Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold519
Parameters: 2 7 7 80 10 50 1000
Length:  37504

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
256--287
13
2.5
13
100
0
64
21
12
50
15
1.77
2099--2124
13
2.0
13
100
0
52
30
15
15
38
1.88
2080--2142
32
2.0
32
87
6
92
28
15
15
39
1.89
2841--2889
23
2.2
23
82
13
59
34
26
4
34
1.76
2782--2963
90
2.0
91
93
5
316
27
29
6
36
1.82
6861--6891
15
2.1
15
93
0
53
12
22
16
48
1.80
10894--10919
13
2.0
13
100
0
52
30
15
15
38
1.88
14283--14363
10
8.1
10
71
15
51
59
2
0
38
1.11
18767--18830
32
2.0
32
93
0
110
26
20
21
31
1.98
28272--28310
4
9.8
4
100
0
78
25
23
0
51
1.49
28308--28357
2
25.0
2
100
0
100
50
0
0
50
1.00
28466--28561
29
3.3
29
78
8
97
57
5
10
27
1.53
29022--29057
13
2.5
15
86
13
58
61
0
38
0
0.96
29446--29550
7
13.9
7
69
20
52
27
1
2
67
1.15
29432--29521
28
3.3
28
76
15
66
27
3
2
66
1.19
29481--29530
24
2.0
26
84
11
68
24
0
4
72
1.02
29480--29559
42
1.9
42
82
10
101
27
0
3
68
1.06
29501--29531
15
2.0
15
93
6
53
19
0
3
77
0.90
29486--29683
9
23.6
8
66
23
63
28
1
3
66
1.17
29487--29547
17
3.8
16
76
8
61
22
0
4
72
1.04
29484--29547
32
2.0
32
81
6
76
23
0
4
71
1.04
29598--29641
22
2.0
22
86
8
63
29
0
2
68
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29629--29653
10
2.5
10
100
0
50
36
0
0
64
0.94
29597--29683
16
5.5
15
71
22
54
26
1
2
70
1.07
30048--30298
135
1.9
135
84
7
341
41
16
13
28
1.86
30409--30469
27
2.3
26
81
18
72
3
19
4
72
1.18
30421--30470
14
3.6
14
76
15
59
0
22
4
74
0.99
30426--30478
25
2.1
25
82
6
63
3
18
5
71
1.21
30581--30611
13
2.4
13
88
0
53
22
9
0
67
1.19
35425--35521
19
5.8
18
72
27
97
32
12
17
37
1.87
35427--35529
32
3.2
32
97
0
188
33
12
17
35
1.88
35446--35502
13
3.9
13
76
24
60
35
14
17
33
1.90
35574--35598
13
1.9
13
100
0
50
32
16
16
36
1.90
35609--35736
52
2.4
52
93
1
211
35
17
17
29
1.92

Tables:   1

The End!