Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold513
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 613464
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
File 4 of 5
Found at i:411678 original size:31 final size:32
Alignment explanation
Indices: 411600--411721 Score: 135
Period size: 30 Copynumber: 3.9 Consensus size: 32
411590 CTTTTAAAAG
411600 GAAAAAGATGCCA-TGGAGTCATGGACTTTGAA
1 GAAAAAGATGCCACT-GAGTCATGGACTTTGAA
*
411632 GAAAAAGGATGCCACTGAGTCATGGGCTTTGAA
1 GAAAAA-GATGCCACTGAGTCATGGACTTTGAA
* * *
411665 G-AAAAGATGCCACTAAGTCGTGGATTTTG--
1 GAAAAAGATGCCACTGAGTCATGGACTTTGAA
* * *
411694 GAAAAAGATGACACTAAGTCGTGGACTT
1 GAAAAAGATGCCACTGAGTCATGGACTT
411722 ATAAAAGAGA
Statistics
Matches: 80, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
29 1 0.01
30 24 0.30
31 20 0.25
32 10 0.12
33 24 0.30
34 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (32 bp):
GAAAAAGATGCCACTGAGTCATGGACTTTGAA
Found at i:411884 original size:118 final size:118
Alignment explanation
Indices: 411676--411924 Score: 453
Period size: 118 Copynumber: 2.1 Consensus size: 118
411666 AAAAGATGCC
411676 ACTAAGTCGTGGATTTTGGAAAAAGATGACACTAAGTCGTGGACTTATAAAAGAGAGATTTGATG
1 ACTAAGTCGTGGATTTTGGAAAAAGATGACACTAAGTCGTGGACTTATAAAAGAGAGATTTGATG
*
411741 AATTGAGATATGCTAAACTAAGGATTAATGGGAGAAAGATTAGTGTTATGACG
66 AATTGAGATATGCTAAACTAAGGATTAATGGGACAAAGATTAGTGTTATGACG
* * *
411794 ACTAAGTCATGGATTTTGGAAAAGGATGCCACTAAGTCGTGGACTTATAAAAGAGAGATTTGATG
1 ACTAAGTCGTGGATTTTGGAAAAAGATGACACTAAGTCGTGGACTTATAAAAGAGAGATTTGATG
*
411859 AATTGAGATATGCTAAACTAAGGATTAATGGGACAAAGATTAGTGTTATGATG
66 AATTGAGATATGCTAAACTAAGGATTAATGGGACAAAGATTAGTGTTATGACG
411912 ACTAAGTCGTGGA
1 ACTAAGTCGTGGA
411925 CTTATAAAAG
Statistics
Matches: 125, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
118 125 1.00
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.28
Consensus pattern (118 bp):
ACTAAGTCGTGGATTTTGGAAAAAGATGACACTAAGTCGTGGACTTATAAAAGAGAGATTTGATG
AATTGAGATATGCTAAACTAAGGATTAATGGGACAAAGATTAGTGTTATGACG
Found at i:411978 original size:88 final size:88
Alignment explanation
Indices: 411824--412089 Score: 444
Period size: 88 Copynumber: 3.0 Consensus size: 88
411814 AAAGGATGCC
* * *
411824 ACTAAGTCGTGGACTTATAAAAGAGAGATTTGATGAATTGAGATATGCTAAACTAAGGATTAATG
1 ACTAAGTCGTGGACTTATAAAAGAGAGATTTGAAGAATTGAGATATGCTCAACTAAGGATTGATG
411889 GGACAAAGATTAGTGTTATGATG
66 GGACAAAGATTAGTGTTATGATG
*
411912 ACTAAGTCGTGGACTTATAAAAGATAGATTTGAAGAATTGAGATATGCTCAACTAAGGATTGATG
1 ACTAAGTCGTGGACTTATAAAAGAGAGATTTGAAGAATTGAGATATGCTCAACTAAGGATTGATG
*
411977 GGAGAAAGATTAGTGTTATGATG
66 GGACAAAGATTAGTGTTATGATG
* *
412000 ACTAAGTCGTGGACTTAGAAAAGAGAGATTTGAAGAATTGAGATATGCTCAACTAAGAATTGATG
1 ACTAAGTCGTGGACTTATAAAAGAGAGATTTGAAGAATTGAGATATGCTCAACTAAGGATTGATG
*
412065 GGAGC-AAGATTGGTGTTATGATG
66 GGA-CAAAGATTAGTGTTATGATG
412088 AC
1 AC
412090 ATGTGGTGAT
Statistics
Matches: 167, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
88 167 1.00
ACGTcount: A:0.38, C:0.08, G:0.26, T:0.29
Consensus pattern (88 bp):
ACTAAGTCGTGGACTTATAAAAGAGAGATTTGAAGAATTGAGATATGCTCAACTAAGGATTGATG
GGACAAAGATTAGTGTTATGATG
Found at i:413347 original size:21 final size:22
Alignment explanation
Indices: 413304--413347 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
413294 TTTTTTTTTG
**
413304 TTTTTTTGTGTGTGTGTTGTTT
1 TTTTTTTGTGTGTGTGTACTTT
*
413326 TTTTTTTG-GTGTTTGTACTTT
1 TTTTTTTGTGTGTGTGTACTTT
413347 T
1 T
413348 GAAGGAACTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.02, C:0.02, G:0.23, T:0.73
Consensus pattern (22 bp):
TTTTTTTGTGTGTGTGTACTTT
Found at i:420433 original size:32 final size:32
Alignment explanation
Indices: 420383--420458 Score: 98
Period size: 32 Copynumber: 2.4 Consensus size: 32
420373 GCAGTAGCTT
* **
420383 TGTAGCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACAACGTATCGATACAACACTTA
* * *
420415 TGTATTGATACAACGTATCGATACAATACTTC
1 TGTATCGATACAACGTATCGATACAACACTTA
420447 TGTATCGATACA
1 TGTATCGATACA
420459 TTTACTGTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.33
Consensus pattern (32 bp):
TGTATCGATACAACGTATCGATACAACACTTA
Found at i:427035 original size:9 final size:9
Alignment explanation
Indices: 427021--427051 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
427011 AAAGGACTTC
427021 AAATCATCA
1 AAATCATCA
427030 AAATCATCA
1 AAATCATCA
427039 AAATCATCA
1 AAATCATCA
427048 AAAT
1 AAAT
427052 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.58, C:0.19, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATCATCA
Found at i:428943 original size:166 final size:165
Alignment explanation
Indices: 428710--429305 Score: 653
Period size: 166 Copynumber: 3.6 Consensus size: 165
428700 ATTCCTCCTA
* * * * * *
428710 TTTTCAAATTACGGAATTTTCTTCTCCATAAATTTTTTCG-GGAGGATTTTTCTTAATTTT-TAT
1 TTTTCAAAATATGGTATTTTCTACTCCATAAATTTTTTCGAGG-GGATTTTTCTTAGTTTTCAAT
* * * *
428773 TTTTAAAATTCCTTAAACATCATTATTTATTTTATATTAATTTAGTTTTCAAAAATTCATTCATT
65 TTTTAAAATTCATCAAACATCATCATTTATTTCATATTAATTTAGTTTTCAAAAATTCATTCATT
*
428838 TTTATGAGTTTTTGATTTTTTTCCTTGAAATTTTTCTT
130 TTTATGAGTTTTT-ATTTTTTTCCTTGAAA-TTCTCTT
* * *
428876 TTTTCAAAATGTAGTATTTTCTACTCCATAAATTTTTTCAAGGGGATTTTTCTTAGTTTTC-ATT
1 TTTTCAAAATATGGTATTTTCTACTCCATAAATTTTTTCGAGGGGATTTTTCTTAGTTTTCAATT
* * * * *
428940 TTTAAAATTCATCAAAAATTATCATTTATTTCATATTAATTCAGTTTTAAAAAATTCAATCATTT
66 TTTAAAATTCATCAAACATCATCATTTATTTCATATTAATTTAGTTTTCAAAAATTCATTCATTT
* *
429005 TCT-TGAGTTTTTTATTTTTTTGCTTGAAACTTCCCTT
131 T-TATGAG-TTTTTATTTTTTTCCTTGAAA-TTCTCTT
* * * * * **
429042 TTTTCGAAATATGGTGTTTTTTACACCGTAAATTTTTT-GAGCAGATTTTTC-TAGTTTTCAATT
1 TTTTCAAAATATGGTATTTTCTACTCCATAAATTTTTTCGAGGGGATTTTTCTTAGTTTTCAATT
* *
429105 TTTAAAATTCATCAAACATCATTATTTATTTCATATT-ATTTCAGTTGTCAAAAATTCATTC---
66 TTTAAAATTCATCAAACATCATCATTTATTTCATATTAATTT-AGTTTTCAAAAATTCATTCATT
* *
429166 ---ATGAGTTTTTAATTTTTTCCTTGAAACTCTCTT
130 TTTATGAGTTTTTATTTTTTTCCTTGAAATTCTCTT
* * * * *
429199 TTTTCCTAAATACGGTATTTTCTACTCCGTAAATTTTTTTGAGGGGATTTTTCTTGGTTTTCAAT
1 TTTT-CAAAATATGGTATTTTCTACTCCATAAATTTTTTCGAGGGGATTTTTCTTAGTTTTCAAT
* * *
429264 TTTTAGAATTCATAAAACATCATCATTTGA-TTCATAGTAATT
65 TTTTAAAATTCATCAAACATCATCATTT-ATTTCATATTAATT
429306 CAATTTTCCA
Statistics
Matches: 364, Mismatches: 54, Indels: 29
0.81 0.12 0.06
Matches are distributed among these distances:
157 9 0.02
158 48 0.13
159 15 0.04
160 42 0.12
161 4 0.01
164 11 0.03
165 63 0.17
166 164 0.45
167 8 0.02
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.51
Consensus pattern (165 bp):
TTTTCAAAATATGGTATTTTCTACTCCATAAATTTTTTCGAGGGGATTTTTCTTAGTTTTCAATT
TTTAAAATTCATCAAACATCATCATTTATTTCATATTAATTTAGTTTTCAAAAATTCATTCATTT
TTATGAGTTTTTATTTTTTTCCTTGAAATTCTCTT
Found at i:429345 original size:10 final size:10
Alignment explanation
Indices: 429332--429356 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
429322 TCTTTGATTT
429332 TTCATAGTAA
1 TTCATAGTAA
429342 TTCATAGTAA
1 TTCATAGTAA
429352 TTCAT
1 TTCAT
429357 TTGATTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (10 bp):
TTCATAGTAA
Found at i:434442 original size:32 final size:32
Alignment explanation
Indices: 434389--434483 Score: 111
Period size: 32 Copynumber: 2.9 Consensus size: 32
434379 ACACCCAATG
* *
434389 TATCGATACAT-TATGCTTTGTATCAATGCATTA
1 TATCGATACATGT-T-CATTGTATCAATACATTA
* * *
434422 TATTGATATATGTTCATTGTATCAATACATTG
1 TATCGATACATGTTCATTGTATCAATACATTA
*
434454 TATCGATACATGTTCATTGTATCGATACAT
1 TATCGATACATGTTCATTGTATCAATACAT
434484 GTTCATTGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
32 42 0.79
33 10 0.19
34 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.43
Consensus pattern (32 bp):
TATCGATACATGTTCATTGTATCAATACATTA
Found at i:434473 original size:19 final size:19
Alignment explanation
Indices: 434449--434523 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
434439 TGTATCAATA
434449 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGTT
434468 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGTT
**
434487 CATTGTATCGATACATGGA
1 CATTGTATCGATACATGTT
434506 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
434524 AAACTAGCAG
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
19 37 0.70
20 16 0.30
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.37
Consensus pattern (19 bp):
CATTGTATCGATACATGTT
Found at i:434591 original size:13 final size:13
Alignment explanation
Indices: 434573--434597 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
434563 CATGGCACAT
434573 TGTATCGATACAA
1 TGTATCGATACAA
434586 TGTATCGATACA
1 TGTATCGATACA
434598 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:434595 original size:33 final size:32
Alignment explanation
Indices: 434553--434617 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
434543 TACCACTGTT
434553 TGTATCGATACATG-GCACATTGTATCGATACAA
1 TGTATCGATACATGAG-A-ATTGTATCGATACAA
434586 TGTATCGATACATGATGAATTGTATCGATACA
1 TGTATCGATACATGA-GAATTGTATCGATACA
434618 TTGCTTCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 28 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.32
Consensus pattern (32 bp):
TGTATCGATACATGAGAATTGTATCGATACAA
Found at i:437679 original size:109 final size:109
Alignment explanation
Indices: 437512--437717 Score: 263
Period size: 109 Copynumber: 1.9 Consensus size: 109
437502 CGGAAGCTGT
* * *
437512 TGCTACCGTGGAAGCTGGAAGAGGCTCGAGCTGTTGGTTCATGGAGACTACTACTGTGCTCGTGG
1 TGCTACCGTGGAAGCTGGAAGAGGCTCGAGCTGCTCGTTCATGGAGACTACTACTGTGCTCGTCG
* *
437577 AAGCTGCTATTGGTGGATGCTACCGTCGTGCTCATAGAAATTGC
66 AAGCTGCTACTGGTGGATACTACCGTCGTGCTCATAGAAATTGC
* * * **
437621 TGCTACCTTGGAAGCTGG-AGAAGGCTCGAGCTGCTCGTTCATGGATG-TTGCTGTTGTGCTCGT
1 TGCTACCGTGGAAGCTGGAAG-AGGCTCGAGCTGCTCGTTCATGGA-GACTACTACTGTGCTCGT
* **
437684 CGAAGCTGCTGCTGGTGGATACTGTCGTCGTGCT
64 CGAAGCTGCTACTGGTGGATACTACCGTCGTGCT
437718 TGTGGAAGCT
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
108 2 0.02
109 79 0.96
110 1 0.01
ACGTcount: A:0.17, C:0.21, G:0.33, T:0.29
Consensus pattern (109 bp):
TGCTACCGTGGAAGCTGGAAGAGGCTCGAGCTGCTCGTTCATGGAGACTACTACTGTGCTCGTCG
AAGCTGCTACTGGTGGATACTACCGTCGTGCTCATAGAAATTGC
Found at i:437877 original size:71 final size:71
Alignment explanation
Indices: 437717--437878 Score: 191
Period size: 72 Copynumber: 2.3 Consensus size: 71
437707 GTCGTCGTGC
* * * *
437717 TTGTGGAAGCTATTGCAGTGCTCGTGGAAGCTACTGCTACCATGGAAGCTGGAAGAGGCTTGAGC
1 TTGTGGAGGCTATTGCTGTACTCGTGGAAGCTACTGCTACCATGGAAGCTGG-AGAGGCTCGAGC
*
437782 TGTTGGT
65 TGCTGGT
* * * * * *
437789 TCGTGGAGGCTGTTGCTGTACTTGTGGAAGTTGCTGCTACCTTGGAAGCTAGG-GAGGCTCGAGC
1 TTGTGGAGGCTATTGCTGTACTCGTGGAAGCTACTGCTACCATGGAAGCT-GGAGAGGCTCGAGC
437853 TGCTGGT
65 TGCTGGT
*
437860 TTGTGGAGGCTACTGCTGT
1 TTGTGGAGGCTATTGCTGT
437879 GTTCACGGAA
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
71 32 0.43
72 41 0.55
73 2 0.03
ACGTcount: A:0.17, C:0.17, G:0.36, T:0.30
Consensus pattern (71 bp):
TTGTGGAGGCTATTGCTGTACTCGTGGAAGCTACTGCTACCATGGAAGCTGGAGAGGCTCGAGCT
GCTGGT
Found at i:437889 original size:71 final size:71
Alignment explanation
Indices: 437742--437897 Score: 172
Period size: 71 Copynumber: 2.2 Consensus size: 71
437732 CAGTGCTCGT
* * * **
437742 GGAAGCTACTGCTACCATGGAAGCTGGAAGAGGCTTGAGCTGTTGGTTCGTGGAGGCTGTTGCTG
1 GGAAGCTGCTGCTACCATGGAAGCTGG-AGAGGCTCGAGCTGCTGGTTCGTGGAGGCTACTGCTG
**
437807 TACTTGT
65 TACTTAC
* * *
437814 GGAAGTTGCTGCTACCTTGGAAGCTAGG-GAGGCTCGAGCTGCTGGTTTGTGGAGGCTACTGCTG
1 GGAAGCTGCTGCTACCATGGAAGCT-GGAGAGGCTCGAGCTGCTGGTTCGTGGAGGCTACTGCTG
*
437878 T-GTTCAC
65 TACTT-AC
437885 GGAAGCTGCTGCT
1 GGAAGCTGCTGCT
437898 GGTGGATGTT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
70 2 0.03
71 44 0.63
72 22 0.31
73 2 0.03
ACGTcount: A:0.17, C:0.19, G:0.37, T:0.28
Consensus pattern (71 bp):
GGAAGCTGCTGCTACCATGGAAGCTGGAGAGGCTCGAGCTGCTGGTTCGTGGAGGCTACTGCTGT
ACTTAC
Found at i:438113 original size:107 final size:105
Alignment explanation
Indices: 437996--438190 Score: 291
Period size: 107 Copynumber: 1.8 Consensus size: 105
437986 TGCACATTGC
* * * * *
437996 TTTGCCCTCCACTTTTTCCCATTGCCATGCTTCATATGCTATCCACTTTCCTTCCCGTTAGCTTT
1 TTTGCCCTCCACTTATTCCCATTGCCATGCTTCACATGCTATCCACTTTCCTTCACATTAGCTTC
438061 CTTTCTTTTTCTTCTTTTTTATGTTCCAACTTTTCACGTTGT
66 CTTT-TTTTT-TTCTTTTTTATGTTCCAACTTTTCACGTTGT
* * * *
438103 TTTGCCCTCCACTTATTCCCATTGCCATGCTTCACATTCTATCTACTTTCTTTCACATTGGCTTC
1 TTTGCCCTCCACTTATTCCCATTGCCATGCTTCACATGCTATCCACTTTCCTTCACATTAGCTTC
438168 CTTTTTTTTTTCTTTTTTATGTT
66 CTTTTTTTTTTCTTTTTTATGTT
438191 TCGGCTCTTC
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
105 14 0.18
106 5 0.06
107 60 0.76
ACGTcount: A:0.12, C:0.29, G:0.08, T:0.52
Consensus pattern (105 bp):
TTTGCCCTCCACTTATTCCCATTGCCATGCTTCACATGCTATCCACTTTCCTTCACATTAGCTTC
CTTTTTTTTTTCTTTTTTATGTTCCAACTTTTCACGTTGT
Found at i:438534 original size:9 final size:9
Alignment explanation
Indices: 438517--438611 Score: 90
Period size: 9 Copynumber: 10.8 Consensus size: 9
438507 GACGGTTTTA
438517 TTTTT-ATT
1 TTTTTGATT
*
438525 TCTTTGATT
1 TTTTTGATT
* *
438534 TCTTT-AAT
1 TTTTTGATT
438542 -TTTTGATT
1 TTTTTGATT
438550 TTTTTGATT
1 TTTTTGATT
438559 TTTTTGATT
1 TTTTTGATT
438568 TTTTTGATT
1 TTTTTGATT
*
438577 TTCTAT-ATT
1 TT-TTTGATT
*
438586 TTTTGTTATT
1 TTTT-TGATT
*
438596 TTTTTTATT
1 TTTTTGATT
438605 TTTTTGA
1 TTTTTGA
438612 AATTTTTAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
7 3 0.04
8 9 0.12
9 53 0.72
10 9 0.12
ACGTcount: A:0.14, C:0.03, G:0.07, T:0.76
Consensus pattern (9 bp):
TTTTTGATT
Found at i:438555 original size:25 final size:24
Alignment explanation
Indices: 438516--438570 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
438506 TGACGGTTTT
438516 ATTTTTATTTCTTTGATTTCTTTA
1 ATTTTTATTTCTTTGATTTCTTTA
* * *
438540 ATTTTTGATTTTTTTGATTTTTTTG
1 ATTTTT-ATTTCTTTGATTTCTTTA
438565 ATTTTT
1 ATTTTT
438571 TTGATTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.15, C:0.04, G:0.07, T:0.75
Consensus pattern (24 bp):
ATTTTTATTTCTTTGATTTCTTTA
Found at i:438566 original size:34 final size:35
Alignment explanation
Indices: 438517--438605 Score: 94
Period size: 34 Copynumber: 2.5 Consensus size: 35
438507 GACGGTTTTA
*
438517 TTTTT-ATTTCTTTGATTTCTTTAATTTT-TGAT-T
1 TTTTTGATTTTTTTGATTTCTTTAATTTTCT-ATAT
* *
438550 TTTTTGATTTTTTTGATTTTTTTGATTTTCTATAT
1 TTTTTGATTTTTTTGATTTCTTTAATTTTCTATAT
*
438585 TTTTTGTTATTTTTTTTATTT
1 TTTTTG--ATTTTTTTGATTT
438606 TTTTGAAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
33 5 0.11
34 22 0.47
35 8 0.17
37 12 0.26
ACGTcount: A:0.13, C:0.03, G:0.07, T:0.76
Consensus pattern (35 bp):
TTTTTGATTTTTTTGATTTCTTTAATTTTCTATAT
Found at i:438569 original size:16 final size:16
Alignment explanation
Indices: 438527--438578 Score: 68
Period size: 16 Copynumber: 3.1 Consensus size: 16
438517 TTTTTATTTC
* *
438527 TTTGATTTCTTTAATT
1 TTTGATTTTTTTGATT
438543 TTTGATTTTTTTGATTTT
1 TTTGATTTTTTTGA--TT
438561 TTTGATTTTTTTGATT
1 TTTGATTTTTTTGATT
438577 TT
1 TT
438579 CTATATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 16 0.50
18 16 0.50
ACGTcount: A:0.13, C:0.02, G:0.10, T:0.75
Consensus pattern (16 bp):
TTTGATTTTTTTGATT
Found at i:438586 original size:27 final size:28
Alignment explanation
Indices: 438545--438611 Score: 52
Period size: 28 Copynumber: 2.4 Consensus size: 28
438535 CTTTAATTTT
*
438545 TGATTTTTTTGATTTTTTTGATTTTTT-
1 TGATTTTTTTGATTTTTATGATTTTTTG
*
438572 TGATTTTCTAT-ATTTTT-TGTTATTTTTT-
1 TGATTTT-TTTGATTTTTATG--ATTTTTTG
*
438600 TTATTTTTTTGA
1 TGATTTTTTTGA
438612 AATTTTTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
26 2 0.06
27 15 0.45
28 16 0.48
ACGTcount: A:0.13, C:0.01, G:0.09, T:0.76
Consensus pattern (28 bp):
TGATTTTTTTGATTTTTATGATTTTTTG
Found at i:439264 original size:42 final size:42
Alignment explanation
Indices: 439143--440003 Score: 713
Period size: 42 Copynumber: 20.5 Consensus size: 42
439133 TAGTCTTCAG
* * * *
439143 GGTCAAAGCCGACAGTCAGACTTAGGGATAGAAAAGT-TTTCAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGA-AGGAAAGTCTCT-AA
* * * * * * * *
439186 GGTTAAAACCGATAGGTAAACTAAGGGTAGAAAAGTCTTTAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* * * * *
439228 GGTCAAAGCCGGCAAGCAGACTTATGGAAGGAAAGTCTCTAT
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* * * * *
439270 GGTCAAAGCTGAGAAGCAGACTGAGGGAAGGAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* * * *
439312 GGTCAAAGCTGATAGGCAGACTAAGGGATAGAAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGA-AGGAAAGTCTCTAA
* * * *
439355 GGTCAAAGCCGACAGGCAAACTGA-GAAAGGAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* ** * * * *
439396 GGACAAAATCGATAAGCAGATTGAGGGAAGGAAAGTCTCTAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* * * * * * *
439438 GGTCAAAGCTGGCTGGCAGACTAAAGAAAGGAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* *
439480 GGTTAAAGTCGACAGGCAGACTAAGGGAAGGAAAGTCTCT-A
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* *
439521 GGTTCAAAGCCGA-TGAGCAGACTAAGGGTAGGAAAGTCTC-AA
1 GG-TCAAAGCCGACAG-GCAGACTAAGGGAAGGAAAGTCTCTAA
* * *
439563 TGGTCAAAGCCGACAGGCAGACTAACGGATAGAAAAGTCT-TCAG
1 -GGTCAAAGCCGACAGGCAGACTAAGGGA-AGGAAAGTCTCT-AA
* * ** *
439607 GGTCAAAGCCAATAGGCAGAC-CGGGGAAGGAAAATCTCT-A
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* * * *
439647 GGATCAAAACCGACAGGCAGACTGAGGGAAAGAAAGTCTCTAG
1 GG-TCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* * * *
439690 GGTCAAAGTCGACAGGCAGCCTAAGGGAAGGAAAATGTCTAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* * * * *
439732 GGTCAAAGCCGACAGGCACACTAAAGGATAGAAAAGTCTCCAG
1 GGTCAAAGCCGACAGGCAGACTAAGGGA-AGGAAAGTCTCTAA
* * * *
439775 GGTCAAAGTCGATAGGCA-ACTGAA--GAAAGAAAGTCTCTAG
1 GGTCAAAGCCGACAGGCAGACT-AAGGGAAGGAAAGTCTCTAA
* * * *
439815 GGTCAAAACCAACAGGCAGACTGAGGGAAGGAAAGTCTCCAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* * * *
439857 GGTCAAAGCCGATAGGCAGACTTAGGGAAGGAAATTCTCCAA
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* * * **
439899 GGTCAAAGCTGATAGGCAAACTAAGGGAAAAAAAGTCTCT-A
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* * *
439940 GGTCAAAGCTGATAGGCAGACTAAGGGAAGAAAAGTCTCT-A
1 GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
* *
439981 GGTCAAAGCTGATAGGCAGACTA
1 GGTCAAAGCCGACAGGCAGACTA
440004 TTTATGAGGG
Statistics
Matches: 660, Mismatches: 138, Indels: 42
0.79 0.16 0.05
Matches are distributed among these distances:
40 28 0.04
41 125 0.19
42 390 0.59
43 116 0.18
44 1 0.00
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.16
Consensus pattern (42 bp):
GGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAA
Found at i:444026 original size:71 final size:71
Alignment explanation
Indices: 443951--444087 Score: 197
Period size: 71 Copynumber: 1.9 Consensus size: 71
443941 TACACTGAAG
* * *
443951 AATGTATCGATACATTCTTACATGTAT-GATACATTAAAAAATATA-CTGATACATTTGGGTGAA
1 AATGTATCGATACAGTCATACATGTATCGATACATTAAAAAATATATC-GATACATCTGGGT-AA
444014 AAAGATAA
64 AAAGATAA
* *
444022 AATGTATCGATACAGTCATACATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAA
1 AATGTATCGATACAGTCATACATGTATCGATACATTAAAAAATATATCGATACATCTGGGTAAAA
444087 A
66 A
444088 TATGACTTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
71 30 0.51
72 28 0.47
73 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (71 bp):
AATGTATCGATACAGTCATACATGTATCGATACATTAAAAAATATATCGATACATCTGGGTAAAA
AGATAA
Found at i:444067 original size:91 final size:91
Alignment explanation
Indices: 443881--444076 Score: 209
Period size: 91 Copynumber: 2.2 Consensus size: 91
443871 TTTTAACTAG
*** * * *
443881 ATGTATCGATACATTATTCAATGTA-TCGATACATCTGGGTAAAAAAATAGAATGTATTGATACA
1 ATGTATCGATACATTAAAAAATATACT-GATACATCTGGGTAAAAAAATAAAATGTATCGATACA
* ** *
443945 CTGAAGAATGTATCGATACATTCTTAC
65 CTCAAGAATGTATCGATACATTCAAAA
* *
443972 ATGTAT-GATACATTAAAAAATATACTGATACATTTGGGTGAAAAAGATAAAATGTATCGATACA
1 ATGTATCGATACATTAAAAAATATACTGATACATCTGGGT-AAAAAAATAAAATGTATCGATACA
* * *
444036 GTCATA-CATGTATCGATACATTGAAAA
65 CTCA-AGAATGTATCGATACATTCAAAA
444063 ATGTATCGATACAT
1 ATGTATCGATACAT
444077 CTGGGTAAAA
Statistics
Matches: 86, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
90 26 0.30
91 52 0.60
92 8 0.09
ACGTcount: A:0.41, C:0.12, G:0.15, T:0.32
Consensus pattern (91 bp):
ATGTATCGATACATTAAAAAATATACTGATACATCTGGGTAAAAAAATAAAATGTATCGATACAC
TCAAGAATGTATCGATACATTCAAAA
Found at i:444076 original size:20 final size:20
Alignment explanation
Indices: 444020--444076 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
444010 TGAAAAAGAT
*
444020 AAAATGTATCGATACAGTCA
1 AAAATGTATCGATACATTCA
* * *
444040 TACATGTATCGATACATTGA
1 AAAATGTATCGATACATTCA
444060 AAAATGTATCGATACAT
1 AAAATGTATCGATACAT
444077 CTGGGTAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (20 bp):
AAAATGTATCGATACATTCA
Found at i:444961 original size:28 final size:28
Alignment explanation
Indices: 444875--445367 Score: 508
Period size: 28 Copynumber: 17.2 Consensus size: 28
444865 AAAAACAAAA
444875 GTGCCACTAACTTGTGTGGGCTTTGAAAAGAG
1 GTGCCACTAAC-T-TGTGGGCTTTG-AAAG-G
* **
444907 TTGCCACCGACTTGTGTGGGCTTTGAAAGG
1 GTGCCACTAAC-T-TGTGGGCTTTGAAAGG
*
444937 GTGCCACCAACTTGTGGGCTTTGAAAGG
1 GTGCCACTAACTTGTGGGCTTTGAAAGG
*
444965 GTATGCTACTAACTTGTGGGCTTTGAAAGG
1 G--TGCCACTAACTTGTGGGCTTTGAAAGG
444995 GTGCCACTAACTTGTGGGCTTTGAAAGG
1 GTGCCACTAACTTGTGGGCTTTGAAAGG
* * *
445023 GTACCACTGACTTGTGGGCTGTGAAAGG
1 GTGCCACTAACTTGTGGGCTTTGAAAGG
* * * *
445051 GTGCCACTTACTTGTGGCCATTGAAGGG
1 GTGCCACTAACTTGTGGGCTTTGAAAGG
445079 GTGCCACTAACTTAG-GGGCTTTG-AAGAG
1 GTGCCACTAACTT-GTGGGCTTTGAAAG-G
* * * *
445107 GTACTACTGACTTGTTGGCTTTGAAAGG
1 GTGCCACTAACTTGTGGGCTTTGAAAGG
* * * *
445135 ATACCACTGACTTATGGGCTTTGGAAA-G
1 GTGCCACTAACTTGTGGGCTTT-GAAAGG
445163 GTGCCACTAACTTGTGGGCTTTGAAAGG
1 GTGCCACTAACTTGTGGGCTTTGAAAGG
* *
445191 ATGCCACTAACTTGTGGTCTTTTG-AAGAG
1 GTGCCACTAACTTGTGGGC-TTTGAAAG-G
* *
445220 ATGCCACTAACTTGTGGGCTTTGAAATG
1 GTGCCACTAACTTGTGGGCTTTGAAAGG
* *
445248 ATGCCACTGACTTGTGGGCTTTGAAAGG
1 GTGCCACTAACTTGTGGGCTTTGAAAGG
* *
445276 ATGCCACTAACTTGTGTGCTTTGAAAGG
1 GTGCCACTAACTTGTGGGCTTTGAAAGG
* *
445304 GTTGCCACTGACTTGTGGGCTTTGAAAAG
1 G-TGCCACTAACTTGTGGGCTTTGAAAGG
** * * *
445333 AAGCCACTGACTTGTGGACTTTGAAATG
1 GTGCCACTAACTTGTGGGCTTTGAAAGG
*
445361 ATGCCAC
1 GTGCCAC
445368 GGACCTATGG
Statistics
Matches: 399, Mismatches: 50, Indels: 28
0.84 0.10 0.06
Matches are distributed among these distances:
27 7 0.02
28 272 0.68
29 58 0.15
30 36 0.09
31 4 0.01
32 22 0.06
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (28 bp):
GTGCCACTAACTTGTGGGCTTTGAAAGG
Found at i:445103 original size:84 final size:84
Alignment explanation
Indices: 444875--445367 Score: 508
Period size: 85 Copynumber: 5.8 Consensus size: 84
444865 AAAAACAAAA
* **
444875 GTGCCACTAACTTGTGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGTG
1 GTGCCACTAAC-T-TGTGGGCTTTG-AAAG-GGTGCCACTAAC-T-TGTGGGCTTTGAAAGGGTG
*
444940 CCACCAACTTGTGGGCTTTGAAAGG
60 CCACTAACTTGTGGGCTTTGAAAGG
* *
444965 GTATGCTACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTACCAC
1 G--TGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCAC
* *
445030 TGACTTGTGGGCTGTGAAAGG
64 TAACTTGTGGGCTTTGAAAGG
* * * * * *
445051 GTGCCACTTACTTGTGGCCATTGAAGGGGTGCCACTAACTTAG-GGGCTTTG-AAGAGGTACTAC
1 GTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTT-GTGGGCTTTGAAAG-GGTGCCAC
* *
445114 TGACTTGTTGGCTTTGAAAGG
64 TAACTTGTGGGCTTTGAAAGG
* * * * *
445135 ATACCACTGACTTATGGGCTTTGGAAA-GGTGCCACTAACTTGTGGGCTTTGAAAGGATGCCACT
1 GTGCCACTAACTTGTGGGCTTT-GAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACT
*
445199 AACTTGTGGTCTTTTG-AAGAG
65 AACTTGTGGGC-TTTGAAAG-G
* * * * *
445220 ATGCCACTAACTTGTGGGCTTTGAAATGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTA
1 GTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTA
*
445285 ACTTGTGTGCTTTGAAAGG
66 ACTTGTGGGCTTTGAAAGG
* * ** * * * *
445304 GTTGCCACTGACTTGTGGGCTTTGAAAAGAAGCCACTGACTTGTGGACTTTGAAATGATGCCAC
1 G-TGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCAC
445368 GGACCTATGG
Statistics
Matches: 349, Mismatches: 42, Indels: 29
0.83 0.10 0.07
Matches are distributed among these distances:
83 4 0.01
84 133 0.38
85 135 0.39
86 41 0.12
87 1 0.00
88 9 0.03
89 4 0.01
90 12 0.03
91 1 0.00
92 9 0.03
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (84 bp):
GTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTA
ACTTGTGGGCTTTGAAAGG
Found at i:446651 original size:10 final size:10
Alignment explanation
Indices: 446638--446717 Score: 64
Period size: 10 Copynumber: 8.5 Consensus size: 10
446628 CCCTTTTTTG
446638 TTTTTTTGTT
1 TTTTTTTGTT
446648 TTTTTTTG--
1 TTTTTTTGTT
*
446656 -TTTTTGGTT
1 TTTTTTTGTT
446665 TTTTTTTG--
1 TTTTTTTGTT
446673 TTTTTTTGTT
1 TTTTTTTGTT
**
446683 TTGGTTT-TT
1 TTTTTTTGTT
* *
446692 TTTTCTTGGT
1 TTTTTTTGTT
446702 TTTTTTTGTT
1 TTTTTTTGTT
446712 TGTTTT
1 T-TTTT
446718 GGTACGAAGG
Statistics
Matches: 53, Mismatches: 10, Indels: 13
0.70 0.13 0.17
Matches are distributed among these distances:
7 6 0.11
8 8 0.15
9 6 0.11
10 29 0.55
11 4 0.08
ACGTcount: A:0.00, C:0.01, G:0.15, T:0.84
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:446659 original size:24 final size:24
Alignment explanation
Indices: 446632--446717 Score: 95
Period size: 24 Copynumber: 3.6 Consensus size: 24
446622 CTAGACCCCT
446632 TTTTTGTTTTTTTGTT-TTTTTTTG
1 TTTTTGTTTTTTT-TTCTTTTTTTG
*
446656 TTTTTGGTTTTTTTTTGTTTTTTTG
1 TTTTT-GTTTTTTTTTCTTTTTTTG
* **
446681 TTTTGGTTTTTTTTTCTTGGTTT-
1 TTTTTGTTTTTTTTTCTTTTTTTG
*
446704 TTTTTGTTTGTTTT
1 TTTTTGTTTTTTTT
446718 GGTACGAAGG
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
23 12 0.22
24 22 0.41
25 20 0.37
ACGTcount: A:0.00, C:0.01, G:0.15, T:0.84
Consensus pattern (24 bp):
TTTTTGTTTTTTTTTCTTTTTTTG
Found at i:446659 original size:25 final size:24
Alignment explanation
Indices: 446631--446695 Score: 96
Period size: 25 Copynumber: 2.7 Consensus size: 24
446621 TCTAGACCCC
*
446631 TTTTTTGTTTTTTTGTTTTTTTTTG
1 TTTTTGGTTTTTTT-TTTTTTTTTG
446656 TTTTTGGTTTTTTTTTGTTTTTTTG
1 TTTTTGGTTTTTTTTT-TTTTTTTG
446681 -TTTTGGTTTTTTTTT
1 TTTTTGGTTTTTTTTT
446696 CTTGGTTTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
24 17 0.45
25 21 0.55
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (24 bp):
TTTTTGGTTTTTTTTTTTTTTTTG
Found at i:446666 original size:14 final size:13
Alignment explanation
Indices: 446631--446717 Score: 80
Period size: 14 Copynumber: 6.9 Consensus size: 13
446621 TCTAGACCCC
446631 TTTTTT-GTTTTT
1 TTTTTTGGTTTTT
446643 TTGTTTT--TTTTT
1 TT-TTTTGGTTTTT
*
446655 GTTTTTGG--TTT
1 TTTTTTGGTTTTT
446666 TTTTTT-GTTTTT
1 TTTTTTGGTTTTT
446678 TTGTTTTGGTTTTT
1 TT-TTTTGGTTTTT
446692 TTTTCTTGGTTTTT
1 TTTT-TTGGTTTTT
446706 TTTGTTT-GTTTT
1 TTT-TTTGGTTTT
446718 GGTACGAAGG
Statistics
Matches: 64, Mismatches: 2, Indels: 17
0.77 0.02 0.20
Matches are distributed among these distances:
10 1 0.02
11 12 0.19
12 13 0.20
13 15 0.23
14 22 0.34
15 1 0.02
ACGTcount: A:0.00, C:0.01, G:0.15, T:0.84
Consensus pattern (13 bp):
TTTTTTGGTTTTT
Found at i:446677 original size:35 final size:36
Alignment explanation
Indices: 446631--446718 Score: 126
Period size: 37 Copynumber: 2.4 Consensus size: 36
446621 TCTAGACCCC
446631 TTTTTTGTTTTTTTGTTTT-TTTTTGTTT-TTGGTTT
1 TTTTTTGTTTTTTTGTTTTGTTTTTGTTTCTTGG-TT
*
446666 TTTTTTGTTTTTTTGTTTTGGTTTTTTTTTCTTGGTT
1 TTTTTTGTTTTTTTGTTTT-GTTTTTGTTTCTTGGTT
446703 TTTTTTGTTTGTTTTG
1 TTTTTTGTTT-TTTTG
446719 GTACGAAGGA
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.40
37 20 0.42
38 9 0.19
ACGTcount: A:0.00, C:0.01, G:0.16, T:0.83
Consensus pattern (36 bp):
TTTTTTGTTTTTTTGTTTTGTTTTTGTTTCTTGGTT
Found at i:455037 original size:477 final size:474
Alignment explanation
Indices: 453665--455476 Score: 2407
Period size: 477 Copynumber: 3.8 Consensus size: 474
453655 CAAACATTTG
* * * *
453665 TGCTTTGGTTTTGCAAGAAACGCTTTT-TTCCCACCAATTTTTGTACATTCTAAGTTCGTGCCTC
1 TGCTTTGGTTTCGCAAGAAACG-TTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTC
* * ** * *
453729 AAATGAGATAAACATGGATTCTAGTAATCATTTTCATTCATTTTGTGATTAAGCACTATAAACAA
65 AAATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACAA
* * * * *
453794 ATTCTCCTCTTTGGAATAAATGATATTGACGGTTTTCTTTGGCACAAAAATCTTTTTATTGCCTT
130 ATTCTCCTC-TTAGAATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCGTTTTATTGCCCT
* *
453859 ATTTTCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCAATGATTTTTGTAACAGTCTCCA
194 ATTTTCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCATTGATTCTTGTAACAGTCTCCA
* * * * *
453924 TTCTTTTTAAAATTCAGAACCAAAAGCACATTCTCTTTATTGGGATACATGACATT-ATTGCTTT
259 TTCTTTTCAAAATTGAGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGA-TGCTTT
* * * * * * *
453988 GGTGTTGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATGGAATTAATGTTTGTCTCTTAAATAA
323 GGTGTCGCAAGAGAAGCTTTTCTTTCCATCTTTAATGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
454053 GACAAACATGAATACTCATACTAATACCCATTCTTTCCAGGATTAGGCACTATAAACATAGTCTT
388 GACAAACATGAATACTCATACTAATCCCCATTCTTT-TAGGATTAGGCACCATAAACATAGTCTT
*
454118 CTCATAAGGATACATGATATTAA
452 CTCATAAGGATACATGATATTGA
* * * * *
454141 TGCTTTGGTTTCGCAAGAAACGTTTTTTTCCAACCAATTTTTGAAAAGTCTAAGTTCATTCCTTA
1 TGCTTTGGTTTCGCAAGAAACGTTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCA
* * * *
454206 AATGAAACAAACATGAATTCTAGTAAAGATCTTCATTAATTTTGTGATTAGGCACTACAAACAAA
66 AATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACAAA
* * * * * *
454271 TTCTCCTCATTAGGATAAATGATAATGATAGTTTTCTTTGGCATGGAAATC-TTTTCATTACCCT
131 TTCTCCTC-TTAGAATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCGTTTT-ATTGCCCT
* *
454335 ATTTTCCTTAAAATCAATGTTTGTCCCCTCAATAGGGCAAGCATTGGTTCTTGTAACAGTCTCCA
194 ATTTTCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCATTGATTCTTGTAACAGTCTCCA
* * *
454400 TTCTTTTAAAAATTGAGAACCAAAAACACATTCCCTTTATTAGGATACTTGTCATTGATGCTTTG
259 TTCTTTTCAAAATTGAGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTG
* * * ** *
454465 GTGCCACAAGAAAAGCTTTGT-TTTCCA-CTGTTAATTTTAGAATCAAAGTTTGTCTCATAAATA
324 GTGTCGCAAGAGAAGCTTT-TCTTTCCATCT-TTAATGATAGAATCAAAGTTTGTCTCTTAAATA
* * * ** **
454528 ATACAAACATTAATACTCCTACTAATCCCCATTCATTTTAGGATTAGGCACCCCAAATGTAGTCT
387 AGACAAACATGAATACTCATACTAATCCCCATTC-TTTTAGGATTAGGCACCATAAACATAGTCT
*
454593 TCTCATAAGGATACACGATATTGA
451 TCTCATAAGGATACATGATATTGA
* * * *
454617 TGCATTGGTTTCGCAAGAAACGTTTTCTTCTCACCAATTTTTGTAAAGTCTAAGTCCGTGCCTCC
1 TGCTTTGGTTTCGCAAGAAACGTTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCT-C
* * *
454682 AAA-GAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTCGTGAGTAGGCACTATAAACAC
65 AAATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACAA
* *
454746 ATTCTCCTCTCTAGAATAAATGATATTGATGGATTTT-TTTGGCATGAAAATCGTTTGATTTGCC
130 ATTCTCCTCT-TAGAATAAATGATATTGATGG-TTTTCTTTGGCACGAAAATCGTTTTA-TTGCC
* * * *
454810 CTATTTTCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCACTGATTCTAGTAATAGCCTC
192 CTATTTTCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCATTGATTCTTGTAACAGTCTC
* * * * **
454875 CATTCTTTTCAAAATTAAGAACCAAAAACACATTCTCTTCATTAGGATACGTGGTATTGATGCTT
257 CATTCTTTTCAAAATTGAGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTT
*
454940 TGGTGTCGCAAGAGAAGTTTTTCTTTCCATCTTTAATGATAGAATCAAAGTTTGTCTCTTAAATA
322 TGGTGTCGCAAGAGAAGCTTTTCTTTCCATCTTTAATGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
455005 AGATAAACATGAATACTCATAGTAATCCCCATTCTTTTCAAGATTAGGCAACATAAGCATAGTCT
387 AGACAAACATGAATACTCATACTAATCCCCATTCTTTT-AGGATTAGGCACCATAAACATAGTCT
455070 TCTCATAAGGATACATGATATTGA
451 TCTCATAAGGATACATGATATTGA
* * * *
455094 TGCTTTGGTTTCGAAAGAAAAGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTTCCTCA
1 TGCTTTGGTTTCGCAAGAAACGTTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCA
* * * *
455159 AATGAGACAATCATGGATTCTTGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACATA
66 AATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACAAA
* *
455224 TTCTCCT-TAGTTGGATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCGTTTTATTTGCCC
131 TTCTCCTCT--TAGAATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCGTTTTA-TTGCCC
* * *
455288 TATTTTCCTTAAATTCAAAGTTTGTCCCCTCAATAGGGCAAGTATTGATTCTTGTAACAGTCTCT
193 TATTTTCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCATTGATTCTTGTAACAGTCTCC
* * **
455353 ATTCTTTTCAAAATTGAGAACCAAAATCACATTCCCTTGATTAGGCCACATGACATTGATGCTTT
258 ATTCTTTTCAAAATTGAGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTT
* * *
455418 GGTGTCGCAAGAGAAGCTTTTCCTTCCATCTTTAATGATAGATTCAACGTTTGTCTCTT
323 GGTGTCGCAAGAGAAGCTTTTCTTTCCATCTTTAATGATAGAATCAAAGTTTGTCTCTT
455477 GAAAATAATG
Statistics
Matches: 1162, Mismatches: 157, Indels: 33
0.86 0.12 0.02
Matches are distributed among these distances:
475 10 0.01
476 558 0.48
477 592 0.51
478 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (474 bp):
TGCTTTGGTTTCGCAAGAAACGTTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCA
AATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACAAA
TTCTCCTCTTAGAATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCGTTTTATTGCCCTAT
TTTCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCATTGATTCTTGTAACAGTCTCCATT
CTTTTCAAAATTGAGAACCAAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGT
GTCGCAAGAGAAGCTTTTCTTTCCATCTTTAATGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
AAACATGAATACTCATACTAATCCCCATTCTTTTAGGATTAGGCACCATAAACATAGTCTTCTCA
TAAGGATACATGATATTGA
Found at i:455894 original size:208 final size:208
Alignment explanation
Indices: 455532--455947 Score: 622
Period size: 208 Copynumber: 2.0 Consensus size: 208
455522 AGAGACAAAC
* * * *
455532 TTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTGTCTTGCGACACCGAAGCATCAATGTCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATATCATG
**
455597 TATCCTAATGAAGGGAATGTGTTTCTAGTTCTCAATTTTGAAAAGAAGGGAGACTATTAGTAGAA
66 TATCCTAATGAAGGGAATGTGTTTCTAGTTCTCAATTTTGAAAAGAAGGGAGACTATTACAAGAA
* * *
455662 TAAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAGGGAAAATAGGGCAAATAAAAGAT-T
131 TAAATGCTTGCCCTATTAAGGGGACAAACTTTGATTTGAAGGAAAATAGGGCAAA-AAAA-ATAT
455726 TTCAA-GCCAAAGAA
194 TTCAATGCCAAAGAA
* *
455740 TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATATCATG
1 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATATCATG
* * * * *
455805 TATCCTAATGACA-GGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAGATTGTTACAAGA
66 TATCCTAATGA-AGGGAATGTGTTTCTAGTTCTCAATTTTGAAAAGAAGGGAGACTATTACAAGA
* *
455869 ATAGATGCTTGCCCTATTAAGGGGACGAACTTTGATTTGAAGGAAAATAGGGCAAAAAAAATATT
130 ATAAATGCTTGCCCTATTAAGGGGACAAACTTTGATTTGAAGGAAAATAGGGCAAAAAAAATATT
455934 TCAATGCCAAAGAA
195 TCAATGCCAAAGAA
455948 AACCGTCAAC
Statistics
Matches: 187, Mismatches: 18, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
206 2 0.01
207 10 0.05
208 174 0.93
209 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (208 bp):
TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATATCATG
TATCCTAATGAAGGGAATGTGTTTCTAGTTCTCAATTTTGAAAAGAAGGGAGACTATTACAAGAA
TAAATGCTTGCCCTATTAAGGGGACAAACTTTGATTTGAAGGAAAATAGGGCAAAAAAAATATTT
CAATGCCAAAGAA
Found at i:458089 original size:476 final size:474
Alignment explanation
Indices: 455740--458352 Score: 3216
Period size: 476 Copynumber: 5.5 Consensus size: 474
455730 AGCCAAAGAA
* * * * *
455740 TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATATCATG
1 TTTGATTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATG
*
455805 TATCCTAATGACA-GGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAGATTGTTACAAGA
66 TATCCTAATGA-AGGGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAGACTGTTACAAGA
* * *
455869 ATAGATGCTTGCCCTATTAAGGGGACGAACTTTGATTTGAAGGAAAATAGGGC-AA-AAAAAATA
130 ATAAATGCTTGCCCTATTAAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAAT-
* *
455932 TTTCAATGCCAAAGAAAACCGTCAACATCATTTATCCTAATGAGGAGAATGTGTTCATAGTGCCT
194 TTTC-ATGCCAAAGAAAACCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
455997 AATCACAAAATGAATGAGGATCAC-TACTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTA
258 AATCACAAAATGAATGAAGATC-CTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * * *
456061 GAATTTACAAAAATTAGTGGGAAAAAAGCATTTCTTACGAAACCAAAACATCAATATCATGTATC
322 GACTTTTCAAAAATTGGTGGG-AAAAAGCGTTTCTT-CGAAACCAAAGCATCAATATCATGTATC
* * *
456126 CTTATGAGAAGACAATGTTTATGGTGCCTAATCTTGAATAGAAAGGGGATTAGTATGAGTATTCA
385 CTTATGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAAAGGGGATTAGTATGAGTATTCA
456191 TGTTTGTCTTATTTAAGAGACAAAC
450 TGTTTGTCTTATTTAAGAGACAAAC
* * * * * * * *
456216 GTTGATTCTATCATTAAAGATGGAAAGAAAAGCTTCTCTTGCGACCCCAAAGCTTCAATGTCATT
1 TTTGATTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATG
* ** * *
456281 TATCCTAATGGAGGGAATGCATTTTTGGTTCTCAATTTTGAAAAGAATGGAGACTATTACGAGAA
66 TATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAGACTGTTACAAGAA
* * * * *
456346 TCAAA-GCATGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAACATT
131 T-AAATGCTTGCCCTATTAAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAATT
* * * *
456410 TTCCTACCAAAAAAAACCATCAACGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
195 TTCATGCCAAAGAAAACCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
*
456475 TCACAAAATGAATGAAGATCCTTACTAGAATCCAT-TTTGTCTCATTTGAGGAACGAACTTAGAC
260 TCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * * * * *
456539 TTTTTAAAAGTTGGGGGGTAGAAAGCGATTCTAGCAAAACCAAAGCATCAATATCATGTATCCTT
325 TTTTCAAAAATTGGTGGG-AAAAAGCGTTTCT-TCGAAACCAAAGCATCAATATCATGTATCCTT
* * * * * * * *
456604 ATGAGAAGACAATGTTAATGATGCGTAATTTTGAAAA-AAATGGAATTGGTATGAGTACTCATGT
388 ATGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAAAGGGGATTAGTATGAGTATTCATGT
456668 TTGTCTTATTTAAGAGACAAAC
453 TTGTCTTATTTAAGAGACAAAC
* * * * *
456690 TTTGATTGTATCAATAACGGTGGGAAAAAATGC-T-TCTTGCGGCACCAAAGCATCAATGTCACG
1 TTTGATTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATG
* * * * * * * *
456753 TATACAAATTAAGGGAATGTGTTTTTTGTTCTCGATTTTGAAAAAAATGGAGAATGATACAAGAA
66 TATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAGACTGTTACAAGAA
* * ** * *
456818 TCATTGCTTGCCCTA-TAGACTGGACAAACTTTGATTTTAAGGAAAATAGGGCGAAGAAAAGATT
131 TAAATGCTTGCCCTATTA-AGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAATT
* * * *
456882 TTCATGCCAAAGAAAACCATCAATATCCTTTATCCTAATGTGGAGAATGTGTTTATAGT-CAATA
195 TTCATGCCAAAGAAAACCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC-CTA
456946 ATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
259 ATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* *
457011 CTTTTCAAAATTTGGTTGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
324 CTTTTCAAAAATTGGTGGGAA-AAAGCGTTTCTT-CGAAACCAAAGCATCAATATCATGTATCCT
* * * * * ** * * *
457076 TATAAGAAGATTTTGTTTATAATGCCTAATTTTGAAAA-AAATAGAATTGGTATGAGTACTCATG
387 TATGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAAAGGGGATTAGTATGAGTATTCATG
*
457140 TTTGTCTTATTTGAGAGACAAAC
452 TTTGTCTTATTTAAGAGACAAAC
* * * * * **
457163 TTTGATTCTATCAATAACGGTGGGAAAAAATGC--ATCTTGCGGCACCAAAACATCAATGTCACA
1 TTTGATTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATG
* * * * * *
457226 TATACAAATTAAGGGAATGTGTTTTTGGTTCTCGATTTTGAAAAAAATGGAGAATGTTACAAGAA
66 TATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAGACTGTTACAAGAA
* * * * * *
457291 TCATTGCTTGCCCTATTGAGTGGACAAACGTTGATTTTAAGGAAAATAGGGCAAAGAAAACATTT
131 TAAATGCTTGCCCTATTAAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAATTT
* * * * * *
457356 TCGTGCCAAAGAAAACCATCAATATCCTTTATCCAAATGTGGAGAATGTATTTATAGT-CACTAA
196 TCATGCCAAAGAAAACCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC-CTAA
* * *
457420 TCACAAAATGAATGAAGATCCTTACTGGAATCCATGTTTGTGTCATTTGAGGCATGAACTTAGAC
260 TCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
457485 TTTTTC-AAAATTGGTGGGAAGAAAGCGTTTCTTTCAAAACCAAAACATCAATATCGTGTATCCT
325 -TTTTCAAAAATTGGTGGGAA-AAAGCGTTTC-TTCGAAACCAAAGCATCAATATCATGTATCCT
* * **
457549 TATGAGAAGACTATGTTTATGATGCCTAATCCTGAAAAGAACA-AGGATTAGCGTGAGTATTCAT
387 TATGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAA-AGGGGATTAGTATGAGTATTCAT
* * *
457613 GTTTGTTTTATTTAACAGGCAAAC
451 GTTTGTCTTATTTAAGAGACAAAC
* *
457637 TTTGATTCTATCAATAACGGTAGAAAAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGCCATG
1 TTTGATTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATG
* ** * * *
457702 TATCCTAATGAAGGAAATGTGTTTTTCATTCTTAATTTTGCAAAGAATGGGGACTGTTACAAGAA
66 TATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAGACTGTTACAAGAA
* * *
457767 TAAATGCTTCCCCTATTAAAGGGACAAATTTTGATTTTAAGGAAAATAGGGCAAA-AAAAAATAT
131 TAAATGCTTGCCCTATTAAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAAT-T
457831 TTCAATGCCAAAGAAAACCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
195 TTC-ATGCCAAAGAAAACCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * *
457896 ATCACAAAATGAATGAAGATCATGACTAGAATCCATCTTTGTCTCATTCGAGGCACAAACTTAGA
259 ATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
457961 CTTTACAAAAATTGGTGGGAAAAAGGCGTTTCTTCTGAAACCAAAGCATCAATAT-GTGCATCCT
324 CTTTTCAAAAATTGGTGGGAAAAA-GCGTTTCTTC-GAAACCAAAGCATCAATATCATGTATCCT
* * * * **
458025 TATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAAGGGGATTAGCGTGAGTATTCATG
387 TATGAGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAAAGGGGATTAGTATGAGTATTCATG
*
458090 TTTATCTTATTTAAGAGACAAAC
452 TTTGTCTTATTTAAGAGACAAAC
* * * * * ** * *
458113 TTTGATTCTATCATTAAAGATGGAAAGAAAAGCTTATCTCACGACAACAAAGCATGAATGTCATG
1 TTTGATTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATG
* * * *
458178 TATCCTAATGAAGTGAATGTGTTTTTGGTTCTTAGTTTTGAAAAGAATGGAGACTGTTATAAGAA
66 TATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAGACTGTTACAAGAA
* * * *
458243 TCAAA-GCTTACCCTATTGAGGGGACAAACTTTAATTTTAAGGAAAATAGGG-AAATGAAAAGAT
131 T-AAATGCTTGCCCTATTAAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAA-GAAAAAAT
* * * * **
458306 TTTCGTGCCAAAGATATCCATCAATATCATTTCCCCTAATGAGGAGA
194 TTTCATGCCAAAGAAAACCATCAACATCATTTATCCTAATGAGGAGA
458353 TTCTTTTTGT
Statistics
Matches: 1865, Mismatches: 242, Indels: 61
0.86 0.11 0.03
Matches are distributed among these distances:
471 3 0.00
472 217 0.12
473 544 0.29
474 146 0.08
475 159 0.09
476 623 0.33
477 166 0.09
478 7 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (474 bp):
TTTGATTCTATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATG
TATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAGACTGTTACAAGAA
TAAATGCTTGCCCTATTAAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAAATTT
TCATGCCAAAGAAAACCATCAACATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
CACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
TTTCAAAAATTGGTGGGAAAAAGCGTTTCTTCGAAACCAAAGCATCAATATCATGTATCCTTATG
AGAAGACTATGTTTATGATGCCTAATCTTGAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTG
TCTTATTTAAGAGACAAAC
Found at i:461219 original size:474 final size:476
Alignment explanation
Indices: 459052--467677 Score: 10156
Period size: 475 Copynumber: 18.2 Consensus size: 476
459042 TCCTTATGAG
* * *
459052 AAGAAT-AAGTGCTTGCCCTATTTAGGGGACAAACTTTGATTTTAGGGAAAATAGGGCAAATAAA
1 AAGAATCAA-TGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
** * ** * *
459116 AGATTTTCAAGCCAAAGAAAACCATCAATATGATTTATCCTAATGACAAGAACGTGTTTACAGTG
65 AGATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* *
459181 CCTAATCACAAAATAAATGAAGATCAC-TACTAGAATCCATCTTTGTCTCATTTGAGGCACAAAC
130 CCTAATCACAAAATGAATGAAGATC-CTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAAC
* * * *
459245 TTAGAATTTACAAAAATTGGTGGGAAGAAGGCGTTTCTTGCGAAACCAAAGCGTCAATAT-GTGT
194 TTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGT
* * * * *
459309 ATCCTTATGAGAGGACTATGTTTATGGTGGCTAATCTTGAAAAGAAAGAGGATTAGTATGTGTAT
259 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTAT
*
459374 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCATTAAAGATGGAAAGAAAAGCTTCT
324 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAAGATGGAAAGAAAAGCTTCT
* * *
459439 CTTGCGACAACAAAGCATCAATGTCATGTATCCTAATGAAGTGAATGTGTTTTTGGTTCTTAATT
389 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATT
* *
459504 TTTAAAAGAATGGAAACTGTTAC
454 TTGAAAAGAATGGAGACTGTTAC
* * * * *
459527 AAGAATCAAAGCTTACCCTATTGCGGGGACAAACTTTGATTTTAAGGAAAATAGGGTAATGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
459592 GATTTTCGTGCCAAAGATATCCATCAGTATCATTTCTCCTAACGAGGAGAATGTGTTTATAGTGC
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * * *
459657 CTAATCACAAAATGAATGAAGAACCTTACTAGAATCCATGTTTTTCTGATTTAAGGCACGAACAT
131 CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACTT
* * *
459722 ATACTTTTTAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCTTCAATATCGTGTAT
196 AGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTAT
* * * * *
459787 CCTTGTGACAAGGCTACGTTTATGGTGCCTAATCCTGAAAA-AAATGGTGATTAGTATGAGTATT
261 CCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAA-GGGGATTAGTATGAGTATT
* * * * * * *
459851 CATGTTTGTTTTATTTAAGCA-CCCACCTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCT
325 CATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAATAAAGATGGAAAGAAAAGCTTCT
* ** ** ** *
459915 CTTGTGACACCAAATAATCAATGTCACATATCAAAATGAAGGGAATATGTTTTTGGTTCTCAATT
389 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATT
459980 TT-AAAAGAATGGAGACTGTTAC
454 TTGAAAAGAATGGAGACTGTTAC
* * *
460002 AAGAATCATTGCTTGCCCAATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGTAAA-AAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * * *
460066 TGATTTCCATGCTAAAGAAAATCATCAATATAATTTATCCTAAT-ATGGACAATGTGTTTATAGT
66 -GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGT
** * * * *
460130 -CACTAATCACAAAATGCGTAAAGATCCTTACTAGAATCCATGTTTGTATCATTTGAGGCATGAA
129 GC-CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAA
* * * * *
460194 CTTAGACGTTTCAAAATTTAGTGGGAAGAAAGTGTTTCTTGAGAAACCAAAGCATCAATATCGTG
193 CTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * *
460259 TATCCCTATGGGAAGATTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGCATTAGTA
258 TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTA
* *
460324 TTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGATGGAAAGAAAAGCTTC
323 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAAGATGGAAAGAAAAGCTTC
*** * * * *
460389 TCTTGCGACACCAAAGCATCAATGTCATGTATAGAAACT-AAGGAAATATGTTTTAGTTTCTCAA
388 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA-TGAAGGGAATGTGTTTTTGGTTCTCAA
* * * *
460453 TTTTGAAAAAAAAGAGGGACTATTAC
452 TTTTGAAAAGAATG-GAGACTGTTAC
* * * * *
460479 AAGAATCAATGCTTGCCCTATTGAGGGGACCAACTTTGGTTTTAAGAAAAATGGGGCAAACAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
460544 GATTTTCGTGCAAAAG-AAACTATCAATATCATTTATCGTAACGAGGAGAATGTGTTTATAATGC
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * * *
460608 CTAATCACAAAATGAATGAAGATCGTCACTGGAATCCATCTTTGTATTATTTGAGGCACAAACTT
131 CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACTT
* * * * * *
460673 AGAATTTACAAAAATTGGTGGGAAAAAAGCATTTCTTGCGAAGCCAAAGCATCAATATCATGTAT
196 AGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTAT
* * *
460738 CCTTATGAGAAGACAATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGTTTAGCATGAGTATTC
261 CCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTC
* * * * *
460803 ATGTTTTTCTTATTTAGGAGACAAACCTTGATTCTACCATTAAAGATGGAAAGAAAAGCTTCTCT
326 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAAGATGGAAAGAAAAGCTTCTCT
* * * * **
460868 TGCAAC-CACAAAGCATCAATGTCGTTTATCCTAATGGAGGGAATGCATTTTTGGTTCTC-ATTT
391 TGCGACAC-CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATTT
*
460931 TGAAAAGAATGGAGACTATTAC
455 TGAAAAGAATGGAGACTGTTAC
* * * *
460953 AAGAATCAAAGCATGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAAGGCAATGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* *
461018 GA-TTTCTGTGCCAAAAAAAACCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
66 GATTTTC-GTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* *
461082 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCA-ATTTGTCTCATTTGAGGCATGAACT
130 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACT
* * *
461146 TAGACTTTTTAAAAATTGGGGGGAAGAAAGCGTTTCTTGCAAAACCAAAGCATCAATATCGTGTA
195 TAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTA
* * * * ** * * * *
461211 TTCTTATGAGAAGACAATGTTAATGATGCCTAATTTTGAAAA-AAATGGAATTGGTATGAGTACT
260 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATT
* * * *
461275 CATGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAATAACGACGGGAAGAAAAGC-T-TC
325 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAAGATGGAAAGAAAAGCTTCTC
* * * * * * **
461338 TTGTGACACCAAAACATCACCAT-TGC--GTATACAAATTAAGGGAATGTGTATTTGGTTCTCGG
390 TTGCGACACCAAAGCATCA--ATGT-CATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAA
* * *
461400 TTTTGAAAAAAAATGGAGAATGTGAC
452 TTTTG-AAAAGAATGGAGACTGTTAC
* * * *
461426 AGGAATCATTGCTTGCCGTATTGAGTGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
*
461491 GATTTTCGTGCCAAAGAAAACCATCAATATCCTTTATCCTAAT-ATGGAGAATGTGTTTATAGT-
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTG
* * * * *
461554 CACTAATCACCAAATGAATGAA-AGTCCTTACTATAATCCATGTTTGTCTCATTTGAGGTATGAA
130 C-CTAATCACAAAATGAATGAAGA-TCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAA
* * ** * *
461618 CTTAGACTTTTCAAAATTTGGTGGGAAGAAAACGTTTCTTAAGAAACCAAAGAATCAATATCATG
193 CTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * * * *
461683 TATCCTTATGAGAAGATTTTGTTTATAGTGCCTAATCTTGAAAAGGATGGGGATTAGTTTGAGCA
258 TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTA
* * *
461748 TTCGTGTTTGTCTTATTGAAGAGACAAACTTTGATTCTATCAA-AAACGGTGGAAAGAAAAGCTT
323 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAA-GATGGAAAGAAAAGCTT
* * * *
461812 TTCTTGCGACACCAAAGCATCAATGTCATGTAACCTAATGAAGAGAATGTGTTTTTAGTTCTCAA
387 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAA
* * * *
461877 ATTTGAGAAA-AATAGAGACCGTTAT
452 TTTTGA-AAAGAATGGAGACTGTTAC
* * * ** * **
461902 AAGAATCTATGCTGGCCC-ATTGATGGGACCGAGTTTGATTTTAAGGGCAATAGGGCAAAGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
** * *
461966 GATTTTCGACCCATAGAAAACCATCAATATCATTTATCCTAATTTAGG-GAATGTGTTTATAGTG
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTG
* * *
462030 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTATCTCATTTGACGCACGAAAT
130 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACT
* * * *
462095 TAGACTTTT-ATAAAATTGGTGAGAAGAAAGTGTTTCTTTCGAAACCAAAACATCAATATCGTGT
195 TAGACTTTTCA-AAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGT
* * * * * * *
462159 ATCCTTATGGGAAGACTATGTTTATGATGTCTAATCATCAAAAGAATGGGGATTAGTGTGAGTAT
259 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTAT
* * * * * * *
462224 TAATGTTTGT-TGTATTTAGGAGGCAAATTTTGATTCTAT-AATAACGGTGGAAAGAAAAGCTTT
324 TCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAATAAAGATGGAAAGAAAAGCTTC
* * * * **
462287 TCTTACGACATCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAAGTGTTTTTCATTCTCAAT
388 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAAT
*
462352 TTTGCAAAGAATGGAGACTGTTAC
453 TTTGAAAAGAATGGAGACTGTTAC
* *
462376 AAGAATAAATGCTTGCCCTATTAAAGGGG-CAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
1 AAGAATCAATGCTTGCCCTATT-GAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* *
462440 AGA-TTTCAATGCCAACGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
65 AGATTTTC-GTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * * *
462504 GCCGT-ATCACAAAATGAATGAAGATCATGACTAGAATCCATCTTTGTCTCATTTGAGTCACAAA
129 GCC-TAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAA
* *
462568 CTTAGAATTTACAAAAATTGGTGGGAA-AAAGGCGTTTCTTGCGAAACCAAAGCATCAATAT-GT
193 CTTAGACTTTTCAAAAATTGGTGGGAAGAAA-GCGTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * *
462631 GTATCCTTATGAGAAGACAATGTTTATGATGCCTAATCCTGAAAAGAAAGAGGATTAGTATAAGT
257 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGT
* *
462696 ATTCATGTTTGTCTTATTTAACAGACAAACTTTGATTC-ATCATTAAAGATGGAAAGAAAAGCTT
322 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAAGATGGAAAGAAAAGCTT
* * * * * *
462760 TTCTTGCAACAACAAAGCATCAATGTCATGTATCCTAAGGAAGTGAATGTGTTTTTGGTTCTTAA
387 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAA
*
462825 TTTTGAAAAGAATGGAAACTGTTAC
452 TTTTGAAAAGAATGGAGACTGTTAC
* * *
462850 AAGAATCAAAGCTTACCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAATGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
462915 GATTTTCGTGCCAAAGATATCCGTCAATATCATTTCTCCTAATGAGGAGAATGAGTTTATAGTGC
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * * * *
462980 CTAATCACAAAATGAATGAAGAACCTTACTAGAATCCATGTTTTTCTGATTTAAGGCATGAACAT
131 CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACTT
* * * * *
463045 ACACTTTT-TAAAATTGGTGGGAAGAAAGCATTTCTTACGAAACCAAAGCTTCAATATCGTGTAT
196 AGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTAT
* * *
463109 CCTTGTGAGAAGGCTAAGTTTATGGTGCCTAATCCTGAAAA-AAATGGGGATTAGTATGAGTATT
261 CCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAA-GGGGATTAGTATGAGTATT
* * *
463173 CATGTTTGTTTTATTTAAGCA-ACCAACTTTGATTTTATCAATAACAG-TGGAAAGAAAAGCTTC
325 CATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAATAA-AGATGGAAAGAAAAGCTTC
* * ** * * * *
463236 TCTTGTGACACCAAAGAATCAATGTCACATATCATAATGAAGGGATTATGTTTTTGGTTCTGAAT
388 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAAT
*
463301 TTTAAAAAGAATGGAGACTGTTAC
453 TTTGAAAAGAATGGAGACTGTTAC
* * * *
463325 AAGAATCATTGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGAGTAAAAAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * *
463390 GATTTCCATGCTAAAGAAAACCATCAATATCATTTATCCTAATGTA-GAGAATGTGTTTATAGT-
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTG
* * * * * * * *
463453 CATTAATCACAAAATGCATAAAGATCCTAACCAAAATCCATGTATGTCTCATTTGAGGCACGAAC
130 C-CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAAC
* * * *
463518 TTAGACTTTTCAAAATTTAGTTGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCGTGT
194 TTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGT
* * * * * * * * *
463583 ATCCTTATGAGAAGATTTTGTTTACGGTGCCTAATCTTGAACAGAATGGGCATTAGTTTGAGCAT
259 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTAT
* * * * *
463648 TCATGTTTGTCTTATTGAAGAGACAAA-TTTGGATTCTATCAATAACGGTCGAAAGAGAAGCTTC
324 TCATGTTTGTCTTATTTAAGAGACAAACTTT-GATTCTATCAATAAAGATGGAAAGAAAAGCTTC
* * * * * * *
463712 TCTTGCGACACCCAAGCATCAATGTCATGTAACCTAAGGAAGAGAATGT-TTTTTAGTTCCCAAA
388 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAAT
* ** * *
463776 TTTGAAAAAAATAAAGACAGTTAT
453 TTTGAAAAGAATGGAGACTGTTAC
* * ** * *
463800 AAGAATCAATGCTGGCCC-ATTGATGGGACCGAGTTTGATTTTAAGGACAATAGGGCAAAGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* **
463864 GATTTTCG-GCCCATAGAAAACCATCAATATCATTTATCCTAATTTGGAGAATGTGTTTATAGTG
66 GATTTTCGTG-CCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
*
463928 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTATCTCATTTGAGGCACGAACT
130 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACT
* * * * *
463993 TAGACTTTTTAAAAAATTTGTGGGAAGAAAGGGTTTCTTTCGAAACCAAAACATCAATATCGTGT
195 TAGAC-TTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGT
* * * * *
464058 ATCCTTATGAGAAGACTACGTTTATGATGCCTAATCCTAAAAAGAACGGGGATTAGTGTGAGTAT
259 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTAT
* * * * *
464123 TAATGTTTGTTTTATTTAAAAGGCAAATTTTGATTCTATCAATAATAG-TGGAAAGAAAAGCTTC
324 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAA-AGATGGAAAGAAAAGCTTC
* **
464187 TCTTGCGACACCAAAGCATCAATGTCAAGTATCCT-ATCGAAGGGAATGTGTTTTTCATTCTCAA
388 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-GAAGGGAATGTGTTTTTGGTTCTCAA
*
464251 TTTTGCAAAGAATGGAGACTGTTAC
452 TTTTGAAAAGAATGGAGACTGTTAC
* * * * *
464276 AAGAATAAATGCTTG-CCTACTAAAGGGTCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* *
464340 GA-TTTCAATGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAAAATGTGTTTATAGTG
66 GATTTTC-GTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * * * * *
464404 CCTTATCACAAAGTGATTGGAGATCATTACTAGAATCCATCTTTGCCTCATTTAAGGCACAAACT
130 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACT
* * * *
464469 TAGAATTTACAAAAATTGGTGGGAA-AAAGGCGTTTGTTGCAAAACCAAAGCATCAATAT-GTGT
195 TAGACTTTTCAAAAATTGGTGGGAAGAAA-GCGTTTCTTGCGAAACCAAAGCATCAATATCGTGT
* * * * *
464532 ATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCTAAAAAGAAAGAGGATTAGTGTGAGTAC
259 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTAT
* *
464597 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCATTAAAGATGGAAAGAAAAACTTCT
324 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAAGATGGAAAGAAAAGCTTCT
* * * * * *
464662 CTTGCGACAACAAAGCATCAATGTCTTATATCCTAATGAAGTGAATGTGATTTTGGTTCTTAATT
389 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATT
* *
464727 TTGAAAAGAATGGAAAGTGTTAC
454 TTGAAAAGAATGGAGACTGTTAC
* * *
464750 AAGAATCAAAGCTTACCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAATGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
464815 GATTTTCGTGCCAAGGATATCCATCAATATCATTTCTCCTAATGAGGAGAATGAGTTTATAGTGC
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
464880 CTAATCACAAAATGAATGAAGAACCTTACTAGAATCC-TAGTTTGTCTGATTTAAGGCACGAACA
131 CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCAT-CTTTGTCTCATTTGAGGCACGAACT
* * *
464944 TATACTTTTTAAAAATTGGTGGGAA-AAAGCGTTTCTTGCGAAACCAAAGCTTCAATATCGTGTA
195 TAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTA
* *
465008 TCCTTGTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-AAATGAGGATTAGTATGAGTAT
260 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAA-GGGGATTAGTATGAGTAT
* * * *
465072 TCATGTTTGTTTTATTTAAGCGACCAACTTTGATTTTATCAATAACAG-TGGAAAGAAAAGCTTC
324 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAA-AGATGGAAAGAAAAGCTTC
* * ** * * *
465136 TCTTGTGACACCAAAGAATCAATGTCACATATCATAATAAAGGGAATATGTTTTTGGTTCTCAAT
388 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAAT
*
465201 TTTAAAAAGAATGGAGACTGTTAC
453 TTTGAAAAGAATGGAGACTGTTAC
* * * *
465225 AAGAATCATTGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGAGTAAAAAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
465290 GATTTCCATGCTAAAGAAAACCATCAATATCATTTATCCTAATGTGGAGAATGCGTTTATAGT-C
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * * *
465354 ACTAATCACAAAATGCATAAAGATCCTTACCAAAATCCATGTTTATCTCATTTGAGGCACGAACT
131 -CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACT
* * * * * *
465419 TAGACTTTTCAAAATTTAGCGGGAAGAAAG-TTTTCTTGTGAAACCAAAGCATTAATATCGTGTA
195 TAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTA
* * * * * * * * *
465483 TCCTTATGAGAAGATTATGTTTGTGGTGCCTGATCTTGAAAAGGATGTGGATTAGCATTAGTATT
260 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATT
* * * *
465548 CATCTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAGTAACGATGGAAAGAAAAGCTTCTC
325 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAAGATGGAAAGAAAAGCTTCTC
* * * *** * *
465613 TTGCGACACTAAAGCATCAATGTCACGCATAGAAACT-AAGGGAATATGTTTTAGGTTCTCAATT
390 TTGCGACACCAAAGCATCAATGTCATGTATCCTAA-TGAAGGGAATGTGTTTTTGGTTCTCAATT
*
465677 TTGAAAAAAATAGG-GACTGTTAC
454 TTGAAAAGAAT-GGAGACTGTTAC
* * *
465700 AAGAATCAATGCTTACCCTATTGAGGGGACCAACTTTGGTTTTAA-GAAAACTAGGGCAAAGAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAA
* * * *
465764 AGATTTTCGTGCAAAAG-AAACTATCAATATCATTTATCCCAATGAGGAGAATGTGTTTATAATG
65 AGATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
** * * *
465828 CCTAATCACAAAATGAATGAAGATAGTTACTAGAATCCATCTTTGTCTTATTTGAGACACAAACT
130 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACT
* * * * * *
465893 TAGAATTTACAAAAATTGGTTGGAA-AAAGCAGTTTCTTGCAAAACCAAAGCATTAATATCATGT
195 TAGACTTTTCAAAAATTGGTGGGAAGAAAGC-GTTTCTTGCGAAACCAAAGCATCAATATCGTGT
* * *
465957 ATGCTTATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGCATGAGTAT
259 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTAT
* * * * * *
466022 TTAAGTTGGTCTTATTTAGGAGACAAACTTTGCTAT-TATCACTAAA-ATGGAAAGAAAAGCTTC
324 TCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAATAAAGATGGAAAGAAAAGCTTC
* * * *
466085 TCTTGCGACAACAAAGCATCAATGTCATCTATCCTAAAGAAGTGAATGTGTTTTTGGTTCTCAAT
388 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAAT
** *
466150 TTTGGCAAGAATAGAGACTGTTAC
453 TTTGAAAAGAATGGAGACTGTTAC
* * * * **
466174 AAGAATCAAAGCATGCCCTATTGAGGGGAGAAACTTTGATTTTAAGGAAAATAAGGCAATCAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * *
466239 GATTTTCGTGCAAAAAAAAACCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGC
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
466304 CTAATCACAAAATGAATGAAGATCCTTCCTAGAATCTAT-TTTGTCTCATTCGAGGCACGAACTT
131 CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACTT
* * * *
466368 AGGCTTTTTC-AAAATTGGGGGGGGGGGAA-AAAGCATTTCTTACGAAACCAAAGCATCAATATC
196 AGAC-TTTTCAAAAATT-----GGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATC
* * * ** *
466431 GTGTATCCTTATAAGAAGAC-AGTGTTAATGATGCCTAATTTTGAAAA-AAA-TGGA--A-T-TG
255 GTGTATCCTTATGAGAAGACTA-TGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * *
466489 -GTA-TGA-G--T-ACTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGCG-AAGAAAA
319 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAAGATG-GAAAGAAAA
** ** *
466547 GC-T-TCTTGCGACACCAAAGCATCAATGTCGCGTATACAAAAT-AAGGGAATGTGTTTTTGCTT
383 GCTTCTCTTGCGACACCAAAGCATCAATGTCATGTAT-CCTAATGAAGGGAATGTGTTTTTGGTT
* *
466609 CTCGATTTTGAATAA-AATGGAGAATGTTAC
447 CTCAATTTTGAA-AAGAATGGAGACTGTTAC
* * *
466639 AAGAATCATTGCTTGCCCTATAGAGTGGG-CAAACTTTGATTTTAAGGAAATTAGGGCAAAGAAA
1 AAGAATCAATGCTTGCCCTATTGAG-GGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * * *
466703 AGATTTTTGTGCAAAAG-AAACTATCAATATCATTTATCGC-AATGAGGAGAATGTGTTTATAAT
65 AGATTTTCGTGCCAAAGAAAACCATCAATATCATTTATC-CTAATGAGGAGAATGTGTTTATAGT
** * * *
466766 GCCTAATCACAAAATGAATGAAGATAGTTACTAGAATCCATCTTTGTCTTATTTGAGACACAAAC
129 GCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAAC
* * * * * * *
466831 TTAGAATTTACAAAAATTGGTTGGAA-AAAGCAATTTCTTGCAAAACCAAAGCATTAATATCATG
194 TTAGACTTTTCAAAAATTGGTGGGAAGAAAGC-GTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * *
466895 TATGCTTATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGCATGAGTA
258 TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTA
* * * *
466960 TTCAAGTTGGTCTTATTTAAGAGACAAACTTTGCTAT-TATCACTAAA-ATGGAAAGAAAAGCTT
323 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAATAAAGATGGAAAGAAAAGCTT
* * *
467023 CTCTTGCGACAACAAAGCATCAATGTCATGTATCCTAAAGAAGTGAATGTGTTTTTGGTTCTCAA
387 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAA
** *
467088 TTTTGGCAAGAATAGAGACTGTTAC
452 TTTTGAAAAGAATGGAGACTGTTAC
* * * * **
467113 AAGAATCAAAGCATGCCCTATTGAGGGGAGAAACTTTGATTTTAAGGAAAATAAGGCAATCAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * *
467178 GATTTCCGTGCCAAAAAAAACCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGC
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
467243 CTAATCACAAAATGAATGAAGATCCTTACTAGAATCTAT-TTTGTCTCATTCGAGGCACGAACTT
131 CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACTT
* * *
467307 AGGCTTTTTC-AAAATTGGGGGGGAAGAAAGCGTTTCTTACGAAACCAAAGCATCAATATCGTGT
196 AGAC-TTTTCAAAAATT-GGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGT
* * * ** *
467371 ATCCTTATAAGAAGAC-AGTGTTAATGATGCCTAATTTTGAAAA-AAA-TGGA--A-T-TG-GTA
259 ATCCTTATGAGAAGACTA-TGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTA
* * * *
467428 -TGA-G--T-ACTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGCG-AAGAAAAGC-T
323 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAAGATG-GAAAGAAAAGCTT
** ** * *
467486 -TCTTGCGACACCAAAGCATCAATGTCGCGTATACAAAAT-AAGGGAATGTGTTTTTGCTTCTCG
387 CTCTTGCGACACCAAAGCATCAATGTCATGTAT-CCTAATGAAGGGAATGTGTTTTTGGTTCTCA
* *
467549 ATTTTGAATAA-AGTGGAGAATGTTAC
451 ATTTTGAA-AAGAATGGAGACTGTTAC
* * *
467575 AAGAATCATTGCTTGCCCTATAGAGTGGG-CAAACTTTGATTTTAAGGAAATTAGGGCAAAGAAA
1 AAGAATCAATGCTTGCCCTATTGAG-GGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * *
467639 AGATTTTTGTGCAAAAG-AAACTATCAATATCATTTATCC
65 AGATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCC
467678 CAAGATTAGG
Statistics
Matches: 6887, Mismatches: 1107, Indels: 328
0.83 0.13 0.04
Matches are distributed among these distances:
460 11 0.00
461 84 0.01
462 137 0.02
463 43 0.01
464 93 0.01
465 167 0.02
466 40 0.01
467 15 0.00
468 7 0.00
469 5 0.00
470 3 0.00
471 47 0.01
472 24 0.00
473 340 0.05
474 1739 0.25
475 2993 0.43
476 923 0.13
477 139 0.02
478 66 0.01
479 11 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAACTT
AGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTAT
CCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTC
ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAAGATGGAAAGAAAAGCTTCTCT
TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATTTT
GAAAAGAATGGAGACTGTTAC
Found at i:462921 original size:949 final size:951
Alignment explanation
Indices: 459052--467677 Score: 9970
Period size: 949 Copynumber: 9.1 Consensus size: 951
459042 TCCTTATGAG
* * *
459052 AAGAAT-AAGTGCTTGCCCTATTTAGGGGACAAACTTTGATTTTAGGGAAAATAGGGCAAATAAA
1 AAGAATCAA-TGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
** * ** * *
459116 AGATTTTCAAGCCAAAGAAAACCATCAATATGATTTATCCTAATGACAAGAACGTGTTTACAGTG
65 AGATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
*
459181 CCTAATCACAAAATAAATGAAGATCAC-TACTAGAATCCATCTTTGTCTCATTTGAGGCAC-AAA
130 CCTAATCACAAAATGAATGAAGATC-CTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAAA
* * *
459244 CTTAGA-ATTTACAAAAATTGGTGGGAAGAAGGCGTTTCTTGCGAAACCAAAGCGTCAATAT-GT
194 -TTAGACTTTTA-AAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * * * *
459307 GTATCCTTATGAGAGGACTATGTTTATGGTGGCTAATCTTGAAAAGAAAGAGGATTAGTATGTGT
257 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGT
*
459372 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCATTAA-AGATGGAAAGAAAAGCT
322 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACA-ATGGAAAGAAAAGCT
* * *
459436 TCTCTTGCGACAACAAAGCATCAATGTCATGTATCCTAATGAAGTGAATGTGTTTTTGGTTCTTA
386 TCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCA
* * * *
459501 ATTTTTAAAAGAATGGAAACTGTTACAAGAATCAAA-GCTTACCCTATTGCGGGGACAAACTTTG
451 ATTTTGAAAAGAATGGAGACTGTTACAAGAAT-AAATGCTTGCCCTATTGAGGGGACAAACTTTG
* * * * * *
459565 ATTTTAAGGAAAATAGGGTAATGAAAAGATTTTCGTGCCAAAGATATCCATCAGTATCATTTCTC
515 ATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCGTGCCAAAGAAAACCATCAATATCATTTATC
* *
459630 CTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAACCTTACTAGAATCCA
579 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCA
* * * * * *
459695 TGTTTTTCTGATTTAAGGCACGAACATATACTTTTTAAAAATTGGTGGGAAGAAAGCGTTTCTTG
644 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTG
* * * * * * *
459760 CGAAACCAAAGCTTCAATATCGTGTATCCTTGTGACAAGGCTACGTTTATGGTGCCTAATCCTGA
709 CGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCTTGA
* * * * *
459825 AAA-AAA-TGGTGATTAGTATGAGTATTCATGTTTGTTTTATTTAAGCA-CCCACCTTTGATTTT
774 AAAGAAAGT-G-GATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCT
* * ** ** ** *
459887 ATCAATAACGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAATAATCAATGTCACATATCAAAAT
836 ATCAATAAAGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAG
* *
459952 GAAGGGAATATGTTTTTGGTTCTCAATTTT-AAAAGAATGGAGACTGTTAC
901 GAAGGGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAAACTGTTAC
* * *
460002 AAGAATCATTGCTTGCCCAATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGTAAA-AAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * * *
460066 TGATTTCCATGCTAAAGAAAATCATCAATATAATTTATCCTAAT-ATGGACAATGTGTTTATAGT
66 -GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGT
** * * * *
460130 -CACTAATCACAAAATGCGTAAAGATCCTTACTAGAATCCATGTTTGTATCATTTGAGGCATGAA
129 GC-CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAA
* * * * * * *
460194 CTTAGACGTTTCAAAATTTAGTGGGAAGAAAGTGTTTCTTGAGAAACCAAAGCATCAATATCGTG
193 ATTAGACTTTTAAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTG
* * * * * *
460259 TATCCCTATGGGAAGATTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGCATTAGTA
258 TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTA
* **
460324 TTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGATGGAAAGAAAAGCTTC
323 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACAATGGAAAGAAAAGCTTC
*** * * * *
460389 TCTTGCGACACCAAAGCATCAATGTCATGTATAGAAACT-AAGGAAATATGTTTTAGTTTCTCAA
388 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA-TGAAGGGAATGTGTTTTTGGTTCTCAA
* * * * * * *
460453 TTTTGAAAAAAAAGAGGGACTATTACAAGAATCAATGCTTGCCCTATTGAGGGGACCAACTTTGG
452 TTTTGAAAAGAATG-GAGACTGTTACAAGAATAAATGCTTGCCCTATTGAGGGGACAAACTTTGA
* * * * * *
460518 TTTTAAGAAAAATGGGGCAAACAAAAGATTTTCGTGCAAAAG-AAACTATCAATATCATTTATCG
516 TTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCGTGCCAAAGAAAACCATCAATATCATTTATCC
* * * * *
460582 TAACGAGGAGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCGTCACTGGAATCCAT
580 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCAT
* * * * * * * *
460647 CTTTGTATTATTTGAGGCACAAACTTAGAATTTACAAAAATTGGTGGGAAAAAAGCATTTCTTGC
645 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGC
* * *
460712 GAAGCCAAAGCATCAATATCATGTATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCCTGAA
710 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCTTGAA
* * * * * * *
460777 AAGAAAGGGGTTTAGCATGAGTATTCATGTTTTTCTTATTTAGGAGACAAACCTTGATTCTACCA
775 AAGAAAGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
460842 TTAAAGATGGAAAGAAAAGCTTCTCTTGCAAC-CACAAAGCATCAATGTCGTTTATCCTAATGG-
840 ATAAAGGTGGAAAGAAAAGCTTCTCTTGCGACAC-CAAAGCATCAATGTCATGTATCCTAA-GGA
** * *
460905 AGGGAATGCATTTTTGGTTCTC-ATTTTGAAAAGAATGGAGACTATTAC
903 AGGGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAAACTGTTAC
* * * *
460953 AAGAATCAAAGCATGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAAGGCAATGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* *
461018 GA-TTTCTGTGCCAAAAAAAACCATCAATGTCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
66 GATTTTC-GTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
461082 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCA-ATTTGTCTCATTTGAGGCATGAACT
130 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAAAT
* * *
461146 TAGACTTTTTAAAAATTGGGGGGAAGAAAGCGTTTCTTGCAAAACCAAAGCATCAATATCGTGTA
195 TAGACTTTTAAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTA
* * * * ** * * * *
461211 TTCTTATGAGAAGACAATGTTAATGATGCCTAATTTTGAAAAAAAT-GGAATTGGTATGAGTACT
260 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
* * * *
461275 CATGTTTGTCTTATTTGAGAGACAAACTTTGATTCTATCAATAACGACGGGAAGAAAAGC-T-TC
325 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACAATGGAAAGAAAAGCTTCTC
* * * * * * **
461338 TTGTGACACCAAAACATCACCAT-TGC--GTATACAAATTAAGGGAATGTGTATTTGGTTCTCGG
390 TTGCGACACCAAAGCATCA--ATGT-CATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAA
* * * * * * * *
461400 TTTTGAAAAAAAATGGAGAATGTGACAGGAATCATTGCTTGCCGTATTGAGTGGACAAACTTTGA
452 TTTTG-AAAAGAATGGAGACTGTTACAAGAATAAATGCTTGCCCTATTGAGGGGACAAACTTTGA
*
461465 TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCGTGCCAAAGAAAACCATCAATATCCTTTATCC
516 TTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCGTGCCAAAGAAAACCATCAATATCATTTATCC
* *
461530 TAAT-ATGGAGAATGTGTTTATAGT-CACTAATCACCAAATGAATGAA-AGTCCTTACTATAATC
580 TAATGA-GGAGAATGTGTTTATAGTGC-CTAATCACAAAATGAATGAAGA-TCCTTACTAGAATC
* * * *
461592 CATGTTTGTCTCATTTGAGGTATGAACTTAGACTTTTCAAAATTTGGTGGGAAGAAAACGTTTCT
642 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCT
** * * *** *
461657 TAAGAAACCAAAGAATCAATATCATGTATCCTTATGAGAAGATTTTGTTTATAGTGCCTAATCTT
707 TGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCTT
* * * * * * *
461722 GAAAAGGATGGGGATTAGTTTGAGCATTCGTGTTTGTCTTATTGAAGAGACAAACTTTGATTCTA
772 GAAAAGAAAGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTA
* * *
461787 TCAA-AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAACCTAAT
837 TCAATAAA-GGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAG
* * * * * * *
461851 GAAGAGAATGTGTTTTTAGTTCTCAAATTTGAGAAA-AATAGAGACCGTTAT
901 GAAGGGAATGTGTTTTTGGTTCTCAATTTTGA-AAAGAATGGAAACTGTTAC
* * * ** * **
461902 AAGAATCTATGCTGGCCC-ATTGATGGGACCGAGTTTGATTTTAAGGGCAATAGGGCAAAGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
** * *
461966 GATTTTCGACCCATAGAAAACCATCAATATCATTTATCCTAATTTAGG-GAATGTGTTTATAGTG
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAA-TGAGGAGAATGTGTTTATAGTG
* *
462030 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTATCTCATTTGACGCACGAAAT
130 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAAAT
* * * * *
462095 TAGACTTTTATAAAATTGGTGAGAAGAAAGTGTTTCTTTCGAAACCAAAACATCAATATCGTGTA
195 TAGACTTTTAAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTA
* * * * * *
462160 TCCTTATGGGAAGACTATGTTTATGATGTCTAATCATCAAAAGAATGGGGATTAGTGTGAGTATT
260 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
* * * * ** *
462225 AATGTTTGT-TGTATTTAGGAGGCAAATTTTGATTCTAT-AATAACGGTGGAAAGAAAAGCTTTT
325 CATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAATAACAATGGAAAGAAAAGCTTCT
* * * * **
462288 CTTACGACATCAAAGCATCAATGTCATGTATCCTATTGAAGGGAAAGTGTTTTTCATTCTCAATT
389 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATT
* *
462353 TTGCAAAGAATGGAGACTGTTACAAGAATAAATGCTTGCCCTATTAAAGGGG-CAAACTTTGATT
454 TTGAAAAGAATGGAGACTGTTACAAGAATAAATGCTTGCCCTATT-GAGGGGACAAACTTTGATT
* *
462417 TTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCCAACGAAAACCATCAATATCATTTATCCTA
518 TTAAGGAAAATAGGGCAAAGAAAAGATTTC-GTGCCAAAGAAAACCATCAATATCATTTATCCTA
* * *
462482 ATGAGGAGAATGTGTTTATAGTGCCGT-ATCACAAAATGAATGAAGATCATGACTAGAATCCATC
582 ATGAGGAGAATGTGTTTATAGTGCC-TAATCACAAAATGAATGAAGATCCTTACTAGAATCCATG
* * * *
462546 TTTGTCTCATTTGAGTCACAAACTTAGAATTTACAAAAATTGGTGGGAA-AAAGGCGTTTCTTGC
646 TTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAA-GCGTTTCTTGC
* *
462610 GAAACCAAAGCATCAATAT-GTGTATCCTTATGAGAAGACAATGTTTATGATGCCTAATCCTGAA
710 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCTTGAA
* * *
462674 AAGAAAGAGGATTAGTATAAGTATTCATGTTTGTCTTATTTAACAGACAAACTTTGATTC-ATCA
775 AAGAAAGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * *
462738 TTAAAGATGGAAAGAAAAGCTTTTCTTGCAACAACAAAGCATCAATGTCATGTATCCTAAGGAAG
840 ATAAAGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAGGAAG
* *
462803 TGAATGTGTTTTTGGTTCTTAATTTTGAAAAGAATGGAAACTGTTAC
905 GGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAAACTGTTAC
* * *
462850 AAGAATCAAAGCTTACCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAATGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
462915 GATTTTCGTGCCAAAGATATCCGTCAATATCATTTCTCCTAATGAGGAGAATGAGTTTATAGTGC
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * * *
462980 CTAATCACAAAATGAATGAAGAACCTTACTAGAATCCATGTTTTTCTGATTTAAGGCATGAACA-
131 CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAA-AT
* * * * *
463044 TACACTTTT-TAAAATTGGTGGGAAGAAAGCATTTCTTACGAAACCAAAGCTTCAATATCGTGTA
195 TAGACTTTTAAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTA
* * * *
463108 TCCTTGTGAGAAGGCTAAGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATT
260 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATT
* * * *
463173 CATGTTTGTTTTATTTAAGCA-ACCAACTTTGATTTTATCAATAACAGTGGAAAGAAAAGCTTCT
325 CATGTTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAATAACAATGGAAAGAAAAGCTTCT
* * ** * * * *
463237 CTTGTGACACCAAAGAATCAATGTCACATATCATAATGAAGGGATTATGTTTTTGGTTCTGAATT
389 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATT
* * *
463302 TTAAAAAGAATGGAGACTGTTACAAGAATCATTGCTTGCCCTATTGAGGGGACAAACTTTGATTT
454 TTGAAAAGAATGGAGACTGTTACAAGAATAAATGCTTGCCCTATTGAGGGGACAAACTTTGATTT
* * * * *
463367 TAAGGAAAATAGAGTAAAAAAAAGATTTCCATGCTAAAGAAAACCATCAATATCATTTATCCTAA
519 TAAGGAAAATAGGGCAAAGAAAAGATTT-CGTGCCAAAGAAAACCATCAATATCATTTATCCTAA
* * * * * *
463432 TGTA-GAGAATGTGTTTATAGT-CATTAATCACAAAATGCATAAAGATCCTAACCAAAATCCATG
583 TG-AGGAGAATGTGTTTATAGTGC-CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATG
* * * * *
463495 TATGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAATTTAGTTGGAAGAAAGTGTTTCTTGCG
646 TTTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCG
*** * *
463560 AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGATTTTGTTTACGGTGCCTAATCTTGAAC
711 AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCTTGAAA
* * * *
463625 AGAATG-GGCATTAGTTTGAGCATTCATGTTTGTCTTATTGAAGAGACAAA-TTTGGATTCTATC
776 AGAAAGTGG-ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT-GATTCTATC
* * * * *
463688 AATAACGGTCGAAAGAGAAGCTTCTCTTGCGACACCCAAGCATCAATGTCATGTAACCTAAGGAA
839 AATAAAGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAGGAA
* * * * * * * *
463753 GAGAATGT-TTTTTAGTTCCCAAATTTGAAAAAAAT-AAAGACAGTTAT
904 GGGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAA-ACTGTTAC
* * ** * *
463800 AAGAATCAATGCTGGCCC-ATTGATGGGACCGAGTTTGATTTTAAGGACAATAGGGCAAAGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* **
463864 GATTTTCG-GCCCATAGAAAACCATCAATATCATTTATCCTAATTTGGAGAATGTGTTTATAGTG
66 GATTTTCGTG-CCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* *
463928 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTATCTCATTTGAGGCACGAACT
130 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAAAT
* * * *
463993 TAGACTTTTTAAAAAATTTGTGGGAAGAAAGGGTTTCTTTCGAAACCAAAACATCAATATCGTGT
195 TAGAC-TTTTAAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGT
* * * * *
464058 ATCCTTATGAGAAGACTACGTTTATGATGCCTAATCCTAAAAAGAACGGGGATTAGTGTGAGTAT
259 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTAT
* * * * * * *
464123 TAATGTTTGTTTTATTTAAAAGGCAAATTTTGATTCTATCAATAATAGTGGAAAGAAAAGCTTCT
324 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACAATGGAAAGAAAAGCTTCT
* **
464188 CTTGCGACACCAAAGCATCAATGTCAAGTATCCT-ATCGAAGGGAATGTGTTTTTCATTCTCAAT
389 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-GAAGGGAATGTGTTTTTGGTTCTCAAT
* * * * *
464252 TTTGCAAAGAATGGAGACTGTTACAAGAATAAATGCTTG-CCTACTAAAGGGTCAAACTTTGATT
453 TTTGAAAAGAATGGAGACTGTTACAAGAATAAATGCTTGCCCTATTGAGGGGACAAACTTTGATT
*
464316 TTAAGGAAAATAGGGCAAAGAAAAGATTTCAATGCCAAAGAAAACCATCAATATCATTTATCCTA
518 TTAAGGAAAATAGGGCAAAGAAAAGATTTC-GTGCCAAAGAAAACCATCAATATCATTTATCCTA
* * * * * * *
464381 ATGAGGAAAATGTGTTTATAGTGCCTTATCACAAAGTGATTGGAGATCATTACTAGAATCCATCT
582 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGT
* * * * * * *
464446 TTGCCTCATTTAAGGCACAAACTTAGAATTTACAAAAATTGGTGGGAA-AAAGGCGTTTGTTGCA
647 TTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAA-GCGTTTCTTGCG
* *
464510 AAACCAAAGCATCAATAT-GTGTATCCTTATGAGAAGACTAA-GTTTATGGTGCCTAATCCTAAA
711 AAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAC-AATGTTTATGGTGCCTAATCTTGAA
* * *
464573 AAGAAAGAGGATTAGTGTGAGTACTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
775 AAGAAAGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* * * * * * *
464638 TTAAAGATGGAAAGAAAAACTTCTCTTGCGACAACAAAGCATCAATGTCTTATATCCTAATGAAG
840 ATAAAGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAGGAAG
* * * *
464703 TGAATGTGATTTTGGTTCTTAATTTTGAAAAGAATGGAAAGTGTTAC
905 GGAATGTGTTTTTGGTTCTCAATTTTGAAAAGAATGGAAACTGTTAC
* * *
464750 AAGAATCAAAGCTTACCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAATGAAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
* * * * *
464815 GATTTTCGTGCCAAGGATATCCATCAATATCATTTCTCCTAATGAGGAGAATGAGTTTATAGTGC
66 GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * *
464880 CTAATCACAAAATGAATGAAGAACCTTACTAGAATCC-TAGTTTGTCTGATTTAAGGCACGAACA
131 CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCAT-CTTTGTCTCATTTGAGGCACGAA-A
* * *
464944 -TATACTTTTTAAAAATTGGTGGGAA-AAAGCGTTTCTTGCGAAACCAAAGCTTCAATATCGTGT
194 TTAGACTTTTAAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGT
* * *
465007 ATCCTTGTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGAGGATTAGTATGAGTAT
259 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTAT
* * * * *
465072 TCATGTTTGTTTTATTTAAGCGACCAACTTTGATTTTATCAATAACAGTGGAAAGAAAAGCTTCT
324 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACAATGGAAAGAAAAGCTTCT
* * ** * * *
465137 CTTGTGACACCAAAGAATCAATGTCACATATCATAATAAAGGGAATATGTTTTTGGTTCTCAATT
389 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATT
* * *
465202 TTAAAAAGAATGGAGACTGTTACAAGAATCATTGCTTGCCCTATTGAGGGGACAAACTTTGATTT
454 TTGAAAAGAATGGAGACTGTTACAAGAATAAATGCTTGCCCTATTGAGGGGACAAACTTTGATTT
* * * * *
465267 TAAGGAAAATAGAGTAAAAAAAAGATTTCCATGCTAAAGAAAACCATCAATATCATTTATCCTAA
519 TAAGGAAAATAGGGCAAAGAAAAGATTT-CGTGCCAAAGAAAACCATCAATATCATTTATCCTAA
* * * * * *
465332 TGTGGAGAATGCGTTTATAGT-CACTAATCACAAAATGCATAAAGATCCTTACCAAAATCCATGT
583 TGAGGAGAATGTGTTTATAGTGC-CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGT
* * * * * *
465396 TTATCTCATTTGAGGCACGAACTTAGACTTTTCAAAATTTAGCGGGAAGAAAG-TTTTCTTGTGA
647 TTGTCTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGA
* ** * *
465460 AACCAAAGCATTAATATCGTGTATCCTTATGAGAAGATTATGTTTGTGGTGCCTGATCTTGAAAA
712 AACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCTTGAAAA
* * * * * * *
465525 GGATGTGGATTAGCATTAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATACTATCAGT
777 GAAAGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAT
* * * * * *** **
465590 AACGATGGAAAGAAAAGCTTCTCTTGCGACACTAAAGCATCAATGTCACGCATAGAAACTAAGGG
842 AAAGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAGGAAGGG
* * * *
465655 AATATGTTTTAGGTTCTCAATTTTGAAAAAAATAGG-GACTGTTAC
907 AATGTGTTTTTGGTTCTCAATTTTGAAAAGAAT-GGAAACTGTTAC
* * *
465700 AAGAATCAATGCTTACCCTATTGAGGGGACCAACTTTGGTTTTAA-GAAAACTAGGGCAAAGAAA
1 AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAA
* * * *
465764 AGATTTTCGTGCAAAAG-AAACTATCAATATCATTTATCCCAATGAGGAGAATGTGTTTATAATG
65 AGATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
** * *
465828 CCTAATCACAAAATGAATGAAGATAGTTACTAGAATCCATCTTTGTCTTATTTGAGACAC-AAAC
130 CCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAAA-
* * * * *
465892 TTAGA-ATTTACAAAAATTGGTTGGAA-AAAGCAGTTTCTTGCAAAACCAAAGCATTAATATCAT
194 TTAGACTTTTA-AAAAATTGGTGGGAAGAAAGC-GTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * *
465955 GTATGCTTATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGCATGAGT
257 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGT
* * * * * *
466020 ATTTAAGTTGGTCTTATTTAGGAGACAAACTTTGCTAT-TATCACTAA-AATGGAAAGAAAAGCT
322 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAATAACAATGGAAAGAAAAGCT
* * * *
466083 TCTCTTGCGACAACAAAGCATCAATGTCATCTATCCTAAAGAAGTGAATGTGTTTTTGGTTCTCA
386 TCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCA
** * * *
466148 ATTTTGGCAAGAATAGAGACTGTTACAAGAATCAAA-GCATGCCCTATTGAGGGGAGAAACTTTG
451 ATTTTGAAAAGAATGGAGACTGTTACAAGAAT-AAATGCTTGCCCTATTGAGGGGACAAACTTTG
* ** * *
466212 ATTTTAAGGAAAATAAGGCAATCAAAAGATTTTCGTGCAAAAAAAAACCATCAATATCATTTATC
515 ATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCGTGCCAAAGAAAACCATCAATATCATTTATC
* * *
466277 CTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTCCTAGAATCTA
579 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCA
* * * *
466342 T-TTTGTCTCATTCGAGGCACGAACTTAGGCTTTTTC-AAAATTGGGGGGGGGGGAA-AAAGCAT
644 TGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTTCAAAAATT-----GGTGGGAAGAAAGCGT
* * * * *
466404 TTCTTACGAAACCAAAGCATCAATATCGTGTATCCTTATAAGAAGACAGTGTTAATGATGCCTAA
703 TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAATGTTTATGGTGCCTAA
* * *
466469 TTTTGAAAA-AAA-TGGA--A-T-TG-GTA-TGA-G--T-ACTTATTTAAGAGACAAACTTTGAT
768 TCTTGAAAAGAAAGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* ** *
466522 TCTATCAATAATGGTGCG-AAGAAAAGC-T-TCTTGCGACACCAAAGCATCAATGTCGCGTATAC
833 TCTATCAATAAAGGTG-GAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCC
* ** * *
466584 AAAATAAGGGAATGTGTTTTTGCTTCTCGATTTTGAATAA-AATGGAGAA-TGTTAC
897 TAAGGAAGGGAATGTGTTTTTGGTTCTCAATTTTGAA-AAGAATGGA-AACTGTTAC
* * *
466639 AAGAATCATTGCTTGCCCTATAGAGTGGG-CAAACTTTGATTTTAAGGAAATTAGGGCAAAGAAA
1 AAGAATCAATGCTTGCCCTATTGAG-GGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * * *
466703 AGATTTTTGTGCAAAAG-AAACTATCAATATCATTTATCGC-AATGAGGAGAATGTGTTTATAAT
65 AGATTTTCGTGCCAAAGAAAACCATCAATATCATTTATC-CTAATGAGGAGAATGTGTTTATAGT
** * *
466766 GCCTAATCACAAAATGAATGAAGATAGTTACTAGAATCCATCTTTGTCTTATTTGAGACAC-AAA
129 GCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAAA
* * * * * *
466830 CTTAGA-ATTTACAAAAATTGGTTGGAA-AAAGCAATTTCTTGCAAAACCAAAGCATTAATATCA
194 -TTAGACTTTTA-AAAAATTGGTGGGAAGAAAGC-GTTTCTTGCGAAACCAAAGCATCAATATCG
* * * *
466893 TGTATGCTTATGAGAAGGCTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGCATGAG
256 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * * *
466958 TATTCAAGTTGGTCTTATTTAAGAGACAAACTTTGCTAT-TATCACTAA-AATGGAAAGAAAAGC
321 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAATAACAATGGAAAGAAAAGC
* * *
467021 TTCTCTTGCGACAACAAAGCATCAATGTCATGTATCCTAAAGAAGTGAATGTGTTTTTGGTTCTC
385 TTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTC
** * * *
467086 AATTTTGGCAAGAATAGAGACTGTTACAAGAATCAAA-GCATGCCCTATTGAGGGGAGAAACTTT
450 AATTTTGAAAAGAATGGAGACTGTTACAAGAAT-AAATGCTTGCCCTATTGAGGGGACAAACTTT
* ** *
467150 GATTTTAAGGAAAATAAGGCAATCAAAAGATTTCCGTGCCAAAAAAAACCATCAATATCATTTAT
514 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTT-CGTGCCAAAGAAAACCATCAATATCATTTAT
* *
467215 CCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCT
578 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCC
* * *
467280 AT-TTTGTCTCATTCGAGGCACGAACTTAGGCTTTTTC-AAAATTGGGGGGGAAGAAAGCGTTTC
643 ATGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTTCAAAAATT-GGTGGGAAGAAAGCGTTTC
* * * * * *
467343 TTACGAAACCAAAGCATCAATATCGTGTATCCTTATAAGAAGACAGTGTTAATGATGCCTAATTT
706 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCT
* *
467408 TGAAAA-AAA-TGGA--A-T-TG-GTA-TGA-G--T-ACTTATTTAAGAGACAAACTTTGATTCT
771 TGAAAAGAAAGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* ** * *
467461 ATCAATAATGGTGCG-AAGAAAAGC-T-TCTTGCGACACCAAAGCATCAATGTCGCGTATACAAA
836 ATCAATAAAGGTG-GAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
** * * *
467523 ATAAGGGAATGTGTTTTTGCTTCTCGATTTTGAATAA-AGTGGAGAA-TGTTAC
900 GGAAGGGAATGTGTTTTTGGTTCTCAATTTTGAA-AAGAATGGA-AACTGTTAC
* * *
467575 AAGAATCATTGCTTGCCCTATAGAGTGGG-CAAACTTTGATTTTAAGGAAATTAGGGCAAAGAAA
1 AAGAATCAATGCTTGCCCTATTGAG-GGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * *
467639 AGATTTTTGTGCAAAAG-AAACTATCAATATCATTTATCC
65 AGATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCC
467678 CAAGATTAGG
Statistics
Matches: 6642, Mismatches: 909, Indels: 265
0.85 0.12 0.03
Matches are distributed among these distances:
935 10 0.00
936 342 0.05
938 5 0.00
939 727 0.11
940 12 0.00
941 45 0.01
942 2 0.00
945 2 0.00
946 4 0.00
947 140 0.02
948 721 0.11
949 1745 0.26
950 1549 0.23
951 1176 0.18
952 93 0.01
953 69 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (951 bp):
AAGAATCAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
GATTTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
CTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATCTTTGTCTCATTTGAGGCACGAAATT
AGACTTTTAAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCGTGTAT
CCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC
ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACAATGGAAAGAAAAGCTTCTCT
TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATTTT
GAAAAGAATGGAGACTGTTACAAGAATAAATGCTTGCCCTATTGAGGGGACAAACTTTGATTTTA
AGGAAAATAGGGCAAAGAAAAGATTTCGTGCCAAAGAAAACCATCAATATCATTTATCCTAATGA
GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
CTCATTTGAGGCACGAACTTAGACTTTTCAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
AAAGCATCAATATCGTGTATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCTTGAAAAGAAA
GTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAAG
GTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAGGAAGGGAATG
TGTTTTTGGTTCTCAATTTTGAAAAGAATGGAAACTGTTAC
Found at i:468575 original size:476 final size:476
Alignment explanation
Indices: 467681--489133 Score: 11189
Period size: 476 Copynumber: 44.4 Consensus size: 476
467671 TTTATCCCAA
* * * *
467681 GATTAGGCACCATCAACATAATTTTCTCATAAGGTTACACGATATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * *
467746 AAACACTTTCTTCCCACCAAATTTTGAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATAGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * *
467811 TTCTGGTAAGGGTCTTTATTCATTTTGTGATTAGTG-ACTATAAACACATTCTCCACATTACGAT
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGAT
* * * * *
467875 AAACGATATTGATAGTTTTCTTTGGCGCGAAAATCTTTTCTTTACCCCATTTTCCTTAAAATCAA
195 AAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * ** * *
467940 AGTTTTTCCCCTCCATAGGGCAATCAATGATTCTTGTAATAGTCTCCATTCTTTTTAAAATTGAG
260 AGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAG
**** ** * *
468005 AACCAAAAGTTTATTCCCTTCATTAGGATATGTGACGTTGATGCTTTGGTGTCACAAGAGAAGCT
325 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCT
* * * * *
468070 TTTCTTTCCATCGTTATTGATAAAATCAAAGTTGGTCTCTTAAATAAAACAAACATAAATACTCA
390 TTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* *
468135 TACTAATCCCTATTTTTTTCAA
455 TACTAATCCCCATTTTTTTCAG
* * * * * * *
468157 GATTAGGCACCATAAACATAGCCTTCTCACAAGGAAACATGATATTGAAGCTTTGGCTTCACAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* ** * * * * *
468222 AAACACTTTCTTCGAACCAATTTTTGAAAAGTATAGGTTCGTGCCTTAAATCAGACGAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
468287 TTCTAGTAAGGATATTCATTCATTTTGTGATTAGGCACTATAAACAGATTCTCCTCATTAAGG-G
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT-AGGAT
* *
468351 AAATGATATTGATGGGTATCTTTGGCACGAAAATCTTTTCATTT-CCCTATTTTCCTTAAAATCA
195 AAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTC-TTTGCCCTATTTTCCTTAAAATCA
* * * *
468415 AAGTTTGTCCCCTCAATAGGGTAAGCTTTGATTCTTGCAACAGTCTCCATTCTTTTCAAAACTAA
259 AAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA
* * * *
468480 GAACCAAAAACACATTCACTTCATTAGGATACATGACATTGATGCTTTGTTGTCGTAAGAGAAAC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * * * * *
468545 TTTTCATTCCATCTTTAATGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACAAGAATACTC
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
** *
468610 ACGCTAATCCCC-TTTCTTTTTAG
454 ATACTAATCCCCATTT-TTTTCAG
*
468633 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC-ATCTTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * ** *
468697 AAACGCCTTT-TTCCCACCATTTTTTGTAAAGTCCAAGTTTGTGCCTTGAATGAGACAAAGATGG
66 AAACG-CTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* *
468761 ATTCTAGTAATGATCTTCATTCGTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
130 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* *
468826 AAATGATGTTGATGGTTTTCTTTGGCATTGAAATAAT-TTTT-TTT-CCCTATTTTCCTTAAAAT
195 AAATGATATTGATGGTTTTCTTTGGCA-CG-AA-AATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * *
468888 CAAAGTTTGTCCCTTTAATAGGGCAAGCATTT-ATTCTTGTAACAGTTTCCATTCTTTTCAAAAT
257 CAAAGTTTGTCCCCTCAATAGGGCAAGC-TTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAAT
** * *
468952 TGAGAATGAAAAACACATTCCCTTCATTAGGATATATGGCATTGATGCTTTGGTGTCGCAAGAGA
321 TGAGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * *
469017 AGTTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGCCTCTTAAATAA-ACAAACATGAGTA
386 AGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* *
469081 CTCATACTAATCCCCGTTCTTTTCAG
451 CTCATACTAATCCCCATTTTTTTCAG
* ** * * *
469107 GATTAGGCATCATAAACGCAGTCTTCTCATAAGGATACACGATATAGATGTTTTGGTTTCGAAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * ** *
469172 AAATGCTTTCTTCACACCAA-TTTTAAAAAGTCTAAGTTCGTGCCTCAAATGGGGTAAAGATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * * *
469236 TTCTAGTAAAGATCTTCATTCATTTTGGGATTAGGCACTATAAACACATCCTACACATTAGGAAA
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* * *
469301 AATGATATTGATGGATATCTTTGGCACGAAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAA
196 AATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* *
469366 GTTTGTCCCCTCAATAGGGCGAGCATTT-ATTCTTGTAACAATCTCCATTCTTTTCAAAATTGAG
261 GTTTGTCCCCTCAATAGGGCAAGC-TTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAG
*
469430 AACCAAAAACACATT-CCTCTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAGAAGC
325 AACCAAAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * * * *
469494 TTTTCTTTCCACCATTGTTGATAGAATCAAAGTCTGTCTCTTAAATAAGACAAACAAGAATGCTC
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* * * *
469559 AAATTAATCCCCATTCTTTTCAA
454 ATACTAATCCCCATTTTTTTCAG
* * * *
469582 GATTAGGCACCATAAACATAATCTTCTCATAAAGATACACAATATTGATGCTTTGGTTTCACAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * *
469647 AAATGCTTTCTTCCCACCAAATTTTGAAAAGTCTAAGTTCGTGCCTCGAATGCGTCAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
** *
469712 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGTG-ACTATAAACACATTCTCGACAATAGGAT
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGAT
*
469776 AAATGATATTGATGTTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
195 AAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* ** * *
469841 AGTTTGTCCACTCAATAGGGCAAGCAATGATTCTTGTAACATTCTCCATT-TTCTTCAAAATCGA
260 AGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTT-TTCAAAATTGA
* * * * ** * *
469905 GAACCAAAAACACATTTCCTTAATTTGTATACGCGACATAGATGCTTTGGTTTCGC-A-AGAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * * * * * *
469968 TTTTCTTCCCACCATTATTGACATAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAAAACTA
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* * *
470033 ATACCAAT-TCTATTTTTTTCA-
454 ATACTAATCCCCATTTTTTTCAG
* * * * *
470054 AATTTAGGCATCATAAACATTGTCTTCTTATAAGGATACACGATATTGATGCTTTGGTTTCGGAA
1 GA-TTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * * *
470119 GAAATGCTTTCTTCCCCCCAATTTTTAAAAAGTCTAAGTTCATGCCTCAAATGAGACAAA-ATGG
65 GAAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
*
470183 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTAT-AACACATTCTCCTCACTCA-GA
130 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA-TTAGGA
* * * * * **
470246 TACATGACATTGATAGTTTTTTTTGGCACGAAAATCTTTTCATTGCATTATTTTCCTTAAAATCA
194 TAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * * * * *
470311 AAGTGTCTCCCATCAATAGAGCATGCTTTGATTCTTGTAATACTTTCCATTCTTTTCAAAATTGA
259 AAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA
** * * * *
470376 GAACCAAAAATGCATTCCCTCCATTAGGATAAATGACATTGATGATTTGGGGTCGCAAGAGAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * * *
470441 TTTTCTTTCCATCTTTAATGATAGAATCAAGGTTTGTCTCTTAAATAAGACAAACATGAATACTC
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
*
470506 ATACTAATCCCC-TTTCTTTTTAG
454 ATACTAATCCCCATTT-TTTTCAG
* * * *
470529 GATCAGGCACCATAAACATTGTCTTCTTATAAGGATACATGATATT-ATTGCTTTGGTTTCGCAA
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA-TGCTTTGGTTTCGCAA
* * * * * * * *
470593 GAAATGCTTTTTTCCCACTAATTTTTGTAAATTCTAAGTTTGTGCCTTAAATGAGTCAAACATGG
65 GAAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* **
470658 ATTCTAGT-AGTGATGTTCATTCATTTTGTGATTAGGCACTACGAACACATTCTCCTCATTAGGA
130 ATTCTAGTAAG-GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * * *
470722 TAAATGATGTTGCTGGTTTTCTTTAGCATTG-AAATCTTTTATTTGCCCTATTTTCCTTAAAATC
194 TAAATGATATTGATGGTTTTCTTTGGCA-CGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* *
470786 AAAGTTTGTCCCCTCAATAGGGCGAGCATTT-ATTCTTGTAACAATCTCCATTCTTTTCAAAATT
258 AAAGTTTGTCCCCTCAATAGGGCAAGC-TTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATT
*
470850 GAGAACCAAAAACACATT-CCTATCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAGA
322 GAGAACCAAAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* *
470914 AGCTTTTCTTTCCACCGTTATTGATAGAATTAGAGTTTGTCTCTTAAATAAGACAAACATGAATA
386 AGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
* * * *
470979 CTTATAGTAA-CCCCAATTCTTTTGAG
451 CTCATACTAATCCCC-ATTTTTTTCAG
*
471005 GATTAAGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * *
471070 AAACGTTTTCTTCCCATCAATTTTTAAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACAGGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * ** * *
471135 TTCTGGTAAGGATGTTCATTCATTTAATGGTTAGGCACTATAAAAACATTCTCCTCATTAGGATA
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* *
471200 AATGACATTGATGGTTTTTTTTGGCACG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
196 AATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* * * * *
471264 GTTTATCCCCTAAATAGGGTAAGCTTTGATTCTTGCAACAGTCTCCATTCTTTTCAAACCTTCGA
261 GTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAA-ATT-GA
**** ** * * *
471329 TTCTTGTAA-CAGTCTC-CATTCTTTTCAAAATTGAGAACCAAAAACATATTCACTTCATTAGGA
324 -----G-AACCAAAAACACATTCCCTTC---ATT-AG-----GATAC--A-TGA---CATT--GA
* * * * * * * *
471392 TACATGATATTGT-TACTTTGTTGTCGCAAGAGAAGTTTTTCTTTCCATCTTTAATAATAGAGTC
366 TGC-T--T-TGGTGT-C---------GCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATC
* *
471456 AAAGTTTGTCTGTTAAATAAGACAAACATGAATACTCATACTAATCCCCTTTTTTTTCAG
417 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTTTTTTCAG
*
471516 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGTTGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * * * *
471581 AAATGCCTTT-TTCCCATCAATTTTTGTAAATTCTAAGTTTGTGCCTCAAATTAGACAAAGATGG
66 AAACG-CTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * * *
471645 ATTCTAGT-AGTGATCTTCATTTATTTTGTGATTAGGCACTGTAAACACGTTCTCCTTATTAGGA
130 ATTCTAGTAAG-GATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* ** * *
471709 TAAATCATATTGATGGTTTTCTTTGGCTTGAAAATCTTTTATTTGCCCTATTTTCCCTAAAATCA
194 TAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * * *
471774 AAGTTTGTCCCCTAAATAGGGCAAGCACTT-ATTCTTCTAATAGTCTCCCTTCTTTTCCAAATTG
259 AAGTTTGTCCCCTCAATAGGGCAAGC-TTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTG
* * * * ** * *
471838 AGAACTAGAAACGCATTCCCGTCATTACAATACATAACATTGATGCTTTGATGTCGCAAGAGAAG
323 AGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAG
* * * * *
471903 CTTTTCTATCCATCATTATTGATAGAATCAAAGTTTGTCTCTTATATAAGACAAACATTAATACT
388 CTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* * * *
471968 AATGCTAATCCCCATTCTTTTCAA
453 CATACTAATCCCCATTTTTTTCAG
* * * * * * *
471992 GATTACGCACCATCAACATAATCATCTCATAAGGATACGCGATATTGATGCTTTGGATACGC--G
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* ** * * **** * *
472055 ATA----TTGAT---GCTAA----TCCCCAGTCTAAGTCCGTGCCACAAATGAGACAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
472109 TTCGAGTAAGGATCTGT-ATTCATTTTGTGATTAGTG-ACTATAAAGACATTCTCCACATTAGGA
131 TTCTAGTAAGGATCT-TCATTCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGA
* * * * *
472172 TAAATGATATTGATCGTTTTCTTTGGCAGGGAAATCTTTTCTTTACCCCATTTTCCTTAAAATCA
194 TAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * ** * * * *
472237 AAGTTTGTCCCTTCAATATGGCAAGCAATGATTCTTGTAACTGTCTCCCTTTTTTTTAAAATTGA
259 AAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA
* ** *
472302 GAACCAAAAACATATTCCCTTCATTAGGATACGGGACATTGATGCTTTGGTGTCACAAGAGAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * * *
472367 TTTTCTTTCCACTGTTATTGATAAAATCAAAGTTGGTCTCTTAAATAAAACAAACATGAATACTC
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
*
472432 ATACTAATCCCCATTTTTTTCAA
454 ATACTAATCCCCATTTTTTTCAG
* * * * * * *
472455 GATTAGGCACCGTAAACATAGCCTTTTCACAAGGAAACACGATATTGAAGCTTTGGTTTCACAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * * * * * *
472520 AAACGCTTTCTTCCTATCAATTTTTAAAAAGTATAGGTTTGTGCCTTAAATCAGACAAACATGGG
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * *
472585 TTCAAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTAAAAACACATTCTCCTTATTAGGAGA
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* * * *
472650 AATGATATTGATGGATATCTTTGGCATGAAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAA
196 AATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* * *
472715 GTTTGTCCCCTCAATAGGGTAAGCTTTGATTCTTGTAACAGTCTCCATTCTTCTCAAAACT-AGG
261 GTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA-G
* * *
472779 AACCAAAAACACATTCACTTCATTAGGATACATGACATTGATGCTTTGTTGTCGTAAGAGAAGCT
325 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCT
** * * *
472844 TTTCTTTCCGTCTTTAATGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATACTCA
390 TTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* * *
472909 CACTAATCCGC-TTTCTTTTTAG
455 TACTAATCCCCATTT-TTTTCAG
* * *
472931 GATTAGGCACCACAAACATAGTCTTCTCATAAGGATATAC-ATATTGATGCTTCGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * *
472995 AAACGCCTTT-TTCCCA-CTATTTTTGTAAATTCTAAGTTTGTGCCTCAAATGAGACAAAGATGG
66 AAACG-CTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* *
473058 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGAT
130 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
*
473123 AAATGATATTGATGGTTTTCTTTGGCATTG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
195 AAATGATATTGATGGTTTTCTTTGGCA-CGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
** *
473187 AAGTTTGTCCTTTTAATAGGGCAAGCATTT-ATTCTTGTAACAGTCTCCATTCTTTTCAAAATTG
259 AAGTTTGTCCCCTCAATAGGGCAAGC-TTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTG
** * * *
473251 AGAATGAAAAACAAATTCCCTTCTTTAGGATATATGACATTGATGCTTTGGTGTCGCAAGAGAAG
323 AGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAG
* * **
473316 CTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGCCTCTTAAATAAAATGAACATGAATACT
388 CTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* *
473381 CATACTAATCCCCGTTCTTTTCAG
453 CATACTAATCCCCATTTTTTTCAG
* * * * * *
473405 GATTAGGCATCATAAACATAGTCTTCTCATAAGGATACAAGATATTGATGTTTTCGTCTCGAAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * *
473470 AAACGCTTTATTCCCATCAA-TTTTAAAAAGTCTAAGTTCGTGCCTCAAATGAGATAAAGATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * * **
473534 ATCTAGTAAGGATCTTCATTCATTTTGTGATGAGGCAGTATAAACACATCCTACAAATTAGGATA
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* ** * * * *
473599 AATGATGTTGATGGTTTTCTTTAGG-TTGAAAATCTTTTCTTTACCTTGTTGTCCTTAAAATCAA
196 AATGATATTGATGGTTTTCTTT-GGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
**** * * * * * * * * * *
473663 ACACGGTCCCGTTAAT-GGGCCAGCATTGATTCTTATAACGGTCTTCATTTTTTTCAAAATTAAT
260 AGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAG
* * * * * * *
473727 AACTAAAAACACATTCTCTTCGTTAGGTTACATGGCATTGGTGCCTTGGTGTCGCAAGAGAAGCT
325 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCT
* * * * *
473792 TTTCTTTCCACCGTTATTAATAGAATCAAAGTTTGTCTCTTCAGTAAGACAAACAAGAATGCTCA
390 TTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* * *
473857 AACTAATCCCCATTCTTTTCAA
455 TACTAATCCCCATTTTTTTCAG
* * *
473879 GATTAGTCACCATAAACATAATCTTCTCATAAAGATACACGATATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * *
473944 AAACGGTTTCTTCCCACCAAATTTTGAAAAGTTTAAGTTCGTGCCTCAAATGAGACAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* *
474009 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGTG-ACTATAAACATATTCTCCACATTAGGAT
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGAT
* * * *
474073 AAATGATATTGATGGTTTTCTTTGGCGCGGAAATCTTTTCTTTACCCTATTTTCCTTGAAATCAA
195 AAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* ** * * *
474138 AGTTTGTCCACTCAATAGGGCAAGCAATGATTCTTGTAGCATTCTCCATTCTTTTCAAAATCGAG
260 AGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAG
** * * * **
474203 AACCAAAAATGCATTCCCTTAATTTGTATACGCGACATTGATGCTTTGGTGTCGC-A-AGAAGCT
325 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCT
* * *
474266 TTTCTTCCCACCGTTATTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAATATGAATACTCA
390 TTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* * * *
474331 TACCAAT-TCTA-TTTTTTCAA
455 TACTAATCCCCATTTTTTTCAG
* * * * *
474351 AATTAGCCATCATAAACATTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* *
474416 AAACGCTTTCTTTCCC-CCAATTTTTAAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA-ATGA
66 AAACGCTTTC-TTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * *
474479 ATTAC-AGTGAGGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTCTCCTTATTAGGA
130 ATT-CTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* ** * *
474543 TAAATGATATTGATGGCTTTCTTTGGCATAAAAAGCTTTTCTTTACCCTATTTTCCTTAAAATCA
194 TAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * ** * * ** *
474608 AAG-TTGATCCCTTCAATAGGGTAGGCACTGATTCTCGTAACAGTCAACTTTTTTTTTCAAAATT
259 AAGTTTG-TCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTC-TCCATTCTTTTCAAAATT
* * * * * ** * *
474672 GAGAACCAAAAGCACACTCCCTTAATTTGTATATGTGACATTGATGCTTTGGTGTCGTAAGAGAT
322 GAGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAA
* * * * *
474737 GTTTTTCTTCCCACCGTTATTGATAGAATCAAAGCTTGTCTTTTAAATAAGATAAACATGAATAC
387 GCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* * *
474802 TCATACTAATTCCCATTCTTTTCTG
452 TCATACTAATCCCCATTTTTTTCAG
474827 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * ** * * *
474892 AAACACTTTTTTCCCACCAAAATTTGGAAAGTCCAAGTGT-GTGCCTCAAATGAGAGAAACATGG
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGT-TCGTGCCTCAAATGAGACAAACATGG
* * * *
474956 ATTCTAGTAAGAATCTTCATTTATTTTGTGATTAGTG-ACTATAAATACATTCTCCACATTAGGA
130 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGA
* *
475020 TAAATGACATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCA
194 TAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * * ** * * *
475085 AAGTTGGTCCCTTAAATAGGGTAAGCAATGATTCTTGTAACAGTCTCTATTTTTTTCAAAATTGG
259 AAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA
* * * *
475150 GAACCAAAAACACATTCCTTTCATTAAGATACATGATAATGATGCTTTGGTGT--CATAGAGAAG
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA-AGAGAAG
* * * * *
475213 CTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTATCTCTCAATTGAGAAAAACATGAATACT
388 CTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* *
475278 TATACTAATCCCCATTCTTTGT-AG
453 CATACTAATCCCCATT-TTTTTCAG
* ** * * *
475302 GACTAGGCGTCATAAACATTA-TCTTGTCATAAGGATACACAATGTTGATGCTTTGGTTTCGCAA
1 GATTAGGCACCATAAACA-TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* * *
475366 GAAACGCTTTTTTCCGACCAATTTTT-ACAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
65 GAAACGCTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* **
475430 GATTCTAGTACGGAT-TCTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAACAGG
129 GATTCTAGTAAGGATCT-TCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * * * *
475494 ATAAATGATATTAATGGCTTTCTTTGGCATGAAAATCTTTTCATTGCCTTATTTTCCTTAAAATC
193 ATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
*
475559 AAAGTTTGTCCCC-CTAATAGGGCAAGCCTTT-ATTCTTGTAAAAGTCTCCATTCTTTTCAAAAT
258 AAAGTTTGTCCCCTC-AATAGGGCAAG-CTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAAT
* * * * *
475622 TGAGAACCAAAAACACATTCCCTTCACTAGGACACATGCCATTGATGCTTTGATG-CTGCAATAG
321 TGAGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAG
* * * * * *
475686 AAGCTTTTCTTTCCACCATTATTAAATAGAATAAAAGTTTGTCTCCTAAATAAGATAAACATTAA
385 AAGCTTTTCTTTCCACCGTTATT-GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
*
475751 TACAT-ATACTAATCCCCATTCTTTTCAG
449 TAC-TCATACTAATCCCCATTTTTTTCAG
* ** * * * **** **
475779 GATTACGCACCATAAACATAG---AAT-A-AAGTATA-A-G-T-TCG-TGCCTCAAATGAGACAA
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCG-CAA
* * ** *** *** * * * * * * * * * *
475834 -ACATGGATTC-TAGTAAGGA-TCTT---CA-T-TCATTTTGTG-AT-TAGTGACTATAAACAT-
65 GAAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGA-GACAAACATG
* * * * *
475888 -ATTCT-GCTTATTAGGATAAATGACATTGATGGTTT-TCATT-GGCAC-A-AAA-ATCTTTCCA
129 GATTCTAG--TA--AGGAT--CT-TCATTCAT--TTTGTGATTAGGCACTATAAACA-CATT-C-
* **** * * ** * * * * * **
475946 TAGCCTTATTTTCCTTAAAATCAAAGTT--T-GTCCCCTCTATGGGTAAGCATTTATTCCTGTAA
182 T--CCTCA-TTAGGAT-AAATGATA-TTGATGGT--TTTCT-TTGGCACG-A--AAAT-CT-TTT
* * * * * ** * * * * * *
476008 CAATCT-CCATTCTTTTCAAAATTAAGAACCAAAAGCACAT-TCGCTTCATTAGGATACATGACA
234 C--TTTGCC-CTATTTTC---CTTAA-AATC-AAAG--TTTGTCCCCTCAATAGG--GCAAG-CT
* * ** ** * * ***
476071 TTGATGCTTTGGTGTCGCAAGAGAAGT-TTTTCTTTCCACCATTATTGATAGAACC--AAA-GTT
286 TTGAT--TCT--TGT---AACAG-TCTCCATTCTTTTCA--A-AATTG--AGAACCAAAAACACA
* * * * * * ** * * *
476132 TGTCTCTTAAATAAGAGAAACATGAATACTTATCATAATCCCAACTCGTTTCAGAATTAGGCACC
338 T-TCCCTT-CATTAG-GATACATG---AC--AT--TGAT-GC-TTTGGTGTC-GCA--A-G-A--
* ** * * ** * * *** **
476197 GTAAACATAGTCTTTTCA----AAAGGATA-AATGATA--TTGATGCT-TTGGTTTTG-C--A-A
384 G-AAGC-TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTG-T-CTCTTAAATAAGACAAACA
* * *
476250 -GAA-ACGT-TTTCT--TCCCACCA-ATTTTT-A-
445 TGAATAC-TCATACTAAT-CC-CCATTTTTTTCAG
* * * * * * * * * * **
476277 -A-AAAG--TC-TAAGTTCAT-G-C--CTCA-AATGAGACA-AACATGGATTCTTCTGAGGATCT
1 GATTAGGCACCATAA--ACATAGTCTTCTCATAAGGATACACGATATTGATGCTT-TG-GTTTC-
* ** ** * **** * * * * * * **
476331 TC---ATTCATTTTGTGATTAGGC-A-TTATAAACACATTCT--CTTCATTAGGAT-AAAT--GA
61 GCAAGAAACGCTTTCTTCCCA-CCAATTTTTGAA-A-AGTCTAAGTTC-GT-GCCTCAAATGAGA
* *** * * * ** *** ** *
476386 TATTGATGGTTTTCTTTGGCACGAAAATCTT--TTCATTGCCCT-ATT-TTC-CT-TAAAATCAA
121 CAAACATGG-ATTC--TAGTA--AGGATCTTCATTCATT-TTGTGATTAGGCACTAT-AAA-CAC
* * * * * ** * **** * * * * ***
476445 AGTTTGTCCCCTTAATAGGGT-AA-G-TTTTGATTCTTGTAACAGTCTC--CATTCTTTTCAAAG
178 A---T-TCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTG
** * * * ** ** * * *
476505 CTTTGATTTT--TGTAACAGTCACTACTCTTGT---CAAAATTGAGAACCAAAAACACATTCACT
239 CCCT-ATTTTCCT-TAA-AATCA-AAGT-TTGTCCCCTCAA-T-AG-GGC---AA-GCTTTGA-T
* * ** * ** * **** * *
476565 TCATTAGGATACATGACATTGATGCTTTGTTGTCGCAA--GAGAAGC---TTTTCTTTCCATCTC
291 TC-TT-GTA-ACA-GTC-TCCAT--TCT-TT-TCAAAATTGAGAACCAAAAACACATTCCCT-TC
* * * * * ** * ** * * * * *
476625 -TAATGATAGAATCAAAGTT--TGTCTTTTAAATAAGACAAAAGTGAATACTCATACTAATCCCT
346 ATTAGGATA-CATGACA-TTGATG-C-TTT-GGT--GTCGCAAGAGAA-GCT-TTTCT--TTCC-
* * * * * * *
476687 ATTC-TT-TTCAGGATTAGGCACCTAAA-TATAG-C-CTTATCATAAG-GAAACACGATATTGAT
399 A-CCGTTATT---GA-TA-GAATC-AAAGT-TTGTCTCTTA-AATAAGACAAACATGA-A-T-A-
** * * * ** *
476746 GCTTTGGTTTTCCAATAAACGCC-TTTTTCCCACC
451 -C-----TCAT--ACTAATCCCCATTTTTTTCA-G
* ** * ** * * * * *
476780 AATTTTTGTA--AT-TTCTTAGTTTGTGCCTCA-AATGAGACA--A-A--GA-----TGGATT--
1 GA-TTAGGCACCATAAACATAGTCT-T--CTCATAAGGATACACGATATTGATGCTTTGGTTTCG
* * * * * ** * * * *
476829 CTAGTAATG--ATCTT--CATTC-ATTTTGTGATTGGGCACTATAAACACATTC-T-CCTCATTA
62 CAAGAAACGCTTTCTTCCCA-CCAATTTT-TGA----AAAGTCT--A-A-GTTCGTGCCTCA-AA
* * * * * * * * **
476887 GGATA-AATGATATTGATAGTCTCTTTTGCATGAA-AATCTT--TTC-TTTTCTCTATT-TTC-C
116 TGAGACAA--ACA-TG-GA-T-TC--TAG--T-AAGGATCTTCATTCATTTTGT-GATTAGGCAC
* * * ** * * **
476945 T-TAAAACCAAAGTTGGTCCTCTGAATAAGGCAGGCATTGATTCTTGTAACAGTCTCCATT-TTT
169 TAT-AAA-CACA-TT-CTCCTC---ATTAGG-A-TAAATGA-TATTG--ATGGT-T---TTCTTT
** * * * *** * * * * ** * **
477008 TTCAAAATTGAGAACCTAAAACATATT-CCCTTAATTTGTATTCGTGACATTGATGCTTTGGTGT
218 GGC---A-CGAAAATCT-TTTC-T-TTGCCC-T-A-TT-T-TCCTTAAAATCAAAG-TTT-GTCC
* * ** * * ** *
477072 CGT--A-AGAG-AAGCTTTTTTTTCCACCGTTATTAATAGAATCAAAGTTTGTCTCTTAAATAAG
269 CCTCAATAGGGCAAGC-TTTGATT----C-TT-GTAACAGTCTC-CA---T-TCT-TT---T---
* * ** * * *
477133 ACAAACA-TGA-ATACTAATGCTAATCCACATTCTTTTCAAGATTAGGCA-GCATAAACA-TAAT
315 -CAAA-ATTGAGA-ACCAA----AA-ACACATTCCCTTC---ATTAGG-ATACAT-GACATTGAT
** ** * * * * * * * * *** *
477194 -CTTCTCAT-AAGCATACACGATATTGATGCTTTTGTTTTGCAAGAAATGCTTTCTTCCCACCAA
367 GCTT-TGGTGTCGCA-AGA-GA-A--GCT-TTTC---TTT-C----CA-CCGTTATTGATA-GAA
* * * * *** **
477257 TTTTTAAAAAGTATATGTTCGTGCCTTAAATCAGACAAACATGGATTCT-AGTAAGGATCTTCAT
415 ----T-CAAAGT-T-TG-TC-T--CTTAAATAAGACAAACATGAATACTCA-TACTAATCCCCAT
*
477321 TCATTTT--G
468 T-TTTTTCAG
* * * * * * * * * ** * *
477329 TGATTAGTG-ACTATAAACACATTCTCCACA-ATAGGTTAAATGATATTGATGGTTTTCTTTGGG
1 -GATTAG-GCACCATAAACATAGTCTTCTCATA-AGGATACACGATATTGATGCTTTGGTTTCGC
* ** * * * * * *
477392 AGAGAAATC-TTTTCTTTAC-CCTATTTTCCTTAAAA-TCAAAGTTTGTCCCCTC-AAT-AGGGC
63 A-AGAAA-CGCTTTCTTCCCACCAATTTT--TGAAAAGTCTAAGTTCGT-GCCTCAAATGA-GAC
* * * * * * *** * * *
477452 AAGCAAT-GATTATTGTAA-CAGTCTCCATTCTTTTTAAAATT-GAGAACCA-AAA-ACATACT-
122 AAAC-ATGGATTCTAGTAAGGA-TCTTCATTCATTTTGTGATTAG-GCACTATAAACACATTCTC
* ** * * ** * ** * * * * * *
477511 -TTATTAGGATACGTGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTGTTTCCACCGT-TAT
184 CTCATTAGGATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGC-CC-TATTT
** * * * * * * * * * ** *
477574 T-GATAAAATGAAAGTTTGTCTCGTAAATAAGACAAAC-ATGAATACTCAT-ACTAAT-TCCCAT
247 TCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCTTTG-ATTCTTGTAAC-AGTCT-CCAT
** * * * * * * * * * *
477635 TCTTTTCAGGATT-AGGCACCATAGACATA-GCCTTCTCATAAAGATACATGATATTGACGCTTT
309 TCTTTTCAAAATTGA-GAACCAAAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTT
* * * * * ** *
477698 GCTTTTGCAAGA-AA-CGTTTT-TTTCCCACCAAATT-TT-A-AAAAGTGTAAGTTCGTGC-CTC
372 GGTGTCGCAAGAGAAGC-TTTTCTTT-CCACC--GTTATTGATAGAA-TCAAAGTTTGT-CTCT-
** * * *** *** ** *
477756 T-AAGGAGACAAACATGGATTCT-AGTAAGGATCTTTATTCATTT-GG
430 TAAATAAGACAAACATGAATACTCA-TACTAATCCCCATTTTTTTCAG
* * * * * * * * * * * ** *
477801 TGATTAGTG-ACTATAAACACATTCTCCTTATTAGGGTAAATGATATTGACGATTTTCTTT-GGA
1 -GATTAG-GCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* ** * * * * * * * *
477864 ATTGAAATC-TTTTCTTTGC-CCTATTTTCCTTAAAA-AC-AAATTTGT-CCCCTTAAT-AGGGC
64 A--GAAA-CGCTTTCTTCCCACCAATTTT--TGAAAAGTCTAAGTTCGTGCCTC-AAATGA-GAC
* ** * * * ** * * * *
477923 AAGCATTTATTCTTGTAA-AAGTCTCCATTC-TTTCCATAATT-GAGAACCAAAAACACATTC-C
122 AAACATGGATTCTAGTAAGGA-TCTTCATTCATTT-TGTGATTAG-GCACTATAAACACATTCTC
* * * * ** ** * *
477984 CTTCACTAGGACACATGACATTGATTCTTTGATACT-GCAAC-AGAAA-CTTTTCTTTCCACCGT
184 C-TCATTAGGATAAATGATATTGATGGTTTTCT-TTGGC-ACGA-AAATCTTTTCTTTGC-CC-T
* ** * * * * * * * ** * * * * ** *
478046 -TATT-AATAGAATAAAAGTGTGTCTCTTAAATAAGATAAACATTAATACTAAT-ACTAATC-CT
243 ATTTTCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAAC-AGTCTC-
* * * * * ** * *
478107 CATTCCTTTCAAGATT-ACGCACCATAAACATAGTTTTC-TCATAAGGATACATGATATTGATGC
306 CATTCTTTTCAAAATTGA-GAACCAAAAACACA-TTCCCTTCATTAGGATACATGACATTGATGC
** * * * * * *
478170 TTTGGAT-TTACAAGA-AACGCTTTT-TTGCCCCTCAATTTTTGAAAAGAAT--AAGTTCGTGC-
369 TTTGG-TGTCGCAAGAGAA-GCTTTTCTTTCCAC-C-GTTATTG-ATAGAATCAAAGTTTGT-CT
* * * * *** ** *
478229 CTCAAATGAGACAAACATGGATTCT-AGTAAGGATCTTCATTCATTTT--G
428 CTTAAATAAGACAAACATGAATACTCA-TACTAATCCCCATT-TTTTTCAG
* * * * * * * * * * * *
478277 TGATTAGTG-ACTATAAACACATTCTGCTTATTAGGATAAATGATGTTGATGGGTTT-TTTTGGC
1 -GATTAG-GCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAT-GCTTTGGTTTCGC
* * * * * * * * * * *
478340 ACGGAAATC-TTTTCTCTACC-CTATTTTCTTTAAAA-TCAAAGTTTGTCCCCTC-AATAAGGCA
63 A-AGAAA-CGCTTTCT-TCCCACCAATTT-TTGAAAAGTCTAAGTTCGT-GCCTCAAATGAGACA
* * * *** * * * * *
478401 AGCAAT-GATT-TTGTAATGG-TCTCCATT--TTATTCAAAATCGAGAACCAAAAACACATTC-C
123 AAC-ATGGATTCTAGTAA-GGATCTTCATTCATT-TTGTGATTAG-GCACTATAAACACATTCTC
* * * ** * * *** * * * ** *
478460 CTTATTTTGTATACGTGACATTGATGCTTTTGGGTCGCATG--AAGCTTTTCTTCCCACCGT-TA
184 CTCA-TTAGGATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGC-CC-TATT
** * * * * * * * * * * ** *
478522 TT-GATAGAATCAAAGCTTGTCTCTTAAATAAGACAA-ATATGAATACTCAT-ACTAAT-TCCAA
246 TTCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCTTTG-ATTCTTGTAAC-AGTCTCC-A
* * * * * * * ** *
478583 TTCTTTTCAAGATT-AG--GCATTATAA-ACATTGTCTTCTCATAAAGATACACAATATTGATGC
308 TTCTTTTCAAAATTGAGAACCA--AAAACACATT-CCCT-TCATTAGGATACATGACATTGATGC
* * * *** ** ** * ** **
478644 TTTGAT-TCTTGTAACAGTCTCTACTCTTGT-CA---AAATTG--AGAACCAAAAACACATTCAC
369 TTTGGTGTC--GCAAGAGAAGCTTTTCTT-TCCACCGTTATTGATAGAATC---AA-AGTTTGTC
* *** ** ** ** * * **** *
478702 TTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAGAAGC-TTTTCTTTCCAT
427 -TC-TTA-AATA-A-GACAAACATGAATACTCAT-ACTA-ATCCCCATTTT-TTT-CAG
** ** * * * * * * *
478760 CTTTA---ATGATAGAATCAAAGT-TTGCCACTTACATAAGACAAACATGAATACTCATACTAAT
1 GATTAGGCACCATA-AA-CATAGTCTT----C-T-CATAAG-GATACACG-ATATTGATGCT--T
*** * * ** * * * * * * * *
478821 CCCCTTTC-CTTTTAAGATTAGGC-ACCAT--AAACATAGCCTTCTCATAAGGATGC-ACAATAT
54 -TGGTTTCGC----AAGA-AACGCTTTCTTCCCACCA-A--TTTTTGA-AAAG-T-CTA-AGT-T
* * *** * ** ** *** * * * * *
478881 TGATGCTTTCGTTTTGCA-AGAAAC--GCTTTCTTCTCACCAAT-TT--TTAAAATGTCTTAGTT
105 CG-TGC-CTC-AAATG-AGACAAACATGGATTCTAGT-AAGGATCTTCATT-CATTTTGTGA-TT
* * * * ** ** * * * * ** *
478940 CGTCCCT-TAAATGAGACAAGCATGGAT-TTTA-G-T-AAGGATCTTCATTCATTTTGTGATTAG
163 AGGCACTAT-AA--ACACATTC-T-CCTCATTAGGATAAATGATATTGA-TGGTTTTCT--TT-G
* * * * **** * * ** **
479000 GCACTATAAA-C---ACATT-CTCCTCTTTAGGAT-AAATGATA-TTGATGGT--TTTC--TTTG
219 GCACGA-AAATCTTTTCTTTGC-CCTATTTTCCTTAAAATCAAAGTT--T-GTCCCCTCAATAGG
*** * * * * * * * ***** *
479054 GC-A-C-AAAAATCTT-T-TCA-T-TGCC-CTATTTTC---CTT-AAAATC-AAAGTTTGTCCCC
279 GCAAGCTTTGATTCTTGTAACAGTCT-CCATTCTTTTCAAAATTGAGAACCAAAAACACATTCCC
* * * * * *** * * ** *
479106 TT-AATAGGGTA-A-G-CTTTGAT--TCT--TGT--C-ACAGTCTCTATTCTTTTCAAAGCT-TT
343 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATT
*** ** ** * ** **** * * *
479159 GAT-TCTTGTAA--CAGTCTC-CATTTTTTTCAAA-ATTGAAAAC-CAAAAAC-ACATTCCC--T
408 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATACTC--ATACTA-ATCCCCATT
*
479215 TTGTT-AG
469 TTTTTCAG
* ** * * ** * * * ** * ****
479222 GATACATGG-A--AT--TGAT-GCTTTGGTGTCGCAA-GA-A-AAGCTTTTCTTTCCACCGTTAT
1 GAT-TA-GGCACCATAAACATAG-TCT--TCTCATAAGGATACACGATATTGATGCTTTGGTT-T
* ** * * *** ***** * * * * * *
479278 TGGTAGAACCAAAG-TTT-GTCCCTTAAATAAGACAAACATGAATACCCATACTACCTTTCTTTT
60 CGCAAG-A--AACGCTTTCTTCCCACCAATTTTTGAAA-A-G--T--CTA-AGT-TCGTGC--CT
* * * ** * *
479341 TAGGATTAGACACCATAAACATAGCCTTCTCA-TAAGGATAC-ACGATATTGATGCTTTG-G-TT
112 CA--AAT-GAGA-C--AAACAT-GGATTCT-AGTAAGGAT-CTTC---ATTCAT--TTTGTGATT
** * * * * ** *** * * * *
479402 TTGCA--ATAAACGCCTTTTCCCCACCA--ATTTTTGTAAATT-CTAAGTTTGTGCATCAAATGA
163 AGGCACTATAAACACATTCTCCTCATTAGGATAAATG-ATATTGAT-GGTTT-T-C-T---TTG-
* * ** * ***
479462 G-ACAAAGATGGATTCTGGTAATGATCTTCATG-CAT-TTTGTGATTAGGCACTAT-AAACACAT
219 GCACGAA-A---A-TCT--T--T--TCTT--TGCCCTATTT-TCCTTA---A-AATCAAA-GTTT
* ** * * * ** *** ** ***
479523 -TCTCCTC-ATACGGATAAATGATATTATTAGTTTCTTTTGCCCAAAAATCTTTTCTTTTCCCTA
265 GTCCCCTCAATA-GG-GCAA-G---CT-TT-GATTCTTGT-AAC-AGTCTCCATTCTTTTCAAAA
** * * * ** * *
479586 TT---TTCCTTAAAACCAAAGTTGGTCCCCTCAAAAAGGCAAGTA-TTGATTC-TTGTAACAGTC
320 TTGAGAACC--AAAAACACA--T--TCCCTTC-ATTAGG--A-TACATGA--CATTG--A-TG-C
** * *** * **** ** * * * *
479646 TCCATTCTTTTTAAAATTGAGAACCAAAAACATATTCCTTCATTA-GGATACGTGACA-CGGATG
369 T---TTGGTGTCGCAA--GAGAAGC-TTTTC-T-TTCCACCGTTATTGATA---GA-ATC-AAAG
* ** * *** * * * * * **
479709 CTTTGTTGTCACAAGAGAAG-CTTTTCTTTCCGCCATTATTGATA-AAAT-CAAAGTTTGTCTTT
421 -TTTG-TCTCTTAA-ATAAGAC-AAAC-AT--G--AATACTCATACTAATCCCCA-TTT-T-TTT
*
479771 TA-
474 CAG
* * ** * *** * * * * * * * *** *
479773 -AATAAG-A-C--AAACAT-GAATACTCATACTAAT-CCCCATTCTTTTTAGGATTAGGCACCAT
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGA---TATTGATGCTTTGGTTTC-G
* * ** *** *** ** ** * *** ***
479831 AAAGATA-GCTTTC-TCATAAGGATACATGATATTGATGCTTTGCTT-TTGCAAGAAATGTTTTC
62 CAAGAAACGCTTTCTTCCCACCAATTTTTGA-AAAG-T-CTAAG-TTCGTGCCTCAAATG-AGAC
*** *** ** ** * ** * * * ** * *
479893 TTCCCACCAAAACTTAAAAAGTCTAAGTTCGTGCCGCTAATGAGACAAATATGG-ATTCTAGTAA
122 -AAACATGGATTC-TAGTAAG--GATCTTCAT-TC-ATTTTGTG---ATTA-GGCA--CTA-TAA
** * * * * ** *** * * *** * *
479957 GGATC-TTCT-TTCATTTGGTGATTAGTGACTATAAACACATTCTCCTTATTAGGATAAATGATA
174 ACA-CATTCTCCTCA-TTAG-GATAAATGA-TATTGA-TGGTTTTCTTTGGCACGA-AAAT-CT-
* * ** *****
480020 TTGATGGTTTTCTTTGGCACGAAAATCTTTTCATTACCCTATTTTCCTTAAAATCAAAGTTTGTC
231 TT--T-CTTTGCCCT---A-TTTTC---------------------CTTAAAATCAAAGTTTGTC
* * * * **
480085 CCCTTAATAGGGTAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTGAAAGCTTTGA-TTCTC-
268 CCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAA--ATTGAGAAC-CA
** * * * *
480148 TTAACAGTC-TCTACTCTTGTCAAAATTGAGAACCAAAAACACATTCACTTCATTAGGATACATG
330 AAAACA--CAT-T-C-CCT-TC---ATT-AG-------GATACA-TGA---CATT--G----ATG
* * * * * *
480212 ACATTGATGCTTTGTTGCCGCAAGAGAAGCTGTTCTTTCCATC-TCTATTGATAAAATCAAAGTT
368 -CTTTGGTG--TC------GCAAGAGAAGCTTTTCTTTCCACCGT-TATTGATAGAATCAAAGTT
* *
480276 TGTCTCTTAAATAAGGCAAACGTGAATACTCATACTAATCCCCATTCTTTTT-AG
423 TGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATT-TTTTTCAG
* * * * * * * *
480330 GATTAGGCACCATAAAGATAGCCATCTCATGAGGATACATGAAATTGATGCTTTGCTTTTGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* *** ** *
480395 AAACGTTTTCTTCCCACCAAAACTT-AGAAAGTCTAAGTTCGTGCCTGTAATGAGACAAATATGG
66 AAACGCTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * *
480459 ATTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTTGGAT
130 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * *
480524 AAATGATATTGATAG-TTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAACCAA
195 AAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* *
480588 AGTTGGTCCCCTCAATAAGGCAAG-TATTGATTCTTGTAACAGTCTCCATT-TTTTCAAAATTGA
260 AGTTTGTCCCCTCAATAGGGCAAGCT-TTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA
* * * * * * * * *
480651 GAACCTAAAACATATTCCTTTAATTTGTATACATGACATTGATGCTTTGGGGTCACAAGAAAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * ** * *
480716 TTTTCTTTTCACCGTTATTGATAGAATCAAAGTTTGTCTTTTGTATAAGACAAACAAGAATACTA
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
** ** * *
480781 ACGCTAATCCAGATTCTTTTCAA
454 ATACTAATCCCCATTTTTTTCAG
*
480804 GATTAGGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * *
480869 AAATGCTTTCTTCCCACGAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * * * *
480934 TTTTAGTAAAGATCTTCAGTCATTTTGTGATTAGTG-ACTATAAACACATTCTCCACTTTGGGTT
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGAT
* * * *
480998 AAAGGATATTGATGGTTTTCTTTGGCA-TAGAAATCTTTTTTTTACCCTATTTTCCTTAAAATCA
195 AAATGATATTGATGGTTTTCTTTGGCACGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
** *
481062 AAGTTTGTCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGA
259 AAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA
* * * *
481127 GAACCAAAAACATACTCCCTTCATTAGGATACATGACACTGATGCTTTGGTGTCACAAGAGAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * * * *
481192 TTTTCTTTCCACCGTTATTGATAAAATCAAAGTTTGTCTCTAAAATAAGGCGAACGTGAATACTC
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* * * *
481257 ATACTAATCGCCATTCTATTAAG
454 ATACTAATCCCCATTTTTTTCAG
* * * * *
481280 GATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* *** * * *
481345 AAACGTTTTCTTCCCACCAAAACTT-AGAAAGTCTAAGTTTGTGCCT-ATAATGAGACAAATATC
66 AAACGCTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCCTCA-AATGAGACAAACATG
* * *
481408 GTTTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCA-TGATAAACACATTCTCCTCATTCGG
129 GATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTAGG
* * *
481472 ATAAATGATATTGATAG-TTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAATC
193 ATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* * * *
481536 AAAGTTGGTCCCCTCAATAAGGCAAGCATTGATTCTTGTAACAGTCTCAATT-TTTTCAAAATTG
258 AAAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTG
* * * * * * * * *
481600 AGAACCTAAAACATATTCCTTTAATTTGTATACGTGACATTGATGCTTTGG-GTCACAAGAAAAG
323 AGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAG
* * * **
481664 CTTTTCTTTTCACCGTTATTGATAGAATCAAAATTTGTCTTTTGTATAAGACAAACATGAATACT
388 CTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* ** ** * *
481729 AACGCTAATCCAGATTCTTTTCAA
453 CATACTAATCCCCATTTTTTTCAG
* *
481753 GATTAGGCACCATAAACATAATCTTCTCACAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * * *
481818 AAATGCTTTCTTCCTACCAAATTTTAAAAAGTCTAAGTCCATGCCTCAAATGAGACAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
481883 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGTG-A-TGATAAACACATTCTCCACATTAGGT
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAG-GCACT-ATAAACACATTCTCCTCATTAGGA
* * * *
481946 TAAAGGATATTGATGGTTTTCTTTGGCACGGAAATCTTTTCTTTACCCTATTTTTCTTAAAATCA
194 TAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* ** * * *
482011 AAGTTTGGCCCCTCAATAGGGCAAGCAATGATTCTTATAACAATCTCCATTCTTTTTAAAATTGA
259 AAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA
* * * * *
482076 GAACCGAAAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * * * * *
482141 TTTTCTTTCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATGAGGCAACCGTGAATACTC
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
482206 ATACTAATCCCCATTCTTTTT-AG
454 ATACTAATCCCCATT-TTTTTCAG
* * * * *
482229 GATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* *** ** *
482294 AAACGTTTTCTTCCCACCAAAACTT-AGAAAGTCTAAGTTCGTGCCTGTAATGAGACAAATATGG
66 AAACGCTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * *
482358 ATTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTCGGAT
130 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * * *
482423 AAATGATATTGATAG-TTTCTTTTGCACAAAAATCTTTTCTTTTCCCTATTTTCCTTAAAACCAA
195 AAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * *
482487 AGTTGGTCCCCTCAATAAGGCATG-TATTGATTCTTGTAACAGTCTCCATT-TTTTCAAAATTGA
260 AGTTTGTCCCCTCAATAGGGCAAGCT-TTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA
* * * * * * * * *
482550 GAACCTAAAACATATTCCTTTAATTTGTATACATGACATTGATGCTTTGGGGTCACAAGAAAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * * ** *
482615 TTTTCTTTTCACCGTTATTGATAGAATCAATGTTTGTCTTTTGTATAAGACAAACATGAATACTA
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
** ** * *
482680 ACGCTAATCCAGATTCTTTTCAA
454 ATACTAATCCCCATTTTTTTCAG
* *
482703 GATTAGGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * *
482768 AAATGCTTTCTTCCCACGAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * * * * * *
482833 TTTTAGTAAAGATCTT-GTGTCAATTTGTGATTAGTG-ACTATAAACACATTGTCCACTTTGGGT
131 TTCTAGTAAGGATCTTCAT-TCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGA
* *
482896 TAAAGGATATTGATGGTTTTCTTTGGCAC-AGAAATCTTTTCTTTACCCTATTTTCCTTAAAATC
194 TAAATGATATTGATGGTTTTCTTTGGCACGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
** *
482960 AAAGTTTGTCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTG
258 AAAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTG
* * * * *
483025 AGAACCAAAAACATACTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAG
323 AGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAG
* * * * * *
483090 CTTTTCCTTCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCGAACGTGAATACT
388 CTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* *
483155 CATACTAATCACCATTCTATTT-AG
453 CATACTAATCCCCATT-TTTTTCAG
* * * * *
483179 GATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * *** ** * *
483244 AAAGGTTTTCTTCCCACCAAAACTT-AGAAAGTCTAAGTTCGTGCCTGTAATGAGACAAATATCG
66 AAACGCTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * * *
483308 TTTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTCGGAT
130 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * * *
483373 AAATGATATTGATAG-TTTCTTTTGCACAAAAATCTTTTCTTTTCCCTATTTTCCTTAAAACCAA
195 AAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * *
483437 AGTTGGTCCCCTCAATAAGGCATG-TATTGATTCTTGTAACAGTCTCCATT-TTTTCAAAATTGA
260 AGTTTGTCCCCTCAATAGGGCAAGCT-TTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA
* * * * * * * * *
483500 GAACCTAAAACATATTCCTTTAATTTGTATACATGACATTGATGCTTTGGGGTCACAAGAAAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * * ** *
483565 TTTTCTTTTCACCGTTATTGATAGAATCAATGTTTGTCTTTTGTATAAGACAAACATGAATACTA
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
** ** * *
483630 ACGCTAATCCAGATTCTTTTCAA
454 ATACTAATCCCCATTTTTTTCAG
* *
483653 GATTAGGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * *
483718 AAATGCTTTCTTCCCACGAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * * * * *
483783 TTTTAGTAAAGATCTT-GTGTCATTTTGTGATTAGTG-ACTATAAACACATTGTCCACTTTGGGT
131 TTCTAGTAAGGATCTTCAT-TCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGA
* * *
483846 TAAAGGATATTGATGGTTTTCTTTGGCAC-AGAAATCTTTTCTTTACCCTATTTTTCTTAAAATC
194 TAAATGATATTGATGGTTTTCTTTGGCACGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* ** * * *
483910 AAAGTTTGGCCCCTCAATAGGGCAAGCAATGATTCTTATAACAATCTCCATTCTTTTTAAAATTG
258 AAAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTG
* * * * *
483975 AGAACCGAAAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAG
323 AGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAG
* * * * *
484040 CTTTTCTTTCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCGAACGTGAATACT
388 CTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT
* *
484105 CATACTAATCGCCATTCTATTT-AG
453 CATACTAATCCCCATT-TTTTTCAG
* * * * *
484129 GATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
** *** * *
484194 AAACATTTTCTTCCCACCAAAACTT-AGAAAGTCCAAGTTCGTGCCTGTAATGAGATGCCTGTAA
66 AAACGCTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCC----------T--C--AAA
* * * * *
484258 TGAGACAAATATCGTTTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACATT
116 TGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * *
484323 CTCCTCATTCGGATAAATGATATTGATAG-TTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATT
181 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATT
* * * *
484387 TTCCTTAAAACCAAAGTTGGTCCCCTTAATAAGGCAAG-TATTGATTCTTGTAACAGTCTCCATT
246 TTCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCT-TTGATTCTTGTAACAGTCTCCATT
* * * * * * *
484451 -TTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGTATACATGACATTGATGCTTTGGG
310 CTTTTCAAAATTGAGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * **
484515 GTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATCAAAG-TTCTCTTTTGTATAAGAC
375 GTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* ** ** * *
484579 AAACATGAATACTAACGCTAATCCAGATTCTTTTCAA
440 AAACATGAATACTCATACTAATCCCCATTTTTTTCAG
*
484616 GATTAGGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* *** * * *
484681 AAATGCTTTCTTCCCTTGAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * * * * *
484746 TTTTAGTAAAGATCTTCAGTCATTTTGTGATTAATG-ACTATAAACACATTCTCCACTTTGGGTT
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATT-AGGCACTATAAACACATTCTCCTCATTAGGAT
* *
484810 AAAGGATATTGATGGTTTTCTTTGGCAC-AGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
195 AAATGATATTGATGGTTTTCTTTGGCACGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
** *
484874 AAGTTTGTCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGA
259 AAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA
* * * * *
484939 GAACCAAAAACATATTCCCTTCATTAGGATACGTGACACTGGTGCTTTGGTGTCACAAGAGAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * * * *
485004 TTTTCTTTCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCGAACGTGAATACTC
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* *
485069 ATACTAATCGCCATTCTATTT-AG
454 ATACTAATCCCCATT-TTTTTCAG
* * * * *
485092 GATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* *** * *
485157 AAAC-TTTTCTTCCCACCAAAACTT-AGAAAGTCCAAGTTCGTGCCTGTAATGAGATGCCTGTAA
66 AAACGCTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCC----------T--C--AAA
* * * * *
485220 TGAGACAAATATCGTTTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACATT
116 TGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * *
485285 CTCCTCATTCGGATAAATGATATTGATAG-TTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATT
181 CTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATT
* * * *
485349 TTCCTTAAAACCAAAGTTGGTCCCCTTAATAAGGCAAG-TATTGATTCTTGTAACAGTCTCCATT
246 TTCCTTAAAATCAAAGTTTGTCCCCTCAATAGGGCAAGCT-TTGATTCTTGTAACAGTCTCCATT
* * * * * * *
485413 -TTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGTATACATGACATTGATGCTTTGGG
310 CTTTTCAAAATTGAGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * **
485477 GTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATCAAAGTTTCTCTTTTGTATAAGAC
375 GTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* ** ** * * *
485542 AAACATGAATACTAACGCTAATCCAGATTCTGTTCAA
440 AAACATGAATACTCATACTAATCCCCATTTTTTTCAG
*
485579 GATTAGGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * * *
485644 AAATGCTTTCTTCCCTCGAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * * * * *
485709 TTTTAGTAAAGATCTTCAGTCATTTTGTGATTAATG-ACTATAAACACATTCTCCACTTTGGGTT
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATT-AGGCACTATAAACACATTCTCCTCATTAGGAT
* *
485773 AAAGGATATTGATGGTTTTCTTTGGCAC-AGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
195 AAATGATATTGATGGTTTTCTTTGGCACGA-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
** *
485837 AAGTTTGTCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGA
259 AAGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA
* * * * *
485902 GAACCAAAAACATACTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGC
324 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
* * * * *
485967 TTTTCTTTCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCGAACGTGAATACTC
389 TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTC
* *
486032 ATACTAATCGCCATTCTATTT-AG
454 ATACTAATCCCCATT-TTTTTCAG
* * * * *
486055 GATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* *** ** * *
486120 AAACGTTTTCTTCCCACCAAAACTT-AGAAAGTCTAAGTTCGTGCCTGTAATGAGACAAATATCG
66 AAACGCTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * * *
486184 TTTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTCGGAT
130 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * *
486249 AAATGATATTGATAG-TTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAACCAA
195 AAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* * * *
486313 AGTTGGTCCCCTCAATAAGGCAAGCATTGATTCTTGTAACAGTCTCAATT-TTTTCAAAATTGAG
260 AGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAG
* * * * * * * * * *
486377 AACCTAAAACATATTCCTTTAATTTGTATACATGACATTGGTGCTTTGGGGTCACAAGAAAAGCT
325 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCT
* * ** *
486442 TTTCTTTTCACCGTTATTGATAGAATCAAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAA
390 TTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
** ** * *
486507 CGCTAATCCAGATTCTTTTCAA
455 TACTAATCCCCATTTTTTTCAG
* *
486529 GATTAGGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTTGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * *
486594 AAATGCTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * *
486659 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGTG-ACGATAAACACATTCTCCACATTAGGTT
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGAT
* * * *
486723 AAAGGATATTGATGGTTTTCTTTGGCACGGAAATCTTTTCTTTACCCTATTTTTCTTAAAATCAA
195 AAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
* ** * *
486788 AGTTTCTCCCCTCAATAGGGCAAGCAATGATTCTTATAACAGTCTCCATTCTTTTTAAAATTGAG
260 AGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAG
* * * *
486853 AACCAAAAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCT
325 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCT
* *
486918 TTTCTTTCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
390 TTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
486983 TACTAATCCCCATTCTTTTT-AG
455 TACTAATCCCCATT-TTTTTCAG
* * * * * *
487005 GATTAGGCACCATAAAGATAGCCTTCTCATAA-GATACATGATAATGATGCTTTGCTTTTGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* *** * * *
487069 AAACGTTTTCTTCCCACCAAAACTT-AGAAAGTCTAAGTTCGTGCCGCTAATGAGACAAATATGG
66 AAACGCTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * * *
487133 ATTCTAGTAAGGATCTTCTTTCATTTGGTGTTTAGTG-ACTATAAACACATTCTCCTTATTAGGA
130 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGA
* * * * *
487197 TAAATGATATTAATGGTTTTCTTTGGCACGAAAATCTTGTCATTACCCTATTTTTCTTAAAATCA
194 TAAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * *
487262 AAGTTTATCTCCTCAATAGGGCAAGCATTT-ATTCTTGTAACAGTCACCATTCTTTTCAAAATTG
259 AAGTTTGTCCCCTCAATAGGGCAAGC-TTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTG
*
487326 AAAACCAAAAACACATTCCCTTCATTAGGATACATGGA-ATTGATGCTTTGGTGTCGCAAGAGAA
323 AGAACCAAAAACACATTCCCTTCATTAGGATACAT-GACATTGATGCTTTGGTGTCGCAAGAGAA
*
487390 GCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATAC
387 GCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* * * *
487455 TTATAGTAATCCCAATTCTTTTCAG
452 TCATACTAATCCCCATTTTTTTCAG
* * * * * *
487480 GATTAGGCACCACAAACACAGTTTTCTCATAAGGATGCACGATATTGATGCTTTTGTTTTGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * ** * * *
487545 AAACGCTTTCTTCCTACCAATTTTTCAACTGTCTAAGTTCATCCCTTAAATGAGACAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* *
487610 TTTTAGTAAGGATCTTCAATCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* * *
487675 AATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCATTGCCTTATGTTCCTTAAAATCAAA
196 AATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* * * * *
487740 GTTTGTCCCCTTAATATGGTAAGCTTTGATTCTTATGACAGTCTCCATTCTTTTCTAAGCTTTGA
261 GTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTC-AA------A
* * * ** * *
487805 TTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAGAACCAAAAACCCATTCGCTTCATTAGGATA
319 --ATTG----AG-----A-AC----C--AA---A-AA-CACATTCCCTTC------ATTAGGATA
* * * *
487870 CATGACATTGATGCTTTGTTGTCGCAAGAGAAGCTTTTCTTTCCATCTTTAATGATAGAATCAAA
355 CATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAA
* * *
487935 GTTTGTCTTTTAAATAAGACAAACATGAATACTAATACTAATCCGC-TTTCTTTTCAG
420 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTT-TTTTCAG
* * * *
487992 GATTA-GCACCATACACATAGTCTTCTCATAAGGATACAC-ATGTTGATCCTTTGGTTTTGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * ** * * ** * * * * *
488055 AAACACTTTTTTTGCACCAATTTTTGTAAATTCTAAGTTTATGTCTCAAATAAGGCAAAGAAGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * *
488120 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCTTCATTAGGATA
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
* * * * * *
488185 AATGATAGTGATAG-TTTCTTTTGCATGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAACCAAA
196 AATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
* * * * * *
488249 GTTGGT-CCCTCAATAAGGCAGGCATTGATTCTTTTAATAGTCTCCATT-TTTTCAAAATTGAGA
261 GTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAGA
* * * * * * * * * * * *
488312 ACCTAAAAGATATTCCTTTAATTTGTACACGTGACGTTGATGCTTTGGGGTTGCAAGAGAAGCTT
326 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTT
* * * *
488377 TTCTTTCCACCTTTATTGATAGAATCAAAGTTTGTCTTTTATATAAGACAAACATGAATACTAAT
391 TTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
* ** * *
488442 GCTAATCCAGATTCTTTTCAA
456 ACTAATCCCCATTTTTTTCAG
* **
488463 GATTTGGCACCATAAACATAACCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * *
488528 AAATGCTTTTTTCCCACCAAATTTAGAAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGA
66 AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* *
488593 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGTG-ACTATAAACACATTCTCCACATTAGGTT
131 TTCTAGTAAGGATCTTCATTCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGAT
* * ** *
488657 AAAGGATATTAATGGTTTTCTTCAGCACGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAA
195 AAATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
** * *
488722 AGTTTGTCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTTTTTTAAAAATTGAG
260 AGTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAG
* * * * *
488787 AACCAAAAACATATTCTCTTCATTAGGATACGTGACATTGATGCTTTGGTGTCACAAGAAAAGCT
325 AACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCT
* * * * *
488852 TTTCTTTTCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTACATAAGGCAAACATGAATACTCA
390 TTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
*
488917 TACTAATCCCCATTCTTTTCAG
455 TACTAATCCCCATTTTTTTCAG
* * * * *
488939 GATTAAGCACCATAAACATAGCCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * *** * *
489004 AAACGTTTTCTTCACACCAAAACTT-AGAAAGTCTAAGTCCGTGCCTCTAATGAGACAAACATGG
66 AAACGCTTTCTTCCCACCAATTTTTGA-AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * *
489068 ATTCTAGTAAAGATCTTCATTCATTTGGTGATTAGTG-ACTATAAACACATTCTCCTTATTAGGA
130 ATTCTAGTAAGGATCTTCATTCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGA
489132 TA
194 TA
489134 TGTTAGGATC
Statistics
Matches: 16231, Mismatches: 3559, Indels: 2374
0.73 0.16 0.11
Matches are distributed among these distances:
446 2 0.00
447 4 0.00
448 3 0.00
449 9 0.00
450 5 0.00
451 7 0.00
452 8 0.00
453 4 0.00
454 1 0.00
455 1 0.00
456 5 0.00
457 12 0.00
458 16 0.00
459 20 0.00
460 16 0.00
461 15 0.00
462 12 0.00
463 381 0.02
464 15 0.00
465 19 0.00
466 11 0.00
467 27 0.00
468 16 0.00
469 14 0.00
470 18 0.00
471 502 0.03
472 410 0.03
473 723 0.04
474 2978 0.18
475 3036 0.19
476 4347 0.27
477 319 0.02
478 30 0.00
479 30 0.00
480 22 0.00
481 27 0.00
482 30 0.00
483 20 0.00
484 24 0.00
485 21 0.00
486 27 0.00
487 346 0.02
488 240 0.01
489 187 0.01
490 90 0.01
491 28 0.00
492 12 0.00
493 28 0.00
494 32 0.00
495 17 0.00
496 29 0.00
497 18 0.00
498 32 0.00
499 34 0.00
500 50 0.00
501 48 0.00
502 39 0.00
503 22 0.00
504 28 0.00
505 27 0.00
506 38 0.00
507 26 0.00
508 70 0.00
509 65 0.00
510 188 0.01
511 381 0.02
512 209 0.01
513 6 0.00
514 14 0.00
515 5 0.00
516 2 0.00
517 4 0.00
519 5 0.00
520 5 0.00
521 1 0.00
522 3 0.00
523 8 0.00
524 3 0.00
525 10 0.00
526 6 0.00
527 9 0.00
528 8 0.00
529 5 0.00
530 15 0.00
531 9 0.00
532 13 0.00
533 12 0.00
534 5 0.00
535 4 0.00
536 16 0.00
537 12 0.00
538 13 0.00
539 10 0.00
540 3 0.00
541 13 0.00
542 15 0.00
543 9 0.00
544 14 0.00
545 19 0.00
546 33 0.00
547 19 0.00
548 23 0.00
549 39 0.00
550 25 0.00
551 26 0.00
552 29 0.00
553 24 0.00
554 17 0.00
555 10 0.00
556 11 0.00
557 16 0.00
558 19 0.00
559 25 0.00
560 25 0.00
561 29 0.00
562 29 0.00
563 24 0.00
564 9 0.00
565 13 0.00
566 7 0.00
567 7 0.00
568 10 0.00
569 6 0.00
570 1 0.00
571 6 0.00
573 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
GATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
AAACGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
TTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
AATGATATTGATGGTTTTCTTTGGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA
GTTTGTCCCCTCAATAGGGCAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAGA
ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTT
TTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
ACTAATCCCCATTTTTTTCAG
Found at i:471315 original size:18 final size:18
Alignment explanation
Indices: 471292--471351 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
471282 GTAAGCTTTG
471292 ATTCTTGCAACAGTCTCC
1 ATTCTTGCAACAGTCTCC
* * *
471310 ATTCTTTTCAA-A-CCTTCG
1 ATTC-TTGCAACAGTC-TCC
*
471328 ATTCTTGTAACAGTCTCC
1 ATTCTTGCAACAGTCTCC
471346 ATTCTT
1 ATTCTT
471352 TTCAAAATTG
Statistics
Matches: 31, Mismatches: 7, Indels: 8
0.67 0.15 0.17
Matches are distributed among these distances:
17 5 0.16
18 20 0.65
19 6 0.19
ACGTcount: A:0.22, C:0.28, G:0.08, T:0.42
Consensus pattern (18 bp):
ATTCTTGCAACAGTCTCC
Found at i:472052 original size:22 final size:22
Alignment explanation
Indices: 472024--472065 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
472014 CATCTCATAA
472024 GGATACGCGATATTGATGCTTT
1 GGATACGCGATATTGATGCTTT
472046 GGATACGCGATATTGATGCT
1 GGATACGCGATATTGATGCT
472066 AATCCCCAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (22 bp):
GGATACGCGATATTGATGCTTT
Found at i:476539 original size:36 final size:36
Alignment explanation
Indices: 476470--476539 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
476460 TAGGGTAAGT
* * *
476470 TTTGATTCTTGTAACAGTCTCCATTCTTTTCAAAGC
1 TTTGATTCTTGTAACAGTCACCACTCTTGTCAAAGC
* *
476506 TTTGATTTTTGTAACAGTCACTACTCTTGTCAAA
1 TTTGATTCTTGTAACAGTCACCACTCTTGTCAAA
476540 ATTGAGAACC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.24, C:0.20, G:0.11, T:0.44
Consensus pattern (36 bp):
TTTGATTCTTGTAACAGTCACCACTCTTGTCAAAGC
Found at i:478864 original size:243 final size:241
Alignment explanation
Indices: 478432--478889 Score: 625
Period size: 243 Copynumber: 1.9 Consensus size: 241
478422 TCCATTTTAT
* * * *
478432 TCAAAATCGAGAACCAAAAACACATTCCCTTATTTTGTATACGTGACATTGATGCTTTTGGGTCG
1 TCAAAATCGAGAACCAAAAACACATTCACTTATTTAGGATACATGACATTGATGCTTTTGGGTCG
* * * * *
478497 CATGAAGCTTTTCTTCCCACCGTTATTGATAGAATCAAAGCTTGTCTCTTAAATAAGACAAATAT
66 CAAGAAGCTTTTCTTCCCACCGTTAATGATAGAATCAAAGCTTGCCACTTAAATAAGACAAACAT
* ** * *
478562 GAATACTCATACTAATTCCAATTCTTTTCAAGATTAGGCATTATAAACATTGTCTTCTCATAAAG
131 GAATACTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGCCTTCTCATAAAG
478627 ATACACAATATTGATGCTTTGATTCTTGTAACAGTCTCTACTCTTG
196 ATACACAATATTGATGCTTTGATTCTTGTAACAGTCTCTACTCTTG
* *
478673 TCAAAATTGAGAACCAAAAACACATTCACTTCA-TTAGGATACATGACATTGATGC-TTTGTTGT
1 TCAAAATCGAGAACCAAAAACACATTCACTT-ATTTAGGATACATGACATTGATGCTTTTG-GGT
* * * * *
478736 CGCAAGAGAAGCTTTTCTTTCCATCTTTAATGATAGAATCAAAGTTTGCCACTTACATAAGACAA
64 CGC-A-AGAAGCTTTTCTTCCCACCGTTAATGATAGAATCAAAGCTTGCCACTTAAATAAGACAA
**
478801 ACATGAATACTCATACTAATCCCCTTTCCTTTT-AAGATTAGGCACCATAAACATAGCCTTCTCA
127 ACATGAATACTCATACTAATCCCAATT-CTTTTCAAGATTAGGCACCATAAACATAGCCTTCTCA
* *
478865 TAAGGATGCACAATATTGATGCTTT
191 TAAAGATACACAATATTGATGCTTT
478890 CGTTTTGCAA
Statistics
Matches: 187, Mismatches: 25, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
240 4 0.02
241 53 0.28
242 2 0.01
243 123 0.66
244 5 0.03
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.34
Consensus pattern (241 bp):
TCAAAATCGAGAACCAAAAACACATTCACTTATTTAGGATACATGACATTGATGCTTTTGGGTCG
CAAGAAGCTTTTCTTCCCACCGTTAATGATAGAATCAAAGCTTGCCACTTAAATAAGACAAACAT
GAATACTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGCCTTCTCATAAAG
ATACACAATATTGATGCTTTGATTCTTGTAACAGTCTCTACTCTTG
Found at i:479147 original size:18 final size:19
Alignment explanation
Indices: 479122--479176 Score: 60
Period size: 18 Copynumber: 3.0 Consensus size: 19
479112 GGGTAAGCTT
479122 TGATTCTTGTCACAGTCTC
1 TGATTCTTGTCACAGTCTC
* * *
479141 T-ATTCTTTTCAAAG-CTT
1 TGATTCTTGTCACAGTCTC
*
479158 TGATTCTTGTAACAGTCTC
1 TGATTCTTGTCACAGTCTC
479177 CATTTTTTTC
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
17 3 0.11
18 21 0.78
19 3 0.11
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45
Consensus pattern (19 bp):
TGATTCTTGTCACAGTCTC
Found at i:479163 original size:36 final size:36
Alignment explanation
Indices: 479116--479189 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 36
479106 TTAATAGGGT
* *
479116 AAGCTTTGATTCTTGTCACAGTCTCTATTCTTTTCA
1 AAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCA
*
479152 AAGCTTTGATTCTTGTAACAGTCTCCATTTTTTTCA
1 AAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCA
479188 AA
1 AA
479190 ATTGAAAACC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (36 bp):
AAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCA
Found at i:483093 original size:950 final size:949
Alignment explanation
Indices: 478645--489133 Score: 15189
Period size: 950 Copynumber: 10.9 Consensus size: 949
478635 TATTGATGCT
* * * * * * *
478645 TTGATTCTTGTAACAGTCTCTACTCTTGTCAAAATTGAGAACCAAAAACACATTCAC-TTCATTA
1 TTGATTCTTGTAACAGTCTCCA-TTTTTTCAAAATTGAGAACCTAAAACATATTC-CTTTAATTT
* ** * * * * * *
478709 GGATACATGACATTGATGCTTTGTTGTCGCAAGAGAAGCTTTTCTTTCCATCTTTAATGATAGAA
64 GTATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAA
* ** ** * ** ***
478774 TCAAAGTTTGCCACTTACATAAGACAAACATGAATACTCATACTAATCCCCTTTCCTTTT-AAGA
129 TCAAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATT-CTTTTCAAGA
** * * * *
478838 TTAGGCACCATAAACATAGCCTTCTCATAAGGATGCACAATATTGATGCTTTCGTTTTGCAAGAA
193 TTAGGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAA
* * * * * * * * *
478903 ACGCTTTCTTCTCACCAATTTTTAAAATGTCTTAGTTCGTCCCTTAAATGAGACAAGCATGGATT
258 ATGCTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATT
* * *
478968 TTAGTAAGGATCTTCAT-TCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCTTTAGGATA
323 TTAGTAAAGATCTTC-TGTCATTTTGTGATTAGTG-ACTATAAACACATTCTCCACTTTAGGTTA
* * * *
479031 AATGATATTGATGGTTTTCTTTGGCACAAAAATCTTTTCATTGCCCTATTTTCCTTAAAATCAAA
386 AAGGATATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAA
*
479096 GTTTGTCCCCTTAATAGGGTAAGCTTTGATTCTTGTCACAGTCTCTATTCTTTTCAAAGCTTTGA
451 GTTTGTCCCC-TCA-A---T-AG----G------G-CA-AG-------------C-AA----TGA
* * **
479161 TTCTTGTAACAGTCTCCATT-TTTTTCAAAATTGAAAACCAAAAACACATTCCCTTTGTTAGGAT
480 TTCTTGTAACAGTCTCCATTCTTTTT-AAAATTGAGAACCAAAAACATATTCCCTTCATTAGGAT
* * * * * * * *
479225 ACATGGA-ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTATTGGTAGAACCA
544 ACGT-GACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCGCCGTTATTGATAAAATCA
* * * * *
479289 AAGTTTGTCCCTTAAATAAGACAAACATGAATACCCATACT-A---CCTTTCTTTTTAGGATTAG
608 AAGTTTGTCTCTTAAATAAGGC-AACGTGAATACTCATACTAATCCCCATTCTTTTTAGGATTAG
* * * * *
479350 ACACCATAAACATAGCCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGCAATAAACGC
672 GCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCAAGAAACG-
** * * * * ** *
479415 CTTTTC--CCCACC-AATTTTTGTAAATTCTAAGTTTGTGCATCAAATGAGACAAAGATGGATTC
736 -TTTTCTTCCCACCAAAACTTAG-AAAGTCTAAGTTCGTGCCTGTAATGAGACAAATATGGATTC
* * * * * *
479477 TGGTAATGATCTTCATGCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATACGGATAAAT
799 TAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTCGGATAAAT
* *
479542 GATATT-ATTAGTTTCTTTTGCCCAAAAATCTTTTCTTTTCCCTATTTTCCTTAAAACCAAAGTT
864 GATATTGA-TAGTTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAACCAAAGTT
*
479606 GGTCCCCTCAAAAAGGCAAGTA
928 GGTCCCCTCAATAAGGCAAGTA
* * * *
479628 TTGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAAAAACATATTCC-TTCATTAG
1 TTGATTCTTGTAACAGTCTCCATT-TTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTG
* * ** ** * * * * *
479692 GATACGTGACACGGATGCTTTGTTGTCACAAGAGAAGCTTTTCTTTCCGCCATTATTGATAAAAT
65 TATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAAT
** * ** ** * *
479757 CAAAGTTTGTCTTTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATT
130 CAAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATT
* * * * *
479822 AGGCACCATAAAGAT-AGCTTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCAAGAAA
195 AGGCACCATAAACATAATC-TTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAA
* ** * * * * *
479886 TGTTTTCTTCCCACCAAAACTTAAAAAGTCTAAGTTCGTGCCGCTAATGAGACAAATATGGATTC
259 TGCTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTT
* * * * *
479951 TAGTAAGGATCTTCTTTCATTTGGTGATTAGTGACTATAAACACATTCTCC-TTATTAGGATAAA
324 TAGTAAAGATCTTCTGTCATTTTGTGATTAGTGACTATAAACACATTCTCCACT-TTAGGTTAAA
* *
480015 TGATATTGATGGTTTTCTTTGGCAC-GAAAATCTTTTCATTACCCTATTTTCCTTAAAATCAAAG
388 GGATATTGATGGTTTTCTTTGGCACAG-AAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAG
* * **
480079 TTTGTCCCCTTAATAGGGTAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTGAAAGCTTTGAT
452 TTTGTCCCCTCAATAGGGCAAGCAATGATTCTTGT---A------A--C-------A-----G--
* *
480144 TCTCTTAACAGTCTCTACTCTTGTCAAAATTGAGAACCAAAAACACATTCACTTCATTAGGATAC
492 TCTC----CA-T-TCT--T-TT-T-AAAATTGAGAACCAAAAACATATTCCCTTCATTAGGATAC
* * * * * * **
480209 ATGACATTGATGCTTTGTTGCCGCAAGAGAAGCTGTTCTTTCCATC-TCTATTGATAAAATCAAA
546 GTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCGCCGT-TATTGATAAAATCAAA
480273 GTTTGTCTCTTAAATAAGGCAAACGTGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGC
610 GTTTGTCTCTTAAATAAGGC-AACGTGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGC
* * *
480338 ACCATAAAGATAGCCATCTCATGAGGATACATGAAATTGATGCTTTGCTTTTGCAAGAAACGTTT
674 ACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCAAGAAACGTTT
480403 TCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCCTGTAATGAGACAAATATGGATTCTAGTA
739 TCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCCTGTAATGAGACAAATATGGATTCTAGTA
*
480468 AGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTTGGATAAATGATAT
804 AGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTCGGATAAATGATAT
480533 TGATAGTTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAACCAAAGTTGGTCCC
869 TGATAGTTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAACCAAAGTTGGTCCC
480598 CTCAATAAGGCAAGTA
934 CTCAATAAGGCAAGTA
480614 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
1 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
480679 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
66 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
*
480744 AAAGTTTGTCTTTTGTATAAGACAAACAAGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
131 AAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
480809 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
196 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
*
480874 CTTTCTTCCCACGAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
261 CTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
* *
480939 GTAAAGATCTTCAGTCATTTTGTGATTAGTGACTATAAACACATTCTCCACTTTGGGTTAAAGGA
326 GTAAAGATCTTCTGTCATTTTGTGATTAGTGACTATAAACACATTCTCCACTTTAGGTTAAAGGA
* *
481004 TATTGATGGTTTTCTTTGGCATAGAAATCTTTTTTTTACCCTATTTTCCTTAAAATCAAAGTTTG
391 TATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTTG
481069 TCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAA
456 TCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAA
* *
481134 AAACATACTCCCTTCATTAGGATACATGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTT
521 AAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTT
* *
481199 TCCACCGTTATTGATAAAATCAAAGTTTGTCTCTAAAATAAGGCGAACGTGAATACTCATACTAA
586 TCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGC-AACGTGAATACTCATACTAA
* * *
481264 TCGCCATTCTATTAAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGAT
650 TCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGAT
* *
481329 GCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTTGTGCCTATA
715 GCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCCTGTA
* * *
481394 ATGAGACAAATATCGTTTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATGATAAACACAT
780 ATGAGACAAATATGGATTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACAT
481459 TCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATT
845 TCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATT
* *
481524 TTCCTTAAAATCAAAGTTGGTCCCCTCAATAAGGCAAGCA
910 TTCCTTAAAACCAAAGTTGGTCCCCTCAATAAGGCAAGTA
*
481564 TTGATTCTTGTAACAGTCTCAATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
1 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
*
481629 ATACGTGACATTGATGCTTT-GGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
66 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
*
481693 AAAATTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
131 AAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
*
481758 GGCACCATAAACATAATCTTCTCACAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
196 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
* * *
481823 CTTTCTTCCTACCAAATTTTAAAAAGTCTAAGTCCATGCCTCAAATGAGACAAACATGGATTCTA
261 CTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
*
481888 GTAAAGATCTTCAT-TCATTTTGTGATTAGTGA-TGATAAACACATTCTCCACATTAGGTTAAAG
326 GTAAAGATCTTC-TGTCATTTTGTGATTAGTGACT-ATAAACACATTCTCCACTTTAGGTTAAAG
* *
481951 GATATTGATGGTTTTCTTTGGCACGGAAATCTTTTCTTTACCCTATTTTTCTTAAAATCAAAGTT
389 GATATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTT
* * *
482016 TGGCCCCTCAATAGGGCAAGCAATGATTCTTATAACAATCTCCATTCTTTTTAAAATTGAGAACC
454 TGTCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACC
*
482081 GAAAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTC
519 AAAAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTC
*
482146 TTTCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATGAGGCAACCGTGAATACTCATACT
584 TTTCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAA-CGTGAATACTCATACT
482211 AATCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTG
648 AATCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTG
482276 ATGCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCCTG
713 ATGCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCCTG
482341 TAATGAGACAAATATGGATTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACAC
778 TAATGAGACAAATATGGATTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACAC
*
482406 ATTCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACAAAAATCTTTTCTTTTCCCTA
843 ATTCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACGAAAATCTTTTCTTTTCCCTA
*
482471 TTTTCCTTAAAACCAAAGTTGGTCCCCTCAATAAGGCATGTA
908 TTTTCCTTAAAACCAAAGTTGGTCCCCTCAATAAGGCAAGTA
482513 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
1 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
482578 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
66 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
*
482643 AATGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
131 AAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
*
482708 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAATG
196 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
*
482773 CTTTCTTCCCACGAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
261 CTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
* * * *
482838 GTAAAGATCTTGTGTCAATTTGTGATTAGTGACTATAAACACATTGTCCACTTTGGGTTAAAGGA
326 GTAAAGATCTTCTGTCATTTTGTGATTAGTGACTATAAACACATTCTCCACTTTAGGTTAAAGGA
482903 TATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTTG
391 TATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTTG
482968 TCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAA
456 TCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAA
* *
483033 AAACATACTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCCT
521 AAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTT
483098 TCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCGAACGTGAATACTCATACTAA
586 TCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGC-AACGTGAATACTCATACTAA
* *
483163 TCACCATTCTATTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGAT
650 TCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGAT
*
483228 GCTTTGCTTTTGCAAGAAAGGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCCTGTA
715 GCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCCTGTA
* *
483293 ATGAGACAAATATCGTTTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACAT
780 ATGAGACAAATATGGATTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACAT
*
483358 TCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACAAAAATCTTTTCTTTTCCCTATT
845 TCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATT
*
483423 TTCCTTAAAACCAAAGTTGGTCCCCTCAATAAGGCATGTA
910 TTCCTTAAAACCAAAGTTGGTCCCCTCAATAAGGCAAGTA
483463 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
1 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
483528 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
66 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
*
483593 AATGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
131 AAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
*
483658 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAATG
196 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
*
483723 CTTTCTTCCCACGAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
261 CTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
* * *
483788 GTAAAGATCTTGTGTCATTTTGTGATTAGTGACTATAAACACATTGTCCACTTTGGGTTAAAGGA
326 GTAAAGATCTTCTGTCATTTTGTGATTAGTGACTATAAACACATTCTCCACTTTAGGTTAAAGGA
*
483853 TATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTTCTTAAAATCAAAGTTTG
391 TATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTTG
* * * *
483918 GCCCCTCAATAGGGCAAGCAATGATTCTTATAACAATCTCCATTCTTTTTAAAATTGAGAACCGA
456 TCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAA
483983 AAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTT
521 AAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTT
484048 TCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCGAACGTGAATACTCATACTAA
586 TCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGC-AACGTGAATACTCATACTAA
* *
484113 TCGCCATTCTATTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGAT
650 TCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGAT
* *
484178 GCTTTGCTTTTGCAAGAAACATTTTCTTCCCACCAAAACTTAGAAAGTCCAAGTTCGTGCCTGTA
715 GCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAG-T--T--C----
* *
484243 ATGAGATGCCTGTAATGAGACAAATATCGTTTCTAGTAAGGATGTTCATTCATTTTGTGATTAGG
771 ----G-TGCCTGTAATGAGACAAATATGGATTCTAGTAAGGATGTTCATTCATTTTGTGATTAGG
484308 CATTATAAACACATTCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACGAAAATCTT
831 CATTATAAACACATTCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACGAAAATCTT
*
484373 TTCTTTTCCCTATTTTCCTTAAAACCAAAGTTGGTCCCCTTAATAAGGCAAGTA
896 TTCTTTTCCCTATTTTCCTTAAAACCAAAGTTGGTCCCCTCAATAAGGCAAGTA
484427 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
1 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
484492 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
66 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
*
484557 AAAG-TTCTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
131 AAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
484621 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
196 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
***
484686 CTTTCTTCCCTTGAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
261 CTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
* * *
484751 GTAAAGATCTTCAGTCATTTTGTGATTAATGACTATAAACACATTCTCCACTTTGGGTTAAAGGA
326 GTAAAGATCTTCTGTCATTTTGTGATTAGTGACTATAAACACATTCTCCACTTTAGGTTAAAGGA
484816 TATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTTG
391 TATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTTG
484881 TCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAA
456 TCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAA
*
484946 AAACATATTCCCTTCATTAGGATACGTGACACTGGTGCTTTGGTGTCACAAGAGAAGCTTTTCTT
521 AAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTT
485011 TCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCGAACGTGAATACTCATACTAA
586 TCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGC-AACGTGAATACTCATACTAA
* *
485076 TCGCCATTCTATTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGAT
650 TCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGAT
*
485141 GCTTTGCTTTTGCAAGAAAC-TTTTCTTCCCACCAAAACTTAGAAAGTCCAAGTTCGTGCCTGTA
715 GCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAG-T--T--C----
* *
485205 ATGAGATGCCTGTAATGAGACAAATATCGTTTCTAGTAAGGATGTTCATTCATTTTGTGATTAGG
771 ----G-TGCCTGTAATGAGACAAATATGGATTCTAGTAAGGATGTTCATTCATTTTGTGATTAGG
485270 CATTATAAACACATTCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACGAAAATCTT
831 CATTATAAACACATTCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACGAAAATCTT
*
485335 TTCTTTTCCCTATTTTCCTTAAAACCAAAGTTGGTCCCCTTAATAAGGCAAGTA
896 TTCTTTTCCCTATTTTCCTTAAAACCAAAGTTGGTCCCCTCAATAAGGCAAGTA
485389 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
1 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
485454 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
66 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
* *
485519 AAAGTTTCTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTGTTCAAGATTA
131 AAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
485584 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
196 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
* *
485649 CTTTCTTCCCTCGAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
261 CTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
* * *
485714 GTAAAGATCTTCAGTCATTTTGTGATTAATGACTATAAACACATTCTCCACTTTGGGTTAAAGGA
326 GTAAAGATCTTCTGTCATTTTGTGATTAGTGACTATAAACACATTCTCCACTTTAGGTTAAAGGA
485779 TATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTTG
391 TATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTTG
485844 TCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAA
456 TCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAA
*
485909 AAACATACTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTT
521 AAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTT
485974 TCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCGAACGTGAATACTCATACTAA
586 TCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGC-AACGTGAATACTCATACTAA
* *
486039 TCGCCATTCTATTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGAT
650 TCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGAT
486104 GCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCCTGTA
715 GCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCCTGTA
* *
486169 ATGAGACAAATATCGTTTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACAT
780 ATGAGACAAATATGGATTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACAT
486234 TCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATT
845 TCTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATT
*
486299 TTCCTTAAAACCAAAGTTGGTCCCCTCAATAAGGCAAGCA
910 TTCCTTAAAACCAAAGTTGGTCCCCTCAATAAGGCAAGTA
*
486339 TTGATTCTTGTAACAGTCTCAATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
1 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
*
486404 ATACATGACATTGGTGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
66 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
486469 AAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
131 AAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
*
486534 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTTGTTTCGCAAGAAATG
196 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
*
486599 CTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTCTA
261 CTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
* *
486664 GTAAAGATCTTCAT-TCATTTTGTGATTAGTGACGATAAACACATTCTCCACATTAGGTTAAAGG
326 GTAAAGATCTTC-TGTCATTTTGTGATTAGTGACTATAAACACATTCTCCACTTTAGGTTAAAGG
* *
486728 ATATTGATGGTTTTCTTTGGCACGGAAATCTTTTCTTTACCCTATTTTTCTTAAAATCAAAGTTT
390 ATATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTT
* *
486793 CTCCCCTCAATAGGGCAAGCAATGATTCTTATAACAGTCTCCATTCTTTTTAAAATTGAGAACCA
455 GTCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCA
486858 AAAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCT
520 AAAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCT
* *
486923 TTCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTA
585 TTCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGC-AACGTGAATACTCATACTA
*
486988 ATCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAA-GATACATGATAATGA
649 ATCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGA
487052 TGCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCC-GC
714 TGCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCCTG-
* * * * *
487116 TAATGAGACAAATATGGATTCTAGTAAGGATCTTCTTTCATTTGGTGTTTAGTG-ACTATAAACA
778 TAATGAGACAAATATGGATTCTAGTAAGGATGTTCATTCATTTTGTGATTAG-GCATTATAAACA
* * * * * * * *
487180 CATTCTCCTTATTAGGATAAATGATATTAATGGTTTTCTTTGGCACGAAAATCTTGTCATTACCC
842 CATTCTCCTCATTCGGATAAATGATATTGATAG-TTTCTTTTGCACGAAAATCTTTTCTTTTCCC
* * ** * * *
487245 TATTTTTCTTAAAATCAAAGTTTATCTCCTCAATAGGGCAAGCA
906 TATTTTCCTTAAAACCAAAGTTGGTCCCCTCAATAAGGCAAGTA
* * * * * * * *
487289 TTTATTCTTGTAACAGTCACCATTCTTTTCAAAATTGAAAACCAAAAACACATTCCCTTCATTAG
1 TTGATTCTTGTAACAGTCTCCATT-TTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTG
* * * * *
487354 GATACATGGA-ATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAA
65 TATACAT-GACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAA
* ** * *
487418 TCAAAGTTTGTCTCTTAAATAAAACAAACATGAATACTTATA-G-TAATCCCA-ATTCTTTTCAG
129 TCAAAGTTTGTCTTTTGTATAAGACAAACATGAATAC-TA-ACGCTAAT-CCAGATTCTTTTCAA
* * * * * * *
487480 GATTAGGCACCACAAACACAGTTTTCTCATAAGGATGCACGATATTGATGCTTTTGTTTTGCAAG
191 GATTAGGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAG
* * * * ** * * * *
487545 AAACGCTTTCTTCCTACCAATTTTTCAACTGTCTAAGTTCATCCCTTAAATGAGACAAACATGGA
256 AAATGCTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGA
* ** * * *
487610 TTTTAGTAAGGATCTTCAATCATTTTGTGATTAG-GCACTATAAACACATTCTCCTCATTAGGAT
321 TTTTAGTAAAGATCTTCTGTCATTTTGTGATTAGTG-ACTATAAACACATTCTCCACTTTAGGTT
* * * * *
487674 AAATGATATTGATGGTTTTCTTTGGCAC-GAAAATCTTTTCATTGCCTTATGTTCCTTAAAATCA
385 AAAGGATATTGATGGTTTTCTTTGGCACAG-AAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
*
487738 AAGTTTGTCCCCTTAATATGGTAAGCTTTGATTCTTATGACAGTCTCCATTCTTTTCTAAGCTTT
449 AAGTTTGTCCCCTCAATA--G---G----G---C-----A-AG-------------C-AA----T
* ** *
487803 GATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAGAACCAAAAACCCATTCGCTTCATTAGGA
478 GATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAAAAACATATTCCCTTCATTAGGA
* * * * ** * * *
487868 TACATGACATTGATGCTTTGTTGTCGCAAGAGAAGCTTTTCTTTCCATCTTTAATGATAGAATCA
543 TACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCGCCGTTATTGATAAAATCA
* * * * * * *
487933 AAGTTTGTCTTTTAAATAAGACAAACATGAATACTAATACTAATCCGCTTTCTTTTCAGGATTA-
608 AAGTTTGTCTCTTAAATAAGGC-AACGTGAATACTCATACTAATCCCCATTCTTTTTAGGATTAG
* * * * * * * *
487997 GCACCATACACATAGTCTTCTCATAAGGATACA-CATGTTGATCCTTTGGTTTTGCAAGAAACAC
672 GCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCAAGAAAC-G
** ** * * ** * ** * * * *
488061 TTTT-TTTGCACC-AATTTTTGTAAATTCTAAGTTTATGTCTCAAATAAGGCAAAGAAGGATTCT
736 TTTTCTTCCCACCAAAACTTAG-AAAGTCTAAGTTCGTGCCTGTAATGAGACAAATATGGATTCT
* * * * * *
488124 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAATACATTCTCTTCATTAGGATAAATG
800 AGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACATTCTCCTCATTCGGATAAATG
* *
488189 ATAGTGATAGTTTCTTTTGCATGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAACCAAAGTTGG
865 ATATTGATAGTTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATTTTCCTTAAAACCAAAGTTGG
* *
488254 T-CCCTCAATAAGGCAGGCA
930 TCCCCTCAATAAGGCAAGTA
* * *
488273 TTGATTCTTTTAATAGTCTCCATTTTTTCAAAATTGAGAACCTAAAAGATATTCCTTTAATTTGT
1 TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
* * * ** * * *
488338 ACACGTGACGTTGATGCTTTGGGGTTGCAAGAGAAGCTTTTCTTTCCACCTTTATTGATAGAATC
66 ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
* * *
488403 AAAGTTTGTCTTTTATATAAGACAAACATGAATACTAATGCTAATCCAGATTCTTTTCAAGATTT
131 AAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
*
488468 GGCACCATAAACATAACCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
196 GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
* * * *
488533 CTTTTTTCCCACCAAA-TTTAGAAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCT
261 CTTTCTTCCCACCAAATTTTA-AAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTT
* *
488597 AGTAAGGATCTTCAT-TCATTTTGTGATTAGTGACTATAAACACATTCTCCACATTAGGTTAAAG
325 AGTAAAGATCTTC-TGTCATTTTGTGATTAGTGACTATAAACACATTCTCCACTTTAGGTTAAAG
* **
488661 GATATTAATGGTTTTCTTCAGCAC-GAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGT
389 GATATTGATGGTTTTCTTTGGCACAG-AAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGT
488725 TTGTCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATT-TTTTTAAAAATTGAGAA
453 TTGTCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTT-AAAATTGAGAA
* * *
488789 CCAAAAACATATTCTCTTCATTAGGATACGTGACATTGATGCTTTGGTGTCACAAGAAAAGCTTT
517 CCAAAAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTT
* * *
488854 TCTTTTCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTACATAAGGCAAACATGAATACTCATA
582 TCTTTCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGC-AACGTGAATACTCATA
* * *
488919 CTAATCCCCATTCTTTTCAGGATTAAGCACCATAAACATAGCCTTCTCATAAGGATACATGATAT
646 CTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATAT
* *
488984 TGATGCTTTGCTTTTGCAAGAAACGTTTTCTTCACACCAAAACTTAGAAAGTCTAAGTCCGTGCC
711 TGATGCTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCC
* * * * * *
489049 TCTAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTGGTGATTAGTG-ACTATAAA
776 TGTAATGAGACAAATATGGATTCTAGTAAGGATGTTCATTCATTTTGTGATTAG-GCATTATAAA
* *
489113 CACATTCTCCTTATTAGGATA
840 CACATTCTCCTCATTCGGATA
489134 TGTTAGGATC
Statistics
Matches: 8820, Mismatches: 539, Indels: 328
0.91 0.06 0.03
Matches are distributed among these distances:
946 14 0.00
947 170 0.02
948 39 0.00
949 1185 0.13
950 3032 0.34
951 387 0.04
952 11 0.00
953 4 0.00
955 5 0.00
956 2 0.00
957 3 0.00
959 1 0.00
960 1 0.00
961 5 0.00
962 362 0.04
963 1186 0.13
964 342 0.04
965 3 0.00
966 2 0.00
968 2 0.00
969 3 0.00
971 5 0.00
972 1 0.00
974 1 0.00
975 3 0.00
976 3 0.00
977 3 0.00
978 2 0.00
980 2 0.00
981 17 0.00
982 485 0.05
983 424 0.05
984 41 0.00
985 82 0.01
986 796 0.09
987 196 0.02
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (949 bp):
TTGATTCTTGTAACAGTCTCCATTTTTTCAAAATTGAGAACCTAAAACATATTCCTTTAATTTGT
ATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTTTCACCGTTATTGATAGAATC
AAAGTTTGTCTTTTGTATAAGACAAACATGAATACTAACGCTAATCCAGATTCTTTTCAAGATTA
GGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAATG
CTTTCTTCCCACCAAATTTTAAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTTTA
GTAAAGATCTTCTGTCATTTTGTGATTAGTGACTATAAACACATTCTCCACTTTAGGTTAAAGGA
TATTGATGGTTTTCTTTGGCACAGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTTG
TCCCCTCAATAGGGCAAGCAATGATTCTTGTAACAGTCTCCATTCTTTTTAAAATTGAGAACCAA
AAACATATTCCCTTCATTAGGATACGTGACACTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTT
TCCGCCGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAACGTGAATACTCATACTAAT
CCCCATTCTTTTTAGGATTAGGCACCATAAAGATAGCCTTCTCATAAGGATACATGATATTGATG
CTTTGCTTTTGCAAGAAACGTTTTCTTCCCACCAAAACTTAGAAAGTCTAAGTTCGTGCCTGTAA
TGAGACAAATATGGATTCTAGTAAGGATGTTCATTCATTTTGTGATTAGGCATTATAAACACATT
CTCCTCATTCGGATAAATGATATTGATAGTTTCTTTTGCACGAAAATCTTTTCTTTTCCCTATTT
TCCTTAAAACCAAAGTTGGTCCCCTCAATAAGGCAAGTA
Found at i:484254 original size:14 final size:14
Alignment explanation
Indices: 484235--484262 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
484225 TCCAAGTTCG
484235 TGCCTGTAATGAGA
1 TGCCTGTAATGAGA
484249 TGCCTGTAATGAGA
1 TGCCTGTAATGAGA
484263 CAAATATCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (14 bp):
TGCCTGTAATGAGA
Found at i:485216 original size:14 final size:14
Alignment explanation
Indices: 485197--485224 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
485187 TCCAAGTTCG
485197 TGCCTGTAATGAGA
1 TGCCTGTAATGAGA
485211 TGCCTGTAATGAGA
1 TGCCTGTAATGAGA
485225 CAAATATCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29
Consensus pattern (14 bp):
TGCCTGTAATGAGA
Found at i:487806 original size:36 final size:36
Alignment explanation
Indices: 487759--487830 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
487749 CTTAATATGG
*
487759 TAAGCTTTGATTCTTATGACAGTCTCCATTCTTTTC
1 TAAGCTTTGATTCTTATAACAGTCTCCATTCTTTTC
*
487795 TAAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTC
1 TAAGCTTTGATTCTTATAACAGTCTCCATTCTTTTC
487831 AAAATTGAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.19, C:0.22, G:0.11, T:0.47
Consensus pattern (36 bp):
TAAGCTTTGATTCTTATAACAGTCTCCATTCTTTTC
Found at i:489534 original size:13 final size:13
Alignment explanation
Indices: 489513--489543 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
489503 TGATACATGG
*
489513 TACAATGTATCGA
1 TACATTGTATCGA
489526 TACATTGTATCGA
1 TACATTGTATCGA
489539 TACAT
1 TACAT
489544 AGCTTGTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:493073 original size:13 final size:13
Alignment explanation
Indices: 493055--493080 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
493045 TACACCAAGT
493055 ATGTATCGATACA
1 ATGTATCGATACA
493068 ATGTATCGATACA
1 ATGTATCGATACA
493081 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:493078 original size:32 final size:33
Alignment explanation
Indices: 493037--493100 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
493027 TAGCCAAACT
* **
493037 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
493069 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
493101 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:496761 original size:13 final size:13
Alignment explanation
Indices: 496743--496767 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
496733 TTTTCTAGAT
496743 TGTATCGATACAA
1 TGTATCGATACAA
496756 TGTATCGATACA
1 TGTATCGATACA
496768 TTACTTCAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:498676 original size:13 final size:13
Alignment explanation
Indices: 498658--498683 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
498648 TACACCAAGT
498658 ATGTATCGATACA
1 ATGTATCGATACA
498671 ATGTATCGATACA
1 ATGTATCGATACA
498684 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:498681 original size:32 final size:33
Alignment explanation
Indices: 498640--498703 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
498630 TAGCCAAACT
* **
498640 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
498672 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
498704 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:505841 original size:13 final size:13
Alignment explanation
Indices: 505823--505848 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
505813 TACACCAAGT
505823 ATGTATCGATACA
1 ATGTATCGATACA
505836 ATGTATCGATACA
1 ATGTATCGATACA
505849 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:505846 original size:32 final size:33
Alignment explanation
Indices: 505805--505868 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
505795 TAGCTAAACT
**
505805 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
505837 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
505869 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:508100 original size:21 final size:21
Alignment explanation
Indices: 508067--508111 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
508057 TTGCAAGTTG
*
508067 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
508089 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
508109 AAA
1 AAA
508112 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:509934 original size:15 final size:16
Alignment explanation
Indices: 509912--509949 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
509902 GATAAAAATG
*
509912 TCCAAAATGAGGAAGC
1 TCCAAAATGAAGAAGC
509928 T-CAAAATGAAGAAGC
1 TCCAAAATGAAGAAGC
509943 TCCAAAA
1 TCCAAAA
509950 GAAATTGATG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 14 0.70
16 6 0.30
ACGTcount: A:0.50, C:0.18, G:0.18, T:0.13
Consensus pattern (16 bp):
TCCAAAATGAAGAAGC
Found at i:512042 original size:13 final size:13
Alignment explanation
Indices: 512024--512049 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
512014 ACATTTTTCT
512024 TTGTATCGATACA
1 TTGTATCGATACA
512037 TTGTATCGATACA
1 TTGTATCGATACA
512050 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:512213 original size:20 final size:20
Alignment explanation
Indices: 512170--512215 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
512160 AAATCTTTTG
512170 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
512191 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
512211 CAAAA
1 CAAAA
512216 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:516801 original size:511 final size:510
Alignment explanation
Indices: 515833--516821 Score: 1457
Period size: 511 Copynumber: 1.9 Consensus size: 510
515823 TCAATAGGGC
* *
515833 AAGCATTTATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAAAACCAAAAACACATTCCCTTC
1 AAGCATTTATTCTTGTAACAGTCTCCATTATTTTCAAAATTGAAAACCAAAAACACATTCACTTC
* * *
515898 ATTAGGATATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGTTATTGATAG
66 ATTAGGATAAGACATTGATGCCTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGTTAATGATAG
* * *
515963 AATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTTATAGTAATCCTAATTCTTTTCAGG
131 AATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCAATTCTTTTCAGG
* *
516028 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTAGATTCGCAGGA
196 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGCTTTAGATTCGCAAGA
* * * * * * *
516093 GAGGCTTTCTTTCGACTAATTTTTAAAAAGTCTAATTTCATGCCTTAAATCAGACAAACATGGAT
261 AAGCCTTTCTTACCACCAATTTTTAAAAAGTCTAATTTCATGCCTCAAATCAGACAAACACGGAT
* *
516158 TCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAA
326 TCTAATAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTATTAGGATAA
516223 ATGATATTAATGGATTTCTTTGGCACAAAAATCATTTCATTGCCCTATTTTCCTTAAAATCAAAG
391 ATGATATTAATGGATTTCTTTGGCACAAAAATCATTTCATTGCCCTATTTTCCTTAAAATCAAAG
* *
516288 TTTGTCCCCTCAATAGGGTAAGCTTTGATTCTTGTGATAGCCTCCGCTCTTTTCA
456 TTTCTCCCCTCAATAGGGCAAGCTTTGATTCTTGTGATAGCCTCCGCTCTTTTCA
* *
516343 AAGC-TTTGATTCTTGTAACGGTCTCCATTATTTTCAAAATTGAGAACCAAAAACACATTCACTT
1 AAGCATTT-ATTCTTGTAACAGTCTCCATTATTTTCAAAATTGAAAACCAAAAACACATTCACTT
* * * * *
516407 -TTTCAGGATACAAGACATTGATGCCTTGTTGTCATAAGAGAAGCTTTTCTTTCCATCTTTAATG
65 CATT-AGGAT--AAGACATTGATGCCTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGTTAATG
* **
516471 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCTTTCTTTT
127 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCAATTCTTTT
* * *
516536 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA-CATATTGATGCTTTGGTTTTGC
192 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGCTTTAGATTCGC
** * * * * *
516600 AAGAAATGCCTTT-TTACCACCAATTTTTGTAAATTCTAAGTTT-GTGGCTCAAATTAGACAAAG
257 AAGAAA-GCCTTTCTTACCACCAATTTTTAAAAAGTCTAA-TTTCATGCCTCAAATCAGACAAAC
*
516663 ACGGATTCTAATAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTATTA
320 ACGGATTCTAATAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTATTA
* * ** * *
516728 GGATAAATGATATTGATGGTTTTCTTTGGCATTAAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
385 GGATAAATGATATTAATGGATTTCTTTGGCACAAAAATCATTTCATTGCCCTATTTTCCTTAAAA
516793 TCAAAGTTTCTCCCCTCAATAGGGCAAGC
450 TCAAAGTTTCTCCCCTCAATAGGGCAAGC
516822 ATTTCTTCTT
Statistics
Matches: 425, Mismatches: 48, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
509 5 0.01
510 61 0.14
511 204 0.48
512 155 0.36
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (510 bp):
AAGCATTTATTCTTGTAACAGTCTCCATTATTTTCAAAATTGAAAACCAAAAACACATTCACTTC
ATTAGGATAAGACATTGATGCCTTGGTGTCACAAGAGAAGCTTTTCTTTCCACCGTTAATGATAG
AATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCAATTCTTTTCAGG
ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGCTTTAGATTCGCAAGA
AAGCCTTTCTTACCACCAATTTTTAAAAAGTCTAATTTCATGCCTCAAATCAGACAAACACGGAT
TCTAATAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTTATTAGGATAA
ATGATATTAATGGATTTCTTTGGCACAAAAATCATTTCATTGCCCTATTTTCCTTAAAATCAAAG
TTTCTCCCCTCAATAGGGCAAGCTTTGATTCTTGTGATAGCCTCCGCTCTTTTCA
Found at i:517238 original size:36 final size:36
Alignment explanation
Indices: 517165--517238 Score: 112
Period size: 36 Copynumber: 2.1 Consensus size: 36
517155 TCAACAGGGT
* *
517165 AAGCTTTGATTCTTGTAATAGTCTCCATTCTTTTCA
1 AAGCTTTGATTCTTGTAATAGTCTCCACTCTTGTCA
* *
517201 AAGCTTTGGTTCTTGTAATAGTCTCTACTCTTGTCA
1 AAGCTTTGATTCTTGTAATAGTCTCCACTCTTGTCA
517237 AA
1 AA
517239 ATTGAGAACC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.45
Consensus pattern (36 bp):
AAGCTTTGATTCTTGTAATAGTCTCCACTCTTGTCA
Found at i:518332 original size:476 final size:475
Alignment explanation
Indices: 517201--519951 Score: 3217
Period size: 476 Copynumber: 5.8 Consensus size: 475
517191 ATTCTTTTCA
* * * * * * **
517201 AAGCTTTGGTTCTTGTAATAGTCTCTACTCTTGTCAAAATTGAGAACCAAAAACACATTAACTTT
1 AAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAGAACCAAAAACACATTCCCTTT
* * * * **
517266 ATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAGAAGCTTTTCTTTTCATCTTTAAAGAT
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGAT
* * * * * *
517331 AGAGTTAAAGTTTATCTCTGAAATAAGACAAACATGAATACTCATACTAATCCCCAATCTTTTCA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCA
** * * * * * *
517396 GGATTAGGCACCACCAACCTAGTCTTCTCATAAAGATGCATGATGTTGATGCTTTGGTTTCACAA
196 GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
* *
517461 GAAAC-ATTTTTTCCCACTAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGG
261 GAAACGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGG
* *
517525 ATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCGTTAGGAT
326 ATTCTAGTAAAGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
* * * * *
517590 AAATGATATTGATAG-TTTCTTTTGCATGAAAATATTTTCTTTT-CCCTCTTTTCCTTAAAACCA
391 AAATGATATTGATGGTTTTC-TTTGCACGGAAATATTTT-TTTTGCCCTATTTTCCTTAAAATCA
* *
517653 AAGTTGGTCCCCTTAATAAGGC
454 AAGTTTGTCCCCTAAATAAGGC
* * *
517675 AGGCATTGATTCTTGTAACAGTCTCCATT-TTTTCAAAATTGAGAACCTAAAACATATT-CCTTT
1 AAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAGAACCAAAAACACATTCCCTTT
* * * * *
517738 AATTTGTATACGTGACATTAATGCTTTGGGGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGA
66 -ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGA
* * * * *
517803 TAGAATCAAAGTTTGTCTTTTATATAAGACAAACATGAATACTAATGCTAATCCAGATTCTTTTC
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTC
* * *
517868 AAGATAAGGCACCATAAACATAATCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
195 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* * * ** *
517933 AGAAATGCTTTCTTACCACTAAATTTTGAAAAGTCTAAGTCCGTGCCTCAAAAGAGACAAACATG
260 AGAAACGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATG
* * * * * *
517998 GATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGGACTAAAAACATATTCTCCACATTAGGT
325 GATTCTAGTAAAGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * *
518063 TAAAGGATATTGATGGTTTTCTTTGCCACGGAAATCTTTTTTTTACCCTATTTTCCTTAAAATCA
390 TAAATGATATTGATGGTTTTCTTTG-CACGGAAATATTTTTTTTGCCCTATTTTCCTTAAAATCA
* *
518128 AAGTTTGTCCCCTCAAT-AGTAC
454 AAGTTTGTCCCCTAAATAAG-GC
* * * * *
518150 AAGCAATGATTCTTGTAACAGTCTCCATTCTTTTAAAAATTGAGAACCAAAAACATATTTCCTTC
1 AAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAGAACCAAAAACACATTCCCTTT
* * * **
518215 ATTAGGATACGTGACATTGATGCTTTGGTGTCAG-AAGTGAAGCTTTTCTTTCCGCCACTATTGA
66 ATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAGAAGCTTTTCTTTCCACCGTTATTGA
* * * *
518279 TAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAATACTCATACTAATCCCCATTCTTTTT
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTC
* * * * *
518344 AGGATTACGCACCATAAACATAGCCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTTGCA
195 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCA
* *
518409 AGAAACGTTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATC
260 AGAAACGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATG
* *
518474 GATTCT-GGAAAGGATCTTCATTCATTTCGTGACTAGGCACTATAAACACATTCTCCTCATTAGG
325 GATTCTAGTAAA-GATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * * *
518538 ATAAATGATATTGATGATTTTGTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATC
389 ATAAATGATATTGATGGTTTT-CTTTGCACGGAAATATTTTTTTTGCCCTATTTTCCTTAAAATC
*
518603 AAAGTTTG-ACCCTAAAATAAGGC
453 AAAGTTTGTCCCCT-AAATAAGGC
* ** * * * * **
518626 AGGCATTGATTCTCATAATAGTCTCCATTCTTTCCAAGATT-AGGAACCAAGAATGCATTCCCTT
1 AAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGA-GAACCAAAAACACATTCCCTT
* *
518690 TATTAGGATGCATGACATTGATGCTTTGGTGTTGCAAGA-ACAGCTTTTCTTTCCACCGTTATTG
65 TATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA-AGCTTTTCTTTCCACCGTTATTG
* * *
518754 ATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATAAATACTCATACTAATCC-CAAATCTTT
129 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCAC-ATTCTTT
* * *
518818 TCAGGATTAGGTACCATAAACATACTCTTCTCATGAGGATAC-CTGATATTGATGCTTTGGTTTC
193 TCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC-GATATTGATGCTTTGGTTTC
* * * * * * * *
518882 GCAAGAAACGCTTCCTTTCCACCAACTTTTGTAAAGTATAAGTTCGTTCCTCAAATGAGACAAAC
257 GCAAGAAACGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAC
* * * * *
518947 ATGGATTCTAGTAAGGATCTTCATTTATTTTGTCATTAGGCACTATAAACACATTCTCCTCTTTA
322 ATGGATTCTAGTAAAGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTA
* * * *
519012 GGATAAATGATATTGATGATTTTCTTTTGCA-TGAAATTATTTTCTTTGCCCTAGTTTCCTTAAA
387 GGATAAATGATATTGATGGTTTTC-TTTGCACGGAAA-TATTTTTTTTGCCCTATTTTCCTTAAA
* *
519076 ATCAAAGTTTG-ACCCTAAAATAAGAC
450 ATCAAAGTTTGTCCCCT-AAATAAGGC
** * * * * ** * * *
519102 AAGCATTGATTCTCATAATAGTCACCATCCTTTCCAAGGTTGGGAACCAAGAACACCTTCCCTTT
1 AAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAGAACCAAAAACACATTCCCTTT
* * * * * *
519167 ATTAGGATACATGACATTGATTCTTTGGGGTTGTAAGAGTAGCTATTCTTTCCACCGTTATTGAT
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGAT
* * * *
519232 GGAATCAAAGTTTGTCT-TTGAAATATGAGAAACATGAATACTCATACTAATCCCCATTCTTTTC
131 AGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTC
* * * **
519296 AGGATTAGGCACCATAAAAATAGTCTTCTCAT-AGTGATACACGATA-TGATGATTTGGCTTCAA
195 AGGATTAGGCACCATAAACATAGTCTTCTCATAAG-GATACACGATATTGATGCTTTGGTTTCGC
* * * *
519359 AAGAAACGCTTTCTTCCC-CATAATTTTTGAAAAGTTTAAGTTTATGCCTCCAATGAGACAAATA
259 AAGAAACGCTTTCTTCCCAC-TAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACA
* *
519423 TAGATTCTAGTAAAGATCTTCATTCATTTCGTG-TTAGGCACGATAAACACATTCTCCTCATTAG
323 TGGATTCTAGTAAAGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAG
* * * ** * *
519487 TATAAATGACATTGGTGGTTTTCTTTGGCACAAAAATCTTTTTTTTTTGCCCTATTTTACTTAAA
388 GATAAATGATATTGATGGTTTTCTTT-GCACGGAAA--TATTTTTTTTGCCCTATTTTCCTTAAA
* *
519552 ATCAAAGTTTGTCCCTTCAATAAGGC
450 ATCAAAGTTTGTCCCCTAAATAAGGC
* * * *
519578 AAGCATTGATTCTTGTAACAGCCTCTATTCTTTTCAAAATTGAGAACCAAAAACAAATTCCCTTC
1 AAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAGAACCAAAAACACATTCCCTTT
* **
519643 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGTTTTTCTTTCCACTATTATTGAT
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGAT
* * * * * * *
519708 GGAATCTAAGTATGTCTCTCAAATAAGACAAACACGTATGCTCATACTAATCC-CAATTCTTTTC
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCAC-ATTCTTTTC
* * * * * * * * *
519772 AGAATTAGGCTCCATAAATAT-GTTCTTCTGATTATGATACATGATATTGATGATTTGGTTTTGC
195 AGGATTAGGCACCATAAACATAG-TCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* * * * * *
519836 AAGAAACGCTTTTTTCCCACCAA-TTTTGTAAATTCTAAGTTTGTGCCTCAAATGAAAAAAACAT
259 AAGAAACGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACAT
* * * * * *
519900 GGATTCTCGTAAGGATCTTTATTCTTTTAGTGATTAGGCACTATAAATACAT
324 GGATTCTAGTAAAGATCTTCATTCATTTCGTGATTAGGCACTATAAACACAT
519952 ATTTTCTTTG
Statistics
Matches: 1937, Mismatches: 301, Indels: 75
0.84 0.13 0.03
Matches are distributed among these distances:
472 4 0.00
473 195 0.10
474 207 0.11
475 192 0.10
476 1268 0.65
477 70 0.04
478 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (475 bp):
AAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAGAACCAAAAACACATTCCCTTT
ATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGAT
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCA
GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
GAAACGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGG
ATTCTAGTAAAGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
AAATGATATTGATGGTTTTCTTTGCACGGAAATATTTTTTTTGCCCTATTTTCCTTAAAATCAAA
GTTTGTCCCCTAAATAAGGC
Found at i:518695 original size:159 final size:158
Alignment explanation
Indices: 518109--519187 Score: 450
Period size: 159 Copynumber: 6.8 Consensus size: 158
518099 TTTTTTTTAC
* * * * ** *
518109 CCTATTTTCCTTAAAATCAAAGTTTGTCCCCT-CAAT-AGTACAAGCAATGATTCTTGTAACAGT
1 CCTATTTT-CTTAAAATCAAAGTTTG-ACCCTAAAATAAG-ACAAACATTGATTCTCATAATAGT
** * * * * * * *
518172 CTCCATTCTTTTAAAAATT-GAGAACCAAAAACATATTTCCTTCATTAGGATACGTGACATTGAT
63 CTCCATTCTTTCCAAGATTAG-GAACCATAAACACATTCCCTTTATTAGGATACATGATATTGAT
* ** * ** *
518236 GCTTTGGTGTCAG-AAGTGAAGCTTTTCTTTCCG
127 GATTTGGT-TTTGCAAG-AAATATTTTCTTTCCA
* ** * * * * * * *
518269 CC-ACTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACA-TGAATACTCATACTAATC
1 CCTA-TTTTCTTAAAATCAAAGTTTGACCCTAAAATAAGACAAACATTG-ATTCTCATAATAGTC
* ** * * * ** *
518332 CCCATTCTTTTTAGGATTACGCACCAT-AA-ACATAGCCTTCTCATAAGGATACATGATATTGAT
64 TCCATTCTTTCCAAGATTAGGAACCATAAACACATTCCCTT-T-ATTAGGATACATGATATTGAT
* * ** *
518395 GCTTTGCTTTTGCAAGAAACGTTTTCTTCCCA
127 GATTTGGTTTTGCAAGAAATATTTTCTTTCCA
* * ** * * * * *
518427 -CTAATTTT-TGAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATCGATTCTGGA-AA-GGA
1 CCT-ATTTTCTTAAAA-TCAAAGTTTGACCCTAAAATAAGACAAACATTGATTCT-CATAATAG-
* ** * * * * *
518488 TCTTCATTCATTT-CGTGACTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATATTG
62 TCTCCATTC-TTTCCAAGATTAGGAACCATAAACACATTC-CCTTTATTAGGATACATGATATTG
* * *
518551 ATGATTTTGTTTTGCATGGAAATATTTTCTTTGC-
125 ATGATTTGGTTTTGCA-AGAAATATTTTCTTTCCA
* **
518585 CCTATTTTCCTTAAAATCAAAGTTTGACCCTAAAATAAGGCAGGCATTGATTCTCATAATAGTCT
1 CCTATTTT-CTTAAAATCAAAGTTTGACCCTAAAATAAGACAAACATTGATTCTCATAATAGTCT
** * * *
518650 CCATTCTTTCCAAGATTAGGAACCA-AGAATGCATTCCCTTTATTAGGATGCATGACATTGATGC
65 CCATTCTTTCCAAGATTAGGAACCATA-AACACATTCCCTTTATTAGGATACATGATATTGATGA
* **
518714 TTTGGTGTTGCAAGAACAGCTTTTCTTTCCA
129 TTTGGTTTTGCAAGAA-ATATTTTCTTTCCA
* ** * * * ** * * *
518745 CCGT-TATTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATAAATACTCATACTAATC-
1 CC-TATTTTCTTAAAATCAAAGTTTGACCCTAAAATAAGACAAACATTGATTCTCATAATAGTCT
* * * * * * * *
518808 CCAAATCTTTTCAGGATTAGGTACCAT-AA-ACATACTCTTCTCATGAGGATACCTGATATTGAT
65 CC-ATTCTTTCCAAGATTAGGAACCATAAACACATTCCCTT-T-ATTAGGATACATGATATTGAT
* * *** *
518871 GCTTTGGTTTCGCAAGAAACGCTTCCTTTCCA
127 GATTTGGTTTTGCAAGAAATATTTTCTTTCCA
* * * * ** * * * *
518903 CCAACTTTT-GTAAAGT-ATAAGTTCGTTCCTCAAATGAGACAAACATGGATTCT-AGTAA-GGA
1 CCTA-TTTTCTTAAAATCA-AAGTTTGACCCTAAAATAAGACAAACATTGATTCTCA-TAATAG-
* ***** * * * *
518964 TCTTCATT-TATTTTGTCATTAGGCACTATAAACACATTCTCCTCT-TTAGGATAAATGATATTG
62 TCTCCATTCT-TTCCAAGATTAGGAACCATAAACACATTC-CCTTTATTAGGATACATGATATTG
** * *
519027 ATGATTTTCTTTTGCATGAAATTATTTTCTTTGC-
125 ATGATTTGGTTTTGCAAGAAA-TATTTTCTTTCCA
* * *
519061 CCTAGTTTCCTTAAAATCAAAGTTTGACCCTAAAATAAGACAAGCATTGATTCTCATAATAGTCA
1 CCTA-TTTTCTTAAAATCAAAGTTTGACCCTAAAATAAGACAAACATTGATTCTCATAATAGTCT
* * * * *
519126 CCATCCTTTCCAAGGTTGGGAACCA-AGAACACCTTCCCTTTATTAGGATACATGACATTGAT
65 CCATTCTTTCCAAGATTAGGAACCATA-AACACATTCCCTTTATTAGGATACATGATATTGAT
519188 TCTTTGGGGT
Statistics
Matches: 664, Mismatches: 203, Indels: 105
0.68 0.21 0.11
Matches are distributed among these distances:
157 22 0.03
158 223 0.34
159 381 0.57
160 33 0.05
161 5 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (158 bp):
CCTATTTTCTTAAAATCAAAGTTTGACCCTAAAATAAGACAAACATTGATTCTCATAATAGTCTC
CATTCTTTCCAAGATTAGGAACCATAAACACATTCCCTTTATTAGGATACATGATATTGATGATT
TGGTTTTGCAAGAAATATTTTCTTTCCA
Found at i:520688 original size:374 final size:374
Alignment explanation
Indices: 520003--520719 Score: 937
Period size: 374 Copynumber: 1.9 Consensus size: 374
519993 TTCAATAGGG
* * * * * * *
520003 CAAGCATTGATTCTTGTAACAGTCTCCATCCTTTTTAAGATTGGGAACTAAGAACACCTTCCATT
1 CAAGCATTGATTCTCGTAACAGTCTCCATCCTTTTCAAAATTGAGAACCAAAAACACATTCCATT
* * ** *
520068 TATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAGCAGCTCTTCTTTCCACCGTTACTGA
66 CATTAGGATACATGACATTGATGCTTTGGTCTCACAAGAGAAGCTCTTCTTTCCACCGTTACTGA
* * * * *
520133 TAGATTCGAAGCTTGTCTTTGAAATAAGAGAAGCATGAATACGTATACTAATCCCAATTCTTCTC
131 TAAAATCGAAGCTTGACTTTGAAATAAGAGAAACATGAATACGCATACTAATCCCAATTCTTCTC
* *
520198 AAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGAA
196 AAGATTAGGCACCATAAACATACTCTTCTCATAAGGATACACGATATTGATGCTGTGGTTTTGAA
* *
520263 AGAAACCCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTTCTGCCTCAAATAAGACAAACAAA
261 AGAAACCCTTTCTTCCCACCAATTTTTGAAAAGTATAAGTTTCTGCCTCAAATAAGACAAACAAA
*
520328 GATTTTAGAAAGGATCTTAAATAAGTCAAAGTTTGACCCTTAAATAAGA
326 GATTCTAGAAAGGATCTTAAATAAGTCAAAGTTTGACCCTTAAATAAGA
* *
520377 CAAGCATTGATTCTCGTAATAGTCTCCAAT-CTTTTCAAAATTGAGAACCAAAAACACATTCCCT
1 CAAGCATTGATTCTCGTAACAGTCTCC-ATCCTTTTCAAAATTGAGAACCAAAAACACATTCCAT
* * * *
520441 TCATTAGGATATATGACATTGATGCTTTGGTCTCACAAGATAAGCTTTTCTTTCCACCGTTATTG
65 TCATTAGGATACATGACATTGATGCTTTGGTCTCACAAGAGAAGCTCTTCTTTCCACCGTTACTG
520506 ATAAAATC-AATG-TGTGACTCTT-AAATAAG-GCAAACATGAATA-GACATACTAATCCCCAA-
130 ATAAAATCGAA-GCT-TGACT-TTGAAATAAGAG-AAACATGAATACG-CATACTAAT-CCCAAT
* * ** *
520565 TCTTTTCAGGATTAGGTGCCATAAACATACTCTTCTCATAAGGATACATGATATTGATGCTGTGG
189 TCTTCTCAAGATTAGGCACCATAAACATACTCTTCTCATAAGGATACACGATATTGATGCTGTGG
* ** * * *
520630 TTTTGTAAGAAATGCTTTCTTCCCACCAATTTTTGTAAAGTATAAG-TTCATTCCTCAAATGAGA
254 TTTTGAAAGAAACCCTTTCTTCCCACCAATTTTTGAAAAGTATAAGTTTC-TGCCTCAAATAAGA
* *
520694 CAAACATAGATTCTAGTAAGGATCTT
318 CAAACAAAGATTCTAGAAAGGATCTT
520720 CATTCATTTT
Statistics
Matches: 294, Mismatches: 41, Indels: 16
0.84 0.12 0.05
Matches are distributed among these distances:
373 8 0.03
374 277 0.94
375 9 0.03
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.33
Consensus pattern (374 bp):
CAAGCATTGATTCTCGTAACAGTCTCCATCCTTTTCAAAATTGAGAACCAAAAACACATTCCATT
CATTAGGATACATGACATTGATGCTTTGGTCTCACAAGAGAAGCTCTTCTTTCCACCGTTACTGA
TAAAATCGAAGCTTGACTTTGAAATAAGAGAAACATGAATACGCATACTAATCCCAATTCTTCTC
AAGATTAGGCACCATAAACATACTCTTCTCATAAGGATACACGATATTGATGCTGTGGTTTTGAA
AGAAACCCTTTCTTCCCACCAATTTTTGAAAAGTATAAGTTTCTGCCTCAAATAAGACAAACAAA
GATTCTAGAAAGGATCTTAAATAAGTCAAAGTTTGACCCTTAAATAAGA
Found at i:521206 original size:402 final size:401
Alignment explanation
Indices: 520457--521240 Score: 1095
Period size: 402 Copynumber: 2.0 Consensus size: 401
520447 GGATATATGA
* * * *
520457 CATTGATGCTTTGGTCTCACAAGATAAGCTTTTCTTTCCACCGTTATTGATAAAATCAATGTGTG
1 CATTGATGCTTTGGGCTCACAAGAGAAACTTTTCTTTCCACCGTTATTGATAAAATCAAAGTGTG
* * *
520522 ACTCTTAAATAAGGCAAACATGAATAGACATACTAATCCCCAATCTTTTCAGGATTAGGTGCCAT
66 ACTCTTAAATAAGACAAACATGAAAACACATACTAATCCCCAATCTTTTCAGGATTAGGTGCCAT
* *** *
520587 AAACATACTCTTCTCATAAGGATACATGATATTGATGCTGTGGTTTTGTAAGAAATGCTTTCTTC
131 AAACATACTCTTCTCATAAGGATACACGATATTGATGCTGTGGTTTCACAAGAAACGCTTTCTTC
* * *
520652 CCACCAATTTTTGTAAAGTATAAGTTCATTCCTCAAATGAGACAAACATAGATTCTAGTAAGGAT
196 CCACCAATTTTTGAAAAGTATAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGCAAGGAT
* * *
520717 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTAATAGGATAAATGATATTGATG
261 CTTCATTCATTTTGCGATTACGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATG
* * * *
520782 GTTTTTTTCAGCATGGAAATCTTTTTTTTCCCTTATTTTCCTTAAAAATCAAAGTTTGATCCTAA
326 GTTTTTTTCAGCATGAAAATCTTTTCTTTCCCTTATTTTACTT-AAAATCAAAATTTGATCCTAA
520847 AAAAAAGACAAG
390 AAAAAAGACAAG
* * *
520859 CATTGATGCTTTGGGGTCGCAAGAGAAACTTTTCTTTCCACCGTTATTGATAAAATCAAAGTTTG
1 CATTGATGCTTTGGGCTCACAAGAGAAACTTTTCTTTCCACCGTTATTGATAAAATCAAAGTGTG
* * * * *
520924 TCTCTTAAATAAGACAAACATGAAAACTCATGCTAATCCCCATTCTTTTCAGGGTTAGGAT-CCA
66 ACTCTTAAATAAGACAAACATGAAAACACATACTAATCCCCAATCTTTTCAGGATTAGG-TGCCA
* * ** * * *
520988 TAAACATATTCTTCTCTTAAGGATGGACGATATTGATGCTTTGGTTTCACACGAAACGCTTTTTT
130 TAAACATACTCTTCTCATAAGGATACACGATATTGATGCTGTGGTTTCACAAGAAACGCTTTCTT
* * * * *
521053 CCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGATTCTAGCAATGA
195 CCCACCAATTTTTGAAAAGTATAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGCAAGGA
* * * *
521118 TCTTCATTCGTTTTGCGATTACTCATTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
260 TCTTCATTCATTTTGCGATTACGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGAT
* *
521183 GGTTTTCTTT-GGCATGAAAATCTTTTCTTTGCCTTATTTTACTTAAAATCAAAATTTG
325 GGTTTT-TTTCAGCATGAAAATCTTTTCTTTCCCTTATTTTACTTAAAATCAAAATTTG
521241 TCCCTTCAAT
Statistics
Matches: 332, Mismatches: 48, Indels: 5
0.86 0.12 0.01
Matches are distributed among these distances:
401 13 0.04
402 315 0.95
403 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (401 bp):
CATTGATGCTTTGGGCTCACAAGAGAAACTTTTCTTTCCACCGTTATTGATAAAATCAAAGTGTG
ACTCTTAAATAAGACAAACATGAAAACACATACTAATCCCCAATCTTTTCAGGATTAGGTGCCAT
AAACATACTCTTCTCATAAGGATACACGATATTGATGCTGTGGTTTCACAAGAAACGCTTTCTTC
CCACCAATTTTTGAAAAGTATAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGCAAGGAT
CTTCATTCATTTTGCGATTACGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATG
GTTTTTTTCAGCATGAAAATCTTTTCTTTCCCTTATTTTACTTAAAATCAAAATTTGATCCTAAA
AAAAAGACAAG
Found at i:521757 original size:476 final size:476
Alignment explanation
Indices: 520859--526039 Score: 6311
Period size: 476 Copynumber: 10.9 Consensus size: 476
520849 AAAAGACAAG
* * *
520859 CATTGATGCTTTGGGGTCGCAAGAGAAACTTTTCTTTCCACCGTTATTGATAAAATCAAAGTTTG
1 CATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTG
* * * *
520924 TCTCTTAAATAAGACAAACATGAAAACTCATGCTAATCCCCATTCTTTTCAGGGTTAGG-ATCCA
66 TCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCA-CCA
* * ** * *
520988 TAAACATATTCTTCTCTTAAGGATGGACGATATTGATGCTTTGGTTTCACACGAAACGCTTTT-T
130 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACG-TTTTCT
* * * * *
521052 TCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTGGATTCTAGCAATG
194 TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGG
* * ** *
521117 ATCTTCATTCGTTTTGCGATTACTCATTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
259 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * * *
521182 TGGTTTTCTTTGGCATGAAAATCTTTTCTTTGCCTTATTTTACTTAAAATCAAAATTTGTCCCTT
324 TGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCTT
* * * **
521247 CAATAACG-CAAGCATTGATTCTTGTAACAGTCTCCATTCCTTTCAAAATTAAGAACCAAAAACA
389 AAATAA-GACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAACCAAAAACA
* * *
521311 TATTTCCTTCATTGGGATACATGA
453 CATTCCCTTCATTAGGATACATGA
* * * *
521335 TATTAATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTTCACCATTATTGATAGAATCAAAGTTTG
1 CATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTG
** * *
521400 TCTCTAAAATTTGAGAAACCTGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
66 TCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
* * ** *
521465 CAACCTAGTCTTCTCATAAGGACGCATGATATTGATGCTTTGGTTTCGCAAGAAACGTTTTCTTC
131 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGTTTTCTTC
* ** *
521530 CCACCAATTTTTGTAAAGTATAAGTTCCTTCCTCAAATGAGACAAACATGGATTCTAGTAAGGAT
196 CCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGAT
* *
521595 CTTCATTCATTTTGTGATAAGGCACTATAAACACATTCTCCTCATTAGGATAAATCATATTGATG
261 CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* * * * * *
521660 ATTTTATTTTGCATGGAAATATTTTCTTTGCCCTAGTTTCCTTAAAATAAAAGTTTGACCCTAAA
326 GTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCTTAA
* * * *
521725 ATAAGACAAGCATTGATTCTCATAATAGTCTCCA-TCCTTTCCAAGATTGGGAACCAAGAACACC
391 ATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTT-CAAGATTGGGAACCAAAAACACA
* *
521789 TTCCCTTTATTAGGATACACGA
455 TTCCCTTCATTAGGATACATGA
* * * *
521811 CATTGATGCTTTGGTGTCGCAAGAGCAGCTCTTCTTTCCATCGTTATTGATAGAATCATAGTTTG
1 CATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTG
* * * *
521876 TCTCTAAAATATGAGAAACATGAATACTCATACTAATCCCTATTCTTTTCAAGATTAGGCACCAT
66 TCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
* * * * * * * *
521941 AAAAATATTCTTCTCAAAATGATACATGATATGGATGCTTTGGTTTCGAAAGAAACGCTTTCTTC
131 AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGTTTTCTTC
* * * * *
522006 CC-CCTAATTTTTGAAAAGTTTAAGTTTATGCCTCAAATGAGAGAAATATGGATTCTAGTAAGGA
196 CCACC-AATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
* * *
522070 TCTTCATTCATTTCGTGATTAGACA-TGATAAACACATTCTCCTCATTAGTATAAATGATATTGA
260 TCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * *
522134 TGGTTCTCTTTAGCA-GGAAAATCTTTTTTTTGCCCTATTTTACTTAAAATCAAAGTTTGTCCCT
324 TGGTTTTCTTTTGCATGG-AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCT
* * * *
522198 TAAATAAGCCAAGCATTGATTCTCGTAACAGTCTCCAATCTTTTCAAGATTGGGAACCAAAAAAT
388 TAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAACC-AAAAAC
* *
522263 ACATTCCTTTCATTAGGATACATCA
452 ACATTCCCTTCATTAGGATACATGA
* *
522288 CATTGATGCTTTGGTGTCGCGAA-AGAAGCTTCTTTTTTCCACCATTATTGATAGAATCAAAGTT
1 CATTGATGCTTTGGTGTCGC-AAGAGAAGCTT-TTCTTTCCACCGTTATTGATAGAATCAAAGTT
*
522352 TGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTATTTTCAGGATTAGGCACC
64 TGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* ** * * * * *
522417 ACAAACATAAACTTCTCATAAGAATACACGATATTGATGCTTCGTTTTTGCAAGAAATGTTTTCT
129 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGTTTTCT
* * * * * * * *
522482 TCGCACTAATTTTTGTAAAGTCTAAGTTCGGGCTTCAAATGAGACAAACAAGGATTCTAGCAATG
194 TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGG
* * * *
522547 ATATTCATTCGTTTTGTGATTAGTCACTATAAACACATTCTCCTCATTAGGATAAATGATAGTGA
259 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
** * * * *
522612 TCATTTTGTTTTGCATGGAAATATTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTTAACCCTT
324 TGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCTT
* * * *
522677 GAATGAGACAAGCATTGATTCTCATAACAGTCTCCA-TCCTTTCCAAGATTGGGAACCAAGAACA
389 AAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTT-CAAGATTGGGAACCAAAAACA
* * *
522741 CCTTCCCTTTATTAGGATAAATGA
453 CATTCCCTTCATTAGGATACATGA
* * * * *
522765 CATTGACGCTTTGGTGTCGCAAGA-ACGGCTTATCTTTCCACCGTTATTTATAGATTCAAAGTTT
1 CATTGATGCTTTGGTGTCGCAAGAGA-AGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTT
* * *
522829 GTCTCTAAAATAACAGAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCA
65 GTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * * * * * * *
522894 TAAACAAAGTCTTCTCATAATGATACACAATATTGTTGCCTTGGTTTTGAAAGAAACGCTTTCTT
130 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGTTTTCTT
* * *
522959 CCC-CCAATTTTT-TAAAAGTTTAAGTTTGTGCCTCAAATGAGACAAATATGGATTCTAGTAAGA
195 CCCACCAATTTTTGT-AAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGG
* ** * *
523022 ATCTTCAATCATTTCATGATTAGGCACTATAAACACTTTCTCCTCATTAGTATAAATGATATTGA
259 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * * * *
523087 TGGTTTTCTTTGGCACGAAAATCTTTTTTTTGCCCTATTTTACTTAAAATCAAAATTTGTCCCTT
324 TGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCTT
* * * * * * * *
523152 CAATAAGGCAAGCATTAATTCTTGTAACAGTCTCCATTCTTTTCAAAATTGAGAACCAAAAACAT
389 AAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAACCAAAAACAC
*
523217 ATTCCCTTCATTAAGATACATGA
454 ATTCCCTTCATTAGGATACATGA
* * * *
523240 CATTAATGCTTTGGTGTCGTAAGAGAAGTTTTTCTGTT-CACCGTGATTGATAGAATCAAAGTTT
1 CATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCT-TTCCACCGTTATTGATAGAATCAAAGTTT
* * * * *
523304 GTCTCTGAAATATGAGAAACCTGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCA
65 GTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * ** * * *
523369 TCAACCTAGTCTTCTCATAAGGACGCATGATATTGATGCTTTGGTTTCGCATGAAATGTTTTCTT
130 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGTTTTCTT
* * * *
523434 CCCACCAATTTTTGTAAAGTCTTAGTTTGTGCCTCAAATGAGACAAACAAGGATTCTAGCAATGA
195 CCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
** * * *
523499 TCTTCATTTGTTTTGTGATTAGGCACTATAAACACAATCTTCTCATTAGGATAAATAATATTGAT
260 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * * * *
523564 GATTATCTTTTG-ATGGAAATCATTTCTTTGCTCTATTTTCCTTAAAATCAAAGTCTGACCCTAA
325 GGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCT-T
* * * * * * *
523628 AAAAAAGATAAGCTTTGATTCTCATAACGGTCTCCATT-CTTTCCAAGATTAGG-AGCAAAAACA
389 AAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTT-CAAGATTGGGAACCAAAAACA
* *
523691 CATTCCCTTTATTAGGCTACATGA
453 CATTCCCTTCATTAGGATACATGA
* **
523715 CATTGATGCTTTGGTGTCGTAAGA-ACAGCTTTTCTTTCCATTGTTATTGATAGAATCAAAGTTT
1 CATTGATGCTTTGGTGTCGCAAGAGA-AGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTT
* * * * *
523779 GTCTCTTAAATAAGACAAATATTAATACTCATACTAATCCCCAATCTTTTCAGGATTAGACACCA
65 GTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * * * *
523844 TCAACCTAGTCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCACAAGAAACGTTTT-TT
130 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGTTTTCTT
* * * * * *
523908 CCCACTAATTTTTGAAAAATCTTAGTTTGTGCCTCAAACGAGACAAACATGAATTCTAGTAAGGA
195 CCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
* * * *
523973 TCTTCATTTATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGTTAAATGATATTGAC
260 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * * *
524038 GATTTTGTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCTAA
325 GGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCTTA
* * * * * *
524103 AATAAGACAAGCATTGATTCTCATAGCAGTCTCCATT-ATTTCCATGATTAGGAACCAAGAACAC
390 AATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTT-CAAGATTGGGAACCAAAAACAC
* *
524167 ATTCCCTTTATTAGGATACCTGA
454 ATTCCCTTCATTAGGATACATGA
* *
524190 CATTGATGCTTTGGTGTAGCAAGA-ACAACTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTT
1 CATTGATGCTTTGGTGTCGCAAGAGA-AGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTT
* * * *
524254 GTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCAATCTTTTCAGGATTAGGTACCA
65 GTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * * * *
524319 TAAACAT-GCTCTTGTCATGAGGATACACGATATTTATGCTTTGGTTTCGCAAGAAATGATTTCT
130 TAAACATAG-TCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGTTTTCT
* * *
524383 TCCCACCAATTTTTGTAAAGTATAAGTTTATTCCTCAAATGAGACAAACATGGATTCTAGTAAGG
194 TCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGG
*
524448 ATCTTCATTCATTTTGTGATTAGGCACTATAAACATATTCTCCTCATTAGGATAAATGATATTGA
259 ATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* * * * * * * *
524513 TGATTTTGTTTTGCATGGAAATATTTTCTTTCCCCTAGTTCCCATAAAATAAAAGTTTGA-CCTT
324 TGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCTT
* * * *
524577 AAAATAAGACAATCATTGATTCTCATAACAGTCTCCA-TCCTATCCAAGATTGGGAACCAAGAAC
389 -AAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCT-TTCAAGATTGGGAACCAAAAAC
* * *
524641 ACCTTCCCTTTATTAGGATACATAA
452 ACATTCCCTTCATTAGGATACATGA
* * *
524666 CATTGATGCTTTGGTGTCGTAAGA-ACAGCTCTTCTTTCCACCGTTACTGATAGAATCAAAGTTT
1 CATTGATGCTTTGGTGTCGCAAGAGA-AGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTT
* * * *
524730 GTCTCTGAAATATGAGAAACATGAATACTCATA-TAATCCCCATTCTTTTCAAGATTAGGCACCA
65 GTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * * * * * * * *
524794 TAAAAATAGTCTTCTCATAATGATACACGATATGGATCCCTTGGTTTCGAAAGCAATGCTTTCTT
130 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGTTTTCTT
* * * * * * *
524859 CCCCCCAATTTTTGAAAAGTTTAAGTTTATGCCTCAAATGAGACAAATATGGATTCTAGCAAGTA
195 CCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
* * * * *
524924 CCTTCTTTCATTTCGTGATTAGGCA-TGATAAACACATTCTCCTCATTAGTATAAATGTTATTGA
260 TCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTAGGATAAATGATATTGA
* *
524988 TGGTTTT-TTTTAGCA-GGAAATCTTTT-TTTGCCCTATTTTACTTAAAATCAAAG-TTCATCCC
324 TGGTTTTCTTTT-GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGA-CCC
* ** * * * * **
525049 TTCAATAAGGTAAGCATTGATTCTCGTAATAGTCTCCAATCTTTTCGAGATTGGGAATGAAAAAC
387 TTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAACCAAAAAC
* *
525114 ACATTCCTTTCATTAGGATACATCA
452 ACATTCCCTTCATTAGGATACATGA
* * *
525139 CATTGATGCTTTGGTGT--CAAGAAAAGCTTTTTTTTTCCACCATTATTGATAGAATCAAAGTTT
1 CATTGATGCTTTGGTGTCGCAAGAGAAGC-TTTTCTTTCCACCGTTATTGATAGAATCAAAGTTT
*
525202 GTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTATTTTCAGGATTAGGCACCA
65 GTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCA
* * * * *
525267 CAAACATAGACTTCTCATAAGAATACACGATATTGATGCTTTTGTTTCGCAAGAAACATTTTCTT
130 TAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGTTTTCTT
* * * * * * * * *
525332 GCCACCCATTTTTGTAAAGTATAAGTTCGTACCTCAAACGAGACAAACAAGGGTTCTGGTAAGGA
195 CCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
* * * * *
525397 TCTTCATTTATTTTGTGATAAGGCACTATAAATACATTCTCCTCCTTAGGATAATTGATATTGAT
260 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGAT
* * *
525462 GGTTTTCTTTGGCAT-GAAACTCTTTTCTGTGCCCTATTTTCCTTAAAATCAAAGTTTGACTCTT
325 GGTTTTCTTTTGCATGGAAA-TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCTT
* * * * *
525526 AAATAAGACAGGCATTGATTCCCGTAACAGTCTCCAATCTTTTCAAGATTGGGAACCAAATACAC
389 AAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAACCAAAAACAC
* * *
525591 CTTCCTTTCATTAGGATACATCA
454 ATTCCCTTCATTAGGATACATGA
* * * *
525614 CATTGATGCTTTGGTG-CTGCAAAAAAAGCTTCTTTTTTCCACCATTATTGATAGAATCAAAGTT
1 CATTGATGCTTTGGTGTC-GCAAGAGAAGCTT-TTCTTTCCACCGTTATTGATAGAATCAAAGTT
* * **
525678 TGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCGTTTCAAAATTAGGCACC
64 TGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
* ** * *
525743 GTAAACATAGTCTTCTGTTTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACGCTTTT-
129 ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACG-TTTTC
* * * **
525807 TTCCCA-CAAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAAAGACAAACATGGATTCTAGTAAG
193 TTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAG
* * *
525871 GATCTTTATT-TTTTTAGTGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATT
258 GATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATT
*
525935 GATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAAGT-AAAGTTTGTA-
322 GATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA-TCAAAGTTTG-AC
* * * *
525998 CTTTAAATTAGA-ATGCATTGATTCTCGTAAAAGTCTCCATTC
385 CCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTC
526040 TTCACTCATT
Statistics
Matches: 4042, Mismatches: 605, Indels: 117
0.85 0.13 0.02
Matches are distributed among these distances:
471 7 0.00
472 65 0.02
473 302 0.07
474 211 0.05
475 1248 0.31
476 1585 0.39
477 272 0.07
478 348 0.09
479 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
CATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTG
TCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCAT
AAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAACGTTTTCTTC
CCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGAT
CTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG
GTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTGACCCTTAA
ATAAGACAAGCATTGATTCTCGTAACAGTCTCCATTCCTTTCAAGATTGGGAACCAAAAACACAT
TCCCTTCATTAGGATACATGA
Found at i:525272 original size:158 final size:158
Alignment explanation
Indices: 521287--525808 Score: 458
Period size: 159 Copynumber: 28.5 Consensus size: 158
521277 TCTCCATTCC
* * * * * * * *
521287 TTTCAAAATTAAGAACCAAAAACATATTTCC-TTCATTGGGATACATGATATTAATGCTTTGGTG
1 TTTCAAGATTAGGCACC-AAAACACA-TTCCTTTCATTAGGATACATCACATTGATGCTTTGGTG
* **
521351 TCGCAAGAGAAGCTTTTCTTTT--CACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATTTGA
64 T-GCAAGAAAAGCTTTT-TTTTGCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGA
* * *
521414 GAAACCTGAATACTCATACTAATCCCCATTCT
127 CAAACATGAATACTCATACTAATCCCCATTAT
* * * * ** * *
521446 TTTCAGGATTAGGCACCATCAAC-CTAGT-CTTCTCATAAGGACGCATGATATTGATGCTTTGGT
1 TTTCAAGATTAGGCACCA-AAACAC-ATTCCTT-TCATTAGGATACATCACATTGATGCTTTGGT
* * * * * *
521509 TTCGCAAG-AAA-CGTTTTCTTCCCACCAATTTTTG-TA-AAGT-ATAAGTTCCT-TC-CTCAAA
63 GT-GCAAGAAAAGCTTTTTTTTGCCACC-ATTATTGATAGAA-TCA-AAGTT--TGTCTCTAAAA
* * * *** **
521567 TGAGACAAACATGGATTCT-AGTAAGGATCTTCATTCAT
122 TAAGACAAACATGAATACTCA-TACTAATCCCCATT-AT
** * * * * * * **
521605 TTT-GTGATAAGGCACTATAAACACATT-CTCCTCATTAGGATAAATCATATTGATGATTTTATT
1 TTTCAAGATTAGGCACCA-AAACACATTCCT-TTCATTAGGATACATCACATTGATG-CTTTGGT
* * * ** * * *** * * * *
521668 TTGCATGGAAATATTTTCTTTGCC-CTAGTT-TCCTTAAAATAAAAGTTTGACCCTAAAATAAGA
63 GTGCAAGAAAAGCTTTTTTTTGCCACCA-TTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGA
* * * * * **
521731 CAAGCATTG-ATTCTCATAATAGTCTCCATCCT
127 CAAACA-TGAATACTCATACTAATCCCCATTAT
* * * *
521763 TTCCAAGATTGGGAACCAAGAACACCTTCCCTTT-ATTAGGATACA-CGACATTGATGCTTTGGT
1 TTTCAAGATTAGGCACCAA-AACACATT-CCTTTCATTAGGATACATC-ACATTGATGCTTTGGT
** * * * * * *
521826 GTCGCAAGAGCAGCTCTTCTTT-CCATCGTTATTGATAGAATCATAGTTTGTCTCTAAAATATGA
63 GT-GCAAGAAAAGCTTTTTTTTGCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGA
* * *
521890 GAAACATGAATACTCATACTAATCCCTATTCT
127 CAAACATGAATACTCATACTAATCCCCATTAT
* * ** * * * * *
521922 TTTCAAGATTAGGCACCATAAAAATATT-CTTCTCAAAATGATACATGATATGGATGCTTTGGTT
1 TTTCAAGATTAGGCACCA-AAACACATTCCTT-TCATTAGGATACATCACATTGATGCTTTGGTG
* * * * * ** * * *
521986 TCGAAAGAAACGC--TTTCTT-CCCCCTAATTTTTGA-A-AAGTTTAAGTTTATGC-CTCAAATG
64 T-GCAAGAAAAGCTTTTTTTTGCCACC--ATTATTGATAGAA-TCAAAGTTTGT-CTCTAAAATA
* * * * *** **
522045 AGAGAAATATGGATTCT-AGTAAGGATCTTCATTCA-
124 AGACAAACATGAATACTCA-TACTAATCCCCATT-AT
** * ** * * * * * * *
522080 TTTCGTGATTAGACATGATAAACACATT-CTCCTCATTAGTATAAATGATATTGATGGTTCT-CT
1 TTTCAAGATTAGGCACCA-AAACACATTCCT-TTCATTAGGATACATCACATTGATGCTT-TGGT
* * * * * * *
522143 TTAGCAGGAAAATCTTTTTTTTGCC-CTATT-TT-ACTTAAAATCAAAGTTTGTCCCTTAAATAA
63 GT-GCAAGAAAAGCTTTTTTTTGCCACCATTATTGA--TAGAATCAAAGTTTGTCTCTAAAATAA
* * * * * * * *
522205 GCCAAGCATTG-ATTCTCGTAAC-AGTCTCCAATCT
125 GACAAACA-TGAATACTCAT-ACTAATCCCCATTAT
* * *
522239 TTTCAAGATTGGGAACCAAAAAATACATTCCTTTCATTAGGATACATCACATTGATGCTTTGGTG
1 TTTCAAGATTAGGCACC--AAAACACATTCCTTTCATTAGGATACATCACATTGATGCTTTGGTG
*
522304 TCGCGAA-AGAAGCTTCTTTTTT-CCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAG
64 T-GC-AAGAAAAGCTT-TTTTTTGCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAG
522367 ACAAACATGAATACTCATACTAATCCCCATTAT
126 ACAAACATGAATACTCATACTAATCCCCATTAT
* * ** * * * * *
522400 TTTCAGGATTAGGCACCACAA-ACATAAACTTCTCATAAGAATACA-CGATATTGATGCTTCGTT
1 TTTCAAGATTAGGCACCAAAACACAT-TCCTT-TCATTAGGATACATC-ACATTGATGCTTTG-G
* * * * * * * * * * *
522463 TTTGCAAGAAATG-TTTTCTTCG-CACTAATTTTTG-TA-AAGTCTAAGTTCGGGCT-TCAAATG
62 TGTGCAAGAAAAGCTTTTTTTTGCCAC-CATTATTGATAGAA-TCAAAGTT-TGTCTCTAAAATA
* * * * *** *
522523 AGACAAACAAGGATTCTAGCA-A-TGATATTCATTCGT
124 AGACAAACATGAATACT--CATACTAATCCCCATT-AT
** * * * * * * * *
522559 TTT-GTGATTAGTCACTATAAACACATT-CTCCTCATTAGGATAAATGATAGTGAT-CATTTTGT
1 TTTCAAGATTAGGCACCA-AAACACATTCCT-TTCATTAGGATACATCACATTGATGC--TTTGG
* * * ** * * * ** * ** * ** *
522621 TTTGCATGGAAATATTTTCTTTACC-CTATT-TTCCTTAAAATCAAAGTTTAACCCTTGAATGAG
62 TGTGCAAGAAAAGCTTTTTTTTGCCACCATTATT-GATAGAATCAAAGTTTGTCTCTAAAATAAG
* * * * **
522684 ACAAGCATTG-ATTCTCATAAC-AGTCTCCATCCT
126 ACAAACA-TGAATACTCAT-ACTAATCCCCATTAT
* * * * * * *
522717 TTCCAAGATTGGGAACCAAGAACACCTTCCCTTT-ATTAGGATAAATGACATTGACGCTTTGGTG
1 TTTCAAGATTAGGCACCAA-AACACATT-CCTTTCATTAGGATACATCACATTGATGCTTTGGTG
** * * * * * * *
522781 TCGCAAGAACGGCTTATCTTT-CCACCGTTATTTATAGATTCAAAGTTTGTCTCTAAAATAACAG
64 T-GCAAGAAAAGCTTTTTTTTGCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGAC
*
522845 AAACATGAATACTCATACTAATCCCCATTCT
128 AAACATGAATACTCATACTAATCCCCATTAT
* * * * * * *
522876 TTTCAAGATTAGGCACCATAAACAAAGT-CTTCTCATAATGATACA-CAATATTGTTGCCTTGGT
1 TTTCAAGATTAGGCACCA-AAACACATTCCTT-TCATTAGGATACATC-ACATTGATGCTTTGG-
* * * * * * * ** * *
522939 TTTGAAAGAAACGC--TTTCTT-CCCCCAATT-TT-TTAAAAGTTTAAGTTTGTGC-CTCAAATG
62 TGTGCAAGAAAAGCTTTTTTTTGCCACC-ATTATTGATAGAA-TCAAAGTTTGT-CTCTAAAATA
* * * ** * * *
522998 AGACAAATATGGATTCT-AGTAAGAATCTTCAATCA-
124 AGACAAACATGAATACTCA-TACTAATC-CCCATTAT
* * * * * * * * * ** *
523033 TTTCATGATTAGGCACTATAAACAC-TTTCTCCTCATTAGTATAAATGATATTGATGGTTTTCTT
1 TTTCAAGATTAGGCACCA-AAACACATTCCT-TTCATTAGGATACATCACATTGATGCTTTGGTG
* * * * * * **
523097 TGGCACGAAAATCTTTTTTTTGCC-CTATT-TT-ACTTAAAATCAAAATTTGTCCCTTCAATAAG
64 T-GCAAGAAAAGCTTTTTTTTGCCACCATTATTGA--TAGAATCAAAGTTTGTCTCTAAAATAAG
* * * * ** * * *
523159 GCAAGCATTAATTCTTGTAAC-AGTCTCCATTCT
126 ACAAACATGAATACTCAT-ACTAATCCCCATTAT
* * * * * * *
523192 TTTCAAAATT-GAGAACCAAAAACATATTCCCTTCATTAAGATACATGACATTAATGCTTTGGTG
1 TTTCAAGATTAG-GCACC-AAAACACATTCCTTTCATTAGGATACATCACATTGATGCTTTGGTG
* * * * * *
523256 TCGTAAGAGAAG-TTTTTCTGTT--CACCGTGATTGATAGAATCAAAGTTTGTCTCTGAAATATG
64 T-GCAAGAAAAGCTTTTT-T-TTGCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAG
* * *
523318 AGAAACCTGAATACTCATACTAATCCCCATTCT
126 ACAAACATGAATACTCATACTAATCCCCATTAT
* * * ** * *
523351 TTTCAAGATTAGGCACCATCAAC-CTAGT-CTTCTCATAAGGACGCATGATATTGATGCTTTGGT
1 TTTCAAGATTAGGCACCA-AAACAC-ATTCCTT-TCATTAGGATACATCACATTGATGCTTTGGT
* * * * * * ** * *
523414 TTCGCATGAAATG--TTTTCTTCCCACCAATTTTTG-TA-AAGTCTTAGTTTGTGC-CTCAAATG
63 GT-GCAAGAAAAGCTTTTTTTTGCCACC-ATTATTGATAGAA-TCAAAGTTTGT-CTCTAAAATA
* * * * **
523474 AGACAAACAAGGATTCTAGCA-A-TGATCTTCATT-T
124 AGACAAACATGAATACT--CATACTAATCCCCATTAT
*** * * * * * * **
523508 GTTTTGTGATTAGGCACTATAAACACAAT-CTTCTCATTAGGATAAATAATATTGATGATTATCT
1 -TTTCAAGATTAGGCACCA-AAACACATTCCTT-TCATTAGGATACATCACATTGATGCTT-TGG
* * * * * * * * ** * * * * *
523572 TTTG-ATGGAAATCATTTCTTTG-CTCTATT-TTCCTTAAAATCAAAGTCTGACCCTAAAAAAAA
62 TGTGCAAGAAAAGCTTTTTTTTGCCACCATTATT-GATAGAATCAAAGTTTGTCTCT-AAAATAA
* * * * ** * *
523634 GATAAGCTTTG-ATTCTCATAAC-GGTCTCCATTCT
125 GACAAAC-ATGAATACTCAT-ACTAATCCCCATTAT
* * * *
523668 TTCCAAGATTAGG-AGCAAAAACACATTCCCTTT-ATTAGGCTACATGACATTGATGCTTTGGTG
1 TTTCAAGATTAGGCA-CCAAAACACATT-CCTTTCATTAGGATACATCACATTGATGCTTTGGTG
* * * *** *
523731 TCGTAAGAACAGCTTTTCTTT-CCATTGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
64 T-GCAAGAAAAGCTTTTTTTTGCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGAC
* * * *
523795 AAATATTAATACTCATACTAATCCCCAATCT
128 AAACATGAATACTCATACTAATCCCCATTAT
* * * * * * * *
523826 TTTCAGGATTAGACACCATCAAC-CTAGT-CTTCTCATAAGGATGCATGATATTGATGCTTTGGT
1 TTTCAAGATTAGGCACCA-AAACAC-ATTCCTT-TCATTAGGATACATCACATTGATGCTTTGGT
* * * * * * * ** * **
523889 TTCACAAG-AAA-C-GTTTTTTCCCACTAATTTTTGA-AAAATCTTAGTTTGTGC-CTCAAACGA
63 GT-GCAAGAAAAGCTTTTTTTTGCCAC-CATTATTGATAGAATCAAAGTTTGT-CTCTAAAATAA
* *** **
523949 GACAAACATGAATTCT-AGTAAGGATCTTCATT-T
125 GACAAACATGAATACTCA-TACTAATCCCCATTAT
** * * * * * * * * *
523982 ATTTCGTGATTAGGCACTATAAACACATT-CTCCTCATTAGGTTAAATGATATTGACGATTTTGT
1 -TTTCAAGATTAGGCACCA-AAACACATTCCT-TTCATTAGGATACATCACATTGATG-CTTTGG
* * * ** * * ** * * *
524046 TTTGCATGGAAATATTTTCTTTGCC-CTATT-TTCCTTAAAATCAAAGTTTGACCCTAAAATAAG
62 TGTGCAAGAAAAGCTTTTTTTTGCCACCATTATT-GATAGAATCAAAGTTTGTCTCTAAAATAAG
* * * *
524109 ACAAGCATTG-ATTCTCATAGC-AGTCTCCATTAT
126 ACAAACA-TGAATACTCATA-CTAATCCCCATTAT
* * * * *
524142 TTCCATGATTAGGAACCAAGAACACATTCCCTTT-ATTAGGATACCTGACATTGATGCTTTGGTG
1 TTTCAAGATTAGGCACCAA-AACACATT-CCTTTCATTAGGATACATCACATTGATGCTTTGGTG
* * * *
524206 TAGCAAGAACAA-CTTTTCTTT-CCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATATGA
64 T-GCAAGAA-AAGCTTTTTTTTGCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGA
* *
524269 CAAACATGAATACTCATACTAATCCCCAATCT
127 CAAACATGAATACTCATACTAATCCCCATTAT
* * * * * * *
524301 TTTCAGGATTAGGTACCATAA-ACATGCTCTTGTCATGAGGATACA-CGATATTTATGCTTTGGT
1 TTTCAAGATTAGGCACCAAAACACATTC-CTT-TCATTAGGATACATC-ACATTGATGCTTTGGT
* * * * * * * *
524364 TTCGCAAGAAATG--ATTTCTTCCCACCAATTTTTG-TA-AAGT-ATAAGTTTAT-TCCTCAAAT
63 GT-GCAAGAAAAGCTTTTTTTTGCCACC-ATTATTGATAGAA-TCA-AAGTTTGTCT-CTAAAAT
* * * *** **
524423 GAGACAAACATGGATTCT-AGTAAGGATCTTCATTCAT
123 AAGACAAACATGAATACTCA-TACTAATCCCCATT-AT
** * * * * * * * *
524460 TTT-GTGATTAGGCACTATAAACATATT-CTCCTCATTAGGATAAATGATATTGATGATTTTGTT
1 TTTCAAGATTAGGCACCA-AAACACATTCCT-TTCATTAGGATACATCACATTGATG-CTTTGGT
* * * ** * * * * *
524523 TTGCATGGAAATATTTTCTTT-CC-CC--TAGTTCCCATAAAATAAAAGTTTGAC-CTTAAAATA
63 GTGCAAGAAAAGCTTTTTTTTGCCACCATTA-TT--GATAGAATCAAAGTTTGTCTC-TAAAATA
* * * * **
524583 AGACAATCATTG-ATTCTCATAAC-AGTCTCCATCCT
124 AGACAAACA-TGAATACTCAT-ACTAATCCCCATTAT
* * * * * *
524618 ATCCAAGATTGGGAACCAAGAACACCTTCCCTTT-ATTAGGATACATAACATTGATGCTTTGGTG
1 TTTCAAGATTAGGCACCAA-AACACATT-CCTTTCATTAGGATACATCACATTGATGCTTTGGTG
* * * * * * * * *
524682 TCGTAAGAACAGCTCTTCTTT-CCACCGTTACTGATAGAATCAAAGTTTGTCTCTGAAATATGAG
64 T-GCAAGAAAAGCTTTTTTTTGCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGAC
*
524746 AAACATGAATACTCATA-TAATCCCCATTCT
128 AAACATGAATACTCATACTAATCCCCATTAT
* * * * * * * * *
524776 TTTCAAGATTAGGCACCATAAAAATAGT-CTTCTCATAATGATACA-CGATATGGATCCCTTGGT
1 TTTCAAGATTAGGCACCA-AAACACATTCCTT-TCATTAGGATACATC-ACATTGATGCTTTGGT
* * * * * * * * ** * * *
524839 TTCGAAAGCAATGC--TTTCTTCCCCCCAATTTTTGA-A-AAGTTTAAGTTTATGC-CTCAAATG
63 GT-GCAAGAAAAGCTTTTTTTTGCCACC-ATTATTGATAGAA-TCAAAGTTTGT-CTCTAAAATA
* * * *
524899 AGACAAATATGGAT--TC-TAGC-AAGTACCTTCTTTCA-
124 AGACAAACATGAATACTCATA-CTAA-T-CC-CCATT-AT
** ** * * * *** * ** *
524934 TTTCGTGATTAGGCATGATAAACACATT-CTCCTCATTAGTATAAATGTTATTGATGGTTTTTTT
1 TTTCAAGATTAGGCACCA-AAACACATTCCT-TTCATTAGGATACATCACATTGATGCTTTGGTG
* * * * ** * **
524998 TAGC-AGGAAATC-TTTTTTTGCC-CTATT-TT-ACTTAAAATCAAAGTTCATCCCTTCAATAAG
64 T-GCAAGAAAAGCTTTTTTTTGCCACCATTATTGA--TAGAATCAAAGTTTGTCTCTAAAATAAG
** * * * * * * * *
525058 GTAAGCATTG-ATTCTCGTAATAGTCTCCAATCT
126 ACAAACA-TGAATACTCATACTAATCCCCATTAT
* * * **
525091 TTTCGAGATTGGGAATGAAAAACACATTCCTTTCATTAGGATACATCACATTGATGCTTTGGTGT
1 TTTCAAGATTAGGCA-CCAAAACACATTCCTTTCATTAGGATACATCACATTGATGCTTTGGTGT
*
525156 -CAAGAAAAGCTTTTTTTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAA
65 GCAAGAAAAGCTTTTTTTTGCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAA
525220 ACATGAATACTCATACTAATCCCCATTAT
130 ACATGAATACTCATACTAATCCCCATTAT
* * ** * * * *
525249 TTTCAGGATTAGGCACCACAA-ACATAGACTTCTCATAAGAATACA-CGATATTGATGCTTTTGT
1 TTTCAAGATTAGGCACCAAAACACAT-TCCTT-TCATTAGGATACATC-ACATTGATGCTTTGGT
* * * * * * *
525312 TTCGCAAG-AAA-CATTTTCTTGCCACCCATTTTTG-TA-AAGT-ATAAGTTCGTAC-CTCAAAC
63 GT-GCAAGAAAAGCTTTTTTTTGCCA-CCATTATTGATAGAA-TCA-AAGTTTGT-CTCTAAAAT
* * ** * ** *** **
525371 GAGACAAACAAGGGTTCTGGTAAGGATCTTCATTTAT
123 AAGACAAACATGAATACTCATACTAATCCCCA-TTAT
** * * * * * * * * **
525408 TTT-GTGATAAGGCACTATAAATACATT-CTCCTCCTTAGGATA-ATTGATATTGATGGTTTTCT
1 TTTCAAGATTAGGCACCA-AAACACATTCCT-TTCATTAGGATACA-TCACATTGATGCTTTGGT
* * ** * * * ** * * *
525470 TTGGCATGAAACTCTTTTCTGTGCC-CTATT-TTCCTTAAAATCAAAGTTTGACTCTTAAATAAG
63 GT-GCAAGAAAAGCTTTTTTTTGCCACCATTATT-GATAGAATCAAAGTTTGTCTCTAAAATAAG
** * * * * * * *
525533 ACAGGCATTG-ATTCCCGTAAC-AGTCTCCAATCT
126 ACAAACA-TGAATACTCAT-ACTAATCCCCATTAT
* * *
525566 TTTCAAGATTGGGAACCAAATACACCTTCCTTTCATTAGGATACATCACATTGATGCTTTGGTGC
1 TTTCAAGATTAGGCACCAAA-ACACATTCCTTTCATTAGGATACATCACATTGATGCTTTGGTG-
*
525631 TGCAAAAAAAGCTTCTTTTTT-CCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGAC
64 TGCAAGAAAAGCTT-TTTTTTGCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGAC
* **
525695 AAACATGAATACTCATACTAATCCCTATTCG
128 AAACATGAATACTCATACTAATCCCCATTAT
* * * * ** * *
525726 TTTCAAAATTAGGCACCGTAAACATAGT-CTTCTGTTTAGGATACA-CGATATTGATGATTTGGT
1 TTTCAAGATTAGGCACC-AAAACACATTCCTT-TCATTAGGATACATC-ACATTGATGCTTTGGT
* *
525789 TTCGCAAGAAACGCTTTTTT
63 GT-GCAAGAAAAGCTTTTTT
525809 CCCACAAATT
Statistics
Matches: 3043, Mismatches: 998, Indels: 644
0.65 0.21 0.14
Matches are distributed among these distances:
154 3 0.00
155 8 0.00
156 50 0.02
157 385 0.13
158 942 0.31
159 1249 0.41
160 311 0.10
161 90 0.03
162 4 0.00
163 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (158 bp):
TTTCAAGATTAGGCACCAAAACACATTCCTTTCATTAGGATACATCACATTGATGCTTTGGTGTG
CAAGAAAAGCTTTTTTTTGCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAA
CATGAATACTCATACTAATCCCCATTAT
Found at i:526331 original size:13 final size:13
Alignment explanation
Indices: 526313--526369 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
526303 CATAAAGTGT
526313 TGTATCGATACAA
1 TGTATCGATACAA
526326 TGTATCGATACATAA
1 TGTATCGATAC--AA
526341 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
526358 TGTATCGATACA
1 TGTATCGATACA
526370 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:526348 original size:32 final size:32
Alignment explanation
Indices: 526293--526390 Score: 151
Period size: 32 Copynumber: 3.0 Consensus size: 32
526283 TTCAACGATT
* *
526293 TGTATCAATGCATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
526326 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* *
526358 TGTATCGATACATAAGTTTTGTATCAATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
526390 T
1 T
526391 TTAAGCTACT
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 50 0.82
33 11 0.18
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:526350 original size:19 final size:18
Alignment explanation
Indices: 526326--526388 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
526316 ATCGATACAA
526326 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGT-T
526345 TGTATCGATAC--AA---
1 TGTATCGATACATAAGTT
526358 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAG-TT
*
526377 TGTATCAATACA
1 TGTATCGATACA
526389 ATTTAAGCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
15 2 0.05
17 2 0.05
19 22 0.59
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (18 bp):
TGTATCGATACATAAGTT
Found at i:526449 original size:13 final size:13
Alignment explanation
Indices: 526431--526455 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
526421 ATTACTCAAA
526431 TGTATCGATACAT
1 TGTATCGATACAT
526444 TGTATCGATACA
1 TGTATCGATACA
526456 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:526508 original size:52 final size:50
Alignment explanation
Indices: 526444--526592 Score: 199
Period size: 52 Copynumber: 2.9 Consensus size: 50
526434 ATCGATACAT
*
526444 TGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAAA
1 TGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAAA
* * *
526496 TGTATCGATACACTATAAAATGTATCAATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAAA
*
526548 TGTATCGATACACTATTAAATGTATCGAGACATGCAGGCAAATTT
1 TGTATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
526593 TCATATTTCG
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
51 2 0.02
52 84 0.98
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.30
Consensus pattern (50 bp):
TGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAAA
Found at i:531492 original size:951 final size:945
Alignment explanation
Indices: 529647--532605 Score: 3924
Period size: 951 Copynumber: 3.1 Consensus size: 945
529637 CGTTACGACA
* * * * *
529647 ATTAGGCACTATAAACACATTCTCCTCATCAGCAGACATGATATTGATGGTTTTCTTTTGCATGG
1 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGG
* *
529712 AAATCTTTTATTTGCCTTTTTTTCCTTAAAATCAAAGTTTATACTTTAAATGAGACAAGCATTGA
66 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
*
529777 TTCTTGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
131 TTCTTGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * *
529842 CATCACATTGATGCTTTGGTGTCACAAGAGAAGCTTCTTTTTTCCCCCATTATTGATAGAATCAA
196 CATGACATTGATGCTTTGGTGTC-CAAGAAAAGCTT-TTTTTTCCACCATTATTGATAGAATCAA
* * *
529907 AGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCGTTTCAGAATTAGG
259 AGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGG
** * * * * *
529972 CACCATAAACATAGTCTTCTGTTTAGCATACATGATATTGATGATTTGGTTTCGCAAGAAATG-T
324 CACCATAAACATAGTCTTCTCATAAGAATACACGATATTGATGCTTTGGTTTCGCAAGAAACGAT
* * * * *
530036 TTTTCTCCCACCAA-TTTTGTAAATTCTAAGTTCGTGCCTCAAAAAAGACAAACTTGGATTCTAG
389 TTTT-TCCCACCAATTTTTGTAAAGTATAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAG
* * * * *
530100 TAAAGATCTTTATTC-TTTTAGTGATTAGGCACTGTAAACACATTCTACTTATTAGGATAATTGA
453 TAAGGATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAATTGA
* * *
530164 TATTGATGGTTTTTTCTTGCATGAAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTT
517 TATTGATGGTTTTTT-TTGCATGGAAATCTTTTCTTT-CCCTATTTTCCTTAAAATCAAAG-TTT
* * * * * * * * * * *
530229 TA-CTTTAAATGAGACAAGCATTGATTGTTGTAATAGCCTCCATTATTTTTAAAATTGAGAACCA
579 GACCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCA-TCTTTTCAAGATTGGGAACC-
* * * *
530293 AAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCT
642 AAAACACCTTCCCTTTATTAGGATACATAACATTGATGCTTTGGTGTCACAAGAGAAGCTCTTCT
** * * * *
530358 TTCTGCCATTATTGATAGAATCAAAGTTTGTCTCTGAAATAAAAGAAACTTGAATACTCAAACAA
707 TTCCACCATTATTGATAGAATCAAAGTTTGTCTCTGAAATAAGAGAAACATGAATACTCATACTA
* * *
530423 ATCCCCATTCTTTTCAAGATTAGGTACCATAAACATAGTCTTCTGTTTAGGGTACATGATATTGA
772 ATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTGTTTAGGATACACGATATTGA
* *
530488 TGATTTGGTTTCGCAAGAAATGTTTTTTTCCCACCAAATTTGTAAATTTTAAGTTCGTGCCTCAA
837 TGATTTGGTTTCGCAAGAAATGCTTTTTTCCCACCAATTTTGTAAA-TTTAAGTTCGTGCCTCAA
*
530553 AAGAGACAAACTTGGATCCTAGTAAAGATCTTTATTCTTTTAGTG
901 AAGAGACAAACTTGGATTCTAGTAAAGATCTTTATTCTTTTAGTG
530598 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTT-TTCTTGCATG
1 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTT-TTGCATG
530662 GAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTG
65 GAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTG
* * * * * *
530727 ATTGTTGTAATAGCCTCCATTATTTTTAAAATTGAGAACCAAAAACACATTCCCTTCATTAGGAT
130 ATTCTTGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGAT
* * *
530792 ACATGACATTGATGCTTTGGTGTCGCAAGATCAA-CTTTTCTTTCCACCGTTATTGATAGAATCA
195 ACATGACATTGATGCTTTGGTGTC-CAAGA-AAAGCTTTTTTTTCCACCATTATTGATAGAATCA
* * *
530856 AAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCAATCTTTTCAGGATTAG
258 AAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAG
* * * * * *
530921 GTACCATAAACATACTCTTCTCATGAGGATACACGATATTTATGCTTTGGTTTCACAAGAAACGA
323 GCACCATAAACATAGTCTTCTCATAAGAATACACGATATTGATGCTTTGGTTTCGCAAGAAACGA
* ** * *
530986 TTTTTTTCCACCAATTTTTGTAAAGTATAAGTTTATTCCTCAAATGAGACAAACATGGATTCTAG
388 TTTTTTCCCACCAATTTTTGTAAAGTATAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAG
*
531051 TAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAT
453 TAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAATTGAT
* * * * *
531116 ATTGATGATTTTGTTTTGCATGGAAATATTTTCTTTCCCATAGTTTCCATAAAATAAAAGTTTGA
518 ATTGATGGTTTT-TTTTGCATGGAAATCTTTTCTTTCCC-TATTTTCCTTAAAATCAAAGTTTGA
* * * *
531181 CCCTAAAATAAGACAAGCATTGATTCTCATAACAGTCTCCATCCTATCCAAGATTGGGAACCAAG
581 CCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCCAT-CTTTTCAAGATTGGGAACCAA-
*
531246 AACACCTTCCCTTTATTAGGATACATAACATTGATGCTTTGGTGTCATAAGA-ACAGCTCTTCTT
644 AACACCTTCCCTTTATTAGGATACATAACATTGATGCTTTGGTGTCACAAGAGA-AGCTCTTCTT
* * *
531310 TCCACCGTTACTGATAGAATCAAAGTTTGTCTCTGAAATATGAGAAACATGAATACTCATA-TAA
708 TCCACCATTATTGATAGAATCAAAGTTTGTCTCTGAAATAAGAGAAACATGAATACTCATACTAA
* *** * * *
531374 TCCCCATTCTTTTCAAGATTAGGCACCATAAAAATAGTCTTCACATAATGATACACGATATGGAT
773 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTGTTTAGGATACACGATATTGAT
** * * * * * **
531439 GCCTTGGTTTCGAAAGCAATGCTTTCTTCCCCCCAATTTTTGAAAAGTTTAAGTTTATGCCTCAA
838 GATTTGGTTTCGCAAGAAATGCTTTTTTCCCACCAA-TTTTGTAAA-TTTAAGTTCGTGCCTCAA
* * *
531504 ATGAGACAAA-TATGGATTCTAGT-AAGTATCTTCT-TTCATTTCGTG
901 AAGAGACAAACT-TGGATTCTAGTAAAG-ATCTT-TATTCTTTTAGTG
* * *
531549 ATTAGGCA-TGATAAACACATTCTCCTCATTAGTATAAATGATATTGATGGTTTT-TTTAGCA-G
1 ATTAGGCACT-ATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATG
* * * * * * * *
531611 GAAAATCATTTT-TTTGCCCTATTTTACTTAAAATCAAAGTTCGTCCATTCAATAAGGCAAGCAT
65 G-AAATC-TTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCAT
* * * * * * *
531675 TGATTCTCGTAATAGTCTGCAATCTTTTCAAGAGTGGGAACGAAAAACATATTCCTTTCATTAGG
128 TGATTCTTGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGG
531740 ATACATGACATTGATGCTTTGGTGT-CAAGAAAAGCTTTTTTTTTCCACCATTATTGATAGAATC
193 ATACATGACATTGATGCTTTGGTGTCCAAGAAAAGC-TTTTTTTTCCACCATTATTGATAGAATC
*
531804 AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTATTTTCAGGATTA
257 AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
* * * *
531869 GGCACCACAAGCATAGACTTCTCATAAGAATACACGATATTGATGCTTTTGTTTCGCAAGAAAC-
322 GGCACCATAAACATAGTCTTCTCATAAGAATACACGATATTGATGCTTTGGTTTCGCAAGAAACG
* * * * *
531933 ATTTTCTTCCCACCCATTTTTGTAAAGTATAAGTCCGTACCTCAAAGGAGACAAACAAGGGTTCT
387 ATTTT-TTCCCACCAATTTTTGTAAAGTATAAGTTCGTACCTCAAAAGAGACAAACATGGATTCT
* * * *
531998 GGTAAGGATCTTCATTTATTTTGTGATTAGGCACTATAAACACATTCACCTCCTTAGGATAATTG
451 AGTAAGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAATTG
* *
532063 ATATTGATGGTTTTCTTTGGCAT-GAAACTCTTTTCTGTGCCCTATTTTCCTTAAAATCAAAGTT
516 ATATTGATGGTTTT-TTTTGCATGGAAA-TCTTTTCT-TTCCCTATTTTCCTTAAAATCAAAGTT
* *
532127 TGACTCTTAAATAAGAC-AGCATTGATTCCCGTAACAGTCTCCAATCTTTTCAAGATTGGGAACC
578 TGACCCTTAAATAAGACAAGCATTGATTCTCGTAACAGTCTCC-ATCTTTTCAAGATTGGGAACC
* * *
532191 AAATACACCTT-CCTTTCATTAGGATACATCACATTGATGCTTTGGTGCCGCAAGAGAAGCTTCT
642 AAA-ACACCTTCCCTTT-ATTAGGATACATAACATTGATGCTTTGGTGTCACAAGAGAAGC-TCT
* * *
532255 TTTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATA
704 TCTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTGAAATAAGAGAAACATGAATACTCATA
* * * *
532320 CTAATCCCTATTCATTTCAAAATTAGGCACCATAAACATAGTCTTTTGTTTAGGATACACGATAT
769 CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTGTTTAGGATACACGATAT
*
532385 TGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCT
834 TGATGATTTGGTTTCGCAAGAAATGCTTTTTTCCCACCAATTTTGTAAATT-TAAGTTCGTGCCT
* * *
532450 CAAAAGGGACAAACATGGATTCTAGTAAGGATCTTTATTCTTTTAGTG
898 CAAAAGAGACAAACTTGGATTCTAGTAAAGATCTTTATTCTTTTAGTG
*
532498 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTAATGGTTTTCTTTTGCATGG
1 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGG
* *
532563 AAATCTTTTCTTTGCCTTATTTTCCTTAAAAGCAAAGTTTGTA
66 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTA
532606 GTAAAAGTCT
Statistics
Matches: 1741, Mismatches: 230, Indels: 75
0.85 0.11 0.04
Matches are distributed among these distances:
947 8 0.00
948 104 0.06
949 487 0.28
950 509 0.29
951 624 0.36
952 9 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (945 bp):
ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGG
AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
TTCTTGTAATAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
CATGACATTGATGCTTTGGTGTCCAAGAAAAGCTTTTTTTTCCACCATTATTGATAGAATCAAAG
TTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
CCATAAACATAGTCTTCTCATAAGAATACACGATATTGATGCTTTGGTTTCGCAAGAAACGATTT
TTTCCCACCAATTTTTGTAAAGTATAAGTTCGTACCTCAAAAGAGACAAACATGGATTCTAGTAA
GGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAATTGATATT
GATGGTTTTTTTTGCATGGAAATCTTTTCTTTCCCTATTTTCCTTAAAATCAAAGTTTGACCCTT
AAATAAGACAAGCATTGATTCTCGTAACAGTCTCCATCTTTTCAAGATTGGGAACCAAAACACCT
TCCCTTTATTAGGATACATAACATTGATGCTTTGGTGTCACAAGAGAAGCTCTTCTTTCCACCAT
TATTGATAGAATCAAAGTTTGTCTCTGAAATAAGAGAAACATGAATACTCATACTAATCCCCATT
CTTTTCAAGATTAGGCACCATAAACATAGTCTTCTGTTTAGGATACACGATATTGATGATTTGGT
TTCGCAAGAAATGCTTTTTTCCCACCAATTTTGTAAATTTAAGTTCGTGCCTCAAAAGAGACAAA
CTTGGATTCTAGTAAAGATCTTTATTCTTTTAGTG
Found at i:532603 original size:475 final size:474
Alignment explanation
Indices: 529647--532603 Score: 3692
Period size: 475 Copynumber: 6.2 Consensus size: 474
529637 CGTTACGACA
* * * * *
529647 ATTAGGCACTATAAACACATTCTCCTCATCAGCAGACATGATATTGATGGTTTTCTTTTGCATGG
1 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTT-TTTTGCATGG
* * *
529712 AAATCTTTTATTTGCCTTTTTTTCCTTAAAATCAAAGTTTATACTTTAAATGAGACAAGCATTGA
65 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTT-GACTTTAAATAAGACAAGCATTGA
* *
529777 TTCTTGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
129 TTCTCGTAACAGTCTCCAATATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * *
529842 CATCACATTGATGCTTTGGTGTCACAAGAGAAGCTTCTTTTTTCCCCCATTATTGATAGAATCAA
194 CATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTCTTCTTTCCACCATTATTGATAGAATCAA
* *
529907 AGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCGTTTC-AGAATTAG
259 AGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAG-ATTAG
** * * *
529971 GCACCATAAACATAGTCTTCTGTTTAGCATACATGATATTGATGATTTGGTTTCGCAAGAAATG-
323 GCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACGA
* * *
530035 TTTTTCTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAAAGACAAACTTGGATTCTAG
388 TTTTT-TCCCACCAATTTTGTAAATTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
*
530100 TAAAGATCTTTATTCTTTTAGTG
452 TAAGGATCTTTATTCTTTTAGTG
* * * *
530123 ATTAGGCACTGTAAACACATTCTACTTATTAGGATAATTGATATTGATGGTTTTTTCTTGCATGA
1 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTTT-TTGCATGG
* *
530188 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTTTACTTTAAATGAGACAAGCATTGA
65 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAG-TTTGACTTTAAATAAGACAAGCATTGA
* * * * * * * * *
530253 TTGTTGTAATAGCCTCCATTATTTTTAAAATTGAGAACCAAAAACACATTCCCTTCATTAGGATA
129 TTCTCGTAACAGTCTCCAATATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
**
530318 CATGACATTGATGCTTTGGTGTCACAAGAGAAGCTT-TTCTTTCTGCCATTATTGATAGAATCAA
194 CATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTCTTCTTTCCACCATTATTGATAGAATCAA
* * * * * *
530382 AGTTTGTCTCTGAAATAAAAGAAACTTGAATACTCAAACAAATCCCCATTCTTTTCAAGATTAGG
259 AGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGG
* ** * * * *
530447 TACCATAAACATAGTCTTCTGTTTAGGGTACATGATATTGATGATTTGGTTTCGCAAGAAATGTT
324 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACGAT
* * * *
530512 TTTTTCCCACCAAATTTGTAAATTTTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATCCTAGTA
389 TTTTTCCCACCAATTTTGTAAATTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTA
*
530577 AAGATCTTTATTCTTTTAGTG
454 AGGATCTTTATTCTTTTAGTG
530598 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTTTCTTGCATGG
1 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTTT-TTGCATGG
*
530663 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
65 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTG-ACTTTAAATAAGACAAGCATTGA
* * * * * * * * *
530728 TTGTTGTAATAGCCTCCATTATTTTTAAAATTGAGAACCAAAAACACATTCCCTTCATTAGGATA
129 TTCTCGTAACAGTCTCCAATATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATA
* * *
530793 CATGACATTGATGCTTTGGTGTCGCAAGATCAA-CTT-TTCTTTCCACCGTTATTGATAGAATCA
194 CATGACATTGATGCTTTGGTGTCACAAGA-GAAGCTTCTTCTTTCCACCATTATTGATAGAATCA
* * * *
530856 AAGTTTGTCTCTTAAATATGACAAACATGAATACTCATACTAATCCCCAATCTTTTCAGGATTAG
258 AAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAG
* * * * * *
530921 GTACCATAAACATACTCTTCTCATGAGGATACACGATATTTATGCTTTGGTTTCACAAGAAACGA
323 GCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACGA
* * ** * *
530986 TTTTTTTCCACCAATTTTTGTAAAGTATAAGTTTATTCCTCAAATGAGACAAACATGGATTCTAG
388 TTTTTTCCCACCAA-TTTTGTAAATTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
*
531051 TAAGGATCTTCATTCATTTT-GTG
452 TAAGGATCTTTATTC-TTTTAGTG
* *
531074 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTGTTTTGCATGG
1 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTT-TTTTGCATGG
* * * * * * * * *
531139 AAATATTTTCTTTCCCATAGTTTCCATAAAATAAAAGTTTGACCCTAAAATAAGACAAGCATTGA
65 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGA-CTTTAAATAAGACAAGCATTGA
* * * * * *
531204 TTCTCATAACAGTCTCC-ATCCTATCCAAGATTGGGAACCAAGAACACCTTCCCTTT-ATTAGGA
129 TTCTCGTAACAGTCTCCAAT-ATTTTCAAGATTGGGAACCAAAAACACATT-CCTTTCATTAGGA
* * * *
531267 TACATAACATTGATGCTTTGGTGTCATAAGA-ACAGC-TCTTCTTTCCACCGTTACTGATAGAAT
192 TACATGACATTGATGCTTTGGTGTCACAAGAGA-AGCTTCTTCTTTCCACCATTATTGATAGAAT
* * *
531330 CAAAGTTTGTCTCTGAAATATGAGAAACATGAATACTCATA-TAATCCCCATTCTTTTCAAGATT
256 CAAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATT
* * * * * ** * * *
531394 AGGCACCATAAAAATAGTCTTCACATAATGATACACGATATGGATGCCTTGGTTTCGAAAGCAAT
321 AGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAAC
* * * * ** * *
531459 GCTTTCTTCCCCCCAATTTTTGAAAAGTT-TAAGTTTATGCCTCAAATGAGACAAATATGGATTC
386 GATTTTTTCCCACCAA-TTTTGTAAA-TTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTC
* * *
531523 TAGTAAGTATCTTCT-TTCATTTCGTG
449 TAGTAAGGATCTT-TATTCTTTTAGTG
* * *
531549 ATTAGGCA-TGATAAACACATTCTCCTCATTAGTATAAATGATATTGATGGTTTTTTTAGCA-GG
1 ATTAGGCACT-ATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTTTTTGCATGG
* * * * * * *
531612 AAAATCATTTT-TTTGCCCTATTTTACTTAAAATCAAAGTTCGTCCATTCAATAAGGCAAGCATT
65 -AAATC-TTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTG-ACTTTAAATAAGACAAGCATT
* * * * * *
531676 GATTCTCGTAATAGTCTGCAATCTTTTCAAGAGTGGGAACGAAAAACATATTCCTTTCATTAGGA
127 GATTCTCGTAACAGTCTCCAATATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGA
* * *
531741 TACATGACATTGATGCTTTGGTGT--CAAGAAAAGCTTTTTTTTTCCACCATTATTGATAGAATC
192 TACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTCTTCTTTCCACCATTATTGATAGAATC
* *
531804 AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTATTTTCAGGATTA
257 AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTA
* * * * * * *
531869 GGCACCACAAGCATAGACTTCTCATAAGAATACACGATATTGATGCTTTTGTTTCGCAAGAAAC-
322 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACG
* * * * * * *
531933 ATTTTCTTCCCACCCATTTTTGTAAAGTATAAGTCCGTACCTCAAAGGAGACAAACAAGGGTTCT
387 ATTTT-TTCCCA-CCAATTTTGTAAATTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCT
* * *
531998 GGTAAGGATCTTCATT-TATTTTGTG
450 AGTAAGGATCTTTATTCT-TTTAGTG
* * *
532023 ATTAGGCACTATAAACACATTC-ACCTCCTTAGGATAATTGATATTGATGGTTTTCTTTGGCAT-
1 ATTAGGCACTATAAACACATTCTA-CTCATTAGGATAAATGATATTGATGGTTTT-TTTTGCATG
* * *
532086 GAAACTCTTTTCTGTGCCCTATTTTCCTTAAAATCAAAGTTTGACTCTTAAATAAGAC-AGCATT
64 GAAA-TCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGACT-TTAAATAAGACAAGCATT
* * * *
532150 GATTCCCGTAACAGTCTCCAATCTTTTCAAGATTGGGAACCAAATACACCTTCCTTTCATTAGGA
127 GATTCTCGTAACAGTCTCCAATATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGA
* * * *
532215 TACATCACATTGATGCTTTGGTGCCGCAAGAGAAGCTTCTTTTTTCCACCATTATTGATAGAATC
192 TACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTCTTCTTTCCACCATTATTGATAGAATC
* * *
532280 AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCTATTCATTTCAAAATTA
257 AAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTA
* **
532345 GGCACCATAAACATAGTCTTTTGTTTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACG
322 GGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACG
* * *
532410 CTTTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGGGACAAACATGGATTCTAG
387 ATTTTTTCCCACCAATTTTGTAAATTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAG
532475 TAAGGATCTTTATTCTTTTAGTG
452 TAAGGATCTTTATTCTTTTAGTG
*
532498 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTAATGGTTTTCTTTTGCATGG
1 ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTT-TTTTGCATGG
* *
532563 AAATCTTTTCTTTGCCTTATTTTCCTTAAAAGCAAAGTTTG
65 AAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTG
532604 TAGTAAAAGT
Statistics
Matches: 2171, Mismatches: 265, Indels: 91
0.86 0.10 0.04
Matches are distributed among these distances:
472 7 0.00
473 73 0.03
474 399 0.18
475 993 0.46
476 682 0.31
477 17 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (474 bp):
ATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTTTTTGCATGGA
AATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGACTTTAAATAAGACAAGCATTGATT
CTCGTAACAGTCTCCAATATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACA
TGACATTGATGCTTTGGTGTCACAAGAGAAGCTTCTTCTTTCCACCATTATTGATAGAATCAAAG
TTTGTCTCTAAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCA
CCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGATTTGGTTTCGCAAGAAACGATTT
TTTCCCACCAATTTTGTAAATTATAAGTTCGTGCCTCAAAAGAGACAAACATGGATTCTAGTAAG
GATCTTTATTCTTTTAGTG
Found at i:533605 original size:474 final size:474
Alignment explanation
Indices: 532634--534367 Score: 2500
Period size: 476 Copynumber: 3.6 Consensus size: 474
532624 CACTCATTTC
* * * * *
532634 ATGATTAGGCACTATAAACACATTCTCCTCATCAGCAGACATGATATTGATGGTTTTCTTTTGCA
1 ATGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCA
*
532699 TGGAAATCTTTTATTTGCCTTTTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCAT
66 TGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCAT
* * * * *
532764 TGATTCTTGTAACAGTCTCCATTATTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGA
131 TGATTCTTGTAATAGCCTCCATTATTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTAGG
* ** * *
532829 ATACATCACATTGATGCTTTGGTGTCGTAAGAGAAGCTTCTTTTTTCCCCCATTATTGATAGAAT
196 ATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTT-TTCTTTCCGCCATTATTGATAGAAT
* * * *
532894 CAAAGTTTGTCTCTAAAATAAGACAAACATGAATACTCACACTAATCCCTATTCGTTTCAGAATT
260 CAAAGTTTGTCTCTAAAATAAAACAAACATGAATACTCATACTAATCCC-ATTCTTTTCAGGATT
*
532959 AGGCACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAT
324 AGGTACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAT
*
533024 GTTTTTCTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTA
389 GTTTTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTA
533089 GTAAAGATCTTTATTCTTTTA
454 GTAAAGATCTTTATTCTTTTA
* *
533110 GTGATTAGGCACTGTAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTT-TTCTTGC
1 ATGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTT-TTGC
533174 ATGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCA
65 ATGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCA
* * * *
533239 TTGATTGTTGTAATAGCCTTCATTATTTTTAAAATTGAGAACCAAAAACACATTCCCTTCATTAG
130 TTGATTCTTGTAATAGCCTCCATTATTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTAG
* **
533304 GATACATGACATTGATGCTTTGGTGTCACAAGGGAAGCTTTTCTTTCTACCATTATTGATAGAAT
195 GATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCGCCATTATTGATAGAAT
* * * *
533369 CAAAGTTTGTCTCTAAAATAAAAGAAACATGAATTCTCATACAAATCCCATTCTTTTCCGGATTA
260 CAAAGTTTGTCTCTAAAATAAAACAAACATGAATACTCATACTAATCCCATTCTTTTCAGGATTA
*
533434 GGTACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGATTTCGCAAGAAATG
325 GGTACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAATG
*
533499 TTTTTTTCCCACCAATTTTGTAAATTTTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAG
390 TTTTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAG
533564 TAAAGATCTTTATTCTTTTA
455 TAAAGATCTTTATTCTTTTA
533584 ATGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTT-TTCTTGC
1 ATGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTT-TTGC
*
533648 ATGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTCAATGAGACAAGCA
65 ATGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCA
* * *
533713 TTGATTGTTGTAATAGCCTCCATTATTTTTAAGATTGAGAACGAAAAACACATTCCCTTCATTAG
130 TTGATTCTTGTAATAGCCTCCATTATTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTAG
*
533778 GATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTCTCTTTCCGCCATTATTGATAGAAT
195 GATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCGCCATTATTGATAGAAT
* *
533843 CAAAGTTTGTCTCTGAAATAAAAGAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATT
260 CAAAGTTTGTCTCTAAAATAAAACAAACATGAATACTCATACTAAT-CCCATTCTTTTCAGGATT
* ** * * * ** * *
533908 AGGTACCATAAAGATAGTCTTCTCATAAGGATACACGATATTGCTGCGTTGGTTTCGTAAGAAAC
324 AGGTACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAAT
* * * * * * * **
533973 GCTTTATTCCCACTAATTTTTGAAAAGTCTAAGTTCTTGCCTCAAATGAGACAAACAGGGATTCT
389 GTTTTTTTCCCACCAA-TTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCT
* * * *
534038 AGTAAGGATCTTCATTCATTTC
453 AGTAAAGATCTTTATTCTTTTA
* * * * * *
534060 GTGATTAGGCACTACAAACACATTCTCCTCAGTAGGATAAAAGATATTGATAGTTTTCTTTTGCA
1 ATGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCA
* * * *
534125 TGGAAATCTTTTTTTTGCCTTATTTTCTTTAAAATCAAAGTTTGCACTTTAAATGAGACATGCAT
66 TGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCAT
** * * * * * * * * * *
534190 TGATTCTCATAAAAGTCTCCATTCTTTCCAATAGTGGGAACCAAAAGCACATTTCTTTCATTAGG
131 TGATTCTTGTAATAGCCTCCATTATTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTAGG
* * * * * *
534255 ATATATGACATTGATGCTTTGGTGTCACCAGAAAAGCTTTTCTTTCCGCCGTTATTAACAGAATC
196 ATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCGCCATTATTGATAGAATC
* * * * *
534320 AAAGTTTATCTCTTAAATAAGACAAACATGAATTCTCATATTAATCCC
261 AAAGTTTGTCTCTAAAATAAAACAAACATGAATACTCATACTAATCCC
534368 CAATCTCTTA
Statistics
Matches: 1140, Mismatches: 114, Indels: 9
0.90 0.09 0.01
Matches are distributed among these distances:
474 451 0.40
475 155 0.14
476 532 0.47
477 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.37
Consensus pattern (474 bp):
ATGATTAGGCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCA
TGGAAATCTTTTATTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCAT
TGATTCTTGTAATAGCCTCCATTATTTTCAAGATTGAGAACCAAAAACACATTCCCTTCATTAGG
ATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCGCCATTATTGATAGAATC
AAAGTTTGTCTCTAAAATAAAACAAACATGAATACTCATACTAATCCCATTCTTTTCAGGATTAG
GTACCATAAACATAGTCTTCTGTTTAGGATACATGATATTGATGATTTGGTTTCGCAAGAAATGT
TTTTTTCCCACCAATTTTGTAAATTCTAAGTTCGTGCCTCAAAAGAGACAAACTTGGATTCTAGT
AAAGATCTTTATTCTTTTA
Found at i:534793 original size:158 final size:158
Alignment explanation
Indices: 534628--541884 Score: 560
Period size: 158 Copynumber: 46.1 Consensus size: 158
534618 ATAAGGATGC
* *
534628 ATGATATTGATGCTTTGGTTTCGCAAGAAACA-TTTTCTTCCCACTAATTTTTGAAAAGTCTATG
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTTTGAAAA-TCAAAG
*
534692 TTTGTGCCTCAAATGAGACAAACATGGATTCT-AGTAAGGATCTTCATTCATTTCATGATTAGGC
65 TTTGTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCATTCATTTCATGATTAGGC
**
534756 ATTATAAACACATTCTCCTCATTAAGATAA
129 ACCATAAACACATTCTCCTCATTAAGATAA
* * * * ** * *
534786 ATGATATTGATGATTTTGTTTTGCATGAAA-ATCTTTTCTTTGCTCT-ATTTTCCTTAAAATCAA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACA-CTTTTCTTCCCACTAATTTT--TGAAAATCAA
** * * * ** * *
534849 AGTTTGACCCTAAAATAAGACAAGCATTGATTCTCA-AAACAGT-TTCCA-TCCTTTCCAAGATT
63 AGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTT-CATTCATTT-CATGATT
* * * * *
534911 GGGAACCA-AGAACACATT-TCCTTTATTAGGATAC
125 AGGCACCATA-AACACATTCTCC-TCATTAAGATAA
* * * * * *
534945 ATGACATTGATGCTTTGGTGTCGCAA-AAATAGCTTTTCTTTCCAC-CATTATTGATAGAATCAA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACA-CTTTTCTTCCCACTAATTTTTGA-A-AATCAA
* * * *** ** * *
535008 AGTTTGT-CTCTAAAAT-ATGAGAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTA
63 AGTTTGTGC-CTAAAATGA-GACAAACATGGATTCTCATAAGGATCTTCATTCATTTCATGATTA
* * * * * *
535071 CGCACCATAAACATAGTCTTCTTA-TAATGATAC
126 GGCACCATAAACACATTCTCCTCATTAA-GATAA
* ** * * ** *
535104 ATAATATTGATGCTTTGGTTTCAAAAGAAACAC-TTTCTTGCCC-CCAAATTTTGAAAAGTTTAG
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTT-CCCACTAATTTTTGAAAA-TCAAA
* *
535167 GTTTGTGCCTCAAATGAGAC-AACTATGGATTCT-AGTAAGGATCTTCATTCATTTCGTGATTAG
64 GTTTGTGCCTAAAATGAGACAAAC-ATGGATTCTCA-TAAGGATCTTCATTCATTTCATGATTAG
* *
535230 GCACTATAAACACATTCTCCTCAAT-AGTATAA
127 GCACCATAAACACATTCTCCTCATTAAG-ATAA
* ** * * * *
535262 ATGATATTGATGGTTTTCTTTGGCATGAAA-ATCCTTTT-TTGCC-CT-ATTTTACTTAAAATCA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACA--CTTTTCTTCCCACTAATTTT--TGAAAATCA
* * ** * * * ** * * * *
535323 GAGTTTGTCCCTTCAAT-AAAGCAAGCATTGATTCTTTTAA-CAGTCTCCATTCTTTTCA-AACT
62 AAGTTTGTGCCTAAAATGAGA-CAAACATGGATTCTCATAAGGA-TCTTCATTCATTTCATGA-T
* * * * * * *
535385 TAAGAACCAAAAACATATTC-CCTTCGTTAGGATAC
124 TAGGCACCATAAACACATTCTCC-TCATTAAGATAA
* * * ** * *
535420 ATGACATTGATGCTTTGGTGTCGCAA-AAGA-AGCTTTTCTTTCCAC-CGTTATTGATAGAATTG
1 ATGATATTGATGCTTTGGTTTCGCAAGAA-ACA-CTTTTCTTCCCACTAATTTTTGA-A-AA-TC
* * * * *** ** *
535482 AAA-TTTGT-CTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTC-TGGAT
61 AAAGTTTGTGC-CTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATTTCAT-GAT
* * ** * *
535544 TAGGCACC-TCAAACATAGTCTTTTGA-TAAGAATAC
124 TAGGCACCAT-AAACACATTCTCCTCATTAAG-ATAA
* * * ** * * * *
535579 ATGATATTGATGATTTGGTTTTGCTAGAAATGCTTTT-TTCTCACCAATTTTTGTAAATTCTAAG
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTTTG-AAAATCAAAG
* * * * *
535643 TTCGTGCCTCAAATGAGACAAACATGGATTCT-AGTAAGGATCTTTACTTAATGT-ATGATTAGG
65 TTTGTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCA-TTCATTTCATGATTAGG
** * * *
535706 CAGTATAAATACATTCTCCTAATTACGATAA
128 CACCATAAACACATTCTCCTCATTAAGATAA
* * * * * ** * * *
535737 ATGATATTGATGGTTT-TTATTTGCATGGAAA-TCTTTTCTTTGC-CTTATTTTCCTTAAATTCA
1 ATGATATTGATGCTTTGGT-TTCGCA-AGAAACACTTTTCTTCCCACTAATTTT--TGAAAATCA
* * * ** * * * * * *
535799 AAGTTTGTACTTTAAATGAGACATGCGTTGATTCTTGTAAAAGTATC--CATTC-TTTCTAAGAT
62 AAGTTTGTGCCTAAAATGAGACAAACATGGATTC-T-CATAAGGATCTTCATTCATTTC-ATGAT
* * * *
535861 TGGGAACCGA-AAACACATTCCCCTCATTAAGATAC
124 TAGGCACC-ATAAACACATTCTCCTCATTAAGATAA
* * * * ** * ** ** *
535896 ATGACATTGATGCTTTGGTGTCACAAGAGATGCTTTTCTTTCTGC-CGTTATTGATAGAATCAAA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTTTGA-A-AATCAAA
* * * * ** *
535960 GTTTGT-CTCTTAAATATGAG--AAACACGAATACTCATACA-AATCCCCATTC-TTTCAGGATT
64 GTTTGTGC-C-TAAA-ATGAGACAAACATGGATTCTCATA-AGGATCTTCATTCATTTCATGATT
* * *
536020 AGGCACCATAAACATAGTT-TTCTCA-TAAGGATAC
125 AGGCACCATAAACACA-TTCTCCTCATTAA-GATAA
* * * ** * * * *
536054 ACGATATTGATGCTTTGGCTTCG-ATAAAAATGC-ATTCTTCCCATTAATTTTTGAAATCTCTAA
1 ATGATATTGATGCTTTGGTTTCGCA-AGAAACACTTTTCTTCCCACTAATTTTTGAAA-ATCAAA
* * * * * * * *
536117 GTTTATGCCTCAAATGAAACAAATATGGATTCTAATAAGGATCTTCACTAATTTCGTGATTAGGC
64 GTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATTTCATGATTAGGC
** * *
536182 ACTGTAATCACATTCTCCTCATTAGGATAA
129 ACCATAAACACATTCTCCTCATTAAGATAA
* ** * * * ** *
536212 ATGATATTGATGGTTTTCTTTGGCACGGAAA-TCTTTTCTAT--TTCTTATCTTACTT-AAAATC
1 ATGATATTGATGCTTTGGTTTCGCA-AGAAACACTTTTCT-TCCCACTAAT-TT--TTGAAAATC
* * ** * * * * ** * * * ** *
536273 AAAGTTGGTCCCTTCAATAAGGCAAGCATTGATTCTTGTAA-TAGTCTCCATTCTTTTCAAAAGT
61 AAAGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTTCATTCATTTCATGATT
* * * * * *
536337 AAGAACCAAAAATACATTC-CCTTC-TTTAGAATACC
125 AGGCACCATAAACACATTCTCC-TCATTAAG-ATA-A
** * * * ** * * *
536372 A-GACGTTGATGCTTTTGTGTCACAAG-AGTA-GTTTCTTTTCCACT-ATTATTGATAGAATCAA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTC-TTCCCACTAATTTTTGA-A-AATCAA
* * * * * *** ** ** * * *
536433 AGTTTGT-CTCTTAAATAAGACAAACACGAATACTCATACTAATCCCCATTTTTTTTAGGATAAG
63 AGTTTGTGC-CTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATTTCATGATTAG
* *
536497 GCACCATAAACATAGTCTCCTCA-TAAGGATACA
127 GCACCATAAACACATTCTCCTCATTAA-GATA-A
* * * *
536530 A-GATATTGATGCTTTGGTTTCGCAAGAAACGC-TTTCTTCCCACTGATTTTTGTAAAGT-ATGA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTTTG-AAAATCA-AA
** ** * **
536592 GTTCATTTCTCAAATGAGACAAACATGGATTCTTGTAAGGATCTTCATTCATTTCATGATTAGGC
64 GTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATTTCATGATTAGGC
* * *
536657 ACTATAAACACATTCTCCTTATTAGGATAA
129 ACCATAAACACATTCTCCTCATTAAGATAA
* ** * * * ** * *
536687 ATGATATTGATGGTTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CTTATTTTCCTTAAAATCAA
1 ATGATATTGATGCTTTGGTTTCGCA-AGAAACACTTTTCTTCCCACTAATTTT--TGAAAATCAA
* * * ** * * * *
536750 AGTTTGTACTTTAAATGAGACATGCATTGATTTTCATAA-AAGTC-TCTATTC-TTTCCAAGATT
63 AGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTTC-ATTCATTT-CATGATT
* * ** **
536812 AGGGACCAT----TC-TT-TCCAAGATTGGGA-ACCA
125 AGGCACCATAAACACATTCTCC-TCATTAAGATA--A
* * * * * * * ** ** * *
536842 ATGACACATTCCATTCATTAGG-AT-ACATGACATTGATGCTTTGGTGCCACAAGAGAAGCTTTT
1 ATG--ATATT-GATGC-TTTGGTTTCGCAAGA-A---ACACTTTTCTTCC-C------A-C--TA
* * * ** * *
536905 CTTTCCACCATTACAGATAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACACTAAATACTGAT
48 ATTT------TT---G--AAAATCAAAGTTTGTGC-CTAAAATGAGACAAACA-TGGATTCTCAT
* * * * * * *
536969 ACTA-G-TC-CCATTCTTTTCAGGATTAGGAACCATAAACATAGTT-TTCTCA-TAAGGATAC
100 A--AGGATCTTCATTCATTTCATGATTAGGCACCATAAACACA-TTCTCCTCATTAA-GATAA
* * * * * * * * *
537027 AGGATATTTATGATTTGGTTTCACAAG-AACACTTTTTTTCCCACCAATTTTTTTAAATTCTAAG
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAA-TTTTTGAAAATCAAAG
* * * *
537091 TTTATGCCTCAAATGAGACAAACATGGATTCT-AGTAAGGATCTTCATTCATTTCTTGATTAGGG
65 TTTGTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCATTCATTTCATGATTAGGC
* * *
537155 ACTATACACACATTCTCCTCATTAGGATAA
129 ACCATAAACACATTCTCCTCATTAAGATAA
* * ** * * * ** * * *
537185 ATAATATTGATGGTTTTCTTTTGCATGGAAATA-TTTTCTTTAC-CTTATTTTCCTTAAAATGAA
1 ATGATATTGATGCTTTGGTTTCGCA-AGAAACACTTTTCTTCCCACTAATTTT--TGAAAATCAA
* * ** * * ** * * * * **
537248 AGTTTGTACTTTGAATGACATATGCATTGATTCTCGTAA-AAGTCTCCATTC-TTTCCAAAATTA
63 AGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTTCATTCATTT-CATGATTA
* * * *
537311 GG-AACAAAAACACATTC-CCTTCATTAGGATAC
126 GGCACCATAAACACATTCTCC-TCATTAAGATAA
* * * ** *
537343 ATGAAATTGATGCTTTGGTGTCGCAAGAGAAGC-C-TTTCTTCCCAC-CATTATTAAAAAAATTA
1 ATGATATTGATGCTTTGGTTTCGCAAGA-AA-CACTTTTCTTCCCACTAATT-TT-TGAAAATCA
* ** *** ** * *
537405 ACGTTTGT--CTATGAAA-GAAGACAAACATTAATAT-TCATACTAATCCCCATTCTTTTCAAGA
62 AAGTTTGTGCCTA--AAATG-AGACAAACATGGAT-TCTCATAAGGATCTTCATTCATTTCATGA
* * * * * *
537466 TCA-CCACCATAAACATAGTACT-CTCA-TAAGGACAC
123 TTAGGCACCATAAACACA-TTCTCCTCATTAA-GATAA
* * * ** * * *
537501 AGGATATTGAT-CATTTGGTTTCGTATGAAATGCTTTT-TTCCCTCAAATTTTTGAAAATTCTAA
1 ATGATATTGATGC-TTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTTTGAAAA-TCAAA
* * * * *
537564 GTTCGTACCTCAAATAAGACAAACATAGATTCT-AGTAAGGATCTTCATTCATTTCATGATTAGG
64 GTTTGTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCATTCATTTCATGATTAGG
* * *
537628 CACTATAAGCACATTCTCCTCATTAGGATAA
128 CACCATAAACACATTCTCCTCATTAAGATAA
* ** * * * ** * *
537659 ATGATATTGATGGTTTTCTTTTGCATGGAAA-TCTTTTCTTTGC-CTCATTTTCCTTAAAATCAA
1 ATGATATTGATGCTTTGGTTTCGCA-AGAAACACTTTTCTTCCCACTAATTTT--TGAAAATCAA
*** * ** * * ** * * * * *
537722 AGTTTGTAATTTAAATGAGACATGCATTGATTATTGTAA-AAGTCTCCATTC-TTTCCAAGAGTG
63 AGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTTCATTCATTT-CATGATTA
* * * * * *
537785 GGAACTAAAAACACATTC-CCTTCTTTAGGATAC
126 GGCACCATAAACACATTCTCC-TCATTAAGATAA
* * ** * * * **
537818 ATGACATTGATGCTTTGGTGTCATAAGAGAA-GCTTTTCTTTCCAC-CATTAATGATAAAATCAA
1 ATGATATTGATGCTTTGGTTTCGCAAGA-AACACTTTTCTTCCCACTAATTTTTG--AAAATCAA
* * * * * *** ** *
537881 AGTTTCT--CTTAAAT-AGACAAACATGGGTACTAATACTAATCTAAATTCTTTTC-TAGATTAG
63 AGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATTTCAT-GATTAG
* * *
537942 GCACCATAAACATAGTCTTCTCA-TAAGGATACA
127 GCACCATAAACACATTCTCCTCATTAA-GATA-A
* * * * *
537975 A-GATATTGATGCGTTGGTTTCGCAAGAAAC-GTTTTCTTCCCACCAAGTTTTGTAAAGT-ATAA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTTTG-AAAATCA-AA
* ** * * * *
538037 CTTCATTCCTCAAATGAGACAAACATGGATTCT-AGTAAGGATCTTCATTCATTTCGTGATTAGT
64 GTTTGTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCATTCATTTCATGATTAGG
* *
538101 CACTATAAACACATTCTCCTCATTAGGATAA
128 CACCATAAACACATTCTCCTCATTAAGATAA
* ** * * *
538132 ATGATATTGA-----TGGTTT----------TCTTTTCTTTGC-CTCATTTTCCTTAAAAGCAAA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTT--TGAAAATCAAA
** * * * ** * * * * * *
538181 GTTTGCACTTTAAATTAGACATGCATTGATTCTCGTAA-AAGTCTCCATTC-TTTCCAAGATTGG
64 GTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTTCATTCATTT-CATGATTAG
* * * * *
538244 GAACTAGAAACACATTC-CCTTCATTAGGATAC
127 GCACCATAAACACATTCTCC-TCATTAAGATAA
** ** * * **
538276 ATGACT-TTGATGCTTTGGCGTCGCAAGAGAA-GTTTTTCTTTCCA-TAGTTAATGATAAAATCA
1 ATGA-TATTGATGCTTTGGTTTCGCAAGA-AACACTTTTCTTCCCACTAATTTTTG--AAAATCA
* * * * ** * ** **
538338 ATGTTTCT--CTTAAATAAGACAAACATGGATAGTCATACA-AATCTAAATTC-TTTTGTGGATT
62 AAGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATA-AGGATCTTCATTCATTTCAT-GATT
* * * * *
538399 A-CCACCATAAACATAGTCTTCTCA-TAAGGATAC
125 AGGCACCATAAACACATTCTCCTCATTAA-GATAA
* * * * ** * *
538432 AGGATATTCATGATTTTGTTTCGCAAGAAATTGC-TTT-TTCCCACCAATTTTTGTAAAGT-ATA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAA-CACTTTTCTTCCCACTAATTTTTG-AAAATCA-A
* * ** * * *
538494 AGTTCG-GTCCTCAAATGAGACAAACACAGATT-TTAGT-AGCGATCTTCTTTCATTTCGTGATT
63 AGTTTGTG-CCTAAAATGAGACAAACATGGATTCTCA-TAAG-GATCTTCATTCATTTCATGATT
* *
538556 AGGCACTATAAACACATTCTCCTCATTAGGATAA
125 AGGCACCATAAACACATTCTCCTCATTAAGATAA
* ** * * * * * *
538590 ATGATATTGATGGTTTTCTTTTGCATGGAAA-TCTTTTCTTTGCC-TTACTTTCCTT-AAAATCA
1 ATGATATTGATGCTTTGGTTTCGCA-AGAAACACTTTTC-TTCCCACTAATTT--TTGAAAATCA
* * ** ** * * * * **
538652 AAGTTTGTACTTTGAATGAGACATGCATTGATTCTCGTAA-AAGTCTCCATTC-TTTCCAAAATT
62 AAGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTTCATTCATTT-CATGATT
* * * *
538715 A-GAACCAAAAACACTTTC-CCTTCATTAGGATACA
125 AGGCACCATAAACACATTCTCC-TCATTAAGATA-A
* * ** * * * * * **
538749 A-GACATTGATGCTTTGGTGTCGCAAG--ATGCTATTCATACAATCAAAGTTTGCCTTTTAAA--
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCA-CTAA-TTT---TTGAAAATC
***** * ** * * * * ** *
538809 AAAG-ACAAACCT-GAAT-ACTCATAC-T-AATCCCCAT-----TCTT--TT--TTGGAT-T--A
61 AAAGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATTTCATGATTA
* * * * * *
538857 GGCACCATAAACATAGTCTTCTTATAT-GGATAC
126 GGCACCATAAACACATTCTCCTCAT-TAAGATAA
* * * * * *
538890 AGGATATTGATGATTTGGTTTCGCAAG-AAC-GTTTTTTTCCCA-TAATTTTTGTAAATTCTAAG
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTTTG-AAAATCAAAG
* * * * *
538952 TTCGTGCCTTAAATGAGACTAACATGGATTCT-AGTAACGATCTTCATTCACTTT-GTGATTAGG
65 TTTGTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCATTCA-TTTCATGATTAGG
* * * *
539015 CACTATAAACATATTTTCCTCATTAGGATAA
128 CACCATAAACACATTCTCCTCATTAAGATAA
* * ** ** * * ** * *
539046 ATGATTTTGATGGTTTTCTTTTTCATGGAAA-TCTTTTCTTTGC-CTTATTTTCCTTAAAATCAA
1 ATGATATTGATGCTTTGGTTTCGCA-AGAAACACTTTTCTTCCCACTAATTTT--TGAAAATCAA
* * * * ** * * * * * *
539109 ACTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAA-AAGTCTCCATTCATTTCAAGATTGG
63 AGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTTCATTCATTTCATGATTAG
* * * **
539173 GAACCAAAAACACATTC-CCTTCATTAGGATTC
127 GCACCATAAACACATTCTCC-TCATTAAGATAA
** * * * * ** * *
539205 ATGGCATTGATGCTTTGGTGTCGCAAGAGAA-GCTGTTCTCCCCAC-CGTTATTGATAGAAGCAA
1 ATGATATTGATGCTTTGGTTTCGCAAGA-AACACTTTTCTTCCCACTAATTTTTGA-A-AATCAA
* * * ** *** ** * *
539268 AGTTTGT-CGCTTAAATAAGACAAACATGAATAGTCATACTAATCCACGTTCTTTTC-TGGATTA
63 AGTTTGTGC-CTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATTTCAT-GATTA
* * * *
539331 GGCACCATAAACATAGTCTTCTCA-TAAGGATAC
126 GGCACCATAAACACATTCTCCTCATTAA-GATAA
* * * ** * **
539364 ATGGTATTGATGCTTTGTTTTCGTAAGAAATGC-TTTCTTCCCACCAATTTTTGAAAAGTGTAAG
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTTTGAAAA-TCAAAG
** * * * * *
539428 TTCATTCCTCAAATGAGACAAACAAGGATTCT-AGTAAGGATCATCATTCATTTCATGACTAGGC
65 TTTGTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCATTCATTTCATGATTAGGC
** * * * *
539492 ACTTTGAACACATTCTCCCCAATAGGATAA
129 ACCATAAACACATTCTCCTCATTAAGATAA
** * **
539522 ATGATATTGATAG-TTTTCTTTTGCCTGAAA-ATCTTTTCTTTGCCTCACT--TTCTTT-AAAAT
1 ATGATATTGAT-GCTTTGGTTTCGCAAGAAACA-CTTTTC-TT-CC-CACTAATT-TTTGAAAAT
* * * * * ** * *
539582 CAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTTGTAA-AAGTCTCCATTC-TTTCCATGA
60 CAAAGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTTCATTCATTT-CATGA
* * * * * *
539645 TTGGGAACTAAAAACACATTC-CCTTCATTAGGATAC
123 TTAGGCACCATAAACACATTCTCC-TCATTAAGATAA
* * * * * *
539681 ATGACATTGATGCTTTGGTGTGGCAAGAGAA-GCTTTTCTTTCCA--ACATTATTGATAAAATCA
1 ATGATATTGATGCTTTGGTTTCGCAAGA-AACACTTTTCTTCCCACTA-ATTTTTG--AAAATCA
* * ** * * *** * * *
539743 AAGTTTCT-CTCTGAAAA-AAGACAAATGTGAATACTCATACTAAT-TCCCATTC-TTTCAGGAC
62 AAGTTTGTGC-CT-AAAATGAGACAAACATGGATTCTCATAAGGATCT-TCATTCATTTCATGAT
* * * * * *
539804 TAGGCACCATAAACATAGTCTTCTTA-TACGGATAC
124 TAGGCACCATAAACACATTCTCCTCATTA-AGATAA
* * * ** * * * *
539839 AGGATATTGATGATTTGGTTTCGCTAGAAATGCCTTT-TTCCCA-TAATTTTTGAAGATTCTATG
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTTTGAA-AATCAAAG
** * * * * *
539902 TTCATGGCTCAAATGAGACAAACATGGATTCT-AGAAAGGATCTTCTTTCATTTCGTGATTAGGC
65 TTTGTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCATTCATTTCATGATTAGGC
* * * **
539966 ACTATAAACACATTCTCCTCATCAGGATGC
129 ACCATAAACACATTCTCCTCATTAAGATAA
* ** * * ** * *
539996 ATGATATTGATGGTTTTCTTTTGCATGAAA-ATCTTTTCTTTGC-CTTATTTTCCTTAAAATCAA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACA-CTTTTCTTCCCACTAATTTT--TGAAAATCAA
* * * * ** * * * * *
540059 AATTTGTACTTTAAATGAGACATGCATTGATTCTCGCA-AAAG-TC-TCTATTCTTTTTAAGATT
63 AGTTTGTGCCTAAAATGAGACAAACATGGATTCT--CATAAGGATCTTC-ATTCATTTCATGATT
* * * * *
540121 GGGAACCAAAAACACATTC-CCATCATTAGGATAC
125 AGGCACCATAAACACATTCTCC-TCATTAAGATAA
* * *
540155 ATGACATTGATGCTTTGGTGTT-GCAAG----AC-GTTATT----C--A----T-AAAATCAAAG
1 ATGATATTGATGCTTTGGT-TTCGCAAGAAACACTTTTCTTCCCACTAATTTTTGAAAATCAAAG
* * * * * * *** ** *
540203 TTTGT-CTTTTAAATAAGACAAACTTGAATACTCATACTAATCCCCATTCCTTTC-TGGATTAGG
65 TTTGTGC-CTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATTTCAT-GATTAGG
* * * * * * *
540266 CACCCTAAACATACTCTTCTTA-TACGGATAC
128 CACCATAAACACATTCTCCTCATTA-AGATAA
* * * * *
540297 AGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTT-TTCCCA-TAATTTTTGTAAATTCTAAG
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTTTG-AAAATCAAAG
* * * * * *
540360 TTCGTGCCTCAAATGTGACACACATGGATTCT-AGTAAGGATCGTCATTCATTTCGTGATTAGGC
65 TTTGTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCATTCATTTCATGATTAGGC
* *
540424 ACTATAAACACATTCTCCTCATTAGGATAA
129 ACCATAAACACATTCTCCTCATTAAGATAA
* * * ** * *
540454 ATGAAATTGATGGTTT--TCTTCTGCATAGAAA-TCTTTTCTTTGC-CTCATTTTCCTTAAAATC
1 ATGATATTGATGCTTTGGT-TTC-GCA-AGAAACACTTTTCTTCCCACTAATTTT--TGAAAATC
* * * * * ** * * *
540515 AAAGTTTCTACTTTAATTGAGACATGCATTGATTCTCGTAA-AAGTC-TCAATTC-TTTCTAAT-
61 AAAGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTTC-ATTCATTTC--ATG
* * * *
540576 ATT-GGGATCCA-AGAACACATTC-CCTTTATTACGATAC
122 ATTAGGCA-CCATA-AACACATTCTCC-TCATTAAGATAA
* * * ** * * * * *
540613 ATGACAATAATGCTTTGGTGCCACAAGAGAATA-TTTTCTTTCCACT-GTTATTGATAGAATCAA
1 ATGATATTGATGCTTTGGTTTCGCAAGA-AACACTTTTCTTCCCACTAATTTTTGA-A-AATCAA
** * * * * *** **
540676 AGTTTGTGTTTTAAATAAGACAAACATGAATACTCATACTAATCCACATTC-TTGTC-TGGATTA
63 AGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATT-TCAT-GATTA
* * ** * * *
540739 GGCACCGTAAACATAGGCTTCT-AATAAGGATAC
126 GGCACCATAAACACATTCTCCTCATTAA-GATAA
* * * * * *
540772 ATGATGTTGATGCTTTGGTTTCGCCAGAAACGC-TTTCTT-CCACCCAATTTTCCT-AAATTCTA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCA-CTAATTTT--TGAAAATCAA
* * * *
540834 A-TTTCGCGCCTCAAATGAGACAAACATGGATT-TTAGTAAGGATTTTCATTCATTTCATGATTA
63 AGTTT-GTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCATTCATTTCATGATTA
* * *
540897 GGCACTATAAA-ACATTCTCCACATTAGGATAA
126 GGCACCATAAACACATTCTCCTCATTAAGATAA
* ** * * * *
540929 ATGATACTGATGCTTTTTTTTTTTTTGCAAGAAA-ATCTTTTCTAT-GC-CTTATTTTCCTTAAA
1 ATGATATTGATGC----TTTGGTTTCGCAAGAAACA-CTTTTCT-TCCCACTAATTTT--TGAAA
* * * ** * * * *
540991 ATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAA-AAGT-TTCCATTCTTTTCAA
58 ATCAAAGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTT-CATTCATTTCAT
* * * * * * *
541054 GATTGGGAACCAAAAACACATTC-CTTTAATTAGGATAC
121 GATTAGGCACCATAAACACATTCTC-CTCATTAAGATAA
* ** * * ** ** *
541092 ATGACATTGATGCTTTAGG-GCCGCAAGAAA-AGGTTTTCTTCCTAC-CGTTACTGATAGAATCG
1 ATGATATTGATGCTTT-GGTTTCGCAAGAAACA-CTTTTCTTCCCACTAATTTTTGA-A-AATCA
* * * * * * * *** ** * *
541154 CAG-TTGT-CTCTTAAATAAGACAAACTTGAATACTCACACTAATCCCCATTCTTTTCAGGATTA
62 AAGTTTGTGC-CTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATTTCATGATTA
* * * * * *
541217 GGCACCATAAACATAATCTTCTCATCAGGATAC
126 GGCACCATAAACACATTCTCCTCATTAAGATAA
* * ** * * *
541250 ATGATATTGATGCTTTGGTTTCACAAGATATGC-TTTCATCCCGCCT-ATTTTTGCAAAGT-ATA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCC-ACTAATTTTTG-AAAATCA-A
** * * * * **
541312 AGTTCATTCCTCAAATTAGACAAACATGGATTCT-AGTAAGGATCTTCGTTCATTTTGTGATTAG
63 AGTTTGTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCATTCATTTCATGATTAG
* *
541376 GCACTATAAACACATTCTCCTCATTAGGATAA
127 GCACCATAAACACATTCTCCTCATTAAGATAA
* ** * * * * *
541408 ATGATATTGATGGTTTTTTTTTTGCATGAAA-ATCTTCTTTTTGCCTCGT--TTTCCTT-AAAAT
1 ATGATATTGAT-GCTTTGGTTTCGCAAGAAACA-CTT-TTCTTCCCAC-TAATTT--TTGAAAAT
* * * * ** * * *
541469 CAAAGTTTGTACTTTAATTGAGACATGCATTGATTCTCATAA-AAGTCTCCATTC-TTTCTAAT-
60 CAAAGTTTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGA-TCTTCATTCATTTC--ATG
* * * * *
541531 ATTGGGAACCA-AGAACACATTC-CCTTTATTAGGATAC
122 ATTAGGCACCATA-AACACATTCTCC-TCATTAAGATAA
* * * * * *
541568 ATGACATTGATGCTTTGGTGTCACAAGAAA-AGCTTTTCTTTCCAC-CATTATTGATAGAATCAA
1 ATGATATTGATGCTTTGGTTTCGCAAGAAACA-CTTTTCTTCCCACTAATTTTTGA-A-AATCAA
* * * ** *
541631 AGTTTGT-CTCTTAAATAAGAAAAACATAAATACTCAT-----TCTT--TTC---T-A-GATTAG
63 AGTTTGTGC-CTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATTTCATGATTAG
** * * * *
541683 GCACCATAAACTTAGTCTTCT-AATAAGGATAC
127 GCACCATAAACACATTCTCCTCATTAA-GATAA
* * * *
541715 ATGATATTGATGCTTTGG-TTCTACAAGAAACAC-TTTCTTCCTC-CCAATTTTTGTAAACTCTA
1 ATGATATTGATGCTTTGGTTTC-GCAAGAAACACTTTTCTTCC-CACTAATTTTTG-AAAATCAA
* * * * * * * *
541777 AGTTCGTGTCTTAAATGAGACAAGCATTGATTGT-AGTAAGGATCTTTACTCATTTCATGATTAG
63 AGTTTGTGCCTAAAATGAGACAAACATGGATTCTCA-TAAGGATCTTCATTCATTTCATGATTAG
* * * **
541841 GCACTATAAACACATTCTCCTCATCAGGATGC
127 GCACCATAAACACATTCTCCTCATTAAGATAA
541873 ATGATATTGATG
1 ATGATATTGATG
541885 GTTTTCTTTT
Statistics
Matches: 4942, Mismatches: 1582, Indels: 1150
0.64 0.21 0.15
Matches are distributed among these distances:
136 2 0.00
137 2 0.00
139 6 0.00
140 8 0.00
141 11 0.00
142 139 0.03
143 19 0.00
144 90 0.02
145 6 0.00
146 47 0.01
147 58 0.01
148 7 0.00
149 9 0.00
150 1 0.00
151 8 0.00
152 3 0.00
153 18 0.00
154 20 0.00
155 75 0.02
156 229 0.05
157 510 0.10
158 1619 0.33
159 1586 0.32
160 195 0.04
161 62 0.01
162 67 0.01
163 35 0.01
169 3 0.00
170 2 0.00
171 1 0.00
172 5 0.00
176 1 0.00
177 1 0.00
178 9 0.00
180 1 0.00
181 51 0.01
182 16 0.00
183 8 0.00
184 1 0.00
185 3 0.00
186 3 0.00
187 5 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (158 bp):
ATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTCTTCCCACTAATTTTTGAAAATCAAAGT
TTGTGCCTAAAATGAGACAAACATGGATTCTCATAAGGATCTTCATTCATTTCATGATTAGGCAC
CATAAACACATTCTCCTCATTAAGATAA
Found at i:535560 original size:475 final size:475
Alignment explanation
Indices: 534417--542030 Score: 8839
Period size: 475 Copynumber: 16.1 Consensus size: 475
534407 GATTTTGTTT
* * * * * * * *
534417 TCCATTCTTTCCAAGATTTGGAACCAAGAACACATTCCATTTATTAGAATACATGGCATTGATAC
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
534482 TTTGGTGTTGCAA-AAATAGCTTTTCTTTCCACCGTTATTGATAGAATTAAAGTTTTTCTCTTAA
66 TTTGGTGTCGCAAGAGA-AGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
534546 ATAAGACAAACATGAATACTCATACCAATCCCCATTCTATTT-AGGATTAGGCACCATCAACCTA
130 ATAAGACAAACATGAATACTCATACTAATCCCCATTCT-TTTCTGGATTAGGCACCATAAACATA
** * ** *
534610 CCCTTCTCATAAGGATGCATGATATTGATGCTTTGGTTTCGCAAGAAACATTTTCTTCCCACTAA
194 GTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAA
* * * *
534675 TTTTTGAAAAGTCTATGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
259 TTTTTGTAAA-TTTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
* * * * *
534740 CATTTCATGATTAGGCATTATAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTGT
323 CATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCT
* * *
534805 TTTGCATGAAAATCTTTTCTTTG-CTCTATTTTCCTTAAAATCAAAGTTTG-ACCCTAAAATAAG
388 TTTGCATGAAAATCTTTTCTTTGCCT-TATTTTCCTTAAAATCAAAGTTTGTA-CTTTAAATGAG
* * *
534868 ACAAGCATTGATTCTC-AAAACAGTT
451 ACATGCATTGATTCTCGTAAA-AGTC
* * * * *
534893 TCCATCCTTTCCAAGATTGGGAACCAAGAACACATTTCCTTTATTAGGATACATGACATTGATGC
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * *
534958 TTTGGTGTCGCAA-AAATAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTAAA
66 TTTGGTGTCGCAAGAGA-AGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
535022 ATATGAGAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTACGCACCATAAACATAG
130 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAG
* * * ** *
535087 TCTTCTTATAATGATACATAATATTGATGCTTTGGTTTCAAAAGAAACACTTTCTTGCCC-CCAA
195 TCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTT-CCCACCAA
* * * *
535151 ATTTTGAAAAGTTTAGGTTTGTGCCTCAAATGAGAC-AACTATGGATTCTAGTAAGGATCTTCAT
259 TTTTTGTAAA-TTTAAGTTCGTGCCTCAAATGAGACAAAC-ATGGATTCTAGTAAGGATCTTCAT
* *
535215 TCATTTCGTGATTAGGCACTATAAACACATTCTCCTCAATAGTATAAATGATATTGATGGTTTTC
322 TCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
* * * * * * * * *
535280 TTTGGCATGAAAATCCTTT-TTTGCCCTATTTTACTTAAAATCAGAGTTTGTCCCTTCAAT-AAA
387 TTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGA
* ** *
535343 GCAAGCATTGATTCTTTTAACAGTC
452 -CATGCATTGATTCTCGTAAAAGTC
** * *
535368 TCCATTCTTTTCAA-ACTTAAGAACCAAAAACATATTCCCTTCGTTAGGATACATGACATTGATG
1 TCCATTCTTTTCAAGA-TTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* *
535432 CTTTGGTGTCGCAAAAGAAGCTTTTCTTTCCACCGTTATTGATAGAATTGAAA-TTTGTCTCTTA
65 CTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAA-TCAAAGTTTGTCTCTTA
535496 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACC-TCAAACAT
129 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCAT-AAACAT
* * * * * * * * *
535560 AGTCTTTTGATAAGAATACATGATATTGATGATTTGGTTTTGCTAGAAATGCTTTTTTCTCACCA
193 AGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCA
*
535625 ATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTTAC
258 ATTTTTGTAAATT-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCA-
* * * * * * *
535690 TTAATGT-ATGATTAGGCAGTATAAATACATTCTCCTAATTACGATAAATGATATTGATGGTTTT
321 TTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTT
* *
535754 -TATTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAATTCAAAGTTTGTACTTTAAATGA
386 CT-TTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGA
* * *
535818 GACATGCGTTGATTCTTGTAAAAGTA
450 GACATGCATTGATTCTCGTAAAAGTC
* * *
535844 TCCATTC-TTTCTAAGATTGGGAACCGAAAACACATTCCCCTCATTAAGATACATGACATTGATG
1 TCCATTCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * **
535908 CTTTGGTGTCACAAGAGATGCTTTTCTTTCTGCCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
65 CTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
* * * * *
535973 ATATGAGAAACACGAATACTCATACAAATCCCCATTC-TTTCAGGATTAGGCACCATAAACATAG
130 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAG
* * * * * * **
536037 TTTTCTCATAAGGATACACGATATTGATGCTTTGGCTTCG-ATAAAAATGCATTCTTCCCATTAA
195 TCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCA-AGAAACGCTTTCTTCCCACCAA
** * * * *
536101 TTTTTG-AAATCTCTAAGTTTATGCCTCAAATGAAACAAATATGGATTCTAATAAGGATCTTCAC
259 TTTTTGTAAAT-T-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCAT
* * *
536165 TAATTTCGTGATTAGGCACTGTAATCACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
322 TCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
* * * * * * * * * * *
536230 TTTGGCACGGAAATCTTTTCTATT-TCTTATCTTACTTAAAATCAAAGTTGGTCCCTTCAATAAG
387 TTTTGCATGAAAATCTTTTCT-TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAG
* * * *
536294 GCAAGCATTGATTCTTGTAATAGTC
451 ACATGCATTGATTCTCGTAAAAGTC
* * ** * * * *
536319 TCCATTCTTTTCAAAAGTAAGAACCAAAAATACATTCCCTTCTTTAGAATACCA-GACGTTGATG
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA-CATGACATTGATG
* * * **
536383 CTTTTGTGTCACAAGAGTAG--TTTCTTTTCCACTATTATTGATAGAATCAAAGTTTGTCTCTTA
65 CTTTGGTGTCGCAAGAGAAGCTTTTC-TTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTA
* * *
536446 AATAAGACAAACACGAATACTCATACTAATCCCCATT-TTTTTTAGGATAAGGCACCATAAACAT
129 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCT-GGATTAGGCACCATAAACAT
* * **
536510 AGTCTCCTCATAAGGATACAAGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACTG
193 AGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCA
* * * ** *
536575 ATTTTTGTAAAGTATGAGTTCATTTCTCAAATGAGACAAACATGGATTCTTGTAAGGATCTTCAT
258 ATTTTTGTAAA-TTTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCAT
* *
536640 TCATTTCATGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTGATGGTTTTC
322 TCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
*
536705 TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGA
387 TTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGA
* *
536770 CATGCATTGATTTTCATAAAAGTCTCTATTC
452 CATGCATTGATTCTCGTAAAAG-------TC
** *
536801 TTTCCAAGATTAGGGACCATTCTTTCCAAGATTGGGAACCAATGACACATTCCATTCATTAGGAT
1 --TCC---ATT------C--T-TTT-CAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
* * * ** *
536866 ACATGACATTGATGCTTTGGTGCCACAAGAGAAGCTTTTCTTTCCACCATTACAGATAAAATCAA
51 ACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAA
* * * *
536931 AGTTTGTCTCTTAAATAAGACAAACACTAAATACTGATACTAGT-CCCATTCTTTTCAGGATTAG
116 AGTTTGTCTCTTAAATAAGACAAACA-TGAATACTCATACTAATCCCCATTCTTTTCTGGATTAG
* * * * * *
536995 GAACCATAAACATAGTTTTCTCATAAGGATACAGGATATTTATGATTTGGTTTCACAAGAACAC-
180 GCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAA-ACG
* * * **
537059 TTTTTTTCCCACCAATTTTTTTAAATTCTAAGTTTATGCCTCAAATGAGACAAACATGGATTCTA
244 CTTTCTTCCCACCAATTTTTGTAAATT-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTA
* * * *
537124 GTAAGGATCTTCATTCATTTCTTGATTAGGGACTATACACACATTCTCCTCATTAGGATAAATAA
308 GTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGA
* * * *
537189 TATTGATGGTTTTCTTTTGCATGGAAATATTTTCTTTACCTTATTTTCCTTAAAATGAAAGTTTG
373 TATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTG
* * *
537254 TACTTTGAATGACATATGCATTGATTCTCGTAAAAGTC
438 TACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTC
* * * *
537292 TCCATTCTTTCCAAAATTAGGAA-CAAAAACACATTCCCTTCATTAGGATACATGAAATTGATGC
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * * * * *
537356 TTTGGTGTCGCAAGAGAAGCCTTTCTTCCCACCATTATTAAAAAAATTAACGTTTGTCTATGAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * * ** * *
537421 GAAGACAAACATTAATATTCATACTAATCCCCATTCTTTTCAAGATCA-CCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * * * * *
537485 AC-TCTCATAAGGACACAGGATATTGAT-CATTTGGTTTCGTATGAAATGCTTTTTTCCCTCAAA
196 -CTTCTCATAAGGATACATGATATTGATGC-TTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAA
* * * *
537548 TTTTTGAAAATTCTAAGTTCGTACCTCAAATAAGACAAACATAGATTCTAGTAAGGATCTTCATT
259 TTTTTGTAAATT-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
* *
537613 CATTTCATGATTAGGCACTATAAGCACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCT
323 CATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCT
* * *
537678 TTTGCATGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTAATTTAAATGAGAC
388 TTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAC
* *
537743 ATGCATTGATTATTGTAAAAGTC
453 ATGCATTGATTCTCGTAAAAGTC
* * * *
537766 TCCATTCTTTCCAAGAGTGGGAACTAAAAACACATTCCCTTCTTTAGGATACATGACATTGATGC
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
** * * *
537831 TTTGGTGTCATAAGAGAAGCTTTTCTTTCCACCATTAATGATAAAATCAAAG-TT-TCTCTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
** * *** *
537894 T-AGACAAACATGGGTACTAATACTAATCTAAATTCTTTTCTAGATTAGGCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * *
537958 CTTCTCATAAGGATACAAGATATTGATGCGTTGGTTTCGCAAGAAACGTTTTCTTCCCACCAAGT
196 CTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATT
* * * *
538023 TTTGTAAAGTATAACTTCATTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
261 TTTGTAAA-TTTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
*
538088 TTTCGTGATTAGTCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGG-------T
325 TTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTT
* * * *
538146 T---T-----TCTTTTCTTTGCCTCATTTTCCTTAAAAGCAAAGTTTGCACTTTAAATTAGACAT
390 TGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAT
538203 GCATTGATTCTCGTAAAAGTC
455 GCATTGATTCTCGTAAAAGTC
* * * *
538224 TCCATTCTTTCCAAGATTGGGAACTAGAAACACATTCCCTTCATTAGGATACATGACTTTGATGC
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * ** * * *
538289 TTTGGCGTCGCAAGAGAAGTTTTTCTTTCCATAGTTAATGATAAAATCAATG-TT-TCTCTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * * *** * *
538352 TAAGACAAACATGGATAGTCATACAAATCTAAATTCTTTTGTGGATTA-CCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * *
538416 CTTCTCATAAGGATACAGGATATTCATGATTTTGTTTCGCAAGAAATTGCTTT-TTCCCACCAAT
196 CTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA-CGCTTTCTTCCCACCAAT
* ** * *
538480 TTTTGTAAAGTATAAGTTCG-GTCCTCAAATGAGACAAACACAGATTTTAGT-AGCGATCTTCTT
260 TTTTGTAAA-TTTAAGTTCGTG-CCTCAAATGAGACAAACATGGATTCTAGTAAG-GATCTTCAT
538543 TCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
322 TCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
* * *
538608 TTTTGCATGGAAATCTTTTCTTTGCCTTACTTTCCTTAAAATCAAAGTTTGTACTTTGAATGAGA
387 TTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGA
538673 CATGCATTGATTCTCGTAAAAGTC
452 CATGCATTGATTCTCGTAAAAGTC
* * * * *
538697 TCCATTCTTTCCAAAATT-AGAACCAAAAACACTTTCCCTTCATTAGGATACAAGACATTGATGC
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * *
538761 TTTGGTGTCGC-A-AG-A---------T-----GCTATTCATACAATCAAAGTTTGCCTTTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * *
538809 AAAGACAAACCTGAATACTCATACTAATCCCCATTCTTTTTTGGATTAGGCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * * * *
538874 CTTCTTATATGGATACAGGATATTGATGATTTGGTTTCGCAAG-AACGTTTTTTTCCCA-TAATT
196 CTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATT
* * *
538937 TTTGTAAATTCTAAGTTCGTGCCTTAAATGAGACTAACATGGATTCTAGTAACGATCTTCATTCA
261 TTTGTAAATT-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
* * *
539002 CTTT-GTGATTAGGCACTATAAACATATTTTCCTCATTAGGATAAATGATTTTGATGGTTTTCTT
325 -TTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTT
* * *
539066 TTTCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAACTTTGTACTTTAAATGAGACA
389 TTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACA
539131 TGCATTGATTCTCGTAAAAGTC
454 TGCATTGATTCTCGTAAAAGTC
* * *
539153 TCCATTCATTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATTCATGGCATTGATGC
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* ** * *
539218 TTTGGTGTCGCAAGAGAAGCTGTTCTCCCCACCGTTATTGATAGAAGCAAAGTTTGTCGCTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * *
539283 TAAGACAAACATGAATAGTCATACTAATCCACGTTCTTTTCTGGATTAGGCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * *
539348 CTTCTCATAAGGATACATGGTATTGATGCTTTGTTTTCGTAAGAAATGCTTTCTTCCCACCAATT
196 CTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATT
* * * * * *
539413 TTTGAAAAGTGTAAGTTCATTCCTCAAATGAGACAAACAAGGATTCTAGTAAGGATCATCATTCA
261 TTTGTAAA-TTTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
* * * * * * *
539478 TTTCATGACTAGGCACTTTGAACACATTCTCCCCAATAGGATAAATGATATTGATAGTTTTCTTT
325 TTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTT
* * * * *
539543 TGCCTGAAAATCTTTTCTTTGCCTCACTTTCTTTAAAATCAAAGTTTGTACTTTAAATGAGACAA
390 TGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAT
*
539608 GCATTGATTCTTGTAAAAGTC
455 GCATTGATTCTCGTAAAAGTC
* * *
539629 TCCATTCTTTCCATGATTGGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * *
539694 TTTGGTGTGGCAAGAGAAGCTTTTCTTTCCAACATTATTGATAAAATCAAAGTTTCTCTCTGAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* ** * * *
539759 AAAGACAAATGTGAATACTCATACTAATTCCCATTC-TTTCAGGACTAGGCACCATAAACATAGT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * * * *
539823 CTTCTTATACGGATACAGGATATTGATGATTTGGTTTCGCTAGAAATGCCTTT-TTCCCA-TAAT
196 CTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACG-CTTTCTTCCCACCAAT
* * * * *
539886 TTTTG-AAGATTCTATGTTCATGGCTCAAATGAGACAAACATGGATTCTAGAAAGGATCTTCTTT
260 TTTTGTAA-ATT-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
* **
539950 CATTTCGTGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCT
323 CATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCT
*
540015 TTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTTGTACTTTAAATGAGAC
388 TTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAC
*
540080 ATGCATTGATTCTCGCAAAAGTC
453 ATGCATTGATTCTCGTAAAAGTC
* * *
540103 TCTATTCTTTTTAAGATTGGGAACCAAAAACACATTCCCATCATTAGGATACATGACATTGATGC
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
540168 TTTGGTGTTGC-----AAG-----------A-CGTTATTCATAAAATCAAAGTTTGTCTTTTAAA
66 TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
* * * *
540216 TAAGACAAACTTGAATACTCATACTAATCCCCATTCCTTTCTGGATTAGGCACCCTAAACATACT
131 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
* * * * * *
540281 CTTCTTATACGGATACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCA-TAATT
196 CTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATT
* * *
540345 TTTGTAAATTCTAAGTTCGTGCCTCAAATGTGACACACATGGATTCTAGTAAGGATCGTCATTCA
261 TTTGTAAATT-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCA
* *
540410 TTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGAAATTGATGGTTTTCTTC
325 TTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTT
* * *
540475 TGCAT-AGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTCTACTTTAATTGAGACA
390 TGCATGA-AAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACA
540539 TGCATTGATTCTCGTAAAAGTC
454 TGCATTGATTCTCGTAAAAGTC
* * * * * * * *
540561 TCAATTC-TTTCTAATATTGGGATCCAAGAACACATTCCCTTTATTACGATACATGACAATAATG
1 TCCATTCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * ** * * *
540625 CTTTGGTGCCACAAGAGAATATTTTCTTTCCACTGTTATTGATAGAATCAAAGTTTGTGTTTTAA
65 CTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
* * *
540690 ATAAGACAAACATGAATACTCATACTAATCCACATTCTTGTCTGGATTAGGCACCGTAAACATAG
130 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAG
* * * *
540755 GCTTCTAATAAGGATACATGATGTTGATGCTTTGGTTTCGCCAGAAACGCTTTCTT-CCACCCAA
195 TCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCA-CCAA
** * * * *
540819 TTTTCCTAAATTCTAATTTCGCGCCTCAAATGAGACAAACATGGATTTTAGTAAGGATTTTCATT
259 TTTTTGTAAATT-TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
* * * *
540884 CATTTCATGATTAGGCACTATAAA-ACATTCTCCACATTAGGATAAATGATACTGATGCTTTTTT
323 CATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG----GTT
* * *
540948 TTTTTTTGCAAGAAAATCTTTTCTATGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATG
384 TTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATG
* *
541013 AGACATGCATTGATTCTCATAAAAGTT
449 AGACATGCATTGATTCTCGTAAAAGTC
* *
541040 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTAATTAGGATACATGACATTGATGC
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * **
541105 TTTAGG-GCCGCAAGAAAAGGTTTTC-TTCCTACCGTTACTGATAGAATCGCAG-TTGTCTCTTA
66 TTT-GGTGTCGCAAGAGAAGCTTTTCTTTCC-ACCGTTATTGATAGAATCAAAGTTTGTCTCTTA
* * *
541167 AATAAGACAAACTTGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
129 AATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATA
* * * * * * * *
541232 ATCTTCTCATCAGGATACATGATATTGATGCTTTGGTTTCACAAGATATGCTTTCATCCCGCCTA
194 GTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAA
* * * * * *
541297 TTTTTGCAAAGTATAAGTTCATTCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCGTT
259 TTTTTGTAAA-TTTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
* *
541362 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTTT
323 CATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGG-TTTTC
** *
541427 TTTTGCATGAAAATCTTCTT-TTTGCCTCGTTTTCCTTAAAATCAAAGTTTGTACTTTAATTGAG
387 TTTTGCATGAAAATCTT-TTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAG
*
541491 ACATGCATTGATTCTCATAAAAGTC
451 ACATGCATTGATTCTCGTAAAAGTC
* * *
541516 TCCATTC-TTTCTAATATTGGGAACCAAGAACACATTCCCTTTATTAGGATACATGACATTGATG
1 TCCATTCTTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * *
541580 CTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTTAA
65 CTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAA
* * *
541645 ATAAGAAAAACAT--A-A---ATAC---T---CATTCTTTTCTAGATTAGGCACCATAAACTTAG
130 ATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAG
* * *
541698 TCTTCTAATAAGGATACATGATATTGATGCTTTGG-TTCTACAAGAAACACTTTCTTCCTC-CCA
195 TCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAACGCTTTCTTCC-CACCA
* * * * * * * *
541761 ATTTTTGTAAACTCTAAGTTCGTGTCTTAAATGAGACAAGCATTGATTGTAGTAAGGATCTTTAC
258 ATTTTTGTAAA-TTTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCAT
* * **
541826 TCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTC
322 TCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTC
* *
541891 TTTTGCAT-AGAAATCTTTTCTTCGCCTTATTTTCCCTAAAATCAAAGTTTGTACTTTAAATGCA
387 TTTTGCATGA-AAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATG-A
541955 -ACATGCATTGATTCTCGTAAAAGTC
450 GACATGCATTGATTCTCGTAAAAGTC
* * *
541980 TCCATTCTTTTCAAGATTGGGAACCCAAAACACATTTCCTTCATTAAGATA
1 TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA
542031 GTGTTCATTG
Statistics
Matches: 6129, Mismatches: 836, Indels: 358
0.84 0.11 0.05
Matches are distributed among these distances:
455 15 0.00
456 216 0.04
457 181 0.03
458 753 0.12
459 48 0.01
460 2 0.00
463 6 0.00
464 123 0.02
465 192 0.03
466 3 0.00
468 2 0.00
469 4 0.00
470 2 0.00
471 4 0.00
472 87 0.01
473 277 0.05
474 769 0.13
475 1403 0.23
476 1176 0.19
477 38 0.01
478 195 0.03
479 204 0.03
480 8 0.00
482 2 0.00
484 3 0.00
486 3 0.00
487 3 0.00
489 3 0.00
491 2 0.00
493 1 0.00
495 1 0.00
496 5 0.00
497 57 0.01
498 318 0.05
499 23 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
TCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGC
TTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAA
TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGT
CTTCTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATT
TTTGTAAATTTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCAT
TTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTT
GCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATG
CATTGATTCTCGTAAAAGTC
Found at i:536841 original size:22 final size:22
Alignment explanation
Indices: 536797--536837 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
536787 AAAAGTCTCT
536797 ATTCTTTCCAAGATTAGGGACC
1 ATTCTTTCCAAGATTAGGGACC
536819 ATTCTTTCCAAGATT-GGGA
1 ATTCTTTCCAAGATTAGGGA
536838 ACCAATGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (22 bp):
ATTCTTTCCAAGATTAGGGACC
Found at i:539556 original size:476 final size:475
Alignment explanation
Indices: 538779--542030 Score: 4007
Period size: 476 Copynumber: 6.9 Consensus size: 475
538769 CGCAAGATGC
* * * * * * *
538779 TATTCATACAATCAAAGTTTGCCTTTTAAAAAAGACAAACCTGAATACTCATACTAATCCCCATT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
* * *
538844 CTTTTTTGGATTAGGCACCATAAACATAGTCTTCTTATATGGATACA-GGATATTGATGATTTGG
66 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGG-TATTGATGCTTTGG
* * * *
538908 TTTCGCAAG-AACGTTTTTTTCCCA-TAATTTTTGTAAATTCTAAGTTCGTGCCTTAAATGAGAC
130 TTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGAC
* * * *
538971 TAACATGGATTCTAGTAACGATCTTCATTCACTTT-GTGATTAGGCACTATAAACATATTTTCCT
195 AAACATGGATTCTAGTAAGGATCTTCATTCA-TTTCGTGATTAGGCACTATAAACACATTCTCCT
* * *
539035 CATTAGGATAAATGATTTTGATGGTTTTCTTTTTCATGGAAATCTTTTCTTTGCCTTATTTTCCT
259 CATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCT
*
539100 TAAAATCAAACTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCATTTC
324 TAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTC-TTTC
* *
539165 AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATTCATGGCATTGATGCTTTGGTGTCGCA
388 AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* **
539230 AGAGAAGCTGTTCTCCCCACCGT
453 AGAGAAGCTTTTCTTTCCACCGT
* * * *
539253 TATTGATAGAAGCAAAGTTTGTCGCTTAAATAAGACAAACATGAATAGTCATACTAATCCACGTT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
* *
539318 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGGTATTGATGCTTTGTT
66 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGGTATTGATGCTTTGGT
* * * * * * *
539383 TTCGTAAGAAATGCTTTCTTCCCACCAATTTTTGAAAAGTGTAAGTTCATTCCTCAAATGAGACA
131 TTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACA
* * * * * * *
539448 AACAAGGATTCTAGTAAGGATCATCATTCATTTCATGACTAGGCACTTTGAACACATTCTCCCCA
196 AACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCA
* * * * * *
539513 ATAGGATAAATGATATTGATAGTTTTCTTTTGCCTGAAAATCTTTTCTTTGCCTCACTTTCTTTA
261 TTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTA
* * *
539578 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTTGTAAAAGTCTCCATTCTTTCCAT
326 AAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTT-CAA
* *
539643 GATTGGGAACTAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTGGCAAG
390 GATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* *
539708 AGAAGCTTTTCTTTCCAACAT
455 AGAAGCTTTTCTTTCCACCGT
* * * * **
539729 TATTGATAAAATCAAAGTTTCTCTCTGAAAAAAGACAAATGTGAATACTCATACTAATTCC-CAT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA-TCCACAT
* * * *
539793 TC-TTTCAGGACTAGGCACCATAAACATAGTCTTCTTATACGGATACA-GGATATTGATGATTTG
65 TCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGG-TATTGATGCTTTG
* * * * * *
539856 GTTTCGCTAGAAATGCCTTT-TTCCCA-TAATTTTTG-AAGATTCTATGTTCATGGCTCAAATGA
129 GTTTCGCAAGAAACG-CTTTCTTCCCACCAATTTTTGTAA-ATTCTAAGTTCGTGCCTCAAATGA
* *
539918 GACAAACATGGATTCTAGAAAGGATCTTCTTTCATTTCGTGATTAGGCACTATAAACACATTCTC
192 GACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTC
* **
539983 CTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTC
257 CTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTC
* * *
540048 CTTAAAATCAAAATTTGTACTTTAAATGAGACATGCATTGATTCTCGCAAAAGTCTCTATTCTTT
322 CTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTC-TT
* * *
540113 TTAAGATTGGGAACCAAAAACACATTCCCATCATTAGGATACATGACATTGATGCTTTGGTGTTG
386 TCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
540178 C-----AAG-----------A-CGT
451 CAAGAGAAGCTTTTCTTTCCACCGT
* * * * *
540186 TATTCATAAAATCAAAGTTTGTCTTTTAAATAAGACAAACTTGAATACTCATACTAATCCCCATT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
* * * * *
540251 CCTTTCTGGATTAGGCACCCTAAACATACTCTTCTTATACGGATACA-GGATATTGATGATTTGG
66 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGG-TATTGATGCTTTGG
* * *
540315 TTTCGCAAGAAACGCTTTTTTCCCA-TAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGTGAC
130 TTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGAC
* *
540379 ACACATGGATTCTAGTAAGGATCGTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTC
195 AAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTC
* * *
540444 ATTAGGATAAATGAAATTGATGGTTTTCTTCTGCAT-AGAAATCTTTTCTTTGCCTCATTTTCCT
260 ATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGA-AAATCTTTTCTTTGCCTTATTTTCCT
* * *
540508 TAAAATCAAAGTTTCTACTTTAATTGAGACATGCATTGATTCTCGTAAAAGTCTCAATTCTTTCT
324 TAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTC-
* * * * * * * * *
540573 AATATTGGGATCCAAGAACACATTCCCTTTATTACGATACATGACAATAATGCTTTGGTGCCACA
388 AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
** *
540638 AGAGAATATTTTCTTTCCACTGT
453 AGAGAAGCTTTTCTTTCCACCGT
* *
540661 TATTGATAGAATCAAAGTTTGTGTTTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
* * * * * *
540726 CTTGTCTGGATTAGGCACCGTAAACATAGGCTTCTAATAAGGATACATGATGTTGATGCTTTGGT
66 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGGTATTGATGCTTTGGT
* ** * *
540791 TTCGCCAGAAACGCTTTCTT-CCACCCAATTTTCCTAAATTCTAATTTCGCGCCTCAAATGAGAC
131 TTCGCAAGAAACGCTTTCTTCCCA-CCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGAC
* * * *
540855 AAACATGGATTTTAGTAAGGATTTTCATTCATTTCATGATTAGGCACTATAAA-ACATTCTCCAC
195 AAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTC
* * * * *
540919 ATTAGGATAAATGATACTGATGCTTTTTTTTTTTTTGCAAGAAAATCTTTTCTATGCCTTATTTT
260 ATTAGGATAAATGATATTGATG----GTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTT
* *
540984 CCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCATAAAAGTTTCCATTCTT
321 CCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTC-T
* * *
541049 TTCAAGATTGGGAACCAAAAACACATTCCTTTAATTAGGATACATGACATTGATGCTTTAGG-GC
385 TTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGTGT
* *
541113 CGCAAGAAAAGGTTTTC-TTCCTACCGT
449 CGCAAGAGAAGCTTTTCTTTCC-ACCGT
* ** * * *
541140 TACTGATAGAATCGCAG-TTGTCTCTTAAATAAGACAAACTTGAATACTCACACTAATCCCCATT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
* * * * *
541204 CTTTTCAGGATTAGGCACCATAAACATAATCTTCTCATCAGGATACATGATATTGATGCTTTGGT
66 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGGTATTGATGCTTTGGT
* * * * * * * * * * * *
541269 TTCACAAGATATGCTTTCATCCCGCCTATTTTTGCAAAGTATAAGTTCATTCCTCAAATTAGACA
131 TTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACA
* *
541334 AACATGGATTCTAGTAAGGATCTTCGTTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA
196 AACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCA
* **
541399 TTAGGATAAATGATATTGATGGTTTTTTTTTTGCATGAAAATCTTCTT-TTTGCCTCGTTTTCCT
261 TTAGGATAAATGATATTGATGG-TTTTCTTTTGCATGAAAATCTT-TTCTTTGCCTTATTTTCCT
* *
541463 TAAAATCAAAGTTTGTACTTTAATTGAGACATGCATTGATTCTCATAAAAGTCTCCATTCTTTCT
324 TAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTC-
* * * *
541528 AATATTGGGAACCAAGAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTCACA
388 AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* *
541593 AGAAAAGCTTTTCTTTCCACCAT
453 AGAGAAGCTTTTCTTTCCACCGT
*
541616 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACAT--A-A---ATAC---T---CATT
1 TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
* * * *
541669 CTTTTCTAGATTAGGCACCATAAACTTAGTCTTCTAATAAGGATACATGATATTGATGCTTTGG-
66 CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGGTATTGATGCTTTGGT
* * * * *
541733 TTCTACAAGAAACACTTTCTTCCTC-CCAATTTTTGTAAACTCTAAGTTCGTGTCTTAAATGAGA
131 TTC-GCAAGAAACGCTTTCTTCC-CACCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGA
* * * * * *
541797 CAAGCATTGATTGTAGTAAGGATCTTTACTCATTTCATGATTAGGCACTATAAACACATTCTCCT
194 CAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCT
* ** *
541862 CATCAGGATGCATGATATTGATGGTTTTCTTTTGCAT-AGAAATCTTTTCTTCGCCTTATTTTCC
259 CATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGA-AAATCTTTTCTTTGCCTTATTTTCC
*
541926 CTAAAATCAAAGTTTGTACTTTAAATGCA-ACATGCATTGATTCTCGTAAAAGTCTCCATTCTTT
323 TTAAAATCAAAGTTTGTACTTTAAATG-AGACATGCATTGATTCTCGTAAAAGTCTCCATTC-TT
* * *
541990 TCAAGATTGGGAACCCAAAACACATTTCCTTCATTAAGATA
386 TCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATA
542031 GTGTTCATTG
Statistics
Matches: 2402, Mismatches: 318, Indels: 126
0.84 0.11 0.04
Matches are distributed among these distances:
456 3 0.00
457 65 0.03
458 334 0.14
459 2 0.00
463 5 0.00
464 123 0.05
465 190 0.08
466 1 0.00
468 1 0.00
469 3 0.00
471 3 0.00
473 2 0.00
474 381 0.16
475 264 0.11
476 589 0.25
477 31 0.01
478 195 0.08
479 203 0.08
480 7 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
TATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATT
CTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGGTATTGATGCTTTGGT
TTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACA
AACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCA
TTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTA
AAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCAAG
ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
GAAGCTTTTCTTTCCACCGT
Found at i:539717 original size:159 final size:156
Alignment explanation
Indices: 539073--540182 Score: 408
Period size: 159 Copynumber: 7.0 Consensus size: 156
539063 CTTTTTCATG
* * * * *
539073 GAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAACTTTGTACTTTAAATGAGACATGCATTG
1 GAAAGCTTTTCTTTGCC-TACTTTCTTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTG
* *
539138 ATTCTCGTAAAAGTCTCCATTCATTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGAT
65 ATTCTCGTAAAAGTCTCCATTC-TTTCATGATTAGGAACCAAAAACACATTCCCTTCATTAGGAT
* * *
539203 TCATGGCATTGATGCTTTGGTGTCGCAA
129 ACATGACATTGATGCTTTGGTGTTGCAA
* * * * * * * * * *
539231 GAGAAGCTGTTC--TCCCCACCGTTATTGATAGAAGCAAAGTTTGT-CGCTTAAATAAGACAAAC
1 GA-AAGCTTTTCTTTGCCTA-CTTTCTT--TAAAATCAAAGTTTGTAC-TTTAAATGAGACAAGC
** * * * * * * * *
539293 A-TGAATAGTCATACTAA-TC-CACGTTCTTTTC-TGGATTAGGCACCATAAACATAGT-CTTCT
61 ATTG-ATTCTCGTA-AAAGTCTC-CATTC-TTTCAT-GATTAGGAACCAAAAACACATTCCCT-T
* ** * *
539353 CATAAGGATACATGGTATTGATGCTTT-GTTTTCGTAA
120 CATTAGGATACATGACATTGATGCTTTGGTGTT-GCAA
** * * * ** ** * * * * *
539390 GAAATGC-TTTCTTCCCACCAATTT-TTGAAAAGTGTAAGTTCATTCCTCAAATGAGACAAACAA
1 GAAA-GCTTTTCTTTGC-CTACTTTCTTTAAAA-TCAAAGTTTGTACTTTAAATGAGACAAGCAT
* * * * * **** * *
539453 GGATTCTAGT-AAGGATCAT-CATTCATTTCATGACTAGGCACTTTGAACACATTCTCC-CCAAT
63 TGATTCTCGTAAAAG-TC-TCCATTC-TTTCATGATTAGGAACCAAAAACACATTC-CCTTCATT
* * ** * **
539515 AGGATAAATGATATTGATAG-TTTTCTTTTGCCT
124 AGGATACATGACATTGAT-GCTTTGGTGTTGCAA
*
539548 GAAAATCTTTTCTTTGCCTCACTTTCTTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATT
1 G-AAAGCTTTTCTTTGCCT-ACTTTCTTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATT
* * *
539613 GATTCTTGTAAAAGTCTCCATTCTTTCCATGATTGGGAACTAAAAACACATTCCCTTCATTAGGA
64 GATTCTCGTAAAAGTCTCCATTCTTT-CATGATTAGGAACCAAAAACACATTCCCTTCATTAGGA
*
539678 TACATGACATTGATGCTTTGGTGTGGCAA
128 TACATGACATTGATGCTTTGGTGTTGCAA
* * * * * **
539707 GAGAAGCTTTTCTTT-CCAACATTATTGATAAAATCAAAGTTTCT-CTCTGAAAAAAGACAA--A
1 GA-AAGCTTTTCTTTGCCTACTTTCTT--TAAAATCAAAGTTTGTACT-TTAAATGAGACAAGCA
* * * * * * * * * * *
539768 TGTGAATACTCATACTAATTC-CCATTCTTTCAGGACTAGGCACCATAAACATAGT--CTTCTTA
62 T-TG-ATTCTCGTA-AAAGTCTCCATTCTTTCATGATTAGGAACCAAAAACACATTCCCTTCAT-
* * * *
539830 TACGGATACAGGATATTGATGATTTGGT-TTCGCTA
123 TA-GGATACATGACATTGATGCTTTGGTGTT-GCAA
* * * * * * * * * *
539865 GAAATGC-CTT-TTTCCCATAATTT-TTGAAGATTCTATGTTCATG-GC-TCAAATGAGACAAAC
1 GAAA-GCTTTTCTTTGCC-TACTTTCTTTAA-AATCAAAGTT--TGTACTTTAAATGAGACAAGC
* * * * * * * * *
539925 ATGGATTCTAG-AAAGGATCTTCTTTCATTTCGTGATTAGGCACTATAAACACATTCTCC-TCAT
61 ATTGATTCTCGTAAAAG-TCTCCATTC-TTTCATGATTAGGAACCAAAAACACATTC-CCTTCAT
* * * * ** * *
539988 CAGGATGCATGATATTGATGGTTTTCTTTTGCAT
123 TAGGATACATGACATTGATGCTTTGGTGTTGCAA
* * * * *
540022 GAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTTGTACTTTAAATGAGACATGCATT
1 G-AAAGCTTTTCTTTGCC-TACTTTCTTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATT
* * * * * *
540087 GATTCTCGCAAAAGTCTCTATTCTTTTTAAGATTGGGAACCAAAAACACATTCCCATCATTAGGA
64 GATTCTCGTAAAAGTCTCCATTC-TTTCATGATTAGGAACCAAAAACACATTCCCTTCATTAGGA
540152 TACATGACATTGATGCTTTGGTGTTGCAA
128 TACATGACATTGATGCTTTGGTGTTGCAA
540181 GA
1 GA
540183 CGTTATTCAT
Statistics
Matches: 676, Mismatches: 206, Indels: 140
0.66 0.20 0.14
Matches are distributed among these distances:
154 1 0.00
155 5 0.01
156 35 0.05
157 77 0.11
158 171 0.25
159 356 0.53
160 28 0.04
161 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (156 bp):
GAAAGCTTTTCTTTGCCTACTTTCTTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
TTCTCGTAAAAGTCTCCATTCTTTCATGATTAGGAACCAAAAACACATTCCCTTCATTAGGATAC
ATGACATTGATGCTTTGGTGTTGCAA
Found at i:542269 original size:255 final size:255
Alignment explanation
Indices: 541805--542285 Score: 727
Period size: 255 Copynumber: 1.9 Consensus size: 255
541795 GACAAGCATT
* *
541805 GATTGTAGTAAGGATCTTTACTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGA
1 GATTCTAGTAAGGATCCTTACTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGA
** * *
541870 TGCATGATATTGATGGTTTTCTTTTGCATAGAAATCTTTTCTTCGCCTTATTTTCCCTAAAATCA
66 TAAATGATATTGATGGTTTTCTTTTGCATAGAAATCTTTTCTTCGACTTATTTTCCCTAAAATAA
* *
541935 AAGTTTGTACTTTAAATGCAACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGG
131 AAGTGTGTACTTTAAATGCAACATGCATTGATTCTCATAAAAGTCTCCATTCTTTTCAAGATTGG
542000 GAACCCAAAACACATTTCCTTC-ATTAAGATAGTGTTCATTGCTCAAATGCGGCAAACATG
196 GAACCCAAAACACA-TTCCTTCTATTAAGATAGTGTTCATTGCTCAAATGCGGCAAACATG
* ** * *
542060 GATTCTAGTAAGGATCCTTATTCATTTTGTGATTAGGCACTATAAACACATTCTCTTCATTAGGA
1 GATTCTAGTAAGGATCCTTACTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGA
* * * *
542125 TAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGACTTGTTTTCCTTAAAATAA
66 TAAATGATATTGATGGTTTTCTTTTGCATAGAAATCTTTTCTTCGACTTATTTTCCCTAAAATAA
*
542190 AAGTGTGTACTTTAAATG-AGACATGCATTGATTCTCATAAAAGTCTCCATTC-TTTCTAATATT
131 AAGTGTGTACTTTAAATGCA-ACATGCATTGATTCTCATAAAAGTCTCCATTCTTTTC-AAGATT
*
542253 GGGAA-CCAAGAACACATTCCTTCTATTAGGATA
194 GGGAACCCAA-AACACATTCCTTCTATTAAGATA
542286 CATGACATTG
Statistics
Matches: 203, Mismatches: 19, Indels: 8
0.88 0.08 0.03
Matches are distributed among these distances:
254 16 0.08
255 187 0.92
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (255 bp):
GATTCTAGTAAGGATCCTTACTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGA
TAAATGATATTGATGGTTTTCTTTTGCATAGAAATCTTTTCTTCGACTTATTTTCCCTAAAATAA
AAGTGTGTACTTTAAATGCAACATGCATTGATTCTCATAAAAGTCTCCATTCTTTTCAAGATTGG
GAACCCAAAACACATTCCTTCTATTAAGATAGTGTTCATTGCTCAAATGCGGCAAACATG
Found at i:542703 original size:731 final size:720
Alignment explanation
Indices: 541313--542758 Score: 2266
Period size: 731 Copynumber: 2.0 Consensus size: 720
541303 CAAAGTATAA
* *
541313 GTTCATTCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCGTTCATTTTGTGATTAGGC
1 GTTCATTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGC
*
541378 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTTTTTTTGCATGAAAATCT
66 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTTCTTTTGCATGAAAATCT
* * * *
541443 TCTTTTTGCCTCGTTTTCCTTAAAATCAAAGTTTGTACTTTAATTGAGACATGCATTGATTCTCA
131 TCTTTTTGACTCGTTTTCCTTAAAATAAAAGTGTGTACTTTAAATGAGACATGCATTGATTCTCA
541508 TAAAAGTCTCCATTCTTTCTAATATTGGGAACCAAGAACACATTCCCTTTATTAGGATACATGAC
196 TAAAAGTCTCCATTCTTTCTAATATTGGGAACCAAGAACACATTCCCTTTATTAGGATACATGAC
541573 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGT
261 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGT
*
541638 CTCTTAAATAAGAAAAACATAAATACTCATTCTTTTCTAGATTAGGCACCATAAACTTAGTCTTC
326 CTCTTAAATAAGAAAAACATAAATACTCATTCTTTTCTAGATTAGGCACCATAAACTGAGTCTTC
541703 TAATAAGGATACATGATATTGATGCTTTGGTTCTACAAGAAACACTTTCTTCCTCCCAATTTTTG
391 TAATAAGGATACATGATATTGATGCTTTGGTTCTACAAGAAACACTTTCTTCCTCCCAATTTTTG
* * * * *
541768 TAAACTCTAAGTTCGTGTCTTAAATGAGACAAGCATTGATTGTAGTAAGGATCTTTACTCATTTC
456 TAAACTCTAAGTTCGTGCCTCAAACGAGACAAGCATTGATTCTAGTAAGGATCTTCACTCATTTC
**
541833 ATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCA
521 ATGATTAGGCACTATAAACACATTCTCCTCATCAGGATAAATGATATTGATGGTTTTCTTTTGCA
* *
541898 TAGAAATCTTTTCTTCGCCTTATTTTCCCTAAAATCAAAGTTTGTACTTTAAATGCAACATGCAT
586 TAGAAATCTTTTCTTCACCTTATTTTCCCTAAAATCAAAGTTTATACTTTAAATGCAACATGCAT
* *
541963 TGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCCAAAACACATTTCCTTCATTAAG
651 TGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAAG
542028 ATAGT
716 ATAGT
* * *
542033 GTTCATTGCTCAAATGCGGCAAACATGGATTCTAGTAAGGATCCTT-ATTCATTTTGTGATTAGG
1 GTTCATTCCTCAAATGAGACAAACATGGATTCTAGTAAGGAT-CTTCATTCATTTTGTGATTAGG
* *
542097 CACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGG-TTTTCTTTTGCATGGAAATC
65 CACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTTCTTTTGCATGAAAATC
*
542161 TT-TTCTTTGACTTGTTTTCCTTAAAATAAAAGTGTGTACTTTAAATGAGACATGCATTGATTCT
130 TTCTT-TTTGACTCGTTTTCCTTAAAATAAAAGTGTGTACTTTAAATGAGACATGCATTGATTCT
542225 CATAAAAGTCTCCATTCTTTCTAATATTGGGAACCAAGAACACATT-CCTTCTATTAGGATACAT
194 CATAAAAGTCTCCATTCTTTCTAATATTGGGAACCAAGAACACATTCCCTT-TATTAGGATACAT
*
542289 GACATTGATGCTTTGGTGTCACACA-AGAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGT
258 GACATTGATGCTTTGGTGTCACA-AGAAAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGT
* *
542353 TTGTCTCTTAAATAAGAAAAATATGAATACTCATACTAATCCACATTCTTTTCTGGATTAGGCAC
322 TTGTCTCTTAAATAAGAAAAACAT--A-A---ATAC---T---CATTCTTTTCTAGATTAGGCAC
*
542418 CATAAA-TAGAGTCTTCTAATAAGGATACATGATATTGATGCTTTGGTT-TCGCAAGAAACACTT
375 CATAAACT-GAGTCTTCTAATAAGGATACATGATATTGATGCTTTGGTTCT-ACAAGAAACACTT
* * *
542481 TTTTCC-CACCAATTTTTGTAAATTCTAAGTTCGTGCCTCAAACGAGACAAGCA-TGAATTCTTG
438 TCTTCCTC-CCAATTTTTGTAAACTCTAAGTTCGTGCCTCAAACGAGACAAGCATTG-ATTCTAG
* * *
542544 TAAGGATCTTCATTCATTTCATGATTCA-GCACTATAAACACATTCTCCTTATTAGGATAAATGA
501 TAAGGATCTTCACTCATTTCATGATT-AGGCACTATAAACACATTCTCCTCATCAGGATAAATGA
* * *
542608 TATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAAAATCAAAGTTTA
565 TATTGATGGTTTTCTTTTGCATAGAAATCTTTTCTTCACCTTATTTTCCCTAAAATCAAAGTTTA
*
542673 TGCTTTAAATG-AGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCA
630 TACTTTAAATGCA-ACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCA
542737 AAAACACATTCCCTTCATTAAG
694 AAAACACATTCCCTTCATTAAG
542759 GTACATGACA
Statistics
Matches: 665, Mismatches: 39, Indels: 33
0.90 0.05 0.04
Matches are distributed among these distances:
718 6 0.01
719 217 0.33
720 99 0.15
721 4 0.01
722 1 0.00
725 4 0.01
728 1 0.00
730 6 0.01
731 326 0.49
732 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (720 bp):
GTTCATTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGC
ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTTCTTTTGCATGAAAATCT
TCTTTTTGACTCGTTTTCCTTAAAATAAAAGTGTGTACTTTAAATGAGACATGCATTGATTCTCA
TAAAAGTCTCCATTCTTTCTAATATTGGGAACCAAGAACACATTCCCTTTATTAGGATACATGAC
ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGT
CTCTTAAATAAGAAAAACATAAATACTCATTCTTTTCTAGATTAGGCACCATAAACTGAGTCTTC
TAATAAGGATACATGATATTGATGCTTTGGTTCTACAAGAAACACTTTCTTCCTCCCAATTTTTG
TAAACTCTAAGTTCGTGCCTCAAACGAGACAAGCATTGATTCTAGTAAGGATCTTCACTCATTTC
ATGATTAGGCACTATAAACACATTCTCCTCATCAGGATAAATGATATTGATGGTTTTCTTTTGCA
TAGAAATCTTTTCTTCACCTTATTTTCCCTAAAATCAAAGTTTATACTTTAAATGCAACATGCAT
TGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAAG
ATAGT
Found at i:542742 original size:159 final size:158
Alignment explanation
Indices: 542103--542779 Score: 400
Period size: 159 Copynumber: 4.3 Consensus size: 158
542093 TAGGCACTAT
* * *
542103 AAACACATTCT-CTTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
1 AAACACATTCTCCTT-ATTAGGATAAATGATATTGATGCTTTGCTTTCGCA-GGAAATCTTTTCT
* * * * * *
542167 TTGACTTGTTTTCCTTAAAATAAAAGTGTGTACTTTAAATGAGACATGCATTG-ATTCTCATAAA
64 TTCACCTATTTT-CTTAAAATCAAAGTTTGTGCTTTAAATGAGACATGCATTGAATTCTCATAAA
*
542231 AGTCTCCATTC-TTTCTAATATTGGGAACCAA
128 AGTCTCCATTCTTTTC-AAGATTGGGAACCAA
* * * * * * * ** *
542262 GAACACATTC-CTTCTATTAGGATACATGACATTGATGCTTTGGTGTCACACAAGAAGCTTTTCT
1 AAACACATTCTCCT-TATTAGGATAAATGATATTGATGCTTTGCTTTCGCAGGA-AATCTTTTCT
** * * ** *
542326 TTCCACC-ATTATTGATAGAATCAAAGTTTGT-CTCTTAAATAAGA-A-AAATATGAATACTCAT
64 TT-CACCTATT-TTCTTAAAATCAAAGTTTGTGCT-TTAAATGAGACATGCAT-TGAATTCTCAT
* ** * * *
542387 ACTAA-TC-CACATTCTTTTCTGGATTAGGCACCAT
125 A-AAAGTCTC-CATTCTTTTCAAGATTGGGAACCAA
* * * * * * * * * *
542421 AAATAGAGTCTTCTAATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTT-TT
1 AAACACATTCTCCTTATTAGGATAAATGATATTGATGCTTTGCTTTCGCAGGAAA-TCTTTTCTT
* * * * * * * * * **
542485 CCCACCAATTTT-TGTAAATTCTAAGTTCGTGCCTCAAACGAGACAAGCA-TGAATTCTTGT-AA
65 -TCACCTATTTTCT-TAAAATCAAAGTTTGTGCTTTAAATGAGACATGCATTGAATTCTCATAAA
* * * * ** * * *
542547 GGATCTTCATTCATTTCATGATTCAGCACTAT
128 AG-TCTCCATTCTTTTCAAGATTGGGAACCAA
* * *
542579 AAACACATTCTCCTTATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTT
1 AAACACATTCTCCTTATTAGGATAAATGATATTGATGCTTTGCTTTCGCA-GGAAATCTTTTCTT
* *
542644 T-ACCTTATTTTCCTTAAAATCAAAGTTTATGCTTTAAATGAGACATGCATTG-ATTCTCGTAAA
65 TCACC-TATTTT-CTTAAAATCAAAGTTTGTGCTTTAAATGAGACATGCATTGAATTCTCATAAA
542707 AGTCTCCATTCTTTTCAAGATTGGGAACCAA
128 AGTCTCCATTCTTTTCAAGATTGGGAACCAA
* * *
542738 AAACACATTC-CCTTCATTAAGG-TACATGACATTGGTGCTTTG
1 AAACACATTCTCCTT-ATT-AGGATAAATGATATTGATGCTTTG
542780 GTGTCACAAG
Statistics
Matches: 379, Mismatches: 108, Indels: 62
0.69 0.20 0.11
Matches are distributed among these distances:
156 1 0.00
157 5 0.01
158 118 0.31
159 233 0.61
160 22 0.06
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (158 bp):
AAACACATTCTCCTTATTAGGATAAATGATATTGATGCTTTGCTTTCGCAGGAAATCTTTTCTTT
CACCTATTTTCTTAAAATCAAAGTTTGTGCTTTAAATGAGACATGCATTGAATTCTCATAAAAGT
CTCCATTCTTTTCAAGATTGGGAACCAA
Found at i:550962 original size:30 final size:30
Alignment explanation
Indices: 550813--551304 Score: 401
Period size: 30 Copynumber: 16.0 Consensus size: 30
550803 GCTTCAAATC
* * *
550813 TCTCTTTTCCAAGTACACGACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* * * *
550843 TCCTTTTCTTCCAAGTCCATGACTCAGTAGCA
1 T-CTCTT-TTCAAAGTCCACGACTCAGTGGCA
* *
550875 TCTCTTTTCTTCAATGTCCATGACTCAGTGGCAA
1 TCTC--TT-TTCAAAGTCCACGACTCAGTGGC-A
* * * *
550909 TCTCTTCTCAAAGTCTACAACTCAGTGGTA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* *
550939 TCTTTTTTCTAAGTCCACGACTCAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* * * *
550969 TCTTTTCTTCAACA-TCAATGACTTAGTGGCAA
1 TCTCTT-TTCAA-AGTCCACGACTCAGTGGC-A
* *
551001 TCTCTTCTCAAAGTCCACAACTCAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* * *
551031 TCTCTTGTCAAAGTCCACAACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* *
551061 TCTCTTTTCTAAGTCCACGACTCAATGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* ** *
551091 TCCTTTTCTTCCTAGTCCACGACTCAGTTGCA
1 T-CTCTT-TTCAAAGTCCACGACTCAGTGGCA
* * * *
551123 TCTTTTCTTCAAAATCCACGACTTAGTGGTA
1 TCTCTT-TTCAAAGTCCACGACTCAGTGGCA
* * *
551154 TCTCTTCTCAAAGTCCATGACTCAGTGGCG
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* ** * *
551184 TTTCTTCCCAAAGCCCATGACTCAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
* *
551214 TCTTTTCTTCAAAGTCCACGACTTAGTGGCA
1 TCTCTT-TTCAAAGTCCACGACTCAGTGGCA
* * *
551245 TCTCTTCTCAAAGTTCATGACTCAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
** * *
551275 TCTCTTCCCAAAGTCCAAGACTCCGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCA
551305 CCTTGTTCCT
Statistics
Matches: 374, Mismatches: 76, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
30 182 0.49
31 113 0.30
32 51 0.14
33 23 0.06
34 5 0.01
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (30 bp):
TCTCTTTTCAAAGTCCACGACTCAGTGGCA
Found at i:550997 original size:61 final size:61
Alignment explanation
Indices: 550813--551304 Score: 436
Period size: 61 Copynumber: 8.0 Consensus size: 61
550803 GCTTCAAATC
* * * * * *
550813 TCTCTTTTCCAAGTACACGACTTAGTGGCATCCTTTTCTTCCAAGTCCATGACTCAGTAGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCAT-CTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * * * * *
550875 TCTCTTTTCTTCAATGTCCATGACTCAGTGGCAATCTCTTC-TCAAAGTCTACAACTCAGTGGTA
1 TCTC--TT-TTCAAAGTCCACGACTCAGTGGC-ATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * * * *
550939 TCTTTTTTCTAAGTCCACGACTCAGTGGCATCTTTTCTTCAACA-TCAATGACTTAGTGGCAA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAA-AGTCCACGACTCAGTGGC-A
* * * * * *
551001 TCTCTTCTCAAAGTCCACAACTCAGTGGCATCTCTT-GTCAAAGTCCACAACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * ** *
551061 TCTCTTTTCTAAGTCCACGACTCAATGGCATCCTTTTCTTCCTAGTCCACGACTCAGTTGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCAT-CTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * * * * * *
551123 TCTTTTCTTCAAAATCCACGACTTAGTGGTATCTCTTC-TCAAAGTCCATGACTCAGTGGCG
1 TCTCTT-TTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* ** * * *
551184 TTTCTTCCCAAAGCCCATGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
* * * * * * *
551245 TCTCTTCTCAAAGTTCATGACTCAGTGGCATCTCTTC-CCAAAGTCCAAGACTCCGTGGCA
1 TCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
551305 CCTTGTTCCT
Statistics
Matches: 342, Mismatches: 76, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
60 78 0.23
61 130 0.38
62 67 0.20
63 20 0.06
64 22 0.06
65 23 0.07
66 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (61 bp):
TCTCTTTTCAAAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAGTGGCA
Found at i:551234 original size:91 final size:91
Alignment explanation
Indices: 550823--551304 Score: 504
Period size: 91 Copynumber: 5.2 Consensus size: 91
550813 TCTCTTTTCC
* * * * * *
550823 AAGTACACGACTTAGTGGCATCCTTTTCTTCCAAGTCCATGACTCAGTAGCATCTCTTTTCTTCA
1 AAGTCCACGACTCAGTGGCAT-CTTTTCTTCAAAGTCCACGACTTAGTGGCATCTC--TTC-TCA
* *
550888 ATGTCCATGACTCAGTGGCAATCTCTTCTCA
62 AAGTCCATGACTCAGTGGC-ATCTCTTCCCA
* * * * * *
550919 AAGTCTACAACTCAGTGGTATCTTTT-TTCTAAGTCCACGACTCAGTGGCATCTTTTCTTCAACA
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTC-TCAA-A
* * *
550983 -TCAATGACTTAGTGGCAATCTCTTCTCA
64 GTCCATGACTCAGTGGC-ATCTCTTCCCA
* * * * * *
551011 AAGTCCACAACTCAGTGGCATCTCTT-GTCAAAGTCCACAACTTAGTGGCATCTCTTTTCTAAGT
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTCTCAAAGT
* * *
551075 CCACGACTCAATGGCATCCTTTTCTTCC-
66 CCATGACTCAGTGGCAT-CTCTTC--CCA
* * * *
551103 TAGTCCACGACTCAGTTGCATCTTTTCTTCAAAATCCACGACTTAGTGGTATCTCTTCTCAAAGT
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTCTCAAAGT
* *
551168 CCATGACTCAGTGGCGTTTCTTCCCA
66 CCATGACTCAGTGGCATCTCTTCCCA
* *
551194 AAGCCCATGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTCTCAAAGT
1 AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTCTCAAAGT
*
551259 TCATGACTCAGTGGCATCTCTTCCCA
66 CCATGACTCAGTGGCATCTCTTCCCA
* *
551285 AAGTCCAAGACTCCGTGGCA
1 AAGTCCACGACTCAGTGGCA
551305 CCTTGTTCCT
Statistics
Matches: 324, Mismatches: 55, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
90 5 0.02
91 119 0.37
92 108 0.33
93 47 0.15
94 24 0.07
95 5 0.02
96 16 0.05
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (91 bp):
AAGTCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTTAGTGGCATCTCTTCTCAAAGT
CCATGACTCAGTGGCATCTCTTCCCA
Found at i:551365 original size:34 final size:33
Alignment explanation
Indices: 551285--552301 Score: 875
Period size: 34 Copynumber: 30.8 Consensus size: 33
551275 TCTCTTCCCA
*
551285 AAGTCCA-AGACTCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACA-ACTCCGTGGCACCTTTTTCCTTTT
** *
551318 AAGTCCACAACTCCGTGGCAGTTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
551351 AAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
551386 AAGTCCACAACTCCGTGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* ** **
551413 AAGTCCATAACTTTGTGGCACCTTTCTCTTTTTTTT
1 AAGTCCACAACTCCGTGGCACC-TT-T-TTCCTTTT
* *
551449 AAAGCCCACAACTCCGTGGTACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
551484 AAGTCCACAACTCCGTGGCACCTTCTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* **
551517 AAGTCCACAACTCTGTGGCACCTTTCTCTTTTTCTT
1 AAGTCCACAACTCCGTGGCACCTTT-T-TCCTT-TT
* * * *
551553 AAAGCCCACAACTTCATGGTACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* * *
551588 AAGTCCACAACTCCATGGCACCTTCTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
551621 AAGTCCACAATTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
551654 AAAG-CCTGCAACTCTGTGGCACTCTTTTTCCTTTT
1 -AAGTCC-ACAACTCCGTGGCAC-CTTTTTCCTTTT
* *
551689 AAGTCCATAACTCCGTTGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
551716 AAGTCCACAACTCTGTGGCACCTTTTTCTTTTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTC---CTTTT
* * * **
551752 AAAGCCCAAAACACTATGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* *
551787 AAGTCCATAACTCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
551820 AAGTACACAATTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
551853 AAAGCCCATAACTCTGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
551888 AAGTCCACAACTCTGTGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
** *
551915 AAGTCCACAACTCTATGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
551948 AAAGCCCACAACTTCGTGACACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* * *
551983 AAGTCCACAACTCCATGGCACCTTGTTCATTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
552016 AAGTCCACAATTCTGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
552049 AAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
552084 AAGTCCACAACTCCATGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
552111 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
552144 AAGTCCATAACTCCGTGGCACC-TTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * * *
552176 AAGTCTACAACTTCGTGGCACCCTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
552209 AAGTCTACAACTTCGTGGCACCCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTTCCTTTT
** * * * *
552243 AAACCCACACCTCCATGGCATCCCCTTTTCC-TAT
1 AAGTCCACAACTCCGTGGCA--CCTTTTTCCTTTT
*
552277 AAGTCCACAACTCTGTGGCACCTTT
1 AAGTCCACAACTCCGTGGCACCTTT
552302 AAGCCCAATA
Statistics
Matches: 800, Mismatches: 129, Indels: 111
0.77 0.12 0.11
Matches are distributed among these distances:
27 96 0.12
28 4 0.00
32 33 0.04
33 243 0.30
34 266 0.33
35 80 0.10
36 14 0.02
37 52 0.06
38 12 0.01
ACGTcount: A:0.20, C:0.30, G:0.12, T:0.38
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:551418 original size:27 final size:27
Alignment explanation
Indices: 551380--551434 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
551370 CACTTTTTTT
551380 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* **
551407 CCTTTTAAGTCCATAACTTTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
551434 C
1 C
551435 TTTCTCTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.31
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:551713 original size:27 final size:27
Alignment explanation
Indices: 551683--551742 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
551673 CACTCTTTTT
* *
551683 CCTTTTAAGTCCATAACTCCGTTGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
551710 CCTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
551737 CTTTTT
1 CCTTTT
551743 CTTTTTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.37
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:551758 original size:199 final size:198
Alignment explanation
Indices: 551312--552298 Score: 1204
Period size: 199 Copynumber: 5.0 Consensus size: 198
551302 GCACCTTGTT
* * * *
551312 CCTTTTAAGTCCACAACTCCGTGGCA-GTTTTT-TCTTTTTAAAGCCCACAACTCCGTGGCACTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCTTTTTTTAAAGCCCACAACTCCGTGGCACTC
* *
551375 TTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C--C--C-TTTTAAGTCCATAACTT-TGTGGCA
66 TTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTCTTTTTAAGTCCACAA-TTCCGTGGCA
* *
551433 CCTTTCTCTTTTTTTTAAAGCCCACAACTCCGTGGTACTCTTTTTCCTTTTAAGTCCACAACTCC
130 CC-TT-T-TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCC
551498 GTGGCACCTTC
192 GTGGCA----C
* * * *
551509 TTCCTTTTAAGTCCACAACTCTGTGGCACCTTTCTCTTTTTCTTAAAGCCCACAACTTCATGGTA
1 --CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCTTTTT-TTAAAGCCCACAACTCCGTGGCA
*
551574 CTCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTCTTCTTTTTAAGTCCACAATTCCGTGG
63 CTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTCTTTTTAAGTCCACAATTCCGTGG
** * *
551639 CACCTTTTTCTTTTTAAAGCCTGCAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCATAACTCCG
128 CACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCG
*
551704 TTGCAC
193 TGGCAC
* * **
551710 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCTTTTTTTTAAAGCCCAAAACACTATGGCACT
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTC-TTTTTTTAAAGCCCACAACTCCGTGGCACT
* * * *
551775 CTTTTTCCTTTTAAGTCCATAACTCCGTGGCACCTTGTTCCTTTTAAGTACACAATTCCGTGGCA
65 CTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTCTTTTTAAGTCCACAATTCCGTGGCA
* * *
551840 CCTTTTTCTTTTTAAAGCCCATAACTCTGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCTGTG
130 CCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTG
551905 GCAC
195 GCAC
* * *
551909 CCTTTTAAGTCCACAACTCTATGGCACCTTTTTC--TTTTTAAAGCCCACAACTTCGTGACACTC
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCTTTTTTTAAAGCCCACAACTCCGTGGCACTC
* * * *
551972 TTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCATTTTAAGTCCACAATTCTGTGGCAC
66 TTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTCTTTTTAAGTCCACAATTCCGTGGCAC
* *
552037 CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTCCTTTTAAGTCCACAACTCCATGG
131 CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGG
552102 CAC
196 CAC
* * * * *
552105 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTTC--CTTTT-AAGTCCATAACTCCGTGGCAC-C
1 CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCTTTTTTTAAAGCCCACAACTCCGTGGCACTC
* * * *
552166 -TTTTCTTTTTAAGTCTACAACTTCGTGGCACCCTT-TTCTTTTTAAGTCTACAACTT-CGTGGC
66 TTTTTCCTTTTAAGTCCACAACTCCGTGGCA-CCTTCTTCTTTTTAAGTCCACAA-TTCCGTGGC
* * * * * * *
552228 ACCCTTTTTCCTTTTAAA-CCCACACCTCCATGGCATCCCCTTTTCC-TATAAGTCCACAACTCT
129 A-CCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCA-CTCTTTTTCCTTTTAAGTCCACAACTCC
552291 GTGGCAC
192 GTGGCAC
552298 C
1 C
552299 TTTAAGCCCA
Statistics
Matches: 697, Mismatches: 76, Indels: 36
0.86 0.09 0.04
Matches are distributed among these distances:
193 85 0.12
194 29 0.04
195 17 0.02
196 181 0.26
199 234 0.34
200 9 0.01
201 5 0.01
202 52 0.07
203 1 0.00
205 57 0.08
206 1 0.00
207 5 0.01
208 21 0.03
ACGTcount: A:0.20, C:0.30, G:0.12, T:0.38
Consensus pattern (198 bp):
CCTTTTAAGTCCACAACTCTGTGGCACCTTTTTCTTTTTTTAAAGCCCACAACTCCGTGGCACTC
TTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTCTTTTTAAGTCCACAATTCCGTGGCAC
CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGG
CAC
Found at i:551913 original size:27 final size:27
Alignment explanation
Indices: 551882--551941 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
551872 CACTCTTTTT
*
551882 CCTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGTCCACAACTCTATGGCAC
551909 CCTTTTAAGTCCACAACTCTATGGCAC
1 CCTTTTAAGTCCACAACTCTATGGCAC
*
551936 CTTTTT
1 CCTTTT
551942 CTTTTTAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.35
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCTATGGCAC
Found at i:552116 original size:27 final size:27
Alignment explanation
Indices: 552078--552132 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
552068 CACTTTTTTT
552078 CCTTTTAAGTCCACAACTCCATGGCAC
1 CCTTTTAAGTCCACAACTCCATGGCAC
*
552105 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCATGGCAC
552132 C
1 C
552133 TTGTTCCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.24, C:0.38, G:0.13, T:0.25
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCATGGCAC
Found at i:552371 original size:49 final size:49
Alignment explanation
Indices: 552298--552915 Score: 497
Period size: 49 Copynumber: 12.7 Consensus size: 49
552288 TCTGTGGCAC
* * ** *
552298 CTTTAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * *
552347 CTTTAAGACCGATGTTGTTGGCCTTGAATCAGCACATTGGCACCTTAACCAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTT---CAT
* * * *
552399 CATTAAGTCCAATGTCGTCGGCCTTGAATCAGCACATTGGCATCTTCAA
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * * * *
552448 CTTTAAGTCCGATATCGCTGGCCTTGAATCAACATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* ** *
552497 CTTTAAGACCAATGTCACTGGCCTTGAATTAGCACATTGGCACCTTAACCAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTT---CAT
**** * * *
552549 CTTTAAGTCCAATGTTACCGGCCTTGAATCAACACATTAGCATCTTCAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
552598 CTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
552647 CTTTAAGACCAATGTCATTGTCCTTGAATCAACACATTGG------CA-
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * * * *
552689 C---AAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
552735 CTTTAAGACTAATGTCATTGGCCTTAAATCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * **
552784 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTAGCATTTTAACAT
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTT--CAT
* * * ** * *
552835 -TCCTAAGCCCAATGTCGCTGGCCTTGTCTCAGCACATTAGCA--TTCTT
1 CT-TTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * * *
552882 CTTCAAGTCTAATGTCGCTGGCCATGAATCAGCA
1 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCA
552916 TAGTGTCATT
Statistics
Matches: 451, Mismatches: 98, Indels: 42
0.76 0.17 0.07
Matches are distributed among these distances:
39 30 0.07
42 1 0.00
43 1 0.00
45 1 0.00
46 1 0.00
47 27 0.06
48 1 0.00
49 268 0.59
50 1 0.00
51 36 0.08
52 84 0.19
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (49 bp):
CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCAT
Found at i:552475 original size:101 final size:98
Alignment explanation
Indices: 552317--552817 Score: 477
Period size: 101 Copynumber: 5.2 Consensus size: 98
552307 CAATATCACT
* * *** *
552317 GGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCGATGTTGTTGGCCTTGAATCAGCAC
1 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAACAC
*
552382 ATTGGCACCTTAACCATCATTAAGTCCAATGTCGTC
66 ATTGGCACCTT---CATCTTTAAGTCCAATGTCGTC
* * * * * * *
552418 GGCCTTGAATCAGCACATTGGCATCTTCAACTTTAAGTCCGATATCGCTGGCCTTGAATCAACAT
1 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAACAC
* * *
552483 ATTGGCACCTTTATCTTTAAGACCAATGTC-AC
66 ATTGGCACCTTCATCTTTAAGTCCAATGTCGTC
* * * *
552515 TGGCCTTGAATTAGCACATTGGCACCTTAACCATCTTTAAGTCCAATGTTACCGGCCTTGAATCA
1 -GGCCTTGAATCAGCACATTGGCACCTT---CATCTTTAAGACCAATGTCACTGGCCTTGAATCA
* * * * *
552580 ACACATTAGCATCTTCATCTTTAAGTCCGATATCGTT
62 ACACATTGGCACCTTCATCTTTAAGTCCAATGTCGTC
* * * *
552617 GGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCATTGTCCTTGAATCAACAC
1 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAACAC
* *
552682 ATTGG------CA-C---AAGCCCAATATCG-C
66 ATTGGCACCTTCATCTTTAAGTCCAATGTCGTC
* * * * * * *
552704 TGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACTAATGTCATTGGCCTTAAATCAGCA
1 -GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAACA
* *
552769 CATTGGCACCTTCATCTTTAAGTCCAATATCGTT
65 CATTGGCACCTTCATCTTTAAGTCCAATGTCGTC
552803 GGCCTTGAATCAGCA
1 GGCCTTGAATCAGCA
552818 TATTAGCATT
Statistics
Matches: 333, Mismatches: 50, Indels: 37
0.79 0.12 0.09
Matches are distributed among these distances:
88 76 0.23
91 1 0.00
92 2 0.01
94 2 0.01
95 1 0.00
97 1 0.00
98 103 0.31
101 147 0.44
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (98 bp):
GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCACTGGCCTTGAATCAACAC
ATTGGCACCTTCATCTTTAAGTCCAATGTCGTC
Found at i:552571 original size:150 final size:150
Alignment explanation
Indices: 552298--552689 Score: 604
Period size: 150 Copynumber: 2.6 Consensus size: 150
552288 TCTGTGGCAC
* * * * * *
552298 CTTTAAGCCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGACCGATGTT
1 CTTTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
* **
552363 GTTGGCCTTGAATCAGCACATTGGCACCTTAACCATCATTAAGTCCAATGTCGTCGGCCTTGAAT
66 ATTGGCCTTGAATCAGCACATTGGCACCTTAACCATCATTAAGTCCAATGTCACCGGCCTTGAAT
* *
552428 CAGCACATTGGCATCTTCAA
131 CAACACATTAGCATCTTCAA
*
552448 CTTTAAGTCCGATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATGTC
1 CTTTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
* * * *
552513 ACTGGCCTTGAATTAGCACATTGGCACCTTAACCATCTTTAAGTCCAATGTTACCGGCCTTGAAT
66 ATTGGCCTTGAATCAGCACATTGGCACCTTAACCATCATTAAGTCCAATGTCACCGGCCTTGAAT
*
552578 CAACACATTAGCATCTTCAT
131 CAACACATTAGCATCTTCAA
*
552598 CTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
1 CTTTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
* *
552663 ATTGTCCTTGAATCAACACATTGGCAC
66 ATTGGCCTTGAATCAGCACATTGGCAC
552690 AAGCCCAATA
Statistics
Matches: 219, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
150 219 1.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (150 bp):
CTTTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
ATTGGCCTTGAATCAGCACATTGGCACCTTAACCATCATTAAGTCCAATGTCACCGGCCTTGAAT
CAACACATTAGCATCTTCAA
Found at i:552765 original size:88 final size:88
Alignment explanation
Indices: 552609--552777 Score: 284
Period size: 88 Copynumber: 1.9 Consensus size: 88
552599 TTTAAGTCCG
* * * *
552609 ATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCATTGTCCTTGA
1 ATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATGTCATTGGCCTTAA
552674 ATCAACACATTGGCACAAGCCCA
66 ATCAACACATTGGCACAAGCCCA
*
552697 ATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACTAATGTCATTGGCCTTAA
1 ATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATGTCATTGGCCTTAA
*
552762 ATCAGCACATTGGCAC
66 ATCAACACATTGGCAC
552778 CTTCATCTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 75 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (88 bp):
ATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATGTCATTGGCCTTAA
ATCAACACATTGGCACAAGCCCA
Found at i:552809 original size:137 final size:137
Alignment explanation
Indices: 552568--552814 Score: 350
Period size: 137 Copynumber: 1.8 Consensus size: 137
552558 CAATGTTACC
* * * * * *
552568 GGCCTTGAATCAACACATTAGCATCTTCATCTTTAAGTCCGATATCGTTGGCCTTGAATCAGCAT
1 GGCCTTGAATCAACACATTAGCACCTTCATCTTTAAGACCAATATCATTGGCCTTAAATCAGCAC
* * *
552633 ATTGGCACCTTTATCTTTAAGACCAATGTCATTGTCCTTGAATCAACACATTGGCACAAGCCCAA
66 ATTGGCACCTTCATCTTTAAGACCAATATCATTGGCCTTGAATCAACACATTGGCACAAGCCCAA
552698 TATCGCT
131 TATCGCT
* * * * *
552705 GGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACTAATGTCATTGGCCTTAAATCAGCAC
1 GGCCTTGAATCAACACATTAGCACCTTCATCTTTAAGACCAATATCATTGGCCTTAAATCAGCAC
* *
552770 ATTGGCACCTTCATCTTTAAGTCCAATATCGTTGGCCTTGAATCA
66 ATTGGCACCTTCATCTTTAAGACCAATATCATTGGCCTTGAATCA
552815 GCATATTAGC
Statistics
Matches: 94, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
137 94 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (137 bp):
GGCCTTGAATCAACACATTAGCACCTTCATCTTTAAGACCAATATCATTGGCCTTAAATCAGCAC
ATTGGCACCTTCATCTTTAAGACCAATATCATTGGCCTTGAATCAACACATTGGCACAAGCCCAA
TATCGCT
Found at i:553752 original size:20 final size:20
Alignment explanation
Indices: 553727--553781 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
553717 CTGCCAAGGA
553727 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTGA-TC
553747 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
553767 TTTGTATCGATACAT
1 AATGTATCGATACAT
553782 CTGGGAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:557505 original size:475 final size:474
Alignment explanation
Indices: 556564--559550 Score: 3797
Period size: 475 Copynumber: 6.3 Consensus size: 474
556554 ACGTTGCGAC
* * * *
556564 AATAAGGATGCATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCAACCAATTTTTGT
1 AATACGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGT
* *
556629 ACATTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCG
66 AAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCG
* * * *
556694 TGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAAGATATTTATGGTTTTCTTTTGCAT
131 TGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTGCAT
* * **
556759 GGAAATCTTTTTTTTGACTTGTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATT
196 GGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATT
* * * *
556824 GATTCTCGTAAGAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAATACATTCCCT-TCAATAGG
261 GATTCTCGTAAAAGTCTCCATTCTTCT-AAGATTGGGAACCAAAAACACATTCCCTAT-ATTAGG
* * * ** *
556888 ATACATGACATTGATGCTTTGGTGTCGCGAGAGAAGGTGTTCTCCCCACCATTATTGAAAGAATC
324 ATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCATTATTGATAGAATC
* * * *
556953 AAAGTTTGTCTCTTAAATAAGATAAACATGAATAGTCATACTAATCCACTTTTTTTTCTAGATTA
389 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTC-AGATTA
*
557018 GGCACTATAAACATAGTCTTCT
453 GGCACCATAAACATAGTCTTCT
* ** * *
557040 CAT-CAGGATACATGAT-TTGATGCTTTGGTTTCATAAGAAATGCTTTCTTCCCACTAATTTTTG
1 AATAC-GGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTG
* * * * * * *
557103 TAAAGTATAAGTTCATTCTTCAAATGAGACAAACATGGAATCTAGCAAGGATCTTCATTCATTTC
65 TAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTC
* * * *
557168 ATGATTAGGCACTATAAACACATTATCCCCAATAGGATAAATGATACTGATGGTTTTCTTTTGCC
130 GTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTGCA
* * * * *
557233 TGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGAGACAAGCAA
195 TGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCAT
* * *
557298 TGATTCTCGAAAAAGTCTCCATTCGTTCTTAGATTGGGAACCAAAAACACATTCCCTCTATTAGG
260 TGATTCTCGTAAAAGTCTCCATTC-TTCTAAGATTGGGAACCAAAAACACATTCCCTATATTAGG
* * *
557363 ATACATGACATTGATGCTTTTGTGTCGCAAGAGAAGCTTTTCTTTCCAACATTATTGACA-AAGT
324 ATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCATTATTGATAGAA-T
* * * *
557427 CAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCATTATTTTCAGGATT
388 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTCA-GATT
* *
557492 CGGCACCATAAACAGAGTCTTCT
452 AGGCACCATAAACATAGTCTTCT
* * * * * *
557515 TATACGGATACAGGATATTGATGATTTGGTTTCGCTAGAAATGCTTTTTTCCCA-CAATTTTTGT
1 AATACGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGT
* * * * * *
557579 AGATTCTATGTTCGTGCCTTAAATGAGACAAACAAGGATTCTAGTAAGGATCATCATTCATTTCA
66 AAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCG
* * * *
557644 TGATTAGGCACTATAAACACATTCTTCTC-TTCAGGATGCAA-GATATTGATGGTTTTCTTTTGC
131 TGATTAGGCACTATAAACACATTCTCCCCAAT-AGGAT-AAATGATATTGATGGTTTTCTTTTGC
* * *
557707 ATGGAAATCTTTTCCTTGCCTAATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACCTGCA
194 ATGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCA
* * *
557772 TTGATTCTCGTAAAAGTCTCCATTCTTTCTAATATTGGGAACCAATAACACATTCCCTATATTAT
259 TTGATTCTCGTAAAAGTCTCCATTC-TTCTAAGATTGGGAACCAAAAACACATTCCCTATATTAG
* * * *
557837 GATACATGACATTGATGCTTTGGCGTCACAAGAAAAGGTTTTCTTTCCACCATTATTGATAGAAT
323 GATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCATTATTGATAGAAT
* * *
557902 CAAAGTTTGTCTCTTAAATAAGACAAAAATGAATACTCATACTAATCCACATTGTTTTCTGGATT
388 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTC-AGATT
557967 AGGCACCATAAACATAGTCTTCT
452 AGGCACCATAAACATAGTCTTCT
* * * *
557990 AATAGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTTCAACCAATTTTTGT
1 AATACGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGT
558055 AAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCG
66 AAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCG
* * *
558120 TTATTAGGCACTCTAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTGCCT
131 TGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTGCAT
* * * * * *
558185 GGAAATATTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGAGACAAGCAAT
196 GGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATT
* * *
558250 CATTCTCGTAAAAGTCTCTATTCGTTCCAAGATTGGGAACCAAAAACACATTCCC----------
261 GATTCTCGTAAAAGTCTCCATTC-TTCTAAGATTGGGAACCAAAAACACATTCCCTATATTAGGA
* * *
558305 T---TGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATA-AAGCC
325 TACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCATTATTGATAGAA-TC
* * * * * *
558366 AAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTTATAGTAATCCCCATTATTTTCAAGATTC
389 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTC-AGATTA
* * *
558431 GGCATCATAAACAGAGTTTTCT
453 GGCACCATAAACATAGTCTTCT
* * * * * * * *
558453 TATACGGATACAGGATATTGATGATTTGGCTTCGCTAGAGACGTTTTTTTCCCA-CAATTTTTGT
1 AATACGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGT
* * * * * *
558517 AGATTCTATGTTTGTGCCTCAAATGAGATAAACATGGATTCTAGTAAGGATCATCATTCATTTCA
66 AAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCG
* **
558582 TGATTAGGCACTATAAACACATTCTCCTCC-ACAGGATGCATGATATTGATGGTTTTCTTTTGCA
131 TGATTAGGCACTATAAACACATTCTCC-CCAATAGGATAAATGATATTGATGGTTTTCTTTTGCA
558646 TGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCAT
195 TGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCAT
* * *
558711 TGATTCTTGTAAAAGTCTCCATTCTTTCTAATATTGGGAACCAAAAACACATTCCCTATATTACG
260 TGATTCTCGTAAAAGTCTCCATTC-TTCTAAGATTGGGAACCAAAAACACATTCCCTATATTAGG
** ** *
558776 ATACATGACATTGATGCTTTGGCATCATAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATC
324 ATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCATTATTGATAGAATC
* * * *
558841 AAAGTTTGTCTCTTAAATAAGACAAACATGAAAACTCACACTAATCCACATTCTTTTCTAGAGTA
389 AAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTC-AGATTA
*
558906 GGCACCATAAACATAGTCTTCA
453 GGCACCATAAACATAGTCTTCT
*
558928 AATAGGGATACATGATATTGATG-TTATGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTG
1 AATACGGATACATGATATTGATGCTT-TGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTG
* * * *
558992 TAAATTCTAAGTTCATGCGTCAAATGAGACAAACATGGATTCTAGTAAGAATTTTCATTCATTTC
65 TAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTC
* * * * * *
559057 GTGATTAGGCACTATAAACAGATTCTCCACATTAGGATAAATGATACTGATGCCTTTTTTTTTTT
130 GTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATATTGATG---GTTTTCTTTT
* * *
559122 GCATGAAAATCTTTTTTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATG
192 GCATGGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATG
* * *
559187 CATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATT-CCTTTCAT
257 CATTGATTCTCGTAAAAGTCTCCATTCTTCT-AAGATTGGGAACCAAAAACACATTCCCTAT-AT
* * * *
559251 TAGAATACATGACATTGATACTTTAGG-GTCGCAAGAGAAGC-TTTCTTCCCACCGTTATTGATA
320 TAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAGAAGCTTTTCTTTCCACCATTATTGATA
* * * *
559314 GAATCAAAG-TTGTCTCTTAAATGAGACAAACATGAATACCCA-ACTATTCCCCATCT-TTTTCA
384 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACAT-TATTTTC-
* *
559376 AGATTAGGCACCATAAACATGGCCTTCT
447 AGATTAGGCACCATAAACATAGTCTTCT
* * * * * **
559404 CATAAAGG-TACATGATATTGATGCTTTGG-CTCACAAGATACGCTTTCTTCCCACTTATTTTTG
1 AAT-ACGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTG
* * ** * * *
559467 TAAAGTATAAGTTTATTCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTT
65 TAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTC
559532 GTGATTAGGCACTATAAAC
130 GTGATTAGGCACTATAAAC
559551 TTGAATAAAA
Statistics
Matches: 2168, Mismatches: 301, Indels: 85
0.85 0.12 0.03
Matches are distributed among these distances:
462 235 0.11
463 168 0.08
466 1 0.00
472 1 0.00
474 6 0.00
475 1081 0.50
476 448 0.21
477 37 0.02
478 37 0.02
479 152 0.07
480 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (474 bp):
AATACGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACCAATTTTTGT
AAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCG
TGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTGCAT
GGAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATT
GATTCTCGTAAAAGTCTCCATTCTTCTAAGATTGGGAACCAAAAACACATTCCCTATATTAGGAT
ACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCACCATTATTGATAGAATCAA
AGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCACATTATTTTCAGATTAGGC
ACCATAAACATAGTCTTCT
Found at i:558619 original size:938 final size:941
Alignment explanation
Indices: 556577--559550 Score: 4173
Period size: 938 Copynumber: 3.1 Consensus size: 941
556567 AAGGATGCAT
* * * * *
556577 GATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCAACCAATTTTTGTACATTCTAAGTTT
1 GATATTGATGATTTGGCTTCGCAAGAAACGCTTTCTTCCCA-CAATTTTTGTAGATTCTAAGTTT
* *
556642 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTA
65 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTA
* ** * *
556707 TAAACACATTCTCCT-CATTAGGATAAAAGATATTTATGGTTTTCTTTTGCATGGAAATCTTTTT
130 TAAACACATTCTCCTCCA-CAGGATGCAAGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
* ** *
556771 TTTGACTTGTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAG
194 TTTGCCTAATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAA
* * * *
556836 AGTCTCCATTCTTT-TCAAGATTGGGAACCAAAAATACATTCCCT-TCAATAGGATACATGACAT
259 AGTCTCCATTCTTTCT-AATATTGGGAACCAAAAACACATTCCCTAT-ATTACGATACATGACAT
* * * * ** *
556899 TGATGCTTTGGTGTCGCGAGAGAAGGTGTTCTCCCCACCATTATTGAAAGAATCAAAGTTTGTCT
322 TGATGCTTTGGCGTCACAAGAGAAGGTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGTCT
* * * * *
556964 CTTAAATAAGATAAACATGAATAGTCATACTAATCCACTTTTTTTTCTAGATTAGGCACTATAAA
387 CTTAAATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCTAGATTAGGCACCATAAA
* * ** *
557029 CATAGTCTTCTCATCA-GGATACATGAT-TTGATGCTTTGGTTTCATAAGAAATGCTTTCTTCCC
452 CATAGTCTTCTAAT-AGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTCCC
* * * * * * *
557092 ACTAATTTTTGTAAAGTATAAGTTCATTCTTCAAATGAGACAAACATGGAATCTAGCAAGGATCT
516 ACCAATTTTTGTAAATTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCT
* *
557157 TCATTCATTTCATGATTAGGCACTATAAACACATTATCCCCAATAGGATAAATGATACTGATGGT
581 TCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATACTGATGGT
557222 TTTCTTTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAAT
646 TTTCTTTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAAT
* **
557287 GAGACAAGCAATGATTCTCGAAAAAGTCTCCATTCGTTCTTAGATTGGGAACCAAAAACACATTC
711 GAGACAAGCAATGATTCTCGTAAAAGTCTCCATTCGTTCCAAGATTGGGAACCAAAAACACATT-
* *
557352 CCTCTATTAGGATACATGACATTGATGCTTTTGTGTCGCAAGAGAAGCTTTTCTTTCCAACATTA
775 CCTC-------AT--ATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTA
*
557417 TTGACAAAGTCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCATTAT
831 TTGATAAAGTCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCATTAT
*
557482 TTTCAGGATTCGGCACCATAAACAGAGTCTTCTTATACGGATACAG
896 TTTCAAGATTCGGCACCATAAACAGAGTCTTCTTATACGGATACAG
* * * * * *
557528 GATATTGATGATTTGGTTTCGCTAGAAATGCTTTTTTCCCACAATTTTTGTAGATTCTATGTTCG
1 GATATTGATGATTTGGCTTCGCAAGAAACGCTTTCTTCCCACAATTTTTGTAGATTCTAAGTTTG
* *
557593 TGCCTTAAATGAGACAAACAAGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTAT
66 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTAT
* ** *
557658 AAACACATTCTTCTCTTCAGGATGCAAGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCCT
131 AAACACATTCTCCTCCACAGGATGCAAGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTT
*
557723 TGCCTAATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACCTGCATTGATTCTCGTAAAAG
196 TGCCTAATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAG
* *
557788 TCTCCATTCTTTCTAATATTGGGAACCAATAACACATTCCCTATATTATGATACATGACATTGAT
261 TCTCCATTCTTTCTAATATTGGGAACCAAAAACACATTCCCTATATTACGATACATGACATTGAT
*
557853 GCTTTGGCGTCACAAGAAAAGGTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTTA
326 GCTTTGGCGTCACAAGAGAAGGTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTTA
* * *
557918 AATAAGACAAAAATGAATACTCATACTAATCCACATTGTTTTCTGGATTAGGCACCATAAACATA
391 AATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCTAGATTAGGCACCATAAACATA
* *
557983 GTCTTCTAATAGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTTCAACCAA
456 GTCTTCTAATAGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTCCCACCAA
*
558048 TTTTTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
521 TTTTTGTAAATTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
* * *
558113 CATTTCGTTATTAGGCACTCTAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCT
586 CATTTCGTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATACTGATGGTTTTCT
*
558178 TTTGCCTGGAAATATTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGAGAC
651 TTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGAGAC
* *
558243 AAGCAATCATTCTCGTAAAAGTCTCTATTCGTTCCAAGATTGGGAACCAAAAACACATTCC-C-T
716 AAGCAATGATTCTCGTAAAAGTCTCCATTCGTTCCAAGATTGGGAACCAAAAACACATTCCTCAT
*
558306 -TGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAGCCAAAG
781 ATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAGTCAAAG
*
558370 TTTGTCTCTTAAATAAGGCAAACTTGAATACTTATAGTAATCCCCATTATTTTCAAGATTCGGCA
846 TTTGTCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCATTATTTTCAAGATTCGGCA
* *
558435 TCATAAACAGAGTTTTCTTATACGGATACAG
911 CCATAAACAGAGTCTTCTTATACGGATACAG
* * * * *
558466 GATATTGATGATTTGGCTTCGCTAGAGACGTTTTTTTCCCACAATTTTTGTAGATTCTATGTTTG
1 GATATTGATGATTTGGCTTCGCAAGAAACGCTTTCTTCCCACAATTTTTGTAGATTCTAAGTTTG
*
558531 TGCCTCAAATGAGATAAACATGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTAT
66 TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTAT
*
558596 AAACACATTCTCCTCCACAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTT
131 AAACACATTCTCCTCCACAGGATGCAAGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTT
* *
558661 TGCCTCATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTTGTAAAAG
196 TGCCTAATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAG
558726 TCTCCATTCTTTCTAATATTGGGAACCAAAAACACATTCCCTATATTACGATACATGACATTGAT
261 TCTCCATTCTTTCTAATATTGGGAACCAAAAACACATTCCCTATATTACGATACATGACATTGAT
* * * *
558791 GCTTTGGCATCATAAGAGAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTA
326 GCTTTGGCGTCACAAGAGAAGGTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTTA
* * *
558856 AATAAGACAAACATGAAAACTCACACTAATCCACATTCTTTTCTAGAGTAGGCACCATAAACATA
391 AATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCTAGATTAGGCACCATAAACATA
* *
558921 GTCTTCAAATAGGGATACATGATATTGATGTTATGGTTTCGCAAGAAACGCTTTCTTCCCACCAA
456 GTCTTCTAATAGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTCCCACCAA
* * *
558986 TTTTTGTAAATTCTAAGTTCATGCGTCAAATGAGACAAACATGGATTCTAGTAAGAATTTTCATT
521 TTTTTGTAAATTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
* * * *
559051 CATTTCGTGATTAGGCACTATAAACAGATTCTCCACATTAGGATAAATGATACTGATGCCTTTTT
586 CATTTCGTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATACTGATG---GTTT
* * * * * * * *
559116 TTTTTTGCATGAAAATCTTTTTTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGA
648 TCTTTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGA
* * * * *
559181 GACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCT
713 GACAAGCAATGATTCTCGTAAAAGTCTCCATTCGTTCCAAGATTGGGAACCAAAAACACATTCC-
* * *
559246 TTCATTAGAATACATGACATTGATACTTTAGG-GTCGCAAGAGAAGC-TTTCTTCCCACCGTTAT
777 -TC------AT--ATGACATTGATGCTTT-GGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTAT
* * * * * *
559309 TGATAGAA-TCAAAG-TTGTCTCTTAAATGAGACAAACATGAATACCCA-ACTATTCCCCATCT-
832 TGATA-AAGTCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCAT-TA
* * * * *
559370 TTTTCAAGATTAGGCACCATAAACATG-GCCTTCTCATAAAGG-TACAT
895 TTTTCAAGATTCGGCACCATAAACA-GAGTCTTCTTAT-ACGGATACAG
* * * * * * *
559417 GATATTGATGCTTTGGC-TCACAAGATACGCTTTCTTCCCACTTATTTTTGTAAAGTATAAGTTT
1 GATATTGATGATTTGGCTTCGCAAGAAACGCTTTCTTCCCAC-AATTTTTGTAGATTCTAAGTTT
* * * * **
559481 ATTCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGGCACTA
65 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTA
559546 TAAAC
130 TAAAC
559551 TTGAATAAAA
Statistics
Matches: 1819, Mismatches: 177, Indels: 54
0.89 0.09 0.03
Matches are distributed among these distances:
938 752 0.41
941 117 0.06
944 1 0.00
949 2 0.00
950 409 0.22
951 448 0.25
952 33 0.02
953 25 0.01
954 30 0.02
955 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (941 bp):
GATATTGATGATTTGGCTTCGCAAGAAACGCTTTCTTCCCACAATTTTTGTAGATTCTAAGTTTG
TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTAT
AAACACATTCTCCTCCACAGGATGCAAGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTT
TGCCTAATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAG
TCTCCATTCTTTCTAATATTGGGAACCAAAAACACATTCCCTATATTACGATACATGACATTGAT
GCTTTGGCGTCACAAGAGAAGGTTTTCTTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTTA
AATAAGACAAACATGAATACTCATACTAATCCACATTCTTTTCTAGATTAGGCACCATAAACATA
GTCTTCTAATAGGGATACATGATATTGATGCTATGGTTTCGCAAGAAACGCTTTCTTCCCACCAA
TTTTTGTAAATTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATT
CATTTCGTGATTAGGCACTATAAACACATTCTCCCCAATAGGATAAATGATACTGATGGTTTTCT
TTTGCCTGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGAACTCTAAATGAGAC
AAGCAATGATTCTCGTAAAAGTCTCCATTCGTTCCAAGATTGGGAACCAAAAACACATTCCTCAT
ATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAGTCAAAG
TTTGTCTCTTAAATAAGGCAAACTTGAATACTCATAGTAATCCCCATTATTTTCAAGATTCGGCA
CCATAAACAGAGTCTTCTTATACGGATACAG
Found at i:560443 original size:470 final size:468
Alignment explanation
Indices: 559556--560892 Score: 1711
Period size: 470 Copynumber: 2.8 Consensus size: 468
559546 TAAACTTGAA
* * *
559556 TAAAATCAAAGTTTGTACTTCAAATGAGACATGCATTGATTC-CTGTAAGAGTCTCCGTTCTTTT
1 TAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTC-GTAAAAGTCTCCATTCTTTT
* * *
559620 CAAGATTGGGAACCAAAAACACATTCCGTTCATTAGGATATATGACATTGATGCTTTGGTGTCTC
65 CAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATACTTTGGTGTC-C
* * *
559685 AAGAAAAGCTGTT-TTCCTCACCGTTATTGATAGAATCAAAGTTTGTCCCTTAAATAAGACAAAC
129 AAGAAAAGCTTTTCTTTC-CACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAG---AAC
* * * * * *
559749 ATGAATAGTCATACTAATCCACTTTCTTTTCTAGATTGGGCACCATAAACATACTCTTCTCATAA
190 A--AATACTCATACTAATCCACATTCTTTTC-AGATTAGCCA-CATAAACATAGTCTTCTCAAAA
* * * * *
559814 GGATACATGATACTGATGCTTTGGTTTCGTAAAAAATGCTTTCTTCCCACTAAGTTTTGTAAAGT
251 GGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCTACCAAGTTTTGTAAAGT
* * *
559879 ATAAGTTCATTCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCATTTCGTGATT
316 ATAAGTTCAATCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTTATTTCGTGATT
* *
559944 AGGCACTATAAACACATTCTCCGCTTTAGGATAAATGATATTGATGGTTTTCCTTTGCATGGAAA
381 AGGTACTATAAACACATTCTCCGCTTTAGGATAAATGATATTGATGGTTTTCCTTTGCATAGAAA
*
560009 TCTTTTCTTTGCCT-TATTTTCCT
446 TCTTTTCTTTGCCTCGA-TTTCCT
* *
560032 TAAAATCAAAGTTTGTACTTTAAATGAGACATGCACTGATTCTCATAAAAGTCTCCATTCTTTTC
1 TAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTC
* * *
560097 AAGATTGCGAACCAAAAACACATTCCCTTCGTTAGGATACATGACTTTGATACTTTGGTGTCGCA
66 AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATACTTTGGTGTC-CA
* * *
560162 AGAAAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTCTGTCTCTTAAATAAG-ACAAATA
130 AGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGAACAAATA
* * * * **
560226 CTCTTACAAATCCCCATTCTTTTCAGTATTAGCCAACATAAACATAGTCTTGTCAAAACAATACA
195 CTCATACTAATCCACATTCTTTTCAG-ATTAGCC-ACATAAACATAGTCTTCTCAAAAGGATACA
* * *
560291 TGATATTAAGGCTTTGGTTTCGCAAGAAATGCTTTCTTCCTACCAAGTTTTGTAAAGTATGAGTT
258 TGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCTACCAAGTTTTGTAAAGTATAAGTT
*
560356 CAATCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTTATTTTGTGATTAGGTACT
323 CAATCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTTATTTCGTGATTAGGTACT
* * *
560421 ATAAATACATTCTCCTCTTTAGGATAAATGATATTGATGGTTTTCTTTTGCATAGAAATCTTTTC
388 ATAAACACATTCTCCGCTTTAGGATAAATGATATTGATGGTTTTCCTTTGCATAGAAATCTTTTC
560486 TTTGCCTCGATTTCCT
453 TTTGCCTCGATTTCCT
*
560502 TAAAATCAAAGTTTGTGCTTTAAA-GAAGACATGCATTGATTCTCGTAAAAGTCTCCATTC-TTT
1 TAAAATCAAAGTTTGTACTTTAAATG-AGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTT
* * * * *
560565 CTAATATTGGGAACCAAGAACACATTCCCTTTATTAGGATGCATGACATTGACACTTTGGTGTCC
65 C-AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATACTTTGGTGTCC
* * * *
560630 TAAGAGAAGCTTTTCTTTCCACCATTATTAATAGAATCAAAGTTTATCTCTTAAATAAGACAAAC
129 -AAGAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAG---AAC
* * * *
560695 ATAAATACTCGTACTAATCCACATTCTTTTCTGGATTAGGCC-CTTAATCATAGTCTTCT-AATA
190 --AAATACTCATACTAATCCACATTCTTTTC-AGATTA-GCCACATAAACATAGTCTTCTCAA-A
* * * ** *
560758 AGGATACATGATATTGATGCTTTCGTTTCTCAGGAAACACTTTCTTCCTACCAAGTTTTGTAAAT
250 AGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCTACCAAGTTTTGTAAAG
* * * ** * *
560823 TCTAAGTTC-GTGCTTCAAATGAGACAGGCATGGATTCCAGTAAGGATCTTCATTTATTTCATGA
315 TATAAGTTCAAT-CCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTTATTTCGTGA
560887 TTAGGT
379 TTAGGT
560893 TTCTTTTGCA
Statistics
Matches: 751, Mismatches: 92, Indels: 37
0.85 0.10 0.04
Matches are distributed among these distances:
469 8 0.01
470 403 0.54
471 2 0.00
472 3 0.00
474 5 0.01
475 129 0.17
476 193 0.26
477 8 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (468 bp):
TAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTC
AAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATACTTTGGTGTCCAA
GAAAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGAACAAATAC
TCATACTAATCCACATTCTTTTCAGATTAGCCACATAAACATAGTCTTCTCAAAAGGATACATGA
TATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCTACCAAGTTTTGTAAAGTATAAGTTCAA
TCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTTATTTCGTGATTAGGTACTATA
AACACATTCTCCGCTTTAGGATAAATGATATTGATGGTTTTCCTTTGCATAGAAATCTTTTCTTT
GCCTCGATTTCCT
Found at i:561273 original size:430 final size:430
Alignment explanation
Indices: 560462--561321 Score: 1259
Period size: 430 Copynumber: 2.0 Consensus size: 430
560452 TATTGATGGT
**
560462 TTTCTTTTGCATAGAAATCTTTTCTTTGCCTCGATTTCCTTAAAATCAAAGTTTGTGCTTTAAAG
1 TTTCTTTTGCATAGAAATCTTTTCTTTGCCTCGATTTCCTTAAAATCAAAGTTTGTAATTTAAAG
* * *
560527 AAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCTAATATTGGGAACCAAGAACACATTC
66 AAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCTAAGATTAGGAACCAAAAACACATTC
* * *
560592 CCTTTATTAGGATGCATGACATTGACACTTTGGTGTCCTAAGAGAAGCTTTTCTTTCCACCATTA
131 CCTTTATTAGGATACATGACATTGACACTTTGGTGTCCTAAGAGAAGCCTGTCTTTCCACCATTA
*
560657 TTAATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATAAATACTCGTACTAATCCACATTCT
196 TTAATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATAAATACTCATACTAATCCACATTCT
* * *
560722 TTTCTGGATTAGGCCCTTAATCATAGTCTTCTAATAAGGATACATGATATTGATGCTTTCGTTTC
261 TTTCTAGATTAGGCCCATAAACATAGTCTTCTAATAAGGATACATGATATTGATGCTTTCGTTTC
* * * * * **
560787 TCAGGAAACACTTTCTTCCTACCAAGTTTTGTAAATTCTAAGTTCGTGCTTCAAATGAGACAGGC
326 TCAAGAAACACTTTCGTCCCACCAAGTTTTGTAAATTCTAAGTTCATGCCTCAAATGAGACAAAC
*
560852 ATGGATTCCAGTAAGGATCTTCATTTATTTCATGATTAGG
391 ATGGATTCCAGTAAGGATCTTCATTTATTTCAAGATTAGG
* *
560892 TTTCTTTTGCATAGAAATCTTTTCTTTGCCTTGCTTTCCTTAAAATCAAAGTTTGTAATTTAAAT
1 TTTCTTTTGCATAGAAATCTTTTCTTTGCCTCGATTTCCTTAAAATCAAAGTTTGTAATTTAAA-
560957 G-AGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTT-TCAAGATTAGGAACCAAAAACACAT
65 GAAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCT-AAGATTAGGAACCAAAAACACAT
* **
561020 T-CCTTTGATTAGGATATATGACATTGATGCTTTGGTGTCGC-AAGAGAAGCCTGTCTTTCCACC
129 TCCCTTT-ATTAGGATACATGACATTGACACTTTGGTGTC-CTAAGAGAAGCCTGTCTTTCCACC
* * * *
561083 GA-TATTGATAGAATCAAAG-TTGTCTCTTAAATAGGACAAACATAAATACTCATACTAATCCCC
192 -ATTATTAATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATAAATACTCATACTAATCCAC
* **
561146 ATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATGCGGATACATGATATTGATGCTTT
256 ATTCTTTTCTAGATTAGGC-CCATAAACATAGTCTTCTAATAAGGATACATGATATTGATGCTTT
* * *
561211 GGTTT-TGCAAGATACGCTTTCGTCCCACCAA-TTTGTGTAAATTCTAAGTTCATGCCTCAAATG
320 CGTTTCT-CAAGAAACACTTTCGTCCCACCAAGTTT-TGTAAATTCTAAGTTCATGCCTCAAATG
* *
561274 AGATAAACATGGATTCTAGTAAGGATCTTCATTTATTTCAAGATTAGG
383 AGACAAACATGGATTCCAGTAAGGATCTTCATTTATTTCAAGATTAGG
561322 CACTATAAAC
Statistics
Matches: 385, Mismatches: 37, Indels: 16
0.88 0.08 0.04
Matches are distributed among these distances:
429 68 0.18
430 314 0.82
431 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (430 bp):
TTTCTTTTGCATAGAAATCTTTTCTTTGCCTCGATTTCCTTAAAATCAAAGTTTGTAATTTAAAG
AAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCTAAGATTAGGAACCAAAAACACATTC
CCTTTATTAGGATACATGACATTGACACTTTGGTGTCCTAAGAGAAGCCTGTCTTTCCACCATTA
TTAATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATAAATACTCATACTAATCCACATTCT
TTTCTAGATTAGGCCCATAAACATAGTCTTCTAATAAGGATACATGATATTGATGCTTTCGTTTC
TCAAGAAACACTTTCGTCCCACCAAGTTTTGTAAATTCTAAGTTCATGCCTCAAATGAGACAAAC
ATGGATTCCAGTAAGGATCTTCATTTATTTCAAGATTAGG
Found at i:562071 original size:395 final size:396
Alignment explanation
Indices: 561327--562121 Score: 1229
Period size: 395 Copynumber: 2.0 Consensus size: 396
561317 TTAGGCACTA
** * *
561327 TAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATCAGGATAAAAGATATTGATGGTTTTCTTTTGCATAGAAATCTTTTCT
* * **
561392 TTGCCTTATTTTCCATAAAATCATAGTTTGCACTTTAACTGAAACATGCATTGATTCTCGTAACA
66 TTGCCTTACTTTCCATAAAATCAAAGTTTGCACTTTAAAAGAAACATGCATTGATTCTCGTAACA
* * *
561457 ATCTCCATCCTTTTCAAGGTTAGGAACCAAAAACACGCGCCTTTCATTAAGATACATGACATTGC
131 ATCTCCATCCTTTTCAAGATTAGGAACCAAAAACACACGCCTTTCATTAAGATACATGACATTGA
* * *
561522 TGCTTTGGTGTCGCAAGAGAAGCTTGCCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTA
196 TGCTTTGGTGTCGCAAGAGAAGCTTGCATTTCCACCATTATTGATAGAATCAAAGTAGTCTCTTA
561587 AATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
261 AATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* *
561652 GTCTTCTTATACGGAAACATGATATTGATGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAA
326 GTCTTCTTATACGAAAACATGATATTGATGCTTTGGTTTCGCAAGATACGCTTTCGTCCCACCAA
561717 TTTGTG
391 TTTGTG
*
561723 TAAA-ACATTCTCCTCA-CTAGGATAAAAGATATTGATGGTTTTCTTTTGTATAGAAATCTTTTC
1 TAAACACATTCTCCTCATC-AGGATAAAAGATATTGATGGTTTTCTTTTGCATAGAAATCTTTTC
* * *
561786 TTTGCCTTACTTTCCTTAAAATCAAAGTTTGTACTTTAAAAGAGACATGCATTGATTCTCGTAA-
65 TTTGCCTTACTTTCCATAAAATCAAAGTTTGCACTTTAAAAGAAACATGCATTGATTCTCGTAAC
* ** *
561850 AAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATT
130 AA-TCTCCATCCTTTTCAAGATTAGGAACCAAAAACACACGCCTTTCATTAAGATACATGACATT
** * *
561915 GATGCTTTGGTGTCGTGAGAGAAGCTTGTATTTCCACCATTATTGATGGAATCAAAGTAGTCTCT
194 GATGCTTTGGTGTCGCAAGAGAAGCTTGCATTTCCACCATTATTGATAGAATCAAAGTAGTCTCT
* * *
561980 TAAATAGGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACA
259 TAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
* * *
562045 TAGTCTTCTTATGC-AAATATATGATATTGATGCTTTGGTTTTGCAAGATACGCTTTCGTCCCAC
324 TAGTCTTCTTATACGAAA-ACATGATATTGATGCTTTGGTTTCGCAAGATACGCTTTCGTCCCAC
562109 CAATTTGTG
388 CAATTTGTG
562118 TAAA
1 TAAA
562122 TTCTAAGTTC
Statistics
Matches: 362, Mismatches: 34, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
394 5 0.01
395 353 0.98
396 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (396 bp):
TAAACACATTCTCCTCATCAGGATAAAAGATATTGATGGTTTTCTTTTGCATAGAAATCTTTTCT
TTGCCTTACTTTCCATAAAATCAAAGTTTGCACTTTAAAAGAAACATGCATTGATTCTCGTAACA
ATCTCCATCCTTTTCAAGATTAGGAACCAAAAACACACGCCTTTCATTAAGATACATGACATTGA
TGCTTTGGTGTCGCAAGAGAAGCTTGCATTTCCACCATTATTGATAGAATCAAAGTAGTCTCTTA
AATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
GTCTTCTTATACGAAAACATGATATTGATGCTTTGGTTTCGCAAGATACGCTTTCGTCCCACCAA
TTTGTG
Found at i:562710 original size:475 final size:476
Alignment explanation
Indices: 561723--565005 Score: 4229
Period size: 475 Copynumber: 6.9 Consensus size: 476
561713 CCAATTTGTG
* * * *
561723 TAAA-ACATTCTCCTCA-CTAGGATAAAAGATATTGATGGTTTTCTTTTGTATAGAAATCTTTTC
1 TAAACACATTCTCCTCATC-AGGATACATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
* *
561786 TTTGCCTTACTTTCCTTAAAATCAAAGTTTGTACTTTAAAAGAGACATGCATTGATTCTCGTAAA
65 TTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAA
* *
561851 AGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTG
130 AGTCTCCATCCTTTTCAAGATTAGGAACCAAAAACACATTCCTCTCATTAGGATACATGACATTG
** * * * *
561916 ATGCTTTGGTGTCGTGAGAGAAGCTTGTATTTCCACCATTATTGATGGAATCAAAG-TAGTCTCT
195 ATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCT
* *
561980 TAAATAGGACAAACATGAATACTCATACTAATCCCCATTCTTTTCGGGATTAGGCACCATAAACA
260 TAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
* * * * *
562045 TAGTCTTCTTATGCAA--ATATATGATATTGATGCTTTGGTTTTGCAAGATACGCTTTCGTCCCA
325 TAGTCTTCTTAT--AAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCCA
*
562108 CCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGTAAGGATCTT
388 CCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTT
* * *
562173 TATTTATTTCAAGATTAGGCACTA
453 CATTCATTTCATGATTAGGCACTA
*
562197 TAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATCAGGATACATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* * * * *
562262 TTGCCTTATTTTCCATAAAATCATAGTTTGCACTTTAAATGAAACATGCATTGATTCTCGTAACA
66 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAA
* * * * *
562327 GTCTCCATCCATTTCAAGATTAGGAACCAAAAGCACATTCCTCTCATTAGGATACAAGACAATGT
131 GTCTCCATCCTTTTCAAGATTAGGAACCAAAAACACATTCCTCTCATTAGGATACATGACATTGA
* * *
562392 TGCTTTGGTGTTGCAAGAGAAGCTTGTCTTTCCACCTTTATTGATGGAATCAAAGTTTGTCTCTT
196 TGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTT
* * * *
562457 AAATAGGACAAACAGGAATACTCATACTAATCCACATTCTTTTTCA-GATTAGGCACCAAAAACA
261 AAATAAGACAAACATGAATACTCATACTAATCCCCATTC-TTTTCAGGATTAGGCACCATAAACA
* * * * *
562521 TAGTATTCTCATAAGGATACATGATATTAATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCCCC
325 TAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCCACC
* * * * * * * * *
562586 AACTTT-TGTAAAGTATCACTTCATTCCTCAAATTAGACAAACATGGATTCTAGCAACGATCTTC
390 AA-TTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTC
*
562650 ATTCATTTCGTGATTAGGCACTA
454 ATTCATTTCATGATTAGGCACTA
* * * *
562673 TAAACACATTCTCCTCATTAGGATAAATGGT-TTGATGGTTTTCTTTTGCATCGAAATCTTTTCT
1 TAAACACATTCTCCTCATCAGGATACATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* * * *
562737 TTGCCTTATTCTCTTTAAAATAAAAGTTTGTACTTTAAATGAGACATTCATTGATTCTCGTAAAA
66 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAA
* * * *
562802 GTCTCCA-CTCTTTCCAAGAATAGGATCCAAAAACACTTTCC-CTTCATTAGGATACATGACATT
131 GTCTCCATC-CTTTTCAAGATTAGGAACCAAAAACACATTCCTC-TCATTAGGATACATGACATT
* * * * * * * *
562865 GGTGCTTTGGTGTTGCGAGAGAAGCTTTTCTTCCCACCGTGAATGAT-GAAATCAAAGTTTATCT
194 GATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAG-AATCAAAGTTTGTCT
*
562929 CTTAAATAAGACAAACATGAATGCTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
258 CTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * * *
562994 CATAGTCTTATCATAAGGATACAGGATATTGATGATTTGGTTTCGCAAGAAATGCTTTTTTCCCA
323 CATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCCA
* **
563059 TCAATTT-TAGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATCAATTCTAGTAAGGATCT
388 CCAATTTGT-GTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCT
* *
563123 TCATTCATTTCTTGACTAGGCACTA
452 TCATTCATTTCATGATTAGGCACTA
* * *
563148 TAAACACATTCTCCTCGTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT
1 TAAACACATTCTCCTCATCAGGATACATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* * * * * *
563213 TTGCCTTATTTTCCATAAAATCAAAGTGTGCACTTTAAATGAGACATGCATTGATTCTTGTGACA
66 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAA
* * * *
563278 GTCTCCATTCTTTTCAAGATTAGAAACCAAAAACACATTCCTTTCATTAGGATACATGACATTAA
131 GTCTCCATCCTTTTCAAGATTAGGAACCAAAAACACATTCCTCTCATTAGGATACATGACATTGA
* * * * * *
563343 AGCTTTGGTGTTGCAAGAGAAGCTTGTATTTTCGCCGTTACTGATAGAATCAAAGTTT-TCTCTT
196 TGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTT
* * * *
563407 AAATAAGACAAACATGAATACTCATACTAAACCCCATTCTTTTCTGGATTAGGCATCATAAACTT
261 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * *
563472 AGTCTTTTTATACGGATACATGATATTGATGCTTCGGTGTCGCAAGATACGCTTT-TGTCCCACC
326 AGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCT-TCCCACC
* *
563536 AATTTGTGTAAATTCTAAGTTTGTTCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCA
390 AATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCA
563601 TTCATTTCATGATTAGGCACTA
455 TTCATTTCATGATTAGGCACTA
* *
563623 TAAACAC--TCTCCTCATCAGGATGCATAATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
1 TAAACACATTCTCCTCATCAGGATACATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* * ** ** * *
563686 TTGCCTTATTTTCCATAATATCAAAGTTTCCACAATAAATGAGACATGCATTGATTCTCATAACA
66 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAA
* * * * *
563751 GTCCCCATTCTTTTCAAGATTAGGAACGAAAAACACATTCCTTTTATTAGGATACATGACATTGA
131 GTCTCCATCCTTTTCAAGATTAGGAACCAAAAACACATTCCTCTCATTAGGATACATGACATTGA
*
563816 TGCTTTGGTGTCGCAAGAAAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG--TGTCTCTT
196 TGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTT
* * * *
563879 AAATAAGACAAACATGAGTACTCATACTAATCCCCATTCTTTTTAGGATTAGGCAGCTTAAACAT
261 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * *
563944 AGTTTTCTTATAAGGATACATGATAATGATGCTTTGGTTTCACAAGATATGCTTTCTTCCCACCA
326 AGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCCACCA
* * * *
564009 ATTTGTGTAAATTATGAGTTCGTTG-CTCAAATGAGATAAACATGGATTCCT-GTAAGGATCTTT
391 ATTTGTGTAAATTCTAAGTTCG-TGCCTCAAATGAGACAAACATGGATT-CTAGTAAGGATCTTC
* *
564072 ATTCGTCTCATGATTAGGCACTA
454 ATTCATTTCATGATTAGGCACTA
* * * * * *
564095 TAAACACATTCTCCGCTTTAGGATAAATGATATTGATGGTTTTCCTTTGCATGAAAATCTTTTCT
1 TAAACACATTCTCCTCATCAGGATACATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* *
564160 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTGCTTTAAATGAGACGTGCATTGATTCTCGT-AAA
66 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAA
* * *
564224 G-GT---T-CTTTTCAAGATT-GTGAACCAAAAATACATTCC-CTTCATTAGGATATATGACATT
131 GTCTCCATCCTTTTCAAGATTAG-GAACCAAAAACACATTCCTC-TCATTAGGATACATGACATT
* * * * * *
564282 GACGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGCCTC
194 GATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTC
*
564347 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGCCACCATAAAC
259 TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * * *
564412 ATAGTCTTCTCATAAGGATACAGGATATTAATGATTTGGTTTCGCAAGAAATGTTTTTTTCCCAT
324 ATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCCAC
* *
564477 CAATTTTTGTAAATTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTC
389 CAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTC
*
564542 ACTCATTTCATGATTAGGCACTA
454 ATTCATTTCATGATTAGGCACTA
* * * *
564565 TAAGCACATTCTCCTCATCAGCATACATGATATTGATGGTTTTATTTTGCACGGAAATCTTTTCT
1 TAAACACATTCTCCTCATCAGGATACATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* *
564630 TCGCCTTCTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCAG-AAA
66 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTC-GTAAA
* *
564694 AGTCTCC-TCTCTTTTCAAGATT-GCAAACCAAAAACACAAT-CTCTTCATTAGGATACATGACA
130 AGTCTCCATC-CTTTTCAAGATTAG-GAACCAAAAACACATTCCTC-TCATTAGGATACATGACA
* * * * * * ***
564756 TTCATGCTTTGGTGTCGCAAGAGAAGCTTTTTTTTCTAACGTTATTGATAAAATCAAAGTTAACC
192 TTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTC
* * * * * * * *
564821 TCCTAAATAAGGCAAACTTGAATACCCATACTAATACCCATTCTTTTTAGGACTAGGCACCGTAA
257 TCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAA
* * * * * * *
564886 ATATAGTTTTCTTATACGGATATAGGATATTGATGATTTGGTTTCACAAGAAATGCTTT-TTCCC
322 ACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCC
* * * * * *
564950 ATCAATTTTTGAAAATTCTAAGTTCGTCCCTCAAATGAGAGACACATGGATTCTAG
387 ACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
565006 GATCCAAAAA
Statistics
Matches: 2457, Mismatches: 314, Indels: 75
0.86 0.11 0.03
Matches are distributed among these distances:
467 1 0.00
468 99 0.04
469 5 0.00
470 302 0.12
471 6 0.00
472 200 0.08
473 225 0.09
474 121 0.05
475 879 0.36
476 610 0.25
477 9 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
TAAACACATTCTCCTCATCAGGATACATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAA
GTCTCCATCCTTTTCAAGATTAGGAACCAAAAACACATTCCTCTCATTAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTTGTCTCTT
AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
AGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTCTTCCCACCA
ATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCAT
TCATTTCATGATTAGGCACTA
Found at i:563942 original size:157 final size:155
Alignment explanation
Indices: 561856--564462 Score: 494
Period size: 158 Copynumber: 16.5 Consensus size: 155
561846 GTAAAAGTCT
* * * * *
561856 CCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCAGGATTAGGCA-CATAAACACATTCCTTTTATTAGGATACATGATATTGATGCT
** * * * * *
561921 TTGGTGTCGTGAGAGAAGCTTGTATTTCCACCATTATTGATGGAATCAAAGTAGTCTCTTAAATA
65 TTGGTGTCGCAAGAAAAGCTT-TCTTTCCACCGTTATTGAT-AAATCAAAGTTGTCTCTTAAATA
* *
561986 GGACAAACATGAATACTCATACTAATCC
128 AGACAAACATGAGTACTCATACTAATCC
* * * * * *
562014 CCATTCTTTTCGGGATTAGGCACCATAAACATAGT-CTTCTTATGCA-AATATATGATATTGATG
1 CCATTCTTTTCAGGATTAGGCA-CATAAACACATTCCTT-TTAT-TAGGATACATGATATTGATG
* * * * * * * * *
562077 CTTTGGTTTTGCAAGATACGCTTTCGTCCCACCAATT-TGTG-TAAATTCTAAGTTCGTGC-CTC
63 CTTTGGTGTCGCAAGAAAAGCTTTCTTTCCACC-GTTAT-TGATAAA-TCAAAGTT-GT-CTCTT
* * * *
562139 AAATGAGACAAACAT-AG-ATTC-TAGTAAGGATCT
123 AAATAAGACAAACATGAGTACTCATACT-A--ATCC
** * * * * *
562172 TTATT-TATTTCAAGATTAGGCACTATAAACACATT-CTCCTCATCAGGATGCATGATATTGATG
1 CCATTCT-TTTCAGGATTAGGCAC-ATAAACACATTCCT-TTTATTAGGATACATGATATTGATG
* ** * * * * * * * * *
562235 GTTTTCTTTTGCATGGAAATCTTTTCTTT--GCC-TTATTTTCCATAAAATCATAGTT-TGCACT
63 CTTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCGTTA--TT-GAT-AAATCAAAGTTGT-CTC-
** * * * *
562296 TTAAATGAA-ACATGCATTGA-TTCTCGTAAC-AGTCT
121 TTAAAT-AAGACAAACA-TGAGTACTCAT-ACTAATCC
* * * * * * * * * *
562331 CCATCCATTTCAAGATTAGGAACCA-AAAGCACATTCCTCTCATTAGGATACAAGACAATGTTGC
1 CCATTCTTTTCAGGATTAGGCA-CATAAA-CACATTCCTTTTATTAGGATACATGATATTGATGC
* * * *
562395 TTTGGTGTTGCAAGAGAAGCTTGTCTTTCCACCTTTATTGATGGAATCAAAGTTTGTCTCTTAAA
64 TTTGGTGTCGCAAGAAAAGCTT-TCTTTCCACCGTTATTGAT-AAATCAAAG-TTGTCTCTTAAA
* * *
562460 TAGGACAAACAGGAATACTCATACTAATCC
126 TAAGACAAACATGAGTACTCATACTAATCC
* * * * * * * *
562490 ACATTCTTTTTCA-GATTAGGCACCAAAAACATAGT-ATTCTCATAAGGATACATGATATTAATG
1 CCATTC-TTTTCAGGATTAGGCA-CATAAACACATTCCTT-TTATTAGGATACATGATATTGATG
* * * * * * * *
562553 CTTTGGTTTCGCAAGAAACGCTTTCTTCCCCCCAACTT-TTG-TAAAGT-ATCACTTCAT-TCCT
63 CTTTGGTGTCGCAAGAAAAGCTTTCTTTCCACC--GTTATTGATAAA-TCA-AAGTT-GTCT-CT
* * * * *
562614 CAAATTAGACAAACATG-GATTCTAGCA-AC-GATCT
122 TAAATAAGACAAACATGAG-TACT--CATACTAATCC
* * * * * *
562648 TCATTCATTTC-GTGATTAGGCACTATAAACACATT-CTCCTCATTAGGATAAATGGT-TTGATG
1 CCATTCTTTTCAG-GATTAGGCAC-ATAAACACATTCCT-TTTATTAGGATACATGATATTGATG
* ** * * * * **** * * *
562710 GTTTTCTTTTGCATCG-AAATCTTTTCTTTGCCTTATTCTCTTTA-AAATAAAAGTTTGTACT-T
63 CTTTGGTGTCGCA-AGAAAAGC-TTTCTTT-CCACCGT-TATTGATAAATCAAAG-TTGT-CTCT
* ** * * * *
562772 TAAATGAGACATTCATTGA-TTCTCGTA-AAAGTCT
122 TAAATAAGACAAACA-TGAGTACTCATACTAA-TCC
* * * * * * * * * *
562806 CCACTCTTTCCAAGAATAGG-ATCCAAAAACACTTTCCCTTCATTAGGATACATGACATTGGTGC
1 CCATTCTTTTCAGGATTAGGCA--CATAAACACATTCCTTTTATTAGGATACATGATATTGATGC
* * * * * * *
562870 TTTGGTGTTGCGAGAGAAGCTTTTCTTCCCACCGTGAATGATGAAATCAAAGTTTATCTCTTAAA
64 TTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCGTTATTGAT-AAATCAAAG-TTGTCTCTTAAA
* *
562935 TAAGACAAACATGAATGCTCATACTAATCC
126 TAAGACAAACATGAGTACTCATACTAATCC
* * * * * *
562965 CCATTCTTTTCAGGATTAGGCACCATAAACATAGT-CTTATCATAAGGATACAGGATATTGATGA
1 CCATTCTTTTCAGGATTAGGCA-CATAAACACATTCCTT-TTATTAGGATACATGATATTGATGC
* * ** * *
563029 TTTGGTTTCGCAAGAAATGCTTT-TTTCCCATCAATT-TT-AGTAAATTCTAAGTTCGTGC-CTC
64 TTTGGTGTCGCAAGAAAAGCTTTCTTT-CCA-CCGTTATTGA-TAAA-TCAAAGTT-GT-CTCTT
* * * * *** *
563090 AAATGAGACAAACATCAATTCT-AGTAAGGATCT
123 AAATAAGACAAACATGAGTACTCA-TACTAATCC
* * ** * * ** * * *
563123 TCATTCATTTCTTGACTAGGCACTATAAACACATT-CTCCTCGTCAGGATGCATGATATTGATGG
1 CCATTCTTTTCAGGATTAGGCAC-ATAAACACATTCCT-TTTATTAGGATACATGATATTGATGC
** * * * * * * *
563187 TTTTCTTTTGCATGAAAATCTTTTCTTT--GCC-TTATTTTCCATAAAATCAAAG-TGTGCACTT
64 TTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCGTTA--TT-GAT-AAATCAAAGTTGT-CTC-T
* ** * ** * *
563248 TAAATGAGACATGCATTGA-TTCTTGTGAC-AGTCT
122 TAAATAAGACAAACA-TGAGTACTCAT-ACTAATCC
* ** * * * * *
563282 CCATTCTTTTCAAGATTAGAAACCAAAAACACATTCCTTTCATTAGGATACATGACATTAAAGCT
1 CCATTCTTTTCAGGATTAGGCA-CATAAACACATTCCTTTTATTAGGATACATGATATTGATGCT
* * * * * * *
563347 TTGGTGTTGCAAGAGAAGCTTGTATTTTCGCCGTTACTGATAGAATCAAAGTTTTCTCTTAAATA
65 TTGGTGTCGCAAGAAAAGCTT-TCTTTCCACCGTTATTGATA-AATCAAAGTTGTCTCTTAAATA
* *
563412 AGACAAACATGAATACTCATACTAAACC
128 AGACAAACATGAGTACTCATACTAATCC
* ** * *
563440 CCATTCTTTTCTGGATTAGGCATCATAAACTTAGTCTTTTTA-TACGGATACATGATATTGATGC
1 CCATTCTTTTCAGGATTAGGCA-CATAAACACATTCCTTTTATTA-GGATACATGATATTGATGC
* * * * * * *
563504 TTCGGTGTCGCAAGATACGCTTT-TGTCCCACCAATT-TGTG-TAAATTCTAAGTTTGT-TCCTC
64 TTTGGTGTCGCAAGAAAAGCTTTCT-TTCCACC-GTTAT-TGATAAA-TCAAAG-TTGTCT-CTT
* * * *
563565 AAATGAGACAAACATG-G-ATTC-TAGTAAGGATCT
123 AAATAAGACAAACATGAGTACTCATACT-A--ATCC
* * * * * * * *
563598 TCATTCATTTCATGATTAGGCACTATAAACAC-TCTCC--TCATCAGGATGCATAATATTGATGG
1 CCATTCTTTTCAGGATTAGGCAC-ATAAACACAT-TCCTTTTATTAGGATACATGATATTGATGC
** * * * * * * * * *
563660 TTTTCTTTTGCATGGAAATCTTTTCTTT--GCC-TTATTTTCCATAATATCAAAGTT-TCCACAA
64 TTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCGTTA--TT-GATAA-ATCAAAGTTGT-CTC-T
* ** * *
563721 TAAATGAGACATGCATTGA-TTCTCATAAC-AGTCC
122 TAAATAAGACAAACA-TGAGTACTCAT-ACTAATCC
* * * *
563755 CCATTCTTTTCAAGATTAGGAACGAAAAACACATTCCTTTTATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCAGGATTAGGCAC-ATAAACACATTCCTTTTATTAGGATACATGATATTGATGCT
563820 TTGGTGTCGCAAGAAAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TGTCTCTTAAATA
65 TTGGTGTCGCAAGAAAAGCTT-TCTTTCCACCGTTATTGATA-AATCAAAGTTGTCTCTTAAATA
563884 AGACAAACATGAGTACTCATACTAATCC
128 AGACAAACATGAGTACTCATACTAATCC
* * * * *
563912 CCATTCTTTTTAGGATTAGGCAGCTTAAACATAGTT--TTCTTATAAGGATACATGATAATGATG
1 CCATTCTTTTCAGGATTAGGCA-CATAAACACA-TTCCTT-TTATTAGGATACATGATATTGATG
* * * * * * * * *
563975 CTTTGGTTTCACAAGATATGCTTTCTTCCCACCAATT-TGTG-TAAATTATGAGTTCGT-TGCTC
63 CTTTGGTGTCGCAAGAAAAGCTTTCTTTCCACC-GTTAT-TGATAAATCA-AAGTT-GTCT-CTT
* * * * * *** *
564037 AAATGAGATAAACATGGATTCCT-GTAAGGATCT
123 AAATAAGACAAACAT-GAGTACTCATACTAATCC
** * * * *** *
564070 TTATTCGTCTCATGATTAGGCACTATAAACACATTCTCCGCT-TTAGGATAAATGATATTGATGG
1 CCATTCTTTTCAGGATTAGGCAC-ATAAACACATTC-CTTTTATTAGGATACATGATATTGAT-G
* ** * * * * **
564134 TTTTCCT-TTGCATGAAAATCTTTTCTTT--GCC-TTATTTTCCTTAAAATCAAAGTTTGTGCT-
63 CTTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCGTTA--TT-GAT-AAATCAAAG-TTGT-CTC
* *** * *
564194 TTAAATGAGACGTGCATTGA-TTCTCGTA--AA---
121 TTAAATAAGACAAACA-TGAGTACTCATACTAATCC
** * * * * * * * * *
564224 -GGTTCTTTTCAAGATT-GTGAACCAAAAATACATTCCCTTCATTAGGATATATGACATTGACGC
1 CCATTCTTTTCAGGATTAG-GCA-CATAAACACATTCCTTTTATTAGGATACATGATATTGATGC
* *
564287 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGCCTCTTAAA
64 TTTGGTGTCGCAAGAAAAGC-TTTCTTTCCACCGTTATTGAT-AAATCAAAG-TTGTCTCTTAAA
*
564352 TAAGACAAACATGAATACTCATACTAATCC
126 TAAGACAAACATGAGTACTCATACTAATCC
* * * * * * * *
564382 CCATTCTTTTCAGGATTAGCCACCATAAACATAGT-CTTCTCATAAGGATACAGGATATTAATGA
1 CCATTCTTTTCAGGATTAGGCA-CATAAACACATTCCTT-TTATTAGGATACATGATATTGATGC
*
564446 TTTGGTTTCGCAAGAAA
64 TTTGGTGTCGCAAGAAA
564463 TGTTTTTTTC
Statistics
Matches: 1737, Mismatches: 510, Indels: 403
0.66 0.19 0.15
Matches are distributed among these distances:
152 13 0.01
153 93 0.05
154 3 0.00
155 23 0.01
156 71 0.04
157 254 0.15
158 638 0.37
159 558 0.32
160 59 0.03
161 14 0.01
162 10 0.01
163 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (155 bp):
CCATTCTTTTCAGGATTAGGCACATAAACACATTCCTTTTATTAGGATACATGATATTGATGCTT
TGGTGTCGCAAGAAAAGCTTTCTTTCCACCGTTATTGATAAATCAAAGTTGTCTCTTAAATAAGA
CAAACATGAGTACTCATACTAATCC
Found at i:564461 original size:159 final size:159
Alignment explanation
Indices: 561856--564945 Score: 1024
Period size: 159 Copynumber: 19.6 Consensus size: 159
561846 GTAAAAGTCT
* * * * *
561856 CCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTT-TCATTAGGATACATGACATTGATGC
1 CCATTCTTTTCAGGATTAGGCACCATAAACACATT-CTTCTCATAAGGATACATGATATTGATGC
* ** * * * * ** * *
561920 TTTGGTGTCGTGAGAGAAGCTTGTATTTCCACCATTATTGATGGAATCAAAG-TAGTCTCTTAAA
65 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTATTGATAAAATCAAAGTTTGCCTCTTAAA
*
561984 T-AGGACAAACATGAATACTCATACTAATCC
130 TGA-GACAAACATGAATTCTCATACTAATCC
* * * * *
562014 CCATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTTATGCAA--ATATATGATATTGATG
1 CCATTCTTTTCAGGATTAGGCACCATAAACACATTCTTCTCAT--AAGGATACATGATATTGATG
* * * * * * * *
562077 CTTTGGTTTTGCAAGATACGC-TTTCGTCCCACCAATT-TGTG-TAAATTCTAAGTTCGTGCCTC
64 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-GTTAT-TGATAAAATCAAAGTT--TGCCTC
*** *
562139 --AAATGAGACAAACAT-AGATTCT-AGTAAGGATCT
125 TTAAATGAGACAAACATGA-ATTCTCA-TACTAATCC
** * * * * * *
562172 TTATT-TATTTCAAGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGG
1 CCATTCT-TTTCAGGATTAGGCACCATAAACACATTCTTCTCATAAGGATACATGATATTGATGC
** * * * * * * *
562236 TTTTCTTTTGCATGGAAATCTTTTCTTT--GCC-TTATTTTCCATAAAATCATAGTTTGCACT-T
65 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTA--TT-GATAAAATCAAAGTTTGC-CTCT
* ** * * *
562297 TAAATGAAACATGCATTG-ATTCTCGTAAC-AGTCT
126 TAAATGAGACAAACA-TGAATTCTCAT-ACTAATCC
* * * * * * * * * *
562331 CCATCCATTTCAAGATTAGGAACCA-AAAGCACATTCCTCTCATTAGGATACAAGACAATGTTGC
1 CCATTCTTTTCAGGATTAGGCACCATAAA-CACATTCTTCTCATAAGGATACATGATATTGATGC
* * * ** *
562395 TTTGGTGTT-GCAAGAGAAGCTTGTCTTTCCACCTTTATTGATGGAATCAAAGTTTGTCTCTTAA
65 TTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCGTTATTGATAAAATCAAAGTTTGCCTCTTAA
* *
562459 AT-AGGACAAACAGGAATACTCATACTAATCC
129 ATGA-GACAAACATGAATTCTCATACTAATCC
* * * * * *
562490 ACATTCTTTTTCA-GATTAGGCACCAAAAACATAGTATTCTCATAAGGATACATGATATTAATGC
1 CCATTC-TTTTCAGGATTAGGCACCATAAACACATTCTTCTCATAAGGATACATGATATTGATGC
* * * * * *
562554 TTTGGTTTCGCAAGAAACGC-TTTCTTCCCCCCAACTT-TTG-TAAAGTATC--ACTTCATTCCT
65 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC--GTTATTGATAAA--ATCAAAGTT--TGCCT
* * * *
562614 C--AAATTAGACAAACATGGATTCTAGCA-AC-GATCT
124 CTTAAATGAGACAAACATGAATTCT--CATACTAATCC
* * * * * * * *
562648 TCATTCATTTC-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGGT-TTGATGG
1 CCATTCTTTTCAG-GATTAGGCACCATAAACACATTCTTCTCATAAGGATACATGATATTGATGC
** * * * * ** * *
562711 TTTTCTTTTGCATCG-AAATCTTTTCTTT--GCC-TTATTCTCTTTAAAATAAAAGTTTGTACT-
65 TTTGGTTTCGCA-AGAAAAGCTTTTCTTTCCACCGTTA-T-T-GATAAAATCAAAGTTTG-CCTC
** * * *
562771 TTAAATGAGACATTCATTG-ATTCTCGTA-AAAGTCT
125 TTAAATGAGACAAACA-TGAATTCTCATACTAA-TCC
* * * * * * * * * *
562806 CCACTCTTTCCAAGAATAGG-ATCCAAAAACACTTTC-CCTTCATTAGGATACATGACATTGGTG
1 CCATTCTTTTCAGGATTAGGCA-CCATAAACACATTCTTC-TCATAAGGATACATGATATTGATG
* * * * * * **
562869 CTTTGGTGTT-GCGAGAGAAGCTTTTCTTCCCACCGTGAATGATGAAATCAAAGTTTATCTCTTA
64 CTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCGTTATTGATAAAATCAAAGTTTGCCTCTTA
* *
562933 AATAAGACAAACATGAATGCTCATACTAATCC
128 AATGAGACAAACATGAATTCTCATACTAATCC
* * * * *
562965 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTATCATAAGGATACAGGATATTGATGAT
1 CCATTCTTTTCAGGATTAGGCACCATAAACACATTCTTCTCATAAGGATACATGATATTGATGCT
* * ** * *
563030 TTGGTTTCGCAAGAAATGCTTTT-TTCCCATCAATT-TT-AGTAAATTCTAAGTTCGTGCCTC--
66 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCA-CCGTTATTGA-TAAAATCAAAGTT--TGCCTCTT
* *** *
563090 AAATGAGACAAACATCAATTCT-AGTAAGGATCT
127 AAATGAGACAAACATGAATTCTCA-TACTAATCC
* * ** * * * * * * *
563123 TCATTCATTTCTTGACTAGGCACTATAAACACATTCTCCTCGTCAGGATGCATGATATTGATGGT
1 CCATTCTTTTCAGGATTAGGCACCATAAACACATTCTTCTCATAAGGATACATGATATTGATGCT
** * * * * * *
563188 TTTCTTTTGCATGAAAATCTTTTCTTT--GCC-TTATTTTCCATAAAATCAAAGTGTGCACT-TT
66 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTA--TT-GATAAAATCAAAGTTTGC-CTCTT
** ** * *
563249 AAATGAGACATGCATTG-ATTCTTGTGAC-AGTCT
127 AAATGAGACAAACA-TGAATTCTCAT-ACTAATCC
* ** * * * * *
563282 CCATTCTTTTCAAGATTAGAAACCAAAAACACATTCCTT-TCATTAGGATACATGACATTAAAGC
1 CCATTCTTTTCAGGATTAGGCACCATAAACACATT-CTTCTCATAAGGATACATGATATTGATGC
* * * * * * * *
563346 TTTGGTGTT-GCAAGAGAAGCTTGTATTTTCGCCGTTACTGATAGAATCAAAGTTT-TCTCTTAA
65 TTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCGTTATTGATAAAATCAAAGTTTGCCTCTTAA
* * *
563409 ATAAGACAAACATGAATACTCATACTAAACC
129 ATGAGACAAACATGAATTCTCATACTAATCC
* * ** * * * *
563440 CCATTCTTTTCTGGATTAGGCATCATAAACTTAGTCTTTTTATACGGATACATGATATTGATGCT
1 CCATTCTTTTCAGGATTAGGCACCATAAACACATTCTTCTCATAAGGATACATGATATTGATGCT
* * * * * * * * *
563505 TCGGTGTCGCAAGATACGCTTTT-GTCCCACCAATT-TGTG-TAAATTCTAAGTTTGTTCCTC--
66 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-GTTAT-TGATAAAATCAAAGTTTG--CCTCTT
* *** *
563565 AAATGAGACAAACATGGATTCT-AGTAAGGATCT
127 AAATGAGACAAACATGAATTCTCA-TACTAATCC
* * * * * * * * *
563598 TCATTCATTTCATGATTAGGCACTATAAACAC--TCTCCTCATCAGGATGCATAATATTGATGGT
1 CCATTCTTTTCAGGATTAGGCACCATAAACACATTCTTCTCATAAGGATACATGATATTGATGCT
** * * * * * * * * *
563661 TTTCTTTTGCATGGAAATCTTTTCTTT--GCC-TTATTTTCCATAATATCAAAGTTT-CCACAAT
66 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTA--TT-GATAAAATCAAAGTTTGCCTC-TT
** *
563722 AAATGAGACATGCATTG-ATTCTCATAAC-AGTCC
127 AAATGAGACAAACA-TGAATTCTCAT-ACTAATCC
* * * * * * *
563755 CCATTCTTTTCAAGATTAGGAACGAAAAACACATTCCTT-TTATTAGGATACATGACATTGATGC
1 CCATTCTTTTCAGGATTAGGCACCATAAACACATT-CTTCTCATAAGGATACATGATATTGATGC
* * * *
563819 TTTGGTGTCGCAAGAAAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG--TGTCTCTTAAA
65 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTATTGATAAAATCAAAGTTTGCCTCTTAAA
* * *
563882 TAAGACAAACATGAGTACTCATACTAATCC
130 TGAGACAAACATGAATTCTCATACTAATCC
* * * * * *
563912 CCATTCTTTTTAGGATTAGGCAGCTTAAACATAGTT-TTCTTATAAGGATACATGATAATGATGC
1 CCATTCTTTTCAGGATTAGGCACCATAAACACA-TTCTTCTCATAAGGATACATGATATTGATGC
* * * * * * * * *
563976 TTTGGTTTCACAAGATATGC-TTTCTTCCCACCAATT-TGTG-T-AAATTATGAGTTCG-TTGCT
65 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-GTTAT-TGATAAAATCA-AAGTTTGCCT-CT
* * * * *** *
564036 CAAATGAGATAAACATGGATTC-CTGTAAGGATCT
126 TAAATGAGACAAACATGAATTCTC-ATACTAATCC
** * * * * * * * * * *
564070 TTATTCGTCTCATGATTAGGCACTATAAACACATTCTCCGCTTTAGGATAAATGATATTGATGGT
1 CCATTCTTTTCAGGATTAGGCACCATAAACACATTCTTCTCATAAGGATACATGATATTGAT-GC
** * * * ** *
564135 TTTCCTTT-GCATGAAAATCTTTTCTTT--GCC-TTATTTTCCTTAAAATCAAAGTTTGTGCT-T
65 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTA--TT-GATAAAATCAAAGTTTG-CCTCT
*** *
564195 TAAATGAGACGTGCATTG-ATTCTCGTA--AA---
126 TAAATGAGACAAACA-TGAATTCTCATACTAATCC
** * * * * * * * * *
564224 -GGTTCTTTTCAAGATT-GTGAACCAAAAATACATTC-CCTTCATTAGGATATATGACATTGACG
1 CCATTCTTTTCAGGATTAG-GCACCATAAACACATTCTTC-TCATAAGGATACATGATATTGATG
* *
564286 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGCCTCTTAA
64 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTATTGATAAAATCAAAGTTTGCCTCTTAA
* *
564351 ATAAGACAAACATGAATACTCATACTAATCC
129 ATGAGACAAACATGAATTCTCATACTAATCC
* * * * * *
564382 CCATTCTTTTCAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACAGGATATTAATGAT
1 CCATTCTTTTCAGGATTAGGCACCATAAACACATTCTTCTCATAAGGATACATGATATTGATGCT
* ** * * *
564447 TTGGTTTCGCAAGAAATG-TTTT-TTTCCCATCAATTTTTG-TAAATTCTAAGTTTGTGCCTC--
66 TTGGTTTCGCAAGAAAAGCTTTTCTTT-CCA-CCGTTATTGATAAAATCAAAG-TT-TGCCTCTT
* *** *
564507 AAATGAGACAAACATGGATTCT-AGTAAGGATCT
127 AAATGAGACAAACATGAATTCTCA-TACTAATCC
* * * * * * * * * *
564540 TCACTCATTTCATGATTAGGCACTATAAGCACATTCTCCTCATCAGCATACATGATATTGATGGT
1 CCATTCTTTTCAGGATTAGGCACCATAAACACATTCTTCTCATAAGGATACATGATATTGATGCT
** * * * * * * * ** *
564605 TTTATTTTGCACGGAAATCTTTTC-TT-CGCCTTCTTTTCCTTAAAATCAAAGTTTGTACT-TTA
66 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGT-TATT-GATAAAATCAAAGTTTG-CCTCTTA
** * * *
564667 AATGAGACATGCATTG-ATTCTCAGA-AAAGTCT
128 AATGAGACAAACA-TGAATTCTCATACTAA-TCC
* * * * * *
564699 CC-TCTCTTTTCAAGATT--GCAAACCAAAAACACAATC-TCTTCATTAGGATACATGACATTCA
1 CCAT-TCTTTTCAGGATTAGGC--ACCATAAACACATTCTTC-TCATAAGGATACATGATATTGA
* * * * * ** *
564760 TGCTTTGGTGTCGCAAGAGAAGCTTTTTTTTCTAACGTTATTGATAAAATCAAAGTTAACCTCCT
62 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTATTGATAAAATCAAAGTTTGCCTCTT
* * * * * *
564825 AAATAAGGCAAACTTGAATACCCATACTAATAC
127 AAATGAGACAAACATGAATTCTCATACTAATCC
* * * * * * * * * *
564858 CCATTCTTTTTAGGACTAGGCACCGTAAATATAGTT-TTCTTATACGGATATAGGATATTGATGA
1 CCATTCTTTTCAGGATTAGGCACCATAAACACA-TTCTTCTCATAAGGATACATGATATTGATGC
* *
564922 TTTGGTTTCACAAGAAATGCTTTT
65 TTTGGTTTCGCAAGAAAAGCTTTT
564946 TCCCATCAAT
Statistics
Matches: 2077, Mismatches: 651, Indels: 407
0.66 0.21 0.13
Matches are distributed among these distances:
152 13 0.01
153 97 0.05
154 5 0.00
155 17 0.01
156 71 0.03
157 256 0.12
158 750 0.36
159 758 0.36
160 85 0.04
161 14 0.01
162 11 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (159 bp):
CCATTCTTTTCAGGATTAGGCACCATAAACACATTCTTCTCATAAGGATACATGATATTGATGCT
TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCGTTATTGATAAAATCAAAGTTTGCCTCTTAAAT
GAGACAAACATGAATTCTCATACTAATCC
Found at i:565732 original size:764 final size:764
Alignment explanation
Indices: 564245--565769 Score: 2218
Period size: 764 Copynumber: 2.0 Consensus size: 764
564235 AGATTGTGAA
* * *
564245 CCAAAAATACATTCCCTTCATTAGGATATATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTT
1 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGCTTT
* *
564310 TCTTTCCAACGTTATTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATACTCATA
66 TCTTTCCAACGTTAATGATAAAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATACTCATA
* *
564375 CTAATCCCCATTCTTTTCAGGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACAGGATAT
131 CTAATCCCCATTCTTTTCAGGATTAGCCACCATAAACATAGTCTTATCATAAAGATACAGGATAT
* * * * *
564440 TAATGATTTGGTTTCGCAAGAAATGTTTTTTTCCCATCAATTTTTGTAAATTCTAAGTTTGTGCC
196 TAATGATTTGGTTTCACAAGAAACGCTTTTTTCCCATCAATTTTAGTAAATTCTAAGTTCGTGCC
* *
564505 TCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCACTCATTTCATGATTAGGCACTATAAGC
261 TCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCACTCATTTCATGATTAGGCACTATAAAC
564570 ACATTCTCCTCATCAGCATACATGATATTGATGGTTTTATTTTGCACGGAAATCTTTTCTTCGCC
326 ACATTCTCCTCATCAGCATACATGATATTGATGGTTTTATTTTGCACGGAAATCTTTTCTTCGCC
* * * *
564635 TTCTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCAGAAAAGTCTC
391 CTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCAGAAAAGTCTC
564700 CTCTCTTTTCAAGATTGCAAACCAAAAACACAATCTCTTCATTAGGATACATGACATTCATGCTT
456 CTCTCTTTTCAAGATTGCAAACCAAAAACACAATCTCTTCATTAGGATACATGACATTCATGCTT
* * *
564765 TGGTGTCGCAAGAGAAGCTTTTTTTTCTAACGTTATTGATAAAATCAAAGTTAACCTCCTAAATA
521 TGGTGTCGCAAGAGAAGCTTGTCTTTCCAACGTTATTGATAAAATCAAAGTTAACCTCCTAAATA
* ** * *
564830 AGGCAAACTTGAATACCCATACTAATACCCATTCTTTTTAGGACTAGGCACCGTAAATATAGTTT
586 AGACAAACAAGAATACCCATACTAATACCCATTCTTTTTAGGACTAGGCACCATAAATATAGTCT
* * * *
564895 TCTTATACGGATATAGGATATTGATGATTTGGTTTCACAAGAAATGCTTTTTCCCATCAATTTTT
651 TCTTATACGGATACAGGATATTGATGATTTGGTTTCACAAGAAACGCTTTTTCCCACCAATTTGT
* *
564960 GAAAATTCTAAGTTCGTCCCTCAAATGAGAGACACATGGATTCTAGGAT
716 GAAAATTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTAGGAT
* ** * * *
565009 CCAAAAACACTTTCCCTTCATTAGGATACATGACATTGGTACTTTGGTGTTGCGAGAGAAGCTTT
1 CCAAAAACACATTCCCTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGCTTT
* * * *
565074 TCTTTCCACCGTTAATGATAAAATCAAAGTTTATCTCTTAAATAAGATAAACATGAATGCTCATA
66 TCTTTCCAACGTTAATGATAAAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATACTCATA
* *
565139 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTATCATAAAGATATAGGATAT
131 CTAATCCCCATTCTTTTCAGGATTAGCCACCATAAACATAGTCTTATCATAAAGATACAGGATAT
*
565204 TGATGATTTGGTTTCACAAGAAACGCTTTTTTCCCATCAATTTTAGTAAATTCTAAGTTCGTGCC
196 TAATGATTTGGTTTCACAAGAAACGCTTTTTTCCCATCAATTTTAGTAAATTCTAAGTTCGTGCC
* * *
565269 TCAAGTGAGACAAATATGGATTCTAGTAAAGATCTTCATTCATTTCATGATTAGGCACTATAAAC
261 TCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCACTCATTTCATGATTAGGCACTATAAAC
* * * * * *
565334 ACATTCTCCTCGTCATG-ATGCATGATTTTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGC
326 ACATTCTCCTCATCA-GCATACATGATATTGATGGTTTTATTTTGCACGGAAATCTTTTCTTCGC
*
565398 CCTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTC-GTAATAGTC
390 CCTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCAG-AAAAGTC
* * * * * *
565462 TCCAT-TCTTTTCAAGATTAG-GAACCAAAAACACACTCTTTTCATTAGGATTCATGGCATTGAT
454 TCC-TCTCTTTTCAAGATT-GCAAACCAAAAACACAATCTCTTCATTAGGATACATGACATTCAT
* ** * *** *
565525 GCTTTGGTGTTGCAAGAGAAGCTTGTCTTTCCGCCGTTATTGATAGAATCAAAGTT-GTGTCTTA
517 GCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCAACGTTATTGATAAAATCAAAGTTAACCTCCTA
* * * *
565589 AATAAGACAAACAAGAATACTCATACTAATCCCCATTGTTTTCTA-GATTAGGCACCATAAACT-
582 AATAAGACAAACAAGAATACCCATACTAATACCCATTCTTTT-TAGGACTAGGCACCATAAA-TA
* * * * *
565652 TAGTCTTCTTATACGTATACATGATATTGATGCTTTGGTTTCGCAAGATACGCTTTTGTCCCACC
645 TAGTCTTCTTATACGGATACAGGATATTGATGATTTGGTTTCACAAGAAACGCTTTT-TCCCACC
* *
565717 AATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAG
709 AATTTGTGAAAATTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTAG
565770 TAAGGATCTT
Statistics
Matches: 674, Mismatches: 80, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
763 104 0.15
764 567 0.84
765 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (764 bp):
CCAAAAACACATTCCCTTCATTAGGATACATGACATTGACACTTTGGTGTCGCAAGAAAAGCTTT
TCTTTCCAACGTTAATGATAAAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATACTCATA
CTAATCCCCATTCTTTTCAGGATTAGCCACCATAAACATAGTCTTATCATAAAGATACAGGATAT
TAATGATTTGGTTTCACAAGAAACGCTTTTTTCCCATCAATTTTAGTAAATTCTAAGTTCGTGCC
TCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCACTCATTTCATGATTAGGCACTATAAAC
ACATTCTCCTCATCAGCATACATGATATTGATGGTTTTATTTTGCACGGAAATCTTTTCTTCGCC
CTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCAGAAAAGTCTC
CTCTCTTTTCAAGATTGCAAACCAAAAACACAATCTCTTCATTAGGATACATGACATTCATGCTT
TGGTGTCGCAAGAGAAGCTTGTCTTTCCAACGTTATTGATAAAATCAAAGTTAACCTCCTAAATA
AGACAAACAAGAATACCCATACTAATACCCATTCTTTTTAGGACTAGGCACCATAAATATAGTCT
TCTTATACGGATACAGGATATTGATGATTTGGTTTCACAAGAAACGCTTTTTCCCACCAATTTGT
GAAAATTCTAAGTTCGTCCCTCAAATGAGACAAACATGGATTCTAGGAT
Found at i:565782 original size:475 final size:474
Alignment explanation
Indices: 565003--588997 Score: 30173
Period size: 475 Copynumber: 50.7 Consensus size: 474
564993 ACATGGATTC
* * * * * * *
565003 TAGGATCCAAAAACACTTTCCCTTCATTAGGATACATGACATTGGTACTTTGGTGTTGCGAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * * * * *
565068 AGCTTTTCTTTCCACCGTTAATGATAAAATCAAAGTTTATCTCTTAAATAAGATAAACATGAATG
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAATA
* * ** *
565133 CTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTATCATAAAGATAT
130 CTCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGATAC
* * * * *
565197 AGGATATTGATGATTTGGTTTCACAAGAAACGCTTTTTTCCCATCAATTT-TAGTAAATTCTAAG
194 ATGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGT-GTAAATTCTAAG
* * *
565261 TTCGTGCCTCAAGTGAGACAAATATGGATTCTAGTAAAGATCTTCATTCATTTCATGATTAGGCA
257 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCA
* * *
565326 CTATAAACACATTCTCCTCGTCATGATGCATGATTTTGATGGTTTTCTTTTGCATGGAAATCTTT
322 CTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTT
*
565391 TCTTTGCCCTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTA
387 TCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTA
*
565456 ATAGTCTCCATTCTTTTCAAGAT
452 AAAGTCTCCATTCTTTTCAAGAT
* * * * *
565479 TAGGAACCAAAAACACACTCTTTTCATTAGGATTCATGGCATTGATGCTTTGGTGTTGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * *
565544 AGCTTGTCTTTCCGCCGTTATTGATAGAATCAAAGTTGTGTCTTAAATAAGACAAACAAGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * *
565609 TCATACTAATCCCCATTGTTTTCTAGATTAGGCACCATAAACTTAGTCTTCTTATACGTATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
565674 GATATTGATGCTTTGGTTTCGCAAGATACGCTTTTGTCCCACCAATTTGTGTAAATTCTAAGTTC
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTTT-TCCCACCAATTTGTGTAAATTCTAAGTTC
565739 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTA
260 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTA
565804 TAAACAC--TCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
325 TAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* * * * *
565867 TTGCCTTATTTTCCATAAAATCAAAGTTTTCACATTAAATGAGACATGCGTTAATTCTCGTAATA
390 TTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAA
*
565932 GTCCCCATTCTTTTCAAGAT
455 GTCTCCATTCTTTTCAAGAT
** * * *
565952 TAGGAATGAAAAACACATTCCTTTCATTAGGATAAATGACATTGATGCTTTAGTGTCGTAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* *
566017 AGCTTGTCTTTCCACCGCTATTGATAGAATCAAAGTTGTCTTTTAAATAAGACAAACATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
*
566082 TCATACTAATCCCCATTCTTTT-TCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATAC
131 TCATACTAATCCCCATTCTTTTCT-A-GATTAGGCACCATAAACATAGTCTTCTTATACGGATAC
* * * *
566146 ATGATAATGATGCTTTGGTTTCGCAAGATACACTTTTTTCCCACCAATTTGTGTAAA-GCATGAG
194 ATGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTC-TAAG
* * * * * *
566210 TTCATTG-CTCAAATGAGACAAGCAT-GAGTTCATTTCGCAAGACACATCTTCATTCATTTCGTG
257 TTC-GTGCCTCAAATGAGACAAACATGGA-TTC---TAGTAAG---GATCTTCATTCATTTCATG
* ** *
566273 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGA
314 ATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGG
* * * * *
566338 AAATCTTTTCCTTGCCTTATTTTCCTTGAAATCAAACTTTGTACTTTAAATGAGACATGCATTGA
379 AAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGA
*
566403 TTCTCGCAAAAGTCTCCATTCTTTTCAAGAT
444 TTCTCGTAAAAGTCTCCATTCTTTTCAAGAT
*
566434 T-GTGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAG
1 TAG-GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAG
* * * *
566498 AAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAT
65 AAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAAT
** *
566563 ACTCATACTAATCCCCATTCTTTT-TAGGATTAGGCACCATAAACATAGTCTTCCCATAAGGATA
129 ACTCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGATA
* * * * * *
566627 CAGGATATTAATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCATCAATTTTTGTAAATTCTAAG
193 CATGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTCTAAG
*
566692 TTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCA
257 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCA
* * *
566757 CTATAAACACGTTCTCCTCATGAAGATGCATGATATTGATGGTTTT-TTTTGCAT-GAAAGTCTT
322 CTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAA-TCTT
* * * * * *
566820 TTTTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGCGACATGCATTCATTCTTGT
386 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
* *
566885 AAAAGTCTCCATTATTTTTAAGAT
451 AAAAGTCTCCATTCTTTTCAAGAT
* * * *
566909 TAGGAACCAAAAACACATTCCCTTCATTAGGGA-ACATGACAATGATGCTTTGTTGTCGCAAAAG
1 TAGGAACCAAAAACACATTCCTTTCATTA-GGATACATGACATTGATGCTTTGGTGTCGCAAGAG
* * * * * *
566973 AAGCCTGTCTTTCCATCTTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACCTTAAT
65 AAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAAT
** * * * * *
567038 ACTCATACTAATCGACATTCTTTTCTGGATTGGGCACCATAAACATAGTTTTCTTATAAGGATAA
129 ACTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATAC
* * * * * *
567103 ATGATATTGATGCTTTGGTTTTGCTAGAAATGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
194 ATGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGT
* * * * * **
567168 TTGTGCCTCAAATGAGACAAACAGGGATTCTGGCAAAATGATCTTCATTCATTTTGTGATTAGGC
258 TCGTGCCTCAAATGAGACAAACATGGATTCTAG--TAAGGATCTTCATTCATTTCATGATTAGGC
* * * ** ** * * * *
567233 ACTATAAACACATTCTTCTCATTAGCATAAATGATATTGACAGTTTTCATTCGCACGAAAATCTT
321 ACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTT
* * * * * * * * * *
567298 TTCTTTTCCCTATTTTACTTAAAATCAAAGTTTGTC-CCTTCAAT-AGGGCAAGCATTGACTCTT
386 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTG-CACTTTAAATGA-GACATGCATTGATTCTC
* ** * *
567361 GTAATAGTCTCTTTTTTTTTCAAAAT
449 GTAAAAGTCTCCATTCTTTTCAAGAT
* * * * *
567387 TAAGAACCAAAAACACATTCCCTTCATTAAGATACATGACATTGATGCCTTGGTGTCACAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * * * * * *
567452 AGCTTTTCTTTCTATCGATATTGATAAAATCAAAGTTTGTCTCTTAAGTAAGACAAACGTGAATA
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAATA
* * * *
567517 CTCATACAAATCCCCATTCTTTTC-AGTATTAGGCACCATAAACATAGTCTTCTCAGAAC-AATA
130 CTCATACTAATCCCCATTCTTTTCTAG-ATTAGGCACCATAAACATAGTCTTCTTA-TACGGATA
* * * ** * *
567580 CATGATATTGATGCTTTGGTTTCACAAGA-AGTGCTTTCTTCCCACCAATTTTTGTAACGTATGA
193 CATGATATTGATGCTTTGGTTTCGCAAGATA-CGCTTT-TTCCCACCAATTTGTGTAAATTCTAA
* **
567644 GTTCAAT-CCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGG
256 GTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGG
* * **
567708 CACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGGTTTT-TTTTGCATGGAAATCT
320 CACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCT
* * * * *
567772 TTTCCTTGCCTTATTTTCCAAAAAATCAAAGATTGCACTTTAAATGAGACATGCACTGATTCTCA
385 TTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCG
567837 TAAAAGTCTCCATTCTTTTCAAGAT
450 TAAAAGTCTCCATTCTTTTCAAGAT
* * * * * *
567862 TAGGAACCAAAAACATATTCCTTTCATTGGGATACGTGGCAATGTTGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* *
567927 AGCTTGTCTTTCCACCGTTACTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAATA
* * * * *
567992 CTTATACTAATCCACATTCTTTTCAAAATTAGGCACCATAAACATAGTCTTCTTATACAGATACA
130 CTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
* * * *
568057 TGATATTGATACTTTGGTTTTGCAAGATACGCTTTCTTCCCACCATTTTTTGTAAATTCTAAGTT
195 TGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTT
568122 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
259 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
* * *
568187 ATAAATACATTCTCCTCATCAGGATGCATGATATTGATGGCTTTCTATTGCATGGAAATCTTTTC
324 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
* * * *
568252 TTTGCCTTATTTTCCATAAAAACAAAGTTTGCACGTTAAATTAGACATGCATTGATTCTCGTAAC
389 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAA
568317 AGTCTCCATTCTTTTCAAGAT
454 AGTCTCCATTCTTTTCAAGAT
* * * *
568338 TAGGAACCAAAAACACATTCCTTTCATTAGTATACAAGACAATGTTGCTTTGGTGTCGCAAGAG-
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * * *
568402 AGCTTGTCTTTCCACCGTTATTGATGGAATCAAAGTTGTCTCTTAAATAAGAAAAACCTAAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * **
568467 TCATACTAATCGCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTACCTT-TAATGATAC
131 TCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCT-TCTTATACGGATAC
* * *
568530 ATGATATTGACGCTTTGGTTTCGCAAGATACGTTTTCTTCCCACCAATTTTTGTAAATTCTAAGT
194 ATGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGT
* *
568595 TC-TACCTCAAATGAGACAAACATTGATTCTAGT-AGTGATCTTCATTCATTTCATGATTAGGCA
258 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAG-GATCTTCATTCATTTCATGATTAGGCA
* * *
568658 CTATAAACACATTCTCCTCGTCAGGATGCATGATATTGATGGTTTTCTCTTGCATGGAAAACTTT
322 CTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTT
568723 TCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTA
387 TCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTA
*
568788 ACAGTCTCCATTCTTTTCAAGAT
452 AAAGTCTCCATTCTTTTCAAGAT
* *
568811 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGGTG-TGTTGGTGTCGCAAGAA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCT-TTGGTGTCGCAAGAG
* * *
568875 AAGCTTGTCTTTCCACCCTTATTGATAGAATCAAAGTTGGCTTTTAAATAAGACAAACATGAATA
65 AAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATA
* * * * * * *
568940 CTCATGCTAATCCCCATTCTTTTC-AGGATCAGGGACCACAAACATAGCCTTCTTTTAAGGATAC
130 CTCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGATAC
* *
569004 ATGATATTGATGCTTTGGTTTCACAAGATACGCTTTCTTCCCTCCAATTTGTGTAAATTCTAAGT
194 ATGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGT
* * *
569069 TCGTGCCTCAAATAAGACAAACATGGATTCTATTAAGGATCTTCACTCATTTCATGATTAGGCAC
258 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
* * *
569134 TATAAATACATTCTCCTCATCAGCATACATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
323 TATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
*
569199 CTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTAATTCTCGTAA
388 CTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAA
*
569264 CAA-TCTCCGTTCTTTTCAAGAT
453 -AAGTCTCCATTCTTTTCAAGAT
* * *
569286 TAGGAACCAAAAACACAATCCTTTTATTAGGATACATCACATTGATGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* *
569351 AGCTGGTCTTTCCCCCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
*
569416 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACAGATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
*
569481 GATATTGATGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTC
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTTC
* *
569546 GTGCCTCACATGAGACAAACATGGATTCTAGTAGGGATCTTCATTCATTTCATGATTAGGCACTA
260 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTA
* **
569611 TAAACACATTCTCCTCGTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAAAATTTTCT
325 TAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* *
569676 TTGCCTTATTTTCCATAAAATCAAAGTTTGCA---T---T------TGCATTAATTCTCGTAACA
390 TTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAA
569729 GTCTCCATTCTTTTCAAGAT
455 GTCTCCATTCTTTTCAAGAT
* * * *
569749 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGGTGCGTTGGTGTCGGAAGAAA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
*
569814 AGCTTGTCTTTCCACCGGTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * * * * *
569879 TCATGCTAATCCCCATTCTTTTC-AGGATCAGGCACCACAAACATAGCCTTCTTTTAAGGATACA
131 TCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
*
569943 TGATATTGATGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGTT
195 TGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTT
* * *
570008 CATGCCTCAAATGAGACAAACATGGATTCTTGTAAGGATCTTCATTCATTTCATGATTAAGCACT
259 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
570073 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTTGCATGGAAATCTTTT
324 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTC-TTTTGCATGGAAATCTTTT
* * * *
570138 CTTTGCCTTATTTTCCATAAAATCAAAGTTTTCACTTTAAATGAGAGACGCATTGATTCTCATAA
388 CTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAA
*
570203 CAA-CCTCCATTCTTTTCAAGAT
453 -AAGTCTCCATTCTTTTCAAGAT
* * *
570225 TAGGATCCAAAAACACATTCCTCTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * * * *
570290 AGCTTGTATTTCCTCCGTTATTGGTAGAATCAAAGTTGTCTCTTAAAGAAGACAAACTTGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * * * *
570355 CCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATTGTCTTCTTTTAAGGGTACA
131 TCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
570419 TGATATTGATGCTTTGGTTTCGCAAGATACGCTTTTTTCCCACCAATTTGTGTAAATTCTAAGTT
195 TGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTCTAAGTT
** *
570484 TATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACT
259 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
* * ***
570549 ATAAACATATTCTCCACATCAGGATGCATGATATTGATGGTTTTCTTTTGCACAAAAATCTTTTC
324 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
* * * * *
570614 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGTCACGTATTGATTCTCATAAC
389 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAA
*
570679 AGCCTCCATTCTTTTCAAGAT
454 AGTCTCCATTCTTTTCAAGAT
* * * *
570700 TAGGATCCAAAAACAAATTTCTTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * * ** **
570765 AGGTTGTCTTTCTC-CCGTTGTTGATAGAATCAAAGTCGTCTCAAAAATAAGACAAACGCGAATA
66 AGCTTGTCTTTC-CACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATA
* * * * **
570829 CTCATGCTAATCCCC-TTTTCTTTCTGGATTAGGAACCATACGCATAGTCTTCTTATACGGATAC
130 CTCATACTAATCCCCATTCT-TTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATAC
* * * * *
570893 ATGATATGGATGCTTTGGTTTCACAAGATACGCTTTCTTCCCACCAATTTGTGTAAAGTATGAGT
194 ATGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGT
* * * * * *
570958 TCATTG-CTCAAATAAGATAAACATGGATTCTTGTAGGGATCTTCATTCATTTCGTGATTAGGCA
258 TC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCA
* * * * * ** ** * *
571022 TTATAAATACATTCTCCGCTTTAGGATAAATGATATTGATGGTTTTCTTTCACATGAAAATCATT
322 CTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTT
* *
571087 TCTTTGCCTTATTTTCCTTAAAATCATAGTTTGCACTTTAAAT-ATGACATGCATTGATTCTCGT
387 TCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGA-GACATGCATTGATTCTCGT
*
571151 AAAAGTCTCCATTCTTTGCAAGAT
451 AAAAGTCTCCATTCTTTTCAAGAT
* *
571175 TAGGATCCAAAAACACATTCCTTTCATTAGGATACATCACATTGATGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
*
571240 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGGCAAACATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * *
571305 TCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAACCATAGTCTTCTTATACGAATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* * * *
571370 GATTTTGATGCTTTGCTTTTC-TAAGATACGCTTTCTTCCCATCAATTTGTGTAAATTCTAAGTT
196 GATATTGATGCTTTG-GTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTT
*
571434 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCACTCATTTCATGATTAGGCACT
259 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
* * * * * ***
571499 GTAAACACATTCACCTCATGAGCATACATGATATTGATGGTTTTCTTTTGCACAAAAATCTTTTC
324 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
*
571564 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAC
389 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAA
*
571629 AGTCTCCATTCTTTTCGAGAT
454 AGTCTCCATTCTTTTCAAGAT
* * * *
571650 TA-GAGACAAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAATAA
1 TAGGA-ACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAG
* * * *
571714 AAGCTTGTCTTTCCACCGTTAATGATAAAATCAAAGTTGTCTCTTAAATAAGGCAAACAAGAATA
65 AAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATA
* * * * *
571779 CTCATACTAATCCCTACTCTTTTCTGGATTAGGCACCATAAATATAGTCTTCATATACGGATACA
130 CTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
* * * *
571844 TGACATTGATGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGTAAAGTATGAGTT
195 TGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTT
* * * * * *
571909 CAATG-CTCAAATGAGACAAATATGGATTCTTGTAGGGATCTTCATTCATTTCGTGAGTAGGCAC
259 C-GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
* * * * **
571973 TATAAACACATTCTCCACTTTATGATAAATGATACTT-ATGGTTTTCTTTTGCATGGAAATCTTT
323 TATAAACACATTCTCCTCATCAGGATGCATGATA-TTGATGGTTTTCTTTTGCATGGAAATCTTT
* * * **
572037 TCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATCAGACATGCATTGATTCTTATA
387 TCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTA
*
572102 AAAGTCTCCACTCTTTTCAAGAT
452 AAAGTCTCCATTCTTTTCAAGAT
* * * *
572125 T-GCGAACCAAAAACACATT-CTCTTCCTTAGGATGCATGACAATGATGCTTTGTTGTCGCAAGA
1 TAG-GAACCAAAAACACATTCCT-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * ** * * * *
572188 GAACCTTTTCTTTCCAATGTTATTGATAAAATCAAAGTTTGCCTCTTAAATAAGGCAAACTTGAA
64 GAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAA
572253 TACTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTTATACGGAT
128 TACTCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGAT
* * * * * * * *
572317 ACAGGATATTGATGATTTGGTTTCGCAAGAAATGCTTTTTTCCTATCAATTTTTTTAAATTCTAA
192 ACATGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTCTAA
** * * *
572382 GTTCGTGCCTCAAAACAGAGAAACATGGATTCTAGTAAGGATCTTCATTCATTTCAAGATTAGGA
256 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGC
* ** * *
572447 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTT-TTATTGCATGGAAATCT
321 ACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTT-TTGCATGGAAATCT
** *
572511 TTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGATGTACATTGATTCTCG
385 TTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCG
572576 TAAAAGTCTCCATTCTTTTCAAGAT
450 TAAAAGTCTCCATTCTTTTCAAGAT
* * * * *
572601 TAGGAACCAAAAAGACATTCCTTTCATTAGGATACATGACATTGAT-ATGTTGGGGTTGCAAAAG
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCT-TTGGTGTCGCAAGAG
* * *
572665 AAGCTTGTCTTTCCACAGATATTGATAGAATCAAAGTTGTCTCTTAAATAAGATAAACATGAATA
65 AAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATA
* *
572730 CTCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATACGGATAAA
130 CTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
* **
572795 TGATATTGATGCTTTGCTTTCGCAAGATACGCCTTCGTCCCACCAATTTGTGTAAATTCTAAGTT
195 TGATATTGATGCTTTGGTTTCGCAAGATACG-CTTTTTCCCACCAATTTGTGTAAATTCTAAGTT
* * * *
572860 CGTGCCTTAAATGAGACAAACAGGGATTCTAGTATGGATCTTCATTCATTTCATGATTAGGTAC-
259 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
* *
572924 AGTAAAGACATTCTCCTTATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
324 A-TAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
* * * *
572989 CTTTGACTTATTTTCCATAAAATCAGAGTTTGCACTTCAAATGAGACATGCATTGATTCTCATAA
388 CTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAA
*
573054 CAGTCTCCATTCTTTTCAAGAT
453 AAGTCTCCATTCTTTTCAAGAT
* *
573076 TAGGATCCAAAAACACATTCCTTTCATTAGGATACATGACATTTATGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * * *
573141 AGGTTGTCTTTCCCCCATTATTGACAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * * * **
573206 TCATATTAAT-TCCATTCTTTTCTGGATTAGGTACCATAGGCATAGTCTTCTTATACGGATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* * * * * * *
573270 GATATTGTTGCTTTGGTTTCGCAAGATATG-TTTTCTTCCATCCGATTTGTGTAAAGTATGAGTT
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTTT-TCCCA-CCAATTTGTGTAAATTCTAAGTT
* * * * * * *
573334 CATTG-CTCAAATGAGACAAACATGGAATCTTGCAGGGGTCTTCATTCATTTCGTGATTAGGCAC
259 C-GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
* * * ** *
573398 CATAAACACATTCTCCGT-TTTAGGATAAATGTTATTGATGGTTTTCTTTTGCAT-GAAATTCTT
323 TATAAACACATTCTCC-TCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAA-TCTT
* *
573461 TTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGT
386 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
*
573526 AAAAGTCTCCATTCTTTTTAAGAT
451 AAAAGTCTCCATTCTTTTCAAGAT
* * * *
573550 T-GCGAACCAAAAGCACATTTCCTTT-ATTAGGATGCATGACAATGATGCTTTGCTGTCGCAAGA
1 TAG-GAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * * * * *
573613 GAACCTTTTCTTTCCAACATTATTGATAAAATCAAAGTTTGCCTCTTAAATAAGGCAAACTTGAA
64 GAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAA
* * *
573678 TACTCACACTAATCCCCATTCCTTTC-AGGATTAGGCACCGTAAACATAGTCTTCTTATACGGAT
128 TACTCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGAT
* * * * ** * * * *
573742 ACAGGATATTGATGATTTGGTGTCGCAAGAAACGCTTTTTTTTCACCAATTTTTATGAAGTCTAA
192 ACATGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTCTAA
* * * * * * **
573807 GTTTGTGCCTCAAATGAGAAAAACAGGGATTCTAGCAAAATGATCTTCATTCGTTTTGTGATTAG
256 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAG--TAAGGATCTTCATTCATTTCATGATTAG
* * * ** * ** *
573872 GCACTATAAACACATTCTCCTCCTTAGCATAAATGATATTGACGGTTTT-TTTTCGCCCGAAAAT
319 GCACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTT-GCATGGAAAT
* * * * * * *
573936 CTTTTCTTTTCCCTATTTTACTTAAAATCAAAGTTTGTC-CTTTCAAT-AGGGCAAGCATTGATT
383 CTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTG-CACTTTAAATGA-GACATGCATTGATT
* * * *
573999 CTTGTAACAGTCTCCATTTTTTTCAAAAT
446 CTCGTAAAAGTCTCCATTCTTTTCAAGAT
* * *
574028 T-GAGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCCTTGGTGTCACAAGAG
1 TAG-GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAG
* * * *
574092 AAGCTT-TCTTTCCACCGATATTGGTAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAAT
65 AAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAAT
* * * * *
574156 ACTCATACAAATCCCCATTCTTTTC-AGTATTAGCCACCATAAACATAGTCTTCTCAAAAC-AAT
129 ACTCATACTAATCCCCATTCTTTTCTAG-ATTAGGCACCATAAACATAGTCTTCT-TATACGGAT
* * * ** * * * * *
574219 ACATCATATTAATGCTTTGGTTTCGCAAGAAATACTTTCTTCCCACCAGTTTTTGTAAAGTATGA
192 ACATGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAA
* * * **
574284 GTTCAAT-CCTCAAATAAGACAAACATAGATTCTAGTAAGGATCTTCATTCATTTTGTGATTAGG
256 GTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGG
* * * * ** *
574348 TACTATAAATACATTCTCCTCATTAGGGTAAATGATATTGATGGTTTTCTTTTGCATAGAAATC-
320 CACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCT
** * *
574412 TTTCTTTGCCTCGTTTTCCATAAAATCAAAGTTTGTACTTGAAATGAGACATGCATTGATTCTCG
385 TTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCG
* *
574477 TAAAAGACTCCATTC-TTTCTAACAT
450 TAAAAGTCTCCATTCTTTTC-AAGAT
* ** * * ** * *
574502 TGGGAACCAGGAACACATTCCCTTT-TTTAGGATGCATGACATTGACACTTTGGCGTCACAAGAG
1 TAGGAACCAAAAACACATT-CCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAG
* * * * * * *
574566 AAGCTTTTCCTTCCACCATTATTGATAGAATCAAAGTTTGTCTCTCAAATATA-AAAAATATGAG
65 AAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATA-AGACAAACATGAA
* * * *
574630 TACT-ATACTAATCCACATTCTTTTCTAGATTAGGCACCATAACCATAGTCTTCTAATAAGGATA
128 TACTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATA
* * ** * *
574694 CATGATATTGATGCTTTGGTTTCTCAAGAAACATTTTCTTCCCGCCAATTTTTGTAAATTCTAAG
193 CATGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAG
* ** * *
574759 TTCATGCCTCAAATGAGACAGGCATGGATTCCAGTAAGGATCTTCATTCATTTCATGATTAGGAA
257 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCA
* * ** * *
574824 TTATAAACACATTCT-CTCTATTAGGATAAAAT-ATATTGATAGTTTT-TGTTTGGATGGAAATC
322 CTATAAACACATTCTCCTC-ATCAGGAT-GCATGATATTGATGGTTTTCT-TTTGCATGGAAATC
* * * *
574886 TTTTCTTTGCCTTACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCACTGATTCTC
384 TTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTC
*
574951 GTAAAAGTCTCCGTTCTTTTCAAGAT
449 GTAAAAGTCTCCATTCTTTTCAAGAT
* * *
574977 TAGGAACTAAAAACACATTCCTTTCATTAGGATACAAGACATTGATGCTTTGTTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* *
575042 AACTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAACAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * *
575107 ACATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTTTTAGGGATACA
131 TCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
* * *
575171 TGATATTGATTCTTTGGTTTCGCAAGATACGCTTTCTTCCAACCAATTTTTGTAAATTCTAAGTT
195 TGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTT
* *
575236 TGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAAT
259 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
* * * *
575301 ATAAACACATTCTCGTCATCAGAATGCATGGTATTGACGGTTTTCTTTTGCATGGAAATCTTTTC
324 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
* *
575366 TTTGCCTTATTTTCCATCAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAC
389 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAA
*
575431 AGTCTCAATTCTTTTCAAGAT
454 AGTCTCCATTCTTTTCAAGAT
* * * *
575452 TAGGAACCAAAAACACTTTCCTTTCATTAGGATACTTGACATTGATGCTTTCGTGTCACAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
*
575517 AGCTTGTCATTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * * * *
575582 TCATACTAATCCTCATTCTTTTCTGGATTAGGCACCATAAATATAGGCTTCTCATACGGATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* * *
575647 GATATTGATGCTTTGGTTTTGCAAGGTACGCTTTCTTCCCACCAATTTGTGTAAATTCAAAGTTC
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTTC
* * * * * *
575712 ATGCCTCAACTGAGATAAACATGGATTCTAGGAAGGATCATCACTCATTTCATGATTAGGCACTA
260 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTA
* * *
575777 TAAACACATTCTCCTCATCAGCATACATGATATTGAAGGTTTTCTTTTGCATGGAAATCTTTTCT
325 TAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
** * * * * *
575842 TTGCCTGGTTTTCTATAAAATCAAAGTTTACACTTTAAATGAGTCATGCATTGATTCTCATAATA
390 TTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAA
575907 GTCTCCATTCTTTTCAAGAT
455 GTCTCCATTCTTTTCAAGAT
** * *
575927 TAAAAACTAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCGTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* *
575992 AGTTTGTCTTTCCACTGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * * * *
576057 TCAGACTAATCCCCATTCTTTTCTGGTTTTGGCACCATAAGCATAGTCTTCTTATACGGATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
*
576122 GATATTGATGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGTAAATTCTATGTTC
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTTC
* * *
576187 GTGCCTCAAATGAGACAAACATGGATTCTAGTATGGATCTTCATCCATTTCATGACTAGGCACTA
260 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTA
* * * * * *
576252 TAAACACAATATCCTCATCAAGATGTATGATATTGATGGTTTTCTTCTCCATGGAAATCTTTTCT
325 TAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
*
576317 TTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAACA
390 TTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAA
576382 GTCTCCATTCTTTTCAAGAT
455 GTCTCCATTCTTTTCAAGAT
* * *
576402 TAGAAACGAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* ** *
576467 AGCTTGTCTTTCCACCGTTATTGATAAAATCAAAGTTGTCTCTTAAATAAGGTAAACAAGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * * *
576532 TCATACTAATCCCTACTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATACAGATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* ** * *
576597 GACATTG-TCGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGTAACGTATGAGTT
196 GATATTGAT-GCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTT
* * * * *
576661 CATTGCC-CAAATGAGACAAACAAGGATTCTTGTAGGGATCTTCATTCATTTCGTGATTAGGCAC
259 C-GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
* * * ** * *
576725 TATAAACACATTCTCCACTTTAGGATAAATGATACTGATGGTCTTCTTTTGCATGGAAATCTTTT
323 TATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
* * * *
576790 CTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACGTTAAATGAGACATGCATTGATTCTCATAA
388 CTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAA
576855 AAGTCTCCATTCTTTTCAAGAT
453 AAGTCTCCATTCTTTTCAAGAT
* * * * **
576877 T-GCAAACCAAAATCACATTCCATTCATTAGGATACATGACAATGATGCTTTACTGTCGCAAGAG
1 TAG-GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAG
** * * * * * *
576941 ATCCTT-TGCTTTCCAACGTCATTGATAAAATCAAAGTTTGCCTCTTAAATAAGGCAAACTTGAA
65 AAGCTTGT-CTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAA
* * *
577005 TACTCATACTAATCCCCATTCCTTTC-AGGATTAGGCACCGTAAACATAGTCTTTTTATACGGAT
128 TACTCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGAT
* * * * * * * * *
577069 ACAAGATATTGACGATTTGGTTTCGCAAGAAATGCTTTTTTCCAATCAATTTTTTTAAATTCTAA
192 ACATGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTCTAA
* * *
577134 GTTCGTGCCTCAAATGAGAGAAACATGGATTCTAGTAAGGATATTCATTCATTTCATGTTTAGGC
256 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGC
* * **
577199 ACTATAAACACATTCTCCTCATCAGCATGCATGATATTGATGGTTTTTTTTTTGCAAAGAAATCT
321 ACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGG-TTTTCTTTTGCATGGAAATCT
* *
577264 TTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAAAGAGACATGCATTGATTCTCA
385 TTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCG
* * *
577329 TAACAGTCTCCATTCGTTTAAAGAT
450 TAAAAGTCTCCATTCTTTTCAAGAT
* *
577354 TAGAAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGTTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * * * * * *
577419 AGCTTTTCTTTCCAACGTTATTGATAAAATCACAGTTTGCCTCTTAAATAAGGCAAACTTGAATA
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAATA
* * *
577484 CTCATACTAATCCCCATTCCTTT-TAGGATTAGGCACCGTAAACATAGTCTTTTTATACGGATAC
130 CTCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGATAC
* * * * * * * *
577548 AAGATATTGACGATTTGGTTTCGCAAGAAATGCTTTTTTCCCATCAATTTTTTTAAATTCTAAGT
194 ATGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTCTAAGT
* *
577613 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTCGTGATTAGGCAC
258 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
* * *
577678 TATAAGCACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTTTTTTTCATGGAAATCTTTT
323 TATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
* *
577743 CTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCATAG
388 CTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAA
* *
577808 CAGTCTCCATTCTTTTCAAGAA
453 AAGTCTCCATTCTTTTCAAGAT
*
577830 TAGGAACCAAAAACACATTTCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * *
577895 AGCTTGTCTTTCCCCCGTTATTGATAGAATCAAAGTTGCCTCTTAAATAAGACAAACACGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * * * *
577960 TCATACTACTCCCCATTCATTTC-AGGATTAGGCACCGTAAACATAGTCTTCTTTTAAGGATACA
131 TCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
* * *
578024 TGATATTGATGCTTCGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTTTCTAAATTCTAAGTT
195 TGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTT
* * *
578089 CGTGCCTCAAATGAGACAAACATGGATTCTAGCAAGGATATTCATTCATTTCATGATTAGGCTCT
259 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
* * *
578154 ATAAACGCATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATCGAAATCCTTTC
324 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
* * *
578219 CTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCATAAC
389 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAA
*
578284 AGTCTCCATTCTTTCCAAGAT
454 AGTCTCCATTCTTTTCAAGAT
* * * *
578305 TAGAAACCAAAAACACAATCCTTTCATTAGGATACAAGACATTGATGCGTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * *
578370 AGCTTGCCTTTCC-CCTGTTATTGATAGAATCAAAGTTGCCTCTTAAATAAGACAAACACGAATA
66 AGCTTGTCTTTCCACC-GTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATA
* * * * * *
578434 CTCATACTACTCCCTATTCATTT-TAGGATTAGGCACCGTAAACATAGTCTTCTTTTAAGGATAC
130 CTCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGATAC
* *
578498 ATGATATTGATGCTTTGGTTTCGCAAGATGCGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGT
194 ATGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGT
* * * *
578563 TCATGCCCCAATTGAGACAAACATTGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
258 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
* * * *
578628 AATAAACACATTCTCCTCATCAAGATGCATGATATTGATGGTTTTTTTTTTGCATAGAAATCTTT
323 TATAAACACATTCTCCTCATCAGGATGCATGATATTGATGG-TTTTCTTTTGCATGGAAATCTTT
* **
578693 TCTTCGCCTTATTTTCCATAAAATCAAAGTTTGCACTGCAAATGAGACATGCATTGATTCTCGTA
387 TCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTA
* *
578758 ACAGTCTCCATTCTTTCCAAGAT
452 AAAGTCTCCATTCTTTTCAAGAT
* * * *
578781 TAGAAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCGTTGGTGTGGCAAAAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * * * *
578846 ACCTTGTCTTTCCACCGTTATTGATAAAATCAAAGTTGCCTCTTAAAAAAGACAAACACGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * * *
578911 TCATACTACTCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCATATGGATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* * * * * *
578976 GACATTAACGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGGAAA-GCATGAGTT
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTC-TAAGTT
* * ** * * * * *
579040 CATTG-CTCAAATTAGACAATGATGGATTCTTGTAGGGATCTTCCTTCATTTCTTGATTAGGCAT
259 C-GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
* * * * ** * *
579104 TATAAACATATTCT-CTGCTTTAAGATAAATGATATTCATGGTTTTCTTTTGCATGAAAATCTTT
323 TATAAACACATTCTCCT-CATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTT
* * * *
579168 TCTTAGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCCCGTA
387 TCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT-
** * **
579233 ACCAAAAAC-ACATTCCCTTC---AT
451 A--AAAGTCTCCATTCTTTTCAAGAT
* ** * * * * * ** *
579255 TAAGATA-C-ATGACA-TTGATGCTTT-GTT--G-TCACA--AGA--GAAGCTTTTCTTTC-CAA
1 TAGGA-ACCAAAAACACAT--TCCTTTCATTAGGAT-ACATGACATTGATGCTTTGGTGTCGCAA
* ** * * * ** *
579308 CGTTATTGATAAAATCAAAGT-TTGCCTCC--TA--AATA-AGGCAAACTTGAATACTCATGCT-
62 -G--A--G----AAGC-TTGTCTTTCCACCGTTATTGATAGAATCAAAGTTG--T-CTC-T--TA
* * *** * ** * * ** * * * ** * **
579366 AATCCCCATACCTTTCAAGAATAGGCA-CCGTAA-ACATAGTC-TTCCTATACGGATGCAGGATA
111 AAT---AAGA-CAAACATGAATACTCATAC-TAATCCCCATTCTTTTCTAGA-TTAGGCACCATA
*** * * * **
579428 TTGAT-GAT-TTGGTT-T-C-G---CAAGA-A---ATGCTTT--TTTC-C--CAT-CAATTTTT-
170 AACATAG-TCTT-CTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGATACGCTTTTTC
** ** *** * * * * * * ** *
579474 GTA--AATTCTAAGTCCGTGCCTCAA-AT-GAGAC-AAACATG-GATTCTAGTAAGGA-TCT--T
233 CCACCAATT-TGTGTAAAT-TCT-AAGTTCGTGCCTCAA-ATGAGA--CAAACATGGATTCTAGT
*** * ** * * ** *
579530 CATTCAT-TTCA-TGA-TT-A-G-GCA--CTA-TA-AACACATTC-TCCTCATCAAGATGCA--C
292 -AAGGATCTTCATTCATTTCATGATTAGGC-ACTATAA-ACA--CATTCTCCTCATCA-GGATGC
*
579582 -G-ATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAG
351 ATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAG
*
579645 TTTGCACTTTAAATGAGACATGCATTGATTCTCGTAACAGTCTCCATTCTTTTCAAGAT
416 TTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGAT
* * **
579704 TTGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGGTTTGGTGTCATAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
*
579769 AGCTTG-CTTTCCACCGTTATAGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * * *
579833 TCATACTAATCCCCATTTTTTTCT-GTATTAGGCACTATAAACATAGTCTACTTATACGGGTACA
131 TCATACTAATCCCCATTCTTTTCTAG-ATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
* * * *
579897 TGATATTGATGCTTTGGTTTCGCAAGATATGCTTTTTTCCCACCAATTTGTGTAAAGTATGAGTT
195 TGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTCTAAGTT
* * * *
579962 CATTG-CTCAAATGAGACAAACATGGATTCTTGTAGGGATCTTCATTCATTTCATGATTAGGCTC
259 C-GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
* * * * ** * *
580026 TATAAACACATTCTCCGCTTTAGGGTAAATGATATTGATGGTTTTTTTTTGCATGAAAATCTTTT
323 TATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
* * * * * *
580091 GTTTGCCTTATTTTTCC-TAAAATCAAAGTTTGTATTTTAAATGATACATGCATTGACTCTTGTA
388 CTTTGCCTTA-TTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTA
580155 AAAGTCTCCATTCTTTTCAAGA-
452 AAAGTCTCCATTCTTTTCAAGAT
* * * * * * *
580177 TGGCGAACAAAAAACATATTTCC-TTCATTAGGATACAAGACAATGATGCTTTGCTGTCGCAAAA
1 TAG-GAACCAAAAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * * * **
580241 GAACCTT-TACTTTCCAACGTCATTTATAAAATCAAAGTCTGCCTCTTAAATAA-AGCAAATTTG
64 GAAGCTTGT-CTTTCCACCGTTATTGATAGAATCAAAGT-TGTCTCTTAAATAAGA-CAAACATG
* * *
580304 AATACTCATACTAATCCCCATTCCTTTCAAGATTAGGCACTATAAACATAGTCTTCTTATACGGA
126 AATACTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGA
* * * * * * *
580369 TACAGGATATTGATGATTTGGTTTCGTAAGAAACGCTTTTTCCCATCAATTTTTTTAAATTCTAA
191 TACATGATATTGATGCTTTGGTTTCGCAAGATACGCTTTTTCCCACCAATTTGTGTAAATTCTAA
** * *
580434 GTTTATGCCTCAAATGAGAGAAACATGGATTCTAGTAAGGATCTTCATGCATTTCATGATTAGGC
256 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGC
* * ** *
580499 ACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTTCTTTTGCATGGAAATCTT
321 ACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTT
*
580564 TTCTTTGCCTTATTTTCCGTAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
386 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
580629 AAAAGTCTCCATTCTTTTCAAGAT
451 AAAAGTCTCCATTCTTTTCAAGAT
* * *
580653 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGAGGCCTTGGTGTTGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
** * *
580718 AGCTTGTCTTTCCACCGTTATTGACCGAATCAAAGTTGTGTCTTAAATAAGACAAAAATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* *
580783 TCATACTAATCCCCATTCTGTTCTAGATTAGGCACAATAAACATAGTCTTCTTATACGGATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* * *
580848 GATGTTGAAGCTTTGGTTTCGCATGATACGCTTTTGTCCCACCAATTTGTGTAAATTCTAAGTTC
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTTT-TCCCACCAATTTGTGTAAATTCTAAGTTC
* * * * *
580913 GTGCCTCAAATGAGACAAACATGGATTCTAGTATGGATCTTCATTCATTTTATGATTTGGCCCCA
260 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTA
* *
580978 TAAACACATTCTCCTCATCAGGATGCATGATATTAATGGTTTTCTTTTGCATGGAAATCTTTTCA
325 TAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* * * *
581043 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAGTGAGACATGCATTGATTCACGTAAAA
390 TTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAA
*
581108 GTCTCCATTCCTTTCAAGAT
455 GTCTCCATTCTTTTCAAGAT
*
581128 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * * * * * *
581193 AGCTTGTATTTCCACCATGATTGATAGAATCAAATTTTGCCTCTTAAATAAGCCAAACAGGAATA
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAA-GTTGTCTCTTAAATAAGACAAACATGAATA
*
581258 CTCATACTAGTCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
130 CTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
* * *
581323 TGATATTGATGCTTTGGTTTCGCAAGATATGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGTC
195 TGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTT
* * * * *
581388 CGTGCCTCAAATGAGACAAACATGGATTCTAGTATGGATCTTCAATCATTTCGTGATTAAGCACC
259 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
*
581453 ATAAACACATTCTCCTCAGCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
324 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
* ** * *
581518 TTTGCCTTATTTTCCTTAAAATCAAAGTTTGTGCTTTAAATGAGACATGCATTGATTCACATAAA
389 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAA
*
581583 AGTCTCCATTCTTTTCTAGAT
454 AGTCTCCATTCTTTTCAAGAT
*
581604 TAGGAGCCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
** * * * *
581669 AGCTTGTCTTTCCACCGAGATTAATAGAATCAAAGTTTGCCTCTTAAATAAGCCAAACAGGAATA
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAATA
* * **
581734 CTTATAGTAAAGCCCATTCTTTTCTAGATTAGGCACCATAAAACATAGTCTTCTTATACGGATAC
130 CTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCAT-AAACATAGTCTTCTTATACGGATAC
* * *
581799 ATAATATTGATGCTTTGGTTTCAG-AAGATACGCTTTTGTCCTACCAATTTGTGTAAATTCTAAA
194 ATGATATTGATGCTTTGGTTTC-GCAAGATACGCTTTT-TCCCACCAATTTGTGTAAATTCTAAG
* * * * * *
581863 TTCGTGCCTTAAATGAGATAAACAAGGATTCTAGTATGGATCTTCATTCATTTCTTGACTAGGCA
257 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCA
* * * * *
581928 CCATAAACACAATCTCCGCAACAGGATGCATGATATTCATGGTTTTCTTTTGCATGGAAATCTTT
322 CTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTT
581993 TCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTA
387 TCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTA
* *
582058 AAAGACTCCATTCCTTTCAAGAT
452 AAAGTCTCCATTCTTTTCAAGAT
* * *
582081 TAGGAA-CAAAAAAACATTCCTTTCATTAGTATACATAACATTGATGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
*
582145 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACAAGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * *
582210 TCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTCAAACGGATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* * * * * * *
582275 GACATTAACGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGGAAAGTATGAGTTC
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTTC
* * * *
582340 ATTG-CTCAAATGAGACAAAGATGGATTCTTGTAGGGATCTTCATTCATTTCATGATTAGGCACT
260 -GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
* * * * ** *
582404 ATAAAGACATTCTCCGCTTTAGGATAAATGATATTTATGGTTTTCTTTTGCATGGAAATCTTTTC
324 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
* * * * * *
582469 TTAGCCTTATTTTCCTTAAAATCAAAGCTTGTACTTTAAATTAGACATGCATTGATTCTCGTAAG
389 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAA
582534 AGTCTCCATTCTTTTCAAGAT
454 AGTCTCCATTCTTTTCAAGAT
* * *
582555 T-GTGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGTTGTCACAAGAG
1 TAG-GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAG
* * * * * * *
582619 AAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGCCTCTTACATAAGGCAAACTTGAAT
65 AAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAAT
* * * * ** * *
582684 ACTCATGCTAATCCCCATTCCTTTCAAGAATAGGCACCGCAAACATAGTCTTCCTATACGGATAT
129 ACTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATAC
* * * * * * *
582749 AGGATATTCATGATTTGGTTTCGCAAGAAATGCTTTTTTCCCATCAATTTTTGTAAATTCTAAGT
194 ATGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTCTAAGT
*
582814 TCGTGGCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
258 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
*** * *
582879 TATAAACACATTCTCCTCATTC-GGAAAAATGATATTGATGGTTTTTTTTTTGCATGGACATCTT
323 TATAAACACATTCTCCTCA-TCAGGATGCATGATATTGATGG-TTTTCTTTTGCATGGAAATCTT
*
582943 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTCCACTTTAAATGAGACATGCATTGATTCTCGT
386 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
583008 AAAAGTCTCCATTCTTTTCAAGAT
451 AAAAGTCTCCATTCTTTTCAAGAT
* * * *
583032 TAGGAACCAAAAACGCATTCCTTTCATTTGGATACATGACATTGATGCGTTGGGGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * *
583097 AGCTTGTC--T--ACAGATATTGATAGAATCAAAGTTGTCTCTTAAATATGACAAACATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
*
583158 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTCTACGGATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* *
583223 GATATTGATGCTTTGGTTTCGCAAGATATGCTTTCGTCCCACCAATTTGTGTAAATTCTAAGTTC
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTTC
* *
583288 AG-GCCTCAAATGAGACAAACATGGATACTAGTATGGATCTTCATTCATTTCATGATTAGGCACT
260 -GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
* * * *
583352 ATAAACACATTCCCCTCATCAAGATGCATGATATTGATGGTTTTCTTTCGCATGGAAATTTTTTC
324 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
* * *
583417 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTGAATGAGACATGCATTGATTCTCATAAC
389 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAA
583482 AGTCTCCATTCTTTTCAAGAT
454 AGTCTCCATTCTTTTCAAGAT
* * *
583503 TTGGAACCAAAAGCACATTTCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* *
583568 AGCTTGTCTTTCCACCGTTATAGTTAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
*
583633 TCATACTAATCCCCATTTTTTTCT-GTATTAGG---------C--A-----C-TATA---A-ACA
131 TCATACTAATCCCCATTCTTTTCTAG-ATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
* * * * * *
583676 TGATATTGACGCTTTGGTTTCACAAGATATGCTTTTTTCCCACCAATTTGTGTAAAGTATGAGTT
195 TGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTCTAAGTT
* * *
583741 CATTG-CTCAAATGAGACAAACATGGATTCTTGT-AGGTATCTTCATTCATTTCGTGATTAGGCA
259 C-GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGG-ATCTTCATTCATTTCATGATTAGGCA
* **
583804 CTATAAACACATTCT-CTGCTTCAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTT
322 CTATAAACACATTCTCCT-CATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATC-T
* * * *
583868 TTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAAGGAGACATGCATTGATTCTCA
385 TTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCG
*
583933 TAAAAGTGTCCATTCTTTTCAAGAT
450 TAAAAGTCTCCATTCTTTTCAAGAT
* * * *
583958 T-GCGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTCGGTGTTGTAA-AT
1 TAG-GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA-
* ** * * *
584021 GAAGCTTTTCTTTCCAATGTTATTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACAAGAA
64 GAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAA
* *
584086 TACTCATACTAATCCTCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCCTATACGGATA
128 TACTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATA
** * * * * *
584151 CATGGCATTAATGCTTTGCTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGTAAAGTATGAG
193 CATGATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAG
* ** * * * * *
584216 TTCATTACTCAAATGAGACAAACATGGGTTCTTGTAGGGATCTTCATTCATTTCGTGATTAGGCT
257 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCA
* * ** * **
584281 CTATAAACACATTCTCCGT-TTTAGGATAAATGATATTGATGGTTTTTTTTTGCATTAAAATCTT
322 CTATAAACACATTCTCC-TCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTT
* * *
584345 TTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGATACATGCATTGATTCTCGT
386 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
584410 AAAAGTCTCCATTCTTTTCAAGA-
451 AAAAGTCTCCATTCTTTTCAAGAT
* * * * * *
584433 TGGCGAACAAAAAACATATTCCCTTCATTAGGATACATGACAATGATGCTTTGTTGTCGCAAGAG
1 TAG-GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAG
* * * * * ** * ** *
584498 AACCTTTTCTTTCCAACGTCATTGATAAAATCAAAGTCTCCCTGTTAAATAA-AGCAAATTTCAA
65 AAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGT-TGTCTCTTAAATAAGA-CAAACATGAA
* ** *
584562 TACTCATACTAATCCCCATTCCTTTC-AGGATTAGGCACTGTAAACATAGTATTCTTATACGGAT
128 TACTCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGAT
* * * * * * *
584626 ACAGGATATTGGTGATTTGGTTTCGTAAGAAACGCTTTTTCCCATCAATTT-TTTAAAATTCTAA
192 ACATGATATTGATGCTTTGGTTTCGCAAGATACGCTTTTTCCCACCAATTTGTGT-AAATTCTAA
* * *
584690 GTTTGTGCCTCAAATGAGAGAAATATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGC
256 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGC
* * ** * *
584755 ACTATAAACACATTCTCCTCATTAGGGTAAAAGATATTGATGGTTTTCTTATGCATGGAAATCTT
321 ACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTT
* * *
584820 TTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGCACTTTAAAAGAGACAGGCATTGATTCTCGT
386 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
584885 AAAAGTCTCCATTCTTTTCAAGAT
451 AAAAGTCTCCATTCTTTTCAAGAT
**
584909 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTTACAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * * * **
584974 AGCTTGTCTTTCCACCGTGATTGATAGAATCAAAGTTTGCCTCTTAACTAAGCCAAACGGGAATA
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAATA
585039 CTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
130 CTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACA
* *
585104 TGATATTGGTGCTTTGGTTTCGCATGATACGCTTTTGTCCCACCAATTTGTGTAAATTCTAAGTT
195 TGATATTGATGCTTTGGTTTCGCAAGATACGCTTTT-TCCCACCAATTTGTGTAAATTCTAAGTT
* * * * * * *
585169 CGTGCCTCAAATGAGACAATCAAGGATTCTAGTATGGATCGTCTTTCATTTC-TCAACTAGGCAC
259 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCAT-GATTAGGCAC
* *
585233 TAT-AACACAATCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATTGAAATCTTTT
323 TATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
*
585297 CATTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAA
388 CTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAA
585362 AAGTCTCCATTCTTTTCAAGAT
453 AAGTCTCCATTCTTTTCAAGAT
585384 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* *
585449 AGCTTGTCTTTCCACCGTGATTGATAGAATCAAAGTTGTCACTTAAATAAGACAAACA-GTAATA
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATG-AATA
* * * *
585513 CTCATATTAATCCCCATTCTTTCCTGGATTAGGCACCATAAATCGAT--TCTTCTTATACAGATA
130 CTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAA-C-ATAGTCTTCTTATACGGATA
* * * * * *
585576 CCTAATATTGATGTTTTGGTTTCGCAAGATATG-TTTTCGTCCCACCAGTTTGTGTAAATTATAA
193 CATGATATTGATGCTTTGGTTTCGCAAGATACGCTTTT--TCCCACCAATTTGTGTAAATTCTAA
* * *
585640 GTCCGTGCCTCAAATGAGACAAACATGGATTCTAGTATGGATCTTCATTCATTTCATGATTAGGA
256 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGC
* * *
585705 ACTATAAACACATTCTGCTCATCAGGATGCACGATGTTGATGGTTTTCTTTTGCATGGAAATCTT
321 ACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTT
* *
585770 TTCTTAGCCTTATTTTCCTTAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
386 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
*
585835 TAAAGTCTCCATTCTTTTCAAGAT
451 AAAAGTCTCCATTCTTTTCAAGAT
585859 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * *
585924 AGCTTGTCTTTCCACCGTGATTGATAGAATCAAAGTTGTCACTTAAATAAGACAAACAGGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * * * * * *
585989 TCATACAAATCCCCATTCTTTCCTTGATTAGGCACCATAAACCTTGTTTTCTTATACAGATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* * * * *
586054 GATATTGATGTTTTGGTTTCGCAAGATATG-TTTTCGTCCCACCAGTTTGTGTAAATTATAAGTC
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTTT--TCCCACCAATTTGTGTAAATTCTAAGTT
* * **
586118 CGTGCCTCAAATGAGACAAACATGGATTCTAGTATGGATTTTCATTCATTTCATGATTAGAAACT
259 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
*
586183 ATAAACACATTCTCCTCATCAGGATGCATGATGTTGATGGTTTTCTTTTGCATGGAAATCTTTTC
324 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
* *
586248 TTTGCCTTATTTTCCATAAAATCAAAGTTTTCTCTTTAAATGAGACATGCATTGATTCTCGTAAA
389 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAA
586313 AGTCTCCATTCTTTTCAAGAT
454 AGTCTCCATTCTTTTCAAGAT
* * * * *
586334 T-GCAAACCAAAAACACATTCCCTTCATTAGGATACATGATATTGATGCTTTGTTGTCACAAGAG
1 TAG-GAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAG
* * * * *
586398 AAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGCCTCTTAAATAAGGA-AAACTTGAA
65 AAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAA-GACAAACATGAA
* * * *
586462 TACTCATACTAATCCTCATTCCTTT-TAGGATTAGGCACCGTAAACATAGTATTCTTATACGGAT
128 TACTCATACTAATCCCCATTCTTTTCTA-GATTAGGCACCATAAACATAGTCTTCTTATACGGAT
* * * * * * *
586526 ACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCTATCAATTTTTTTAAATTCTAA
192 ACATGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTCTAA
586591 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGC
256 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGC
* ** *
586656 ACTATAAACACATTCTTCTCATTC-GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
321 ACTATAAACACATTCTCCTCA-TCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCT
* * *
586720 TTTCATTGCCATATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATACATTGATTCTCG
385 TTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCG
*
586785 TTAAAGTCTCCATTCTTTTCAAGAT
450 TAAAAGTCTCCATTCTTTTCAAGAT
*
586810 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAGGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * *
586875 AGCTTTTCTTTCCACCGTTATAGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACACGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * *
586940 TCATACTAATCCCCATT-TTTTCTGGATTAGGCACCATAAACATAGTCTGCTTATACAGATACAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* * * * *
587004 GATATTGATGATTTGGTTTCGTAAGAAACGCTTTTTTCCAGTCAATTTGTGTAAATTCTAAGTTC
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTTTTCCCA-CCAATTTGTGTAAATTCTAAGTTC
* *
587069 GTGCCTCCAATGAGAGAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTA
260 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTA
* * *
587134 TAAACACGTTCTCCTCATCAGCATGCATGATATTGATGGTTTTTTTTTGCATGGAAATCTTTTCT
325 TAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* * **
587199 TTGCCTTATTTTCCATAAAATCTATGTTTAAACTTTAAATGAGACATGCATTGATTCTCGTAAAA
390 TTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAA
* *
587264 GTCTCCACTCGTTTCAAGAT
455 GTCTCCATTCTTTTCAAGAT
* * *
587284 TAGGAACCAAAAACACATTCCTTTCCTTAGGATACATGACATTGATGCCTTGGTTTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * * *
587349 AGCTTTTCTTTCCACCATTATAGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACACGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* * * * * *
587414 TCATAATAATCCCCATTTTTTTCTGGATTAGGCACCATAAACATCGTCTGCTTATACGGATACAA
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* * * * * * *
587479 GATATTAAAGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGCAGAGTATGAGTTT
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAG-TT
** * * * * *
587544 ATTG-CTCAAATGAGACAAACAGGGATTCTTGTAGGGATCTTCATTCATTTCGTGATTAGCCACT
259 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACT
* * * * ** * *
587608 ATAAACCCATTCTCCGCTTTAGGATAAATGATATTCATGGTTTTCTTTTGTATGGAAATCTTTTC
324 ATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
* * * * *
587673 TTAGCCTTCTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAAACATGCATTGATTCTCGTAAA
389 TTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAA
587738 AGTCTCCATTCTTTTCAAGAT
454 AGTCTCCATTCTTTTCAAGAT
* * *
587759 T-GCGAACCAAAAACACAAT-CTCTTCATTAGGATACATGACATTGATGCTTTGTTGTCACAAGA
1 TAG-GAACCAAAAACACATTCCT-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * * * * *
587822 GAAGCTTTTCTTTCCAACGTTGTTGATAAAATCAATGTTTGCCTCTTAAATAAGGCAAACTTGAA
64 GAAGCTTGTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAA
* *
587887 TA---GT-C--AT----A-------CTA-A-T---C-CC----A-ATAGTCTTCTTATACGAATA
128 TACTCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATA
* * * * * *
587924 CAAGATATTGATGATTTGGTTTCGTAAGAAATGCTTTTTTCCCATCAATTTGTGTAAATTCTAAG
193 CATGATATTGATGCTTTGGTTTCGCAAGATACGC-TTTTTCCCACCAATTTGTGTAAATTCTAAG
*
587989 TTCGTGCCTTAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCA
257 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCA
* * * * * *
588054 CTTTAAACACGTTTTCCTAATCAGCATGCATGATATTGATGGTTTTCTTTTGCGTGGAAATCTTT
322 CTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTT
* * **
588119 TCCTTGCCTTATTTTCCATAAACTCAAAGTTTAAACTTTAAATGAGACATGCATTGATTCTCGTA
387 TCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTA
* *
588184 ACAGTCTCCATTATTTTCAAGAT
452 AAAGTCTCCATTCTTTTCAAGAT
* * * *
588207 TAGGAACCAAAAACACATACCTTTCATTAGCATACATGACATTGATGCTTTGGTTTCGTAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* *
588272 AGCTTGTCTTTCCACCGTTATTGATAAAATCAAAGTTGTCTCTCAAATAAGACAAACATGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* ** *
588337 TCATACTAATCCCCATTCTTTTCTGGATTAGGCACCATAAACATAGTCTTCTTATAAAGATATAT
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* * *
588402 GATATTGATGCTTTAGTTTCGCAAGATACGCTTTCTTCCCACTAATTTTTGTAAATTCTAAGTTC
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTTC
* * *
588467 GTACCTCAAATGAGACAAACATGGATTCTGGTAAGGATCTTCATTCATTTCATGATTTGGCACTA
260 GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTA
*
588532 TAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTTCATGGAAATCTTTTCT
325 TAAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCT
* **
588597 TTGCCTTATTTTCCATAAAATGAAAGTTTAAACTTTAAATGAGACATGCATTGATTCTCGTAAAA
390 TTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAA
*
588662 GTGTCCATTCTTTTCAAGAT
455 GTCTCCATTCTTTTCAAGAT
* *
588682 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATCGATGTTTTGGTGTCGCAAGAGA
1 TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
* * *
588747 AGCTTTTCTTTCCACCGTTATAGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACACGAATAC
66 AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
* ** * *
588812 TCATACTAATCCCCATT-TTTTCTGGATTAGGCACCATAAATGTAGTCTGCTTATACGGATACAA
131 TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
* * * * * * * *
588876 GATATTGAAGCTTTGGTTTCCCAAGATATGCTTTCTTCCCACCAATTTGTGCAGAGTATGAGTTC
196 GATATTGATGCTTTGGTTTCGCAAGATACGCTTT-TTCCCACCAATTTGTGTAAATTCTAAGTTC
* * * * *
588941 ATTG-CTCAAATGAGACAAACAAGGATTCTTGTAGGGATCTTCATTCATTTCGTGATT
260 -GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATT
588998 GCGAACCAAA
Statistics
Matches: 20560, Mismatches: 2512, Indels: 896
0.86 0.10 0.04
Matches are distributed among these distances:
443 13 0.00
444 18 0.00
445 11 0.00
446 10 0.00
447 41 0.00
448 427 0.02
449 25 0.00
450 18 0.00
451 12 0.00
452 16 0.00
453 10 0.00
454 176 0.01
455 176 0.01
456 72 0.00
457 10 0.00
458 16 0.00
459 13 0.00
460 9 0.00
461 10 0.00
462 15 0.00
463 391 0.02
464 65 0.00
465 8 0.00
466 12 0.00
467 12 0.00
468 7 0.00
469 6 0.00
470 17 0.00
471 189 0.01
472 245 0.01
473 614 0.03
474 2493 0.12
475 9177 0.45
476 3857 0.19
477 1367 0.07
478 559 0.03
479 26 0.00
480 35 0.00
481 3 0.00
482 325 0.02
483 54 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (474 bp):
TAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGA
AGCTTGTCTTTCCACCGTTATTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACATGAATAC
TCATACTAATCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTTATACGGATACAT
GATATTGATGCTTTGGTTTCGCAAGATACGCTTTTTCCCACCAATTTGTGTAAATTCTAAGTTCG
TGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTAT
AAACACATTCTCCTCATCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTT
TGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAAG
TCTCCATTCTTTTCAAGAT
Found at i:568238 original size:158 final size:157
Alignment explanation
Indices: 565146--579019 Score: 2859
Period size: 158 Copynumber: 87.6 Consensus size: 157
565136 ATACTAATCC
* * * ** * * * * *
565146 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTATCATAAAGATATAGGATATTGATGAT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
* * * * * * * *
565211 TTGGTTTCACAAGAAACGCTTTTTTCCCATCAATTTTAGTAAATTCTAAGTTCGTGC-CTCAAGT
66 TTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAAAT
* *
565275 GAGACAAATATGGATTCTAGTAAAGATCT
129 GAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * * *
565304 TCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCGTCATGATGCATGATTTTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-GC
** * * * * *** * *
565369 TTTCTTTTGCATGGAAATC-TTTTCTTTGCC-CTATTTTCCATAAAATCAAAGTT-TGCACTTTA
65 TTTGGTTTGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
** * * *
565431 AATGAGACATGCATTGATTCTCGTAA-TAGTCT
126 AATGAGACAAACATGGATTCTAGTAAGGA-TCT
* * * * ** * * **
565463 CCATTCTTTTCAAGATTAGGAACCAAAAACACACTCTTTTCATTAGGATTCATGGCATTGATGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
* * * *
565528 TTGGTGTTGCAAGAGAA-GCTTGTCTTTCCGCC-GTTATTGATAGAA-TCAAAGTTGTG-TCTTA
66 TTGGT-TTGCAAGA-AACGCTT-TCTTCCCACCATTTTTTG-TA-AATTCAAAGTTGTGCTCTTA
* * * * *** *
565589 AATAAGACAAACAAGAATACTCA-TACTAATCC
126 AATGAGACAAACATGGATTCT-AGTAAGGATCT
* ** * * * *
565621 CCATTGTTTTC-TAGATTAGGCACCATAAACTTAGTCTTCTTAT-ACGTATACATGATATTGATG
1 CCATTCTTTTCAT-GATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGATG
* * * * *
565684 CTTTGGTTTCGCAAGATACGCTTT-TGTCCCACCAATTTGTGTAAATTCTAAGTTCGTGC-CTCA
64 CTTTGGTTT-GCAAGAAACGCTTTCT-TCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTA
565747 AATGAGACAAACATGGATTCTAGTAAGGATCT
126 AATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * *
565779 TCATTCATTTCATGATTAGGCACTATAAACAC--TCTCCTCATCAGGATGCATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-GC
** * * * ** *** * * *
565842 TTTCTTTTGCATGGAAATC-TTTTCTTTGCC-TTATTTTCCATAAAATCAAAGTT-TTCACATTA
65 TTTGGTTTGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
** * ** * * *
565904 AATGAGACATGCGTTAATTCTCGTAA-TAGTCC
126 AATGAGACAAACATGGATTCTAGTAAGGA-TCT
* * ** * * * * *
565936 CCATTCTTTTCAAGATTAGGAATGAAAAACACATTC-CTTTCATTAGGATAAATGACATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * * ** * *
566000 TTTAGTGTCGTAAGAGAA-GCTTGTCTTTCCACC-GCTATTGATAGAA-TCAAAGTTGT-CTTTT
65 TTTGGT-TTGCAAGA-AACGCTT-TCTTCCCACCATTTTTTG-TA-AATTCAAAGTTGTGCTCTT
* * * *** *
566061 AAATAAGACAAACATGAATACTCA-TACTAATCC
125 AAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * * *
566094 CCATTCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATAATGATGC
1 CCATTC-TTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGC
* * * * * * * *
566159 TTTGGTTTCGCAAGATACACTTTTTTCCCACCAATTTGTGTAAA-GCATGAGTTCATTGCTC--A
65 TTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCA-AAGTT--GTGCTCTTA
* * * *
566221 AATGAGACAAGCAT-GAGTTCATTTCGCAAGACACATCT
126 AATGAGACAAACATGGA-TTC---TAGTAAG---GATCT
* * * * * * *
566259 TCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-GC
** * ** * ** * *
566324 TTTCTTTTGCATGAAAATCTTTTCCTTGCC-TTATTTTCCTTG-AAA-TCAAACTTTGTACT-TT
65 TTTGGTTTGCAAGAAACGC-TTT-CTTCCCACCATTTT--TTGTAAATTCAAA-GTTGTGCTCTT
** * * * *
566385 AAATGAGACATGCATTGATTCTCGCAA-AAGTCT
125 AAATGAGACAAACATGGATTCTAGTAAGGA-TCT
* * * * *
566418 CCATTCTTTTCAAGATT-GTGAACCAAAAACACATTC-CCTTCATTAGGATACATGACATTGATG
1 CCATTCTTTTCATGATTAG-GCACCATAAACACATTCTCC-TCATCAGGATACATGATATTGATG
* * * * * *
566481 CTTTGGTGTCGCAAGAGAA-GCTTTTCTTTCCAAC-GTTATTGATAAAATCAAAGTT-TGCCTCT
64 CTTTGGT-TTGCAAGA-AACGC-TTTCTTCCCACCATTTTTTG-TAAATTCAAAGTTGTG-CTCT
* * * *** *
566543 TAAATAAGACAAACATGAATACTCA-TACTAATCC
124 TAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * * * *
566577 CCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCC-CATAAGGATACAGGATATTAATGA
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTC-TCCTCATCAGGATACATGATATTGATGC
* * * * *
566641 TTTGGTTTCGCAAGAAACGCTTTTTTCCCATCAATTTTTGTAAATTCTAAGTTCGTGC-CTCAAA
65 TTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAAA
*
566705 TGAGACAAATATGGATTCTAGTAAGGATCT
128 TGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * * *
566735 TCATTCATTTCATGATTAGGCACTATAAACACGTTCTCCTCATGAAGATGCATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
** * **** * * *
566800 TTTTTTTGCATGAAA-GTCTTT-TTTTTGCC-TTATTTTCCTTAAAATCAAAGTTTGTACT-TTA
66 TTGGTTTGCAAGAAACG-CTTTCTTCCCACCATT-TTTT--GTAAATTCAAAG-TTGTGCTCTTA
* ** ** * *
566861 AATGCGACATGCATTCATTCTTGTAA-AAGTCT
126 AATGAGACAAACATGGATTCTAGTAAGGA-TCT
* * * * * * * *
566893 CCATTATTTTTAAGATTAGGAACCAAAAACACATTC-CCTTCATTAGGGA-ACATGACAATGATG
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCC-TCATCA-GGATACATGATATTGATG
* * * * *
566956 CTTT-GTTGTCGCAA-AAGAAGCCTGTCTTTCCATC-TTTATTGATAGAA-TCAAAGTT-TGTCT
64 CTTTGGTT-T-GCAAGAA-ACG-CTTTCTTCCCACCATTTTTTG-TA-AATTCAAAGTTGTG-CT
* * * ** * *** *
567016 CTTAAATAAGAAAAACCTTAATACTCA-TACTAATCG
122 CTTAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * * *
567052 ACATTCTTTTC-TGGATTGGGCACCATAAACATAGTT-TTCTTATAAGGATAAATGATATTGATG
1 CCATTCTTTTCAT-GATTAGGCACCATAAACACA-TTCTCCTCATCAGGATACATGATATTGATG
* * * * * *
567115 CTTTGGTTTTGCTAGAAATGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGC-CTCAA
64 CTTTGG-TTTGCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAG-TTGTGCTCTTAA
* * * *
567179 ATGAGACAAACAGGGATTCTGGCAAAATGATCT
127 ATGAGACAAACATGGATTCTAG--TAAGGATCT
* * * * * * * *
567212 TCATTCATTTT-GTGATTAGGCACTATAAACACATTCTTCTCATTAGCATAAATGATATTGACAG
1 CCATTC-TTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGA-TG
* ** * * ** * * * * *
567276 TTTTCATTCGCACGAAAATCTTTTCTTTTCC-CTATTTTACT-TAAAATCAAAGTT-TGTCCCTT
64 CTTTGGTTTGCAAGAAACGC-TTTC-TTCCCACCATTTT-TTGTAAATTCAAAGTTGTG-CTCTT
* * * * * * *
567338 CAAT-AGGGCAAGCATTGACTCTTGTAA-TAGTCT
125 AAATGA-GACAAACATGGATTCTAGTAAGGA-TCT
** * ** * * * * * *
567371 CTTTTTTTTTCAAAATTAAGAACCAAAAACACATTC-CCTTCATTAAGATACATGACATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCC-TCATCAGGATACATGATATTGATGC
* ** * * * * *
567435 CTTGGTGTCACAAGAGAA-GCTTTTCTTTCTATCGA--TATTGATAAAATCAAAGTT-TGTCTCT
65 TTTGGT-TTGCAAGA-AACGC-TTTCTTCCCA-CCATTTTTTG-TAAATTCAAAGTTGTG-CTCT
* * * * * * *
567496 TAAGTAAGACAAACGTGAATACTCA-TACA-AATCC
124 TAAATGAGACAAACATGGATTCT-AGTA-AGGATCT
* * * ** **
567530 CCATTCTTTTCA-GTATTAGGCACCATAAACATAGTCTTCTCAGAACAATACATGATATTGATGC
1 CCATTCTTTTCATG-ATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGC
* ** * ** * * *
567594 TTTGGTTTCACAAGAAGTGCTTTCTTCCCACCAATTTTTGTAACGT-ATGAGTTCAAT-C-CTCA
65 TTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCA-AAGTT--GTGCTCTTA
567656 AATGAGACAAACATGGATTCTAGTAAGGATCT
126 AATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * *
567688 TCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATGG
1 CCATTC-TTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGC
** * * * ** **** * * *
567752 TTTTTTTTGCATGGAAATC-TTTTCCTTGCC-TTATTTTCCAAAAAATCAAAGAT-TGCACTTTA
65 TTTGGTTTGCA-AGAAA-CGCTTT-CTTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
** *
567814 AATGAGACATGCACT-GATTCTCA-TAA-AAGTCT
126 AATGAGACAAACA-TGGATTCT-AGTAAGGA-TCT
* * * * * ** * ** * *
567846 CCATTCTTTTCAAGATTAGGAACCAAAAACATATTC-CTTTCATTGGGATACGTGGCAATGTTGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * ** *
567910 TTTGGTGTCGCAAGAGAA-GCTTGTCTTTCCACC-GTTACTGATGGAA-TCAAAGTT-TGTCTCT
65 TTTGGT-TTGCAAGA-AACGCTT-TCTTCCCACCATTTTTTG-T-AAATTCAAAGTTGTG-CTCT
* * * ***
567971 TAAATAAGACAAACATGAATACTTA-TACTAATC-
124 TAAATGAGACAAACATGGATTC-TAGTAAGGATCT
** * * * * *
568004 CACATTCTTTTCAAAATTAGGCACCATAAACATAGTCTTCTTATACA-GATACATGATATTGATA
1 C-CATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCAT-CAGGATACATGATATTGATG
* * *
568068 CTTTGGTTTTGCAAGATACGCTTTCTTCCCACCATTTTTTGTAAATTCTAAGTTCGTGC-CTCAA
64 CTTTGG-TTTGCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAA
568132 ATGAGACAAACATGGATTCTAGTAAGGATCT
127 ATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * *
568163 TCATTCATTTCATGATTAGGCACTATAAATACATTCTCCTCATCAGGATGCATGATATTGATGGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-GC
* * * * ** *** ** *
568228 TTT-CTATTGCATGGAAATC-TTTTCTTTGCC-TTATTTTCCATAAAAACAAAGTT-TGCACGTT
65 TTTGGT-TTGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TT
* ** * * *
568289 AAATTAGACATGCATTGATTCTCGTAA-CAGTCT
125 AAATGAGACAAACATGGATTCTAGTAAGGA-TCT
* * * * * * * * * *
568322 CCATTCTTTTCAAGATTAGGAACCAAAAACACATTC-CTTTCATTAGTATACAAGACAATGTTGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * * * *
568386 TTTGGTGTCGCAAGAGA-GCTTGTCTTTCCACC-GTTATTGATGGAA-TCAAAGTTGT-CTCTTA
65 TTTGGT-TTGCAAGAAACGCTT-TCTTCCCACCATTTTTTG-T-AAATTCAAAGTTGTGCTCTTA
* * * ** * *** *
568447 AATAAGAAAAACCTAAATACTCA-TACTAATCG
126 AATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * * *
568479 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTACCT-TTAATGATACATGATATTGACGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCT-CCTCATCAGGATACATGATATTGATGC
* * * * * * *
568543 TTTGGTTTCGCAAGATACGTTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCTAC-CTCAAAT
65 TTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTCTTAAAT
*
568607 GAGACAAACATTGATTCTAGT-AGTGATCT
129 GAGACAAACATGGATTCTAGTAAG-GATCT
* * * * * *
568636 TCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCGTCAGGATGCATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
** * * * ** *** * *
568701 TTTCTCTTGCATGGAAAAC-TTTTCTTTGCC-TTATTTTCCATAAAATCAAAGTT-TGCACTTTA
66 TTGGT-TTGCA-AG-AAACGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
** * * *
568763 AATGAGACATGCATTGATTCTCGTAA-CAGTCT
126 AATGAGACAAACATGGATTCTAGTAAGGA-TCT
* * * * * * *
568795 CCATTCTTTTCAAGATTAGGAACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGGTG-
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * * * *
568858 TGTTGGTGTCGCAAGAAAAGCTTGTCTTTCCACC-CTTATTGATAGAA-TCAAAGTTG-GCTTTT
65 T-TTGGT-TTGCAAGAAACGCTT-TCTTCCCACCATTTTTTG-TA-AATTCAAAGTTGTGCTCTT
* * * *
568920 AAATAAGACAAACATGAATACTCATGCT-A--ATCC
125 AAATGAGACAAACATGGATTCT-A-G-TAAGGATCT
* * * * * ** * ** *
568953 CCATTCTTTTCAGGATCAGGGACCACAAACATAGCCTTCTTTTAAGGATACATGATATTGATGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
* * * * * * *
569018 TTGGTTTCACAAGATACGCTTTCTTCCCTCCAATTTGTGTAAATTCTAAGTTCGTGC-CTCAAAT
66 TTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAAAT
* *
569082 AAGACAAACATGGATTCTATTAAGGATCT
129 GAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * *
569111 TCACTCATTTCATGATTAGGCACTATAAATACATTCTCCTCATCAGCATACATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-GC
** * * * ** *** * *
569176 TTTCTTTTGCATGGAAATC-TTTTCTTTGCC-TTATTTTCCATAAAATCAAAGTT-TGCACTTTA
65 TTTGGTTTGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
** ** * **
569238 AATGAGACATGCATTAATTCTCGTAACAATCT
126 AATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * * * * *
569270 CCGTTCTTTTCAAGATTAGGAACCAAAAACACAATC-CTTTTATTAGGATACATCACATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * *
569334 TTTGGTGTCGCAAGAGAA-GCTGGTCTTTCCC-CC-GTTATTGATAGAA-TCAAAGTTGT-CTCT
65 TTTGGT-TTGCAAGA-AACGCT-TTC-TTCCCACCATTTTTTG-TA-AATTCAAAGTTGTGCTCT
* * * *** *
569394 TAAATAAGACAAACATGAATACTCA-TACTAATCC
124 TAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * *
569428 CCATTCTTTTC-TAGATTAGGCACCATAAACATAGTCTTCTTATACA-GATACATGATATTGATG
1 CCATTCTTTTCAT-GATTAGGCACCATAAACACATTCTCCTCAT-CAGGATACATGATATTGATG
* * * * *
569491 CTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCGTGC-CTCAC
64 CTTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAA
*
569555 ATGAGACAAACATGGATTCTAGTAGGGATCT
127 ATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * *
569586 TCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCGTCAGGATGCATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-GC
** * *** * ** *** * *
569651 TTTCTTTTGCATGGAAAAATTTTCTTTGCC-TTATTTTCCATAAAATCAAAGTT-TGC-ATT---
65 TTTGGTTTGCA-AGAAACGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTCTTAAA
** * *
569710 T--G-----CATTAATTCTCGTAA-CAGTCT
128 TGAGACAAACATGGATTCTAGTAAGGA-TCT
* * * * * * *
569733 CCATTCTTTTCAAGATTAGGAACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGGTGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * * * ** *
569797 GTTGGTGTCGGAAGAAAAGCTTGTCTTTCCACC-GGTATTGATAGAA-TCAAAGTTGT-CTCTTA
65 TTTGGT-TTGCAAGAAACGCTT-TCTTCCCACCATTTTTTG-TA-AATTCAAAGTTGTGCTCTTA
* * * *
569859 AATAAGACAAACATGAATACTCATGCT-A--ATCC
126 AATGAGACAAACATGGATTCT-A-G-TAAGGATCT
* * * * ** * ** *
569891 CCATTCTTTTCAGGATCAGGCACCACAAACATAGCCTTCTTTTAAGGATACATGATATTGATGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
* * * * *
569956 TTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCATGC-CTCAAAT
66 TTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAAAT
*
570020 GAGACAAACATGGATTCTTGTAAGGATCT
129 GAGACAAACATGGATTCTAGTAAGGATCT
* * * * * *
570049 TCATTCATTTCATGATTAAGCACTATAAACACATTCTCCTCATCAGGATGCATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-GC
** * * * ** *** * * *
570114 TTTCTTTTTGCATGGAAATC-TTTTCTTTGCC-TTATTTTCCATAAAATCAAAGTT-TTCACTTT
65 TTT-GGTTTGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TT
* ** * ** *
570176 AAATGAGAGACGCATTGATTCTCA-TAACAACCT
125 AAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * *
570209 CCATTCTTTTCAAGATTAGG-ATCCAAAAACACATTC-CTCTCATTAGGATGCATGACATTGATG
1 CCATTCTTTTCATGATTAGGCA-CCATAAACACATTCTC-CTCATCAGGATACATGATATTGATG
* * * * * * *
570272 CTTTGGTGTCGCAAGAGAA-GCTTGTATTTCCTCCGTTATTGGTAGAA-TCAAAGTTGT-CTCTT
64 CTTTGGT-TTGCAAGA-AACGCTT-TCTTCCCACCATTTTTTGTA-AATTCAAAGTTGTGCTCTT
* * * * *** *
570334 AAA-GAAGACAAACTTGAATACCCA-TACTAATCC
125 AAATG-AGACAAACATGGAT-TCTAGTAAGGATCT
* * * ** * *
570367 CCATTCTTTTCAGGATTAGGCACCATAAACA-TTGTCTTCTTTTAAGGGTACATGATATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACAT-TCTCCTCATCAGGATACATGATATTGATGC
* * * * * * *
570431 TTTGGTTTCGCAAGATACGCTTTTTTCCCACCAATTTGTGTAAATTCTAAGTTTATGC-CTCAAA
65 TTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAG-TTGTGCTCTTAAA
570495 TGAGACAAACATGGATTCTAGTAAGGATCT
128 TGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * * *
570525 TCATTCATTTCGTGATTAGGCACTATAAACATATTCTCCACATCAGGATGCATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-GC
** * * * ** *** * *
570590 TTTCTTTTGCACAAAAATC-TTTTCTTTGCC-TTATTTTCCATAAAATCAAAGTT-TGCACTTTA
65 TTTGGTTTGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
* *** * * *
570652 AATGAGTCACGTATTGATTCTCA-TAA-CAGCCT
126 AATGAGACAAACATGGATTCT-AGTAAGGA-TCT
* * * * * * *
570684 CCATTCTTTTCAAGATTAGG-ATCCAAAAACAAATT-TCTTTCATTAGGATGCATGACATTGATG
1 CCATTCTTTTCATGATTAGGCA-CCATAAACACATTCTC-CTCATCAGGATACATGATATTGATG
* * * * * *
570747 CTTTGGTGTCGCAAGAGAA-GGTTGTCTTTCTC-CC-GTTGTTGATAGAA-TCAAAGTCGT-CTC
64 CTTTGGT-TTGCAAGA-AACGCTT-TC-TTCCCACCATTTTTTG-TA-AATTCAAAGTTGTGCTC
** * ** * *
570807 AAAAATAAGACAAACGCGAATACTCATGCT-A--ATC-
123 TTAAATGAGACAAACATGGATTCT-A-G-TAAGGATCT
* * * ** * * * * *
570841 CCCTTTTCTTTC-TGGATTAGGAACCATACGCATAGTCTTCTTAT-ACGGATACATGATATGGAT
1 CCATTCT-TTTCAT-GATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGAT
* * * * * * *
570904 GCTTTGGTTTCACAAGATACGCTTTCTTCCCACCAATTTGTGTAAAGT-ATGAGTTCATTGCTC-
63 GCTTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCA-AAGTT--GTGCTCT
* * * *
570967 -AAATAAGATAAACATGGATTCTTGTAGGGATCT
124 TAAATGAGACAAACATGGATTCTAGTAAGGATCT
* * * ** * * * * * *
571000 TCATTCATTTCGTGATTAGGCATTATAAATACATTCTCCGCTTTAGGATAAATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
** ** * ** * * * *
571065 TTTCTTT-CACATGAAAATCATTTCTTTGCC-TTATTTTCCT-TAAAATCATAGTT-TGCACTTT
66 TTGGTTTGCA-A-GAAACGC-TTTC-TTCCCACCATTTT-TTGTAAATTCAAAGTTGTGCTC-TT
** * * *
571126 AAAT-ATGACATGCATTGATTCTCGTAA-AAGTCT
125 AAATGA-GACAAACATGGATTCTAGTAAGGA-TCT
* * * * * * *
571159 CCATTCTTTGCAAGATTAGG-ATCCAAAAACACATTC-CTTTCATTAGGATACATCACATTGATG
1 CCATTCTTTTCATGATTAGGCA-CCATAAACACATTCTC-CTCATCAGGATACATGATATTGATG
* * * *
571222 CTTTGGTGTCGCAAGAGAA-GCTTGTCTTTCCACC-GTTATTGATAGAA-TCAAAGTTGT-CTCT
64 CTTTGGT-TTGCAAGA-AACGCTT-TCTTCCCACCATTTTTTG-TA-AATTCAAAGTTGTGCTCT
* * * * *** *
571283 TAAATAAGGCAAACATGAATACTCA-TACTAATCC
124 TAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * * *
571317 CCATTCTTTTC-TGGATTAGGCACCATAACCATAGTCTTCTTAT-ACGAATACATGATTTTGATG
1 CCATTCTTTTCAT-GATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGATG
* * * * * * * *
571380 CTTTGCTTTTCTAAGATACGCTTTCTTCCCATCAATTTGTGTAAATTCTAAGTTCGTGC-CTCAA
64 CTTTGGTTTGC-AAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAA
571444 ATGAGACAAACATGGATTCTAGTAAGGATCT
127 ATGAGACAAACATGGATTCTAGTAAGGATCT
* * * ** * * * *
571475 TCACTCATTTCATGATTAGGCACTGTAAACACATTCACCTCATGAGCATACATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-GC
** * * * ** *** * *
571540 TTTCTTTTGCACAAAAATC-TTTTCTTTGCC-TTATTTTCCATAAAATCAAAGTT-TGCACTTTA
65 TTTGGTTTGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
** * * *
571602 AATGAGACATGCATTGATTCTCGTAA-CAGTCT
126 AATGAGACAAACATGGATTCTAGTAAGGA-TCT
* * * * *
571634 CCATTCTTTTCGA-GATTAGAG-ACAAAAAACACATTC-CTTTCATTAGGATACATGACATTGAT
1 CCATTCTTTTC-ATGATTAG-GCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGAT
* * * * * * ** *
571696 GCTTTGGTGTCGTAATAAAAGCTTGTCTTTCCACC-GTTAATGATAAAATCAAAGTTGT-CTCTT
63 GCTTTGGT-TTGCAAGAAACGCTT-TCTTCCCACCATTTTTTG-TAAATTCAAAGTTGTGCTCTT
* * * * * ***
571759 AAATAAGGCAAACAAGAATACTCA-TACTAATC-
125 AAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * *
571791 CCTACTCTTTTC-TGGATTAGGCACCATAAATATAGTCT--TCATATACGGATACATGACATTGA
1 CC-ATTCTTTTCAT-GATTAGGCACCATAAACACATTCTCCTCAT-CA-GGATACATGATATTGA
* * * * * *
571853 TGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGTAAAGT-ATGAGTTCAATGCTC
62 TGCTTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCA-AAGTT--GTGCTC
* * *
571917 --AAATGAGACAAATATGGATTCTTGTAGGGATCT
123 TTAAATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * * * * *
571950 TCATTCATTTCGTGAGTAGGCACTATAAACACATTCTCCACTTTATGATAAATGATACTT-ATGG
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATA-TTGAT-G
* ** * * * ** * * *
572014 TTTTCTTTTGCATGGAAATC-TTTTCTTTGCC-TTATTTTCCT-TAAAATCAAAGTTTGTACT-T
64 CTTTGGTTTGCA-AGAAA-CGCTTTC-TTCCCACCATTTT-TTGTAAATTCAAAG-TTGTGCTCT
* ** * *
572075 TAAATCAGACATGCATTGATTCTTA-TAA-AAGTCT
124 TAAATGAGACAAACATGGATTC-TAGTAAGGA-TCT
* * * * * * * * * *
572109 CCACTCTTTTCAAGATT-GCGAACCAAAAACACATTCTCTTCCTTAGGATGCATGACAATGATGC
1 CCATTCTTTTCATGATTAG-GCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGC
* * *
572173 TTT-GTTGTCGCAAGAGAAC-CTTTTCTTTCCA--ATGTTATTGATAAAATCAAAGTT-TGCCTC
65 TTTGGTT-T-GCAAGA-AACGC-TTTCTTCCCACCAT-TTTTTG-TAAATTCAAAGTTGTG-CTC
* * * * * *** *
572233 TTAAATAAGGCAAACTTGAATACTCA-TACTAATCC
123 TTAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * * *
572268 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTTAT-ACGGATACAGGATATTGATGA
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGATGC
* * * * * *
572332 TTTGGTTTCGCAAGAAATGCTTTTTTCCTATCAATTTTTT-TAAATTCTAAGTTCGTGC-CTCAA
65 TTTGGTTT-GCAAGAAACGCTTTCTTCCCA-CCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAA
** *
572395 AACAGAGAAACATGGATTCTAGTAAGGATCT
127 ATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * * * *
572426 TCATTCATTTCAAGATTAGGAACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGAT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
** * * * ** *** * *
572491 TTTTTATTGCATGGAAATC-TTTTCTTTGCC-TTATTTTCCATAAAATCAAAGTT-TGCACTTTA
66 TTGGT-TTGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
*** * * *
572553 AATGAGATGTACATTGATTCTCGTAA-AAGTCT
126 AATGAGACAAACATGGATTCTAGTAAGGA-TCT
* * * * * * *
572585 CCATTCTTTTCAAGATTAGGAACCAAAAAGACATTC-CTTTCATTAGGATACATGACATTGATAT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTG--AT
* * * * ** *
572649 G-TTGGGGTTGCAA-AAGAAGCTTGTCTTTCCA-CAGATATTGATAGAA-TCAAAGTTGT-CTCT
63 GCTTTGGTTTGCAAGAA-ACGCTT-TCTTCCCACCATTTTTTG-TA-AATTCAAAGTTGTGCTCT
* * * * *** *
572709 TAAATAAGATAAACATGAATACTCA-TACTAATCC
124 TAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * *
572743 CCATTCTTTTC-TGGATTAGGCACCATAAACATAGTCTTCTTAT-ACGGATAAATGATATTGATG
1 CCATTCTTTTCAT-GATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGATG
* * * * * * *
572806 CTTTGCTTTCGCAAGATACGCCTTCGTCCCACCAATTTGTGTAAATTCTAAGTTCGTGC-CTTAA
64 CTTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAA
* *
572870 ATGAGACAAACAGGGATTCTAGTATGGATCT
127 ATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * *
572901 TCATTCATTTCATGATTAGGTA-CAGTAAAGACATTCTCCTTATCAGGATGCATGATATTGATGG
1 CCATTCTTTTCATGATTAGGCACCA-TAAACACATTCTCCTCATCAGGATACATGATATTGAT-G
* ** * * ** * *** * * *
572965 TTTTCTTTTGCATGGAAATC-TTTTCTT-TGACTTATTTTCCATAAAATCAGAGTT-TGCACTTC
64 CTTTGGTTTGCA-AGAAA-CGCTTTCTTCCCAC-CATTTTTTGTAAATTCAAAGTTGTGCTCTT-
** * *
573027 AAATGAGACATGCATTGATTCTCA-TAA-CAGTCT
125 AAATGAGACAAACATGGATTCT-AGTAAGGA-TCT
* * * * * *
573060 CCATTCTTTTCAAGATTAGG-ATCCAAAAACACATTC-CTTTCATTAGGATACATGACATTTATG
1 CCATTCTTTTCATGATTAGGCA-CCATAAACACATTCTC-CTCATCAGGATACATGATATTGATG
* * * *
573123 CTTTGGTGTCGCAAGAGAA-GGTTGTCTTTCCC-CCA-TTATTG-ACAGAATCAAAGTTGT-CTC
64 CTTTGGT-TTGCAAGA-AACGCTT-TC-TTCCCACCATTTTTTGTA-A-ATTCAAAGTTGTGCTC
* * * ***
573183 TTAAATAAGACAAACATGAATACTCA-TATTAAT-T
123 TTAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* ** * * * * *
573217 CCATTCTTTTC-TGGATTAGGTACCATAGGCATAGTCTTCTTAT-ACGGATACATGATATTGTTG
1 CCATTCTTTTCAT-GATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGATG
* * * * * * *
573280 CTTTGGTTTCGCAAGATATGTTTTCTT-CCATCCGA-TTTGTGTAAAGT-ATGAGTTCATTGCTC
64 CTTTGGTTT-GCAAGAAACGCTTTCTTCCCA-CC-ATTTTTTGTAAATTCA-AAGTT--GTGCTC
* * * * *
573342 --AAATGAGACAAACATGGAATCTTGCAGGGGTCT
123 TTAAATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * *
573375 TCATTCATTTCGTGATTAGGCACCATAAACACATTCTCCGT-TTTAGGATAAATGTTATTGATGG
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCC-TCATCAGGATACATGATATTGAT-G
* ** * ** * ** * * *
573439 TTTTCTTTTGCATGAAATTCTTTTCTTTGCC-TTATTTTCCT-TAAAATCAAAGTTTGTACT-TT
64 CTTTGGTTTGCAAGAAACGC-TTTC-TTCCCACCATTTT-TTGTAAATTCAAAG-TTGTGCTCTT
** * * *
573501 AAATGAGACATGCATTGATTCTCGTAA-AAGTCT
125 AAATGAGACAAACATGGATTCTAGTAAGGA-TCT
* * * * * * * *
573534 CCATTCTTTTTAAGATT-GCGAACCA-AAAGCACATT-TCCTTTATTAGGATGCATGACAATGAT
1 CCATTCTTTTCATGATTAG-GCACCATAAA-CACATTCTCC-TCATCAGGATACATGATATTGAT
* * * * * *
573596 GCTTTGCTGTCGCAAGAGAAC-CTTTTCTTTCCAACA-TTATTGATAAAATCAAAGTT-TGCCTC
63 GCTTTGGT-TTGCAAGA-AACGC-TTTCTTCCCACCATTTTTTG-TAAATTCAAAGTTGTG-CTC
* * * * * * *** *
573658 TTAAATAAGGCAAACTTGAATACTCA-CACTAATCC
123 TTAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * * * * *
573693 CCATTCCTTTCAGGATTAGGCACCGTAAACATAGTCTTCTTAT-ACGGATACAGGATATTGATGA
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGATGC
* * ** * * * * * *
573757 TTTGGTGTCGCAAGAAACGCTTTTTTTTCACCAATTTTTATGAAGTCTAAGTTTGTGC-CTCAAA
65 TTTGGT-TTGCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAG-TTGTGCTCTTAAA
* * * *
573821 TGAGAAAAACAGGGATTCTAGCAAAATGATCT
128 TGAGACAAACATGGATTCTAG--TAAGGATCT
* * * * * * * * *
573853 TCATTCGTTTT-GTGATTAGGCACTATAAACACATTCTCCTCCTTAGCATAAATGATATTGACGG
1 CCATTC-TTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGC
** ** ** * * * * *
573917 TTTTTTTTCGCCCGAAAATCTTTTCTTTTCC-CTATTTTACT-TAAAATCAAAGTTTGTCCT-TT
65 TTTGGTTT-GCAAGAAACGC-TTTC-TTCCCACCATTTT-TTGTAAATTCAAAG-TTGTGCTCTT
* * * * * *
573979 CAAT-AGGGCAAGCATTGATTCTTGTAA-CAGTCT
125 AAATGA-GACAAACATGGATTCTAGTAAGGA-TCT
* ** * * * *
574012 CCATTTTTTTCAAAATT-GAGAACCAAAAACACATTC-CCTTCATTAGGATACATGACATTGATG
1 CCATTCTTTTCATGATTAG-GCACCATAAACACATTCTCC-TCATCAGGATACATGATATTGATG
* ** * * * *
574075 CCTTGGTGTCACAAGAGAA-GCTTTCTTTCCACCGA-TATTGGTAAAATCAAAGTT-TGTCTCTT
64 CTTTGGT-TTGCAAGA-AACGCTTTCTTCCCACC-ATTTTTTGTAAATTCAAAGTTGTG-CTCTT
* * * * * *
574137 AAATAAGGCAAACATGAATACTCA-TACA-AATCC
125 AAATGAGACAAACATGGATTCT-AGTA-AGGATCT
* * * * ** ** * *
574170 CCATTCTTTTCA-GTATTAGCCACCATAAACATAGTCTTCTCAAAACAATACATCATATTAATGC
1 CCATTCTTTTCATG-ATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGC
** * * * * *
574234 TTTGGTTTCGCAAGAAATACTTTCTTCCCACCAGTTTTTGTAAAGT-ATGAGTTCAAT-C-CTCA
65 TTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCA-AAGTT--GTGCTCTTA
* *
574296 AATAAGACAAACATAGATTCTAGTAAGGATCT
126 AATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * * *
574328 TCATTCATTTT-GTGATTAGGTACTATAAATACATTCTCCTCATTAGGGTAAATGATATTGATGG
1 CCATTC-TTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-G
* ** * * * * *** *
574392 TTTTCTTTTGCATAGAAA-TCTTTCTTTGCC-TCGTTTTCCATAAAATCAAAGTT-TG-TACTTG
64 CTTTGGTTTGCA-AGAAACGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCT-CTT-
** * * *
574453 AAATGAGACATGCATTGATTCTCGTAAAAGA-CT
125 AAATGAGACAAACATGGATTCTAGT-AAGGATCT
** * * ** ** * * * **
574486 CCATTC-TTTCTAACATTGGGAACCAGGAACACATTC-CCTTTTTTAGGATGCATGACATTGACA
1 CCATTCTTTTC-ATGATTAGGCACCATAAACACATTCTCC-TCATCAGGATACATGATATTGATG
* ** *
574549 CTTTGGCGTCACAAGAGAA-GCTTTTCCTT-CCACCA-TTATTGATAGAA-TCAAAGTT-TGTCT
64 CTTTGG-TTTGCAAGA-AACGC-TTT-CTTCCCACCATTTTTTG-TA-AATTCAAAGTTGTG-CT
* * * * * ***
574609 CTCAAAT-ATA-AAAAATATGAGTACTA-TACTAATC-
122 CTTAAATGAGACAAACAT-GGA-TTCTAGTAAGGATCT
* * * * * *
574643 CACATTCTTTTC-TAGATTAGGCACCATAACCATAGTCTTCTAATAAGGATACATGATATTGATG
1 C-CATTCTTTTCAT-GATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATG
* ** * * * * *
574707 CTTTGGTTTCTCAAGAAACATTTTCTTCCCGCCAATTTTTGTAAATTCTAAGTTCATGC-CTCAA
64 CTTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAA
** *
574771 ATGAGACAGGCATGGATTCCAGTAAGGATCT
127 ATGAGACAAACATGGATTCTAGTAAGGATCT
* * * ** * *
574802 TCATTCATTTCATGATTAGGAATTATAAACACATTCT-CTCTATTAGGATAAAAT-ATATTGATA
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTC-ATCAGGAT-ACATGATATTGAT-
* * * * * * ** * *
574865 GTTTTTGTTTGGATGGAAATC-TTTTCTTTGCCTTA-C-TTTCCT-TAAAATCAAAGTTTGTACT
63 GCTTTGGTTTGCA-AGAAA-CGCTTTC-TT-CC-CACCATTTTTTGTAAATTCAAAG-TTGTGCT
** * *
574926 -TTAAATGAGACATGCACT-GATTCTCGTAA-AAGTCT
122 CTTAAATGAGACAAACA-TGGATTCTAGTAAGGA-TCT
* * * * * * * * *
574961 CCGTTCTTTTCAAGATTAGGAACTAAAAACACATTC-CTTTCATTAGGATACAAGACATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * *
575025 TTT-GTTGTCGCAAGAGAA-ACTTGTCTTTCCACC-GTTATTGATAGAA-TCAAAGTTGT-CTCT
65 TTTGGTT-T-GCAAGA-AACGCTT-TCTTCCCACCATTTTTTG-TA-AATTCAAAGTTGTGCTCT
* * ** * *** *
575085 TAAATAAGACAAACATGAACAC-ACATACTAATCC
124 TAAATGAGACAAACATGGATTCTA-GTAAGGATCT
* * * * * * *
575119 CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT-TTTAGGGATACATGATATTGATTC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGATGC
* * * * *
575183 TTTGGTTTCGCAAGATACGCTTTCTTCCAACCAATTTTTGTAAATTCTAAGTTTGTGC-CTCAAA
65 TTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAG-TTGTGCTCTTAAA
575247 TGAGACAAACATGGATTCTAGTAAGGATCT
128 TGAGACAAACATGGATTCTAGTAAGGATCT
* * ** * * * * * *
575277 TCATTCATTTCATGATTAGGCAATATAAACACATTCTCGTCATCAGAATGCATGGTATTGACGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGA-TGC
** * * * ** *** *
575342 TTTCTTTTGCATGGAAATC-TTTTCTTTGCC-TTATTTTCCATCAAA-TCAAAGTT-TGCACTTT
65 TTTGGTTTGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGT-AAATTCAAAGTTGTGCTC-TT
** * * *
575403 AAATGAGACATGCATTGATTCTCGTAA-CAGTCT
125 AAATGAGACAAACATGGATTCTAGTAAGGA-TCT
* * * * * * *
575436 CAATTCTTTTCAAGATTAGGAACCAAAAACAC-TT-TCCTTTCATTAGGATACTTGACATTGATG
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCC--TCATCAGGATACATGATATTGATG
* ** * *
575499 CTTTCGTGTCACAAGAGAA-GCTTGTCATT-CCACC-GTTATTGATAGAA-TCAAAGTTGT-CTC
64 CTTTGGT-TTGCAAGA-AACGCTT-TC-TTCCCACCATTTTTTG-TA-AATTCAAAGTTGTGCTC
* * * ***
575559 TTAAATAAGACAAACATGAATACTCA-TACTAATC-
123 TTAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * ** *
575593 CTCATTCTTTTC-TGGATTAGGCACCATAAATATAGGCTTCTCAT-ACGGATACATGATATTGAT
1 C-CATTCTTTTCAT-GATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGAT
** * * * *
575656 GCTTTGGTTTTGCAAGGTACGCTTTCTTCCCACCAATTTGTGTAAATTCAAAGTTCATGC-CTCA
63 GCTTTGG-TTTGCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTA
* * *
575720 ACTGAGATAAACATGGATTCTAGGAAGGATCAT
126 AATGAGACAAACATGGATTCTAGTAAGGATC-T
* * * * * *
575753 -CACTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGCATACATGATATTGAAGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTG-ATGC
** * * * *** * * * * *
575817 TTTCTTTTGCATGGAAATC-TTTTCTTTGCC-TGGTTTTCTATAAAATCAAAGTT-TACACTTTA
65 TTTGGTTTGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
* ** * *
575879 AATGAGTCATGCATTGATTCTCA-TAA-TAGTCT
126 AATGAGACAAACATGGATTCT-AGTAAGGA-TCT
* *** * * * * *
575911 CCATTCTTTTCAAGATTAAAAACTAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * * *
575975 GTTGGTGTCGCAAGAGAA-GTTTGTCTTTCCA-C-TGTTATTGATAGAA-TCAAAGTTGT-CTCT
65 TTTGGT-TTGCAAGA-AACGCTT-TCTTCCCACCAT-TTTTTG-TA-AATTCAAAGTTGTGCTCT
* * * *** *
576035 TAAATAAGACAAACATGAATACTCAG-ACTAATCC
124 TAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * * *
576069 CCATTCTTTTC-TGGTTTTGGCACCATAAGCATAGTCTTCTTAT-ACGGATACATGATATTGATG
1 CCATTCTTTTCAT-GATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGATG
* * * * * *
576132 CTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGTAAATTCTATGTTCGTGC-CTCAA
64 CTTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAA
*
576196 ATGAGACAAACATGGATTCTAGTATGGATCT
127 ATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * * * ** *
576227 TCATCCATTTCATGACTAGGCACTATAAACACAATATCCTCATCAAGATGTATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
** * * * * ** *** * *
576292 TTTCTTCTCCATGGAAATC-TTTTCTTTGCC-TTATTTTCCATAAAATCAAAGTT-TGCACTTTA
66 TTGGTT-TGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
** * * *
576354 AATGAGACATGCATTGATTCTCGTAA-CAGTCT
126 AATGAGACAAACATGGATTCTAGTAAGGA-TCT
* ** * * * * *
576386 CCATTCTTTTCAAGATTAGAAACGAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * * * *
576450 TTTGGTGTCGTAAGAGAA-GCTTGTCTTTCCACC-GTTATTGATAAAATCAAAGTTGT-CTCTTA
65 TTTGGT-TTGCAAGA-AACGCTT-TCTTCCCACCATTTTTTG-TAAATTCAAAGTTGTGCTCTTA
* ** * * * ***
576512 AATAAGGTAAACAAGAATACTCA-TACTAATC-
126 AATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * *
576543 CCTACTCTTTTC-TGGATTAGGCACCATAAACATAGTCTTCTTATACA-GATACATGACATTG-T
1 CC-ATTCTTTTCAT-GATTAGGCACCATAAACACATTCTCCTCAT-CAGGATACATGATATTGAT
* * * ** * *
576605 CGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGTAACGT-ATGAGTTCATTGC-C
63 -GCTTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCA-AAGTT--GTGCTC
* * * *
576668 -CAAATGAGACAAACAAGGATTCTTGTAGGGATCT
123 TTAAATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * * * * *
576702 TCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCACTTTAGGATAAATGATACTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
** * * * ** * *
576767 CTTCTTTTGCATGGAAATC-TTTTCTTTGCC-TTATTTTCCT-TAAAATCAAAGTT-TG-TACGT
66 -TTGGTTTGCA-AGAAA-CGCTTTC-TTCCCACCATTTT-TTGTAAATTCAAAGTTGTGCT-C-T
** * *
576827 TAAATGAGACATGCATTGATTCTCA-TAA-AAGTCT
124 TAAATGAGACAAACATGGATTCT-AGTAAGGA-TCT
* * * * *
576861 CCATTCTTTTCAAGATT--GCAAACCA-AAATCACATTC-CATTCATTAGGATACATGACAATGA
1 CCATTCTTTTCATGATTAGGC--ACCATAAA-CACATTCTC-CTCATCAGGATACATGATATTGA
** * * * * * ** *
576922 TGCTTTACTGTCGCAAGAGATC-CTTTGCTTTCCAAC-GTCATTGATAAAATCAAAGTT-TGCCT
62 TGCTTTGGT-TTGCAAGA-AACGCTTT-CTTCCCACCATTTTTTG-TAAATTCAAAGTTGTG-CT
* * * * * *** *
576984 CTTAAATAAGGCAAACTTGAATACTCA-TACTAATCC
122 CTTAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * ** * * * *
577020 CCATTCCTTTCAGGATTAGGCACCGTAAACATAGTCTTTTTAT-ACGGATACAAGATATTGACGA
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGATGC
* * * * * *
577084 TTTGGTTTCGCAAGAAATGCTTTTTTCCAATCAATTTTTT-TAAATTCTAAGTTCGTGC-CTCAA
65 TTTGGTTT-GCAAGAAACGCTTTCTTCCCA-CCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAA
* *
577147 ATGAGAGAAACATGGATTCTAGTAAGGATAT
127 ATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * *
577178 TCATTCATTTCATGTTTAGGCACTATAAACACATTCTCCTCATCAGCATGCATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-G-
* ** * * ** *** * *
577243 TTTTTTTTTGCAAAGAAATC-TTTTCTTTGCC-TTATTTTCCATAAAATCAAAGTT-TGCACTTT
64 CTTTGGTTTGC-AAGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TT
* ** * *
577305 AAAAGAGACATGCATTGATTCTCA-TAA-CAGTCT
125 AAATGAGACAAACATGGATTCT-AGTAAGGA-TCT
* * * ** * * * *
577338 CCATTCGTTTAAAGATTAGAAACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * * * *
577402 TTT-GTTGTCGCAAGAGAA-GCTTTTCTTTCCAAC-GTTATTGATAAAATCACAGTT-TGCCTCT
65 TTTGGTT-T-GCAAGA-AACGC-TTTCTTCCCACCATTTTTTG-TAAATTCAAAGTTGTG-CTCT
* * * * * *** *
577463 TAAATAAGGCAAACTTGAATACTCA-TACTAATCC
124 TAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * ** * * *
577497 CCATTCCTTTT-AGGATTAGGCACCGTAAACATAGTCTTTTTAT-ACGGATACAAGATATTGACG
1 CCATT-CTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGATG
* * * * * *
577560 ATTTGGTTTCGCAAGAAATGCTTTTTTCCCATCAATTTTTT-TAAATTCTAAGTTCGTGC-CTCA
64 CTTTGGTTT-GCAAGAAACGCTTTCTTCCCA-CCATTTTTTGTAAATTCAAAGTT-GTGCTCTTA
*
577623 AATGAGACAAACATGGATTCTAGTAACGATCT
126 AATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * *
577655 TCATTCATTTCGTGATTAGGCACTATAAGCACATTCTCCTCATCAGGATGCATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-GC
** * * * * ** *** * *
577720 TTTTTTTTTCATGGAAATC-TTTTCTTTGCC-TTATTTTCCATAAAATCAAAGTT-TGCACTTTA
65 TTTGGTTTGCA-AGAAA-CGCTTTC-TTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
** * *
577782 AATGAGACATGCATTGATTCTCA-T-AGCAGTCT
126 AATGAGACAAACATGGATTCT-AGTAAGGA-TCT
* * * * * * *
577814 CCATTCTTTTCAAGAATAGGAACCAAAAACACATT-TCTTTCATTAGGATACATGACATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * *
577878 TTTGGTGTCGCAAGAGAA-GCTTGTCTTTCCC-CC-GTTATTGATAGAA-TCAAAGTTG-CCTCT
65 TTTGGT-TTGCAAGA-AACGCTT-TC-TTCCCACCATTTTTTG-TA-AATTCAAAGTTGTGCTCT
* * * * ** *
577938 TAAATAAGACAAACACGAATACTCA-T-ACTACTCC
124 TAAATGAGACAAACATGGATTCT-AGTAAGGA-TCT
* * * * * * ** *
577972 CCATTCATTTCAGGATTAGGCACCGTAAACATAGTCTTCTTTTAAGGATACATGATATTGATGCT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
* * * * * *
578037 TCGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTTTCTAAATTCTAAGTTCGTGC-CTCAAAT
66 TTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTAAAT
* *
578101 GAGACAAACATGGATTCTAGCAAGGATAT
129 GAGACAAACATGGATTCTAGTAAGGATCT
* * * * * * *
578130 TCATTCATTTCATGATTAGGCTCTATAAACGCATTCTCCTCATCAGGATGCATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-GC
** * * ** *** * *
578195 TTTCTTTTGCATCGAAATC-CTTTCCTTGCC-TTATTTTCCATAAAATCAAAGTT-TGCACTTTA
65 TTTGGTTTGCA-AGAAA-CGCTTT-CTTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTC-TTA
** * *
578257 AATGAGACATGCATTGATTCTCA-TAA-CAGTCT
126 AATGAGACAAACATGGATTCT-AGTAAGGA-TCT
* * ** * * * * * *
578289 CCATTCTTTCCAAGATTAGAAACCAAAAACACAATC-CTTTCATTAGGATACAAGACATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * * * *
578353 GTTGGTGTCGCAAGAGAA-GCTTGCCTTTCC-CC-TGTTATTGATAGAA-TCAAAGTTG-CCTCT
65 TTTGGT-TTGCAAGA-AACGCTT-TCTTCCCACCAT-TTTTTG-TA-AATTCAAAGTTGTGCTCT
* * * * **
578413 TAAATAAGACAAACACGAATACTCA-T-ACTA-CT
124 TAAATGAGACAAACATGGATTCT-AGTAAGGATCT
* * * * * ** *
578445 CCCTATTCATTTT-AGGATTAGGCACCGTAAACATAGTCTTCTTTTAAGGATACATGATATTGAT
1 -CC-ATTC-TTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT
** * * * **
578509 GCTTTGGTTTCGCAAGATGCGCTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCATGC-CCCA
63 GCTTTGGTTT-GCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTT-GTGCTCTTA
* *
578573 ATTGAGACAAACATTGATTCTAGTAAGGATCT
126 AATGAGACAAACATGGATTCTAGTAAGGATCT
* * * * *
578605 TCATTCATTTCATGATTAGGCACAATAAACACATTCTCCTCATCAAGATGCATGATATTGATGGT
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGAT-G-
* ** * ** *** * * *
578670 TTTTTTTTTGCATAGAAATC-TTTTCTTCGCC-TTATTTTCCATAAAATCAAAGTT-TGCACTGC
64 CTTTGGTTTGCA-AGAAA-CGCTTTCTTC-CCACCATTTTTTGTAAATTCAAAGTTGTGCTCT-T
** * * *
578732 AAATGAGACATGCATTGATTCTCGTAA-CAGTCT
125 AAATGAGACAAACATGGATTCTAGTAAGGA-TCT
* * ** * * * *
578765 CCATTCTTTCCAAGATTAGAAACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGC
1 CCATTCTTTTCATGATTAGGCACCATAAACACATTCTC-CTCATCAGGATACATGATATTGATGC
* * * * * * * *
578829 GTTGGTGTGGCAAAAGAAC-CTTGTCTTTCCACC-GTTATTGATAAAATCAAAGTTG-CCTCTTA
65 TTTGGT-TTGCAAGA-AACGCTT-TCTTCCCACCATTTTTTG-TAAATTCAAAGTTGTGCTCTTA
** * * * ** *
578891 AAAAAGACAAACACGAATACTCA-T-ACTACTCC
126 AATGAGACAAACATGGATTCT-AGTAAGGA-TCT
* * * * * *
578923 CCATTCTTTTC-TGGATTAGGCACCATAAACATAGTCTTCTCAT-ATGGATACATGACATTAACG
1 CCATTCTTTTCAT-GATTAGGCACCATAAACACATTCTCCTCATCA-GGATACATGATATTGATG
*
578986 CTTTGGTTTCGCAAGATACGCTTTCTTCCCACCA
64 CTTTGGTTT-GCAAGAAACGCTTTCTTCCCACCA
579020 ATTTGTGGAA
Statistics
Matches: 9678, Mismatches: 3054, Indels: 1968
0.66 0.21 0.13
Matches are distributed among these distances:
146 18 0.00
147 78 0.01
148 5 0.00
151 1 0.00
152 1 0.00
153 1 0.00
154 3 0.00
155 11 0.00
156 136 0.01
157 869 0.09
158 4255 0.44
159 3340 0.35
160 701 0.07
161 131 0.01
162 18 0.00
164 55 0.01
165 40 0.00
166 13 0.00
167 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (157 bp):
CCATTCTTTTCATGATTAGGCACCATAAACACATTCTCCTCATCAGGATACATGATATTGATGCT
TTGGTTTGCAAGAAACGCTTTCTTCCCACCATTTTTTGTAAATTCAAAGTTGTGCTCTTAAATGA
GACAAACATGGATTCTAGTAAGGATCT
Found at i:580667 original size:159 final size:156
Alignment explanation
Indices: 579233--583580 Score: 1329
Period size: 159 Copynumber: 27.5 Consensus size: 156
579223 GATTCCCGTA
* * * ** *
579233 ACCAAAAACACATTC-CCTTCATTAAGATACATGACATTGATGCTTT-GTTGTCACAAGAGAAGC
1 ACCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTT-TTGCAAGA-AATC
* * *
579296 TTTTCTTTCCAACGTTA--TTGATAAAATCAAAGTTTGC-CTCCTAAATAAGGCAAAC-TTGAAT
63 TTTTCTTTCC--C-TTATTTTG-TAAAATCAAAGTTTGCACT-TTAAATGAGACAAACATTG-AT
* * ** * * * *
579357 ACTCATGCTAA-TCCCCATACCTTTCAAGAATAGGC
122 TCTCGT-AAAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * * * *
579392 ACCGTAAACATAGTCTTCCT-A-TACGGATGCAGGATATTGATGATTTGGTTTCGCAAGAAATGC
1 ACCATAAACACATTC-TCCTCATTA-GGATACATGATATTGATGCTTTGGTTTTGCAAGAAAT-C
* * * * * *
579455 -TTT-TTTCCCATCAATTTTTGTAAATTCTAAGTCCGTGC-C-TCAAATGAGACAAACATGGATT
63 TTTTCTTTCCC-T-TA-TTTTGTAAAATCAAAGT--TTGCACTTTAAATGAGACAAACATTGATT
* * * * *
579516 CTAGT-AAGGATCTTCATTCATTTCATGATTAGGC
123 CTCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGC
* * * * * * ** *
579550 ACTATAAACACATTCTCCTCATCAAGATGCACGATATTGATGGTTTTCTTTTGCATGGAAATCTT
1 ACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAATCTT
* * **
579615 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
65 TTCTTTCCCTTATTTT--GTAAAATCAAAGTTTGCACTTTAAATGAGACAAACATTGATTCTCGT
* * *
579680 AACAGTCTCCATTCTTTTCAAGATTTGGA
128 AAAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * * *** *
579709 ACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGGTTTGGTGTCATAAGAGAAGC-
1 ACCATAAACACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGA-AATCT
* * * * * *
579772 TTGCTTTCCACCGTTA--TAGATAGAATCAAAG-TTG-TCTCTTAAATAAGACAAACA-TGAATA
64 TTTCTTT-C-CC-TTATTTTG-TAAAATCAAAGTTTGCACT-TTAAATGAGACAAACATTG-ATT
* * * * *
579832 CTCATACTAA-TCCCCATTTTTTTC-TGTATTAGGC
123 CTCGTA-AAAGTCTCCATTCTTTTCAAG-ATTAGGC
* * * * * * * *
579866 ACTATAAACATAGTCTACTTA-TACGGGTACATGATATTGATGCTTTGGTTTCGCAAGATATGCT
1 ACCATAAACACATTCTCCTCATTA-GGATACATGATATTGATGCTTTGGTTTTGCAAGAAAT-CT
* ** * * *
579930 TTT-TTCCCACCAATTTGTGTAAAGT-ATGAG-TT-CA-TTGCTCAAATGAGACAAACATGGATT
64 TTTCTTTCC-CTTATTT-TGTAAAATCA-AAGTTTGCACTT--T-AAATGAGACAAACATTGATT
* ** * * *
579990 CTTGT-AGGGATCTTCATTCATTTCATGATTAGGC
123 CTCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGC
* * * * * * * ** *
580024 TCTATAAACACATTCTCCGCTTTAGGGTAAATGATATTGATGGTTTTTTTTTGCATGAAAATCTT
1 ACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAG-AAATCTT
* * * * * * ** * *
580089 TTGTTTGCCTTATTTTTCCTAAAATCAAAGTTTGTATTTTAAATGATACATGCATTGACTCTTGT
65 TTCTTTCCCTTA-TTTT-GTAAAATCAAAGTTTGCACTTTAAATGAGACAAACATTGATTCTCGT
580154 AAAAGTCTCCATTCTTTTCAAGA-T-GGC
128 AAAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * * * * * * * *
580181 GAACA-AAAAACATATTTCCTTCATTAGGATACAAGACAATGATGCTTTGCTGTCGCAAAAGAAC
1 -ACCATAAACACAT-TCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGA-AAT
* * * * * *
580245 CTTTACTTTCCAACGTCA-TTTATAAAATCAAAGTCTGC-CTCTTAAAT-AAAGCAAA-TTTGAA
62 CTTTTCTTTCC--C-TTATTTTGTAAAATCAAAGTTTGCACT-TTAAATGAGA-CAAACATTG-A
* * * * *
580306 TACTCATACTAA-TCCCCATTCCTTTCAAGATTAGGC
121 TTCTCGTA-AAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * * * * * * **
580342 ACTATAAACATAGTCTTCTTA-TACGGATACAGGATATTGATGATTTGGTTTCGTAAGAAA-CGC
1 ACCATAAACACATTCTCCTCATTA-GGATACATGATATTGATGCTTTGGTTTTGCAAGAAATCTT
* * * * * * *
580405 TT-TTTCCCATCAATTTTTTTAAATTCTAAGTTTATGC-C-TCAAATGAGAGAAACATGGATTCT
65 TTCTTTCCC-T-TA-TTTTGTAAAATCAAAG-TT-TGCACTTTAAATGAGACAAACATTGATTCT
* * * * * *
580467 AGT-AAGGATCTTCATGCATTTCATGATTAGGC
125 CGTAAAAG-TCTCCATTCTTTTCAAGATTAGGC
* ** *
580499 ACCATAAACACATTCTCCTCATTAGGATAAATGATATTGATGCTTTTCTTTTGCATGGAAATCTT
1 ACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAATCTT
* **
580564 TTCTTTGCCTTATTTTCCGTAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
65 TTCTTTCCCTTATTTT--GTAAAATCAAAGTTTGCACTTTAAATGAGACAAACATTGATTCTCGT
*
580629 AAAAGTCTCCATTCTTTTCAAGATTAGGA
128 AAAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * * * *
580658 ACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGAGGCCTTGGTGTTGCAAGAGAAGCT
1 ACCATAAACACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGA-AATCT
* * * * *
580722 TGTCTTTCCACCGTTA--TTG-ACCGAATCAAAGTTGTG-TC-TTAAATAAGACAAA-AATGAAT
64 TTTCTTT-C-CC-TTATTTTGTA--AAATCAAAGTT-TGCACTTTAAATGAGACAAACATTG-AT
* * * * * *
580781 ACTCATACTAA-TCCCCATTCTGTTCTAGATTAGGC
122 TCTCGTA-AAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * * * * * * **
580816 ACAATAAACATAGTCTTCTTA-TACGGATACATGATGTTGAAGCTTTGGTTTCGCATGATACGCT
1 ACCATAAACACATTCTCCTCATTA-GGATACATGATATTGATGCTTTGGTTTTGCAAGA-AATCT
* * ** * * * *
580880 TTT-GTCCCACCAATTTGTGTAAATTCTAAGTTCGTGC-C-TCAAATGAGACAAACATGGATTCT
64 TTTCTTTCC-CTTATTT-TGTAAAATCAAAGTT--TGCACTTTAAATGAGACAAACATTGATTCT
* ** * * *
580942 AGT-ATGGATCTTCATTCATTTT-ATGATTTGGC
125 CGTAAAAG-TCTCCATTC-TTTTCAAGATTAGGC
* * * * * ** *
580974 CCCATAAACACATTCTCCTCATCAGGATGCATGATATTAATGGTTTTCTTTTGCATGGAAATCTT
1 ACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAATCTT
* * * * * ** *
581039 TTCATTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAGTGAGACATGCATTGATTCACGT
65 TTCTTTCCCTTATTTT--GTAAAATCAAAGTTTGCACTTTAAATGAGACAAACATTGATTCTCGT
* *
581104 AAAAGTCTCCATTCCTTTCAAGATTAGGA
128 AAAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * *
581133 ACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAGAAGCT
1 ACCATAAACACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGA-AATCT
* * * * * * * * * *
581197 TGTATTTCCAC-CATGATTGATAGAATCAAATTTTGC-CTCTTAAATAAGCCAAACA-GGAATAC
64 TTTCTTTCC-CTTAT-TTTG-TAAAATCAAAGTTTGCACT-TTAAATGAGACAAACATTG-ATTC
* ** * *
581259 TCATACTAGTCCCCATTCTTTTCTAGATTAGGC
124 TCGTAAAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * * *
581292 ACCATAAACATAGTCTTCTTA-TACGGATACATGATATTGATGCTTTGGTTTCGCAAGATATGC-
1 ACCATAAACACATTCTCCTCATTA-GGATACATGATATTGATGCTTTGGTTTTGCAAGAAAT-CT
* ** * * * * *
581355 TTTCTTCCCACCAATTTTTGTAAATTCTAAGTCCGTGC-C-TCAAATGAGACAAACATGGATTCT
64 TTTCTTTCC-CTTA-TTTTGTAAAATCAAAGT--TTGCACTTTAAATGAGACAAACATTGATTCT
* ** * * * ** *
581418 AGT-ATGGATCTTCAATCATTTCGTGATTAAGC
125 CGTAAAAG-TCTCCATTCTTTTCAAGATTAGGC
** * * ** *
581450 ACCATAAACACATTCTCCTCAGCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTT
1 ACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAATCTT
* * ** ** * *
581515 TTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTGCTTTAAATGAGACATGCATTGATTCACAT
65 TTCTTTCCCTTATTTT--GTAAAATCAAAGTTTGCACTTTAAATGAGACAAACATTGATTCTCGT
*
581580 AAAAGTCTCCATTCTTTTCTAGATTAGG-
128 AAAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * * *
581608 AGCCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
1 A-CCATAAACACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGA-AATC
* ** * ** * * * * *
581672 TTGTCTTTCCACCGAGATTAATAGAATCAAAGTTTGC-CTCTTAAATAAGCCAAACA-GGAATAC
63 TTTTCTTTCC-CTTA-TTTTGTAAAATCAAAGTTTGCACT-TTAAATGAGACAAACATTG-ATTC
** *
581735 TTATAGTAAAG-C-CCATTCTTTTCTAGATTAGGC
124 TCGTA--AAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * *
581768 ACCATAAA-ACATAGTCTTCTTA-TACGGATACATAATATTGATGCTTTGGTTTCAG-AAGATAC
1 ACCATAAACACAT--TCTCCTCATTA-GGATACATGATATTGATGCTTTGGTTT-TGCAAGA-AA
* * * * * * * **
581830 GCTTTTGTCCTACC-AATTTGTGTAAATTCTAAA-TTCGTGC-C-TTAAATGAGATAAACAAGGA
61 TCTTTTCT-TTCCCTTATTT-TGTAAAATC-AAAGTT--TGCACTTTAAATGAGACAAACATTGA
* ** * * ** *
581891 TTCTAGT-ATGGATCTTCATTCATTTCTTGACTAGGC
121 TTCTCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGC
* * ** * * * ** *
581927 ACCATAAACACAATCTCCGCAACAGGATGCATGATATTCATGGTTTTCTTTTGCATGGAAATCTT
1 ACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAATCTT
* * **
581992 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGT
65 TTCTTTCCCTTATTTT--GTAAAATCAAAGTTTGCACTTTAAATGAGACAAACATTGATTCTCGT
* *
582057 AAAAGACTCCATTCCTTTCAAGATTAGG-
128 AAAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * * * * * * *
582085 AACAAAAAAACATTC-CTTTCATTAGTATACATAACATTGATGCTTTGGTGTCGCAAGAGAAGCT
1 ACCATAAACACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGA-AATCT
* * * * * *
582149 TGTCTTTCCACCGTTA--TTGATAGAATCAAAG-TTG-TCTCTTAAATAAGACAAACA-AGAATA
64 TTTCTTT-C-CC-TTATTTTG-TAAAATCAAAGTTTGCACT-TTAAATGAGACAAACATTG-ATT
* * * **
582209 CTCATACTAA-TCCCCATTCTTTTCTGGATTAGGC
123 CTCGTA-AAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * * * * * * *
582243 ACCATAAACATAGTCTTCTCA-AACGGATACATGACATTAACGCTTTGGTTTCGCAAGATA-CGC
1 ACCATAAACACATTCTCCTCATTA-GGATACATGATATTGATGCTTTGGTTTTGCAAGAAATC-T
* ** * * * * *
582306 TTTCTTCCCACCAATTTGTGGAAAGT-ATGAG-TT-CA-TTGCTCAAATGAGACAAAGATGGATT
64 TTTCTTTCC-CTTATTT-TGTAAAATCA-AAGTTTGCACTT--T-AAATGAGACAAACATTGATT
* ** * * *
582367 CTTGT-AGGGATCTTCATTCATTTCATGATTAGGC
123 CTCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGC
* * * * * * * ** *
582401 ACTATAAAGACATTCTCCGCTTTAGGATAAATGATATTTATGGTTTTCTTTTGCATGGAAATCTT
1 ACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAATCTT
** * * * * **
582466 TTCTTAGCCTTATTTTCCTTAAAATCAAAGCTTGTACTTTAAATTAGACATGCATTGATTCTCGT
65 TTCTTTCCCTTATTTT--GTAAAATCAAAGTTTGCACTTTAAATGAGACAAACATTGATTCTCGT
* *
582531 AAGAGTCTCCATTCTTTTCAAGATT-GTGA
128 AAAAGTCTCCATTCTTTTCAAGATTAG-GC
* * ** *
582560 ACCAAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTT-GTTGTCACAAGAGAAGC
1 ACCATAAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTT-TTGCAAGA-AATC
* * *
582623 TTTTCTTTCCAACGTTA--TTGATAAAATCAAAGTTTGC-CTCTTACATAAGGCAAAC-TTGAAT
63 TTTTCTTTCC--C-TTATTTTG-TAAAATCAAAGTTTGCACT-TTAAATGAGACAAACATTG-AT
* * ** * * *
582684 ACTCATGCTAA-TCCCCATTCCTTTCAAGAATAGGC
122 TCTCGT-AAAAGTCTCCATTCTTTTCAAGATTAGGC
** * * * * * * *
582719 ACCGCAAACATAGTCTTCCT-A-TACGGATATAGGATATTCATGATTTGGTTTCGCAAGAAATGC
1 ACCATAAACACATTC-TCCTCATTA-GGATACATGATATTGATGCTTTGGTTTTGCAAGAAAT-C
* * * * * *
582782 -TTT-TTTCCCATCAATTTTTGTAAATTCTAAGTTCGTG-GC-TCAAATGAGACAAACATGGATT
63 TTTTCTTTCCC-T-TA-TTTTGTAAAATCAAAGTT--TGCACTTTAAATGAGACAAACATTGATT
* * * * *
582843 CTAGT-AAGGATCTTCATTCATTTCATGATTAGGC
123 CTCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGC
* * * * * ** * *
582877 ACTATAAACACATTCTCCTCATTCGGAAAAATGATATTGATGGTTTTTTTTTTGCATGGACATCT
1 ACCATAAACACATTCTCCTCATTAGGATACATGATATTGAT-GCTTTGGTTTTGCA-AGAAATCT
* * * **
582942 TTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTCCACTTTAAATGAGACATGCATTGATTCTCG
64 TTTCTTTCCCTTATTTT--GTAAAATCAAAGTTTGCACTTTAAATGAGACAAACATTGATTCTCG
*
583007 TAAAAGTCTCCATTCTTTTCAAGATTAGGA
127 TAAAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * * * ** * *
583037 ACCAAAAACGCATTC-CTTTCATTTGGATACATGACATTGATGCGTTGGGGTCGCAAGAGAAGCT
1 ACCATAAACACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGA-AATCT
* * ** * * * *
583101 TGTC--T-ACAGATATTGATAGAATCAAAG-TTG-TCTCTTAAAT-ATGACAAACA-TGAATACT
64 TTTCTTTCCCTTATTTTG-TAAAATCAAAGTTTGCACT-TTAAATGA-GACAAACATTG-ATTCT
* * * *
583159 CATACTAA-TCCCCATTCTTTTCTAGATTAGGC
125 CGTA-AAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * *
583191 ACCATAAACATAGTCT--TCTTCTACGGATACATGATATTGATGCTTTGGTTTCGCAAGATATGC
1 ACCATAAACACATTCTCCTCAT-TA-GGATACATGATATTGATGCTTTGGTTTTGCAAGAAAT-C
* * ** * * * * * *
583254 -TTTCGTCCCACCAATTTGTGTAAATTCTAAG-TT-CAGGCCTCAAATGAGACAAACATGGATAC
63 TTTTCTTTCC-CTTATTT-TGTAAAATCAAAGTTTGCA--CTTTAAATGAGACAAACATTGATTC
* ** * * *
583316 TAGT-ATGGATCTTCATTCATTTCATGATTAGGC
124 TCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGC
* * * * * * ** * * *
583349 ACTATAAACACATTCCCCTCATCAAGATGCATGATATTGATGGTTTTCTTTCGCATGGAAATTTT
1 ACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCA-AGAAATCTT
* * * ** *
583414 TTCTTTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTGAATGAGACATGCATTGATTCTCAT
65 TTCTTTCCCTTATTTT--GTAAAATCAAAGTTTGCACTTTAAATGAGACAAACATTGATTCTCGT
* * *
583479 AACAGTCTCCATTCTTTTCAAGATTTGGA
128 AAAAGTCTCCATTCTTTTCAAGATTAGGC
* * * * *
583508 ACCA-AAAGCACATT-TCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGC
1 ACCATAAA-CACATTCTC-CTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGA-AATC
*
583571 TTGTCTTTCC
63 TTTTCTTTCC
583581 ACCGTTATAG
Statistics
Matches: 2973, Mismatches: 923, Indels: 586
0.66 0.21 0.13
Matches are distributed among these distances:
152 3 0.00
153 10 0.00
154 86 0.03
155 26 0.01
156 38 0.01
157 334 0.11
158 935 0.31
159 1250 0.42
160 232 0.08
161 47 0.02
162 12 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.35
Consensus pattern (156 bp):
ACCATAAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAATCTTT
TCTTTCCCTTATTTTGTAAAATCAAAGTTTGCACTTTAAATGAGACAAACATTGATTCTCGTAAA
AGTCTCCATTCTTTTCAAGATTAGGC
Found at i:584984 original size:159 final size:157
Alignment explanation
Indices: 583867--587885 Score: 1017
Period size: 159 Copynumber: 25.4 Consensus size: 157
583857 ATGGAAATCT
** * * **
583867 TTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAAGGAGACATGCATTGATTCTC
1 TTTTCTTTGCCTTATTTT-GATAAAATCAAAGTTTG-CCTTTAAATGAGACAAACATTGATTCTC
* * *
583932 ATAAAAGTGTCCATTCTTTTCAAGATT-GCGAACCAAAAACACATTCCCTTCATTAGGATACATG
64 GTAAAAGTCTCCATTCTTTTCAAGATTAG-GAACCAAAAACACATTCCTTTCATTAGGATACATG
* * *
583996 ACATTGATGCTTCGGTGTTGTAA-ATGAAGC
128 ATATTGATGCTTTGGTGTTGCAAGA-GAAGC
* * * * *
584026 TTTTCTTT-CCAATGTTATTGATAAAATCAAAGTTTGCCTCTTAAATAAGACAAACA-AGAATAC
1 TTTTCTTTGCC-TTATT-TTGATAAAATCAAAGTTTGCCT-TTAAATGAGACAAACATTG-ATTC
* * * * * * * *
584089 TCATACTAA-TC-CTCATTCTTTTCTAGATTAGGCACCATAAACATAGT-C-TTCCTATACGGAT
62 TCGTA-AAAGTCTC-CATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCAT-TA-GGAT
** * * * *
584150 ACATGGCATTAATGCTTTGCT-TTCGCAAGATACGC
123 ACATGATATTGATGCTTTGGTGTT-GCAAGAGAAGC
** ** * * * * *
584185 -TTTCTTCCCACCAATTTGTG-TAAAGT-ATGAG-TT-CATTACTCAAATGAGACAAACATGGGT
1 TTTTCTTTGC-CTTATTT-TGATAAAATCA-AAGTTTGCCTT--T-AAATGAGACAAACATTGAT
* ** * * ** ** * * *
584245 TCTTGT-AGGGATCTTCATTCATTTCGTGATTAGGCTCTATAAACACATTCTCCGTT--TTAGGA
60 TCTCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGAACCAAAAACACA-T-TCCTTTCATTAGGA
* * ** * ** * *
584307 TAAATGATATTGATGGTTTTTTTTTGCATTAAAATC
122 TACATGATATTGATGCTTTGGTGTTGCAAGAGAAGC
** * * **
584343 TTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGATACATGCATTGATTCTC
1 TTTTCTTTGCCTTATTTT-GATAAAATCAAAGTTTG-CCTTTAAATGAGACAAACATTGATTCTC
* * * *
584408 GTAAAAGTCTCCATTCTTTTCAAGA-TGGCGAACAAAAAACATATTCCCTTCATTAGGATACATG
64 GTAAAAGTCTCCATTCTTTTCAAGATTAG-GAACCAAAAACACATTCCTTTCATTAGGATACATG
* * * * *
584472 ACAATGATGCTTTGTTGTCGCAAGAGAACC
128 ATATTGATGCTTTGGTGTTGCAAGAGAAGC
* * * * * * *
584502 TTTTCTTT-CC-AACGTCATTGATAAAATCAAAGTCTCCCTGTTAAAT-AAAGCAAA-TTTCAAT
1 TTTTCTTTGCCTTA--T-TTTGATAAAATCAAAGTTTGCCT-TTAAATGAGA-CAAACATT-GAT
* * * * * * * *** * *
584563 ACTCATACTAA-TCCCCATTCCTTTCAGGATTAGGCACTGTAAACATAGTATTC-TT-A-TACGG
60 TCTCGTA-AAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACA-T-TCCTTTCATTA-GG
* * * *
584624 ATACAGGATATTGGTGATTTGGT-TTCGTAAGA-AACGC
121 ATACATGATATTGATGCTTTGGTGTT-GCAAGAGAA-GC
* * * * * * * *
584661 --TT-TTTCCCATCAATTTT-TTAAAATTCTAAGTTTGTGCC-TCAAATGAGAGAAATATGGATT
1 TTTTCTTTGCC-T-TATTTTGATAAAA-TCAAAG-TT-TGCCTTTAAATGAGACAAACATTGATT
* * * * * * * * * *
584721 CTAGT-AAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATT-CTCCTCATTAGGGTA
61 CTCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCT-TTCATTAGGATA
* * * ** * *
584784 AAAGATATTGATGGTTTTCT-TATGCATG-GAAATC
124 CATGATATTGATGCTTTGGTGT-TGCAAGAG-AAGC
** * **
584818 TTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGCACTTTAAAAGAGACAGGCATTGATTCTC
1 TTTTCTTTGCCTTATTTT-GATAAAATCAAAGTTTGC-CTTTAAATGAGACAAACATTGATTCTC
584883 GTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
64 GTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
* *
584948 CATTGATGCTTTGGTGTTACAAGAGAAGC
129 TATTGATGCTTTGGTGTTGCAAGAGAAGC
* * * * * * * ** *
584977 TTGTCTTTCCACCGTGA--TTGATAGAATCAAAGTTTGCCTCTTAACTAAGCCAAAC-GGGAATA
1 TTTTCTTT--GCC-TTATTTTGATAAAATCAAAGTTTGCCT-TTAAATGAGACAAACATTG-ATT
* * * * * * * * *
585039 CTCATACTAA-TCCCCATTCTTTTCTAGATTAGGCACCATAAACATAGT-C-TTCTTATACGGAT
61 CTCGTA-AAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCAT-TA-GGAT
* * * *
585101 ACATGATATTGGTGCTTTGGT-TTCGCATGATACGC
123 ACATGATATTGATGCTTTGGTGTT-GCAAGAGAAGC
* ** ** * * * * **
585136 TTTT-GTCCCACCAATTTGTG-TAAATTCTAAGTTCGTGCC-TCAAATGAGACAATCAAGGATTC
1 TTTTCTTTGC-CTTATTT-TGATAAAATCAAAGTT--TGCCTTTAAATGAGACAAACATTGATTC
* ** * * * * * *
585198 TAGT-ATGGATCGT-CTTTCATTTCTC-A-ACTAGGCA-CTATAACACAATCTCC--TCATCAGG
62 TCGTAAAAG-TC-TCCATTC-TTT-TCAAGATTAGGAACCAAAAACAC-AT-TCCTTTCATTAGG
* * ** * * *
585256 ATGCATGATATTGATGGTTTTCTTTTGCATTGA-AATC
121 ATACATGATATTGATGCTTTGGTGTTGCA-AGAGAAGC
* * **
585293 TTTTCATTGCCTTATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTC
1 TTTTCTTTGCCTTATTTT-GATAAAATCAAAGTTTGC-CTTTAAATGAGACAAACATTGATTCTC
585358 GTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
64 GTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
* *
585423 CATTGATGCTTTGGTGTCGCAAGAGAAGC
129 TATTGATGCTTTGGTGTTGCAAGAGAAGC
* * * * * * * *
585452 TTGTCTTTCCACCGTGA--TTGATAGAATCAAAG-TTGTCAC-TTAAATAAGACAAACAGTAATA
1 TTTTCTTT--GCC-TTATTTTGATAAAATCAAAGTTTG-C-CTTTAAATGAGACAAACATTGATT
* * * * ** * * * * *
585513 CTCATATTAA-TCCCCATTCTTTCCTGGATTAGGCACCATAAATC-GATT-C-TTCTTATACAGA
61 CTCGTA-AAAGTCTCCATTCTTTTCAAGATTAGGAACCA-AAAACACATTCCTTTCAT-TA-GGA
* * * * *
585574 TACCTAATATTGATGTTTTGGT-TTCGCAAGATATG-
122 TACATGATATTGATGCTTTGGTGTT-GCAAGAGAAGC
* * ** * * * *
585609 TTTTC-GTCCCACCAGTTTGTG-T-AAATTATAAGTCCGTGCC-TCAAATGAGACAAACATGGAT
1 TTTTCTTTGCC-TTA-TTT-TGATAAAATCA-AAGT--TTGCCTTTAAATGAGACAAACATTGAT
* ** * * * * * * *
585670 TCTAGT-ATGGATCTTCATTCATTTCATGATTAGGAACTATAAACACATT-CTGCTCATCAGGAT
60 TCTCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCT-TTCATTAGGAT
* * * * ** * * *
585733 GCACGATGTTGATGGTTTTCTTTTGCATG-GAAATC
123 ACATGATATTGATGCTTTGGTGTTGCAAGAG-AAGC
* ** **
585768 TTTTCTTAGCCTTATTTTCCTTAAAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTC
1 TTTTCTTTGCCTTATTTT-GATAAAATCAAAGTTTGC-CTTTAAATGAGACAAACATTGATTCTC
*
585833 GTTAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
64 GTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
* *
585898 CATTGATGCTTTGGTGTCGCAAGAGAAGC
129 TATTGATGCTTTGGTGTTGCAAGAGAAGC
* * * * * *
585927 TTGTCTTTCCACCGTGA--TTGATAGAATCAAAG-TTGTCAC-TTAAATAAGACAAACA-GGAAT
1 TTTTCTTT--GCC-TTATTTTGATAAAATCAAAGTTTG-C-CTTTAAATGAGACAAACATTG-AT
* * * * ** * * ** * *
585987 ACTCATACAAA-TCCCCATTCTTTCCTTGATTAGGCACCATAAAC-C-TTGTTTTCTTATACAGA
60 TCTCGTA-AAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCAT-TA-GGA
* * *
586049 TACATGATATTGATGTTTTGGT-TTCGCAAGATATG-
122 TACATGATATTGATGCTTTGGTGTT-GCAAGAGAAGC
* * ** * * * *
586084 TTTTC-GTCCCACCAGTTTGTG-T-AAATTATAAGTCCGTGCC-TCAAATGAGACAAACATGGAT
1 TTTTCTTTGCC-TTA-TTT-TGATAAAATCA-AAGT--TTGCCTTTAAATGAGACAAACATTGAT
* ** * * * * * * * * *
586145 TCTAGT-ATGGATTTTCATTCATTTCATGATTAGAAACTATAAACACATT-CTCCTCATCAGGAT
60 TCTCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCT-TTCATTAGGAT
* * * ** * * *
586208 GCATGATGTTGATGGTTTTCTTTTGCATG-GAAATC
123 ACATGATATTGATGCTTTGGTGTTGCAAGAG-AAGC
* * **
586243 TTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTTTCTCTTTAAATGAGACATGCATTGATTCTC
1 TTTTCTTTGCCTTATTTT-GATAAAATCAAAGTTTGC-CTTTAAATGAGACAAACATTGATTCTC
* *
586308 GTAAAAGTCTCCATTCTTTTCAAGATT-GCAAACCAAAAACACATTCCCTTCATTAGGATACATG
64 GTAAAAGTCTCCATTCTTTTCAAGATTAG-GAACCAAAAACACATTCCTTTCATTAGGATACATG
* **
586372 ATATTGATGCTTTGTTGTCACAAGAGAAGC
128 ATATTGATGCTTTGGTGTTGCAAGAGAAGC
* *
586402 TTTTCTTT-CC-AACGTTATTGATAAAATCAAAGTTTGCCTCTTAAATAAGGA-AAAC-TTGAAT
1 TTTTCTTTGCCTTA--TT-TTGATAAAATCAAAGTTTGCCT-TTAAATGA-GACAAACATTG-AT
* * * * * ** * *
586463 ACTCATACTAA-TC-CTCATTCCTTTT-AGGATTAGGCACCGTAAACATAGTATTC-TT-A-TAC
60 TCTCGTA-AAAGTCTC-CATT-CTTTTCAAGATTAGGAACCAAAAACACA-T-TCCTTTCATTA-
* *
586522 GGATACAGGATATTGATGATTTGGT-TTCGCAAGA-AACGC
119 GGATACATGATATTGATGCTTTGGTGTT-GCAAGAGAA-GC
** * * * *
586561 -TTT-TTT-CCTATCAATTTTTTTAAATTCTAAGTTCGTGCC-TCAAATGAGACAAACATGGATT
1 TTTTCTTTGCCT-T--ATTTTGATAAAATCAAAGTT--TGCCTTTAAATGAGACAAACATTGATT
* * * * * * * * *
586622 CTAGT-AAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATT-CTTCTCATTCGGATA
61 CTCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTT-TCATTAGGATA
* * ** * * *
586685 AATGATATTGATGATTTTCTTTTGCATG-GAAATC
124 CATGATATTGATGCTTTGGTGTTGCAAGAG-AAGC
* * * *
586719 TTTTCATTGCCATATTTTCCATAAAATCAAAGTTTGCACTTTAAATGAGACATACATTGATTCTC
1 TTTTCTTTGCCTTATTTT-GATAAAATCAAAGTTTGC-CTTTAAATGAGACAAACATTGATTCTC
*
586784 GTTAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
64 GTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
* * *
586849 CATTGATGCTTTGGTGTCGCAGGAGAAGC
129 TATTGATGCTTTGGTGTTGCAAGAGAAGC
* * * * * * *
586878 TTTTCTTTCCACCGTTA--TAGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACA-CGAATA
1 TTTTCTTT--GCC-TTATTTTGATAAAATCAAAGTTTGCCT-TTAAATGAGACAAACATTG-ATT
* * * ** * * * * *
586939 CTCATACTAA-TCCCCATT-TTTTCTGGATTAGGCACCATAAACATAGT-CTGCTT-A-TACAGA
61 CTCGTA-AAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCT--TTCATTA-GGA
* *
586999 TACATGATATTGATGATTTGGT-TTCGTAAGA-AACGC
122 TACATGATATTGATGCTTTGGTGTT-GCAAGAGAA-GC
* * * ** * *
587035 -TTT-TTT-CCAGTCAATTTGTG-TAAATTCTAAGTTCGTGCC-TCCAATGAGAGAAACATGGAT
1 TTTTCTTTGCC--T-TATTT-TGATAAAATCAAAGTT--TGCCTTTAAATGAGACAAACATTGAT
* * * * * * * * * * * *
587095 TCTAGT-AAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACGTT-CTCCTCATCAGCAT
60 TCTCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCT-TTCATTAGGAT
* * ** * * *
587158 GCATGATATTGATGGTTTTTTTTTGCATG-GAAATC
123 ACATGATATTGATGCTTTGGTGTTGCAAGAG-AAGC
* * * ** **
587193 TTTTCTTTGCCTTATTTTCCATAAAATCTATGTTTAAACTTTAAATGAGACATGCATTGATTCTC
1 TTTTCTTTGCCTTATTTT-GATAAAATCAAAGTTT-GCCTTTAAATGAGACAAACATTGATTCTC
* * *
587258 GTAAAAGTCTCCACTCGTTTCAAGATTAGGAACCAAAAACACATTCCTTTCCTTAGGATACATGA
64 GTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGA
* *
587323 CATTGATGCCTTGGT-TTCGCAAGAGAAGC
129 TATTGATGCTTTGGTGTT-GCAAGAGAAGC
** * * * * * *
587352 TTTTCTTT-CCACCATTATAGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACA-CGAATAC
1 TTTTCTTTGCC-TTATT-TTGATAAAATCAAAGTTTGCCT-TTAAATGAGACAAACATTG-ATTC
* * * ** * * * *
587414 TCATAATAA-TCCCCATTTTTTTCTGGATTAGGCACCATAAACATCGTCTGC-TT-A-TACGGAT
62 TCGTAA-AAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACA-CAT-TCCTTTCATTA-GGAT
* * * * *
587475 ACAAGATATTAAAGCTTTGGT-TTCGCAAGATACGC
123 ACATGATATTGATGCTTTGGTGTT-GCAAGAGAAGC
** ** * ** * *** * **
587510 -TTTCTTCCCACCAATTTGTGCAGAGTATGAGTTTATTG-C-TCAAATGAGACAAACAGGGATTC
1 TTTTCTTTGC-CTTATTT-TG-ATAAAATCAAAGT-TTGCCTTTAAATGAGACAAACATTGATTC
* ** * * ** ** * * * ** * *
587572 TTGT-AGGGATCTTCATTCATTTCGTGATTAGCCACTATAAACCCATT-CTCCGCTTTAGGATAA
62 TCGTAAAAG-TCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCT-TTCATTAGGATAC
* * ** * * * *
587635 ATGATATTCATGGTTTTCTTTTGTATG-GAAATC
125 ATGATATTGATGCTTTGGTGTTGCAAGAG-AAGC
* * ** * * **
587668 TTTTCTTAGCCTTCTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAAACATGCATTGATTCTC
1 TTTTCTTTGCCTTATTTT-GATAAAATCAAAGTTTG-CCTTTAAATGAGACAAACATTGATTCTC
*
587733 GTAAAAGTCTCCATTCTTTTCAAGATT-GCGAACCAAAAACACAAT-CTCTTCATTAGGATACAT
64 GTAAAAGTCTCCATTCTTTTCAAGATTAG-GAACCAAAAACACATTCCT-TTCATTAGGATACAT
* * **
587796 GACATTGATGCTTTGTTGTCACAAGAGAAGC
127 GATATTGATGCTTTGGTGTTGCAAGAGAAGC
* * * *
587827 TTTTCTTT-CC-AACGTTGTTGATAAAATCAATGTTTGCCTCTTAAATAAGGCAAAC-TTGA
1 TTTTCTTTGCCTTA--TT-TTGATAAAATCAAAGTTTGCCT-TTAAATGAGACAAACATTGA
587886 ATAGTCATAC
Statistics
Matches: 2741, Mismatches: 813, Indels: 613
0.66 0.20 0.15
Matches are distributed among these distances:
152 2 0.00
153 2 0.00
154 8 0.00
155 9 0.00
156 68 0.02
157 308 0.11
158 900 0.33
159 1268 0.46
160 143 0.05
161 21 0.01
162 12 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (157 bp):
TTTTCTTTGCCTTATTTTGATAAAATCAAAGTTTGCCTTTAAATGAGACAAACATTGATTCTCGT
AAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGATA
TTGATGCTTTGGTGTTGCAAGAGAAGC
Found at i:586220 original size:158 final size:157
Alignment explanation
Indices: 585047--587176 Score: 608
Period size: 158 Copynumber: 13.5 Consensus size: 157
585037 TACTCATACT
* * * * * * *
585047 AATCCCCATTCTTTTC-TAGATTAGGCACCATAAACATAGTCTTCTTAT-ACGGATACATGATAT
1 AATCTCCATTCATTTCAT-GATTAGGAACCATAAACACATTCTCCTCATCA-GGATACATGATAT
* * * * * *
585110 TGGTGCTTTGGTTTCGCATGATACGCTTTT-GTCCCACCAATTTGTGTAAATTCTAAGTTCGTGC
64 TGATGTTTTGGTTTCGCAAGATATG-TTTTCGTCCCACCAGTTTGTGTAAA-TCAAAG-TCGTGC
* * *
585174 -CTCAAATGAGACAATCAAGGATTCTAGTATG
126 ACTCAAATGAGACAAACATGGATTCTAGTATA
* * * * * * * *
585205 GATCGT-CTTTCATTTC-TCAACTAGGCACTAT-AACACAATCTCCTCATCAGGATGCATGATAT
1 AATC-TCCATTCATTTCAT-GATTAGGAACCATAAACACATTCTCCTCATCAGGATACATGATAT
* * * * * * * ** * *** *
585267 TGATGGTTTT-CTTTTGCATTGAAATCTTTTCATTGCC-TTATTTTCCATAAAATCAAAGT-TTG
64 TGAT-GTTTTGGTTTCGCA-AGATATGTTTTC-GTCCCACCAGTTTGTGT-AAATCAAAGTCGTG
* ** * *
585329 CACTTTAAATGAGACATGCATTGATTCTCGTA-A
125 CAC-TCAAATGAGACAAACATGGATTCTAGTATA
* * * * * *
585362 AAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTC-CTTTCATTAGGATACATGACAT
1 AA-TCTCCATTCATTTCATGATTAGGAACCATAAACACATTCTC-CTCATCAGGATACATGATAT
* * * * * * * * *
585426 TGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACC-GTGATTG-ATAGAATCAAAGTTGT-
64 TGATGTTTTGGTTTCGCAAGATATG-TTTTCGTCCCACCAGT--TTGTGTA-AATCAAAGTCGTG
* * * * *
585488 CACTTAAATAAGACAAACA-GTAATACTCA-TATT
125 CACTCAAATGAGACAAACATG-GATTCT-AGTATA
* * * * * * * *
585521 AATCCCCATTC-TTTCCTGGATTAGGCACCATAAATC-GATTCTTCTTATACA-GATACCTAATA
1 AATCTCCATTCATTTCAT-GATTAGGAACCATAAA-CACATTCTCCTCAT-CAGGATACATGATA
*
585583 TTGATGTTTTGGTTTCGCAAGATATGTTTTCGTCCCACCAGTTTGTGTAAATTATAAGTCCGTGC
63 TTGATGTTTTGGTTTCGCAAGATATGTTTTCGTCCCACCAGTTTGTGTAAATCA-AAGT-CGTGC
*
585648 -CTCAAATGAGACAAACATGGATTCTAGTATG
126 ACTCAAATGAGACAAACATGGATTCTAGTATA
* * * * * * *
585679 GATCTTCATTCATTTCATGATTAGGAACTATAAACACATTCTGCTCATCAGGATGCACGATGTTG
1 AATCTCCATTCATTTCATGATTAGGAACCATAAACACATTCTCCTCATCAGGATACATGATATTG
* * * * * * * ** * * *
585744 ATGGTTTT-CTTTTGCATGGAAATCTTTTCTTAGCC-TTATTTTCCT-TAAAATCAAAGT-TTGC
66 AT-GTTTTGGTTTCGCA-AGATATGTTTTCGT-CCCACCAGTTT-GTGT-AAATCAAAGTCGTGC
* ** * *
585805 ACTTTAAATGAGACATGCATTGATTCTCGT-TA
126 AC-TCAAATGAGACAAACATGGATTCTAGTATA
* * * * * *
585837 AAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTC-CTTTCATTAGGATACATGACAT
1 AA-TCTCCATTCATTTCATGATTAGGAACCATAAACACATTCTC-CTCATCAGGATACATGATAT
* * * * * * * * *
585901 TGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACC-GTGATTG-ATAGAATCAAAGTTGT-
64 TGATGTTTTGGTTTCGCAAGATATG-TTTTCGTCCCACCAGT--TTGTGTA-AATCAAAGTCGTG
* * * *
585963 CACTTAAATAAGACAAACA-GGAATACTCA-TACA
125 CACTCAAATGAGACAAACATGG-ATTCT-AGTATA
* * * * * * *
585996 AATCCCCATTC-TTTCCTTGATTAGGCACCATAAAC-CTTGTTTTCTTATACA-GATACATGATA
1 AATCTCCATTCATTT-CATGATTAGGAACCATAAACACAT-TCTCCTCAT-CAGGATACATGATA
*
586058 TTGATGTTTTGGTTTCGCAAGATATGTTTTCGTCCCACCAGTTTGTGTAAATTATAAGTCCGTGC
63 TTGATGTTTTGGTTTCGCAAGATATGTTTTCGTCCCACCAGTTTGTGTAAATCA-AAGT-CGTGC
*
586123 -CTCAAATGAGACAAACATGGATTCTAGTATG
126 ACTCAAATGAGACAAACATGGATTCTAGTATA
* * * * * * *
586154 GATTTTCATTCATTTCATGATTAGAAACTATAAACACATTCTCCTCATCAGGATGCATGATGTTG
1 AATCTCCATTCATTTCATGATTAGGAACCATAAACACATTCTCCTCATCAGGATACATGATATTG
* * * * * * * ** * *** * * *
586219 ATGGTTTT-CTTTTGCATGGAAATCTTTTCTTTGCC-TTATTTTCCATAAAATCAAAGT-TTTCT
66 AT-GTTTTGGTTTCGCA-AGATATGTTTTC-GTCCCACCAGTTTGTGT-AAATCAAAGTCGTGCA
* ** * *
586281 CTTTAAATGAGACATGCATTGATTCTCGTA-A
127 C-TCAAATGAGACAAACATGGATTCTAGTATA
* * * * *
586312 AAGTCTCCATTCTTTTCAAGATT-GCAAACCAAAAACACATTC-CCTTCATTAGGATACATGATA
1 AA-TCTCCATTCATTTCATGATTAG-GAACCATAAACACATTCTCC-TCATCAGGATACATGATA
* * * * * * * *
586375 TTGATGCTTT-GTTGTCACAAGAGAAGCTTTTCTTTCCAAC-GTTAT-TGATAAAATCAAAGT-T
63 TTGATGTTTTGGTT-TCGCAAGATATG-TTTTCGTCCCACCAGTT-TGTG-T-AAATCAAAGTCG
* * * *
586436 TGC-CTCTTAAATAAGGA-AAACTTGAATACTCA-TACT-
123 TGCACTC--AAATGA-GACAAACATGGATTCT-AGTA-TA
* * * * * * * * * * *
586472 AATC-CTCATTCCTTTTAGGATTAGGCACCGTAAACATAGTATTCTTAT-ACGGATACAGGATAT
1 AATCTC-CATTCATTTCATGATTAGGAACCATAAACACATTCTCCTCATCA-GGATACATGATAT
* * * * * * * * * *
586535 TGATGATTTGGTTTCGCAAGAAACGCTTTT-TTCCTATCAATTTTTTTAAATTCTAAGTTCGTGC
64 TGATGTTTTGGTTTCGCAAGATATG-TTTTCGTCCCACCAGTTTGTGTAAA-TCAAAG-TCGTGC
586599 -CTCAAATGAGACAAACATGGATTCTAGTA-A
126 ACTCAAATGAGACAAACATGGATTCTAGTATA
* * * * * *
586629 GGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTTCTCATTC-GGATAAATGATAT
1 -AATCTCCATTCATTTCATGATTAGGAACCATAAACACATTCTCCTCA-TCAGGATACATGATAT
* * * * * * * * * *** *
586693 TGATGATTTT-CTTTTGCATGGAAATCTTTTCATTGCCA-TATTTTCCATAAAATCAAAGT-TTG
64 TGATG-TTTTGGTTTCGCA-AGATATGTTTTC-GTCCCACCAGTTTGTGT-AAATCAAAGTCGTG
* * * *
586755 CACTTTAAATGAGACATACATTGATTCTCGT-TA
125 CAC-TCAAATGAGACAAACATGGATTCTAGTATA
* * * * * *
586788 AAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTC-CTTTCATTAGGATACATGACAT
1 AA-TCTCCATTCATTTCATGATTAGGAACCATAAACACATTCTC-CTCATCAGGATACATGATAT
* * * * * * * * *
586852 TGATGCTTTGGTGTCGCAGGAGAAGCTTTTCTTTCCACC-GTTATAG-ATAGAATCAAAGTTGT-
64 TGATGTTTTGGTTTCGCAAGATATG-TTTTCGTCCCACCAGTT-T-GTGTA-AATCAAAGTCGTG
* * * * * *
586914 CTCTTAAATAAGACAAACACGAATACTCA-TACT-
125 CACTCAAATGAGACAAACATGGATTCT-AGTA-TA
* * * * * * *
586947 AATCCCCATT-TTTTC-TGGATTAGGCACCATAAACATAGTCTGCTTATACA-GATACATGATAT
1 AATCTCCATTCATTTCAT-GATTAGGAACCATAAACACATTCTCCTCAT-CAGGATACATGATAT
* * * * * * * *
587009 TGATGATTTGGTTTCGTAAGAAACGCTTTT--TTCCAGTCAATTTGTGTAAATTCTAAGTTCGTG
64 TGATGTTTTGGTTTCGCAAGATATG-TTTTCGTCCCA-CCAGTTTGTGTAAA-TCAAAG-TCGTG
* *
587072 C-CTCCAATGAGAGAAACATGGATTCTAGTA-A
125 CACTCAAATGAGACAAACATGGATTCTAGTATA
* * * * * * *
587103 GGATCTTCATTCATTTCATGATTAGGCACTATAAACACGTTCTCCTCATCAGCATGCATGATATT
1 -AATCTCCATTCATTTCATGATTAGGAACCATAAACACATTCTCCTCATCAGGATACATGATATT
587168 GATGGTTTT
65 GAT-GTTTT
587177 TTTTTGCATG
Statistics
Matches: 1425, Mismatches: 401, Indels: 291
0.67 0.19 0.14
Matches are distributed among these distances:
155 8 0.01
156 27 0.02
157 201 0.14
158 615 0.43
159 528 0.37
160 46 0.03
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (157 bp):
AATCTCCATTCATTTCATGATTAGGAACCATAAACACATTCTCCTCATCAGGATACATGATATTG
ATGTTTTGGTTTCGCAAGATATGTTTTCGTCCCACCAGTTTGTGTAAATCAAAGTCGTGCACTCA
AATGAGACAAACATGGATTCTAGTATA
Found at i:588563 original size:158 final size:158
Alignment explanation
Indices: 587921--589356 Score: 428
Period size: 158 Copynumber: 9.1 Consensus size: 158
587911 TCTTATACGA
* * * * * *
587921 ATACAAGATATTGATGATTTGGTTTCGTAAGAAATGCTTTTTTCCCA-TCAATTTGTGTAAATTC
1 ATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACT-AATTTTTGTAAATTC
* * * * *
587985 TAAGTTCGTGCCTTAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTA
65 AAAGTTCGTACCTCAAATGAGACAAACATGGATTCTCGTAAGGATCTCCATTCATTTCATGATTA
** * * *
588050 GGCACTTTAAACACGTTTTCCTAATCAGC
130 GGCACCATAAACACATTCTCCTCATCAGC
* * ** * ** * * * **
588079 ATGCATGATATTGATGGTTTTCTTTTGCGTGGAAATC-TTTTCCTT-GC-CTTATTTTCCATAAA
1 ATACATGATATTGATGCTTTGGTTTCGC-AAGAAA-CGCTTT-CTTCCCACTAATTTT-TGTAAA
* *** * * ** * * *
588141 CTCAAAGTTTAAACTTTAAATGAGACATGCATTGATTCTCGTAA-CAGTCTCCATT-ATTTTCAA
62 TTCAAAGTTCGTACCTCAAATGAGACAAACATGGATTCTCGTAAGGA-TCTCCATTCA-TTTCAT
* * * * *
588204 GATTAGGAACCAAAAACACATAC-CTTTCATTAGC
125 GATTAGGCACCATAAACACATTCTC-CTCATCAGC
* * * ** * *
588238 ATACATGACATTGATGCTTTGGTTTCGTAAGAGAA-GCTTGTCTTTCCAC-CGTTATTGATAAAA
1 ATACATGATATTGATGCTTTGGTTTCGCAAGA-AACGCTT-TCTTCCCACTAATTTTTG-TAAAT
* * * * *** * *
588301 TCAAAGTT-GT-CTCTCAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTC-TGG
63 TCAAAGTTCGTAC-CTCAAATGAGACAAACATGGATTCTCGTAAGGATCTCCATTCATTTCAT-G
* * * * *
588363 ATTAGGCACCATAAACATAGTCTTCTTATAAAG-
126 ATTAGGCACCATAAACACATTCTCCTCAT-CAGC
* * * *
588396 ATATATGATATTGATGCTTTAGTTTCGCAAGATACGCTTTCTTCCCACTAATTTTTGTAAATTCT
1 ATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACTAATTTTTGTAAATTCA
* * *
588461 AAGTTCGTACCTCAAATGAGACAAACATGGATTCTGGTAAGGATCTTCATTCATTTCATGATTTG
66 AAGTTCGTACCTCAAATGAGACAAACATGGATTCTCGTAAGGATCTCCATTCATTTCATGATTAG
* *
588526 GCACTATAAACACATTCTCCTCATCAGG
131 GCACCATAAACACATTCTCCTCATCAGC
* * ** ** * * ** * ** *
588554 ATGCATGATATTGATGGTTTTCTTTTTCATGGAAATC-TTTTCTTTGC-CTTATTTTCCATAAAA
1 ATACATGATATTGATGCTTTGGTTTCGCA-AGAAA-CGCTTTCTTCCCACTAATTTT-TGTAAAT
* *** * * ** * * * * *
588617 TGAAAGTTTAAACTTTAAATGAGACATGCATTGATTCTCGTAA-AAGTGTCCATTCTTTTCAAGA
63 TCAAAGTTCGTACCTCAAATGAGACAAACATGGATTCTCGTAAGGA-TCTCCATTCATTTCATGA
* * * * *
588681 TTAGGAACCAAAAACACATTC-CTTTCATTAGG
127 TTAGGCACCATAAACACATTCTC-CTCATCAGC
* * * * * ** * *
588713 ATACATGACATCGATGTTTTGGTGTCGCAAGAGAA-GCTTTTCTTTCCAC-CGTTATAGATAGAA
1 ATACATGATATTGATGCTTTGGTTTCGCAAGA-AACGC-TTTCTTCCCACTAATTTTTG-TA-AA
* * * * * * *** * *
588776 -TCAAAGTT-GT-CTCTTAAATAAGACAAACACGAATACTCATACTAATCCCCATT-TTTTC-TG
62 TTCAAAGTTCGTAC-CTCAAATGAGACAAACATGGATTCTCGTAAGGATCTCCATTCATTTCAT-
*** * * * *
588836 GATTAGGCACCATAAATGTAGTCTGCTTAT-ACGG
125 GATTAGGCACCATAAACACATTCTCCTCATCA-GC
* * * * * * * * * *
588870 ATACAAGATATTGAAGCTTTGGTTTCCCAAGATATGCTTTCTTCCCACCAATTTGTGCAGAGT-A
1 ATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACTAATTTTTGTAAATTCA
* * ** * * * * *
588934 TGAGTTCATTGCTCAAATGAGACAAACAAGGATTCTTGTAGGGATCTTCATTCATTTCGTGATT-
66 -AAGTTCGTACCTCAAATGAGACAAACATGGATTCTCGTAAGGATCTCCATTCATTTCATGATTA
* * *
588998 GCGAACCAAAAACACATTC-CCTTCATTAAG-
130 G-GCACCATAAACACATTCTCC-TCA-TCAGC
* * * *
589028 ATACATGACATTGATGCTTT-GTTGTCGCAAGAGAA-GCTTTTCTTTCCA--ACGTTATTGATAA
1 ATACATGATATTGATGCTTTGGTT-TCGCAAGA-AACGC-TTTCTTCCCACTA-ATTTTTG-TAA
* * * * * * * * * * **** * *
589089 AATCACAGTT--TGCCTCTTAATTAAGGCAAACTTGAATACTCATGCTAATCCCCATTCCTTTCA
61 ATTCAAAGTTCGTACCTC--AAATGAGACAAACATGGATTCTCGTAAGGATCTCCATTCATTTCA
* * * * * *
589152 GGATTAGGCACCGTAAACACAGTCTTCTAAT-ACGA
124 TGATTAGGCACCATAAACACATTCTCCTCATCA-GC
* * * * * **
589187 ATACAGGATATTAATGGTTTGGTTTCGCAAGAAACGGTTTTTTCTTA-TCAATTTTTGTAAATTC
1 ATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACT-AATTTTTGTAAATTC
* * * * * * * * * *
589251 TATGTTCATGCCTCAAATGAGAAAAACATGCATGCTTGTAAGGATCTTCATTCTTTTCATGATTA
65 AAAGTTCGTACCTCAAATGAGACAAACATGGATTCTCGTAAGGATCTCCATTCATTTCATGATTA
* * *
589316 GGCACTATAAACACATTGTCCTCGATC-GG
130 GGCACCATAAACACATTCTCCTC-ATCAGC
*
589345 ATAAATGATATT
1 ATACATGATATT
589357 CATGATTTTC
Statistics
Matches: 892, Mismatches: 312, Indels: 148
0.66 0.23 0.11
Matches are distributed among these distances:
155 2 0.00
156 18 0.02
157 122 0.14
158 377 0.42
159 352 0.39
160 21 0.02
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (158 bp):
ATACATGATATTGATGCTTTGGTTTCGCAAGAAACGCTTTCTTCCCACTAATTTTTGTAAATTCA
AAGTTCGTACCTCAAATGAGACAAACATGGATTCTCGTAAGGATCTCCATTCATTTCATGATTAG
GCACCATAAACACATTCTCCTCATCAGC
Found at i:589332 original size:317 final size:315
Alignment explanation
Indices: 588667--589332 Score: 800
Period size: 317 Copynumber: 2.1 Consensus size: 315
588657 TAAAAGTGTC
* * * *
588667 CATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATCGATGTTT
1 CATTCTTTTCATGATTAGGAACCAAAAACACATTCCCTTCATTAAGATACATGACATCGATGCTT
* * *
588732 TGGTGTCGCAAGAGAAGCTTTTCTTTCCACCGTTATAGATAGAATCAAAGTTGTCTCTTAAATAA
66 TGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATAGATAAAATCAAAGTTGCCTCTTAAATAA
* * ***
588797 GACAAACACGAATACTCATACTAATCCCCATTTTTTCTGGATTAGGCACCATAAATGTAGTCTGC
131 GACAAACACGAATACTCATACTAATCCCCATTCTTTCAGGATTAGGCACCATAAACACAGTCTGC
* * * *
588862 TTATACGGATACAAGATATTGAAGCTTTGGTTTCCCAAGATATGCTTTCTTCCCACCAATTTGTG
196 TAATACGAATACAAGATATTGAAGCTTTGGTTTCCCAAGAAACGCTTTCTTCCCACCAATTTGTG
* * * * *
588927 CAGAGTATGAGTTCATTGCTCAAATGAGACAAACAAGGATTCTTGTAGGGATCTT
261 CAAAGTATGAGTTCATTGCTCAAATGAGAAAAACAAGCATGCTTGTAAGGATCTT
* * *
588982 CATTCATTTCGTGATT-GCGAACCAAAAACACATTCCCTTCATTAAGATACATGACATTGATGCT
1 CATTCTTTTCATGATTAG-GAACCAAAAACACATTCCCTTCATTAAGATACATGACATCGATGCT
* * * *
589046 TTGTTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAATCACAGTTTGCCTCTTAATT
65 TTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATAGATAAAATCAAAG-TTGCCTCTTAAAT
* ** * *
589111 AAGGCAAACTTGAATACTCATGCTAATCCCCATTCCTTTCAGGATTAGGCACCGTAAACACAGTC
129 AAGACAAACACGAATACTCATACTAATCCCCATT-CTTTCAGGATTAGGCACCATAAACACAGTC
* * * * * * ** *
589176 TTCTAATACGAATACAGGATATT-AATGGTTTGGTTTCGCAAGAAACGGTTTTTTCTTATCAATT
193 TGCTAATACGAATACAAGATATTGAA-GCTTTGGTTTCCCAAGAAACGCTTTCTTCCCACCAATT
* * * * *
589240 TTTGTAAATTCT-ATGTTCA-TGCCTCAAATGAGAAAAACATGCATGCTTGTAAGGATCTT
257 TGTGCAAAGTATGA-GTTCATTG-CTCAAATGAGAAAAACAAGCATGCTTGTAAGGATCTT
* * *
589299 CATTCTTTTCATGATTAGGCACTATAAACACATT
1 CATTCTTTTCATGATTAGGAACCAAAAACACATT
589333 GTCCTCGATC
Statistics
Matches: 292, Mismatches: 52, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
314 1 0.00
315 101 0.35
316 46 0.16
317 143 0.49
318 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.34
Consensus pattern (315 bp):
CATTCTTTTCATGATTAGGAACCAAAAACACATTCCCTTCATTAAGATACATGACATCGATGCTT
TGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATAGATAAAATCAAAGTTGCCTCTTAAATAA
GACAAACACGAATACTCATACTAATCCCCATTCTTTCAGGATTAGGCACCATAAACACAGTCTGC
TAATACGAATACAAGATATTGAAGCTTTGGTTTCCCAAGAAACGCTTTCTTCCCACCAATTTGTG
CAAAGTATGAGTTCATTGCTCAAATGAGAAAAACAAGCATGCTTGTAAGGATCTT
Found at i:594475 original size:42 final size:42
Alignment explanation
Indices: 594419--594537 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
594409 TTCTTCTCTC
* * *
594419 CTCCTTCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
594461 CTCCTCCTATCATCCCTCCTATCTTTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
594503 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
594538 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:594479 original size:24 final size:24
Alignment explanation
Indices: 594443--594528 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
594433 CCTCCTCTCT
* *
594443 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
594467 CTATCATCCCTCCTATCT-T--TA
1 CTATCATCCCTCCTGTCTCTCCTC
594488 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
594509 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
594529 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 8 0.16
19 1 0.02
20 1 0.02
21 12 0.24
22 1 0.02
23 1 0.02
24 25 0.51
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.43
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:595312 original size:22 final size:24
Alignment explanation
Indices: 595278--595321 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
595268 TACTGGTTTT
595278 TTTTTTCTCTTTTTGTATTCTTTC
1 TTTTTTCTCTTTTTGTATTCTTTC
595302 TTTTTT-T-TTTTTGTATTCTT
1 TTTTTTCTCTTTTTGTATTCTT
595322 GAAAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 13 0.65
23 1 0.05
24 6 0.30
ACGTcount: A:0.05, C:0.11, G:0.05, T:0.80
Consensus pattern (24 bp):
TTTTTTCTCTTTTTGTATTCTTTC
Found at i:597467 original size:158 final size:156
Alignment explanation
Indices: 596171--600828 Score: 1223
Period size: 158 Copynumber: 29.4 Consensus size: 156
596161 CTCGTAAAAG
* * * * * * * *
596171 TCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATACCTT-TCATTA-GCATACATGACATTG
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACAT-TCTTCTTA-TACGGATACATGATATTG
* * * * *
596234 ATGCTTTGGTGTCGCAAGAGAA-GCTTGTCTTTCCGCC-GTTATTGATAGAATCAAAGTTC-T-C
64 ATGCTTTGGTTTCGCAAGA-AACGCTT-TCTTTCCACCAATT-TTG-TAAAATCTAAG-TCGTGC
* * *
596295 CT-AAATAAGACAAACATGAATACTCA-TACT-AA
124 CTCAAATGAGACAAACATGGATTCT-AGTA-TGAA
* * * * * * ** *
596327 TCCCCATTCTTTTC-TGGATTAGGCACCATAAACATAGTCTCCTTAAAAAGATATATGATATTGA
1 TCTCCATTCTTTTCAT-GATTAGGCACTATAAACACATTCTTCTTATACGGATACATGATATTGA
* * * * *
596391 TGCTTTAGTTTCGCAAGATACGCTTTCTTCCCACTAATTTT-TGAAAATTCTAAGTTCGTACCTC
65 TGCTTTGGTTTCGCAAGAAACGCTTTCTTTCCACCAATTTTGT-AAAA-TCTAAG-TCGTGCCTC
* * * *
596455 GAATGAGACAAACATGGATTCTGGTAAGGA
127 AAATGAGACAAACATGGATTCTAGTATGAA
* * * * * * * *
596485 TCTTCATTCATTTT-AGGATTTGGCACTATAAACGCATTCTCCTCATAAGGATGCATGATATTGA
1 TCTCCATTC-TTTTCATGATTAGGCACTATAAACACATTCTTCTTATACGGATACATGATATTGA
* ** * * * * ** * * * *
596549 TGGTTTTCTTTTGCATGGAAATC-TTTTCTTTGC-CTTATTTTCCATAAAATCAAAGT-TTACAC
65 TGCTTTGGTTTCGCA-AGAAA-CGCTTTCTTTCCACCAATTTT--GTAAAATCTAAGTCGTGC-C
* ** * *
596611 TTTAAATGAGACATGCATTGATTCTCA-TA-GTAG
125 -TCAAATGAGACAAACATGGATTCT-AGTATG-AA
* * * * * * *
596644 TCTCCATTCTTTTCAAGAATAGGAACCAAAAACACATTTCTT-TCATTA-GGATACATGACATTG
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACA-TTCTTCTTA-TACGGATACATGATATTG
* * * * * *
596707 ATGCTTTGGTGTCGCAAGAGAA-GCTTGTGTTTCCACC-GTTTTAGATAGAATCAAAGTTGT-CT
64 ATGCTTTGGTTTCGCAAGA-AACGCTT-TCTTTCCACCAATTTT-G-TAAAATCTAAGTCGTGC-
* * * *
596769 CTTAAATAAGACAAACA-GGAATACCCA-TACT-AA
124 CTCAAATGAGACAAACATGG-AT-TCTAGTA-TGAA
* * * * *
596802 TCCCCATTCTTTTC-TGGATTAGGCACCATAAACATAGTCTTTTTATACGGATACATGATATTG-
1 TCTCCATTCTTTTCAT-GATTAGGCACTATAAACACATTCTTCTTATACGGATACATGATATTGA
* * * * * * * *
596865 TGGCTTTGGTTTCGCAAGATACGTTTTCGTCCCACCATTTTGTGTAAATTCTAAGTTTGGGCCTC
65 T-GCTTTGGTTTCGCAAGAAACGCTTTCTTTCCACCAATTT-TGTAAAATCTAAG-TCGTGCCTC
* *
596930 AAATGAGACAAACGTGGATTATAGTAT-AGA
127 AAATGAGACAAACATGGATTCTAGTATGA-A
* ** * *
596960 TCTTCATTCAATTCATGATTAGGCACTATAAACACATTC-TCGTCAT-CAGGATGCATGATATTG
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATTCTTC-TTATAC-GGATACATGATATTG
* ** * * * * ** * * *
597023 ATGGTTTTCTTTTGCATCGAAATC-TTTTCTTTGC-CTTATTTTCCATAAAATCAAAGT-TTGCA
64 ATGCTTTGGTTTCGCA-AGAAA-CGCTTTCTTTCCACCAATTTT--GTAAAATCTAAGTCGTGC-
* ** * * *
597085 CTTTAAATGAGACATGCATTGATTCTTGTAAT-AG
124 C-TCAAATGAGACAAACATGGATTCTAGT-ATGAA
* * * * * * **
597119 TCTCCATTCTTTTCAAGATTTGGAACCAAAAACACATTCCTT-TCACTA-GGATACATGACGTTG
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATT-CTTCTTA-TACGGATACATGATATTG
* * * * * *
597182 ATGCTTTGGTGTCGCAAGAGAA-GCTTGTCTTTCCACC-GTTATTAATAGAATCAAAGTTGT-CT
64 ATGCTTTGGTTTCGCAAGA-AACGCTT-TCTTTCCACCAATT-TT-GTAAAATCTAAGTCGTGC-
* * * * * **
597244 TTTAAATAAGACAAACATGAATACTCTTACT-AA
124 CTCAAATGAGACAAACATGGATTCTAGTA-TGAA
* * * ** * ** *
597277 TCCCCATTCTTTT-TTGGATTTGTAACCATAAACGTAGTCTTCTTATACGGATACATGATATTGA
1 TCTCCATTCTTTTCAT-GATTAGGCACTATAAACACATTCTTCTTATACGGATACATGATATTGA
* * *
597341 TGCTTTGGTTTCGCAAGATACGCTTTCGTCCCACCAATTTGTGTAAAATCTAAGTCCGTGCCTCA
65 TGCTTTGGTTTCGCAAGAAACGCTTTCTTTCCACCAATTT-TGTAAAATCTAAGT-CGTGCCTCA
* **
597406 AATGAGACAAACATGGATTCTAATATGGG
128 AATGAGACAAACATGGATTCTAGTATGAA
* * * ** *
597435 TCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCCT-CAGGATGCATGATATTGA
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATTCTTCTTATAC-GGATACATGATATTGA
** ** * * * * ** * * *
597499 TTATTTTCTTTTGCATCGAAATC-TTTTCTTTGC-CTTATTTTCCATAAAATCAAAGT-TTGCAC
65 TGCTTTGGTTTCGCA-AGAAA-CGCTTTCTTTCCACCAATTTT--GTAAAATCTAAGTCGTGC-C
* ** * * * *
597561 TTTAAATGAGACATGCATTGATTCTTGTAAGAG
125 -TCAAATGAGACAAACATGGATTCTAGTATGAA
* * * * * *
597594 TCTCCATTCTTTTTAAGATTAGG-AATCAAAAACACATTCCTT-TCATTA-GGATACATGACATT
1 TCTCCATTCTTTTCATGATTAGGCACT-ATAAACACATT-CTTCTTA-TACGGATACATGATATT
* * * * * *
597656 GATGCTTTGGTGTCGCAAGAAAAGCTTGTCTTTCCACC-GTTATTGATAGAATC-AA-ACCTGCC
63 GATGCTTTGGTTTCGCAAGAAACGCTT-TCTTTCCACCAATT-TTG-TAAAATCTAAGTCGTGCC
* * *
597718 TCTTCAATAAGACAAACA-GGAATACTCA-TACT-AA
125 TC--AAATGAGACAAACATGG-ATTCT-AGTA-TGAA
* * * *
597752 TCCCCATTCTTTTC-TGGATTAGGCACCATAAAC-CTAGTCTTCTTATACGGATACATGGTATTG
1 TCTCCATTCTTTTCAT-GATTAGGCACTATAAACAC-ATTCTTCTTATACGGATACATGATATTG
* * * * * * * * *
597815 ATGCTTCGGTTTCGTAAGATACGGTTTCGTCCCACCACTTTGTGTAAATTTTAAGTCCGTGCCTC
64 ATGCTTTGGTTTCGCAAGAAACGCTTTCTTTCCACCAATTT-TGTAAAATCTAAGT-CGTGCCTC
* *
597880 AAATGAGACAAATATGGATTCTAGTATGGA
127 AAATGAGACAAACATGGATTCTAGTATGAA
* * ** * * * *
597910 TCTTCATTCATTTCATGATTATACACTATAAACACATTCTCCTCAT-CAGCATGCATGATATTGA
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATTCTTCTTATAC-GGATACATGATATTGA
* ** * * * ** * * *
597974 TGGTTTTCTTTTGCATAGAAATC-TTTTCTTTGC-CTTATTTTCCATAAAATCAAAGT-TTGCAC
65 TGCTTTGGTTTCGCA-AGAAA-CGCTTTCTTTCCACCAATTTT--GTAAAATCTAAGTCGTGC-C
* ** * *
598036 TTTAAATGAGACATGCATTGATTCTAGTAAT-AG
125 -TCAAATGAGACAAACATGGATTCTAGT-ATGAA
* * * * *
598069 TCTCCATTCTTTTCAAGATTAGGAACAAAAAACACATTCTT-TTCATTA-GGATACATGACATTG
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATTCTTCTT-A-TACGGATACATGATATTG
* * * * * * * *
598132 ATGCTCTAGTGTCACAAGAGAA-GCTTGTCTTTCCACC-GTTATTGATAGAAT-TAAAGT-TTTC
64 ATGCTTTGGTTTCGCAAGA-AACGCTT-TCTTTCCACCAATT-TTG-TAAAATCT-AAGTCGTGC
* * * *
598193 TCTTAAATAAGACAAACATGAATACTCA-TACT-AA
124 -CTCAAATGAGACAAACATGGATTCT-AGTA-TGAA
* * * * * * * *
598227 TCCCCAATCTTTTC-TAGATTAGTCACCATAAACATAGTCTGCTTATACGGATAGATGATATTGA
1 TCTCCATTCTTTTCAT-GATTAGGCACTATAAACACATTCTTCTTATACGGATACATGATATTGA
* * * *
598291 AGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCA
65 TGCTTTGGTTTCGCAAGAAACGCTTTCTTTCCACCAATTT-TGTAAAATCTAAG-TCGTGCCTCA
*
598356 AATGAGACAAACATGGATTCTAGTATGGA
128 AATGAGACAAACATGGATTCTAGTATGAA
* * * * * * * *
598385 TCTTCATTCATTTCATGATTAGGCACTATAAAGAAATTCTCCTCAT-CAGGATGCACGATATTGA
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATTCTTCTTATAC-GGATACATGATATTGA
* ** * * * ** * * *
598449 TGGTTTTCCTTT-GCATGGAAATC-TTTTCTTTGC-CTTATTTTCCATAAAATCAAAGT-TTGCA
65 T-GCTTTGGTTTCGCA-AGAAA-CGCTTTCTTTCCACCAATTTT--GTAAAATCTAAGTCGTGC-
* * ** * * **
598510 CTTTAAATGAAACATGCACT-GATTGTCGTAAAAA
124 C-TCAAATGAGACAAACA-TGGATTCTAGTATGAA
* * * * * * * *
598544 ACTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTT-TTATTA-GGATACAGGACAATG
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATT-CTTCTTA-TACGGATACATGATATTG
* ** * * ** * *
598607 TTGCTTTGGCGTCGCAAGAGAAAC-CTGTCTTTCCACC-GTTATTGATGGAATCAAAGT-TTGTC
64 ATGCTTTGGTTTCGC-A-AGAAACGCTTTCTTTCCACCAATT-TTG-TAAAATCTAAGTCGTG-C
* * * *
598669 TCTTAAATAAGACAAACATGAATACTCA-TACT-AA
124 -CTCAAATGAGACAAACATGGATTCT-AGTA-TGAA
* * * ** * * *
598703 TCCCCATTCTTTTC-TAGATTAGTCACCATAAACTTAGTCTTTTTATATGGATACATGATATTGA
1 TCTCCATTCTTTTCAT-GATTAGGCACTATAAACACATTCTTCTTATACGGATACATGATATTGA
* * * * * * * *
598767 TGCTTTGGTTTTGCAAGATACGCTTTCGTCCCACC-ATTTTGTGGAAATTCTAAGTTTGGGCCGC
65 TGCTTTGGTTTCGCAAGAAACGCTTTCTTTCCACCAATTTTGT--AAAATCTAAG-TCGTGCCTC
*
598831 AAATGAGACAAACATGGATTCTAGTATGGA
127 AAATGAGACAAACATGGATTCTAGTATGAA
** * * * *
598861 TCTTTATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCAT-CAGGATGCATGATATTGA
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATTCTTCTTATAC-GGATACATGATATTGA
* * * * * ** * * *
598925 TTG-TTCT-CTTTTGCATGGAAATC-TTTTCTTTGC-CTTATTTTCCATAAAATCAAAGT-TTGC
65 -TGCTT-TGGTTTCGCA-AGAAA-CGCTTTCTTTCCACCAATTTT--GTAAAATCTAAGTCGTGC
* ** * * *
598985 ACTTTAAATGAGACATGCATTGATTCTTGTA-AAA
124 -C-TCAAATGAGACAAACATGGATTCTAGTATGAA
* * * * * *
599019 GTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTT-TCATTA-GGATACATGACATT
1 -TCTCCATTCTTTTCATGATTAGGCACTATAAACACATT-CTTCTTA-TACGGATACATGATATT
* * * * * *
599082 GATGCTTTGGTGTT-GTAAGAGAA-GCTTGTATTTCCACC-GTTATTGATAGAATCAAAGTTGT-
63 GATGCTTTGGT-TTCGCAAGA-AACGCTT-TCTTTCCACCAATT-TTG-TAAAATCTAAGTCGTG
* * *
599143 CTCTTAAATAAGACAAACA-GGAATACTCA-TACT-AA
123 C-CTCAAATGAGACAAACATGG-ATTCT-AGTA-TGAA
* * * * * *
599178 TCCCCATTCTTTTC-TGGATTAGGCCCCATAATCATAGTCTTCTTATACGGATACATGATATTGA
1 TCTCCATTCTTTTCAT-GATTAGGCACTATAAACACATTCTTCTTATACGGATACATGATATTGA
* * * *
599242 TGTTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCA
65 TGCTTTGGTTTCGCAAGAAACGCTTTCTTTCCACCAATTT-TGTAAAATCTAAG-TCGTGCCTCA
*
599307 AATGAGACAAACACGGATTCTAGTATTG-A
128 AATGAGACAAACATGGATTCTAGTA-TGAA
* * * * * * * *
599336 TCTTCACTCATTTCATGATTAGGCACTATAAACATATTCTCCTCAT-CAGGATGCACGATATTGA
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATTCTTCTTATAC-GGATACATGATATTGA
* ** * * * ** * * *
599400 TGGTTTTCCTTT-GCATGGAAATC-TTTTCTTTGC-CTTATTTTACATAAAATCAAAGT-TTGCA
65 T-GCTTTGGTTTCGCA-AGAAA-CGCTTTCTTTCCACCAATTTT--GTAAAATCTAAGTCGTGC-
* ** * * * *
599461 CTTTAAATGAGACATGCATTGATTGTCGTA-AAA
124 C-TCAAATGAGACAAACATGGATTCTAGTATGAA
* * * * * * * *
599494 GTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTT-TTCTTA-GGATACAGGACAAT
1 -TCTCCATTCTTTTCATGATTAGGCACTATAAACACATT-CTTCTT-ATACGGATACATGATATT
* ** * * ** * *
599557 GTTGCTTTGGGGTCGCAAGAGAA-GCCTGTCTTTCCACC-GTTATTGATGGAATCGAAGT-TTGT
63 GATGCTTTGGTTTCGCAAGA-AACG-CTTTCTTTCCACCAATT-TTG-TAAAATCTAAGTCGTG-
* * * *
599619 CTCTTAAATAAGACAAACATGAATACTCA-TACT-AA
123 C-CTCAAATGAGACAAACATGGATTCT-AGTA-TGAA
* * ** * *
599654 TCCCCATTCTTTTC-TAGATTAGGCACCATAAACTTAGTCTTCTTATATGGATACATGATATTGA
1 TCTCCATTCTTTTCAT-GATTAGGCACTATAAACACATTCTTCTTATACGGATACATGATATTGA
* * * * *
599718 TGCTTTGGTTTCGCAAGATACGCTTTC-TTCTCACCAATTTGTGTAAAGTATGAGTTCATTG-CT
65 TGCTTTGGTTTCGCAAGAAACGCTTTCTTTC-CACCAATTT-TGTAAAATCTAAG-TC-GTGCCT
* * * *
599781 CAAATGAGACAAACAGGGATTCTTGTAGGGA
126 CAAATGAGACAAACATGGATTCTAGTATGAA
* * * * * * * *
599812 TCTTCATTCATTTCGTGATTAGGCGCTATAAACACATTCTCCTCAT-CAGGATGCATGATGTTGA
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATTCTTCTTATAC-GGATACATGATATTGA
* ** * * * ** * * ** *
599876 TGGTTTTCTTTTGCATGGAAATC-TTTTCTTTGCC-TTATTTTCTATAAAATGAAAGT-TTGCTC
65 TGCTTTGGTTTCGCA-AGAAA-CGCTTTCTTT-CCACCAATTT-TGTAAAATCTAAGTCGTGC-C
* ** * * *
599938 TTTAAATGAGACATGCATTGATTCTCGTA-AAA
125 -TCAAATGAGACAAACATGGATTCTAGTATGAA
* * * * *
599970 GTCTCCATTCTTTTCAAGATT-GCGAACCAAAAACACATTC-CCTTCATTA-GGATACATGATAT
1 -TCTCCATTCTTTTCATGATTAG-GCACTATAAACACATTCTTCTT-A-TACGGATACATGATAT
* * * *
600032 TGATGCTTT-GTTGTCGCAAGAGAA-GCTTTTCTTTCCAAC-GTTATTGATAAAATCAAAGT-TT
62 TGATGCTTTGGTT-TCGCAAGA-AACGC-TTTCTTTCCACCAATT-TTG-TAAAATCTAAGTCGT
* * * *
600093 GCCTCTTAAATAAGGA-AAACTTGAATACTCA-TACT-AA
122 GCCTC--AAATGA-GACAAACATGGATTCT-AGTA-TGAA
* * ** * * *
600130 TC-CTCATTCCTTTCAGGATTAGGCACCGTAAACATAGTCTTCTTATACGGATACAGGATATTGA
1 TCTC-CATTCTTTTCATGATTAGGCACTATAAACACATTCTTCTTATACGGATACATGATATTGA
* * * *
600194 TGATTTGGTTTCGCAAGAAACGCTTT-TTTCCTATCAATTTTTTTAAATTCTAAGTTCGTGCCTC
65 TGCTTTGGTTTCGCAAGAAACGCTTTCTTTCC-ACCAA-TTTTGTAAAATCTAAG-TCGTGCCTC
* * *
600258 AAATGAGACAAAAATGGATTCTAGTAAGGA
127 AAATGAGACAAACATGGATTCTAGTATGAA
* * * * * *
600288 TCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCAT-CAGCATGCATGATATTGA
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATTCTTCTTATAC-GGATACATGATATTGA
* ** * * * * ** * * *
600352 TGGTTTTCTTTTGCATGGAAATC-TTTTCTTTGC-CTTATTTTCCATAAAATCTAAGT-TTAAAC
65 TGCTTTGGTTTCGCA-AGAAA-CGCTTTCTTTCCACCAATTTT--GTAAAATCTAAGTCGT--GC
* * ** * *
600414 TTTAAATGAGACATGCATTGATTCTAGTA-AAA
124 CTCAAATGAGACAAACATGGATTCTAGTATGAA
* * * * * * * *
600446 GTCTCCACTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCCT-T-GGGATACATGACATT
1 -TCTCCATTCTTTTCATGATTAGGCACTATAAACACATT-C-TTCTTATACGGATACATGATATT
* ** * * * *
600509 GATGCTTTGGTGTCGCAAGAGAA-GCTTTTCTTTCC-CCCGTTATAGATAGAATCAAAGTTGT-C
63 GATGCTTTGGTTTCGCAAGA-AACGC-TTTCTTTCCACCAATT-TTG-TAAAATCTAAGTCGTGC
* * * * *
600571 TCTTAAATAAGACAAACAAGAATACTCA-TACT-AA
124 -CTCAAATGAGACAAACATGGATTCT-AGTA-TGAA
* * * * * * *
600605 TCCCCATTTTTTTC-TGGATTAGGCACCATAAACATATTCTGCTTATATGGATACAAGATATTGA
1 TCTCCATTCTTTTCAT-GATTAGGCACTATAAACACATTCTTCTTATACGGATACATGATATTGA
* * * * * * * * *
600669 AGCTTTGGTTTCGCAAGATACGCTTTCTTCCCACCAATTTGTGCAGAGTATGAGTTCATTG-CTC
65 TGCTTTGGTTTCGCAAGAAACGCTTTCTTTCCACCAATTT-TGTAAAATCTAAG-TC-GTGCCTC
* * * *
600733 AAATGAGACAAACAGGGATTCTTGTAGGGA
127 AAATGAGACAAACATGGATTCTAGTATGAA
* * * * * * *
600763 TCTTCATTCATTTCGTGATTAGCCACTATAAACCCATTCTCCGCTT-TA-GGATAAATGATATTG
1 TCTCCATTCTTTTCATGATTAGGCACTATAAACACATTCT--TCTTATACGGATACATGATATTG
600826 ATG
64 ATG
600829 GTTTTCTTTT
Statistics
Matches: 3228, Mismatches: 939, Indels: 668
0.67 0.19 0.14
Matches are distributed among these distances:
153 1 0.00
154 3 0.00
155 21 0.01
156 75 0.02
157 207 0.06
158 1470 0.46
159 1324 0.41
160 118 0.04
161 9 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (156 bp):
TCTCCATTCTTTTCATGATTAGGCACTATAAACACATTCTTCTTATACGGATACATGATATTGAT
GCTTTGGTTTCGCAAGAAACGCTTTCTTTCCACCAATTTTGTAAAATCTAAGTCGTGCCTCAAAT
GAGACAAACATGGATTCTAGTATGAA
Found at i:598891 original size:476 final size:475
Alignment explanation
Indices: 596154--601084 Score: 7400
Period size: 475 Copynumber: 10.4 Consensus size: 475
596144 GTTTTCATCA
*
596154 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATACCTTTCATTA
1 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTA
* *
596219 GCATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCGCCGTTATTGATAGAA
66 GGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAA
*
596284 TCAAAG-T-TCTCCTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATT
131 TCAAAGTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATT
* * ** * *
596347 AGGCACCATAAACATAGTCTCCTTAAAAAGATATATGATATTGATGCTTTAGTTTCGCAAGATAC
196 AGGCACCATAAACATAGTCTTCTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGATAC
* * * * *
596412 GCTTTCTTCCCACTAATTTTTGAAAATTCTAAGTTCGTACCTCGAATGAGACAAACATGGATTCT
261 GCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * * * * *
596477 GGTAAGGATCTTCATTCATTTTAGGATTTGGCACTATAAACGCATTCTCCTCATAAGGATGCATG
326 AGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATG
596542 ATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTT
391 ATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTT
*
596607 ACACTTTAAATGAGACATGC
456 GCACTTTAAATGAGACATGC
* ** * *
596627 ATTGATTCTCATAGTAGTCTCCATTCTTTTCAAGAATAGGAACCAAAAACACATTTCTTTCATTA
1 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTA
*
596692 GGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTGTTTCCACCGTT-TTAGATAGA
66 GGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATT-GATAGA
* *
596756 ATCAAAGTTGTCTCTTAAATAAGACAAACAGGAATACCCATACTAATCCCCATTCTTTTCTGGAT
130 ATCAAAGTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGAT
*
596821 TAGGCACCATAAACATAGTCTTTTTATACGGATACATGATATTG-TGGCTTTGGTTTCGCAAGAT
195 TAGGCACCATAAACATAGTCTTCTTATACGGATACATGATATTGAT-GCTTTGGTTTCGCAAGAT
* * * * * *
596885 ACGTTTTCGTCCCACCATTTTGTGTAAATTCTAAGTTTGGGCCTCAAATGAGACAAACGTGGATT
259 ACGCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT
* * * *
596950 ATAGTATAGATCTTCATTCAATTCATGATTAGGCACTATAAACACATTCTCGTCATCAGGATGCA
324 CTAGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCA
*
597015 TGATATTGATGGTTTTCTTTTGCATCGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGT
389 TGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGT
597080 TTGCACTTTAAATGAGACATGC
454 TTGCACTTTAAATGAGACATGC
* * * *
597102 ATTGATTCTTGTAATAGTCTCCATTCTTTTCAAGATTTGGAACCAAAAACACATTCCTTTCACTA
1 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTA
* *
597167 GGATACATGACGTTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTAATAGAA
66 GGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAA
* * *
597232 TCAAAGTTGTCTTTTAAATAAGACAAACATGAATACTCTTACTAATCCCCATTCTTTTTTGGATT
131 TCAAAGTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATT
* ** *
597297 TGTAACCATAAACGTAGTCTTCTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGATAC
196 AGGCACCATAAACATAGTCTTCTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGATAC
* * *
597362 GCTTTCGTCCCACCAATTTGTGTAAAATCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTCT
261 GCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * *
597427 AATATGGGTCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCCTCAGGATGCATG
326 AGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATG
** *
597492 ATATTGATTATTTTCTTTTGCATCGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTT
391 ATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTT
597557 GCACTTTAAATGAGACATGC
456 GCACTTTAAATGAGACATGC
* * * *
597577 ATTGATTCTTGTAAGAGTCTCCATTCTTTTTAAGATTAGGAATCAAAAACACATTCCTTTCATTA
1 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTA
*
597642 GGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTGTCTTTCCACCGTTATTGATAGAA
66 GGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAA
** * * *
597707 TCAAACCTGCCTCTTCAATAAGACAAACAGGAATACTCATACTAATCCCCATTCTTTTCTGGATT
131 TCAAAGTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATT
* * * *
597772 AGGCACCATAAACCTAGTCTTCTTATACGGATACATGGTATTGATGCTTCGGTTTCGTAAGATAC
196 AGGCACCATAAACATAGTCTTCTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGATAC
* * * * * *
597837 GGTTTCGTCCCACCACTTTGTGTAAATTTTAAGTCCGTGCCTCAAATGAGACAAATATGGATTCT
261 GCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
** *
597902 AGTATGGATCTTCATTCATTTCATGATTATACACTATAAACACATTCTCCTCATCAGCATGCATG
326 AGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATG
*
597967 ATATTGATGGTTTTCTTTTGCATAGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTT
391 ATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTT
598032 GCACTTTAAATGAGACATGC
456 GCACTTTAAATGAGACATGC
* * * *
598052 ATTGATTCTAGTAATAGTCTCCATTCTTTTCAAGATTAGGAACAAAAAACACATTCTTTTCATTA
1 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTA
* * *
598117 GGATACATGACATTGATGCTCTAGTGTCACAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAA
66 GGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAA
* * * *
598182 TTAAAGTTTTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCAATCTTTTCTAGATT
131 TCAAAGTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATT
* * * *
598247 AGTCACCATAAACATAGTCTGCTTATACGGATAGATGATATTGAAGCTTTGGTTTCGCAAGATAC
196 AGGCACCATAAACATAGTCTTCTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGATAC
598312 GCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
261 GCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * *
598377 AGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAAGAAATTCTCCTCATCAGGATGCACG
326 AGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATG
*
598442 ATATTGATGGTTTTCCTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTT
391 ATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTT
*
598507 GCACTTTAAATGAAACATGC
456 GCACTTTAAATGAGACATGC
* * ** *
598527 ACTGATTGTCGTAAAAAACTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTTATTA
1 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTA
* * * * * * *
598592 GGATACAGGACAATGTTGCTTTGGCGTCGCAAGAGAAACCTGTCTTTCCACCGTTATTGATGGAA
66 GGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAA
*
598657 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTAGAT
131 TCAAAG-TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGAT
* * * * *
598722 TAGTCACCATAAACTTAGTCTTTTTATATGGATACATGATATTGATGCTTTGGTTTTGCAAGATA
195 TAGGCACCATAAACATAGTCTTCTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGATA
* * * * * *
598787 CGCTTTCGTCCCACCATTTTGTGGAAATTCTAAGTTTGGGCCGCAAATGAGACAAACATGGATTC
260 CGCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
*
598852 TAGTATGGATCTTTATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCAT
325 TAGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCAT
* *
598917 GATATTGATTGTTCTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTT
390 GATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTT
598982 TGCACTTTAAATGAGACATGC
455 TGCACTTTAAATGAGACATGC
*
599003 ATTGATTCTTGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTA
1 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTA
* * *
599068 GGATACATGACATTGATGCTTTGGTGTTGTAAGAGAAGCTTGTATTTCCACCGTTATTGATAGAA
66 GGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAA
*
599133 TCAAAGTTGTCTCTTAAATAAGACAAACAGGAATACTCATACTAATCCCCATTCTTTTCTGGATT
131 TCAAAGTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATT
* * *
599198 AGGCCCCATAATCATAGTCTTCTTATACGGATACATGATATTGATGTTTTGGTTTCGCAAGATAC
196 AGGCACCATAAACATAGTCTTCTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGATAC
*
599263 GCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACACGGATTCT
261 GCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * * *
599328 AGTATTGATCTTCACTCATTTCATGATTAGGCACTATAAACATATTCTCCTCATCAGGATGCACG
326 AGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATG
* *
599393 ATATTGATGGTTTTCCTTTGCATGGAAATCTTTTCTTTGCCTTATTTTACATAAAATCAAAGTTT
391 ATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTT
599458 GCACTTTAAATGAGACATGC
456 GCACTTTAAATGAGACATGC
*
599478 ATTGATTGTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTTC-TT
1 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCC-TTTCATT
* * * * * *
599542 AGGATACAGGACAATGTTGCTTTGGGGTCGCAAGAGAAGCCTGTCTTTCCACCGTTATTGATGGA
65 AGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGA
* *
599607 ATCGAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTAGA
130 ATCAAAG-TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGA
* *
599672 TTAGGCACCATAAACTTAGTCTTCTTATATGGATACATGATATTGATGCTTTGGTTTCGCAAGAT
194 TTAGGCACCATAAACATAGTCTTCTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGAT
* * * * * *
599737 ACGCTTTCTTCTCACCAATTTGTGTAAAGTATGAGTTCATTG-CTCAAATGAGACAAACAGGGAT
259 ACGCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTC-GTGCCTCAAATGAGACAAACATGGAT
* * * *
599801 TCTTGTAGGGATCTTCATTCATTTCGTGATTAGGCGCTATAAACACATTCTCCTCATCAGGATGC
323 TCTAGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGC
* * *
599866 ATGATGTTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCTATAAAATGAAAG
388 ATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAG
*
599931 TTTGCTCTTTAAATGAGACATGC
453 TTTGCACTTTAAATGAGACATGC
*
599954 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATT-GCGAACCAAAAACACATTCCCTTCATT
1 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAG-GAACCAAAAACACATTCCTTTCATT
* * * * *
600018 AGGATACATGATATTGATGCTTTGTTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAA
65 AGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGA
* * * * *
600083 ATCAAAGTTTGCCTCTTAAATAAGGA-AAACTTGAATACTCATACTAATCCTCATTCCTTTCAGG
130 ATCAAAG-TTGTCTCTTAAATAA-GACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGG
* * *
600147 ATTAGGCACCGTAAACATAGTCTTCTTATACGGATACAGGATATTGATGATTTGGTTTCGCAAGA
193 ATTAGGCACCATAAACATAGTCTTCTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGA
* * * * * * *
600212 AACGCTTTTTTCCTATCAATTTTTTTAAATTCTAAGTTCGTGCCTCAAATGAGACAAAAATGGAT
258 TACGCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* *
600277 TCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGCATGC
323 TCTAGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGC
*
600342 ATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCTAAG
388 ATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAG
**
600407 TTTAAACTTTAAATGAGACATGC
453 TTTGCACTTTAAATGAGACATGC
* * * *
600430 ATTGATTCTAGTAAAAGTCTCCACTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCCTTG
1 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTA
* * *
600495 GGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCCCCGTTATAGATAGAA
66 GGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAA
* *
600560 TCAAAGTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAATCCCCATTTTTTTCTGGATT
131 TCAAAGTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATT
* * * * *
600625 AGGCACCATAAACATATTCTGCTTATATGGATACAAGATATTGAAGCTTTGGTTTCGCAAGATAC
196 AGGCACCATAAACATAGTCTTCTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGATAC
* * * * * * *
600690 GCTTTCTTCCCACCAATTTGTGCAGAGTATGAGTTCATTG-CTCAAATGAGACAAACAGGGATTC
261 GCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTC-GTGCCTCAAATGAGACAAACATGGATTC
* * * * * * * * **
600754 TTGTAGGGATCTTCATTCATTTCGTGATTAGCCACTATAAACCCATTCTCCGCTTTAGGATAAAT
325 TAGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCAT
* * * * *
600819 GATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTAGCCATATTTTCCTTAAAATCGAAGTA
390 GATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTT
*
600884 TGTACTTTAAATGAGACATGC
455 TGCACTTTAAATGAGACATGC
*
600905 ATTGATTCTAGTAAAAGTCTCCATTCTTTTCAAGATT-GCGAACCAAAAACACATT-CTCTTCAT
1 ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAG-GAACCAAAAACACATTCCT-TTCAT
* * * ** * *
600968 TAGGATACATGACATTGATGCTTTGTTGTCACAAGAGAAGCTTTTCTTTCCAATGTTGTTGATAA
64 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAG
* * * * *
601033 AATCAATGTTTGCCTCTTAAATAAGGCAAACTTGAATAGTCATACTAATCCC
129 AATCAAAG-TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCC
601085 AATAGTCTTC
Statistics
Matches: 4032, Mismatches: 406, Indels: 37
0.90 0.09 0.01
Matches are distributed among these distances:
472 2 0.00
473 124 0.03
474 7 0.00
475 2565 0.64
476 1329 0.33
477 5 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (475 bp):
ATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTAGGAACCAAAAACACATTCCTTTCATTA
GGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTGTCTTTCCACCGTTATTGATAGAA
TCAAAGTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCTGGATT
AGGCACCATAAACATAGTCTTCTTATACGGATACATGATATTGATGCTTTGGTTTCGCAAGATAC
GCTTTCTTCCCACCAATTTGTGTAAATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
AGTATGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCATCAGGATGCATG
ATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCATAAAATCAAAGTTT
GCACTTTAAATGAGACATGC
Done.