genome.fa.s517.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold517
Parameters: 2 7 7 80 10 50 1000
Length:  36973

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602--656	20	2.8	19	86	5	65	32	10	14	41	1.81
671--718	20	2.4	20	92	0	78	33	12	12	41	1.80
2417--2445	10	2.7	11	94	5	51	34	13	0	51	1.42
4842--4898	13	3.9	13	76	24	60	35	14	17	33	1.90
4818--4917	19	5.8	18	70	29	76	34	12	17	37	1.86
4820--4922	32	3.1	32	94	4	170	34	11	17	35	1.86
4980--5158	50	3.5	52	90	6	285	36	18	16	27	1.93
5988--6035	21	2.3	20	82	6	60	22	16	16	43	1.87
12730--12776	22	2.2	22	88	11	71	55	4	17	23	1.59
16687--16718	13	2.5	13	100	0	64	34	9	15	40	1.80
19141--19195	20	2.8	19	88	5	74	41	16	12	29	1.85
19237--19296	31	1.9	31	86	3	84	40	16	15	28	1.89
28889--28930	17	2.3	19	92	8	70	83	16	0	0	0.65
30359--30682	29	10.9	29	77	8	219	28	28	16	26	1.97
30359--30691	56	5.6	57	71	12	197	29	28	15	26	1.96
30360--30527	86	2.0	85	86	3	239	28	30	17	23	1.97
30512--30586	35	2.2	35	85	2	107	22	30	10	36	1.88
30577--30728	28	5.3	28	84	5	173	36	28	15	19	1.92
30748--31087	48	7.0	49	84	4	427	24	26	18	30	1.98
30748--31087	149	2.3	145	88	2	493	24	26	18	30	1.98
31842--31869	13	2.2	13	100	0	56	32	7	14	46	1.71
31823--31887	33	2.0	32	90	3	103	35	9	12	43	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31943--32090	51	2.9	51	90	2	233	33	17	18	30	1.94

Tables:   1

The End!