATCAGCATATTGGCACTTTATCTTTAAGACCAATGTC
Found at i:629014 original size:88 final size:88
Alignment explanation
Indices: 628818--629259 Score: 530
Period size: 88 Copynumber: 4.9 Consensus size: 88
628808 TTGCTATCTT
* * * *
628818 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATATC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC-TT--TAAGACCAATGTC
628883 GCTGGCCTTGAATCAGCACATTGGCA
63 GCTGGCCTTGAATCAGCACATTGGCA
** *
628909 TAAGTCTGATATGGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCT
628974 GG-CTTAGAATCAGCACATTGGCA
66 GGCCTT-GAATCAGCACATTGGCA
* * *
628997 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACTAATGTCACT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCT
*
629062 AGCCTTGAATCAGCACATTGGCA
66 GGCCTTGAATCAGCACATTGGCA
* * * * *
629085 TAAGCCCAATATCACTGGCCTTGAATCAACATATTGGCACC-TTGTCTTTAGGACCAATGTCGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCT
*
629149 GGCCTTGAATCAGCATATTGGCA
66 GGCCTTGAATCAGCACATTGGCA
* *
629172 CTTTCATCTTTATGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCA-CTTTCATCTTTAAGT
1 ---T-A-----A-GTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-ATCTTTAAGA
* * *
629236 CCGATATCGTTGGCCTTGAATCAG
55 CCAATGTCGCTGGCCTTGAATCAG
629260 TATATTGGTA
Statistics
Matches: 305, Mismatches: 32, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
87 43 0.14
88 149 0.49
89 3 0.01
90 3 0.01
91 43 0.14
96 2 0.01
97 34 0.11
98 28 0.09
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (88 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCT
GGCCTTGAATCAGCACATTGGCA
Found at i:629023 original size:39 final size:39
Alignment explanation
Indices: 628958--629123 Score: 127
Period size: 39 Copynumber: 4.0 Consensus size: 39
628948 CCTTTATCTT
* *
628958 TAAGACCAATGTCGCTGG-CTTAGAATCAGCACATTGGCA
1 TAAGACCAATATCACTGGCCTT-GAATCAGCACATTGGCA
* * *
628997 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
1 TAAGACCAATATCACTGGCCTTGAATCAGCACATTGG---C---A
* * *
629042 TCTTTAAGACTAATGTCACTAGCCTTGAATCAGCACATTGGCA
1 ----TAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCA
* * *
629085 TAAGCCCAATATCACTGGCCTTGAATCAACATATTGGCA
1 TAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCA
629124 CCTTGTCTTT
Statistics
Matches: 101, Mismatches: 15, Indels: 22
0.73 0.11 0.16
Matches are distributed among these distances:
39 63 0.62
40 3 0.03
42 1 0.01
43 1 0.01
45 1 0.01
46 1 0.01
49 31 0.31
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (39 bp):
TAAGACCAATATCACTGGCCTTGAATCAGCACATTGGCA
Found at i:630118 original size:19 final size:19
Alignment explanation
Indices: 630094--630156 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
630084 AAACAGTAAA
630094 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
630113 TGTATCGAT--ATAA----
1 TGTATCGATACATAAGTGT
630126 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
630145 TGTATTGATACA
1 TGTATCGATACA
630157 ATGTATCACT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 9 0.24
15 4 0.11
17 4 0.11
19 20 0.54
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:630133 original size:32 final size:32
Alignment explanation
Indices: 630092--630163 Score: 126
Period size: 32 Copynumber: 2.2 Consensus size: 32
630082 ACAAACAGTA
*
630092 AATGTATCGATACATAAGTGTTGTATCGATAT
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
630124 AATGTATCGATACATAAGTGTTGTATTGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
630156 AATGTATC
1 AATGTATC
630164 ACTACAATGC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.38
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:630211 original size:20 final size:20
Alignment explanation
Indices: 630186--630242 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
630176 TTGCCAAGGA
630186 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTGA-TC
630206 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
630226 TTTGTATCGATACATTG
1 AATGTATCGATACATTG
630243 TATGGATACA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 33 0.97
21 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:630245 original size:33 final size:33
Alignment explanation
Indices: 630208--630273 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
630198 CATTATTCAA
630208 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCTTTGTATCGATACAT
* *
630241 TGTATGGATACATTGATTTTTGTATCGATACAT
1 TGTATCGATACATTGATCTTTGTATCGATACAT
630274 CTCGGAATTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (33 bp):
TGTATCGATACATTGATCTTTGTATCGATACAT
Found at i:636625 original size:16 final size:16
Alignment explanation
Indices: 636554--636651 Score: 83
Period size: 16 Copynumber: 6.2 Consensus size: 16
636544 GGCAGGTTCA
** *
636554 GGTTCGGGCTCGTTCA
1 GGTTCGGGCTTTTTCG
* *
636570 GGTTTGGGCTCTTTCG
1 GGTTCGGGCTTTTTCG
636586 GGTTC-GGCTTTTT-G
1 GGTTCGGGCTTTTTCG
**
636600 GGTTTAGGCTTTTTCG
1 GGTTCGGGCTTTTTCG
* *
636616 GATTCGGGCTTATTCG
1 GGTTCGGGCTTTTTCG
* *
636632 GGTTTGGGCTTTTTCA
1 GGTTCGGGCTTTTTCG
636648 GGTT
1 GGTT
636652 TGGGTCGGTT
Statistics
Matches: 66, Mismatches: 14, Indels: 4
0.79 0.17 0.05
Matches are distributed among these distances:
14 5 0.08
15 15 0.23
16 46 0.70
ACGTcount: A:0.05, C:0.16, G:0.35, T:0.44
Consensus pattern (16 bp):
GGTTCGGGCTTTTTCG
Found at i:637183 original size:18 final size:19
Alignment explanation
Indices: 637162--637204 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
637152 GTAAGTATGC
* *
637162 TTATAATTT-ATAGTATTT
1 TTATAATTTAATAATAGTT
637180 TTAT-ATTTAATAATAGTT
1 TTATAATTTAATAATAGTT
637198 TTATAAT
1 TTATAAT
637205 CATAAAGAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 4 0.19
18 15 0.71
19 2 0.10
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (19 bp):
TTATAATTTAATAATAGTT
Found at i:637534 original size:156 final size:156
Alignment explanation
Indices: 637345--637656 Score: 493
Period size: 156 Copynumber: 2.0 Consensus size: 156
637335 TTTATAATTT
* * * * * *
637345 CCTTTGGTTATTTAGTATTGTTGTTTTGTACTTGTTTTATCTTTATCCTTAACAAATTATTGAAT
1 CCTTTGGTTATTTAGTATTATTGTATTATACTTGTTTCATCTTTATCCTTAAAAAACTATTGAAT
* * *
637410 GTAGTTCTTGATTGTGCTTTCTAAATTTACTATAACTTTTTTA-CTCGTGGTTAGGTTTGGATAC
66 GTAGTTCTCGATTGTGCTTTCTAAACTTACTATAACTTTTTTATC-CGTAGTTAGGTTTGGATAC
637474 AGATATT-ACTTGATAATATATACTGAG
130 AGATATTGA-TTGATAATATATACTGAG
* *
637501 CCTTTGGTTATTTAGTATTATTGTATTATACTTGTTTCATCTTTATCTTTAAAAAACTGTTGAAT
1 CCTTTGGTTATTTAGTATTATTGTATTATACTTGTTTCATCTTTATCCTTAAAAAACTATTGAAT
637566 GTAGTTCTCGATTGTGCTTTCTAAACTTACTATAACTTTTTTATCCGTAGTTAGGTTTGGATACA
66 GTAGTTCTCGATTGTGCTTTCTAAACTTACTATAACTTTTTTATCCGTAGTTAGGTTTGGATACA
637631 GATATTGATTGATAATATATACTGAG
131 GATATTGATTGATAATATATACTGAG
637657 TTTTAAGGTT
Statistics
Matches: 143, Mismatches: 11, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
156 141 0.99
157 2 0.01
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.48
Consensus pattern (156 bp):
CCTTTGGTTATTTAGTATTATTGTATTATACTTGTTTCATCTTTATCCTTAAAAAACTATTGAAT
GTAGTTCTCGATTGTGCTTTCTAAACTTACTATAACTTTTTTATCCGTAGTTAGGTTTGGATACA
GATATTGATTGATAATATATACTGAG
Found at i:638207 original size:16 final size:16
Alignment explanation
Indices: 638186--638225 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
638176 TTTGGGTCAG
638186 TCTCGGGTTCGGGTTC
1 TCTCGGGTTCGGGTTC
638202 TCTCGGGTTCGGGTTC
1 TCTCGGGTTCGGGTTC
*
638218 TTTCGGGT
1 TCTCGGGT
638226 CTAGGTTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.00, C:0.23, G:0.38, T:0.40
Consensus pattern (16 bp):
TCTCGGGTTCGGGTTC
Found at i:638274 original size:16 final size:16
Alignment explanation
Indices: 638266--638304 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
638256 GTTTGGGCTT
638266 TCTCAGGTTCGAGCTA
1 TCTCAGGTTCGAGCTA
*
638282 TCTCAGGTTCAAGCTA
1 TCTCAGGTTCGAGCTA
*
638298 TTTCAGG
1 TCTCAGG
638305 CTTGGATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (16 bp):
TCTCAGGTTCGAGCTA
Found at i:639377 original size:13 final size:13
Alignment explanation
Indices: 639358--639388 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
639348 ACAATTCTTC
639358 ATGTATCGATACA
1 ATGTATCGATACA
*
639371 TTGTATCGATACA
1 ATGTATCGATACA
639384 ATGTA
1 ATGTA
639389 CCATGTATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:639385 original size:33 final size:33
Alignment explanation
Indices: 639339--639403 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
639329 TTTGAGGCAA
639339 TGTATCAACACAAT-T-CTTCATGTATCGATACAT
1 TGTATCAACACAATGTAC--CATGTATCGATACAT
* *
639372 TGTATCGATACAATGTACCATGTATCGATACA
1 TGTATCAACACAATGTACCATGTATCGATACA
639404 AATAGTGGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (33 bp):
TGTATCAACACAATGTACCATGTATCGATACAT
Found at i:643849 original size:28 final size:28
Alignment explanation
Indices: 643809--643880 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
643799 GGAATAAAGC
** *
643809 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
643837 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
643865 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
643881 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:644053 original size:104 final size:105
Alignment explanation
Indices: 643869--644101 Score: 262
Period size: 104 Copynumber: 2.2 Consensus size: 105
643859 AAATAACGAG
* * *
643869 GTTGGAGTATCCTCGATTGT-GAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCC
1 GTTGGAGTATCCTCGATTGTGGAAAAATTAGTATTTTAGG-AATAAAACCGGAGTTGGAGTATCC
643933 CCGATTAAAGGAAAATTGGCG-TTTTGAAAATAAAACCAGGA
65 CCGATTAAAGGAAAATTGGCGTTTTTGAAAATAAAACC-GGA
* *
643974 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG-ATAAAACCGGAGTTGGAGTATCC
1 GTTGGAGTATCCTCGATTGTGGAAAAATTAGTATTTTAG-GAATAAAACCGGAGTTGGAGTATCC
* * * * *
644037 CTGATTGTGAA-G-AAATTGGTGTTTTTTGGAAATAAAATCGGA
65 CCGA-T-TAAAGGAAAATTGGCG-TTTTTGAAAATAAAACCGGA
* *
644079 GTTAGATTATCCTCGATTGTGGA
1 GTTGGAGTATCCTCGATTGTGGA
644102 GAATTGATAA
Statistics
Matches: 108, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
104 51 0.47
105 20 0.19
106 37 0.34
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32
Consensus pattern (105 bp):
GTTGGAGTATCCTCGATTGTGGAAAAATTAGTATTTTAGGAATAAAACCGGAGTTGGAGTATCCC
CGATTAAAGGAAAATTGGCGTTTTTGAAAATAAAACCGGA
Found at i:644097 original size:54 final size:53
Alignment explanation
Indices: 643869--644104 Score: 236
Period size: 52 Copynumber: 4.5 Consensus size: 53
643859 AAATAACGAG
* * *
643869 GTTGGAGTATCCTCGATTGTGAA-AAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTGGAAATAAAACCGGA
* * *
643921 GTTGGAGTATCCCCGA-T-TAAAGGAAAATTGGCG-TTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATTGTGAA-G-AAATTGGTGTTTTTGGAAATAAAACC-GGA
* *
643974 -TTGGAGTATCCCCGATTGTGGAA-AAATTAGTGTTTTAGCG--ATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAGAAATTGGTGTTTTTG-GAAATAAAACCGGA
* *
644025 GTTGGAGTATCCCTGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTG-TTTTTGGAAATAAAACCGGA
* * * *
644079 GTTAGATTATCCTCGATTGTGGAGAA
1 GTTGGAGTATCCCCGATTGTGAAGAA
644105 TTGATAAACT
Statistics
Matches: 150, Mismatches: 20, Indels: 26
0.77 0.10 0.13
Matches are distributed among these distances:
50 3 0.02
51 7 0.05
52 86 0.57
53 20 0.13
54 32 0.21
55 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (53 bp):
GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTGGAAATAAAACCGGA
Found at i:646481 original size:13 final size:13
Alignment explanation
Indices: 646463--646488 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
646453 ACAAAGATCC
646463 ATGTATCGATACA
1 ATGTATCGATACA
646476 ATGTATCGATACA
1 ATGTATCGATACA
646489 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:646484 original size:33 final size:33
Alignment explanation
Indices: 646442--646508 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
646432 AAAATTTCCA
***
646442 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
646475 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
646508 A
1 A
646509 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:646552 original size:19 final size:18
Alignment explanation
Indices: 646528--646595 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
646518 CAGTAGCTAA
646528 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
646547 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
646562 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
646579 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
646596 TCGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:646568 original size:13 final size:13
Alignment explanation
Indices: 646550--646574 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
646540 ACAATACTTA
646550 TGTATCGATACAT
1 TGTATCGATACAT
646563 TGTATCGATACA
1 TGTATCGATACA
646575 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:646572 original size:32 final size:32
Alignment explanation
Indices: 646531--646593 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
646521 TAGCTAATTA
*
646531 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
646563 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
646594 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:653138 original size:20 final size:20
Alignment explanation
Indices: 653087--653140 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
653077 GTTAGGCTCA
*
653087 ATGTATCGATTCAACACACT
1 ATGTATCGATACAACACACT
* * *
653107 ATATATCAATACAATACA-T
1 ATGTATCGATACAACACACT
653126 CATGTATCGATACAA
1 -ATGTATCGATACAA
653141 AGTGAGTTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (20 bp):
ATGTATCGATACAACACACT
Found at i:656733 original size:55 final size:52
Alignment explanation
Indices: 656673--656784 Score: 136
Period size: 52 Copynumber: 2.1 Consensus size: 52
656663 CGATATTGGG
* *
656673 CTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTAC-ATTGAA
1 CTTAAAGATG-G-AAAAGG-TGCCAACATGCTGATTCAAGGCCAGCT-CTATTGAA
* * *
656728 CTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTCTATTGGA
1 CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTCTATTGAA
656780 CTTAA
1 CTTAA
656785 GGTGCCAATG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
51 1 0.02
52 34 0.67
53 5 0.10
54 1 0.02
55 10 0.20
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (52 bp):
CTTAAAGATGGAAAAGGTGCCAACATGCTGATTCAAGGCCAGCTCTATTGAA
Found at i:656767 original size:52 final size:55
Alignment explanation
Indices: 656636--656784 Score: 162
Period size: 55 Copynumber: 2.8 Consensus size: 55
656626 AAGTGATAAA
* * * * * *
656636 GATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGAAAAAG
* ** * *
656691 GATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG-G-AAAAT
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGAAAAAG
656744 G-TGCCAATATGCTGATTCAAGGCCAGCT-CTATTGGACTTAA
1 GATGCCAATATGCTGATTCAAGGCCAGCTAC-ATTGGACTTAA
656785 GGTGCCAATG
Statistics
Matches: 78, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
51 1 0.01
52 34 0.44
53 5 0.06
54 1 0.01
55 37 0.47
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (55 bp):
GATGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAGAAAAAG
Found at i:656803 original size:42 final size:42
Alignment explanation
Indices: 656744--656826 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
656734 GATGGAAAAT
656744 GTGCCAATATGCTGATTCAAGGCCAGCT-CTATTGGACTTAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCTAC-ATTGGACTTAAG
* *
656786 GTGCCAATGTGCTGATTCAAGGTCAGCTACATTGGACTTAA
1 GTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAA
656827 ATATGAAGGC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 37 0.97
43 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (42 bp):
GTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAG
Found at i:657034 original size:30 final size:30
Alignment explanation
Indices: 656947--657205 Score: 223
Period size: 30 Copynumber: 8.8 Consensus size: 30
656937 AGGTTTGCAT
*
656947 CACTGACTTGTGGGCTTTT--AAAGGTTGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
*
656975 CACTGACTTGTGGGCTTTT--AAAGGTTGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
657003 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
* ** *
657033 CACTAACTTGTGGGCTTAAAAAGAAAAAGAGTGC
1 CACTGACTTGTGGGCTT---TTG-AAAAGGGTGC
* * * * * *
657067 TACAGAGTTGTGAGCTTTGGAAAAGAG-GC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
* * *
657096 CGCCGACTTGTGGGC-TTCGAAAAAGGGTGC
1 CACTGACTTGTGGGCTTTTG-AAAAGGGTGC
*
657126 CACTGACTTGTGGGC-TTTG--AAGGTTGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
* ***
657153 CACTAACTTGTGGGCTTTTGAAAAAAATGC
1 CACTGACTTGTGGGCTTTTGAAAAGGGTGC
657183 CACTGACTTGTGGGC-TTTGAAAA
1 CACTGACTTGTGGGCTTTTGAAAA
657206 AAAAAATGCC
Statistics
Matches: 192, Mismatches: 28, Indels: 21
0.80 0.12 0.09
Matches are distributed among these distances:
27 21 0.11
28 54 0.28
29 26 0.14
30 68 0.35
31 1 0.01
33 1 0.01
34 21 0.11
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (30 bp):
CACTGACTTGTGGGCTTTTGAAAAGGGTGC
Found at i:658679 original size:1 final size:1
Alignment explanation
Indices: 658675--658785 Score: 96
Period size: 1 Copynumber: 111.0 Consensus size: 1
658665 CCGGACCCCC
* * * * * ** * *
658675 TTTTTTTGTTTTTGTTTGTTTTTTTTTTTGTTTTTGTTTTTGGTTTTTTTTTTGTTTTTTTTTTG
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * ** *
658740 TTTTTTTTGTTTTTTTTGTTTTTTTTGGTTTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
658786 GAGGACGCCG
Statistics
Matches: 86, Mismatches: 24, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 86 1.00
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (1 bp):
T
Found at i:658696 original size:18 final size:17
Alignment explanation
Indices: 658677--658785 Score: 118
Period size: 16 Copynumber: 6.4 Consensus size: 17
658667 GGACCCCCTT
*
658677 TTTTTGTTTTTGTTTGT-
1 TTTTT-TTTTTGTTTTTG
658694 TTTTTTTTTTGTTTTTG
1 TTTTTTTTTTGTTTTTG
658711 TTTTTGGTTTTT-TTTTTG
1 TTTTT--TTTTTGTTTTTG
*
658729 TTTTTTTTTTGTTTTTT
1 TTTTTTTTTTGTTTTTG
658746 TTGTTTTTTTTGTTTTT-
1 TT-TTTTTTTTGTTTTTG
**
658763 TTTGGTTTTT-TTTTTG
1 TTTTTTTTTTGTTTTTG
658779 TTTTTTT
1 TTTTTTT
658786 GAGGACGCCG
Statistics
Matches: 80, Mismatches: 6, Indels: 13
0.81 0.06 0.13
Matches are distributed among these distances:
15 5 0.06
16 26 0.32
17 19 0.24
18 25 0.31
19 5 0.06
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (17 bp):
TTTTTTTTTTGTTTTTG
Found at i:658708 original size:29 final size:28
Alignment explanation
Indices: 658675--658785 Score: 145
Period size: 28 Copynumber: 3.9 Consensus size: 28
658665 CCGGACCCCC
658675 TTTTTTTGTTTTTGTTTGTTTTTTTTTT
1 TTTTTTTGTTTTTGTTTGTTTTTTTTTT
*
658703 TGTTTTTGTTTTTGGTTT-TTTTTTTGTTT
1 TTTTTTTGTTTTT-GTTTGTTTTTTT-TTT
658732 TTTTTTTGTTTTT-TTTGTTTTTTTTGTT
1 TTTTTTTGTTTTTGTTTGTTTTTTTT-TT
* *
658760 TTTTTTGGTTTTTTTTTTGTTTTTTT
1 TTTTTTTG-TTTTTGTTTGTTTTTTT
658786 GAGGACGCCG
Statistics
Matches: 74, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
27 4 0.05
28 35 0.47
29 24 0.32
30 11 0.15
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (28 bp):
TTTTTTTGTTTTTGTTTGTTTTTTTTTT
Found at i:658765 original size:50 final size:47
Alignment explanation
Indices: 658675--658785 Score: 163
Period size: 50 Copynumber: 2.3 Consensus size: 47
658665 CCGGACCCCC
*
658675 TTTTTTTG-TTTTTGTTTGTTTTTTTTTTTGTTTTTGTTTTTGGTTT
1 TTTTTTTGTTTTTTTTTTGTTTTTTTTTTTGTTTTTGTTTTTGGTTT
658721 TTTTTTTGTTTTTTTTTTGTTTTTTTTGTTT-TTTTTGTTTTTTTTGGTTT
1 TTTTTTTGTTTTTTTTTTGTTTTTTTT-TTTGTTTTTG---TTTTTGGTTT
658771 TTTTTTTGTTTTTTT
1 TTTTTTTGTTTTTTT
658786 GAGGACGCCG
Statistics
Matches: 59, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
46 8 0.14
47 23 0.39
48 3 0.05
50 25 0.42
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (47 bp):
TTTTTTTGTTTTTTTTTTGTTTTTTTTTTTGTTTTTGTTTTTGGTTT
Found at i:662451 original size:13 final size:13
Alignment explanation
Indices: 662433--662458 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
662423 CAATTTTTTG
662433 TGTATCGATACAT
1 TGTATCGATACAT
662446 TGTATCGATACAT
1 TGTATCGATACAT
662459 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:665002 original size:13 final size:13
Alignment explanation
Indices: 664984--665009 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
664974 ATAATCACCC
664984 TGTATCGATACAA
1 TGTATCGATACAA
664997 TGTATCGATACAA
1 TGTATCGATACAA
665010 AAAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:665049 original size:20 final size:20
Alignment explanation
Indices: 664995--665094 Score: 110
Period size: 20 Copynumber: 4.8 Consensus size: 20
664985 GTATCGATAC
* *
664995 AATGTATCGATACAAAAAAA
1 AATGTATCGATACATAGAAA
665015 AATGTATCGATACATAGAAA
1 AATGTATCGATACATAGAAA
665035 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACATAGAA-----A
* *
665060 GATGTATCGATACACAGAAA
1 AATGTATCGATACATAGAAA
*
665080 CATGTATCGATACAT
1 AATGTATCGATACAT
665095 TTTGGACATT
Statistics
Matches: 69, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
20 51 0.74
25 18 0.26
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (20 bp):
AATGTATCGATACATAGAAA
Found at i:668948 original size:21 final size:21
Alignment explanation
Indices: 668919--668963 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
668909 AAGTTTTCAT
*
668919 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
668939 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
668961 TTT
1 TTT
668964 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:671199 original size:13 final size:13
Alignment explanation
Indices: 671181--671206 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
671171 CAATTTTTTG
671181 TGTATCGATACAT
1 TGTATCGATACAT
671194 TGTATCGATACAT
1 TGTATCGATACAT
671207 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:678399 original size:10 final size:10
Alignment explanation
Indices: 678384--678410 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
678374 ATGTATCAAG
678384 CAAAAACAAA
1 CAAAAACAAA
678394 CAAAAACAAA
1 CAAAAACAAA
678404 CAAAAAC
1 CAAAAAC
678411 TTAGTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAACAAA
Found at i:682407 original size:19 final size:19
Alignment explanation
Indices: 682383--682452 Score: 95
Period size: 19 Copynumber: 3.6 Consensus size: 19
682373 ATAACTCAAT
682383 ATGTATCGATACCAAGAAC
1 ATGTATCGATACCAAGAAC
* *
682402 ATGTATCGACACCATGAAC
1 ATGTATCGATACCAAGAAC
* *
682421 ATGTATCGATACTAAGCAAT
1 ATGTATCGATACCAAG-AAC
682441 ATGTATCGATAC
1 ATGTATCGATAC
682453 ATCTAGGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
19 30 0.68
20 14 0.32
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.26
Consensus pattern (19 bp):
ATGTATCGATACCAAGAAC
Found at i:688904 original size:93 final size:92
Alignment explanation
Indices: 688740--688924 Score: 307
Period size: 93 Copynumber: 2.0 Consensus size: 92
688730 ATTGGGATCC
** *
688740 TTCGACTCTTCAATTGCCATCACTTTGGCTTCCCAAGACTTAGGGAGGCTATTGAAGAGCTTCTT
1 TTCGACTCTTCAATTGCCATCACTTTGGCTTCCCAAGACTTAAAGAGGCTATTAAAGAGCTTCTT
688805 AACCATCTCCTTATTTGGATAGGTCTT
66 AACCATCTCCTTATTTGGATAGGTCTT
*
688832 TTCGAGCTCTTCAATTGCCATTACTTTGGCTTCCCAAGACTTAAAGAGGCTATTAAAGAGCTTCT
1 TTCGA-CTCTTCAATTGCCATCACTTTGGCTTCCCAAGACTTAAAGAGGCTATTAAAGAGCTTCT
* *
688897 TGACCATCTCTTTATTTGGATAGGTCTT
65 TAACCATCTCCTTATTTGGATAGGTCTT
688925 CCCGAGTGCT
Statistics
Matches: 86, Mismatches: 6, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
92 5 0.06
93 81 0.94
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.37
Consensus pattern (92 bp):
TTCGACTCTTCAATTGCCATCACTTTGGCTTCCCAAGACTTAAAGAGGCTATTAAAGAGCTTCTT
AACCATCTCCTTATTTGGATAGGTCTT
Found at i:690437 original size:32 final size:33
Alignment explanation
Indices: 690393--690457 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
690383 TTAACTTAAT
* *
690393 ATGTATCGATACTAAG-AACATGTATCGATACA
1 ATGTATCAATACTAAGTAACATGTATCAATACA
*
690425 ATGTATCAATACTAAGTAATATGTATCAATACA
1 ATGTATCAATACTAAGTAACATGTATCAATACA
690458 TCTGGGTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (33 bp):
ATGTATCAATACTAAGTAACATGTATCAATACA
Found at i:694135 original size:29 final size:27
Alignment explanation
Indices: 694103--694190 Score: 68
Period size: 29 Copynumber: 3.0 Consensus size: 27
694093 TTACATCAAA
*
694103 GTCCTTAGATCATGAAAAATGACCTAAAT
1 GTCCATAGATCATG-AAAATG-CCTAAAT
* * * *
694132 GTCCCTAGCATACATGAAATTGCATAAAA
1 GTCCATAG-AT-CATGAAAATGCCTAAAT
*
694161 GTTCATAGATCATGGAAAATGGCCTAAAT
1 GTCCATAGATCAT-GAAAAT-GCCTAAAT
694190 G
1 G
694191 ACATAAAAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
27 3 0.07
28 7 0.15
29 25 0.54
30 7 0.15
31 4 0.09
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (27 bp):
GTCCATAGATCATGAAAATGCCTAAAT
Found at i:694248 original size:57 final size:57
Alignment explanation
Indices: 694186--694377 Score: 219
Period size: 58 Copynumber: 3.4 Consensus size: 57
694176 AAAATGGCCT
* *
694186 AAATGACATAAAAATGCATGAAATGTCAT-GAAATTCGTAAGTCATGAAAAATTATTA
1 AAATGACATAAAAATGCATGAAATGTCATAAAAATTCCTAAGTCATGAAAAA-TATTA
* * * * *
694243 AAATGATATAAAAATGCATGAAATGTCATAAAAATTCCCAAATTATGAAAAATAACTA
1 AAATGACATAAAAATGCATGAAATGTCATAAAAATTCCTAAGTCATGAAAAAT-ATTA
* * *
694301 AAATAACA-AAGAAACGCATGAAATGTCATAAAAATTCCTTAGTCATGGAAAAA-ATTA
1 AAATGACATAA-AAATGCATGAAATGTCATAAAAATTCCTAAGTCAT-GAAAAATATTA
* *
694358 AAATGGCATAAAAAAGCATG
1 AAATGACATAAAAATGCATG
694378 CCTTATGTAG
Statistics
Matches: 112, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
57 48 0.43
58 58 0.52
59 6 0.05
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.24
Consensus pattern (57 bp):
AAATGACATAAAAATGCATGAAATGTCATAAAAATTCCTAAGTCATGAAAAATATTA
Found at i:708698 original size:21 final size:21
Alignment explanation
Indices: 708658--708713 Score: 69
Period size: 23 Copynumber: 2.6 Consensus size: 21
708648 GGCGTCTTCC
*
708658 ACAAAAA-AAAGAGAAAAAAATA
1 ACAAAAACAAAAAG-AAAAAA-A
708680 ACAAAAAACAAAAAGAAAAAAA
1 AC-AAAAACAAAAAGAAAAAAA
708702 ACAAAAACAAAA
1 ACAAAAACAAAA
708714 CAACAAAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
21 10 0.32
22 5 0.16
23 11 0.35
24 5 0.16
ACGTcount: A:0.84, C:0.09, G:0.05, T:0.02
Consensus pattern (21 bp):
ACAAAAACAAAAAGAAAAAAA
Found at i:708700 original size:26 final size:29
Alignment explanation
Indices: 708658--708723 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 29
708648 GGCGTCTTCC
* * *
708658 ACAAAAAAAAG-AGAAAAA-AATAACAAA
1 ACAACAAAAAGAAAAAAAACAAAAACAAA
708685 A-AACAAAAAGAAAAAAAACAAAAACAAA
1 ACAACAAAAAGAAAAAAAACAAAAACAAA
708713 ACAACAAAAAG
1 ACAACAAAAAG
708724 GTCCGGATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 8 0.24
27 7 0.21
28 9 0.27
29 9 0.27
ACGTcount: A:0.82, C:0.11, G:0.06, T:0.02
Consensus pattern (29 bp):
ACAACAAAAAGAAAAAAAACAAAAACAAA
Found at i:708701 original size:14 final size:15
Alignment explanation
Indices: 708682--708723 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
708672 AAAAAATAAC
708682 AAAAAACAAAAAGAA
1 AAAAAACAAAAAGAA
*
708697 AAAAAACAAAAA-CA
1 AAAAAACAAAAAGAA
*
708711 AAACAACAAAAAG
1 AAAAAACAAAAAG
708724 GTCCGGATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.83, C:0.12, G:0.05, T:0.00
Consensus pattern (15 bp):
AAAAAACAAAAAGAA
Found at i:708722 original size:22 final size:23
Alignment explanation
Indices: 708672--708713 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
708662 AAAAAAGAGA
708672 AAAAAATAACAAAAAACAAAAAG
1 AAAAAATAACAAAAAACAAAAAG
708695 AAAAAA-AAC-AAAAACAAAA
1 AAAAAATAACAAAAAACAAAA
708714 CAACAAAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 10 0.53
22 3 0.16
23 6 0.32
ACGTcount: A:0.86, C:0.10, G:0.02, T:0.02
Consensus pattern (23 bp):
AAAAAATAACAAAAAACAAAAAG
Found at i:709786 original size:37 final size:37
Alignment explanation
Indices: 709745--709829 Score: 161
Period size: 37 Copynumber: 2.3 Consensus size: 37
709735 TGCCACAATC
709745 ATGCATTTGTGACATTCATAACATTTCATTTTGCATG
1 ATGCATTTGTGACATTCATAACATTTCATTTTGCATG
*
709782 ATGCATTTGTGACATTTATAACATTTCATTTTGCATG
1 ATGCATTTGTGACATTCATAACATTTCATTTTGCATG
709819 ATGCATTTGTG
1 ATGCATTTGTG
709830 CTTCATCTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (37 bp):
ATGCATTTGTGACATTCATAACATTTCATTTTGCATG
Found at i:710349 original size:28 final size:28
Alignment explanation
Indices: 710194--710559 Score: 445
Period size: 29 Copynumber: 12.9 Consensus size: 28
710184 CCTCACCTTC
*
710194 CAAAGCCCACAAGTCAGTGGCATCTTTT
1 CAAAGCCCACAAGTCAGTGGCACCTTTT
* * *
710222 CCAAAGCCCACAAGTTAGTGACATCTTTT
1 -CAAAGCCCACAAGTCAGTGGCACCTTTT
* * * *
710251 CAAAAGCCTACAAATTAGTGGCATCTTTT
1 C-AAAGCCCACAAGTCAGTGGCACCTTTT
* *
710280 CAAAAGCCTATAAGTCAGTGGCACCCTTTT
1 C-AAAGCCCACAAGTCAGTGGCA-CCTTTT
* *
710310 CAAAGCCTACAAGTCAGTGGCATCTTTT
1 CAAAGCCCACAAGTCAGTGGCACCTTTT
*
710338 CAAAGCCCACAATTCAGTGGCAACC--TT
1 CAAAGCCCACAAGTCAGTGGC-ACCTTTT
*
710365 CAAAGCCCACAAGTCAGTGGCACCCTTT
1 CAAAGCCCACAAGTCAGTGGCACCTTTT
*
710393 CAAAGCCCACAAGAT-AGTGGCATCTTTT
1 CAAAGCCCACAAG-TCAGTGGCACCTTTT
710421 CAAAAGCCCACAAGTCAGTGGCACCTTTT
1 C-AAAGCCCACAAGTCAGTGGCACCTTTT
*
710450 CAAAGCCCACAATTCAGTGGCAACC--TT
1 CAAAGCCCACAAGTCAGTGGC-ACCTTTT
* *
710477 CAAAGCTCACAAGTCAGTGGCACCCTTT
1 CAAAGCCCACAAGTCAGTGGCACCTTTT
710505 CAAAGCCCACAAGTCAGTGGCACCTTTT
1 CAAAGCCCACAAGTCAGTGGCACCTTTT
*
710533 CAAAGCGCACAAGTCAGTGGCAACCTT
1 CAAAGCCCACAAGTCAGTGGC-ACCTT
710560 CGAAGCCTAC
Statistics
Matches: 301, Mismatches: 24, Indels: 24
0.86 0.07 0.07
Matches are distributed among these distances:
26 6 0.02
27 43 0.14
28 120 0.40
29 126 0.42
30 6 0.02
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (28 bp):
CAAAGCCCACAAGTCAGTGGCACCTTTT
Found at i:710434 original size:112 final size:111
Alignment explanation
Indices: 710194--710554 Score: 501
Period size: 112 Copynumber: 3.2 Consensus size: 111
710184 CCTCACCTTC
* * *
710194 CAAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTT-AGTGACATCTTTTCAAAAGC
1 CAAAGCCCACAAGTCAGTGGCATCTTTT-CAAAGCCCACAA-TTCAGTGGCAAC-CTTC-AAAGC
* * * * * * *
710258 CTACAAATTAGTGGCATCTTTTCAAAAGCCTATAAGTCAGTGGCACCCTTTT
62 CCACAAGTCAGTGGCACCCTTTC-AAAGCCCACAAGTCAGTGGCA-CCTTTT
*
710310 CAAAGCCTACAAGTCAGTGGCATCTTTTCAAAGCCCACAATTCAGTGGCAACCTTCAAAGCCCAC
1 CAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAATTCAGTGGCAACCTTCAAAGCCCAC
*
710375 AAGTCAGTGGCACCCTTTCAAAGCCCACAAGAT-AGTGGCATCTTTT
66 AAGTCAGTGGCACCCTTTCAAAGCCCACAAG-TCAGTGGCACCTTTT
* *
710421 CAAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAATTCAGTGGCAACCTTCAAAGCTCA
1 C-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAATTCAGTGGCAACCTTCAAAGCCCA
710486 CAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTT
65 CAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTT
*
710533 CAAAGCGCACAAGTCAGTGGCA
1 CAAAGCCCACAAGTCAGTGGCA
710555 ACCTTCGAAG
Statistics
Matches: 224, Mismatches: 17, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
111 27 0.12
112 122 0.54
113 24 0.11
114 5 0.02
115 19 0.08
116 27 0.12
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (111 bp):
CAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAATTCAGTGGCAACCTTCAAAGCCCAC
AAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTT
Found at i:710593 original size:55 final size:55
Alignment explanation
Indices: 710188--710590 Score: 393
Period size: 55 Copynumber: 7.2 Consensus size: 55
710178 AACATTCCTC
* * * *
710188 ACCTTCCAAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTTAGTGACA
1 ACCTT-CAAAGCCCACAAGTCAGTGGCAACCTTT-CAAAGCCCACAAGTCAGTGGCA
* * * * * * * * *
710245 TCTTTTCAAAAGCCTACAAATTAGTGGCATCTTTTCAAAAGCCTATAAGTCAGTGGCA
1 AC-CTTC-AAAGCCCACAAGTCAGTGGCAACCTTTC-AAAGCCCACAAGTCAGTGGCA
* * * * *
710303 CCCTTTTCAAAGCCTACAAGTCAGTGGCATCTTTTCAAAGCCCACAATTCAGTGGCA
1 ACC--TTCAAAGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTCAGTGGCA
*
710360 ACCTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGAT-AGTGGCA
1 ACCTTCAAAGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAG-TCAGTGGCA
* * *
710415 TCTTTTCAAAAGCCCACAAGTCAGTGGC-ACCTTTTCAAAGCCCACAATTCAGTGGCA
1 AC-CTTC-AAAGCCCACAAGTCAGTGGCAACC-TTTCAAAGCCCACAAGTCAGTGGCA
* *
710472 ACCTTCAAAGCTCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGC-
1 ACCTTCAAAGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
710526 ACCTTTTCAAAGCGCACAAGTCAGTGGCAACC-TTCGAAGCCTACAAGGT-AGTGGTA
1 ACC--TTCAAAGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAA-GTCAGTGGCA
710582 ACCTTCAAA
1 ACCTTCAAA
710591 AGCACATAAG
Statistics
Matches: 296, Mismatches: 35, Indels: 33
0.81 0.10 0.09
Matches are distributed among these distances:
54 9 0.03
55 106 0.36
56 42 0.14
57 66 0.22
58 70 0.24
59 3 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (55 bp):
ACCTTCAAAGCCCACAAGTCAGTGGCAACCTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:710619 original size:83 final size:83
Alignment explanation
Indices: 710194--710593 Score: 382
Period size: 83 Copynumber: 4.7 Consensus size: 83
710184 CCTCACCTTC
* * * * * * *
710194 CAAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTTAGTGACATCTTTTCAAAAGCC
1 CAAAGCCCACAAGTCAGTGGCAAC-CTT-CAAAGCCTACAAGGTAGTGGCAAC-CTTCAAAAGCC
* * * *
710259 TACAAATTAGTGGCATCTTTT
63 CACAAGTCAGTGGCACCTTTT
* * * * *
710280 CAAAAGCCTATAAGTCAGTGGCACCCTTTTCAAAGCCTACAA-GTCAGTGGCATCTTTTC-AAAG
1 C-AAAGCCCACAAGTCAGTGGCAACC--TTCAAAGCCTACAAGGT-AGTGGCAAC-CTTCAAAAG
*
710343 CCCACAATTCAGTGGCAACC--TT
61 CCCACAAGTCAGTGGC-ACCTTTT
* * * * *
710365 CAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGATAGTGGCATCTTTTCAAAAGCCC
1 CAAAGCCCACAAGTCAGTGGCAACC-TTCAAAGCCTACAAGGTAGTGGCAAC-CTTCAAAAGCCC
710430 ACAAGTCAGTGGCACCTTTT
64 ACAAGTCAGTGGCACCTTTT
* *
710450 CAAAGCCCACAATTCAGTGGCAACCTTCAAAG-CTCACAA-GTCAGTGGCACCCTTTC-AAAGCC
1 CAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCT-ACAAGGT-AGTGGCAACC-TTCAAAAGCC
710512 CACAAGTCAGTGGCACCTTTT
63 CACAAGTCAGTGGCACCTTTT
* * *
710533 CAAAGCGCACAAGTCAGTGGCAACCTTCGAAGCCTACAAGGTAGTGGTAACCTTCAAAAGC
1 CAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCTACAAGGTAGTGGCAACCTTCAAAAGC
710594 ACATAAGTTG
Statistics
Matches: 272, Mismatches: 27, Indels: 33
0.82 0.08 0.10
Matches are distributed among these distances:
82 3 0.01
83 106 0.39
84 68 0.25
85 28 0.10
86 19 0.07
87 46 0.17
88 2 0.01
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (83 bp):
CAAAGCCCACAAGTCAGTGGCAACCTTCAAAGCCTACAAGGTAGTGGCAACCTTCAAAAGCCCAC
AAGTCAGTGGCACCTTTT
Found at i:710623 original size:112 final size:109
Alignment explanation
Indices: 710194--710619 Score: 423
Period size: 112 Copynumber: 3.8 Consensus size: 109
710184 CCTCACCTTC
* * * * *
710194 CAAAGCCCACAAGTCAGTGGCATCTTTTCCAAAGCCCACAAGTT-AGTGACATCTTTTCAAAAGC
1 CAAAG-CCACAAGTCAGTGGCAAC-CTT-CAAAGCCCACAA-TTCAGTGGCAAC-CTTC-AAAGC
* * * * * *
710258 -CTACAAATTAGTGGCATCTTTTCAAAAGCCTATAAGTCAGTGGCACCCTTTT
60 AC-ACAAGTCAGTGGCACCCTTTC-AAAGCCCACAAGTCAGTGGCA-CCTTTT
* * *
710310 CAAAGCCTACAAGTCAGTGGCATCTTTTCAAAGCCCACAATTCAGTGGCAACCTTCAAAGCCCAC
1 CAAAGCC-ACAAGTCAGTGGCAAC-CTTCAAAGCCCACAATTCAGTGGCAACCTTCAAAGCACAC
*
710375 AAGTCAGTGGCACCCTTTCAAAGCCCACAAGAT-AGTGGCATCTTTT
64 AAGTCAGTGGCACCCTTTCAAAGCCCACAAG-TCAGTGGCACCTTTT
*
710421 CAAAAGCCCACAAGTCAGTGGC-ACCTTTTCAAAGCCCACAATTCAGTGGCAACCTTCAAAGCTC
1 C-AAAG-CCACAAGTCAGTGGCAACC--TTCAAAGCCCACAATTCAGTGGCAACCTTCAAAGCAC
710485 ACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTT
62 ACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTT
* * * *
710533 CAAAGCGCACAAGTCAGTGGCAACCTTCGAAGCCTACAAGGT-AGTGGTAACCTTCAAAAGCACA
1 CAAAGC-CACAAGTCAGTGGCAACCTTCAAAGCCCACAA-TTCAGTGGCAACCTTC-AAAGCACA
* **
710597 TAAGTTGGT-GCAACCCTTTCAAA
63 CAAGTCAGTGGC-ACCCTTTCAAA
710620 AGCCTACACA
Statistics
Matches: 274, Mismatches: 22, Indels: 33
0.83 0.07 0.10
Matches are distributed among these distances:
110 27 0.10
111 51 0.19
112 119 0.43
113 25 0.09
114 6 0.02
115 21 0.08
116 25 0.09
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (109 bp):
CAAAGCCACAAGTCAGTGGCAACCTTCAAAGCCCACAATTCAGTGGCAACCTTCAAAGCACACAA
GTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTT
Found at i:710691 original size:21 final size:21
Alignment explanation
Indices: 710667--710734 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
710657 ATATCACTAG
710667 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
* *
710688 CCTTTAAGTCTA--ATGTT-GCTA
1 CCTTGAA-TC-AGCATATTGGC-A
*
710709 GCCTTGAATCAGCACATTGGCA
1 -CCTTGAATCAGCATATTGGCA
710731 CCTT
1 CCTT
710735 CATCTTTAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
20 3 0.09
21 17 0.49
22 12 0.34
23 3 0.09
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:710696 original size:43 final size:44
Alignment explanation
Indices: 710649--710781 Score: 151
Period size: 49 Copynumber: 2.9 Consensus size: 44
710639 CATCTTCTTC
* *
710649 TAAGTCCAATATCACTAGCCTTGAATCAGCATATTGGCAC-CTT
1 TAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCACACTT
* * *
710692 TAAGTCTAATGTTGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCA----CA-CTT
* *
710741 TAAGTCTAATATCGCTAGCCGTGAATCAACATATTGGCACA
1 TAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCACA
710782 TTTGTCATCT
Statistics
Matches: 74, Mismatches: 10, Indels: 10
0.79 0.11 0.11
Matches are distributed among these distances:
43 34 0.46
45 2 0.03
47 1 0.01
49 37 0.50
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (44 bp):
TAAGTCTAATATCGCTAGCCTTGAATCAGCATATTGGCACACTT
Found at i:710700 original size:49 final size:48
Alignment explanation
Indices: 710647--711094 Score: 221
Period size: 52 Copynumber: 9.0 Consensus size: 48
710637 GGCATCTTCT
*
710647 TCTAAGTCCAATATCACTAGCCTTGAATCAGCATATTGGCACCTTTAA
1 TCTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTAA
* * *
710695 GTCTAA-T---GT-T-GCTAGCCTTGAATCAGCACATTGGCACC-TTCA
1 -TCTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTAA
* * * * *
710737 TCTTTAAGTCTAATATCGCTAGCCGTGAATCAACATATTGGCACATTTGTCA
1 TC--TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCAC-CTT-TAA
* * * * *
710789 TCTTTAAGTCCAATATCGTTGGGCTTGAATCAGCATATTGGCGCCTTTGTCA
1 TC--TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACC-TT-TAA
* * * * * * *
710841 TCTTTAAGTCCAATGTCGCTGGCCTAGAATCAACATATTAGCACCTTCACC
1 TC--TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTA-A
* * * * * *
710892 TTTAAGTCCAAAATCACTGGCCTTGAATCAGCATATTGGCATCTGTAACA
1 TCTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCT-TTA-A
** * * * * *
710942 TTCCTAAAACCAATGTCGCTGGCCTTAAATCAGCATATTGGCATTCTTCTCA
1 -T-CTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCA-CCTT-TAA
* * * * * *
710994 TCTTCAAGTCTAATGTCGCT-GACCGTGAATCAGCACATTGACATTCTTTACA
1 TC-T-AAGTCCAATATCGCTAG-CCTTGAATCAGCATATTGGCA-CCTTTA-A
* *
711046 TCTTTAAGCCCAATATCGCTGGTCC-TGAATCAGCATATTGGCACCTTTA
1 TC--TAAGTCCAATATCGCTAG-CCTTGAATCAGCATATTGGCACCTTTA
711095 TCACTCTTCT
Statistics
Matches: 314, Mismatches: 61, Indels: 46
0.75 0.14 0.11
Matches are distributed among these distances:
41 2 0.01
42 3 0.01
43 29 0.09
44 2 0.01
45 1 0.00
47 1 0.00
48 2 0.01
49 64 0.20
50 4 0.01
51 14 0.04
52 184 0.59
53 8 0.03
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (48 bp):
TCTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTAA
Found at i:710818 original size:52 final size:51
Alignment explanation
Indices: 710689--711089 Score: 287
Period size: 52 Copynumber: 7.8 Consensus size: 51
710679 ATATTGGCAC
* * * * * * *
710689 CTTTAAGTCTAATGTTGCTAGCCTTGAATCAGCACATTGGCAC-CT-TCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACTTTGTCAT
* * *
710738 CTTTAAGTCTAATATCGCTAGCCGTGAATCAACATATTGGCACATTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCAC-TTTGTCAT
* * * *
710790 CTTTAAGTCCAATATCGTTGGGCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGC-ACTTTGTCAT
* * * * *
710842 CTTTAAGTCCAATGTCGCTGGCCTAGAATCAACATATTAGCAC-CT-TCAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACTTTGTCAT
* * * *
710891 CTTTAAGTCCAAAATCACTGGCCTTGAATCAGCATATTGGCA-TCTGTAACAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACTTTGT--CAT
* ** * * * * *
710943 -TCCTAAAACCAATGTCGCTGGCCTTAAATCAGCATATTGGCATTCTTCTCAT
1 CT-TTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACT-TTGTCAT
* * * * * * * * *
710995 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATTCTTT-ACAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCA--CTTTGTCAT
* *
711047 CTTTAAGCCCAATATCGCTGGTCC-TGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATCGCTGG-CCTTGAATCAACATATTGGCAC
711090 CTTTATCACT
Statistics
Matches: 280, Mismatches: 57, Indels: 29
0.77 0.16 0.08
Matches are distributed among these distances:
49 79 0.28
50 3 0.01
51 3 0.01
52 185 0.66
53 7 0.03
54 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (51 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACTTTGTCAT
Found at i:710875 original size:104 final size:101
Alignment explanation
Indices: 710689--711089 Score: 337
Period size: 101 Copynumber: 3.9 Consensus size: 101
710679 ATATTGGCAC
* * * * *
710689 CTTTAAGTCTAATGTTGCTAGCCTTGAATCAGCACATTGGCACC-TT-CATCTTTAAGTCTAATA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACATCTTTAAGTCCAATA
*
710752 TCGCTAGCCGTGAATCAACATATTGGCACATTTGTCAT
66 TCGCTGGCCGTGAATCAACATATTGGCAC-TTT-TCAT
* * * * *
710790 CTTTAAGTCCAATATCGTTGGGCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT-ACATCTTTAAGTCCAAT
* * * *
710855 GTCGCTGGCC-TAGAATCAACATATTAGCAC-CTTCAC
65 ATCGCTGGCCGT-GAATCAACATATTGGCACTTTTCAT
* * * * * * **
710891 CTTTAAGTCCAAAATCACTGGCCTTGAATCAGCATATTGGCATCTGTAACAT-TCCTAAAACCAA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCT-TTACATCT-TTAAGTCCAA
* * * * *
710955 TGTCGCTGGCCTTAAATCAGCATATTGGCATTCTTCTCAT
64 TATCGCTGGCCGTGAATCAACATATTGGCA--CTTTTCAT
* * * * * * * *
710995 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATTCTTTACATCTTTAAGCCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTTTACATCTTTAAGTCCAAT
*
711060 ATCGCTGGTCC-TGAATCAGCATATTGGCAC
65 ATCGCTGG-CCGTGAATCAACATATTGGCAC
711090 CTTTATCACT
Statistics
Matches: 241, Mismatches: 46, Indels: 25
0.77 0.15 0.08
Matches are distributed among these distances:
100 1 0.00
101 113 0.47
102 6 0.02
103 2 0.01
104 113 0.47
105 6 0.02
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (101 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTTACATCTTTAAGTCCAATA
TCGCTGGCCGTGAATCAACATATTGGCACTTTTCAT
Found at i:710973 original size:153 final size:148
Alignment explanation
Indices: 710689--711088 Score: 390
Period size: 153 Copynumber: 2.6 Consensus size: 148
710679 ATATTGGCAC
* * *
710689 CTTTAAGTCTAATGTTGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAATATC
1 CTTTAAGTCTAATGTCGCTGGCC-TGAATCAGCACATT-GCACCTTCATCTTTAAGTCCAATATC
* * * * ** * * *
710754 GCTAGCCGTGAATCAACATATTGGCACATTTGTCATCTTTAAGTCCAATATCGTTGGGCTTGAAT
64 GCTGGCC-TGAATCAGCATATTGG--CATCTGTCATCTCTAAAACCAATATCGCTGGCCTTAAAT
* *
710819 CAGCATATTGGCGC-CTTTGTCAT
126 CAGCATATTGGCACTC-TTCTCAT
* * * * *
710842 CTTTAAGTCCAATGTCGCTGGCCTAGAATCAACATATTAGCACCTTCACCTTTAAGTCCAAAATC
1 CTTTAAGTCTAATGTCGCTGGCCT-GAATCAGCACATT-GCACCTTCATCTTTAAGTCCAATATC
* *
710907 ACTGGCCTTGAATCAGCATATTGGCATCTGTAACAT-TCCTAAAACCAATGTCGCTGGCCTTAAA
64 GCTGGCC-TGAATCAGCATATTGGCATCTGT--CATCT-CTAAAACCAATATCGCTGGCCTTAAA
*
710971 TCAGCATATTGGCATTCTTCTCAT
125 TCAGCATATTGGCACTCTTCTCAT
* * * *
710995 CTTCAAGTCTAATGTCGCTGACCGTGAATCAGCACATTGACATTCTTTACATCTTTAAGCCCAAT
1 CTTTAAGTCTAATGTCGCTGGCC-TGAATCAGCACATTG-CA--CCTT-CATCTTTAAGTCCAAT
711060 ATCGCTGGTCCTGAATCAGCATATTGGCA
61 ATCGCTGG-CCTGAATCAGCATATTGGCA
711089 CCTTTATCAC
Statistics
Matches: 202, Mismatches: 34, Indels: 19
0.79 0.13 0.07
Matches are distributed among these distances:
151 6 0.03
152 3 0.01
153 148 0.73
154 2 0.01
155 3 0.01
156 38 0.19
157 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (148 bp):
CTTTAAGTCTAATGTCGCTGGCCTGAATCAGCACATTGCACCTTCATCTTTAAGTCCAATATCGC
TGGCCTGAATCAGCATATTGGCATCTGTCATCTCTAAAACCAATATCGCTGGCCTTAAATCAGCA
TATTGGCACTCTTCTCAT
Found at i:715103 original size:12 final size:12
Alignment explanation
Indices: 715088--715115 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
715078 ATCTCTCTTC
715088 TTTTCTCTTTTT
1 TTTTCTCTTTTT
715100 TTTTCTCTTTTT
1 TTTTCTCTTTTT
715112 TTTT
1 TTTT
715116 TTTTTTGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (12 bp):
TTTTCTCTTTTT
Found at i:722179 original size:12 final size:12
Alignment explanation
Indices: 722162--722210 Score: 73
Period size: 12 Copynumber: 4.2 Consensus size: 12
722152 AAATAGGGAG
*
722162 AAAAAGAGAGAA
1 AAAAAGAAAGAA
722174 AAAAAGAAAGAA
1 AAAAAGAAAGAA
*
722186 AAAAAGAAA-AG
1 AAAAAGAAAGAA
722197 AAAAAGAAAGAA
1 AAAAAGAAAGAA
722209 AA
1 AA
722211 TAAGGAAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
11 10 0.30
12 23 0.70
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAGAA
Found at i:722188 original size:23 final size:23
Alignment explanation
Indices: 722160--722219 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
722150 GCAAATAGGG
* *
722160 AGAAAAAGAGAGAA-AAAAAGAA
1 AGAAAAAAAGAAAAGAAAAAGAA
722182 AGAAAAAAAGAAAAGAAAAAGAA
1 AGAAAAAAAGAAAAGAAAAAGAA
*
722205 AGAAAATAAGGAAAA
1 AGAAAA-AAAGAAAA
722220 ACAATCTAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
22 12 0.36
23 14 0.42
24 7 0.21
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (23 bp):
AGAAAAAAAGAAAAGAAAAAGAA
Found at i:722948 original size:13 final size:13
Alignment explanation
Indices: 722930--722955 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
722920 TACAGCAAGT
722930 ATGTATCGATACA
1 ATGTATCGATACA
722943 ATGTATCGATACA
1 ATGTATCGATACA
722956 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:725208 original size:21 final size:21
Alignment explanation
Indices: 725175--725219 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
725165 TTGCAAGTTG
*
725175 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
725197 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
725217 AAA
1 AAA
725220 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:727043 original size:15 final size:15
Alignment explanation
Indices: 727023--727053 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
727013 TAAAAATGTC
*
727023 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
727038 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
727053 C
1 C
727054 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:730993 original size:20 final size:20
Alignment explanation
Indices: 730968--731006 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
730958 TTATATGAAT
730968 TACTTGATTAAGGGGGAGAA
1 TACTTGATTAAGGGGGAGAA
730988 TACTTGATTAAGGGGGAGA
1 TACTTGATTAAGGGGGAGA
731007 TTTATTAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.05, G:0.36, T:0.26
Consensus pattern (20 bp):
TACTTGATTAAGGGGGAGAA
Found at i:731745 original size:13 final size:13
Alignment explanation
Indices: 731727--731752 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
731717 TACAGCAAGT
731727 ATGTATCGATACA
1 ATGTATCGATACA
731740 ATGTATCGATACA
1 ATGTATCGATACA
731753 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:735238 original size:59 final size:60
Alignment explanation
Indices: 735131--735254 Score: 205
Period size: 59 Copynumber: 2.1 Consensus size: 60
735121 AGGGATGCAA
* *
735131 TACGAGGACTTCCCAGGAGGTTACCCATCTTAGTACTATTCTCACCCAAGCACGCTTAAC
1 TACGAGGACTTCCCAGGAGGTTACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAAC
* *
735191 TACG-GGACTTCTCAGGAGGTTACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAAC
1 TACGAGGACTTCCCAGGAGGTTACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAAC
735250 TACGA
1 TACGA
735255 AGCTCTGATG
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
59 55 0.93
60 4 0.07
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (60 bp):
TACGAGGACTTCCCAGGAGGTTACCCATCCTAGTACTACTCTCACCCAAGCACGCTTAAC
Found at i:735730 original size:20 final size:20
Alignment explanation
Indices: 735688--735741 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
735678 TTTAATCCAG
* * *
735688 ATGTATCCATACATTTTTCA
1 ATGTATCGATACATGTATCA
*
735708 ATGTATCGATACATGTATGA
1 ATGTATCGATACATGTATCA
*
735728 ATGTATTGATACAT
1 ATGTATCGATACAT
735742 TCTGTTTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATGTATCA
Found at i:738196 original size:355 final size:355
Alignment explanation
Indices: 737545--738254 Score: 1285
Period size: 355 Copynumber: 2.0 Consensus size: 355
737535 ATGAGGTATC
* *
737545 GTTTAAAAGGTAACTCAATGAGGGTCGATATAAAAATATTTCAAAAATCCAAAAAAATCGTTTTT
1 GTTTAAAAGATAACTCAATGAGGGTCGATATAAAAATATTTCAAAAATCCAAAAAAATCATTTTT
* *
737610 TGGGTGGAATAAATTCTCAAAGTTGGGTGAATTGCATTGCTGGCAGAGCACATGTAGAGGAAGGT
66 TGGGTGGAATAAATTCTCAAAGTTGGGTGAATTGCATTGCAGGCAGAGCACATGCAGAGGAAGGT
* * *
737675 GTGTCAAACTTTGAAAAATTACCCCGGAGTCATTTGGTATCGAAAAATTACAAATAATACCTTTT
131 GTGTCAAACTTTGAAAAATTACCCCGAACTCATTTGGCATCGAAAAATTACAAATAATACCTTTT
*
737740 CAAAAAGGGAATTTCGTGGCCTTTTTAGGAAAAATGTTGAGAAAATTTGGAAAAACCGCCTGCTG
196 CAAAAAGGGAATTTCATGGCCTTTTTAGGAAAAATGTTGAGAAAATTTGGAAAAACCGCCTGCTG
*
737805 GGCCTGAGCAACCCAAATAGAATGCATTTTGCTGATTCCAAGGCTTCTAGACAGCTTGGGTTCAA
261 GGCCTGAGCAACCCAAATAGAATGCATTTTGCTGATTCCAAGGCTTCTAGACAGCTTAGGTTCAA
737870 AAAATCATAACTCCCTTATCCGGACTGGTT
326 AAAATCATAACTCCCTTATCCGGACTGGTT
*
737900 GTTTAAAAGATAACTCGATGAGGGTCGATATAAAAATATTTCAAAAATCCAAAAAAATCATTTTT
1 GTTTAAAAGATAACTCAATGAGGGTCGATATAAAAATATTTCAAAAATCCAAAAAAATCATTTTT
737965 TGGGTGGAATAAATTCTCAAAGTTGGGTGAATTGCATTGCAGGCAGAGCACATGCAGAGGAAGGT
66 TGGGTGGAATAAATTCTCAAAGTTGGGTGAATTGCATTGCAGGCAGAGCACATGCAGAGGAAGGT
* *
738030 GTGTCAAACTTTGAAAAATTACCCCGAACTCGTTTGGCATCGAAAAATTGCAAATAATACCTTTT
131 GTGTCAAACTTTGAAAAATTACCCCGAACTCATTTGGCATCGAAAAATTACAAATAATACCTTTT
* *
738095 CGAAAAGGGAATTTCATGGCCTTTTTAGGAAAAATGTTGAGAAAATTTGGAAAAACCGTCTGCTG
196 CAAAAAGGGAATTTCATGGCCTTTTTAGGAAAAATGTTGAGAAAATTTGGAAAAACCGCCTGCTG
*
738160 GGCCTGAGCAACCCAAATAGAATGCATTTTGCTGATTCGAAGGCTTCTAGACAGCTTAGGTTCAA
261 GGCCTGAGCAACCCAAATAGAATGCATTTTGCTGATTCCAAGGCTTCTAGACAGCTTAGGTTCAA
738225 AAAATCATAACTCCCTTATCCGGACTGGTT
326 AAAATCATAACTCCCTTATCCGGACTGGTT
738255 CGGGGGTAAA
Statistics
Matches: 340, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
355 340 1.00
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (355 bp):
GTTTAAAAGATAACTCAATGAGGGTCGATATAAAAATATTTCAAAAATCCAAAAAAATCATTTTT
TGGGTGGAATAAATTCTCAAAGTTGGGTGAATTGCATTGCAGGCAGAGCACATGCAGAGGAAGGT
GTGTCAAACTTTGAAAAATTACCCCGAACTCATTTGGCATCGAAAAATTACAAATAATACCTTTT
CAAAAAGGGAATTTCATGGCCTTTTTAGGAAAAATGTTGAGAAAATTTGGAAAAACCGCCTGCTG
GGCCTGAGCAACCCAAATAGAATGCATTTTGCTGATTCCAAGGCTTCTAGACAGCTTAGGTTCAA
AAAATCATAACTCCCTTATCCGGACTGGTT
Found at i:740663 original size:52 final size:49
Alignment explanation
Indices: 740615--740793 Score: 172
Period size: 43 Copynumber: 3.7 Consensus size: 49
740605 ATGCCAATGG
**
740615 GCTGATTCAAGGCCAGCGACATTGGGTTTAAAGACGACAAAGGCGCCAATAT
1 GCTGATTCAAGGCCAGCGACATTGGACTTAAAGACG---AAGGCGCCAATAT
* * * * *
740667 ACTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATCT
1 GCTGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGCGCCAATAT
* * *
740716 GCTAATTCAAGGCCAGCAACATTGGACTT----A--AAGGTGCCAATAT
1 GCTGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGCGCCAATAT
* *
740759 GCTGATTCAAGGCCAGTGATATTGGACTTAGAAGA
1 GCTGATTCAAGGCCAGCGACATTGGACTTA-AAGA
740794 AGATGCCACC
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 37 0.35
45 1 0.01
48 1 0.01
49 36 0.34
52 31 0.29
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (49 bp):
GCTGATTCAAGGCCAGCGACATTGGACTTAAAGACGAAGGCGCCAATAT
Found at i:740731 original size:49 final size:48
Alignment explanation
Indices: 740498--740801 Score: 190
Period size: 52 Copynumber: 6.2 Consensus size: 48
740488 AAGAGTGATA
* * *
740498 AAGGTGCCAATATGCTGATTC-AGGACCAGTGATATTGGGCTTAAAGATG
1 AAGGTGCCAATATGCTGATTCAAGG-CCAGCGACATTGGACTTAAAGA-G
* * * * ** * * *
740547 TAAAGAATGTCAATGTGCTGATTCACGATCAGCGACTTTAGACTTGATGATGAG
1 --AAG-GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT-A--AAGAG
* ** **
740601 AAGAATGCCAATGGGCTGATTCAAGGCCAGCGACATTGGGTTTAAAGACG
1 AAG-GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-G
* * *
740651 ACAAAGGCGCCAATATACTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
1 ---AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-G
* * *
740703 AAGGTGCCAATCTGCTAATTCAAGGCCAGCAACATTGGACTT----A-
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAG
* * *
740746 AAGGTGCCAATATGCTGATTCAAGGCCAGTGATATTGGACTTAGA-AG
1 AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAG
*
740793 AAGATGCCA
1 AAGGTGCCA
740802 CCAACTTGTG
Statistics
Matches: 197, Mismatches: 43, Indels: 30
0.73 0.16 0.11
Matches are distributed among these distances:
43 37 0.19
45 1 0.01
46 1 0.01
47 8 0.04
49 39 0.20
50 1 0.01
51 4 0.02
52 97 0.49
53 5 0.03
54 1 0.01
55 3 0.02
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (48 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAG
Found at i:740837 original size:29 final size:28
Alignment explanation
Indices: 740810--741166 Score: 375
Period size: 29 Copynumber: 12.6 Consensus size: 28
740800 CACCAACTTG
740810 TGTGGGC-TTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
** * *
740837 TGTGGGC-TTTGAAAATGTGCTACTAACT
1 TGTGGGCTTTTGAAGGT-TGCCACTGACT
*
740865 TGTGGGC-TTTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTTTG--AAGGTTGCCACTGACT
** *
740893 TGTGGGCTTTTGAAAATATGCCACTAACT
1 TGTGGGCTTTTGAAGGT-TGCCACTGACT
740922 TGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* *
740950 TGTGGGC-TTTGAAAGGGGTGCCACCGACT
1 TGTGGGCTTTTG-AA-GGTTGCCACTGACT
* *
740979 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTG-AAGGTTGCCACTGACT
* *
741008 TTTGGGCTTTTGAAGGGTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* * *
741036 TGTGGGCTTTTAAAAAGATGCCACTGACT
1 TGTGGGCTTTT-GAAGGTTGCCACTGACT
*
741065 TGTGGGCTTTGGAAGG-TGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* *
741092 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTG-AAGGTTGCCACTGACT
* *
741121 TGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTG-AAGGTTGCCACTGACT
*
741150 TGTGGGCTTTGGAAGGT
1 TGTGGGCTTTTGAAGGT
741167 GAGATTTCCA
Statistics
Matches: 286, Mismatches: 32, Indels: 23
0.84 0.09 0.07
Matches are distributed among these distances:
27 42 0.15
28 89 0.31
29 146 0.51
30 9 0.03
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (28 bp):
TGTGGGCTTTTGAAGGTTGCCACTGACT
Found at i:740905 original size:57 final size:57
Alignment explanation
Indices: 740810--741159 Score: 451
Period size: 57 Copynumber: 6.2 Consensus size: 57
740800 CACCAACTTG
* * * * *
740810 TGTGGGC-TTTG-AAGGTTGCCACTGACTTGTGGGCTTTGAAAATGTGCTACTAACT
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
* * ** *
740865 TGTGGGC-TTTGAAAAGGTGCCACTAACTTGTGGGCTTTTGAAAATATGCCACTAACT
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGC-TTTGAAAAGGTGCCACTGACT
* * * *
740922 TGTGGGCTTTTG-AAGGTTGCCACTGACTTGTGGGCTTTGAAAGGGGTGCCACCGACT
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAA-AGGTGCCACTGACT
* *
740979 TGTGGGCTTTTGAAAAGATGCCACTGACTTTTGGGCTTTTG-AAGGGTGCCACTGACT
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGC-TTTGAAAAGGTGCCACTGACT
* *
741036 TGTGGGCTTTTAAAAAGATGCCACTGACTTGTGGGCTTTG-GAAGGTGCCACTGACT
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
*
741092 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGC-TTTGAAAAGGTGCCACTGACT
741150 TGTGGGCTTT
1 TGTGGGCTTT
741160 GGAAGGTGAG
Statistics
Matches: 263, Mismatches: 24, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
55 11 0.04
56 80 0.30
57 118 0.45
58 50 0.19
59 4 0.02
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (57 bp):
TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACT
Found at i:740993 original size:86 final size:85
Alignment explanation
Indices: 740810--741159 Score: 440
Period size: 86 Copynumber: 4.1 Consensus size: 85
740800 CACCAACTTG
* * * * *
740810 TGTGGGC-TTTG-AAGGTTGCCACTGACTTGTGGGC-TTTGAAAATGTGCTACTAACTTGTGGGC
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAAGT-TGCCACTGACTTGTGGGC
* *
740872 TTTGAAAAGGTGCCACTAACT
65 TTTGAAAAGATGCCACTGACT
* * *
740893 TGTGGGCTTTTGAAAATATGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAAGTTGCCACTGACTTGTGGGCT
* * *
740958 TTGAAAGGGGTGCCACCGACT
66 TTGAAA-AGATGCCACTGACT
* * *
740979 TGTGGGCTTTTGAAAAGATGCCACTGACTTTTGGGCTTTTGAAGGGTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAAGTTGCCACTGACTTGTGGGC-
*
741044 TTTAAAAAGATGCCACTGACT
65 TTTGAAAAGATGCCACTGACT
* * *
741065 TGTGGGC-TTTG-GAAGGTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGC
1 TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTTG-AAAGTTGCCACTGACTTGTGGGC
741128 TTTTGAAAAGATGCCACTGACT
65 -TTTGAAAAGATGCCACTGACT
741150 TGTGGGCTTT
1 TGTGGGCTTT
741160 GGAAGGTGAG
Statistics
Matches: 235, Mismatches: 25, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
83 7 0.03
84 29 0.12
85 95 0.40
86 98 0.42
87 6 0.03
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (85 bp):
TGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAAGTTGCCACTGACTTGTGGGCT
TTGAAAAGATGCCACTGACT
Found at i:741160 original size:85 final size:82
Alignment explanation
Indices: 740810--741167 Score: 423
Period size: 85 Copynumber: 4.2 Consensus size: 82
740800 CACCAACTTG
* *
740810 TGTGGGCTTT-GAAGGTTGCCACTGACTTGTGGGC-TTTGAAAATGTGCTACTAACTTGTGGGCT
1 TGTGGGCTTTGGAAGG-TGCCACTGACTTGTGGGCTTTTG-AAA-GTGCCACTGACTTGTGGGCT
* *
740873 TTGAAAAGGTGCCACTAACT
63 TTGAAAAGATGCCACTGACT
* ** * *
740893 TGTGGGCTTTTGAAAATATGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCT
1 TGTGGGC-TTTG-GAAGGTGCCACTGACTTGTGGGCTTTTGAAAG-TGCCACTGACTTGTGGGCT
* * *
740958 TTGAAAGGGGTGCCACCGACT
63 TTGAAA-AGATGCCACTGACT
* * * *
740979 TGTGGGCTTTTGAAAAGATGCCACTGACTTTTGGGCTTTTGAAGGGTGCCACTGACTTGTGGGCT
1 TGTGGGC-TTTG-GAAGGTGCCACTGACTTGTGGGCTTTTGAA-AGTGCCACTGACTTGTGGGC-
*
741044 TTTAAAAAGATGCCACTGACT
62 TTTGAAAAGATGCCACTGACT
741065 TGTGGGCTTTGGAAGGTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGGAAGGTGCCACTGACTTGTGGGCTTTTG-AAAG-TGCCACTGACTTGTGGGC-T
741130 TTGAAAAGATGCCACTGACT
63 TTGAAAAGATGCCACTGACT
741150 TGTGGGCTTTGGAAGGTG
1 TGTGGGCTTTGGAAGGTG
741168 AGATTTCCAA
Statistics
Matches: 243, Mismatches: 22, Indels: 18
0.86 0.08 0.06
Matches are distributed among these distances:
83 7 0.03
84 30 0.12
85 105 0.43
86 93 0.38
87 8 0.03
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (82 bp):
TGTGGGCTTTGGAAGGTGCCACTGACTTGTGGGCTTTTGAAAGTGCCACTGACTTGTGGGCTTTG
AAAAGATGCCACTGACT
Done.