genome.fa.s516.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold516
Parameters: 2 7 7 80 10 50 1000
Length:  54616

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2998--3146	52	2.9	52	84	4	203	33	16	15	34	1.91
3135--3159	13	1.9	13	100	0	50	36	16	16	32	1.90
3200--3266	33	2.0	33	88	0	98	40	14	11	32	1.83
3222--3246	13	1.9	13	100	0	50	32	16	16	36	1.90
15014--15284	135	2.0	135	97	0	506	37	15	13	33	1.87
16325--16451	20	5.8	20	70	21	94	40	11	16	31	1.85
16373--16450	20	3.9	20	82	12	99	39	12	15	32	1.85
20466--20520	27	2.0	27	89	0	83	30	16	32	20	1.94
20452--20748	148	2.0	148	96	1	542	32	12	28	25	1.92
22165--22220	20	2.7	21	80	5	69	32	17	10	39	1.84
22185--22238	20	2.6	21	85	2	74	33	16	9	40	1.80
24480--24530	24	2.1	24	100	0	102	19	7	31	41	1.80
25004--25113	26	4.2	26	86	1	139	34	9	16	40	1.80
25002--25105	52	2.0	53	88	1	156	36	9	14	39	1.79
25912--25998	43	2.0	43	100	0	174	27	11	9	51	1.68
26011--26064	20	2.7	19	77	5	63	16	5	3	74	1.16
27527--27552	13	2.0	13	100	0	52	30	15	15	38	1.88
27507--27570	32	2.0	33	90	3	103	28	14	15	42	1.86
27946--28018	20	3.6	20	81	3	101	35	13	19	31	1.91
27964--28039	21	3.7	21	80	3	100	42	11	17	28	1.84
27946--28039	41	2.3	41	98	0	179	39	12	18	29	1.88
28078--28103	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30319--30363	21	2.1	21	84	8	56	53	4	20	22	1.63
32167--32197	15	2.1	15	93	0	53	48	16	22	12	1.80
34279--34316	13	2.9	13	96	0	67	34	18	15	31	1.92
36726--36798	20	3.6	20	81	3	101	35	13	19	31	1.91
36744--36819	21	3.7	21	80	3	100	42	11	17	28	1.84
36726--36819	41	2.3	41	98	0	179	39	12	18	29	1.88
36858--36883	13	2.0	13	100	0	52	38	15	15	30	1.88
38194--38232	18	2.2	18	95	0	69	35	15	7	41	1.76
40109--40133	13	1.9	13	100	0	50	32	16	20	32	1.94
42200--42237	15	2.5	15	91	0	58	13	21	15	50	1.78
45964--46022	32	1.9	30	83	13	75	59	10	10	20	1.58
46282--46352	19	4.0	18	72	25	53	25	12	19	42	1.87
46376--46452	20	3.8	20	79	8	75	28	16	14	40	1.88
48837--49040	79	2.6	79	83	1	239	28	15	30	25	1.96
49058--49188	52	2.5	51	80	6	156	33	10	25	29	1.90
51540--51565	13	2.0	13	100	0	52	38	15	15	30	1.88
51552--51593	21	2.0	21	100	0	84	28	19	9	42	1.82
51618--51735	19	6.7	19	67	24	80	38	14	12	33	1.84
51618--51710	32	2.9	32	98	0	177	38	13	12	34	1.84

Tables:   1

The End!