Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold511
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1668812
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 6 of 12
Found at i:746962 original size:9 final size:9
Alignment explanation
Indices: 746948--746993 Score: 58
Period size: 9 Copynumber: 4.9 Consensus size: 9
746938 TTCTCTTCAA
746948 AAAAAAAAC
1 AAAAAAAAC
746957 AAAAAAAAC
1 AAAAAAAAC
746966 AAAACAAAA-
1 AAAA-AAAAC
746975 AAAACAAAAC
1 AAAA-AAAAC
746985 AAAGAAAAA
1 AAA-AAAAA
746994 GAGAGAAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 22 0.65
10 11 0.32
11 1 0.03
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:746969 original size:14 final size:14
Alignment explanation
Indices: 746946--746993 Score: 80
Period size: 14 Copynumber: 3.4 Consensus size: 14
746936 CCTTCTCTTC
746946 AAAAAA-AAAACAA
1 AAAAAACAAAACAA
746959 AAAAAACAAAACAA
1 AAAAAACAAAACAA
746973 AAAAAACAAAACAA
1 AAAAAACAAAACAA
746987 AGAAAAA
1 A-AAAAA
746994 GAGAGAAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.18
14 22 0.67
15 5 0.15
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (14 bp):
AAAAAACAAAACAA
Found at i:746978 original size:23 final size:23
Alignment explanation
Indices: 746948--746992 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
746938 TTCTCTTCAA
746948 AAAAAAAACAAAAAAAACAAAAC
1 AAAAAAAACAAAAAAAACAAAAC
* *
746971 AAAAAAAACAAAACAAAGAAAA
1 AAAAAAAACAAAAAAAACAAAA
746993 AGAGAGAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (23 bp):
AAAAAAAACAAAAAAAACAAAAC
Found at i:748058 original size:27 final size:27
Alignment explanation
Indices: 748028--748168 Score: 65
Period size: 27 Copynumber: 5.1 Consensus size: 27
748018 TTGGTGGCAT
748028 TTTCCAGTCCTCAAAGAGCAGGACACC
1 TTTCCAGTCCTCAAAGAGCAGGACACC
* * * * ** *
748055 TTTCAAAGCCCACACAAGTTGGTGG-CA-T
1 TTTC-CAGTCCTCA-AAG-AGCAGGACACC
*
748083 TTTTCAGTCCTCAAAGAGCAGGACACC
1 TTTCCAGTCCTCAAAGAGCAGGACACC
* * * * ** *
748110 TTTCAAAGCCCACACAAGTTGGTGG-CA-T
1 TTTC-CAGTCCTCA-AAG-AGCAGGACACC
748138 TTTCCAGTCCTCAAAGAGCAGGACACC
1 TTTCCAGTCCTCAAAGAGCAGGACACC
748165 TTTC
1 TTTC
748169 ACAGCCCACA
Statistics
Matches: 74, Mismatches: 30, Indels: 20
0.60 0.24 0.16
Matches are distributed among these distances:
25 6 0.08
26 10 0.14
27 23 0.31
28 19 0.26
29 10 0.14
30 6 0.08
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (27 bp):
TTTCCAGTCCTCAAAGAGCAGGACACC
Found at i:748062 original size:55 final size:55
Alignment explanation
Indices: 747978--748653 Score: 1151
Period size: 55 Copynumber: 12.3 Consensus size: 55
747968 TCCGCTTTTT
747978 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
748033 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
748088 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
748143 AGTCCTCAAAGAGCAGGACACCTTTCACAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
748198 AGTCCTCAAAAAGCAGGCCACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
748253 AGTCCTCAAAAAGTAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
748308 AGTCCTCAAAAAGCAGGCCACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
748363 AGTCCTCAAAAAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
748418 AGTCCTCAAAGAGCAGGACACCTCTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
748473 AGTCCTCAAAGAGCATGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
748528 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGCCACCTTT-C
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
* * *
748583 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTT-T
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
*
748638 AGTCCTCAAAAAGCAG
1 AGTCCTCAAAGAGCAG
748654 AATACACTTT
Statistics
Matches: 594, Mismatches: 24, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
54 2 0.00
55 587 0.99
56 5 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:749414 original size:21 final size:21
Alignment explanation
Indices: 749390--749446 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
749380 AATTTATCCA
749390 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
* *
749411 AATGTATCGATACAATTGTGG
1 AATGTATCGATACATTTGTAG
749432 AATGTATCGATACAT
1 AATGTATCGATACAT
749447 CCTACAAATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:749526 original size:19 final size:19
Alignment explanation
Indices: 749502--749569 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
749492 AATTCAACAA
749502 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
749521 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
749536 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
* *
749553 ATTATATCGATACATAA
1 TTTGTATCGATACATAA
749570 TTAGCTACTG
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 27 0.64
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:749541 original size:13 final size:13
Alignment explanation
Indices: 749523--749547 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
749513 ACATAAGTTT
749523 TGTATCGATACAA
1 TGTATCGATACAA
749536 TGTATCGATACA
1 TGTATCGATACA
749548 TAAGTATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:749545 original size:32 final size:32
Alignment explanation
Indices: 749504--749566 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
749494 TTCAACAATT
* *
749504 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTATATCGATACAA
749536 TGTATCGATACATAAGTATTATATCGATACA
1 TGTATCGATACATAAGTATTATATCGATACA
749567 TAATTAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTATATCGATACAA
Found at i:749627 original size:13 final size:13
Alignment explanation
Indices: 749609--749634 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
749599 CATTTTTCTG
749609 TGTATCGATACAT
1 TGTATCGATACAT
749622 TGTATCGATACAT
1 TGTATCGATACAT
749635 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:749627 original size:33 final size:33
Alignment explanation
Indices: 749589--749655 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
749579 GCCAAGGAAA
***
749589 TGTATCAATACATTTTTCTGTGTATCGATACAT
1 TGTATCAATACATGGATCTGTGTATCGATACAT
* *
749622 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCAATACATGGATCTGTGTATCGATACAT
749655 T
1 T
749656 TGGAAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (33 bp):
TGTATCAATACATGGATCTGTGTATCGATACAT
Found at i:752063 original size:51 final size:53
Alignment explanation
Indices: 751999--752129 Score: 187
Period size: 51 Copynumber: 2.5 Consensus size: 53
751989 AGTTTCTCAA
* *
751999 TTCTTCACAATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACTAAT
* *
752050 TT-TTCTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACTAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACTAAT
752104 TTCTTCACAATCGGGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
752130 CCCGTTAATC
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
50 3 0.04
51 33 0.48
53 10 0.14
54 20 0.29
55 3 0.04
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACTAAT
Found at i:752256 original size:52 final size:54
Alignment explanation
Indices: 752200--752337 Score: 142
Period size: 52 Copynumber: 2.6 Consensus size: 54
752190 TTTTATCGCT
* * ** *
752200 AAAACACTAATTTTTCCACAATCGGGGATACTCCCATC-CCGGTTTTATTTTC-
1 AAAACACCAATTTTTCCACAATCGGGGATACTCCCAACTCCAATTTTATTTCCA
* **
752252 AAAACGCCAA-TTTTCCTTTAATCGGGGATACT-CCAACTCCAATTTTATTTCCA
1 AAAACACCAATTTTTCC-ACAATCGGGGATACTCCCAACTCCAATTTTATTTCCA
* *
752305 AAAATACCAATTTTT-CACAATCGAGGATACTCC
1 AAAACACCAATTTTTCCACAATCGGGGATACTCC
752338 AACCTCGTTA
Statistics
Matches: 68, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
51 10 0.15
52 44 0.65
53 10 0.15
54 4 0.06
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (54 bp):
AAAACACCAATTTTTCCACAATCGGGGATACTCCCAACTCCAATTTTATTTCCA
Found at i:752390 original size:212 final size:212
Alignment explanation
Indices: 752004--752392 Score: 579
Period size: 212 Copynumber: 1.8 Consensus size: 212
751994 CTCAATTCTT
* *
752004 CACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGATA
1 CACAATCGGGGATATCCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
* * *
752069 CTCTAACTCCGATTTTATTTCCAAAAAACACTAATTTCTTCACAATCGGGGATACTCCAACCCCG
66 CTCCAACTCCAATTTTATTTCCAAAAAACACTAATTTCTTCACAATCGAGGATACTCCAACCCCG
* * *
752134 TTAATCATCGGGGATACTCCAACCACGTTATTTCCGAGGGGATACTCTAACCCCGGTTTTATCGC
131 TTAATCATCGGGGATACTCCAACCACATTACTTCCGAAGGGATACTCTAACCCCGGTTTTATCGC
752199 TAAAACACTAATTTTTC
196 TAAAACACTAATTTTTC
* * * *
752216 CACAATCGGGGATACTCCCATC-CCGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGA
1 CACAATCGGGGATA-TCCCAACTCCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGGA
752280 TACTCCAACTCCAATTTTATTTCCAAAAATAC-C-AATTT-TTCACAATCGAGGATACTCCAACC
64 TACTCCAACTCCAATTTTATTTCCAAAAA-ACACTAATTTCTTCACAATCGAGGATACTCCAACC
* * *
752342 TCGTTATTTCATCGGGGATACTCCAACCCCATTACTTCCGAAGGGATACTC
128 CCGTTA-ATCATCGGGGATACTCCAACCACATTACTTCCGAAGGGATACTC
752393 CAATCCCGAT
Statistics
Matches: 158, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
211 28 0.18
212 83 0.53
213 45 0.28
214 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (212 bp):
CACAATCGGGGATATCCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATA
CTCCAACTCCAATTTTATTTCCAAAAAACACTAATTTCTTCACAATCGAGGATACTCCAACCCCG
TTAATCATCGGGGATACTCCAACCACATTACTTCCGAAGGGATACTCTAACCCCGGTTTTATCGC
TAAAACACTAATTTTTC
Found at i:759567 original size:20 final size:20
Alignment explanation
Indices: 759521--759573 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
759511 ACGAATGACT
* **
759521 TGTATCGATATATTTTTTCA
1 TGTATCGATACATTTAGTCA
* *
759541 AGAATCGATACATTTAGTCA
1 TGTATCGATACATTTAGTCA
759561 TGTATCGATACAT
1 TGTATCGATACAT
759574 GTATCGATAC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATTTAGTCA
Found at i:759576 original size:12 final size:12
Alignment explanation
Indices: 759559--759583 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
759549 TACATTTAGT
759559 CATGTATCGATA
1 CATGTATCGATA
759571 CATGTATCGATA
1 CATGTATCGATA
759583 C
1 C
759584 TGTGCAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (12 bp):
CATGTATCGATA
Found at i:766936 original size:21 final size:21
Alignment explanation
Indices: 766910--766965 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
766900 GTTGGGACCT
766910 TGTATCGATACATTCTAGAAA
1 TGTATCGATACATTCTAGAAA
766931 TGTATCGATACATTCTAGAAA
1 TGTATCGATACATTCTAGAAA
766952 TGTATCGATACATT
1 TGTATCGATACATT
766966 TGGACAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTCTAGAAA
Found at i:770388 original size:16 final size:14
Alignment explanation
Indices: 770354--770406 Score: 63
Period size: 14 Copynumber: 3.7 Consensus size: 14
770344 TATAGTCCGT
*
770354 TTAATTT-AATAAA
1 TTAATTTAAATAAG
*
770367 TTAATTTATATTAAG
1 TTAATTTA-AATAAG
770382 TTTAATTTAAATAAG
1 -TTAATTTAAATAAG
770397 TTAATTTAAA
1 TTAATTTAAA
770407 ATTTAGATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
13 7 0.21
14 10 0.29
15 9 0.26
16 8 0.24
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (14 bp):
TTAATTTAAATAAG
Found at i:770408 original size:15 final size:15
Alignment explanation
Indices: 770361--770408 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
770351 CGTTTAATTT
* *
770361 AATAAATTAATTTAT
1 AATAAGTTAATTTAA
*
770376 ATTAAGTTTAATTT-A
1 AATAAG-TTAATTTAA
770391 AATAAGTTAATTTAA
1 AATAAGTTAATTTAA
770406 AAT
1 AAT
770409 TTAGATTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 7 0.26
15 13 0.48
16 7 0.26
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (15 bp):
AATAAGTTAATTTAA
Found at i:770634 original size:19 final size:21
Alignment explanation
Indices: 770587--770637 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 21
770577 TTCAATAATT
*
770587 TGTATCGATACAAACAGTAAA
1 TGTATTGATACAAACAGTAAA
*
770608 TGTA-TGATACATA-AGT-AA
1 TGTATTGATACAAACAGTAAA
770626 TGTATTGATACA
1 TGTATTGATACA
770638 GTGTATCGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 6 0.22
19 10 0.37
20 7 0.26
21 4 0.15
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (21 bp):
TGTATTGATACAAACAGTAAA
Found at i:770713 original size:13 final size:13
Alignment explanation
Indices: 770695--770721 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
770685 TAGAATGTAT
770695 AATGTATCGATAC
1 AATGTATCGATAC
770708 AATGTATCGATAC
1 AATGTATCGATAC
770721 A
1 A
770722 TCTAGGAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:773136 original size:51 final size:51
Alignment explanation
Indices: 773073--773232 Score: 180
Period size: 51 Copynumber: 3.1 Consensus size: 51
773063 TTTTCATCTT
* * *
773073 GGGGATACTCTAATCCCAGTTTCATTTCCAAAACGTCAATTTTTCTTAATC
1 GGGGATACTCTAATCCCAGTTTTATTTCTAAAACATCAATTTTTCTTAATC
* * * * *
773124 GGGGATACTCTAACTCCGA-TTTTATTTCTAAAACACCCATTTTCCATAATC
1 GGGGATACTCTAA-TCCCAGTTTTATTTCTAAAACATCAATTTTTCTTAATC
* * * *
773175 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTT-TATAGTC
1 GGGGATACTCTAATCCCAGTTTTATTTCTAAAACATCAATTTTTCT-TAATC
773226 GGGGATA
1 GGGGATA
773233 TTTCAACCCC
Statistics
Matches: 89, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
50 2 0.02
51 83 0.93
52 4 0.04
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (51 bp):
GGGGATACTCTAATCCCAGTTTTATTTCTAAAACATCAATTTTTCTTAATC
Found at i:773264 original size:79 final size:79
Alignment explanation
Indices: 773175--773557 Score: 380
Period size: 79 Copynumber: 4.9 Consensus size: 79
773165 TTCCATAATC
* * * * * * *
773175 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTTATAGTCGGGGATATTTCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTCTCACAATCAGGGATACTCCAAC
* *
773240 CCCATTATTTTTTA
66 CCCATTATTTCTGA
* * * **
773254 GGGGATACTCCAACCCCGGCTTTATTCCTAAAATATTGATTTCTCACAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTCTCACAATCAGGGATACTCCAAC
* *
773319 CCCGTTATTTCCGA
66 CCCATTATTTCTGA
* * **
773333 GGGGATACTCCAACCCCGGTTTTATTCCTAAAATATTGATTTCTCACAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTCTCACAATCAGGGATACTCCAAC
773398 CCCATTATTT-TGA
66 CCCATTATTTCTGA
* * * *
773411 GGGGATACTCCAACCCTGATTTTATTT-TCAAAACA-CAAATTT-TCTATAATTAGGGATACTCC
1 GGGGATACTCCAACCCCGGTTTTATTTCT-AAAACATC-AATTTCTC-ACAATCAGGGATACTCC
** *
773473 AACCCTGTTATTTCTAA
63 AACCCCATTATTTCTGA
* * * * * * * *
773490 GGGGATACTCCAACCCTGATTTTATTTCCAAAACACCGATTT-TCCATAATCAGGGGTACTCCAG
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTCT-CACAATCAGGGATACTCCAA
773554 CCCC
65 CCCC
773558 GTCGTCATCT
Statistics
Matches: 261, Mismatches: 36, Indels: 14
0.84 0.12 0.05
Matches are distributed among these distances:
77 3 0.01
78 61 0.23
79 195 0.75
80 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTCTCACAATCAGGGATACTCCAAC
CCCATTATTTCTGA
Found at i:773499 original size:157 final size:158
Alignment explanation
Indices: 773175--773557 Score: 407
Period size: 157 Copynumber: 2.4 Consensus size: 158
773165 TTCCATAATC
* * * * * * * *
773175 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTTATAGTCGGGGATATTTCAAC
1 GGGGATACTCCAACCCCGGTTTTATTCCTAAAACATCAATTTCTCACAATCAGGGATACTCCAAC
* * * ***
773240 CCCATTATTTTTTAGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATTGATTTCTCACAATC
66 CCCATTATTTTTGAGGGGATACTCCAACCCCGACTTTATTCCTAAAACACAAATTTCTCACAATC
*
773305 AGGGATACTCCAACCCCGTTATTTCCGA
131 AGGGATACTCCAACCCCGTTATTTCCAA
* **
773333 GGGGATACTCCAACCCCGGTTTTATTCCTAAAATATTGATTTCTCACAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTCCTAAAACATCAATTTCTCACAATCAGGGATACTCCAAC
* * * *
773398 CCCATTA-TTTTGAGGGGATACTCCAACCCTGATTTTATT-TTCAAAACACAAATTT-TCTATAA
66 CCCATTATTTTTGAGGGGATACTCCAACCCCGACTTTATTCCT-AAAACACAAATTTCTC-ACAA
* * *
773460 TTAGGGATACTCCAACCCTGTTATTTCTAA
129 TCAGGGATACTCCAACCCCGTTATTTCCAA
* * * * * *
773490 GGGGATACTCCAACCCTGATTTTATTTCC-AAAACACCGATTT-TCCATAATCAGGGGTACTCCA
1 GGGGATACTCCAACCCCGGTTTTA-TTCCTAAAACATCAATTTCT-CACAATCAGGGATACTCCA
*
773553 GCCCC
64 ACCCC
773558 GTCGTCATCT
Statistics
Matches: 188, Mismatches: 33, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
156 4 0.02
157 119 0.63
158 65 0.35
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (158 bp):
GGGGATACTCCAACCCCGGTTTTATTCCTAAAACATCAATTTCTCACAATCAGGGATACTCCAAC
CCCATTATTTTTGAGGGGATACTCCAACCCCGACTTTATTCCTAAAACACAAATTTCTCACAATC
AGGGATACTCCAACCCCGTTATTTCCAA
Found at i:779922 original size:55 final size:54
Alignment explanation
Indices: 779859--780274 Score: 537
Period size: 55 Copynumber: 7.5 Consensus size: 54
779849 TCCTTTCACC
779859 CTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
779912 CCTTTCAGTCCTCAAAGAGCAAGATGTCTTTCAAAGCCCACACAAGTTGGTGGCA
1 -CTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
779967 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 -CTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * *
780022 TTTTCTAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCATACAAGTCGGTGGCA
1 CTTTC-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
780077 TTTTCTAGCCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAGGTTGGTGGCA
1 CTTTC-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
780132 CCTTTCAGTCCTCAAAGAGTAGGACTCCTTTTAAAGCCCACGCAAGTTGGTGGCA
1 -CTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * *
780187 TTTTCCAGCCCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CTTT-CAGTCCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCA
*
780248 CTTCCTAGTCCTCAAAGAGCAGGACGC
1 CTTTC-AGTCCTCAAAGAGCAGGACGC
780275 TCTCTCATTT
Statistics
Matches: 318, Mismatches: 33, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
54 11 0.03
55 258 0.81
56 5 0.02
60 1 0.00
61 43 0.14
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (54 bp):
CTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:780034 original size:110 final size:108
Alignment explanation
Indices: 779866--780817 Score: 622
Period size: 110 Copynumber: 8.6 Consensus size: 108
779856 ACCCTTTAGT
779866 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAG
1 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAG
* * * *
779931 CAAGATGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
66 CAGGAT-CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCAGC
*
779976 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCTAGTCCTCAAAGA
1 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGA
* * * *
780040 GCAGGACACCTTTTAAAGCCCATACAAGTCGGTGGCATTTTCTAGC
65 GCAGGA-TCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC-AGC
*
780086 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAGGTTGGTGGCACCTTTCAGTCCTCAAAGAG
1 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAG
* * *
780151 TAGGACTCCTTTTAAAGCCCACGCAAGTTGGTGGCATTTTCCAGC
66 CAGGA-TCCTTTTAAAGCCCACACAAGTTGGTGGCACTTT-CAGC
* *
780196 CCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCT
1 CCTCAAAGAGCAGGACGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCT
* * * * ** *
780260 CAAAGAGCAGGA--C-------GCTCTCTC-A-TT--TCGC-CTTTTTGT
59 CAAAGAGCAGGATCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGC
* * * * * *
780296 CCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCA-CTTTCAGTCCTGAAAAAG
1 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAG
* * *
780360 TAGGATGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAGT
66 CAGGA-------TCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCAGC
* * * *
780411 CTTCAAAGAGCAAGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTC
1 CCTCAAAGAGCAGGACGC---C--TTT-CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
* * * *
780476 AAA-AGGCATGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTCAGT
60 AAAGA-GCA-G-GA----TCCTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTTCAGC
* * *
780533 CATCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGA
1 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGA
* * * * * ** *
780597 GTAGGATGC---T----CTCTC-C---TT--TCGC-CTTTTTGT
65 GCAGGATCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGC
* * * ** *
780627 CCTCAAAGAGTAGGATGCCTTTTAAAGCCCACACAAGCCGGTGGCA-CTTTCAGTCTTCAAAGAG
1 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAG
* * *
780691 CAGGGTGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGT
66 CAGGAT-C---C-TTTT--AAAGCCCACACAAGTTGGTGGCA-CTTTCAGC
* * * *
780742 CCTCAAAGGGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTCAGTCCTC
1 CCTCAAAGAGCAGGAC-GC----C-TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
*
780807 AAAGAGTAGGA
60 AAAGAGCAGGA
780818 CACACTTCCT
Statistics
Matches: 669, Mismatches: 96, Indels: 142
0.74 0.11 0.16
Matches are distributed among these distances:
93 31 0.05
94 77 0.12
96 3 0.00
97 1 0.00
98 2 0.00
99 1 0.00
100 19 0.03
101 5 0.01
102 7 0.01
104 2 0.00
105 1 0.00
106 5 0.01
107 4 0.01
108 1 0.00
109 12 0.02
110 209 0.31
111 10 0.01
112 1 0.00
113 7 0.01
114 2 0.00
115 48 0.07
116 76 0.11
117 4 0.01
118 1 0.00
119 1 0.00
120 4 0.01
121 54 0.08
122 78 0.12
123 2 0.00
124 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (108 bp):
CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAG
CAGGATCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGC
Found at i:780134 original size:165 final size:165
Alignment explanation
Indices: 779862--780602 Score: 651
Period size: 165 Copynumber: 4.4 Consensus size: 165
779852 TTTCACCCTT
* *
779862 TAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCA
1 TAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCTAGTCCTCA
* * *
779926 AAGAGCAAGATGTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
65 AAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
779991 CGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
130 CGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
* * * *
780027 TAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCATACAAGTCGGTGGCATTTTCTAGCCCTCAA
1 TAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAA
* *
780092 AGAGCAGGACGCCTTTCAAAGCCCACACAGGTTGGTGGCACCTTTCAGTCCTCAAAGAGTAGGAC
66 AGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC
* * *
780157 TCCTTTTAAAGCCCACGCAAGTTGGTGGCATTTTC
131 GCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
* * * * *
780192 CAGCCCTCAAAGAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGT
1 TAGTCCTCAAAGAGCAGGA------CACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGT
* * * ** *
780257 CCTCAAAGAGCAGGACG-C--T-------CTCTC-A-TT--T--CGCCTTTTTGTCCTTAAAGAG
60 CCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAG
* * * *
780306 CAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACTTTC
125 CAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
* * * * *
780347 -AGTCCTGAAAAAGTAGGATGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACTTT-TCAG
1 TAGTCCTCAAAGAGCAGGA------CACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCT-AG
* * * *
780410 TCTTCAAAGAGCAAGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCT
59 TCCTCAAAGAGCAGGACGC---C--TTT-CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCT
* * * *
780475 CAAA-AGGCATGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTC
118 CAAAGA-GCAGGAC-GC----C-TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
* ** * *
780530 -AGTCATCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAA
1 TAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAA
*
780594 AGAGTAGGA
66 AGAGCAGGA
780603 TGCTCTCTCC
Statistics
Matches: 467, Mismatches: 70, Indels: 66
0.77 0.12 0.11
Matches are distributed among these distances:
153 1 0.00
154 70 0.15
155 52 0.11
157 1 0.00
158 1 0.00
159 2 0.00
161 3 0.01
162 1 0.00
164 4 0.01
165 162 0.35
168 1 0.00
170 4 0.01
171 52 0.11
172 2 0.00
174 1 0.00
175 1 0.00
176 18 0.04
177 46 0.10
178 1 0.00
181 1 0.00
182 24 0.05
183 19 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (165 bp):
TAGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAA
AGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC
GCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
Found at i:780417 original size:154 final size:155
Alignment explanation
Indices: 780139--780422 Score: 421
Period size: 154 Copynumber: 1.8 Consensus size: 155
780129 GCACCTTTCA
* * * * *
780139 GTCCTCAAAGAGTAGGACTCCTTTTAAAGCCCACGCAAGTTGGTGGCATTTTCCAGCCCTCAAAG
1 GTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGCTGGTGGCACTTTCCAGCCCTCAAAA
780204 AGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCA
66 AGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCA
780269 GGACGCTCTCTCATTTCGCCTTTTT
131 GGACGCTCTCTCATTTCGCCTTTTT
* * *
780294 GTCCTTAAAGAGCAGGA-TGCCTTTTAAAGCCCACACAAGCTGGTGGCACTTT-CAGTCCTGAAA
1 GTCCTCAAAGAGCAGGACT-CCTTTTAAAGCCCACACAAGCTGGTGGCACTTTCCAGCCCTCAAA
* * * *
780357 AAGTAGGATGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACTT-TTCAGTCTTCAAAGAG
65 AAGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCT-AGTCCTCAAAGAG
780421 CA
129 CA
780423 AGATGCTTTC
Statistics
Matches: 115, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
153 1 0.01
154 69 0.60
155 45 0.39
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (155 bp):
GTCCTCAAAGAGCAGGACTCCTTTTAAAGCCCACACAAGCTGGTGGCACTTTCCAGCCCTCAAAA
AGTAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCA
GGACGCTCTCTCATTTCGCCTTTTT
Found at i:780419 original size:215 final size:209
Alignment explanation
Indices: 780090--780478 Score: 525
Period size: 215 Copynumber: 1.8 Consensus size: 209
780080 TCTAGCCCTC
* * *
780090 AAAGAGCAGGACGCCTTTCAAAGCCCACACAGGTTGGTGGCACCTTTCAGTCCTCAAAGAGTAGG
1 AAAGAGCAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAAAAGTAGG
* * *
780155 ACTCCTTTTAAAGCCCACGCAAGTTGGTGGCATTTTCCAGCCCTCAAAGAGTAGGACGCCTTCTC
66 ACTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGCCCTCAAAGAGCAAGACG-CTT-TC
780220 CTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCAT
129 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCC-AGTCCTCAAAGAGCAGGACGCTCTCTCAT
780283 TTCGCCTTTTTGTCCTT
193 TTCGCCTTTTTGTCCTT
* * *
780300 AAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCA-CTTTCAGTCCTGAAAAAGTAGG
1 AAAGAGCAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAAAAGTAGG
* * * *
780364 ATGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACTTTT-CAGTCTTCAAAGAGCAAGATG
66 A------CTCCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGCCCTCAAAGAGCAAGACG
*
780428 CTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAA
124 CTTTCCTTTT-CAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAA
780479 AGGCATGACA
Statistics
Matches: 155, Mismatches: 14, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
209 21 0.14
210 38 0.25
213 6 0.04
214 3 0.02
215 78 0.50
216 9 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (209 bp):
AAAGAGCAGGACGCCTTTCAAAGCCCACACAAGCTGGTGGCACCTTTCAGTCCTCAAAAAGTAGG
ACTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGCCCTCAAAGAGCAAGACGCTTTCCT
TTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCTCTCTCATTTC
GCCTTTTTGTCCTT
Found at i:780446 original size:61 final size:60
Alignment explanation
Indices: 780294--780606 Score: 296
Period size: 61 Copynumber: 5.3 Consensus size: 60
780284 TCGCCTTTTT
* *
780294 GTCCTTAAAGAGCAGGATGC---C-TTTT-AAAGCCCACACAAGCTGGTGGCA-CTTTCA
1 GTCCTCAAAGAGCAGGATGCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCA
* * * * * *
780348 GTCCTGAAAAAGTAGGATGCCTTCTCCTTTT-AAAGCCCACATAAGTTGGTGGCACTTTTCA
1 GTCCTCAAAGAGCAGGATG-CTT-TCTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCA
* * *
780409 GTCTTCAAAGAGCAAGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCA
1 GTCCTCAAAGAGCAGGATGCTTTCTTTTT-CAAAGCCCACACAAGTTGGTGGCACCTTTCA
* ** *
780470 GTCCTCAAA-AGGCATGACACCTTT-TCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTCA
1 GTCCTCAAAGA-GCAGGA-TGCTTTCT-TTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCA
* *
780531 GTCATCAAAGAGCAGGATGC---C--TTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCTA
1 GTCCTCAAAGAGCAGGATGCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-A
*
780586 GTCCTCAAAGAGTAGGATGCT
1 GTCCTCAAAGAGCAGGATGCT
780607 CTCTCCTTTC
Statistics
Matches: 214, Mismatches: 29, Indels: 30
0.78 0.11 0.11
Matches are distributed among these distances:
54 20 0.09
55 46 0.21
59 7 0.03
60 30 0.14
61 102 0.48
62 9 0.04
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (60 bp):
GTCCTCAAAGAGCAGGATGCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCA
Found at i:780530 original size:122 final size:115
Alignment explanation
Indices: 780300--780594 Score: 358
Period size: 122 Copynumber: 2.5 Consensus size: 115
780290 TTTTGTCCTT
* * * * * *
780300 AAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACTTTCAGTCCTGAAAAAGTAGGA
1 AAAGAGCAAGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAAAGCAGGA
** * * *
780365 TGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAGTCTTC
66 CACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCATC
780415 AAAGAGCAAGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAA
1 AAAGAGCAAGATGC---C--TTT-CAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAA
* * * *
780480 GGCATGACACCTT-TTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTCAGTCATC
59 AGCAGGACACCTTCTCCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCATC
*
780537 AAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAA
1 AAAGAGCAAGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCC-AGTCCTCAAA
780595 GAGTAGGATG
Statistics
Matches: 155, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
115 18 0.12
116 34 0.22
117 3 0.02
118 1 0.01
119 1 0.01
120 3 0.02
121 28 0.18
122 67 0.43
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (115 bp):
AAAGAGCAAGATGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAAAGCAGGA
CACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCATC
Found at i:780562 original size:331 final size:327
Alignment explanation
Indices: 779974--780809 Score: 990
Period size: 331 Copynumber: 2.6 Consensus size: 327
779964 GCACCTTTCA
* * * *
779974 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAG
1 GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACTTTC-AGTCCTCAAAG
* * * *
780039 AGCAGGA-----CACCTTTTAAAGCCCATACAAGTCGGTGGCA-TTTTCTAGCCCTCAAAGAGCA
65 AGCAGGATGCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCA
* * * *
780098 GGACGC---C--TTTCAAAGCCCACACAGGTTGGTGGCACCTTTCAGTCCTC-AAAGAGTAGGAC
129 GGAAGCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAGAGCAGCAC
* * * *
780157 TCCTTTTAAAGCCCACGCAAGTTGGTGGCATTTTCCAGCCCTCAAAGAGTAGGACGCCTTCTCCT
194 TCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGCCATCAAAGAGCAGGACGCCTTCTCC-
780222 TTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCATTTCG
258 --TAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCATTTCG
780287 CCTTTTT
321 CCTTTTT
* * *
780294 GTCCTTAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACTTTCAGTCCTGAAAAA
1 GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACTTTCAGTCCTCAAAGA
* * * *
780359 GTAGGATGCCTTCTCCTTTTAAAGCCCACATAAGTTGGTGGCACTTTTCAGTCTTCAAAGAGCAA
66 GCAGGATG-CTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAG
* *
780424 GATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAAG-GCATGAC
130 GAAGCTTTCTTTTT-CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAGAGCA-G-C
* * * *
780488 ACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTT-CAGTCATCAAAGAGCAGGATGCC
192 A-C--TCCTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTTCCAGCCATCAAAGAGCAGGACGCC
* * *
780552 TT-T-C-AAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGTAGGATGCTCTCTCCT
252 TTCTCCTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCAT
780614 TTCGCCTTTTT
317 TTCGCCTTTTT
* * *
780625 GTCCTCAAAGAGTAGGATGCCTTTTAAAGCCCACACAAGCCGGTGGCACTTTCAGTCTTCAAAGA
1 GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACTTTCAGTCCTCAAAGA
* * * * *
780690 GCAGGGTGCTT-TCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGGGCA
66 GCAGGATGCTTCTCCTTTT--AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCA
* * *
780754 GGACACCTTT-TCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTCAGTCCTCAAA
129 GGA-AGCTTTCT-TTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
780810 GAGTAGGACA
Statistics
Matches: 440, Mismatches: 51, Indels: 39
0.83 0.10 0.07
Matches are distributed among these distances:
319 15 0.03
320 48 0.11
325 44 0.10
326 5 0.01
328 1 0.00
329 6 0.01
330 6 0.01
331 247 0.56
332 13 0.03
333 1 0.00
334 1 0.00
335 1 0.00
336 7 0.02
337 42 0.10
338 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (327 bp):
GTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGCTGGTGGCACTTTCAGTCCTCAAAGA
GCAGGATGCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGG
AAGCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAGAGCAGCACTC
CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCAGCCATCAAAGAGCAGGACGCCTTCTCCTAA
AGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCATTTCGCCTTT
TT
Found at i:780774 original size:61 final size:60
Alignment explanation
Indices: 780645--780820 Score: 205
Period size: 61 Copynumber: 2.9 Consensus size: 60
780635 AGTAGGATGC
** * ***
780645 CTTTT-AAAGCCCACACAAGCCGGTGGCA-CTTTCAGTCTTCAAAGAGCAGG-GTGCTTT
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTT
* *
780702 CTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGGGCAGGACACCTTTT
1 C-TTTT-CAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACC-TTT
* * *
780765 CTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACAC
1 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACAC
780821 ACTTCCTTCC
Statistics
Matches: 100, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
57 1 0.01
58 4 0.04
60 21 0.21
61 65 0.65
62 5 0.05
63 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (60 bp):
CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTT
Found at i:781739 original size:19 final size:21
Alignment explanation
Indices: 781696--781747 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
781686 TTCAATAATT
781696 TGTATCGATACAAATAGTAAA
1 TGTATCGATACAAATAGTAAA
*
781717 TGTATCGATACATA-AGT-AA
1 TGTATCGATACAAATAGTAAA
781736 TGTATCGATACA
1 TGTATCGATACA
781748 GTGTATCGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 14 0.47
20 3 0.10
21 13 0.43
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (21 bp):
TGTATCGATACAAATAGTAAA
Found at i:784359 original size:51 final size:51
Alignment explanation
Indices: 784192--784362 Score: 191
Period size: 51 Copynumber: 3.4 Consensus size: 51
784182 TTTTCATCTT
* * * *
784192 GGGGATACTCCAATCTCGGTTTCATTTCCAAAACACCAATTTTTCT-TAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTT-TATAATC
* * * * * **
784243 AGGGATACTCTAACTCCGATTTTATTTCTAAAACACCCATTTTCCATAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTTATAATC
* * *
784294 GAGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTTATAGTC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTTATAATC
*
784345 GGGGATACTTCAACCCCG
1 GGGGATACTCCAACCCCG
784363 TTATTTCTGA
Statistics
Matches: 96, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
51 96 1.00
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.34
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTTTTTATAATC
Found at i:784427 original size:79 final size:79
Alignment explanation
Indices: 784296--784545 Score: 340
Period size: 79 Copynumber: 3.2 Consensus size: 79
784286 CCATAATCGA
* * * ** * * * *
784296 GGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTTATAGTCGGGGATACTTCAACCC
1 GGATACTCCAACCTCGGTTTTATTCCTAAAATATTGATTTCTCATAATCGGGGATACTCCAACCC
784361 CGTTATTTCTGAGG
66 CGTTATTTCTGAGG
*
784375 GGATACTCCAACCTCGGCTTTATTCCTAAAATATTGATTTCTCATAATCGGGGATACTCCAACCC
1 GGATACTCCAACCTCGGTTTTATTCCTAAAATATTGATTTCTCATAATCGGGGATACTCCAACCC
* *
784440 TGTTATTTCCGAGG
66 CGTTATTTCTGAGG
* * *
784454 GGATACTCCAACCTCAGTTTTATTCCTAAAATATTGACTTCTCACAATCGGGGATACTCCAACCC
1 GGATACTCCAACCTCGGTTTTATTCCTAAAATATTGATTTCTCATAATCGGGGATACTCCAACCC
*
784519 CGTTATTT-TCACGG
66 CGTTATTTCTGA-GG
784533 GGATACTCCAACC
1 GGATACTCCAACC
784546 CCGTTATTTT
Statistics
Matches: 151, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
78 1 0.01
79 150 0.99
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (79 bp):
GGATACTCCAACCTCGGTTTTATTCCTAAAATATTGATTTCTCATAATCGGGGATACTCCAACCC
CGTTATTTCTGAGG
Found at i:784542 original size:28 final size:29
Alignment explanation
Indices: 784502--784574 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 29
784492 TTCTCACAAT
784502 CGGGGATACTCCAACCCCGTTA-TTTTCA
1 CGGGGATACTCCAACCCCGTTATTTTTCA
*
784530 CGGGGATACTCCAACCCCGTTATTTTTGA
1 CGGGGATACTCCAACCCCGTTATTTTTCA
*
784559 -GAGGATACTCCAACCC
1 CGGGGATACTCCAACCC
784575 TGATTTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 37 0.88
29 5 0.12
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (29 bp):
CGGGGATACTCCAACCCCGTTATTTTTCA
Found at i:784615 original size:79 final size:79
Alignment explanation
Indices: 784532--784705 Score: 215
Period size: 79 Copynumber: 2.2 Consensus size: 79
784522 TATTTTCACG
*** *
784532 GGGATACTCCAACCCCGTTATTTTTGAGAGGATACTCCAACCCTGATTTTATTT-TCAAAACACC
1 GGGATACTCCAACCCCGTTATTTCCAAGAGGATACTCCAACCCCGATTTTATTTCT-AAAACACC
* *
784596 AATTTTCTATAATTA
65 AATTTTCCATAATCA
* * * * *
784611 GGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCTAGAAGACCG
1 GGGATACTCCAACCCCGTTATTTCCAAGAGGATACTCCAACCCCGATTTTATTTCTAAAACACCA
784676 ATTTTCCATAATCA
66 ATTTTCCATAATCA
* *
784690 GGGGTACTCCAGCCCC
1 GGGATACTCCAACCCC
784706 ATCGTCATCT
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
79 79 0.99
80 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTCCAAGAGGATACTCCAACCCCGATTTTATTTCTAAAACACCA
ATTTTCCATAATCA
Found at i:791102 original size:20 final size:20
Alignment explanation
Indices: 791077--791225 Score: 127
Period size: 20 Copynumber: 7.3 Consensus size: 20
791067 TTTTACTTAG
*
791077 ATGTATTGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
***
791097 ATGTATCGATACATTACCCA
1 ATGTATCGATACATTTTTCA
* * *
791117 GATGTATCGATATATCTTCCA
1 -ATGTATCGATACATTTTTCA
***
791138 ATGTATCGATACATTACCCA
1 ATGTATCGATACATTTTTCA
**
791158 GATGTATCGATACAACTTTCA
1 -ATGTATCGATACATTTTTCA
* * *
791179 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
791199 ATGTATCGATATATTCTTCA
1 ATGTATCGATACATTTTTCA
791219 ATGTATC
1 ATGTATC
791226 AAAAAATGTA
Statistics
Matches: 101, Mismatches: 26, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
20 70 0.69
21 31 0.31
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:791123 original size:41 final size:41
Alignment explanation
Indices: 791075--791225 Score: 191
Period size: 41 Copynumber: 3.7 Consensus size: 41
791065 ATTTTTACTT
* *
791075 AGATGTATTGATACATTTTTCAATGTATCGATACATTACCC
1 AGATGTATCGATACATCTTTCAATGTATCGATACATTACCC
* *
791116 AGATGTATCGATATATCTTCCAATGTATCGATACATTACCC
1 AGATGTATCGATACATCTTTCAATGTATCGATACATTACCC
* **
791157 AGATGTATCGATACAACTTTCAATGTATCGATACATGTA-TG
1 AGATGTATCGATACATCTTTCAATGTATCGATACAT-TACCC
*
791198 A-ATGTATCGATATAT-TCTTCAATGTATC
1 AGATGTATCGATACATCT-TTCAATGTATC
791226 AAAAAATGTA
Statistics
Matches: 97, Mismatches: 11, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.01
40 23 0.24
41 71 0.73
42 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (41 bp):
AGATGTATCGATACATCTTTCAATGTATCGATACATTACCC
Found at i:796900 original size:33 final size:32
Alignment explanation
Indices: 796863--796930 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
796853 CGTTACAAGC
**
796863 CAATGTATCGATACATTTTATGATGTATCGATA
1 CAATGTATCGATACATACTATG-TGTATCGATA
*
796896 CAATGTATCGATACATACTGTGTGTATCGATA
1 CAATGTATCGATACATACTATGTGTATCGATA
796928 CAA
1 CAA
796931 GTTTAGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATACTATGTGTATCGATA
Found at i:796903 original size:13 final size:13
Alignment explanation
Indices: 796885--796910 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
796875 ACATTTTATG
796885 ATGTATCGATACA
1 ATGTATCGATACA
796898 ATGTATCGATACA
1 ATGTATCGATACA
796911 TACTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:797009 original size:20 final size:21
Alignment explanation
Indices: 796964--797014 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
796954 CAATGACTTC
**
796964 TATCGATACATTCTTTTCAAG
1 TATCGATACATTCTGGTCAAG
*
796985 TATCGATACATT-TGGTCATG
1 TATCGATACATTCTGGTCAAG
797005 TATCGATACA
1 TATCGATACA
797015 ATGCAATCTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (21 bp):
TATCGATACATTCTGGTCAAG
Found at i:797026 original size:20 final size:20
Alignment explanation
Indices: 797003--797053 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
796993 CATTTGGTCA
*
797003 TGTATCGATACAATGCAATC
1 TGTATCGATACAATGAAATC
* * *
797023 TGTATCGATACATTTAAATG
1 TGTATCGATACAATGAAATC
797043 TGTATCGATAC
1 TGTATCGATAC
797054 TTTTCAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAATGAAATC
Found at i:801557 original size:18 final size:18
Alignment explanation
Indices: 801536--801570 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
801526 GAGAGAAGAA
*
801536 AAAACGAAAAAAAACAAC
1 AAAACAAAAAAAAACAAC
*
801554 AAAATAAAAAAAAACAA
1 AAAACAAAAAAAAACAA
801571 AAGGGGTCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.83, C:0.11, G:0.03, T:0.03
Consensus pattern (18 bp):
AAAACAAAAAAAAACAAC
Found at i:801564 original size:15 final size:15
Alignment explanation
Indices: 801543--801572 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
801533 GAAAAAACGA
801543 AAAAAAACAACAAAAT
1 AAAAAAA-AACAAAAT
801559 AAAAAAAAACAAAA
1 AAAAAAAAACAAAA
801573 GGGGTCCAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.87, C:0.10, G:0.00, T:0.03
Consensus pattern (15 bp):
AAAAAAAAACAAAAT
Found at i:802907 original size:29 final size:29
Alignment explanation
Indices: 802865--803202 Score: 406
Period size: 29 Copynumber: 11.9 Consensus size: 29
802855 AATACGACCT
*
802865 CTTTTCAAAGCCCACAAGTCAGTAGCACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC
*
802894 CTTTTCAAAGCCCATAAGTCAGTGGCACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
802923 CTTTTTAAAGCTCACAAGTCAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC
*
802952 C-TTTCAAAGCCCACAAGTTAGTGGCACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC
* *
802980 C--TCCAAAGCCCACAAGTCAGTGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC
803007 CTTTTCAAAGCCCACAAGTCAGTGGCACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC
* *
803036 CCTTTCAAAGCCCACAAGTCAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC
* *
803065 CTTTT-AAAG-CCACAAGTCAGTAGAACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
803092 C-TTCCAAAGCCCACAAGTTAGTAGCACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
803120 ATTTTCAAAGCCCATAAGTCAGTGGTACC
1 CTTTTCAAAGCCCACAAGTCAGTGGCACC
*
803149 C-TTTCAAAACCCACAAGGT-AGTGGCACC
1 CTTTTCAAAGCCCACAA-GTCAGTGGCACC
*
803177 ATTTT-AAAGCCCATACAAGTCAGTGG
1 CTTTTCAAAGCCC--ACAAGTCAGTGG
803203 TAACCCTCTC
Statistics
Matches: 263, Mismatches: 36, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
26 2 0.01
27 44 0.17
28 71 0.27
29 137 0.52
30 9 0.03
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (29 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCACC
Found at i:803010 original size:84 final size:84
Alignment explanation
Indices: 802867--803202 Score: 387
Period size: 84 Copynumber: 4.0 Consensus size: 84
802857 TACGACCTCT
* * * *
802867 TTTCAAAGCCCACAAGTCAGTAGCACCCTTTTCAAAGCCCATAAGTCAGTGGCACCCTTTTTAAA
1 TTTCAAAGCCCACAAGTCAGTGGCACCC-TTTCAAAGCCCACAAGTCAGTGGCAACCTTTTCAAA
*
802932 GCTCACAAGTCAGTGGCATCC
65 GCCCACAAGTCAGTGGCA-CC
* *
802953 TTTCAAAGCCCACAAGTTAGTGGCACCC-TCCAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAG
803017 CCCACAAGTCAGTGGCACCCC
66 CCCACAAGTCAGTGGCA--CC
* * * * *
803038 TTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAG-CCACAAGTCAGTAG-AACCCTTCCAAAG
1 TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAG
* *
803101 CCCACAAGTTAGTAGCACC
66 CCCACAAGTCAGTGGCACC
* * *
803120 ATTTTCAAAGCCCATAAGTCAGTGGTACCCTTTCAAAACCCACAAGGT-AGTGGC-ACCATTTT-
1 --TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAA-GTCAGTGGCAACC-TTTTC
803182 AAAGCCCATACAAGTCAGTGG
62 AAAGCCC--ACAAGTCAGTGG
803203 TAACCCTCTC
Statistics
Matches: 213, Mismatches: 27, Indels: 19
0.82 0.10 0.07
Matches are distributed among these distances:
82 2 0.01
84 105 0.49
85 61 0.29
86 35 0.16
87 10 0.05
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (84 bp):
TTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAG
CCCACAAGTCAGTGGCACC
Found at i:803068 original size:113 final size:113
Alignment explanation
Indices: 802870--803223 Score: 475
Period size: 113 Copynumber: 3.1 Consensus size: 113
802860 GACCTCTTTT
* * * *
802870 CAAAGCCCACAAGTCAGTAGCACCCTTTTCAAAGCCCATAAGTCAGTGGCACCCTTTTTAAAGCT
1 CAAAGCCCACAAGTCAGTAGCAACCTTTTCAAAGCCCATAAGTCAGTGGCACCCCTTTCAAAGCC
* * *
802935 CACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCACCCTC
66 CACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGAACCCTC
* *
802983 CAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAGCCCACAAGTCAGTGGCACCCCTTTCAAAGCC
1 CAAAGCCCACAAGTCAGTAGCAACCTTTTCAAAGCCCATAAGTCAGTGGCACCCCTTTCAAAGCC
*
803048 CACAAGTCAGTGGCATCCTTTTAAAG-CCACAAGTCAGTAGAACCCTTC
66 CACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGAACCC-TC
* * *
803096 CAAAGCCCACAAGTTAGTAGC-ACCATTTTCAAAGCCCATAAGTCAGTGGTA-CCCTTTCAAAAC
1 CAAAGCCCACAAGTCAGTAGCAACC-TTTTCAAAGCCCATAAGTCAGTGGCACCCCTTTCAAAGC
803159 CCACAAGGT-AGTGGCA-CCATTTTAAAGCCCATACAAGTCAGTGGTAACCCTC
65 CCACAA-GTCAGTGGCATCC-TTTTAAAGCCC--ACAAGTCAGTGG-AACCCTC
803211 TCAAAAGCCCACA
1 -C-AAAGCCCACA
803224 CAAGTTGGTG
Statistics
Matches: 215, Mismatches: 16, Indels: 16
0.87 0.06 0.06
Matches are distributed among these distances:
111 2 0.01
112 51 0.24
113 133 0.62
115 13 0.06
116 6 0.03
117 10 0.05
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (113 bp):
CAAAGCCCACAAGTCAGTAGCAACCTTTTCAAAGCCCATAAGTCAGTGGCACCCCTTTCAAAGCC
CACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAGTGGAACCCTC
Found at i:803421 original size:43 final size:43
Alignment explanation
Indices: 803360--803443 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
803350 CTTTCTTCAA
* *
803360 TCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTTAAC
1 TCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTTAAC
*
803403 TCCAATATCGCTGGCCTTGAATCAGCATATTAGCACTTTTA
1 TCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTTA
803444 TCATTTTTCT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.33
Consensus pattern (43 bp):
TCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTTAAC
Found at i:803547 original size:61 final size:61
Alignment explanation
Indices: 803415--803547 Score: 142
Period size: 61 Copynumber: 2.2 Consensus size: 61
803405 CAATATCGCT
** * *
803415 GGCCTTGAATCAGCATATTAGCACTTTTATCATTTTTCTCATCTTTAAGCCCAATGTTACT
1 GGCCTTGAATCAGCATATTAGCACTTTTATCATCCTTATCATCTTTAAGCCCAATGTTACA
** * * * * * *
803476 TACCTCGAATCAGCATATTGGCA-TTCTTCTCATCCTTATCATCTTTAAGTCCAGTGTTGCA
1 GGCCTTGAATCAGCATATTAGCACTT-TTATCATCCTTATCATCTTTAAGCCCAATGTTACA
803537 GGCCTTGAATC
1 GGCCTTGAATC
803548 TGCACATCAG
Statistics
Matches: 56, Mismatches: 15, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
60 2 0.04
61 54 0.96
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (61 bp):
GGCCTTGAATCAGCATATTAGCACTTTTATCATCCTTATCATCTTTAAGCCCAATGTTACA
Found at i:808769 original size:11 final size:11
Alignment explanation
Indices: 808719--808771 Score: 63
Period size: 11 Copynumber: 4.7 Consensus size: 11
808709 ATAATATATC
808719 ATAAATATAAT
1 ATAAATATAAT
* *
808730 ACAAAAAATAAT
1 A-TAAATATAAT
808742 -TAAAATATAAT
1 AT-AAATATAAT
808753 ATAAATATAAT
1 ATAAATATAAT
808764 ATAAATAT
1 ATAAATAT
808772 TTTGATGTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 26 0.74
12 9 0.26
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (11 bp):
ATAAATATAAT
Found at i:813471 original size:6 final size:6
Alignment explanation
Indices: 813462--813518 Score: 96
Period size: 6 Copynumber: 9.5 Consensus size: 6
813452 AATTATGTAC
*
813462 TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTAAT
1 TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT TTTGAT
*
813510 TTTAAT TTT
1 TTTGAT TTT
813519 TAATTTGAAT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.68
Consensus pattern (6 bp):
TTTGAT
Found at i:813489 original size:24 final size:24
Alignment explanation
Indices: 813436--813518 Score: 96
Period size: 24 Copynumber: 3.5 Consensus size: 24
813426 TTTATTAATA
* * *
813436 ATTTTGATTTT-ATTATAATTATG
1 ATTTTGATTTTGATTTTGATTTTG
*
813459 TACTTTGATTTTGATTTTGATTTTG
1 -ATTTTGATTTTGATTTTGATTTTG
*
813484 ATTTTGATTTTGATTTTGATTTTA
1 ATTTTGATTTTGATTTTGATTTTG
*
813508 ATTTTAATTTT
1 ATTTTGATTTT
813519 TAATTTGAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
24 42 0.82
25 9 0.18
ACGTcount: A:0.23, C:0.01, G:0.11, T:0.65
Consensus pattern (24 bp):
ATTTTGATTTTGATTTTGATTTTG
Found at i:813538 original size:7 final size:6
Alignment explanation
Indices: 813466--813539 Score: 67
Period size: 6 Copynumber: 12.2 Consensus size: 6
813456 ATGTACTTTG
* * * * * *
813466 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTA ATTTTA
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA
* *
813514 ATTTTTA ATTTGA ATTTAA ATTTTA A
1 A-TTTTA ATTTTA ATTTTA ATTTTA A
813540 CATTCTTTTC
Statistics
Matches: 63, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
6 57 0.90
7 6 0.10
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (6 bp):
ATTTTA
Found at i:817340 original size:43 final size:43
Alignment explanation
Indices: 817292--817374 Score: 141
Period size: 43 Copynumber: 1.9 Consensus size: 43
817282 ATCAAATTCT
*
817292 AGATTTACTAAATGTCATCTCTCAAACA-TGAATGCATGAATTA
1 AGATTTACTAAATGCCATCTCTCAAA-AGTGAATGCATGAATTA
817335 AGATTTACTAAATGCCATCTCTCAAAAGTGAATGCATGAA
1 AGATTTACTAAATGCCATCTCTCAAAAGTGAATGCATGAA
817375 ATAACTGGAC
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
42 1 0.03
43 37 0.97
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (43 bp):
AGATTTACTAAATGCCATCTCTCAAAAGTGAATGCATGAATTA
Found at i:821964 original size:6 final size:6
Alignment explanation
Indices: 821942--821997 Score: 51
Period size: 6 Copynumber: 8.8 Consensus size: 6
821932 CATTTCATAT
* *
821942 TTTTTC TTTTT- TTTTTC TTTTTC TTTCTTTC TTCTTC ATCTTCTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC -TT-TTTC TTTTTC -T-TTTTC TTTTTC
821993 TTTTT
1 TTTTT
821998 TACCTAACTT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
5 5 0.12
6 23 0.56
7 6 0.15
8 7 0.17
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:821964 original size:17 final size:17
Alignment explanation
Indices: 821942--821997 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
821932 CATTTCATAT
821942 TTTTTCTTTTTTTTTTC
1 TTTTTCTTTTTTTTTTC
* *
821959 TTTTTCTTTCTTTCTTC
1 TTTTTCTTTTTTTTTTC
** * *
821976 TTCATCTTCTCTTTTTC
1 TTTTTCTTTTTTTTTTC
821993 TTTTT
1 TTTTT
821998 TACCTAACTT
Statistics
Matches: 29, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTCTTTTTTTTTTC
Found at i:822392 original size:25 final size:23
Alignment explanation
Indices: 822354--822400 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 23
822344 CTCCTCAATC
822354 GGAAAACCCACTTTGGTTTTTTTTT
1 GGAAAACCCACTTT--TTTTTTTTT
* *
822379 GGAAAGCCCTCTTTTTTTTTTT
1 GGAAAACCCACTTTTTTTTTTT
822401 CGACCCCACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
25 12 0.60
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (23 bp):
GGAAAACCCACTTTTTTTTTTTT
Found at i:823285 original size:32 final size:32
Alignment explanation
Indices: 823229--824538 Score: 1288
Period size: 32 Copynumber: 42.8 Consensus size: 32
823219 AAAATGGTGA
** ** **
823229 TTTGAAAAAGGTTGCCACTAACTTGCATGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
823261 TTTTAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
823293 TTTGAAAAGGGTCGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
823325 TTTGAAATGAGTTGCCACCGACTTATGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
823357 TTTGGAATGGGTTGCCACTGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
823389 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
823421 TTTGAAATGGGTTGCCACCAACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
823453 TTTGAAAAGGGTCGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
823485 TTTGAAATGAGTTGCCACCGACTTATGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
823517 TTTGGAATGGGTTGCCACTGACTTGTGTGAGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
823549 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
823581 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
823613 TTTGAAAAGGGTCGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
823645 TTTGAAATGAGTTGCCACCGACTTATGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
823677 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
823709 TTTGAAATGAGTTGCCACCGACTTATGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* **
823741 TTTGGAATGGGTTGCCACTAACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
** *
823773 TTTGAAATGGGTTAACATCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
823805 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
823837 TTTGAAATGGGTCGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
** * *
823869 TTTGAAATAAGTTGCCACCGACTTATGTGGAC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
823901 TTTGAAATGGGTTGCCACCGACATGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
823933 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
823965 TTTGAAAAGGGTCGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
823997 TTTGAAAAGTGTTGCCACCGAC-T-CGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
824027 TTTGAAA--GGATGCCACTGAC-T-TGTAGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
824055 TTTGAAAAGGGTTGCCACCGACTCGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * *
824087 TTTGAAAAGAG-CGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
824116 TTTGAAA--GGCTGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
824144 TTTGAAA--GGATGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
824172 TTTGAAAAGTGTTGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
** ** *
824202 TTTGAAA--GAATGCCATTGAC-T-CG-GGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
824229 TTCGAAA--GGATGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * **
824257 TTTGAAA-GAG-TGCCACTGAC-T-CATGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
824285 TTTGTAAA--GG-TACCACTGAC-T-CGTGGGC
1 TTTG-AAATGGGTTGCCACCGACTTGTGTGGGC
*
824313 -TTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * **
824340 TTTGAAA-GAG-TGCCACTGAC-T-CATGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* ** *
824368 TTTGAAA-AGG-TGCCATTGACTTGCGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
824398 TTT-AAAAGGAG-TGCCACTGACTTGTGTGGGC
1 TTTGAAATGG-GTTGCCACCGACTTGTGTGGGC
* * *
824429 TTTGAAA-GGG-AGCCACTGAC-T-TATGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
824457 TTCGAAA-GGGGTGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
824486 TCTGAAA-GGG-TGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
824514 TTT-AAAAGGG-TGCCACAGAGTTGTG
1 TTTGAAATGGGTTGCCACCGACTTGTG
824539 GACTTAAAAG
Statistics
Matches: 1124, Mismatches: 133, Indels: 44
0.86 0.10 0.03
Matches are distributed among these distances:
26 3 0.00
27 48 0.04
28 219 0.19
29 48 0.04
30 72 0.06
31 33 0.03
32 701 0.62
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.29
Consensus pattern (32 bp):
TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:824055 original size:28 final size:28
Alignment explanation
Indices: 823235--825643 Score: 812
Period size: 27 Copynumber: 83.2 Consensus size: 28
823225 GTGATTTGAA
* * *
823235 AAAGGTTGCCACTAACTTGCATGGGCTTTT
1 AAAGGATGCCACTGACTTG--TGGGCTTTG
* *
823265 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* *
823297 AAAAGGGTCGCCACCGACTTGTGTGGGCTTTG
1 -AAAGGAT-GCCACTGAC-T-TGTGGGCTTTG
* *
823329 AAATGAGTTGCCACCGACTTATGTGGGCTTTGG
1 AAA-G-GATGCCACTGAC-T-TGTGGGCTTT-G
* *
823362 AATGGGTTGCCACTGACTTGTGTGGGCTTTG
1 AA-AGGATGCCACTGAC-T-TGTGGGCTTTG
* *
823393 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* **
823425 AAATGGGTTGCCACCAACTTGTGTGGGCTTTG
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* *
823457 AAAAGGGTCGCCACCGACTTGTGTGGGCTTTG
1 -AAAGGAT-GCCACTGAC-T-TGTGGGCTTTG
* *
823489 AAATGAGTTGCCACCGACTTATGTGGGCTTTGG
1 AAA-G-GATGCCACTGAC-T-TGTGGGCTTT-G
* *
823522 AATGGGTTGCCACTGACTTGTGTGAGCTTTG
1 AA-AGGATGCCACTGACTTGTG-G-GCTTTG
* *
823553 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* *
823585 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* *
823617 AAAAGGGTCGCCACCGACTTGTGTGGGCTTTG
1 -AAAGGAT-GCCACTGAC-T-TGTGGGCTTTG
* *
823649 AAATGAGTTGCCACCGACTTATGTGGGCTTTG
1 AAA-G-GATGCCACTGAC-T-TGTGGGCTTTG
* *
823681 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* *
823713 AAATGAGTTGCCACCGACTTATGTGGGCTTTGG
1 AAA-G-GATGCCACTGAC-T-TGTGGGCTTT-G
* * *
823746 AATGGGTTGCCACTAACTTGTGTGGGCTTTG
1 AA-AGGATGCCACTGAC-T-TGTGGGCTTTG
* **
823777 AAATGGGT-TAACATCGACTTGTGTGGGCTTTG
1 AAA-GGATGCCAC-T-GAC-T-TGTGGGCTTTG
* *
823809 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* *
823841 AAATGGGTCGCCACCGACTTGTGTGGGCTTTG
1 AAA-GGAT-GCCACTGAC-T-TGTGGGCTTTG
* * * *
823873 AAATAAGTTGCCACCGACTTATGTGGACTTTG
1 -AA-AGGATGCCACTGAC-T-TGTGGGCTTTG
* *
823905 AAATGGGTTGCCACCGACATGTGTGGGCTTTG
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* *
823937 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAA--GGATGCCACTGAC-T-TGTGGGCTTTG
* *
823969 AAAAGGGTCGCCACCGACTTGTGTGGGCTTTG
1 -AAAGGAT-GCCACTGAC-T-TGTGGGCTTTG
* * *
824001 AAAAGTGTTGCCACCGACTCGTGGGCTTTG
1 -AAAG-GATGCCACTGACTTGTGGGCTTTG
*
824031 AAAGGATGCCACTGACTTGTAGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
824059 AAAAGGGTTGCCACCGACTCGTGTGGGCTTTG
1 -AAA-GGATGCCACTGACT--TGTGGGCTTTG
* *
824091 AAAAGAGCGCCACTGACTTGTGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
*
824120 AAAGGCTGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
824148 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
824176 AAAAGTGTTGCCACTGACTTGTGGGCTTTG
1 -AAAG-GATGCCACTGACTTGTGGGCTTTG
* * * *
824206 AAAGAATGCCATTGACTCG-GGGCTTCG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
824233 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
**
824261 AAA-GAGTGCCACTGACTCATGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
* *
824289 TAAAGG-TACCACTGACTCGTGGGC-TTG
1 -AAAGGATGCCACTGACTTGTGGGCTTTG
*
824316 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
**
824344 AAA-GAGTGCCACTGACTCATGGGCTTTG
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG
* *
824372 AAAAGG-TGCCATTGACTTGCGTGGGCTTTA
1 -AAAGGATGCCACTGACTT--GTGGGCTTTG
824402 AAAGGAGTGCCACTGACTTGTGTGGGCTTTG
1 AAAGGA-TGCCACTGAC-T-TGTGGGCTTTG
* *
824433 AAAGGGA-GCCACTGACTTATGGGCTTCG
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* *
824461 AAAGGGGTGCCACTGACTTGTGGGCTCTG
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* *
824490 AAAGGGTGCCACTGACTTGTGGGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
824518 AAAGGGTGCCACAGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
824545 AAAGAGATGCCACGGAGTTATGGAC-TTA
1 AAAG-GATGCCACTGACTTGTGGGCTTTG
* * * * *
824573 AAAGGGTGCCACGGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
824600 AAAGGGTGCCACGGAGTTGTGGTC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
824627 AAAGGGTGCCACAGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
824655 AAAGGGTGCCACAGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
824682 AAAGAGATGCCACTGAGTTATGGAC-TTA
1 AAAG-GATGCCACTGACTTGTGGGCTTTG
* * * * *
824710 AAAGGGTGCCACGGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
824737 AAAGGGTGCCACAGAGTTGTGGTC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
824764 AAAGGGATGCCACGGAGTTGTGGAC-TTA
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * * **
824792 AAAGGGTGCCAC-GAAGTTGTGGACTTAA
1 AAAGGATGCCACTG-ACTTGTGGGCTTTG
* * *
824820 AAAGG-TGCCA-TGGAGTTGTGGACTTTA
1 AAAGGATGCCACT-GACTTGTGGGCTTTG
* * * * *
824847 AAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
824875 AAAGGGTGCCACAGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
824902 AAAGAGATGCCACGGAGTTATGGAC-TTA
1 AAAG-GATGCCACTGACTTGTGGGCTTTG
* * * *
824930 AAAGGGTGCCA-TGGAGTTGTGGAC-TTA
1 AAAGGATGCCACT-GACTTGTGGGCTTTG
* * * * *
824957 AAAGGGTGCCACAGAGTTGTGGTC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
824984 AAAGGGATGCCACGGAGTTGTGGAC-TTA
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * * * *
825012 AAAGGGTGCCACAGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * **
825039 AAAGGGTGCCACGGAGTTGTGGACTTAA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
825067 AAAGG-TGCCACGGAGTTGTGGACATTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * *
825094 AAAGGGTGCCACAGAGTTATGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
825121 AAAGAGATGCCACGGAGTTAT-GGATTTA
1 AAAG-GATGCCACTGACTTGTGGGCTTTG
* * * *
825149 AAAGGGTGCCA-TGGAGTTGTGGAC-TTA
1 AAAGGATGCCACT-GACTTGTGGGCTTTG
* * * * *
825176 AAAGGGTGCCACAGAGTTGTGGTC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
825203 AAAGGGATGCCACGGAGTTGTGGAC-TTA
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * * * *
825231 AAAGGGTGCCACAGAGTTGT-GGTTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
825258 AAAGGGATGCCACGGAGTTGTGGAC-TTA
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * * * *
825286 AAAGGGTGCCACAGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * * *
825313 AAAGGGTGCGACAGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
825340 AAATGG-TGCCACGGAGTTGTGGAC-TTA
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * * * *
825367 AAAGAATGCCACGGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
825394 AAAGGGTGCCACGGAGTTGTGGTC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * ** *
825421 AAAGGATGCCACAGAGTTGTGAAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
825448 AAAGGGATGCCACAGAGTTGTGGAC-TTA
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * * *
825476 AAAGGGTGCCACAGACTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
825503 AAAGGGTGCCACAGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
825530 AAAGGGTGCCACGGAGTTGTGGGC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
825557 AAAGGGTGCCACGGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
825584 AAAGGGTGCCACGGAGTTGTGGAC-TTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * * *
825611 AAAGGGTGCCACGGAGTTGTGGACTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
825639 AAAGG
1 AAAGG
825644 GTTCCGCAGA
Statistics
Matches: 2090, Mismatches: 191, Indels: 198
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.00
27 705 0.34
28 544 0.26
29 64 0.03
30 75 0.04
31 76 0.04
32 565 0.27
33 44 0.02
34 9 0.00
ACGTcount: A:0.24, C:0.17, G:0.33, T:0.26
Consensus pattern (28 bp):
AAAGGATGCCACTGACTTGTGGGCTTTG
Found at i:824319 original size:83 final size:83
Alignment explanation
Indices: 823959--824529 Score: 615
Period size: 83 Copynumber: 6.6 Consensus size: 83
823949 ACCGACTTGT
* * * * *
823959 GTGGGCTTTGAAAAGGGTCGCCACCGACTTGTGTGGGCTTTGAAAAGTGTTGCCACCGACTCGTG
1 GTGGGCTTTG-AAAGGAT-GCCACTGAC-T-TGTGGGCTTTG-AAAGAG-TGCCACTGACTCATG
*
824024 GGCTTTGAAAGGATGCCACTGACTT
60 GGCTTTGAAAGG-TGCCACTGACTC
* * * * **
824049 GTAGGCTTTGAAAAGGGTTGCCACCGACTCGTGTGGGCTTTGAAAAGAGCGCCACTGACTTGTGG
1 GTGGGCTTTG-AAA-GGATGCCACTGACT--TGTGGGCTTTG-AAAGAGTGCCACTGACTCATGG
*
824114 GCTTTGAAAGGCTGCCACTGACTT
61 GCTTTGAAAGG-TGCCACTGACTC
* **
824138 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGTGTTGCCACTGACTTGTGGGCT
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGAG-TGCCACTGACTCATGGGCT
* *
824203 TTGAAAGAATGCCATTGACTC
64 TTGAAAG-GTGCCACTGACTC
*
824224 G-GGGCTTCGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTCATGGGCTTT
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTCATGGGCTTT
*
824288 GTAAAGGTACCACTGACTC
66 G-AAAGGTGCCACTGACTC
*
824307 GTGGGC-TTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTCATGGGCTTT
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTCATGGGCTTT
*
824371 GAAAAGGTGCCATTGACTTGC
66 G-AAAGGTGCCACTGAC-T-C
* * * *
824392 GTGGGCTTTAAAAGGAGTGCCACTGACTTGTGTGGGCTTTGAAAGGGAGCCACTGACTTATGGGC
1 GTGGGCTTTGAAAGGA-TGCCACTGAC-T-TGTGGGCTTTGAAAGAGTGCCACTGACTCATGGGC
* *
824457 TTCGAAAGGGGTGCCACTGACTT
63 TTTGAAA--GGTGCCACTGACTC
* * * *
824480 GTGGGCTCTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCAC
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCAC
824530 AGAGTTGTGG
Statistics
Matches: 427, Mismatches: 40, Indels: 33
0.85 0.08 0.07
Matches are distributed among these distances:
83 101 0.24
84 14 0.03
85 80 0.19
86 44 0.10
87 32 0.07
88 20 0.05
89 82 0.19
90 51 0.12
91 3 0.01
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.27
Consensus pattern (83 bp):
GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTCATGGGCTTT
GAAAGGTGCCACTGACTC
Found at i:824599 original size:55 final size:54
Alignment explanation
Indices: 824465--826262 Score: 2615
Period size: 55 Copynumber: 33.0 Consensus size: 54
824455 GCTTCGAAAG
* * * * * * *
824465 GGGTGCCACTGACTTGTGGGCTCTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAA
1 GGGTGCCACGGAGTTGTGGACT-TAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
* * *
824521 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAA
*
824576 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
824630 GGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* * *
824685 GAGATGCCACTGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
824740 GGGTGCCACAGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAA
* * *
824795 GGGTGCCACGAAGTTGTGGACTTAAAAAGGTGCCATGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
*
824850 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* * *
824905 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCATGGAGTTGTGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
824960 GGGTGCCACAGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAA
*
825015 GGGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* * *
825069 AGGTGCCACGGAGTTGTGGACATTAAAAGGGTGCCACAGAGTTATGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* * * *
825124 GAGATGCCACGGAGTTATGGATTTAAAAGGGTGCCATGGAGTTGTGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
825179 GGGTGCCACAGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAA
* **
825234 GGGTGCCACAGAGTTGTGGTTTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAA
* * *
825289 GGGTGCCACAGAGTTGTGGACTTAAAAGGGTGCGACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* **
825343 TGGTGCCACGGAGTTGTGGACTTAAAAGAATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* * * *
825397 GGGTGCCACGGAGTTGTGGTCTTAAAAGGATGCCACAGAGTTGTGAACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* * *
825451 GGGATGCCACAGAGTTGTGGACTTAAAAGGGTGCCACAGACTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
825506 GGGTGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGGCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
825560 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* * *
825614 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTTCCGCAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* * *
825669 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGATGTGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
825724 GGGTG-C-C--A----TGGACTTAAAAGGGTGCCACAGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
825770 GGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
*
825825 GGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
** * *
825879 GAATGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
*
825933 GGGATGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
*
825988 GGGTGCCACGGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAA
* *
826043 CGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTTAAAA
1 -GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
826098 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
* *
826152 GGGTGACACGGAGTTGTGGACTAAAAAGGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
* * * *
826207 GGGTGCCA-GAGAGTTGTGGACTTAAAAAGATGCCACAGAGTTATGGACTTTAAAA
1 GGGTGCCACG-GAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAA
826262 G
1 G
826263 AAAATGCCAC
Statistics
Matches: 1589, Mismatches: 125, Indels: 57
0.90 0.07 0.03
Matches are distributed among these distances:
46 38 0.02
47 2 0.00
48 1 0.00
49 1 0.00
50 1 0.00
51 1 0.00
52 1 0.00
53 1 0.00
54 646 0.41
55 742 0.47
56 155 0.10
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.23
Consensus pattern (54 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
Found at i:824628 original size:82 final size:81
Alignment explanation
Indices: 824465--826262 Score: 2615
Period size: 82 Copynumber: 22.0 Consensus size: 81
824455 GCTTCGAAAG
* * * * * * *
824465 GGGTGCCACTGACTTGTGGGCTCTGAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCAC
1 GGGTGCCACGGAGTTGTGGACT-TAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCAC
*
824530 AGAGTTGTGGACTTAAAA
64 GGAGTTGTGGACTTAAAA
* *
824548 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
*
824613 GAGTTGTGGTCTTAAAA
65 GAGTTGTGGACTTAAAA
* * *
824630 GGGTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCAC
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCAC
* *
824695 TGAGTTATGGACTTAAAA
64 GGAGTTGTGGACTTAAAA
* *
824713 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGTCTTAAAAGGGATGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACG
824778 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* * *
824795 GGGTGCCACGAAGTTGTGGACTTAAAAAGGTGCCATGGAGTTGTGGACTTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACG
824860 GAGTTGTGGACTTTAAAA
65 GAGTTGTGGAC-TTAAAA
* * * *
824878 GGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCATG
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
824943 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* * *
824960 GGGTGCCACAGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
825025 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
825042 GGGTGCCACGGAGTTGTGGACTTAAAAAGGTGCCACGGAGTTGTGGACATTAAAAGGGTGCCACA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACG
*
825107 GAGTTATGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* * * * *
825124 GAGATGCCACGGAGTTATGGATTTAAAAGGGTGCCATGGAGTTGTGGACTTAAAAGGGTGCCACA
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
*
825189 GAGTTGTGGTCTTAAAA
65 GAGTTGTGGACTTAAAA
* **
825206 GGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACAGAGTTGTGGTTTTAAAAGGGATGCCAC
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCAC
825271 GGAGTTGTGGACTTAAAA
64 GGAGTTGTGGACTTAAAA
* * * *
825289 GGGTGCCACAGAGTTGTGGACTTAAAAGGGTGCGACAGAGTTGTGGACTTAAAATGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
825354 AGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAA
** * * *
825370 GAATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAAGGATGCCACAG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
825435 AGTTGTGAACTTAAAA
66 AGTTGTGGACTTAAAA
* * * *
825451 GGGATGCCACAGAGTTGTGGACTTAAAAGGGTGCCACAGACTTGTGGACTTAAAAGGGTGCCACA
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
825516 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
*
825533 GGGTGCCACGGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
825598 AGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAA
* * * *
825614 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTTCCGCAGAGTTGTGGACTTAAAAGAGATGCCAC
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCAC
*
825679 GGAGTTATGGACTTAAAA
64 GGAGTTGTGGACTTAAAA
* *
825697 GGGTGCCACGGAGATGTGGACTTAAAAGGGTG-C-C--A----TGGACTTAAAAGGGTGCCACAG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
825754 AGTTGTGGTCTTAAAA
66 AGTTGTGGACTTAAAA
825770 GGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
825835 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* ** *
825852 AGGTGCCACGGAGTTGTGGACTTAAAAGAATGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
825917 AGTTGTGGTCTTAAAA
66 AGTTGTGGACTTAAAA
*
825933 GGGATGCCACAGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
825998 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
826015 GAGATGCCACGGAGTTGTGGACTTAAAACGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCAC
1 G-GGTGCCACGGAGTTGTGGACTTAAAA-GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCAC
*
826080 GGAGTTATGGACTTAAAA
64 GGAGTTGTGGACTTAAAA
*
826098 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGACACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
826163 AGTTGTGGACTAAAAA
66 AGTTGTGGACTTAAAA
* *
826179 GGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCA-GAGAGTTGTGGACTTAAAAAGATGCCAC
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACG-GAGTTGTGGACTTAAAAGGGTGCCAC
* *
826243 AGAGTTATGGACTTTAAAA
64 GGAGTTGTGGAC-TTAAAA
826262 G
1 G
826263 AAAATGCCAC
Statistics
Matches: 1555, Mismatches: 130, Indels: 60
0.89 0.07 0.03
Matches are distributed among these distances:
73 25 0.02
74 40 0.03
75 1 0.00
76 1 0.00
78 2 0.00
80 1 0.00
81 376 0.24
82 774 0.50
83 302 0.19
84 33 0.02
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.23
Consensus pattern (81 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
AGTTGTGGACTTAAAA
Found at i:825737 original size:19 final size:19
Alignment explanation
Indices: 825713--825750 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
825703 CACGGAGATG
825713 TGGACTTAAAAGGGTGCCA
1 TGGACTTAAAAGGGTGCCA
825732 TGGACTTAAAAGGGTGCCA
1 TGGACTTAAAAGGGTGCCA
825751 CAGAGTTGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.21
Consensus pattern (19 bp):
TGGACTTAAAAGGGTGCCA
Found at i:826263 original size:27 final size:27
Alignment explanation
Indices: 824465--826262 Score: 2615
Period size: 27 Copynumber: 66.0 Consensus size: 27
824455 GCTTCGAAAG
* * * *
824465 GGGTGCCACTGACTTGTGGGCTCTGAAA
1 GGGTGCCACGGAGTTGTGGACT-TAAAA
* * *
824493 GGGTGCCACTGACTTGTGGGCTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
824521 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
824548 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
824576 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
824603 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
824630 GGGTGCCACAGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
824658 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* * *
824685 GAGATGCCACTGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
824713 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
824740 GGGTGCCACAGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
824767 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
*
824795 GGGTGCCACGAAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
824822 AGGTGCCATGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
824850 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
824878 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
824905 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
824933 GGGTGCCATGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
824960 GGGTGCCACAGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
824987 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
*
825015 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
825042 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
825069 AGGTGCCACGGAGTTGTGGACATTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
* *
825097 GGGTGCCACAGAGTTATGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* * *
825124 GAGATGCCACGGAGTTATGGATTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
825152 GGGTGCCATGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
825179 GGGTGCCACAGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
825206 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
* **
825234 GGGTGCCACAGAGTTGTGGTTTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
825261 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
*
825289 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
825316 GGGTGCGACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
825343 TGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
**
825370 GAATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
825397 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* * *
825424 GGATGCCACAGAGTTGTGAACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
825451 GGGATGCCACAGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
* *
825479 GGGTGCCACAGACTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
825506 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
825533 GGGTGCCACGGAGTTGTGGGCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
825560 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
825587 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
825614 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
* * *
825642 GGGTTCCGCAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
825669 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
825697 GGGTGCCACGGAGATGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
825724 GGGTG-C-C--A----TGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
825743 GGGTGCCACAGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
825770 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
825798 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
825825 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
825852 AGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
** *
825879 GAATGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
825906 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
825933 GGGATGCCACAGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
825961 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
825988 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
826015 GAGATGCCACGGAGTTGTGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
826043 CGGATGCCACGGAGTTGTGGACTTAAAA
1 -GGGTGCCACGGAGTTGTGGACTTAAAA
*
826071 GGGTGCCACGGAGTTATGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
826098 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
826125 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
826152 GGGTGACACGGAGTTGTGGACTAAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
826179 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
826207 GGGTGCCA-GAGAGTTGTGGACTTAAAA
1 GGGTGCCACG-GAGTTGTGGACTTAAAA
* * * *
826234 AGATGCCACAGAGTTATGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
826262 G
1 G
826263 AAAATGCCAC
Statistics
Matches: 1614, Mismatches: 125, Indels: 62
0.90 0.07 0.03
Matches are distributed among these distances:
19 16 0.01
20 1 0.00
21 1 0.00
23 2 0.00
25 1 0.00
26 1 0.00
27 1046 0.65
28 544 0.34
29 2 0.00
ACGTcount: A:0.29, C:0.14, G:0.34, T:0.23
Consensus pattern (27 bp):
GGGTGCCACGGAGTTGTGGACTTAAAA
Found at i:834055 original size:20 final size:22
Alignment explanation
Indices: 834032--834087 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
834022 TTTTATATTT
*
834032 TTTCTTTTTTT-TTCTT-TTTC
1 TTTCTTTTTTTCATCTTCTTTC
834052 TTTCTTTCTTCTTCATCTTCTTTC
1 TTTCTTT-TT-TTCATCTTCTTTC
834076 TTTCTTTTTTTC
1 TTTCTTTTTTTC
834088 CTAACTTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 7 0.23
21 2 0.06
22 5 0.16
23 6 0.19
24 11 0.35
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTCTTTTTTTCATCTTCTTTC
Found at i:834080 original size:17 final size:15
Alignment explanation
Indices: 834032--834081 Score: 52
Period size: 14 Copynumber: 3.4 Consensus size: 15
834022 TTTTATATTT
*
834032 TTTCTT-TTTTTTTC
1 TTTCTTCTTTCTTTC
834046 TTT-TTCTTTCTTTC
1 TTTCTTCTTTCTTTC
834060 -TTCTTCATCTTCTTTC
1 TTTCTTC-T-TTCTTTC
834076 TTTCTT
1 TTTCTT
834082 TTTTTCCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
13 4 0.13
14 13 0.43
15 1 0.03
16 7 0.23
17 5 0.17
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTCTTCTTTCTTTC
Found at i:834482 original size:25 final size:23
Alignment explanation
Indices: 834444--834489 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
834434 CTCCTCAATC
834444 GGAAAACCCACTTTGGTTTTTTTTG
1 GGAAAACCCACTTT--TTTTTTTTG
* *
834469 GGAAAGCCCTCTTTTTTTTTT
1 GGAAAACCCACTTTTTTTTTT
834490 CGACCCCACC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 7 0.37
25 12 0.63
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.48
Consensus pattern (23 bp):
GGAAAACCCACTTTTTTTTTTTG
Found at i:835528 original size:44 final size:44
Alignment explanation
Indices: 835441--835525 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
835431 ATTGCACCAA
* * *
835441 ATGATAAACCACACAAGTCACAAATGTTTTGCCTTGCTTTTGGC
1 ATGATAAAACACACAAGTCACAAATGTTTGGCCATGCTTTTGGC
* *
835485 ATGATAAAACACACAAGTCACAACTGTTTGGGCATGTCTTT
1 ATGATAAAACACACAAGTCACAAATGTTTGGCCATG-CTTT
835526 GGCCAAATTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
44 31 0.89
45 4 0.11
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (44 bp):
ATGATAAAACACACAAGTCACAAATGTTTGGCCATGCTTTTGGC
Found at i:836815 original size:99 final size:99
Alignment explanation
Indices: 836692--836903 Score: 263
Period size: 99 Copynumber: 2.1 Consensus size: 99
836682 CTCTCGGAGG
* * *
836692 AATAGGGTTAGAGT-TC-TCCCGACGA-AGACAATCTAGGTGAAAATAAGATTTAAAATCTTGAC
1 AATAGGGTTAGAGTATCAT--CGACGATA-ACAATCCAAGTGAAAATAAGACTTAAAATCTTGAC
* * *
836754 ATG-TTAAAAAAATGAGGTTGGAGTATCCTTTTA-GAAA
63 AAGTTTAAAAAAAAG-GGTTAGAGTAT-CTTTTAGGAAA
* *
836791 AATGGGGTTGGAGTATCATCGACGATAACAATCCAAGTGAAAATAAGACTTAAAATCTTGACAAG
1 AATAGGGTTAGAGTATCATCGACGATAACAATCCAAGTGAAAATAAGACTTAAAATCTTGACAAG
*
836856 TTTAAAAAAAAGGGTTAGAGTATCTTTTAGGAAG
66 TTTAAAAAAAAGGGTTAGAGTATCTTTTAGGAAA
836890 AATAGGGTTAGAGT
1 AATAGGGTTAGAGT
836904 GTCCCCAATG
Statistics
Matches: 97, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
98 6 0.06
99 77 0.79
100 13 0.13
101 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (99 bp):
AATAGGGTTAGAGTATCATCGACGATAACAATCCAAGTGAAAATAAGACTTAAAATCTTGACAAG
TTTAAAAAAAAGGGTTAGAGTATCTTTTAGGAAA
Found at i:836988 original size:97 final size:96
Alignment explanation
Indices: 836843--837096 Score: 249
Period size: 97 Copynumber: 2.6 Consensus size: 96
836833 ATAAGACTTA
* ** * ** * *
836843 AAATCTTGACAAGTTTAAAAAAAAGGGTTAGAGTATCTTTTAGGAAGAATAGGGTTAGAGTGTCC
1 AAATCTTGACAAATTTAAAAACGA-GGTTAGAATATC-CCTCGGAAGAATAGGGTTGGAGTGTCC
** * **
836908 CCAATGATGATAATTCCGACAAAAATAAAATTT
64 CCAACAATGACAATTCAAACAAAAATAAAATTT
* * *
836941 AAATCTTGATAAATTTAAAAACG-GGTTTAGAATATCCCTTCGGAAGAATGGGGTTGGAGTGTCT
1 AAATCTTGACAAATTTAAAAACGAGG-TTAGAATATCCC-TCGGAAGAATAGGGTTGGAGTGTCC
* * *
837005 CCGACAATGACAATTCAAATAAAAATAAGATTT
64 CCAACAATGACAATTCAAACAAAAATAAAATTT
* * * * *
837038 AAATCTTGACAAGTTTAAAAACGAGGTTGGAGTATCCCTCAGAAAAATAGGGTTGGAGT
1 AAATCTTGACAAATTTAAAAACGAGGTTAGAATATCCCTCGGAAGAATAGGGTTGGAGT
837097 ATCCTCGATA
Statistics
Matches: 127, Mismatches: 26, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
96 20 0.16
97 86 0.68
98 21 0.17
ACGTcount: A:0.40, C:0.11, G:0.21, T:0.28
Consensus pattern (96 bp):
AAATCTTGACAAATTTAAAAACGAGGTTAGAATATCCCTCGGAAGAATAGGGTTGGAGTGTCCCC
AACAATGACAATTCAAACAAAAATAAAATTT
Found at i:837102 original size:25 final size:26
Alignment explanation
Indices: 837062--837110 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
837052 TTAAAAACGA
837062 GGTTGGAGTATCCCTCAGA-AAAATAG
1 GGTTGGAGTATCCCTC-GATAAAATAG
837088 GGTTGGAGTAT-CCTCGATAAAAT
1 GGTTGGAGTATCCCTCGATAAAAT
837111 TTTGATGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 2 0.09
25 9 0.41
26 11 0.50
ACGTcount: A:0.33, C:0.14, G:0.27, T:0.27
Consensus pattern (26 bp):
GGTTGGAGTATCCCTCGATAAAATAG
Found at i:839610 original size:20 final size:21
Alignment explanation
Indices: 839585--839636 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
839575 ACAAGGTCTC
*
839585 GTATCGATACATTCACTT-AT
1 GTATCGATACATTAACTTGAT
*
839605 GTATCGATACATTAACTTGTT
1 GTATCGATACATTAACTTGAT
839626 GTATCGATACA
1 GTATCGATACA
839637 AATTGTAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (21 bp):
GTATCGATACATTAACTTGAT
Found at i:844898 original size:75 final size:75
Alignment explanation
Indices: 844775--844924 Score: 291
Period size: 75 Copynumber: 2.0 Consensus size: 75
844765 CATGCATTTT
844775 CGCATTATATCCCATGTGTTTTCCACGTTCCATACATACACAAGTCTCTAATGTGATATTGCTAT
1 CGCATTATATCCCATGTGTTTTCCACGTTCCATACATACACAAGTCTCTAATGTGATATTGCTAT
844840 AAACAAACAC
66 AAACAAACAC
*
844850 CGCATTATATCCCATGTGTTTTCCACGTTCCATACATACACAAGTCTCTAATGTGATATTGTTAT
1 CGCATTATATCCCATGTGTTTTCCACGTTCCATACATACACAAGTCTCTAATGTGATATTGCTAT
844915 AAACAAACAC
66 AAACAAACAC
844925 ATGCATTCAC
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.33
Consensus pattern (75 bp):
CGCATTATATCCCATGTGTTTTCCACGTTCCATACATACACAAGTCTCTAATGTGATATTGCTAT
AAACAAACAC
Found at i:849003 original size:15 final size:15
Alignment explanation
Indices: 848970--849001 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
848960 TATTTAAATT
848970 AAATTATAAAATATA
1 AAATTATAAAATATA
848985 AAATTAT-AAATATA
1 AAATTATAAAATATA
848999 AAA
1 AAA
849002 ATAATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATTATAAAATATA
Found at i:850240 original size:2 final size:2
Alignment explanation
Indices: 850233--850291 Score: 91
Period size: 2 Copynumber: 28.5 Consensus size: 2
850223 TGTATGTGAG
850233 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
850275 GAT AT AA AT AT GAT AT A
1 -AT AT AT AT AT -AT AT A
850292 AAAAAATTAA
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
2 49 0.92
3 4 0.08
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:850330 original size:10 final size:10
Alignment explanation
Indices: 850233--850356 Score: 87
Period size: 10 Copynumber: 12.4 Consensus size: 10
850223 TGTATGTGAG
*
850233 ATATATATAT
1 ATATATAAAT
*
850243 ATATATATAT
1 ATATATAAAT
*
850253 ATATATATAT
1 ATATATAAAT
*
850263 ATATATATAT
1 ATATATAAAT
850273 ATGATATAAAT
1 AT-ATATAAAT
*
850284 ATGATATAAAA
1 AT-ATATAAAT
*
850295 AAAT-TAAA-
1 ATATATAAAT
850303 ATATAATATAAT
1 ATAT-ATA-AAT
*
850315 AT-TATAAAA
1 ATATATAAAT
850324 ATATATAAAT
1 ATATATAAAT
*
850334 AT-TTTAAA-
1 ATATATAAAT
*
850342 ATTTATATAAT
1 ATATATA-AAT
850353 ATAT
1 ATAT
850357 TATTAATTGA
Statistics
Matches: 96, Mismatches: 9, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
8 5 0.05
9 16 0.17
10 49 0.51
11 24 0.25
12 2 0.02
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (10 bp):
ATATATAAAT
Found at i:850336 original size:19 final size:19
Alignment explanation
Indices: 850300--850359 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 19
850290 TAAAAAAATT
850300 AAAATATAATATAATATTATA
1 AAAATAT-ATA-AATATTATA
*
850321 AAAATATATAAATATTTTA
1 AAAATATATAAATATTATA
*
850340 AAATTTATATAATATATTAT
1 AAA-ATATATAA-ATATTAT
850360 TAATTGATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.32
20 10 0.29
21 13 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAATATATAAATATTATA
Found at i:850804 original size:4 final size:4
Alignment explanation
Indices: 850797--850827 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
850787 CAAAATAAAT
850797 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
850828 TTGGTTTGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:851887 original size:14 final size:14
Alignment explanation
Indices: 851838--851898 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
851828 TTTTATAAAG
*
851838 AAAAATATTAAATT
1 AAAAAAATTAAATT
** *
851852 ATTAAGATTAAATTT
1 AAAAAAATTAAA-TT
*
851867 TAAAAAA-TATAATT
1 AAAAAAATTA-AATT
851881 AAAAAAATTAAATT
1 AAAAAAATTAAATT
851895 AAAA
1 AAAA
851899 TATGGGCTGC
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
14 27 0.75
15 9 0.25
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (14 bp):
AAAAAAATTAAATT
Found at i:852858 original size:103 final size:103
Alignment explanation
Indices: 852679--852865 Score: 257
Period size: 103 Copynumber: 1.8 Consensus size: 103
852669 CTAATAAACA
* * * ** * *
852679 TAATTTTAATAGTGACATGGGATAAAAATTTCTTCACAAACCAATGCATTCTACAATTCATCATC
1 TAATTGTAATAATGACATGAGATAAAAATTTCTTCACAAAAAAAGGCATTCTACAATTCATCACC
** *
852744 GCTAAAGTGTTAAATTAATAGTAAAGATGAAAAAAAAT
66 AATAAAGTGTTAAACTAATAGTAAAGATGAAAAAAAAT
* **
852782 TAATTGTAATAATGACATGAGATAAAAATTTCTTCACAAAAAAAGGCATTTTGTAATTCATCACC
1 TAATTGTAATAATGACATGAGATAAAAATTTCTTCACAAAAAAAGGCATTCTACAATTCATCACC
852847 AATAAAGTGTTAAACTAAT
66 AATAAAGTGTTAAACTAAT
852866 GAAAAAAAAA
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
103 71 1.00
ACGTcount: A:0.45, C:0.12, G:0.11, T:0.32
Consensus pattern (103 bp):
TAATTGTAATAATGACATGAGATAAAAATTTCTTCACAAAAAAAGGCATTCTACAATTCATCACC
AATAAAGTGTTAAACTAATAGTAAAGATGAAAAAAAAT
Found at i:854651 original size:33 final size:32
Alignment explanation
Indices: 854595--854662 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
854585 GTAGCTAAAT
*
854595 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
854627 TTGTATGGATACATCACAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
854660 TTG
1 TTG
854663 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 12 0.36
33 21 0.64
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:861523 original size:13 final size:13
Alignment explanation
Indices: 861505--861529 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
861495 TTTTCCAGAT
861505 TGTATCGATACAA
1 TGTATCGATACAA
861518 TGTATCGATACA
1 TGTATCGATACA
861530 TTGCTTTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:862464 original size:20 final size:20
Alignment explanation
Indices: 862439--862492 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
862429 ATATCAATAC
**
862439 AATGTATCGATACATGACTA
1 AATGTATCGATACATGAAAA
*
862459 AATGTATCGATACTTGAAAA
1 AATGTATCGATACATGAAAA
862479 AATGTATCGATACA
1 AATGTATCGATACA
862493 AGTCATTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACATGAAAA
Found at i:862547 original size:17 final size:17
Alignment explanation
Indices: 862525--862586 Score: 60
Period size: 17 Copynumber: 3.7 Consensus size: 17
862515 TAGCTAAATT
862525 TGTATCGATACACAATA
1 TGTATCGATACACAATA
862542 TGTATCGAT--AC-AT-
1 TGTATCGATACACAATA
*
862555 TGTATCGATACATCACAAAA
1 TGTATCGAT--A-CACAATA
862575 TGTATCGATACA
1 TGTATCGATACA
862587 TTGGCTTGTA
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
13 9 0.24
14 2 0.05
15 2 0.05
17 11 0.30
18 3 0.08
19 1 0.03
20 9 0.24
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.31
Consensus pattern (17 bp):
TGTATCGATACACAATA
Found at i:862560 original size:13 final size:13
Alignment explanation
Indices: 862542--862567 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
862532 ATACACAATA
862542 TGTATCGATACAT
1 TGTATCGATACAT
862555 TGTATCGATACAT
1 TGTATCGATACAT
862568 CACAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:862578 original size:33 final size:30
Alignment explanation
Indices: 862524--862589 Score: 96
Period size: 33 Copynumber: 2.1 Consensus size: 30
862514 GTAGCTAAAT
*
862524 TTGTATCGATACACAATATGTATCGATACA
1 TTGTATCGATACACAAAATGTATCGATACA
862554 TTGTATCGATACATCACAAAATGTATCGATACA
1 TTGTATCGAT--A-CACAAAATGTATCGATACA
862587 TTG
1 TTG
862590 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 10 0.31
32 1 0.03
33 21 0.66
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (30 bp):
TTGTATCGATACACAAAATGTATCGATACA
Found at i:866384 original size:166 final size:165
Alignment explanation
Indices: 866127--866683 Score: 720
Period size: 166 Copynumber: 3.4 Consensus size: 165
866117 TTTTCTTTTT
* * * * * *
866127 CGTAAATTTTTTCG-GGAGGATTTTTCTTAATTTTTAATTTTTAAAATTCATCAAATATTTTTAT
1 CGTAAATTTTTTCGAGG-GGATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAACATTATCAT
* * *
866191 TTATTTCACATTAATTAATTTTTTAAAAATTCATTCATTTTCATTCATTTTTGATTTTTTTCCTT
65 TTATTTCATATTAATTCAGTTTTTAAAAATTCATTCATTTTCATTCATTTTTGATTTTTTTCCTT
*
866256 GAAGTTCCCCTTTTTTTAAAATACAGTGTTTTCTACTC
130 GAAATT-CCCTTTTTTTAAAATAC-GTGTTTTCTACTC
* * * * *
866294 CATAAATTTTGTCGAGGGGATTTTTCTCAGTTTTCAATTTTTAAAATTTAT-AAACATCATCATA
1 CGTAAATTTTTTCGAGGGGATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAACATTATCATT
* * *
866358 TATTTCATATTAATTCAGTTTTTAAAAATTCATTCATTTTCA-TGA--GTT--TTTTTTTCCTTA
66 TATTTCATATTAATTCAGTTTTTAAAAATTCATTCATTTTCATTCATTTTTGATTTTTTTCCTTG
*
866418 AAATT--CTTTTTTTTAAATACGGTGTTTTCTACTC
131 AAATTCCCTTTTTTTAAAATAC-GTGTTTTCTACTC
* * * *
866452 CGTAAATTTTTTCGAAGGGATTTTTCTCGGTTTTTAATTTTTAAAATTCATTAAACATTATCATT
1 CGTAAATTTTTTCGAGGGGATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAACATTATCATT
*
866517 TATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATTCATTTTTGA-TTTTTTCCTTG
66 TATTTCATATTAATTCAGTTTTTAAAAATTCATTCATTTTCATTCATTTTTGATTTTTTTCCTTG
* ** *
866581 AAATTCTCATTTTTTCGAAATACGTTATTTTCTACTC
131 AAATTC-CCTTTTTTTAAAATACG-TGTTTTCTACTC
* *
866618 TGTAAATTTTTTCGAGGGGATTTTTCTCAGTTTTCAAATTTTAAAATTCATCAAACATTATCATT
1 CGTAAATTTTTTCGAGGGGATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAACATTATCATT
866683 T
66 T
866684 GTAAATTTTT
Statistics
Matches: 337, Mismatches: 42, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
158 72 0.21
159 52 0.15
160 2 0.01
161 15 0.04
162 2 0.01
163 17 0.05
165 3 0.01
166 130 0.39
167 42 0.12
168 2 0.01
ACGTcount: A:0.28, C:0.13, G:0.08, T:0.52
Consensus pattern (165 bp):
CGTAAATTTTTTCGAGGGGATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAACATTATCATT
TATTTCATATTAATTCAGTTTTTAAAAATTCATTCATTTTCATTCATTTTTGATTTTTTTCCTTG
AAATTCCCTTTTTTTAAAATACGTGTTTTCTACTC
Found at i:866689 original size:65 final size:65
Alignment explanation
Indices: 866618--866748 Score: 235
Period size: 65 Copynumber: 2.0 Consensus size: 65
866608 TTTTCTACTC
*
866618 TGTAAATTTTTTCGAGGGGATTTTTCTCAGTTTTCAAATTTTAAAATTCATCAAACATTATCATT
1 TGTAAATTTTTTCGAGGGAATTTTTCTCAGTTTTCAAATTTTAAAATTCATCAAACATTATCATT
* *
866683 TGTAAATTTTTTCGAGGGAATTTTTCTCAGTTTTCAATTTTTAAAATTTATCAAACATTATCATT
1 TGTAAATTTTTTCGAGGGAATTTTTCTCAGTTTTCAAATTTTAAAATTCATCAAACATTATCATT
866748 T
1 T
866749 ATTTCATATT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 63 1.00
ACGTcount: A:0.31, C:0.11, G:0.10, T:0.48
Consensus pattern (65 bp):
TGTAAATTTTTTCGAGGGAATTTTTCTCAGTTTTCAAATTTTAAAATTCATCAAACATTATCATT
Found at i:866890 original size:231 final size:231
Alignment explanation
Indices: 866453--866900 Score: 627
Period size: 231 Copynumber: 1.9 Consensus size: 231
866443 TTTCTACTCC
* * *
866453 GTAAATTTTTTCGAAGGGATTTTTCTCGGTTTTTAATTTTTAAAATTCATTAAACATTATCATTT
1 GTAAATTTTTTCGAAGGGATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAACATTATCATTT
* *
866518 ATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTTCATTCATTTTTGATTTTTTCCTTGAA
66 ATTTCATATTAATTCAGTTTTCAAAAAGTCATTCATTTTCATTCAGTTTTGATTTTTTCCTTGAA
* * *
866583 ATTCTCATTTTTTCGAAATACGTTATTTTCTACTCTGTAAATTTTTTCGAGGGGATTTTTCTCAG
131 ATTCCCATTTTTTCGAAAAACG-TATTTTCTACTCTGTAAATTTTTTCGAGGAGATTTTTCTCAG
* * *
866648 TTTTCAAA-TTTTAAAATTCATCAAACATTATCATTT
195 GTTTAAAATTTTTAAAACTCATCAAACATTATCATTT
*
866684 GTAAATTTTTTCG-AGGGAATTTTTCTCAGTTTTCAATTTTTAAAATTTATCAAACATTATCATT
1 GTAAATTTTTTCGAAGGG-ATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAACATTATCATT
* **
866748 TATTTCATATTAATTCAGTTTTCAAAAAGTCATTCATTTTCA-TGAGTTTTGCATTTTTTTGTTG
65 TATTTCATATTAATTCAGTTTTCAAAAAGTCATTCATTTTCATTCAGTTTTG-ATTTTTTCCTTG
* * * *
866812 AAATTCCCTTTTTTTCTAAGAAACCG-AGTTTTCTTCTCTGTGAATTTTTTCGAGGAGATTTTTC
129 AAATTCCCATTTTTTCGAA-AAA-CGTA-TTTTCTACTCTGTAAATTTTTTCGAGGAGATTTTTC
*
866876 T-TGGTTTAAAATTTTTAAAACTCAT
191 TCAGGTTTAAAATTTTTAAAACTCAT
866901 ATAATGTTGT
Statistics
Matches: 191, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
230 11 0.06
231 130 0.68
232 48 0.25
233 2 0.01
ACGTcount: A:0.28, C:0.13, G:0.10, T:0.50
Consensus pattern (231 bp):
GTAAATTTTTTCGAAGGGATTTTTCTCAGTTTTCAATTTTTAAAATTCATCAAACATTATCATTT
ATTTCATATTAATTCAGTTTTCAAAAAGTCATTCATTTTCATTCAGTTTTGATTTTTTCCTTGAA
ATTCCCATTTTTTCGAAAAACGTATTTTCTACTCTGTAAATTTTTTCGAGGAGATTTTTCTCAGG
TTTAAAATTTTTAAAACTCATCAAACATTATCATTT
Found at i:867331 original size:11 final size:11
Alignment explanation
Indices: 867290--867331 Score: 66
Period size: 11 Copynumber: 3.7 Consensus size: 11
867280 GCAAAGTGAG
867290 AAGAAAAAGAGA
1 AAGAAAAA-AGA
*
867302 AAGAAAAGAGA
1 AAGAAAAAAGA
867313 AAGAAAAAAGA
1 AAGAAAAAAGA
867324 AAGAAAAA
1 AAGAAAAA
867332 TAGTGAAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
11 21 0.75
12 7 0.25
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAGA
Found at i:879280 original size:61 final size:60
Alignment explanation
Indices: 879215--879382 Score: 194
Period size: 61 Copynumber: 2.8 Consensus size: 60
879205 GATGAGAAGA
* * ** *
879215 GTGCCAA-AGTGCTGATTCAAGGTCAGTGACGTTGGGCTTAAGGATGCGAAGAATGATAAAG
1 GTGCCAATA-TGCTGATTCAAGGCCAATGATATTGGGCTTAA-GATGAGAAGAATGATAAAG
* ** ** *
879276 GTGCCAATATGCTGATTCACGGCCAACAATATCAGGCTTGAAGATGAGAAGAATGATAAGG
1 GTGCCAATATGCTGATTCAAGGCCAATGATATTGGGCTT-AAGATGAGAAGAATGATAAAG
879337 GTGCCAATATGCTGATTCAAGGCCAATGATATTGGGCTTAAAGATG
1 GTGCCAATATGCTGATTCAAGGCCAATGATATTGGGCTT-AAGATG
879383 GCAAAGGTGC
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
61 85 0.97
62 3 0.03
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.24
Consensus pattern (60 bp):
GTGCCAATATGCTGATTCAAGGCCAATGATATTGGGCTTAAGATGAGAAGAATGATAAAG
Found at i:879499 original size:92 final size:90
Alignment explanation
Indices: 879337--879658 Score: 333
Period size: 92 Copynumber: 3.5 Consensus size: 90
879327 AATGATAAGG
* ** * * *
879337 GTGCCAATATGCTGATTCAAGGCCAATGATATTGGGCTTAAAGATGGCAAAGGTGCTAATATGCT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-GCAAAGGTGCCAATATGCT
*
879402 GATTCAAGGCCAGCGACATTGGCCTT
65 GATTCAAGGCCAGCGATATTGGCCTT
* * *
879428 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTATAAGATGACAAAGGCGCCAATATGC
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA-AAGATG-CAAAGGTGCCAATATGC
*
879493 TGATTCAAGGCCAGCGATATTGGACTT
64 TGATTCAAGGCCAGCGATATTGGCCTT
** * * *
879520 AAAGGTGCCAATGTGCAAATTCAAGGCCAGCGCCATTGGACTCAAAGATG--GAGGTGCCAATAT
1 ----GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGCAAAGGTGCCAATAT
* ** **
879583 ACTGATTCAAGGATAGCGATATTGGACTCAAAG
62 GCTGATTCAAGGCCAGCGATATTGG-C-C--TT
*
879616 GTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
879659 GTACCATAGA
Statistics
Matches: 192, Mismatches: 29, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
91 35 0.18
92 116 0.60
94 1 0.01
95 6 0.03
96 34 0.18
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (90 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGCAAAGGTGCCAATATGCTG
ATTCAAGGCCAGCGATATTGGCCTT
Found at i:879542 original size:43 final size:43
Alignment explanation
Indices: 879477--879660 Score: 206
Period size: 43 Copynumber: 4.1 Consensus size: 43
879467 ATAAGATGAC
*
879477 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* ** ** *
879520 AAAGGTGCCAATGTGCAAATTCAAGGCCAGCGCCATTGGACTCAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT--T
* ** *
879565 AGATGGAGGTGCCAATATACTGATTCAAGGATAGCGATATTGGACTC
1 A-A---AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
879612 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
879655 AAAGGT
1 AAAGGT
879661 ACCATAGAGT
Statistics
Matches: 114, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
43 78 0.68
45 1 0.01
46 2 0.02
47 1 0.01
49 32 0.28
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.23
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:879594 original size:49 final size:48
Alignment explanation
Indices: 879428--879658 Score: 176
Period size: 43 Copynumber: 4.9 Consensus size: 48
879418 CATTGGCCTT
* * * *
879428 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTATAAGATGACAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCA-AAGATG----AG
* * *
879481 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT--TA-A--AG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAGATGAG
* ** *
879524 GTGCCAATGTGCAAATTCAAGGCCAGCGCCATTGGACTCAAAGATGGAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAGAT-GAG
* ** *
879573 GTGCCAATATACTGATTCAAGGATAGCGATATTGGACTC--A-A--AG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAGATGAG
* * *
879616 GTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAG
879659 GTACCATAGA
Statistics
Matches: 143, Mismatches: 26, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
43 70 0.49
45 2 0.01
46 2 0.01
47 1 0.01
49 34 0.24
50 1 0.01
53 33 0.23
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (48 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAGATGAG
Found at i:879676 original size:25 final size:27
Alignment explanation
Indices: 879648--879711 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
879638 CCAGCGATAT
*
879648 TGGACTT-AAAGG-TACCATAGAGTTA
1 TGGACTTAAAAGGATACCACAGAGTTA
* *
879673 TGGACTTAAAAGGATTCCACGGAGTTA
1 TGGACTTAAAAGGATACCACAGAGTTA
879700 TGGACTTTAAAA
1 TGGAC-TTAAAA
879712 AGGAAAAAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.21
26 5 0.15
27 15 0.45
28 6 0.18
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.28
Consensus pattern (27 bp):
TGGACTTAAAAGGATACCACAGAGTTA
Found at i:879752 original size:34 final size:32
Alignment explanation
Indices: 879680--880408 Score: 540
Period size: 32 Copynumber: 23.0 Consensus size: 32
879670 TTATGGACTT
* * *
879680 AAAAGGATTCCACGGAGTTATGGACTTTAAAAAGGA
1 AAAAGG-TGCCACGAAGTTGTGGAC-TT-AAAA-GA
* * *
879716 AAAAGAGTGCCACGAAGTTATGGGCTTAAAAGG
1 AAAAG-GTGCCACGAAGTTGTGGACTTAAAAGA
879749 AAAAGGTGCCACGAAGTTGTGGACTTAAAAAAGA
1 AAAAGGTGCCACGAAGTTGTGGACTT--AAAAGA
* * *
879783 AAAATGTGCCAC-AGAGTTGTGGAC-TAAAGGG
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
** *
879814 AAAAGGTGCCAC-AGAGTTGTGGGTTTTGACAAGA
1 AAAAGGTGCCACGA-AGTTGT-GGACTT-AAAAGA
879848 AAAAGGTGCCAC-AGAGTTGTGGACTTAAAAGA
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
* * * *
879880 AAAGGGGTGCCATGGAGTTGTAGACTTAAAAG-
1 AAA-AGGTGCCACGAAGTTGTGGACTTAAAAGA
* *
879912 ----GGTGCGA-TAGAGTTGTGGACTTAAAA-A
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
*
879939 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGG
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
*
879971 AAAAGGTGCCAC-AGAGTTGTGGGCTT-AAAGA
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
*
880002 AAAAGGTGCCACGGAGTTGTGGACTT--AAG-
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
* *
880031 --AGGGTGCCACGAAGTTGTGGACTTAAAAGG
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
880061 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAA
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAA-G-A
* * *
880095 AAAAAGTACCACGAAGTTGTGGAC-TAAAGAAA
1 AAAAGGTGCCACGAAGTTGTGGACTTAAA-AGA
* *
880127 AAAAGGTGCCAC-AGAGTTGTGGGCTTTGACAAGA
1 AAAAGGTGCCACGA-AGTTGTGGAC-TT-AAAAGA
* * * *
880161 AAGAGGTGCCAC-AGAGTTATCGACTTAAAGGA
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
**
880193 AAGGGAGTGCCAC-AGAGTTGTGGACTT-----A
1 AAAAG-GTGCCACGA-AGTTGTGGACTTAAAAGA
* *
880221 AAAAGGTGCCAC-AGAGTTATAGG--TTCAAAAGG
1 AAAAGGTGCCACGA-AGTTGT-GGACTT-AAAAGA
880253 AAAAGGTGCCAC-AGAGTTGTGGACTTAAAAGA
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
* *
880285 AAAAGATGCCACGGAGTTGTGGACTTAAAAG-
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
880316 ----GGTGCCACGAAGTTGTGGACTTAAAAGA
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
* * *
880344 AAAAGGTGCTACGGAGTTGTGGGCTTTGAAAAGA
1 AAAAGGTGCCACGAAGTTGTGGAC-TT-AAAAGA
* * *
880378 GAAAGGTGACACGGAGTTGTGGACTTAAAAG
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAG
880409 GGTGCCACAG
Statistics
Matches: 572, Mismatches: 72, Indels: 102
0.77 0.10 0.14
Matches are distributed among these distances:
26 2 0.00
27 82 0.14
28 6 0.01
29 3 0.01
30 3 0.01
31 76 0.13
32 182 0.32
33 68 0.12
34 125 0.22
35 4 0.01
36 20 0.03
37 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.31, T:0.20
Consensus pattern (32 bp):
AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
Found at i:879924 original size:27 final size:28
Alignment explanation
Indices: 879879--879937 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
879869 GACTTAAAAG
*
879879 AAAAGGGGTGCCATGGAGTTGTAGACTT
1 AAAAGGGGTGCCATAGAGTTGTAGACTT
* *
879907 AAAA-GGGTGCGATAGAGTTGTGGACTT
1 AAAAGGGGTGCCATAGAGTTGTAGACTT
879934 AAAA
1 AAAA
879938 AAAAAGGTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 24 0.86
28 4 0.14
ACGTcount: A:0.34, C:0.08, G:0.34, T:0.24
Consensus pattern (28 bp):
AAAAGGGGTGCCATAGAGTTGTAGACTT
Found at i:880083 original size:59 final size:59
Alignment explanation
Indices: 879852--880451 Score: 345
Period size: 59 Copynumber: 9.7 Consensus size: 59
879842 ACAAGAAAAA
* * * *
879852 GGTGCCACAGAGTTGTGGACTTAAAA-GAAAAGGGGTGCCATGGAGTTGTAGACTTAAAAG
1 GGTGCCACAGAGTTGTGGACTTAAAAGGAAAA--GGTGCCACGAAGTTGTGGACTTAAGAG
* * * *
879912 GGTGCGATAGAGTTGTGGACTTAAAA-AAAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAA
1 GGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTT--AA-G--AG
* * *
879975 GGTGCCACAGAGTTGTGGGCTT-AAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAGAG
1 GGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTTAAGAG
*
880033 GGTGCCAC-GAAGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTTAAAAG
1 GGTGCCACAG-AGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTTAAGAG
* ** *
880092 GAAAAAAAGTACCAC-GAAGTTGTGGAC-TAAAGAAAAAAAGGTGCCAC-AGAGTTGTGGGCTTT
1 G-------GTGCCACAG-AGTTGTGGACTTAAA-AGGAAAAGGTGCCACGA-AGTTGTGGAC-TT
880154 GACAAGAAAG
55 ---AAG--AG
* * * * *
880164 AGGTGCCACAGAGTTATCGACTT-AAAGGAAAGGGAGTGCCAC-AGAGTTGTGGACTTAAAAA
1 -GGTGCCACAGAGTTGTGGACTTAAAAGGAAA-AG-GTGCCACGA-AGTTGTGGACTTAAGAG
*
880225 GGTGCCACAGAGTTATAGG--TTCAAAAGGAAAAGGTGCCAC-AGAGTTGTGGACTTAAAAGAAA
1 GGTGCCACAGAGTTGT-GGACTT-AAAAGGAAAAGGTGCCACGA-AGTTGTGGACTT--AAG---
*
880287 AA
58 AG
* * *
880289 GATGCCACGGAGTTGTGGACTTAAAA-G----GGTGCCACGAAGTTGTGGACTTAAAAGAAAAA
1 GGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTT--AAG---AG
* * * * * *
880348 GGTGCTACGGAGTTGTGGGCTTTGAAAA-GAGAAAGGTGACACGGAGTTGTGGACTTAAAAG
1 GGTGCCACAGAGTTGTGGAC-TT-AAAAGGA-AAAGGTGCCACGAAGTTGTGGACTTAAGAG
* *
880409 GGTGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGGATGCCAC
1 GGTGCCACAGAGTTGTGGAC-TT-AAAAGGAAAAGG-TGCCAC
880452 TGAGTCACGA
Statistics
Matches: 444, Mismatches: 48, Indels: 94
0.76 0.08 0.16
Matches are distributed among these distances:
57 1 0.00
58 39 0.09
59 104 0.23
60 51 0.11
61 51 0.11
62 9 0.02
63 51 0.11
64 21 0.05
65 11 0.02
66 79 0.18
67 22 0.05
70 2 0.00
72 2 0.00
73 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.32, T:0.20
Consensus pattern (59 bp):
GGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTTAAGAG
Found at i:880259 original size:192 final size:184
Alignment explanation
Indices: 879680--880416 Score: 545
Period size: 190 Copynumber: 3.9 Consensus size: 184
879670 TTATGGACTT
* * * * * * *
879680 AAAAGGATTCCACGGAGTTATGGACTTTAAAAAGGAAAAAGAGTGCCACGAAGTTATGGGCTTAA
1 AAAAGG-TGCCACAGAGTTGTGGAC-TT-AAAA-GAAAAA-AATACCACGAAGTTGTGGAC-TAA
** * * * *
879745 AAGGAAAAGGTGCCACGAAGTTGTGGACTTAAAAAAGAAAAATGTGCCACAGAGTTGTGGAC-TA
60 AAAAAAAAGGTGCCACGAAGTTGTGGACTT--AAAAGGAAAAGGTGCCACAGAGTTATCGACTTA
* ** *
879809 AAGGGAAAAGGTGCCACAGAGTTGTGGGTTTTGACAAGAAAAAGGTGCCAC-AGAGTTGTGGACT
123 AA-GAAAAAGGTGCCACAGAGTTGT--G----GAC-TTAAAAAGGTGCCACGA-AGTTATGGA-T
879873 TAAAA-G
178 TAAAAGG
** * ****** *
879879 AAAAGGGGTGCCATGGAGTTGTAGACTTAAAAGGGTGCGAT---A-G-AGTTGTGGACTTAAAAA
1 AAAA--GGTGCCACAGAGTTGTGGACTTAAAAGAAAAAAATACCACGAAGTTGTGGACTAAAAAA
* * *
879939 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAGGTGCCACAGAGTTGTGGGCTTAAAGAAA
64 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAGGTGCCACAGAGTTATCGACTTAAAGAAA
* * * *
880004 AAGGTGCCACGGAGTTGTGGACTTAAGAGGGTGCCACGAAGTTGTGGACTTAAAAGG
129 AAGGTGCCACAGAGTTGTGGACTTAAAAAGGTGCCACGAAGTTATGGA-TTAAAAGG
880061 AAAAGGTGCCAC-GAAGTTGTGGACTTAAAAGGAAAAAAAGTACCACGAAGTTGTGGACTAAAGA
1 AAAAGGTGCCACAG-AGTTGTGGACTTAAAA-GAAAAAAA-TACCACGAAGTTGTGGACTAAA-A
* *
880125 AAAAAAGGTGCCAC-AGAGTTGTGGGCTTTGACAA-GAAAGAGGTGCCACAGAGTTATCGACTTA
62 AAAAAAGGTGCCACGA-AGTTGTGGAC-TT-AAAAGGAAA-AGGTGCCACAGAGTTATCGACTTA
**
880188 AAGGAAAGGGAGTGCCACAGAGTTGTGGACTTAAAAAGGTGCCAC-AGAGTTATAGG-TTCAAAA
123 AA-GAAAAAG-GTGCCACAGAGTTGTGGACTTAAAAAGGTGCCACGA-AGTTAT-GGATT-AAAA
880251 GG
183 GG
* * * *
880253 AAAAGGTGCCACAGAGTTGTGGACTTAAAAGAAAAAGATGCCACGGAGTTGTGGACT----TAAA
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAGAAAAAAATACCACGAAGTTGTGGACTAAAAAAAA
* * * * * * * *
880314 AGGGTGCCACGAAGTTGTGGACTTAAAAGAAAAAGGTGCTACGGAGTTGTGGGCTTTGAAAAGAG
66 AAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAGGTGCCACAGAGTTATCGAC-TT--AAAGAA
* * *
880379 AAAGGTGACACGGAGTTGTGGACTTAAAAGGGTGCCAC
128 AAAGGTGCCACAGAGTTGTGGACTTAAAAAGGTGCCAC
880417 AGAGTTGTGG
Statistics
Matches: 445, Mismatches: 64, Indels: 73
0.76 0.11 0.13
Matches are distributed among these distances:
179 1 0.00
180 22 0.05
181 29 0.07
182 10 0.02
183 19 0.04
184 38 0.09
185 26 0.06
186 6 0.01
187 14 0.03
188 71 0.16
189 10 0.02
190 73 0.16
191 23 0.05
192 71 0.16
193 4 0.01
196 1 0.00
197 1 0.00
198 4 0.01
199 6 0.01
200 14 0.03
201 2 0.00
ACGTcount: A:0.37, C:0.12, G:0.31, T:0.20
Consensus pattern (184 bp):
AAAAGGTGCCACAGAGTTGTGGACTTAAAAGAAAAAAATACCACGAAGTTGTGGACTAAAAAAAA
AAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAGGTGCCACAGAGTTATCGACTTAAAGAAAAA
GGTGCCACAGAGTTGTGGACTTAAAAAGGTGCCACGAAGTTATGGATTAAAAGG
Found at i:887298 original size:61 final size:60
Alignment explanation
Indices: 887233--887400 Score: 194
Period size: 61 Copynumber: 2.8 Consensus size: 60
887223 GATGAGAAGA
* * ** *
887233 GTGCCAA-AGTGCTGATTCAAGGTCAGTGACGTTGGGCTTAAGGATGCGAAGAATGATAAAG
1 GTGCCAATA-TGCTGATTCAAGGCCAATGATATTGGGCTTAA-GATGAGAAGAATGATAAAG
* ** ** *
887294 GTGCCAATATGCTGATTCACGGCCAACAATATCAGGCTTGAAGATGAGAAGAATGATAAGG
1 GTGCCAATATGCTGATTCAAGGCCAATGATATTGGGCTT-AAGATGAGAAGAATGATAAAG
887355 GTGCCAATATGCTGATTCAAGGCCAATGATATTGGGCTTAAAGATG
1 GTGCCAATATGCTGATTCAAGGCCAATGATATTGGGCTT-AAGATG
887401 GCAAAGGTGC
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
61 85 0.97
62 3 0.03
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.24
Consensus pattern (60 bp):
GTGCCAATATGCTGATTCAAGGCCAATGATATTGGGCTTAAGATGAGAAGAATGATAAAG
Found at i:887517 original size:92 final size:90
Alignment explanation
Indices: 887355--887676 Score: 333
Period size: 92 Copynumber: 3.5 Consensus size: 90
887345 AATGATAAGG
* ** * * *
887355 GTGCCAATATGCTGATTCAAGGCCAATGATATTGGGCTTAAAGATGGCAAAGGTGCTAATATGCT
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-GCAAAGGTGCCAATATGCT
*
887420 GATTCAAGGCCAGCGACATTGGCCTT
65 GATTCAAGGCCAGCGATATTGGCCTT
* * *
887446 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTATAAGATGACAAAGGCGCCAATATGC
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA-AAGATG-CAAAGGTGCCAATATGC
*
887511 TGATTCAAGGCCAGCGATATTGGACTT
64 TGATTCAAGGCCAGCGATATTGGCCTT
** * * *
887538 AAAGGTGCCAATGTGCAAATTCAAGGCCAGCGCCATTGGACTCAAAGATG--GAGGTGCCAATAT
1 ----GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGCAAAGGTGCCAATAT
* ** **
887601 ACTGATTCAAGGATAGCGATATTGGACTCAAAG
62 GCTGATTCAAGGCCAGCGATATTGG-C-C--TT
*
887634 GTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
887677 GTACCATAGA
Statistics
Matches: 192, Mismatches: 29, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
91 35 0.18
92 116 0.60
94 1 0.01
95 6 0.03
96 34 0.18
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (90 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGCAAAGGTGCCAATATGCTG
ATTCAAGGCCAGCGATATTGGCCTT
Found at i:887560 original size:43 final size:43
Alignment explanation
Indices: 887495--887678 Score: 206
Period size: 43 Copynumber: 4.1 Consensus size: 43
887485 ATAAGATGAC
*
887495 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* ** ** *
887538 AAAGGTGCCAATGTGCAAATTCAAGGCCAGCGCCATTGGACTCAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT--T
* ** *
887583 AGATGGAGGTGCCAATATACTGATTCAAGGATAGCGATATTGGACTC
1 A-A---AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
887630 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
887673 AAAGGT
1 AAAGGT
887679 ACCATAGAGT
Statistics
Matches: 114, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
43 78 0.68
45 1 0.01
46 2 0.02
47 1 0.01
49 32 0.28
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.23
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:887612 original size:49 final size:48
Alignment explanation
Indices: 887446--887676 Score: 176
Period size: 43 Copynumber: 4.9 Consensus size: 48
887436 CATTGGCCTT
* * * *
887446 GTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTATAAGATGACAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCA-AAGATG----AG
* * *
887499 GCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACT--TA-A--AG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAGATGAG
* ** *
887542 GTGCCAATGTGCAAATTCAAGGCCAGCGCCATTGGACTCAAAGATGGAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAGAT-GAG
* ** *
887591 GTGCCAATATACTGATTCAAGGATAGCGATATTGGACTC--A-A--AG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAGATGAG
* * *
887634 GTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAG
887677 GTACCATAGA
Statistics
Matches: 143, Mismatches: 26, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
43 70 0.49
45 2 0.01
46 2 0.01
47 1 0.01
49 34 0.24
50 1 0.01
53 33 0.23
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (48 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTCAAAGATGAG
Found at i:887694 original size:25 final size:27
Alignment explanation
Indices: 887666--887729 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
887656 CCAGCGATAT
*
887666 TGGACTT-AAAGG-TACCATAGAGTTA
1 TGGACTTAAAAGGATACCACAGAGTTA
* *
887691 TGGACTTAAAAGGATTCCACGGAGTTA
1 TGGACTTAAAAGGATACCACAGAGTTA
887718 TGGACTTTAAAA
1 TGGAC-TTAAAA
887730 AGGAAAAAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.21
26 5 0.15
27 15 0.45
28 6 0.18
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.28
Consensus pattern (27 bp):
TGGACTTAAAAGGATACCACAGAGTTA
Found at i:887770 original size:34 final size:32
Alignment explanation
Indices: 887698--888426 Score: 531
Period size: 32 Copynumber: 23.0 Consensus size: 32
887688 TTATGGACTT
* * *
887698 AAAAGGATTCCACGGAGTTATGGACTTTAAAAAGGA
1 AAAAGG-TGCCACGAAGTTGTGGAC-TT-AAAA-GA
* * *
887734 AAAAGAGTGCCACGAAGTTATGGGCTTAAAAGG
1 AAAAG-GTGCCACGAAGTTGTGGACTTAAAAGA
887767 AAAAGGTGCCACGAAGTTGTGGACTTAAAAAAGA
1 AAAAGGTGCCACGAAGTTGTGGACTT--AAAAGA
* * *
887801 AAAATGTGCCAC-AGAGTTGTGGAC-TAAAGGG
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
** *
887832 AAAAGGTGCCAC-AGAGTTGTGGGTTTTGACAAGA
1 AAAAGGTGCCACGA-AGTTGT-GGACTT-AAAAGA
887866 AAAAGGTGCCAC-AGAGTTGTGGACTTAAAAGA
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
* * * *
887898 AAAGGGGTGCCATGGAGTTGTAGACTTAAAAG-
1 AAA-AGGTGCCACGAAGTTGTGGACTTAAAAGA
* *
887930 ----GGTGCGA-TAGAGTTGTGGACTTAAAA-A
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
*
887957 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGG
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
* *
887989 AAAATGTGCCAC-AGAGTTGTGGGCTT-AAAGA
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
*
888020 AAAAGGTGCCACGGAGTTGTGGACTT--AAG-
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
* *
888049 --AGGGTGCCACGAAGTTGTGGACTTAAAAGG
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
888079 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAA
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAA-G-A
* * *
888113 AAAAAGTACCACGAAGTTGTGGAC-TAAAGAAA
1 AAAAGGTGCCACGAAGTTGTGGACTTAAA-AGA
* *
888145 AAAAGGTGCCAC-AGAGTTGTGGGCTTTGACAAGA
1 AAAAGGTGCCACGA-AGTTGTGGAC-TT-AAAAGA
* * * *
888179 AAGAGGTGCCAC-AGAGTTATCGACTTAAAGGA
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
**
888211 AAGGGAGTGCCAC-AGAGTTGTGGACTT-----A
1 AAAAG-GTGCCACGA-AGTTGTGGACTTAAAAGA
* *
888239 AAAAGGTGCCAC-AGAGTTATAGG--TTCAAAAGG
1 AAAAGGTGCCACGA-AGTTGT-GGACTT-AAAAGA
888271 AAAAGGTGCCAC-AGAGTTGTGGACTTAAAAGA
1 AAAAGGTGCCACGA-AGTTGTGGACTTAAAAGA
* *
888303 AAAAGATGCCACGGAGTTGTGGACTTAAAAG-
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
888334 ----GGTGCCACGAAGTTGTGGACTTAAAAGA
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
* * *
888362 AAAAGGTGCTACGGAGTTGTGGGCTTTGAAAAGA
1 AAAAGGTGCCACGAAGTTGTGGAC-TT-AAAAGA
* * *
888396 GAAAGGTGACACGGAGTTGTGGACTTAAAAG
1 AAAAGGTGCCACGAAGTTGTGGACTTAAAAG
888427 GGTGCCACAG
Statistics
Matches: 570, Mismatches: 74, Indels: 102
0.76 0.10 0.14
Matches are distributed among these distances:
26 2 0.00
27 82 0.14
28 6 0.01
29 3 0.01
30 3 0.01
31 75 0.13
32 181 0.32
33 68 0.12
34 125 0.22
35 4 0.01
36 20 0.04
37 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.31, T:0.20
Consensus pattern (32 bp):
AAAAGGTGCCACGAAGTTGTGGACTTAAAAGA
Found at i:887942 original size:27 final size:28
Alignment explanation
Indices: 887897--887955 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
887887 GACTTAAAAG
*
887897 AAAAGGGGTGCCATGGAGTTGTAGACTT
1 AAAAGGGGTGCCATAGAGTTGTAGACTT
* *
887925 AAAA-GGGTGCGATAGAGTTGTGGACTT
1 AAAAGGGGTGCCATAGAGTTGTAGACTT
887952 AAAA
1 AAAA
887956 AAAAAGGTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 24 0.86
28 4 0.14
ACGTcount: A:0.34, C:0.08, G:0.34, T:0.24
Consensus pattern (28 bp):
AAAAGGGGTGCCATAGAGTTGTAGACTT
Found at i:888100 original size:59 final size:59
Alignment explanation
Indices: 887865--888469 Score: 400
Period size: 59 Copynumber: 9.8 Consensus size: 59
887855 TTTTGACAAG
* * * *
887865 AAAAAGGTGCCACAGAGTTGTGGACTTAAAA-GAAAAGGGGTGCCATGGAGTTGTAGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAA--GGTGCCACGAAGTTGTGGACTT
* * *
887925 AAAAGGGTGCGATAGAGTTGTGGACTTAAAA-AAAAAGGTGCCACGAAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTT
* * *
887983 AAAAGGAAAATGTGCCACAGAGTTGTGGGCTT-AAAGAAAAAGGTGCCACGGAGTTGTGGACTT
1 AAAAGG-----GTGCCACAGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTT
*
888046 AAGAGGGTGCCAC-GAAGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTT
1 AAAAGGGTGCCACAG-AGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTT
* **
888105 AAAAGGAAAAAAAGTACCAC-GAAGTTGTGGAC-TAAAGAAAAAAAGGTGCCAC-AGAGTTGTGG
1 AAAAGG-------GTGCCACAG-AGTTGTGGACTTAAA-AGGAAAAGGTGCCACGA-AGTTGTGG
*
888167 GCTTT
56 AC-TT
* * *
888172 GACAAGAAAGAGGTGCCACAGAGTTATCGACTT-AAAGGAAAGGGAGTGCCAC-AGAGTTGTGGA
1 ----A-AAAG-GGTGCCACAGAGTTGTGGACTTAAAAGGAAA-AG-GTGCCACGA-AGTTGTGGA
888235 CTT
57 CTT
* *
888238 AAAAAGGTGCCACAGAGTTATAGG--TTCAAAAGGAAAAGGTGCCAC-AGAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTGT-GGACTT-AAAAGGAAAAGGTGCCACGA-AGTTGTGGACTT
* *
888297 AAAAGAAAAAGATGCCACGGAGTTGTGGACTTAAAA-G----GGTGCCACGAAGTTGTGGACTT
1 AAAAG-----GGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTT
* * * * *
888356 AAAAGAAAAAGGTGCTACGGAGTTGTGGGCTTTGAAAA-GAGAAAGGTGACACGGAGTTGTGGAC
1 AAAAG-----GGTGCCACAGAGTTGTGGAC-TT-AAAAGGA-AAAGGTGCCACGAAGTTGTGGAC
888420 TT
58 TT
* *
888422 AAAAGGGTGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGGATGCCAC
1 AAAAGGGTGCCACAGAGTTGTGGAC-TT-AAAAGGAAAAGG-TGCCAC
888470 TGAGTCACGA
Statistics
Matches: 454, Mismatches: 43, Indels: 94
0.77 0.07 0.16
Matches are distributed among these distances:
57 1 0.00
58 43 0.09
59 108 0.24
60 52 0.11
61 48 0.11
62 10 0.02
63 52 0.11
64 17 0.04
65 11 0.02
66 84 0.19
67 22 0.05
71 1 0.00
72 4 0.01
73 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.31, T:0.20
Consensus pattern (59 bp):
AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGAAGTTGTGGACTT
Found at i:888277 original size:192 final size:184
Alignment explanation
Indices: 887698--888434 Score: 536
Period size: 188 Copynumber: 3.9 Consensus size: 184
887688 TTATGGACTT
* * * * * * *
887698 AAAAGGATTCCACGGAGTTATGGACTTTAAAAAGGAAAAAGAGTGCCACGAAGTTATGGGCTTAA
1 AAAAGG-TGCCACAGAGTTGTGGAC-TT-AAAA-GAAAAA-AATACCACGAAGTTGTGGAC-TAA
** * * * *
887763 AAGGAAAAGGTGCCACGAAGTTGTGGACTTAAAAAAGAAAAATGTGCCACAGAGTTGTGGAC-TA
60 AAAAAAAAGGTGCCACGAAGTTGTGGACTT--AAAAGGAAAAGGTGCCACAGAGTTATCGACTTA
* ** *
887827 AAGGGAAAAGGTGCCACAGAGTTGTGGGTTTTGACAAGAAAAAGGTGCCAC-AGAGTTGTGGACT
123 AA-GAAAAAGGTGCCACAGAGTTGT--G----GAC-TTAAAAAGGTGCCACGA-AGTTATGGA-T
887891 TAAAA-G
178 TAAAAGG
** * ****** *
887897 AAAAGGGGTGCCATGGAGTTGTAGACTTAAAAGGGTGCGAT---A-G-AGTTGTGGACTTAAAAA
1 AAAA--GGTGCCACAGAGTTGTGGACTTAAAAGAAAAAAATACCACGAAGTTGTGGACTAAAAAA
* * * *
887957 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAATGTGCCACAGAGTTGTGGGCTTAAAGAAA
64 AAAAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAGGTGCCACAGAGTTATCGACTTAAAGAAA
* * * *
888022 AAGGTGCCACGGAGTTGTGGACTTAAGAGGGTGCCACGAAGTTGTGGACTTAAAAGG
129 AAGGTGCCACAGAGTTGTGGACTTAAAAAGGTGCCACGAAGTTATGGA-TTAAAAGG
888079 AAAAGGTGCCAC-GAAGTTGTGGACTTAAAAGGAAAAAAAGTACCACGAAGTTGTGGACTAAAGA
1 AAAAGGTGCCACAG-AGTTGTGGACTTAAAA-GAAAAAAA-TACCACGAAGTTGTGGACTAAA-A
* *
888143 AAAAAAGGTGCCAC-AGAGTTGTGGGCTTTGACAA-GAAAGAGGTGCCACAGAGTTATCGACTTA
62 AAAAAAGGTGCCACGA-AGTTGTGGAC-TT-AAAAGGAAA-AGGTGCCACAGAGTTATCGACTTA
**
888206 AAGGAAAGGGAGTGCCACAGAGTTGTGGACTTAAAAAGGTGCCAC-AGAGTTATAGG-TTCAAAA
123 AA-GAAAAAG-GTGCCACAGAGTTGTGGACTTAAAAAGGTGCCACGA-AGTTAT-GGATT-AAAA
888269 GG
183 GG
* * * *
888271 AAAAGGTGCCACAGAGTTGTGGACTTAAAAGAAAAAGATGCCACGGAGTTGTGGACT----TAAA
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAGAAAAAAATACCACGAAGTTGTGGACTAAAAAAAA
* * * * * * * *
888332 AGGGTGCCACGAAGTTGTGGACTTAAAAGAAAAAGGTGCTACGGAGTTGTGGGCTTTGAAAAGAG
66 AAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAGGTGCCACAGAGTTATCGAC-TT--AAAGAA
* * *
888397 AAAGGTGACACGGAGTTGTGGACTTAAAAGGGTGCCAC
128 AAAGGTGCCACAGAGTTGTGGACTTAAAAAGGTGCCAC
888435 AGAGTTGTGG
Statistics
Matches: 445, Mismatches: 64, Indels: 73
0.76 0.11 0.13
Matches are distributed among these distances:
179 1 0.00
180 22 0.05
181 29 0.07
182 10 0.02
183 19 0.04
184 38 0.09
185 26 0.06
186 6 0.01
187 14 0.03
188 72 0.16
189 10 0.02
190 72 0.16
191 23 0.05
192 71 0.16
193 4 0.01
196 1 0.00
197 1 0.00
198 4 0.01
199 6 0.01
200 14 0.03
201 2 0.00
ACGTcount: A:0.37, C:0.12, G:0.31, T:0.20
Consensus pattern (184 bp):
AAAAGGTGCCACAGAGTTGTGGACTTAAAAGAAAAAAATACCACGAAGTTGTGGACTAAAAAAAA
AAGGTGCCACGAAGTTGTGGACTTAAAAGGAAAAGGTGCCACAGAGTTATCGACTTAAAGAAAAA
GGTGCCACAGAGTTGTGGACTTAAAAAGGTGCCACGAAGTTATGGATTAAAAGG
Found at i:891550 original size:19 final size:19
Alignment explanation
Indices: 891506--891589 Score: 90
Period size: 19 Copynumber: 4.6 Consensus size: 19
891496 ATTTCTAGAA
* *
891506 TGTATCGATACAAACAGTAAT
1 TGTATCGATACATA-AGT-GT
891527 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
891546 TGTATCGATAC--AA----
1 TGTATCGATACATAAGTGT
891559 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
891578 TGTATCGATACA
1 TGTATCGATACA
891590 ATGTATCGCT
Statistics
Matches: 55, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
13 11 0.20
15 2 0.04
17 2 0.04
19 24 0.44
20 3 0.05
21 13 0.24
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:891564 original size:13 final size:13
Alignment explanation
Indices: 891546--891603 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
891536 ACATAAGTGT
891546 TGTATCGATACAA
1 TGTATCGATACAA
891559 TGTATCGATACATAA
1 TGTATCGATAC--AA
891574 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
*
891591 TGTATCGCTACAA
1 TGTATCGATACAA
891604 AGCTACTGCC
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:891568 original size:32 final size:32
Alignment explanation
Indices: 891527--891602 Score: 143
Period size: 32 Copynumber: 2.4 Consensus size: 32
891517 AAACAGTAAT
891527 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
891559 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
891591 TGTATCGCTACA
1 TGTATCGATACA
891603 AAGCTACTGC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:895816 original size:19 final size:19
Alignment explanation
Indices: 895792--895839 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
895782 AACAGTAAAT
*
895792 TATCGATACATAAGTTTTG
1 TATCGATACATAAGTGTTG
895811 TATCGATACATAAGTGTTG
1 TATCGATACATAAGTGTTG
895830 TATCGATACA
1 TATCGATACA
895840 ATGTATCGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (19 bp):
TATCGATACATAAGTGTTG
Found at i:898400 original size:13 final size:13
Alignment explanation
Indices: 898382--898407 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
898372 TACAGCAAGT
898382 ATGTATCGATACA
1 ATGTATCGATACA
898395 ATGTATCGATACA
1 ATGTATCGATACA
898408 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:903675 original size:18 final size:18
Alignment explanation
Indices: 903635--903686 Score: 56
Period size: 17 Copynumber: 3.0 Consensus size: 18
903625 ATGAAAAAGT
* *
903635 CAAAAGTAAACACACAAA
1 CAAAAGTAAACAAAAAAA
903653 CAAAAGTAAA-AAAAAAA
1 CAAAAGTAAACAAAAAAA
903670 CAAAA--AAACACAAAAAA
1 CAAAAGTAAACA-AAAAAA
903687 AGTGTAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 3 0.10
16 1 0.03
17 16 0.53
18 10 0.33
ACGTcount: A:0.77, C:0.15, G:0.04, T:0.04
Consensus pattern (18 bp):
CAAAAGTAAACAAAAAAA
Found at i:905007 original size:31 final size:31
Alignment explanation
Indices: 904962--905188 Score: 201
Period size: 31 Copynumber: 7.2 Consensus size: 31
904952 TCTTCAAATC
904962 TCTTTTC-TCAAAGTCCACGACTCAGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
*
904992 TCTTTTCTTCAAAGTCCATGACTCAGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * *
905023 TCTTTTTTTCCAAGTCCACGACTCAGTGGCG
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* *
905054 TCTTTT-TTCCCCAACGTCGACGACAT-AGTGGCA
1 TCTTTTCTT---CAAAGTCCACGAC-TCAGTGGCA
*
905087 TCTTTTTTCTTCAAATTCCACGACTCAGTGGCA
1 TC--TTTTCTTCAAAGTCCACGACTCAGTGGCA
*** * **
905120 TCTTTTCCAAAAAGTCAACGACTTTGTGGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* **
905151 CCTTTTCTTTTTAAGTCCACGACTCCA-TGGCA
1 TCTTTTC-TTCAAAGTCCACGACT-CAGTGGCA
*
905183 CCTTTT
1 TCTTTT
905189 TCCCTTTTAA
Statistics
Matches: 159, Mismatches: 27, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
30 9 0.06
31 83 0.52
32 23 0.14
33 37 0.23
34 1 0.01
35 4 0.03
36 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.35
Consensus pattern (31 bp):
TCTTTTCTTCAAAGTCCACGACTCAGTGGCA
Found at i:905093 original size:62 final size:61
Alignment explanation
Indices: 904962--905188 Score: 181
Period size: 64 Copynumber: 3.6 Consensus size: 61
904952 TCTTCAAATC
* * *
904962 TCTTTTCTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCATGACTCAGTGGCA
1 TCTTTTTTCCAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * *
905023 TCTTTTTTTCCAAGTCCACGACTCAGTGGCGTCTTTT-TTCCCCAACGTCGACGACAT-AGTGGC
1 TC-TTTTTTCCAAGTCCACGACTCAGTGGCATCTTTTCTT---CAAAGTCCACGAC-TCAGTGGC
905086 A
61 A
* *** * **
905087 TCTTTTTTCTTCAAATTCCACGACTCAGTGGCATCTTTTCCAAAAAGTCAACGACTTTGTGGCA
1 TCTTTTTTC--C-AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* ** *
905151 CCTTTTCTTTTTAAGTCCACGACTCCA-TGGCACCTTTT
1 TC-TTT-TTTCCAAGTCCACGACT-CAGTGGCATCTTTT
905189 TCCCTTTTAA
Statistics
Matches: 134, Mismatches: 19, Indels: 24
0.76 0.11 0.14
Matches are distributed among these distances:
61 4 0.03
62 31 0.23
63 29 0.22
64 38 0.28
65 5 0.04
66 27 0.20
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.35
Consensus pattern (61 bp):
TCTTTTTTCCAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
Found at i:905267 original size:70 final size:68
Alignment explanation
Indices: 905153--905322 Score: 216
Period size: 69 Copynumber: 2.5 Consensus size: 68
905143 TTGTGGCACC
* * * * *
905153 TTTTCTTTTTAAGTCCACGACTCCATGGCACCTTTTTCCCTTTTAAGCCCACACCTCTATGGCAT
1 TTTTCCTTTTAAGCCCAC-ACTCCGTGGCACCCTTTTCCCTTTTAAGCCCACACCTCCATGGCAT
905218 CCCT
65 CCCT
*
905222 TTTTCCTTTTAAGCCCACACCTCCGTGGCATCCCTTTTCCCTTTTAAGCCCACACCTCCGTGGCA
1 TTTTCCTTTTAAGCCCACA-CTCCGTGGCA-CCCTTTTCCCTTTTAAGCCCACACCTCCATGGCA
905287 TCCCT
64 TCCCT
* * *
905292 TTTTCC-TGTAAGGCCACAACTTCGTGGCACC
1 TTTTCCTTTTAAGCCCAC-ACTCCGTGGCACC
905323 TCATCTTTAA
Statistics
Matches: 89, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
68 3 0.03
69 43 0.48
70 43 0.48
ACGTcount: A:0.16, C:0.37, G:0.12, T:0.34
Consensus pattern (68 bp):
TTTTCCTTTTAAGCCCACACTCCGTGGCACCCTTTTCCCTTTTAAGCCCACACCTCCATGGCATC
CCT
Found at i:905318 original size:34 final size:35
Alignment explanation
Indices: 905153--905320 Score: 200
Period size: 35 Copynumber: 4.9 Consensus size: 35
905143 TTGTGGCACC
* * *
905153 TTTTCTTTTTAAGTCCACGA-CTCCATGGCA--CCT
1 TTTTCCTTTTAAGCCCAC-ACCTCCGTGGCATCCCT
**
905186 TTTTCCCTTTTAAGCCCACACCTCTATGGCATCCCT
1 TTTT-CCTTTTAAGCCCACACCTCCGTGGCATCCCT
905222 TTTTCCTTTTAAGCCCACACCTCCGTGGCATCCCT
1 TTTTCCTTTTAAGCCCACACCTCCGTGGCATCCCT
*
905257 TTTCCCTTTTAAGCCCACACCTCCGTGGCATCCCT
1 TTTTCCTTTTAAGCCCACACCTCCGTGGCATCCCT
* * * *
905292 TTTTCC-TGTAAGGCCACAACTTCGTGGCA
1 TTTTCCTTTTAAGCCCACACCTCCGTGGCA
905321 CCTCATCTTT
Statistics
Matches: 120, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
33 5 0.04
34 40 0.33
35 68 0.57
36 7 0.06
ACGTcount: A:0.17, C:0.36, G:0.12, T:0.35
Consensus pattern (35 bp):
TTTTCCTTTTAAGCCCACACCTCCGTGGCATCCCT
Done.