Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold515
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 459219
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
File 3 of 4
Found at i:308972 original size:19 final size:20
Alignment explanation
Indices: 308956--309040 Score: 84
Period size: 20 Copynumber: 4.2 Consensus size: 20
308946 TTTTATATTT
*
308956 AATAATATTTTAAATATAAA
1 AATAATATTTTAAATATATA
* *
308976 AATTATATTTTAAATAT-TT
1 AATAATATTTTAAATATATA
* *
308995 TATAATATATTAAATATAATA
1 AATAATATTTTAAATAT-ATA
*
309016 AATAATA-TTTAAAAATATA
1 AATAATATTTTAAATATATA
309035 ACATAA
1 A-ATAA
309041 AATATTTATC
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
19 18 0.35
20 27 0.52
21 7 0.13
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (20 bp):
AATAATATTTTAAATATATA
Found at i:308973 original size:39 final size:39
Alignment explanation
Indices: 308929--309025 Score: 126
Period size: 39 Copynumber: 2.5 Consensus size: 39
308919 ATTTAAAAAT
*
308929 AATATAATAATTAAGTATTTT-ATATTTAATAATATTTTA
1 AATATAATAATTAA-TATTTTAATATTTAATAATATATTA
* *
308968 AATATAAAAATT-ATATTTTAAATATTTTATAATATATTA
1 AATATAATAATTAATATTTT-AATATTTAATAATATATTA
*
309007 AATATAATAAATAATATTT
1 AATATAATAATTAATATTT
309026 AAAAATATAA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
37 6 0.12
38 1 0.02
39 37 0.74
40 6 0.12
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (39 bp):
AATATAATAATTAATATTTTAATATTTAATAATATATTA
Found at i:309034 original size:22 final size:22
Alignment explanation
Indices: 309006--309048 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
308996 ATAATATATT
*
309006 AAATATAATA-AATAATATTTAA
1 AAATATAACATAA-AATATTTAA
309028 AAATATAACATAAAATATTTA
1 AAATATAACATAAAATATTTA
309049 TCTTAAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (22 bp):
AAATATAACATAAAATATTTAA
Found at i:309423 original size:11 final size:11
Alignment explanation
Indices: 309389--309438 Score: 64
Period size: 11 Copynumber: 4.4 Consensus size: 11
309379 CTATGCCAAG
309389 AAAAAAGAAAA
1 AAAAAAGAAAA
* *
309400 AGAAAGGTAAAA
1 AAAAAAG-AAAA
309412 AATAAAAGAAAA
1 AA-AAAAGAAAA
309424 AAAAAAGAAAA
1 AAAAAAGAAAA
309435 AAAA
1 AAAA
309439 TACGATCTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 18 0.55
12 11 0.33
13 4 0.12
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:309424 original size:25 final size:24
Alignment explanation
Indices: 309391--309440 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
309381 ATGCCAAGAA
* **
309391 AAAAGAAAAAGAAAGGTAAAAAAT
1 AAAAGAAAAAAAAAGAAAAAAAAT
309415 AAAAGAAAAAAAAAAGAAAAAAAAT
1 AAAAG-AAAAAAAAAGAAAAAAAAT
309440 A
1 A
309441 CGATCTAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (24 bp):
AAAAGAAAAAAAAAGAAAAAAAAT
Found at i:309435 original size:24 final size:24
Alignment explanation
Indices: 309391--309437 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
309381 ATGCCAAGAA
* * *
309391 AAAAGAAAAAGAAAGGTAAAAAAT
1 AAAAGAAAAAAAAAAGAAAAAAAT
309415 AAAAGAAAAAAAAAAGAAAAAAA
1 AAAAGAAAAAAAAAAGAAAAAAA
309438 ATACGATCTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (24 bp):
AAAAGAAAAAAAAAAGAAAAAAAT
Found at i:309852 original size:2 final size:2
Alignment explanation
Indices: 309845--309873 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
309835 CTACAAAATT
309845 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
309874 TTGCTTCTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:311694 original size:13 final size:14
Alignment explanation
Indices: 311676--311710 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
311666 TGATATATAA
311676 TAAATTTAAAT-TT
1 TAAATTTAAATATT
311689 TAAATTTAAATATT
1 TAAATTTAAATATT
311703 TATAATTT
1 TA-AATTT
311711 TTTTTTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 11 0.55
14 4 0.20
15 5 0.25
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TAAATTTAAATATT
Found at i:312158 original size:16 final size:17
Alignment explanation
Indices: 312132--312165 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
312122 AATATAAATC
312132 AAATCAAAAATATATTT
1 AAATCAAAAATATATTT
*
312149 AAAT-AAAAATATTTTT
1 AAATCAAAAATATATTT
312165 A
1 A
312166 TTATTTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATCAAAAATATATTT
Found at i:312748 original size:31 final size:34
Alignment explanation
Indices: 312698--312788 Score: 104
Period size: 31 Copynumber: 2.8 Consensus size: 34
312688 ACGGCACAGA
312698 AATAT-AATA-ATATTAAAAATATAAATACGATAT
1 AATATAAATATATATT-AAAATATAAATACGATAT
*
312731 AA-ATAAAT-T-TATTAAAATAT-AATATGATAT
1 AATATAAATATATATTAAAATATAAATACGATAT
*
312761 AATATAAATATATATTTATAATATAAAT
1 AATATAAATATATA-TTAAAATATAAAT
312789 TATTAATATA
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
30 11 0.22
31 13 0.27
32 7 0.14
33 7 0.14
34 8 0.16
35 3 0.06
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.38
Consensus pattern (34 bp):
AATATAAATATATATTAAAATATAAATACGATAT
Found at i:317749 original size:30 final size:31
Alignment explanation
Indices: 317715--317773 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
317705 TTTGTTTTTC
*
317715 AAATTTAAAAAGA-AATAATAAGATATTTGA
1 AAATTTAAAAAGATAAAAATAAGATATTTGA
* *
317745 AAATTTAAAATGATAAAAATAATATATTT
1 AAATTTAAAAAGATAAAAATAAGATATTT
317774 TTTAAGTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 12 0.48
31 13 0.52
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (31 bp):
AAATTTAAAAAGATAAAAATAAGATATTTGA
Found at i:324411 original size:15 final size:16
Alignment explanation
Indices: 324380--324412 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
324370 GATAATTATG
*
324380 TTTAAATTATTATATA
1 TTTAAATTATGATATA
324396 TTTAAATT-TGATATA
1 TTTAAATTATGATATA
324411 TT
1 TT
324413 ATATAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TTTAAATTATGATATA
Found at i:324412 original size:22 final size:22
Alignment explanation
Indices: 324387--324441 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 22
324377 ATGTTTAAAT
*
324387 TATTATATATTTAAATTTGATA
1 TATTATATATTTAAATTTGAGA
324409 TATTATATA---AAATTTGAGA
1 TATTATATATTTAAATTTGAGA
324428 TATTAATATATTTA
1 TATT-ATATATTTA
324442 TATCATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 13 0.46
20 5 0.18
22 9 0.32
23 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (22 bp):
TATTATATATTTAAATTTGAGA
Found at i:324451 original size:11 final size:11
Alignment explanation
Indices: 324435--324480 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
324425 AGATATTAAT
324435 ATATTTATATC
1 ATATTTATATC
324446 ATATTTATAT-
1 ATATTTATATC
* *
324456 ATTTTTTATATT
1 A-TATTTATATC
324468 ATATTTATATC
1 ATATTTATATC
324479 AT
1 AT
324481 GTAATTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
10 1 0.03
11 28 0.93
12 1 0.03
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (11 bp):
ATATTTATATC
Found at i:324457 original size:27 final size:26
Alignment explanation
Indices: 324385--324458 Score: 62
Period size: 27 Copynumber: 2.8 Consensus size: 26
324375 TTATGTTTAA
*
324385 ATTAT-TATATATTTAAAT-TTGATAT
1 ATTATATA-ATATTTAAATATTAATAT
* *
324410 ATTATATAAAATTTGAGATATTAATAT
1 ATTATATAATATTT-AAATATTAATAT
* *
324437 ATTTATATCATATTTATATATT
1 A-TTATATAATATTTAAATATT
324459 TTTTATATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
25 10 0.26
26 5 0.13
27 13 0.33
28 11 0.28
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (26 bp):
ATTATATAATATTTAAATATTAATAT
Found at i:324731 original size:22 final size:25
Alignment explanation
Indices: 324706--324773 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
324696 TTAAAATATG
324706 AATTTAT-T-TATTATTTATA-TTA
1 AATTTATATATATTATTTATATTTA
324728 AATTTATATAGTATTATTTATATTTA
1 AATTTATATA-TATTATTTATATTTA
*
324754 AA-TTAAATAATATTATTTAT
1 AATTTATAT-ATATTATTTAT
324774 CAGATATTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
22 7 0.17
23 1 0.03
25 26 0.65
26 6 0.15
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57
Consensus pattern (25 bp):
AATTTATATATATTATTTATATTTA
Found at i:324748 original size:25 final size:25
Alignment explanation
Indices: 324714--324773 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
324704 TGAATTTATT
* *
324714 TATTATTTATA-TTAAATTTATATAG
1 TATTATTTATATTTAAA-TTAAATAA
324739 TATTATTTATATTTAAATTAAATAA
1 TATTATTTATATTTAAATTAAATAA
324764 TATTATTTAT
1 TATTATTTAT
324774 CAGATATTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 27 0.84
26 5 0.16
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (25 bp):
TATTATTTATATTTAAATTAAATAA
Found at i:325400 original size:33 final size:35
Alignment explanation
Indices: 325336--325406 Score: 85
Period size: 33 Copynumber: 2.1 Consensus size: 35
325326 TAACTTTAAA
* *
325336 TATTTTTTATATCTAAATTATAATATTATATAT-T
1 TATTTTTTATATCTAAATAATAATATAATATATAT
*
325370 TATTTTTT-TAT-TAAATAAATTATATAATATATAT
1 TATTTTTTATATCTAAAT-AATAATATAATATATAT
325404 TAT
1 TAT
325407 ATAATTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
32 5 0.16
33 15 0.47
34 12 0.38
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.58
Consensus pattern (35 bp):
TATTTTTTATATCTAAATAATAATATAATATATAT
Found at i:325865 original size:22 final size:24
Alignment explanation
Indices: 325837--325880 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
325827 TTTAAGTATA
325837 AAAAAAATCAT-AAT-TTAAAAAT
1 AAAAAAATCATAAATATTAAAAAT
*
325859 AAAAAAATTATAAATATTAAAA
1 AAAAAAATCATAAATATTAAAA
325881 TTTTAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 3 0.16
24 6 0.32
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.27
Consensus pattern (24 bp):
AAAAAAATCATAAATATTAAAAAT
Found at i:325899 original size:24 final size:24
Alignment explanation
Indices: 325870--325924 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
325860 AAAAAATTAT
*
325870 AAATATTAAAATTT-TAATTTACGA
1 AAATATTAAAATTTATAA-ATACGA
* *
325894 ATATATCAAAATTTATAAATACGA
1 AAATATTAAAATTTATAAATACGA
325918 AAATATT
1 AAATATT
325925 GAGATATTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.38
Consensus pattern (24 bp):
AAATATTAAAATTTATAAATACGA
Found at i:326736 original size:19 final size:20
Alignment explanation
Indices: 326694--326737 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
326684 AATAATTCAT
*
326694 TTTATATAAATTTTAATATG
1 TTTATATAAATTTTAATATA
* *
326714 TTTATAT-ATTTTTATTATA
1 TTTATATAAATTTTAATATA
326733 TTTAT
1 TTTAT
326738 GTTATTTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTATATAAATTTTAATATA
Found at i:326753 original size:18 final size:19
Alignment explanation
Indices: 326720--326765 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
326710 TATGTTTATA
*
326720 TATTTTT-ATTATATTTATGT
1 TATTTTTCA-TAT-TTTATGG
326740 TATTTTTCATATTTTATGG
1 TATTTTTCATATTTTATGG
326759 TATTTTT
1 TATTTTT
326766 TTCTTATGTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 13 0.54
20 10 0.42
21 1 0.04
ACGTcount: A:0.22, C:0.02, G:0.07, T:0.70
Consensus pattern (19 bp):
TATTTTTCATATTTTATGG
Found at i:331293 original size:20 final size:21
Alignment explanation
Indices: 331242--331293 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
331232 AATAATTTAA
331242 AAATATT-ATATATTTTATAT
1 AAATATTAATATATTTTATAT
*
331262 AAATATTGATATA-TTTATAT
1 AAATATTAATATATTTTATAT
*
331282 AAATTTTAATAT
1 AAATATTAATAT
331294 GTTCATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 24 0.83
21 5 0.17
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
AAATATTAATATATTTTATAT
Found at i:332267 original size:2 final size:2
Alignment explanation
Indices: 332216--332250 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
332206 TTCTTGCATA
332216 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
332251 ATGGGGGCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:332919 original size:20 final size:20
Alignment explanation
Indices: 332894--332959 Score: 96
Period size: 20 Copynumber: 3.3 Consensus size: 20
332884 CAATCAAATC
332894 ATAAAATAATAATTATAATA
1 ATAAAATAATAATTATAATA
* *
332914 ATAAAATAATAATTAAAATC
1 ATAAAATAATAATTATAATA
* *
332934 GTAAAATAATAATTATATTA
1 ATAAAATAATAATTATAATA
332954 ATAAAA
1 ATAAAA
332960 AAATCGAAAC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
ATAAAATAATAATTATAATA
Found at i:333069 original size:3 final size:3
Alignment explanation
Indices: 333061--333094 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
333051 AATGTGTTGG
333061 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
333095 ATTCTTTCAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:333485 original size:10 final size:10
Alignment explanation
Indices: 333461--333486 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
333451 AATATGAGTA
333461 TAAAAATTTT
1 TAAAAATTTT
333471 TAAAAATTTT
1 TAAAAATTTT
333481 TAAAAA
1 TAAAAA
333487 ATTAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
TAAAAATTTT
Found at i:336092 original size:2 final size:2
Alignment explanation
Indices: 336085--336112 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
336075 CCAAAAAGTG
336085 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
336113 GTATTTAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:338496 original size:28 final size:27
Alignment explanation
Indices: 338441--338511 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
338431 GTCACTCATT
* *
338441 TGTTTATCAAAAATGGTGGTTATTTTG
1 TGTTTGTCAAAAATGGTAGTTATTTTG
338468 TGTTTGTCAAAAATGGTAGTT-TCCTTTG
1 TGTTTGTCAAAAATGGTAGTTAT--TTTG
* *
338496 TATTTGTCAAATATGG
1 TGTTTGTCAAAAATGG
338512 AGGCTTGTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.03
27 19 0.50
28 18 0.47
ACGTcount: A:0.25, C:0.07, G:0.21, T:0.46
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTAGTTATTTTG
Found at i:338630 original size:20 final size:20
Alignment explanation
Indices: 338584--338622 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
338574 CTATAAATAG
*
338584 AAGC-TCCCTCCTCCCTCTC
1 AAGCATCCCTCATCCCTCTC
338603 AAGCATCCCTCATCCCTCTC
1 AAGCATCCCTCATCCCTCTC
338623 TTGTATCCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.15, C:0.54, G:0.05, T:0.26
Consensus pattern (20 bp):
AAGCATCCCTCATCCCTCTC
Found at i:343070 original size:28 final size:27
Alignment explanation
Indices: 343015--343080 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
343005 GCCACCCATT
343015 TGTTTGTCAAAAATGGTGGTTATTTTG
1 TGTTTGTCAAAAATGGTGGTTATTTTG
343042 TGTTTGTCAAAAATGGTGGTT-TCCTTTG
1 TGTTTGTCAAAAATGGTGGTTAT--TTTG
*
343070 TATTTGTCAAA
1 TGTTTGTCAAA
343081 TATAGAGGCT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 21 0.58
28 14 0.39
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.47
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTGGTTATTTTG
Found at i:343196 original size:20 final size:19
Alignment explanation
Indices: 343158--343196 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
343148 CTATAAATAG
* *
343158 AAGCTCCCTCCTCCTTCTC
1 AAGCTCCCTCATCCCTCTC
343177 AAGCATCCCTCATCCCTCTC
1 AAGC-TCCCTCATCCCTCTC
343197 TTGTATCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.15, C:0.51, G:0.05, T:0.28
Consensus pattern (19 bp):
AAGCTCCCTCATCCCTCTC
Found at i:343822 original size:6 final size:6
Alignment explanation
Indices: 343806--343835 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
343796 AAGTTTCCAC
343806 TAATAAT TAATAT TAATAT TAATAT TAATA
1 TAAT-AT TAATAT TAATAT TAATAT TAATA
343836 CTATTTGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
TAATAT
Found at i:344265 original size:20 final size:20
Alignment explanation
Indices: 344240--344300 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 20
344230 TCAAAAATCA
*
344240 ATATTATAATAATATAATTT
1 ATATTATAATAATATAATAT
* *
344260 ATATTATAAAAAGATAATAT
1 ATATTATAATAATATAATAT
* * *
344280 ATAATATTATTATATAA-AT
1 ATATTATAATAATATAATAT
344299 AT
1 AT
344301 TAAAAAATAT
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
19 4 0.12
20 29 0.88
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
ATATTATAATAATATAATAT
Found at i:344305 original size:35 final size:35
Alignment explanation
Indices: 344205--344308 Score: 104
Period size: 35 Copynumber: 2.9 Consensus size: 35
344195 TGGTTCATGT
* *
344205 TATATAATATATATTATTTTTATATTCAAAAATCAA
1 TATATAATAT-TATTATTTATATATTAAAAAATCAA
* *
344241 TATTATAATAATATAATTTATAT-TATAAAAAGAT-AA
1 TA-TATAATATTATTATTTATATAT-TAAAAA-ATCAA
* *
344277 TATATAATATTATTATATAAATATTAAAAAAT
1 TATATAATATTATTATTTATATATTAAAAAAT
344309 ATATTTAATT
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
34 2 0.04
35 23 0.41
36 22 0.39
37 9 0.16
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (35 bp):
TATATAATATTATTATTTATATATTAAAAAATCAA
Found at i:345330 original size:14 final size:14
Alignment explanation
Indices: 345298--345335 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
345288 CTGAATTAAA
345298 TTTTTAT-TCATTT
1 TTTTTATATCATTT
345311 TTTTTATAT-ATTAT
1 TTTTTATATCATT-T
345325 TTTTTATATCA
1 TTTTTATATCA
345336 AAAAGTAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.45
14 11 0.50
15 1 0.05
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (14 bp):
TTTTTATATCATTT
Found at i:346745 original size:14 final size:14
Alignment explanation
Indices: 346728--346812 Score: 56
Period size: 14 Copynumber: 6.4 Consensus size: 14
346718 ATATGATATA
346728 AATATAATATATTT
1 AATATAATATATTT
346742 AATA-AATA-A--T
1 AATATAATATATTT
* *
346752 AA-AAAATATAATT
1 AATATAATATATTT
*
346765 AATAAAATATATTT
1 AATATAATATATTT
* * *
346779 -ATTTAAAAATAATT
1 AATAT-AATATATTT
*
346793 AATATGATATATTT
1 AATATAATATATTT
346807 AATATA
1 AATATA
346813 TATTTCATAT
Statistics
Matches: 54, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
9 1 0.02
10 7 0.13
11 1 0.02
12 1 0.02
13 9 0.17
14 32 0.59
15 3 0.06
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (14 bp):
AATATAATATATTT
Found at i:346762 original size:16 final size:16
Alignment explanation
Indices: 346743--346776 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
346733 AATATATTTA
346743 ATAAATAATAAAAAAT
1 ATAAATAATAAAAAAT
* *
346759 ATAATTAATAAAATAT
1 ATAAATAATAAAAAAT
346775 AT
1 AT
346777 TTATTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAATAATAAAAAAT
Found at i:346790 original size:37 final size:39
Alignment explanation
Indices: 346711--346817 Score: 112
Period size: 37 Copynumber: 2.8 Consensus size: 39
346701 TTTTTTTCTG
*
346711 ATAAAAAATATGATATAAATATAATATATTTAATAAATA
1 ATAAAAAATATGATATAAATAAAATATATTTAATAAATA
* *
346750 ATAAAAAATAT-A-ATTAATAAAATATATTTATTTAAA-A
1 ATAAAAAATATGATATAAATAAAATATATTTA-ATAAATA
** ** *
346787 ATAATTAATATGATATATTTAATATATATTT
1 ATAAAAAATATGATATAAATAAAATATATTT
346818 CATATTTATA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
37 26 0.46
38 6 0.11
39 24 0.43
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (39 bp):
ATAAAAAATATGATATAAATAAAATATATTTAATAAATA
Found at i:347074 original size:20 final size:22
Alignment explanation
Indices: 347049--347099 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 22
347039 AGGTGTTTTT
347049 TTATTATAATT-AT-ATTTAAA
1 TTATTATAATTAATAATTTAAA
*
347069 TTATTATATATTAATAATTTATA
1 TTATTATA-ATTAATAATTTAAA
347092 TT-TTATAA
1 TTATTATAA
347100 ACTTTTATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 8 0.30
21 4 0.15
22 7 0.26
23 8 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTATTATAATTAATAATTTAAA
Found at i:351635 original size:28 final size:27
Alignment explanation
Indices: 351583--351651 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 27
351573 CACCCATTTG
* *
351583 TTTGTAAAAAATGGTGGTTATTTTGTA
1 TTTGTCAAAAATGGTAGTTATTTTGTA
351610 TTTGTCAAAAATGGTAGTT-TCCTTTGTA
1 TTTGTCAAAAATGGTAGTTAT--TTTGTA
*
351638 TTTGTCAAATATGG
1 TTTGTCAAAAATGG
351652 AGGCTTGTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 17 0.46
28 19 0.51
ACGTcount: A:0.28, C:0.06, G:0.20, T:0.46
Consensus pattern (27 bp):
TTTGTCAAAAATGGTAGTTATTTTGTA
Found at i:351770 original size:20 final size:20
Alignment explanation
Indices: 351724--351762 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
351714 CTATAAATAG
*
351724 AAGC-TCCCTCCTCCCTCTC
1 AAGCATCCCTCATCCCTCTC
351743 AAGCATCCCTCATCCCTCTC
1 AAGCATCCCTCATCCCTCTC
351763 TTGTATCCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.15, C:0.54, G:0.05, T:0.26
Consensus pattern (20 bp):
AAGCATCCCTCATCCCTCTC
Found at i:356203 original size:28 final size:27
Alignment explanation
Indices: 356148--356213 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
356138 ACCACCCATT
356148 TGTTTGTCAAAAATGGTGGTTATTTTG
1 TGTTTGTCAAAAATGGTGGTTATTTTG
356175 TGTTTGTCAAAAATGGTGGTT-TCCTTTG
1 TGTTTGTCAAAAATGGTGGTTAT--TTTG
*
356203 TATTTGTCAAA
1 TGTTTGTCAAA
356214 TATAGAGGCT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 21 0.58
28 14 0.39
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.47
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTGGTTATTTTG
Found at i:356340 original size:20 final size:20
Alignment explanation
Indices: 356291--356329 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
356281 CTATAAATAG
*
356291 AAGC-TCCCTCCTCCCTCTC
1 AAGCATCCCTCATCCCTCTC
356310 AAGCATCCCTCATCCCTCTC
1 AAGCATCCCTCATCCCTCTC
356330 TTGTATCCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.15, C:0.54, G:0.05, T:0.26
Consensus pattern (20 bp):
AAGCATCCCTCATCCCTCTC
Found at i:356955 original size:6 final size:6
Alignment explanation
Indices: 356939--356974 Score: 63
Period size: 6 Copynumber: 5.8 Consensus size: 6
356929 AAGTTTCCAC
356939 TAATAAT TAATAT TAATAT TAATAT TAATAT TAATA
1 TAAT-AT TAATAT TAATAT TAATAT TAATAT TAATA
356975 CTATTTGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 25 0.86
7 4 0.14
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
TAATAT
Found at i:357435 original size:13 final size:14
Alignment explanation
Indices: 357379--357444 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 14
357369 ATATTCAAAA
*
357379 ATAAATATTATAAT
1 ATAAATATTATTAT
*
357393 ATATAATTTATATTAT
1 ATA-AATAT-TATTAT
* * *
357409 AAAAAGA-TAATAT
1 ATAAATATTATTAT
357422 AT-AATATTATTAT
1 ATAAATATTATTAT
357435 ATAAATATTA
1 ATAAATATTA
357445 AAAAATATAT
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
12 3 0.08
13 13 0.33
14 10 0.26
15 6 0.15
16 7 0.18
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
ATAAATATTATTAT
Found at i:357447 original size:35 final size:35
Alignment explanation
Indices: 357348--357491 Score: 102
Period size: 36 Copynumber: 4.1 Consensus size: 35
357338 TGGTTCATGT
* * *
357348 TATATAATATATATTATTTTTATATTCAAAAATAAA
1 TATATAATATATATTA-TATAATATTAAAAAATAAA
*
357384 TATTATAATATATAATT-TATATTA-TAAAAAGAT-AA
1 TA-TATAATATAT-ATTATATAATATTAAAAA-ATAAA
357419 TATATAATAT-TATTATATAAATATTAAAAAAT--A
1 TATATAATATATATTATAT-AATATTAAAAAATAAA
* * * *
357452 TATTTAATTATCCATATTATAAAAAATTAAAAATTAAA
1 TATATAA-TAT--ATATTATATAATATTAAAAAATAAA
357490 TA
1 TA
357492 AAACATGCTT
Statistics
Matches: 87, Mismatches: 9, Indels: 22
0.74 0.08 0.19
Matches are distributed among these distances:
32 3 0.03
33 11 0.13
34 16 0.18
35 15 0.17
36 19 0.22
37 17 0.20
38 6 0.07
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (35 bp):
TATATAATATATATTATATAATATTAAAAAATAAA
Found at i:358620 original size:2 final size:2
Alignment explanation
Indices: 358613--358649 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
358603 CGAAGGACAA
358613 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
358650 ACTGCACATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:358885 original size:2 final size:2
Alignment explanation
Indices: 358878--358909 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
358868 TCCCATGTAC
358878 TA TA TA TA TA TA TA TA TA TA TA TA GTA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA T
358910 CGATTAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:359917 original size:14 final size:14
Alignment explanation
Indices: 359900--359984 Score: 56
Period size: 14 Copynumber: 6.4 Consensus size: 14
359890 ATATGATATA
359900 AATATAATATATTT
1 AATATAATATATTT
359914 AATA-AATA-A--T
1 AATATAATATATTT
* *
359924 AA-AAAATATAATT
1 AATATAATATATTT
*
359937 AATAAAATATATTT
1 AATATAATATATTT
* * *
359951 -ATTTAAAAATAATT
1 AATAT-AATATATTT
*
359965 AATATGATATATTT
1 AATATAATATATTT
359979 AATATA
1 AATATA
359985 TATTTTATAC
Statistics
Matches: 54, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
9 1 0.02
10 7 0.13
11 1 0.02
12 1 0.02
13 9 0.17
14 32 0.59
15 3 0.06
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.41
Consensus pattern (14 bp):
AATATAATATATTT
Found at i:359934 original size:16 final size:16
Alignment explanation
Indices: 359915--359948 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
359905 AATATATTTA
359915 ATAAATAATAAAAAAT
1 ATAAATAATAAAAAAT
* *
359931 ATAATTAATAAAATAT
1 ATAAATAATAAAAAAT
359947 AT
1 AT
359949 TTATTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATAAATAATAAAAAAT
Found at i:359962 original size:37 final size:39
Alignment explanation
Indices: 359883--359989 Score: 112
Period size: 37 Copynumber: 2.8 Consensus size: 39
359873 TTTTTTTCTG
*
359883 ATAAAAAATATGATATAAATATAATATATTTAATAAATA
1 ATAAAAAATATGATATAAATAAAATATATTTAATAAATA
* *
359922 ATAAAAAATAT-A-ATTAATAAAATATATTTATTTAAA-A
1 ATAAAAAATATGATATAAATAAAATATATTTA-ATAAATA
** ** *
359959 ATAATTAATATGATATATTTAATATATATTT
1 ATAAAAAATATGATATAAATAAAATATATTT
359990 TATACTTATA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
37 26 0.46
38 6 0.11
39 24 0.43
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (39 bp):
ATAAAAAATATGATATAAATAAAATATATTTAATAAATA
Found at i:360247 original size:20 final size:22
Alignment explanation
Indices: 360222--360272 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 22
360212 AGGTGTTTTT
360222 TTATTATAATT-AT-ATTTAAA
1 TTATTATAATTAATAATTTAAA
*
360242 TTATTATATATTAATAATTTATA
1 TTATTATA-ATTAATAATTTAAA
360265 TT-TTATAA
1 TTATTATAA
360273 ATTTATATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 8 0.30
21 4 0.15
22 7 0.26
23 8 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTATTATAATTAATAATTTAAA
Found at i:360263 original size:15 final size:16
Alignment explanation
Indices: 360245--360283 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
360235 ATTTAAATTA
360245 TTATATATTAAT-AAT
1 TTATATATTAATAAAT
*
360260 TTATAT-TTTATAAAT
1 TTATATATTAATAAAT
360275 TTATATATT
1 TTATATATT
360284 TTTATTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 4 0.19
15 15 0.71
16 2 0.10
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTATATATTAATAAAT
Found at i:360293 original size:13 final size:13
Alignment explanation
Indices: 360260--360308 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 13
360250 TATTAATAAT
*
360260 TTATATTTTATAAA
1 TTATATTTT-TATA
360274 TTTATATATTTT-TA
1 -TTATAT-TTTTATA
360288 TTATATTTTTATA
1 TTATATTTTTATA
360301 TTATATTT
1 TTATATTT
360309 ATATCATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
12 4 0.13
13 16 0.52
14 1 0.03
15 7 0.23
16 3 0.10
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TTATATTTTTATA
Found at i:360300 original size:19 final size:18
Alignment explanation
Indices: 360259--360302 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
360249 ATATTAATAA
360259 TTTATA-TTTTATAAATT
1 TTTATATTTTTATAAATT
* *
360276 TATATATTTTTATTATATT
1 TTTATATTTTTA-TAAATT
360295 TTTATATT
1 TTTATATT
360303 ATATTTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 5 0.23
18 5 0.23
19 12 0.55
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATATTTTTATAAATT
Found at i:360320 original size:11 final size:10
Alignment explanation
Indices: 360261--360320 Score: 59
Period size: 11 Copynumber: 5.8 Consensus size: 10
360251 ATTAATAATT
360261 TATATTT-TA
1 TATATTTATA
*
360270 TAAATTTATA
1 TATATTTATA
*
360280 TATTTTTATTA
1 TATATTTA-TA
*
360291 TATTTTTATA
1 TATATTTATA
360301 TTATATTTATA
1 -TATATTTATA
360312 TCATATTTA
1 T-ATATTTA
360321 AAATAATATA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 6 0.14
10 11 0.26
11 26 0.60
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (10 bp):
TATATTTATA
Found at i:361606 original size:4 final size:4
Alignment explanation
Indices: 361599--361628 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
361589 TAATTAATTA
361599 ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
361629 GCAAAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
ATTT
Found at i:369593 original size:2 final size:2
Alignment explanation
Indices: 369539--369575 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
369529 AGGCAAACAG
369539 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
369576 TTCAATGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:370275 original size:2 final size:2
Alignment explanation
Indices: 370268--370308 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
370258 GTTTCACTCA
370268 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
370309 TTTCTTAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:370634 original size:14 final size:13
Alignment explanation
Indices: 370610--370647 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
370600 CATCAGAATT
370610 TTTTTAAAAAATA
1 TTTTTAAAAAATA
370623 TTTTTAACAAAATA
1 TTTTTAA-AAAATA
370637 TATTTTAAAAA
1 T-TTTTAAAAA
370648 TTTTAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.30
14 10 0.43
15 6 0.26
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (13 bp):
TTTTTAAAAAATA
Found at i:370853 original size:16 final size:16
Alignment explanation
Indices: 370819--370865 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
370809 TATTTTATGT
*
370819 AATTATATTATATTTAA
1 AATTATATT-TATTAAA
370836 AATTATATTTATTAAA
1 AATTATATTTATTAAA
* *
370852 AATAAAATTTATTA
1 AATTATATTTATTA
370866 TATTATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AATTATATTTATTAAA
Found at i:370966 original size:12 final size:12
Alignment explanation
Indices: 370949--370996 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
370939 AATATCAATA
370949 ACATTATAAATT
1 ACATTATAAATT
*
370961 ACATTATATAATA
1 ACATTATA-AATT
370974 ACAATTATAATATT
1 AC-ATTATAA-ATT
*
370988 ATATTATAA
1 ACATTATAA
370997 TCTATAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 8 0.27
13 13 0.43
14 9 0.30
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (12 bp):
ACATTATAAATT
Found at i:370973 original size:25 final size:28
Alignment explanation
Indices: 370940--370995 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 28
370930 ATTATAATAA
370940 ATATCAATAAC-ATTATAA-ATTACATT
1 ATATCAATAACAATTATAATATTACATT
*
370966 ATAT-AATAACAATTATAATATTATATT
1 ATATCAATAACAATTATAATATTACATT
370993 ATA
1 ATA
370996 ATCTATAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 6 0.22
26 11 0.41
27 10 0.37
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (28 bp):
ATATCAATAACAATTATAATATTACATT
Found at i:370980 original size:14 final size:13
Alignment explanation
Indices: 370940--370982 Score: 52
Period size: 12 Copynumber: 3.2 Consensus size: 13
370930 ATTATAATAA
370940 ATATCAATAACATT
1 ATAT-AATAACATT
*
370954 ATA-AATTACATT
1 ATATAATAACATT
370966 ATATAATAACAATT
1 ATATAATAAC-ATT
370980 ATA
1 ATA
370983 ATATTATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 11 0.44
13 5 0.20
14 9 0.36
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.37
Consensus pattern (13 bp):
ATATAATAACATT
Found at i:370988 original size:22 final size:22
Alignment explanation
Indices: 370929--370996 Score: 59
Period size: 22 Copynumber: 3.0 Consensus size: 22
370919 TATTATTATT
*
370929 AATTATAATA-AATATCAATAAC
1 AATTATAATATTATAT-AATAAC
370951 -ATTATAAATTACATTATATAATAAC
1 AATTAT-AA-T--ATTATATAATAAC
*
370976 AATTATAATATTATATTATAA
1 AATTATAATATTATATAATAA
370997 TCTATAATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
21 5 0.13
22 13 0.34
23 1 0.03
24 1 0.03
25 9 0.24
26 9 0.24
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (22 bp):
AATTATAATATTATATAATAAC
Found at i:371301 original size:11 final size:11
Alignment explanation
Indices: 371285--371309 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
371275 TATTAACATA
371285 AAATATTTTTT
1 AAATATTTTTT
371296 AAATATTTTTT
1 AAATATTTTTT
371307 AAA
1 AAA
371310 AATAAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
AAATATTTTTT
Found at i:371348 original size:18 final size:18
Alignment explanation
Indices: 371319--371377 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 18
371309 AAATAAATAA
* *
371319 TAAATTTAAATTTAAATAT
1 TAAACTTAAA-TTAAATTT
371338 TAAAC-TAAATTAAATTT
1 TAAACTTAAATTAAATTT
*
371355 TTAACTTAAAATTAAATTT
1 TAAACTT-AAATTAAATTT
371374 TAAA
1 TAAA
371378 ATTTTTTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 11 0.32
18 5 0.15
19 18 0.53
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
TAAACTTAAATTAAATTT
Found at i:372229 original size:21 final size:21
Alignment explanation
Indices: 372199--372289 Score: 69
Period size: 21 Copynumber: 4.3 Consensus size: 21
372189 ATCATTGATT
* * *
372199 TTAATTTTATTATTATAATAC
1 TTAATCTTATCATTACAATAC
* *
372220 TTAATCTTATCGTTACATTAC
1 TTAATCTTATCATTACAATAC
* *
372241 TTAAT-TTCATCATTACATTAT
1 TTAATCTT-ATCATTACAATAC
* *
372262 TTAATCTTATTATTAAAATAAC
1 TTAATCTTATCATTACAAT-AC
372284 -TAATCT
1 TTAATCT
372290 CACGTGCATC
Statistics
Matches: 56, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
20 2 0.04
21 51 0.91
22 3 0.05
ACGTcount: A:0.36, C:0.12, G:0.01, T:0.51
Consensus pattern (21 bp):
TTAATCTTATCATTACAATAC
Found at i:372412 original size:21 final size:21
Alignment explanation
Indices: 372387--372431 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
372377 GATTGAATAA
* *
372387 AAATAGCATGATAGTAAAATT
1 AAATAGCATAATAATAAAATT
**
372408 AAATATTATAATAATAAAATT
1 AAATAGCATAATAATAAAATT
372429 AAA
1 AAA
372432 AAATAATAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (21 bp):
AAATAGCATAATAATAAAATT
Found at i:372439 original size:19 final size:21
Alignment explanation
Indices: 372401--372446 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
372391 AGCATGATAG
*
372401 TAAAATTAAATATTATAATAA
1 TAAAATTAAATATAATAATAA
*
372422 TAAAATTAAA-A-AATAATAG
1 TAAAATTAAATATAATAATAA
372441 TAAAAT
1 TAAAAT
372447 GTGCGTTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 12 0.52
20 1 0.04
21 10 0.43
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (21 bp):
TAAAATTAAATATAATAATAA
Found at i:373002 original size:13 final size:13
Alignment explanation
Indices: 372984--373047 Score: 51
Period size: 13 Copynumber: 4.8 Consensus size: 13
372974 AGTTAAAATA
372984 AAAAATAATTATT
1 AAAAATAATTATT
*
372997 AAAAATATTTAATT
1 AAAAATAATT-ATT
*
373011 AAAATATAAATA-T
1 AAAA-ATAATTATT
*
373024 -AAAATAAATAATT
1 AAAAAT-AATTATT
*
373037 AAAAATGATTA
1 AAAAATAATTA
373048 AAATTAAACT
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
11 2 0.05
12 6 0.15
13 14 0.36
14 13 0.33
15 4 0.10
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (13 bp):
AAAAATAATTATT
Found at i:374037 original size:15 final size:17
Alignment explanation
Indices: 374013--374050 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
374003 TCGAATTTTT
*
374013 TATTTTTATTT-A-AAA
1 TATTTATATTTAATAAA
374028 TATTTATATTTAATAAA
1 TATTTATATTTAATAAA
374045 TATTTA
1 TATTTA
374051 AATATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 10 0.50
16 1 0.05
17 9 0.45
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TATTTATATTTAATAAA
Found at i:374903 original size:18 final size:18
Alignment explanation
Indices: 374872--374906 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
374862 CTGACTCAAT
374872 GAAAAAAAAAAAGGAAAG
1 GAAAAAAAAAAAGGAAAG
* *
374890 GAAAACAAACAAGGAAA
1 GAAAAAAAAAAAGGAAA
374907 ACCCAACCGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.06, G:0.20, T:0.00
Consensus pattern (18 bp):
GAAAAAAAAAAAGGAAAG
Found at i:378178 original size:21 final size:21
Alignment explanation
Indices: 378154--378195 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
378144 TTTTAAATTT
378154 TTTTAT-ATTAATATTTATATA
1 TTTTATAATTAA-ATTTATATA
*
378175 TTTTATAATTAACTTTATATA
1 TTTTATAATTAAATTTATATA
378196 AAAGTATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTATAATTAAATTTATATA
Found at i:379694 original size:14 final size:14
Alignment explanation
Indices: 379651--379696 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
379641 ATTTTATAAT
379651 TATTTATATGTTAA
1 TATTTATATGTTAA
* ***
379665 TATTTTTATCAAAA
1 TATTTATATGTTAA
379679 TATTTATATGTTAA
1 TATTTATATGTTAA
379693 TATT
1 TATT
379697 ACATGAAATT
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (14 bp):
TATTTATATGTTAA
Found at i:380896 original size:2 final size:2
Alignment explanation
Indices: 380891--380915 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
380881 GACCTAATTC
380891 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
380916 AGACAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:382364 original size:30 final size:29
Alignment explanation
Indices: 382328--382418 Score: 112
Period size: 28 Copynumber: 3.1 Consensus size: 29
382318 AAGAAATTAA
*
382328 TAAAATTATATTTAAATTAAATAATAAAAT
1 TAAAATTATATTTATATTAAATAAT-AAAT
*
382358 TAAAATTATATTTGTATTAAATAAT-AAT
1 TAAAATTATATTTATATTAAATAATAAAT
** * *
382386 TAAAAACATATTTATAGTAAAAAATAAAT
1 TAAAATTATATTTATATTAAATAATAAAT
382415 TAAA
1 TAAA
382419 TAAATAATTA
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 23 0.43
29 7 0.13
30 23 0.43
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.38
Consensus pattern (29 bp):
TAAAATTATATTTATATTAAATAATAAAT
Found at i:382436 original size:17 final size:17
Alignment explanation
Indices: 382403--382453 Score: 52
Period size: 17 Copynumber: 3.0 Consensus size: 17
382393 ATATTTATAG
**
382403 TAAAAA-ATAAATTAAA
1 TAAAAATATAAAAAAAA
382419 TAAATAAT-TAAAAAAAA
1 TAAA-AATATAAAAAAAA
382436 TAAAAATGATAAAAAAAA
1 TAAAAAT-ATAAAAAAAA
382454 GAGATTACCT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 7 0.24
17 13 0.45
18 9 0.31
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (17 bp):
TAAAAATATAAAAAAAA
Found at i:384421 original size:2 final size:2
Alignment explanation
Indices: 384414--384454 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
384404 GAATGAATAC
* *
384414 AT AT AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
384455 ATCTTGTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:385121 original size:22 final size:21
Alignment explanation
Indices: 385096--385136 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
385086 ATATATGTTA
*
385096 ATACAAATTTATATATAAATTG
1 ATACAAATTAATATA-AAATTG
*
385118 ATACAGATTAATATAAAAT
1 ATACAAATTAATATAAAAT
385137 CGAAATGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.37
Consensus pattern (21 bp):
ATACAAATTAATATAAAATTG
Found at i:385197 original size:4 final size:4
Alignment explanation
Indices: 385188--385218 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
385178 TTTAAACCTT
385188 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
385219 TTGTAATTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:385452 original size:19 final size:17
Alignment explanation
Indices: 385418--385456 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
385408 CTTATAAAAG
385418 TTTATTTAATTCATATA
1 TTTATTTAATTCATATA
*
385435 TTTATATTATATTTATATA
1 TTTAT-TTA-ATTCATATA
385454 TTT
1 TTT
385457 TATGTGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 3 0.16
19 11 0.58
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTATTTAATTCATATA
Found at i:385579 original size:11 final size:10
Alignment explanation
Indices: 385563--385628 Score: 59
Period size: 11 Copynumber: 6.7 Consensus size: 10
385553 AATTTATAAA
385563 TTTATATTAT
1 TTTATATTAT
385573 GTTTATATTA-
1 -TTTATATTAT
385583 TTT-TA-TAT
1 TTTATATTAT
*
385591 TTTATTTTAT
1 TTTATATTAT
385601 TTTA-ATTATT
1 TTTATATTA-T
*
385611 TTTTTATTAT
1 TTTATATTAT
385621 ATTTATAT
1 -TTTATAT
385629 CATATAATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
7 2 0.04
8 5 0.11
9 7 0.16
10 12 0.27
11 19 0.42
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (10 bp):
TTTATATTAT
Found at i:385600 original size:17 final size:16
Alignment explanation
Indices: 385574--385618 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
385564 TTATATTATG
*
385574 TTTATATTATTTTATAT
1 TTTATTTTATTTTA-AT
385591 TTTATTTTATTTTAAT
1 TTTATTTTATTTTAAT
*
385607 TATTTTTTTATT
1 T-TTATTTTATT
385619 ATATTTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 3 0.12
17 22 0.88
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTATTTTATTTTAAT
Found at i:386143 original size:11 final size:11
Alignment explanation
Indices: 386122--386151 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
386112 AATCACTCAC
386122 ATTTAATTTTTA
1 ATTT-ATTTTTA
386134 ATTTATTTTTA
1 ATTTATTTTTA
386145 ATTTATT
1 ATTTATT
386152 GATATCATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
ATTTATTTTTA
Found at i:386181 original size:6 final size:6
Alignment explanation
Indices: 386165--386211 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
386155 ATCATGTCTA
* * * *
386165 AAATA- AAATAT AAATAT AAATAT TATTAT AAATAT ATATAT ATATAT
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT
386212 GACGATAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
5 5 0.14
6 31 0.86
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (6 bp):
AAATAT
Found at i:386442 original size:27 final size:25
Alignment explanation
Indices: 386400--386463 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 25
386390 ATTTAATTCA
386400 TATT-AAA-TTAATTTTAAATAAATT
1 TATTAAAATTTAATTTTAAAT-AATT
386424 T-TTAATAATTTAATATTTAAATAATT
1 TATTAA-AATTTAAT-TTTAAATAATT
386450 TAATTAAAATTTAA
1 T-ATTAAAATTTAA
386464 ATAAAAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
23 2 0.06
24 2 0.06
25 2 0.06
26 10 0.29
27 14 0.41
28 4 0.12
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (25 bp):
TATTAAAATTTAATTTTAAATAATT
Found at i:387043 original size:22 final size:22
Alignment explanation
Indices: 387000--387144 Score: 67
Period size: 23 Copynumber: 6.7 Consensus size: 22
386990 ATTAAAAAAA
* * *
387000 TAAAATTTAAATTTA-TTCAAT
1 TAAAATTTAAAATAATTTAAAT
387021 TAAAATTTAAAATAATTTAAATT
1 TAAAATTTAAAATAATTTAAA-T
* *
387044 TAAATTTTAAAATGA--T--A-
1 TAAAATTTAAAATAATTTAAAT
* *
387061 T-AATTTTAAATTAATTTAAATT
1 TAAAATTTAAAATAATTTAAA-T
* *
387083 TAAAA-CT-AAATAATTTTAATTGAC
1 TAAAATTTAAAATAA-TTTAA---AT
387107 TAAAATTT-AAATAATTTAAAT
1 TAAAATTTAAAATAATTTAAAT
*
387128 ATTAAATTTAAAATAAT
1 -TAAAATTTAAAATAAT
387145 CCGAAATGTT
Statistics
Matches: 94, Mismatches: 14, Indels: 30
0.68 0.10 0.22
Matches are distributed among these distances:
16 11 0.12
17 1 0.01
18 1 0.01
19 1 0.01
20 1 0.01
21 20 0.21
22 18 0.19
23 23 0.24
24 10 0.11
25 8 0.09
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.44
Consensus pattern (22 bp):
TAAAATTTAAAATAATTTAAAT
Found at i:387048 original size:15 final size:16
Alignment explanation
Indices: 387003--387048 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
386993 AAAAAAATAA
*
387003 AATTTAAATTT-ATTC
1 AATTTAAATTTAAATC
*
387018 AATTAAAATTTAAAAT-
1 AATTTAAATTT-AAATC
387034 AATTTAAATTTAAAT
1 AATTTAAATTTAAAT
387049 TTTAAAATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 14 0.54
16 10 0.38
17 2 0.08
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
AATTTAAATTTAAATC
Found at i:387052 original size:23 final size:23
Alignment explanation
Indices: 387020--387072 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
387010 ATTTATTCAA
* *
387020 TTAAAATTTAAAATAATTTAAAT
1 TTAAATTTTAAAATAATATAAAT
* *
387043 TTAAATTTTAAAATGATATAATT
1 TTAAATTTTAAAATAATATAAAT
387066 TTAAATT
1 TTAAATT
387073 AATTTAAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
TTAAATTTTAAAATAATATAAAT
Found at i:387096 original size:32 final size:33
Alignment explanation
Indices: 387040--387101 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
387030 AAATAATTTA
*
387040 AATTTAAATTTTAAAATGATATAATTTTAAATT
1 AATTTAAATTTTAAAATGAAATAATTTTAAATT
387073 AATTTAAA-TTTAAAACT-AAATAATTTTAA
1 AATTTAAATTTTAAAA-TGAAATAATTTTAA
387102 TTGACTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
32 18 0.67
33 9 0.33
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (33 bp):
AATTTAAATTTTAAAATGAAATAATTTTAAATT
Found at i:388055 original size:14 final size:15
Alignment explanation
Indices: 388029--388072 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
388019 AAGAATAAAA
388029 AAAATTATAAATATT
1 AAAATTATAAATATT
388044 AAAATT-TAAATA-T
1 AAAATTATAAATATT
*
388057 AAACTTATTAAATATT
1 AAAATTA-TAAATATT
388073 GTATTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 6 0.24
14 6 0.24
15 12 0.48
16 1 0.04
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAATTATAAATATT
Found at i:390076 original size:16 final size:16
Alignment explanation
Indices: 390055--390104 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
390045 TACGAATTTT
390055 TTTTTTATGATTTTAA
1 TTTTTTATGATTTTAA
*
390071 TTTTTT-TTATTATTAA
1 TTTTTTATGATT-TTAA
*
390087 -TATTTATGATGTTTAA
1 TTTTTTATGAT-TTTAA
390103 TT
1 TT
390105 ATAATAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
15 8 0.30
16 17 0.63
17 2 0.07
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (16 bp):
TTTTTTATGATTTTAA
Found at i:390368 original size:18 final size:19
Alignment explanation
Indices: 390329--390368 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
390319 AAAAATAATT
390329 AAATATTTTACTTATATTTA
1 AAATATTTTAC-TATATTTA
*
390349 AAATATTTTA-TATTTTTA
1 AAATATTTTACTATATTTA
390367 AA
1 AA
390369 TAAATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (19 bp):
AAATATTTTACTATATTTA
Found at i:390410 original size:20 final size:21
Alignment explanation
Indices: 390373--390412 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
390363 TTTAAATAAA
*
390373 TTTAAATATTTAATAATTTAT
1 TTTAAATATATAATAATTTAT
*
390394 TTTAATTATATAA-AATTTA
1 TTTAAATATATAATAATTTA
390413 ACGTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTAAATATATAATAATTTAT
Found at i:390664 original size:5 final size:5
Alignment explanation
Indices: 390654--390753 Score: 56
Period size: 5 Copynumber: 21.2 Consensus size: 5
390644 AAGAATTAAT
* *
390654 ATATA ATATA AAATA A-A-A ATATA ATAT- AT-TT ATATA ATATTAA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA-T-A ATATA
* * * *
390702 TTAAA AT-TT ATATA ATATT ATA-A ATATA ATTATA ATA-A A-A-A ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA A-TATA ATATA ATATA ATATA
390748 ATATA A
1 ATATA A
390754 ATACTTAATA
Statistics
Matches: 74, Mismatches: 10, Indels: 22
0.70 0.09 0.21
Matches are distributed among these distances:
3 6 0.08
4 14 0.19
5 43 0.58
6 7 0.09
7 4 0.05
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:390688 original size:26 final size:27
Alignment explanation
Indices: 390650--390731 Score: 91
Period size: 26 Copynumber: 3.1 Consensus size: 27
390640 TAAAAAGAAT
* *
390650 TAATATA-TAATATAA-AATAAAAATA
1 TAATATATTTATATAATATTAAAAATA
*
390675 TAATATATTTATATAATATTAAATATA
1 TAATATATTTATATAATATTAAAAATA
*
390702 TTAA-A-ATTTATATAATATTATAAATA
1 -TAATATATTTATATAATATTAAAAATA
390728 TAAT
1 TAAT
390732 TATAATAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
25 10 0.21
26 26 0.54
27 9 0.19
28 3 0.06
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
TAATATATTTATATAATATTAAAAATA
Found at i:390756 original size:18 final size:18
Alignment explanation
Indices: 390654--390756 Score: 54
Period size: 18 Copynumber: 5.8 Consensus size: 18
390644 AAGAATTAAT
390654 ATATAATATAAA-ATAAAA
1 ATATAATATAAATA-AAAA
** * *
390672 ATATAATATATTTATATA
1 ATATAATATAAATAAAAA
* *
390690 ATATTAA-ATATAT-TAAA
1 ATA-TAATATAAATAAAAA
* * *
390707 AT-TTATATAATATTATAA
1 ATATAATATAA-ATAAAAA
390725 ATATAAT-TATAATAAAAA
1 ATATAATATA-AATAAAAA
390743 ATATAATATAAATA
1 ATATAATATAAATA
390757 CTTAATATTT
Statistics
Matches: 64, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
15 2 0.03
16 3 0.05
17 7 0.11
18 42 0.66
19 10 0.16
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATATAATATAAATAAAAA
Found at i:392482 original size:2 final size:2
Alignment explanation
Indices: 392475--392500 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
392465 ACATATTGTT
392475 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
392501 GGTATTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:394097 original size:15 final size:15
Alignment explanation
Indices: 394077--394106 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
394067 ATTATTATTT
394077 AAATCAAATTCAATA
1 AAATCAAATTCAATA
*
394092 AAATCAAATTGAATA
1 AAATCAAATTCAATA
394107 CAGAGATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.60, C:0.10, G:0.03, T:0.27
Consensus pattern (15 bp):
AAATCAAATTCAATA
Found at i:395931 original size:20 final size:21
Alignment explanation
Indices: 395899--395946 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
395889 ATATTTCTTG
395899 AAGTATAGTAAAAATAATAAT
1 AAGTATAGTAAAAATAATAAT
395920 AAGTAT-GTAAAAATAATAAT
1 AAGTATAGTAAAAATAATAAT
*
395940 AAATATA
1 AAGTATA
395947 TGATAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 19 0.76
21 6 0.24
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.29
Consensus pattern (21 bp):
AAGTATAGTAAAAATAATAAT
Found at i:396791 original size:13 final size:13
Alignment explanation
Indices: 396773--396809 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
396763 AAAATTAAAA
396773 AATATTTTATATT
1 AATATTTTATATT
396786 AATA-TTTATTATT
1 AATATTTTA-TATT
396799 AA-ATTTTATAT
1 AATATTTTATAT
396810 AAAAAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 8 0.36
13 14 0.64
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
AATATTTTATATT
Found at i:400212 original size:60 final size:60
Alignment explanation
Indices: 400119--400237 Score: 220
Period size: 60 Copynumber: 2.0 Consensus size: 60
400109 TTGTGGGGAC
*
400119 CGATCAACCGAATAGCGAGTACTCTGCAAGGGAGAAGGTGAACCAGGTTCTGGTTTAGCA
1 CGATCAACCGAATAGCGAGTACTCTGCAAGGGAGAAGGTGAACCAGGCTCTGGTTTAGCA
*
400179 CGATCAACCGAATAGCGAGTACTCTGCAAGGGAGAGGGTGAACCAGGCTCTGGTTTAGC
1 CGATCAACCGAATAGCGAGTACTCTGCAAGGGAGAAGGTGAACCAGGCTCTGGTTTAGC
400238 CAGTCCCCTG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.29, C:0.21, G:0.31, T:0.19
Consensus pattern (60 bp):
CGATCAACCGAATAGCGAGTACTCTGCAAGGGAGAAGGTGAACCAGGCTCTGGTTTAGCA
Found at i:402471 original size:23 final size:24
Alignment explanation
Indices: 402429--402473 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
402419 TCAGAATTTG
* *
402429 GTTTATTTTTTATTTTTATATAAT
1 GTTTATTTTTTAATTATATATAAT
402453 GTTTA-TTTTTAATTATATATA
1 GTTTATTTTTTAATTATATATA
402474 TATTTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (24 bp):
GTTTATTTTTTAATTATATATAAT
Found at i:404796 original size:16 final size:15
Alignment explanation
Indices: 404756--404799 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 15
404746 AATTTTTAAT
404756 TTATATATAAATAAA
1 TTATATATAAATAAA
404771 TTATAGTATAAATCAATA
1 TTATA-TATAAAT-AA-A
404789 TT-TATATAAAT
1 TTATATATAAAT
404800 TATAGTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 5 0.19
16 14 0.54
17 4 0.15
18 3 0.12
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (15 bp):
TTATATATAAATAAA
Found at i:404984 original size:23 final size:24
Alignment explanation
Indices: 404958--405002 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
404948 TATATTTATT
404958 TTTAAAATTTTGATTTA-AATTAA
1 TTTAAAATTTTGATTTATAATTAA
404981 TTTAAAATTTTGATTTATAATT
1 TTTAAAATTTTGATTTATAATT
405003 TTAAAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (24 bp):
TTTAAAATTTTGATTTATAATTAA
Found at i:405002 original size:13 final size:13
Alignment explanation
Indices: 404958--405004 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
404948 TATATTTATT
404958 TTTAAAATTTTGA
1 TTTAAAATTTTGA
*
404971 TTT-AAA--TTAA
1 TTTAAAATTTTGA
404981 TTTAAAATTTTGA
1 TTTAAAATTTTGA
*
404994 TTTATAATTTT
1 TTTAAAATTTT
405005 AAAAATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
10 6 0.21
11 3 0.11
12 3 0.11
13 16 0.57
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (13 bp):
TTTAAAATTTTGA
Found at i:405207 original size:2 final size:2
Alignment explanation
Indices: 405200--405236 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
405190 CTCTGTAAGA
405200 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
405237 GAGAGGAGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:406221 original size:2 final size:2
Alignment explanation
Indices: 406216--406246 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
406206 TATCTTAGTC
406216 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
406247 CACATCTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:406538 original size:29 final size:28
Alignment explanation
Indices: 406490--406548 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 28
406480 TAACATTTGT
*
406490 ATCATATTTATATATTTTTACATGTTATA
1 ATCATATTTAAATATTTTTA-ATGTTATA
*
406519 ATCATATTTAAA-ATATTTTAATTTTATA
1 ATCATATTTAAATAT-TTTTAATGTTATA
406547 AT
1 AT
406549 TTTAATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (28 bp):
ATCATATTTAAATATTTTTAATGTTATA
Found at i:406665 original size:11 final size:11
Alignment explanation
Indices: 406592--406668 Score: 70
Period size: 11 Copynumber: 7.0 Consensus size: 11
406582 TTAACACATT
406592 TATT-TATTTA
1 TATTATATTTA
*
406602 TATTAT-TTAAA
1 TATTATATT-TA
*
406613 TATTTTATTTTA
1 TATTATA-TTTA
406625 TATTATATTT-
1 TATTATATTTA
*
406635 TAATTATTTTTA
1 T-ATTATATTTA
406647 TATTATATTTA
1 TATTATATTTA
*
406658 TATCATATTTA
1 TATTATATTTA
406669 AAATTATAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 11
0.75 0.10 0.15
Matches are distributed among these distances:
10 7 0.13
11 37 0.69
12 8 0.15
13 2 0.04
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTATATTTA
Found at i:406984 original size:18 final size:18
Alignment explanation
Indices: 406963--407005 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
406953 TAAAGAGAGA
* *
406963 ATTAAATATATATAAATT
1 ATTAAATATAAAAAAATT
*
406981 ATTAAATGTAAAAAAATT
1 ATTAAATATAAAAAAATT
406999 -TTAAATA
1 ATTAAATA
407006 CAAATATGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
ATTAAATATAAAAAAATT
Found at i:407744 original size:19 final size:19
Alignment explanation
Indices: 407720--407759 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
407710 ATTAAAAATG
407720 ATGATGACGTGACATTAAC
1 ATGATGACGTGACATTAAC
* *
407739 ATGATGATGTGATATTAAC
1 ATGATGACGTGACATTAAC
407758 AT
1 AT
407760 CCAATCATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.33
Consensus pattern (19 bp):
ATGATGACGTGACATTAAC
Found at i:408567 original size:15 final size:15
Alignment explanation
Indices: 408549--408599 Score: 66
Period size: 15 Copynumber: 3.3 Consensus size: 15
408539 TAATTCAATA
*
408549 TTTTTAAATTTGAAT
1 TTTTTAAATTTAAAT
*
408564 TTTTTGAATTTAAAT
1 TTTTTAAATTTAAAT
408579 TATTTTCAAATTTAAAT
1 T-TTTT-AAATTTAAAT
408596 TTTT
1 TTTT
408600 ATTTTAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
15 14 0.45
16 7 0.23
17 10 0.32
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (15 bp):
TTTTTAAATTTAAAT
Found at i:408615 original size:20 final size:20
Alignment explanation
Indices: 408578--408615 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
408568 TGAATTTAAA
*
408578 TTATTTTCAAATTTAAATTT
1 TTATTTTCAAATTAAAATTT
408598 TTATTTT-AAATTCAAAAT
1 TTATTTTCAAATT-AAAAT
408616 AAAAATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (20 bp):
TTATTTTCAAATTAAAATTT
Found at i:408857 original size:18 final size:17
Alignment explanation
Indices: 408817--408859 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
408807 ATATTATATT
408817 TATATTTAAAATTTTAA
1 TATATTTAAAATTTTAA
*
408834 TGTATTTAATAATTTT-A
1 TATATTTAA-AATTTTAA
408851 TAATATTTA
1 T-ATATTTA
408860 TATGAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
TATATTTAAAATTTTAA
Found at i:411610 original size:10 final size:10
Alignment explanation
Indices: 411595--411644 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
411585 TTAAAATAAT
411595 ATATATTTTA
1 ATATATTTTA
411605 ATATATTTTA
1 ATATATTTTA
*
411615 ATATTTTTTA
1 ATATATTTTA
*
411625 TATTTTATTTTA
1 -A-TATATTTTA
411637 AT-TATTTT
1 ATATATTTT
411645 TTATATCATA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
9 6 0.17
10 20 0.57
11 2 0.06
12 7 0.20
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATATATTTTA
Found at i:411617 original size:22 final size:23
Alignment explanation
Indices: 411591--411655 Score: 66
Period size: 22 Copynumber: 2.9 Consensus size: 23
411581 ATAATTAAAA
411591 TAATATATATTTTA-A-TATATTT
1 TAATATAT-TTTTATATTATATTT
*
411613 TAATAT-TTTTTATATTTTATTT
1 TAATATATTTTTATATTATATTT
*
411635 TAAT-TATTTTTTATATCATAT
1 TAATATA-TTTTTATATTATAT
411656 AATTAAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
20 5 0.14
21 3 0.08
22 16 0.44
23 12 0.33
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65
Consensus pattern (23 bp):
TAATATATTTTTATATTATATTT
Found at i:411646 original size:23 final size:22
Alignment explanation
Indices: 411608--411650 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
411598 TATTTTAATA
411608 TATTTTAATATTTTTTATATTT
1 TATTTTAATATTTTTTATATTT
411630 TATTTTAATTATTTTTTATAT
1 TATTTTAA-TATTTTTTATAT
411651 CATATAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (22 bp):
TATTTTAATATTTTTTATATTT
Done.