Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold53
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4419549
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 41486 characters in sequence are not A, C, G, or T
File 1 of 28
Found at i:720 original size:103 final size:101
Alignment explanation
Indices: 568--756 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
558 CGGCCCGGGG
*
568 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
633 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
669 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
734 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
757 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:995 original size:64 final size:64
Alignment explanation
Indices: 916--1037 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
906 ACGTTTGGTT
*
916 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
980 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
1038 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:1545 original size:102 final size:102
Alignment explanation
Indices: 1376--1562 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
1366 GGCCAGGTGC
* *
1376 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
1441 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
1478 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
1541 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
1563 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:1633 original size:64 final size:62
Alignment explanation
Indices: 1473--1648 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
1463 GCTGCGGGCG
* ** *
1473 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
1535 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
1596 CC
62 -C
1598 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
1649 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Found at i:1806 original size:818 final size:811
Alignment explanation
Indices: 57--1812 Score: 2238
Period size: 807 Copynumber: 2.1 Consensus size: 811
47 GGAAAATGAT
* * *
57 GCAACGGTAAGGGACGAACACGTTTGGAGAGGGGAGGGACAGATGCCGGGGAGGGACTCGTTGCA
1 GCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGATGCCGGGGAGGGACTCGTTGCG
* * *
122 CACGCTCGGCCCTACGCATGCTTGGAGGGGGAGGGACGGATGCTTGGGGAGGGACTCGTTGCACA
66 CACGCTTGGCCCTCCGCATGTTTGGAGGGGGAGGGACGGATGCTTGGGGAGGGACTCGTTGCACA
* *
187 CGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCAC
131 CGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTCCTCGGCACCGT----------C
*
252 CGCCGGAGAACCTGACCGGCGGTGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGC
186 CGCCGGAGAACCTGACCGGCGGTGGGGGGAGCCCCGGCGAA--GGGGAGCGGTGT----G--GGC
* *
317 ACGCGATGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACTGCCCCCCCCCTTGGTTGCTCAAG
243 ACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACTG-CCCCCCCCTAGGTTGCTCAAG
* * ** * * *
382 TATCACACCCCCTATAGAGCTTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTC
307 TATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGTCACCAGCGGAAGTGACCACGTTC
*
447 GAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGG
372 GAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAGACCCCACCACCTCGGGCACCCGG
* * * * * *
512 TGCGCGCCACGCCCACCCTCGGGTGCGCGGGGCCGAGGCTCGCACCCGGCCCGGGGGCGCCCTTC
437 CGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACACACCCGGCCCGGGCGCGCCCTGC
*
577 CCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCAC
502 CCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGCCCAC
* * * * *
642 CCTCGGGTGCGGCCAGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGG
567 CCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGGG
* * * * * *
707 CGCCCACCTCGCGGGGCGCCGGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGG
632 CGCACACCTCGCGGAGCGACGGTGCGCGCCTCGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGC
* * *
772 ACCCGGGCGGGAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACAC
697 ACCCGGCCAGGAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACAC
* *
837 CTCGCGGGGCACCGGGTGCGCACCGTTGTCGGGGTACCCAACCGACCGAC
762 CTCGCGGGGCACCGGGTGCGCACAGTTGCCGGGGTACCCAACCGACCGAC
* * *
887 GCAACGCTAAGGGACGAACACGTTTGGTTGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGC
1 GCAACGCTAAGGGACGAACACGTTTGG-AGAGGGGAGGGACGGATGCCGGGGAGGGACTCGTTGC
* * *
952 GCACGCTTGGCCCTCCGCATGTTAGAGAGGGGGGAGGGCCGGATGGTT-GGGAGGGACTCGTTGC
65 GCACGCTTGGCCCTCCGCATGTTTG-GA-GGGGGAGGGACGGATGCTTGGGGAGGGACTCGTTGC
* *
1016 CCACGCTTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTCCTCGGCACCGT-CGCCGGA
128 ACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTCCTCGGCACCGTCCGCCGGA
* *
1080 GAACCTGACCGGCGGTGGGGGGAGCCCCGGCG-A-GTG-GCGG-GT-GGCACGCGACGGGTGCTG
193 GAACCTGACCGGCGGTGGGGGGAGCCCCGGCGAAGGGGAGCGGTGTGGGCACGCGACGGGTGCAG
* *
1140 GGTGGCAGCCCCGCGGGGCACCCCCAGTG-CCCCCCCTAGGTTGCTCAAGTATCACACCCCCTAT
258 GGTGGCAGCCCCGCAGGGCA-CCCCACTGCCCCCCCCTAGGTTGCTCAAGTATCACACCCCCTAT
* * *
1204 AGAGCTTAAG-GGGCATTTCATAT-CCGTTACCAGCGGACAG-GACCACGTTCGAAACAGGGTCG
322 AGAGCTTAAGAGGG-ATTTC-TATGCCGTCACCAGCGGA-AGTGACCACGTTCGAAACAGGGACA
* * * *
1266 GTTTTTCTGCCGCACCTAGGGT-GGCGCAAG-CCCGCACCACCTCGGGCAGCCGGCGCGCGCCTC
384 GTTTTTCTCCCGCACCGAGGGTGGGC-CAAGACCC-CACCACCTCGGGCACCCGGCGCGCGCCAC
*
1329 GCCCACCCTCGGGCGCG-GGCGGCCGAGGCACACCCCCGGCCAGGTGCACGGTGCGCGCCCTGCC
447 GCCCACCCTCGGGCGCGCGG-GGCCGAGGCACACACCCGG-C-----C-CGG-GCGCGCCCTGCC
* *
1393 CGCCCCC-TGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCGGTGCGCGCCTCGCCCA
503 CGCCCCCGT-G-GTGGGGGCGGCCGGGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGCCCA
* *
1457 CCCTCGGCTGCGGGCGGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGG
566 CCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGG
* *
1522 GCGCACGCCAT-GCGGAGC-ACGGTGCGCGCCTCGCCCACCCTGGGGGGTGCGGGGCGGCCGCGG
631 GCGCACACC-TCGCGGAGCGACGGTGCGCGCCTCGCCCACCCT--CGGGTGC-GGGCGGCCGCGG
*
1585 CACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCG
692 CACGCACCCGGCCAGGAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCG
*
1650 CACACCGT-G-GGGAGCACCGGGTGCGCACAGTTGCCGGGGTACCCAACCGACCGGC
757 CACACC-TCGCGGG-GCACCGGGTGCGCACAGTTGCCGGGGTACCCAACCGACCGAC
* * *
1705 GCAACGCTAAGGGAAGAACACGTTCGGAGCGGGGAGGGACGGATGGCCGGGGGAGGGACTCGTTG
1 GCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGAT-GCC-GGGGAGGGACTCGTTG
* ** *
1770 CGCATGCGTTGG-CCTCCGCCCGTTTGGTGTGGGGAGGGACGGA
64 CGCACGC-TTGGCCCTCCGCATGTTTGGAG-GGGGAGGGACGGA
1813 CGGCCTATGT
Statistics
Matches: 815, Mismatches: 81, Indels: 72
0.84 0.08 0.07
Matches are distributed among these distances:
806 10 0.01
807 159 0.20
808 39 0.05
809 7 0.01
813 1 0.00
814 4 0.00
815 41 0.05
816 124 0.15
817 27 0.03
818 158 0.19
819 34 0.04
820 5 0.01
821 39 0.05
830 26 0.03
831 53 0.07
832 71 0.09
833 17 0.02
ACGTcount: A:0.13, C:0.34, G:0.40, T:0.13
Consensus pattern (811 bp):
GCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGATGCCGGGGAGGGACTCGTTGCG
CACGCTTGGCCCTCCGCATGTTTGGAGGGGGAGGGACGGATGCTTGGGGAGGGACTCGTTGCACA
CGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTCCTCGGCACCGTCCGCCGGAGAA
CCTGACCGGCGGTGGGGGGAGCCCCGGCGAAGGGGAGCGGTGTGGGCACGCGACGGGTGCAGGGT
GGCAGCCCCGCAGGGCACCCCACTGCCCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGAG
CTTAAGAGGGATTTCTATGCCGTCACCAGCGGAAGTGACCACGTTCGAAACAGGGACAGTTTTTC
TCCCGCACCGAGGGTGGGCCAAGACCCCACCACCTCGGGCACCCGGCGCGCGCCACGCCCACCCT
CGGGCGCGCGGGGCCGAGGCACACACCCGGCCCGGGCGCGCCCTGCCCGCCCCCGTGGTGGGGGC
GGCCGGGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAG
AACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACACCTCGCGGAGCGA
CGGTGCGCGCCTCGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGG
GCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCTCGCGGGGCACCGGGTGC
GCACAGTTGCCGGGGTACCCAACCGACCGAC
Found at i:10008 original size:20 final size:20
Alignment explanation
Indices: 9985--10031 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
9975 TACAGAAGAA
9985 TCTAGAACACTT-TGGAATGT
1 TCTAGAA-ACTTCTGGAATGT
**
10005 TCTAGAATGTTCTGGAATGT
1 TCTAGAAACTTCTGGAATGT
10025 TCTAGAA
1 TCTAGAA
10032 TATCATGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (20 bp):
TCTAGAAACTTCTGGAATGT
Found at i:10014 original size:10 final size:10
Alignment explanation
Indices: 9999--10072 Score: 62
Period size: 10 Copynumber: 7.4 Consensus size: 10
9989 GAACACTTTG
9999 GAATGTTCTA
1 GAATGTTCTA
*
10009 GAATGTTCTG
1 GAATGTTCTA
10019 GAATGTTCTA
1 GAATGTTCTA
* *
10029 GAAT-ATCATG
1 GAATGTTC-TA
* * *
10039 GAAGGCTCTG
1 GAATGTTCTA
10049 GAA-GATTCTA
1 GAATG-TTCTA
10059 GAATGTTCTA
1 GAATGTTCTA
10069 GAAT
1 GAAT
10073 ATTGTGGGAG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
9 3 0.06
10 46 0.88
11 3 0.06
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (10 bp):
GAATGTTCTA
Found at i:10032 original size:20 final size:20
Alignment explanation
Indices: 9997--10072 Score: 75
Period size: 20 Copynumber: 3.8 Consensus size: 20
9987 TAGAACACTT
9997 TGGAATGTTCTAGAATGTTC
1 TGGAATGTTCTAGAATGTTC
*
10017 TGGAATGTTCTAGAAT-ATC
1 TGGAATGTTCTAGAATGTTC
* * *
10036 ATGGAAGGCTCTGGAA-GATTC
1 -TGGAATGTTCTAGAATG-TTC
*
10057 TAGAATGTTCTAGAAT
1 TGGAATGTTCTAGAAT
10073 ATTGTGGGAG
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
19 2 0.05
20 39 0.91
21 2 0.05
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (20 bp):
TGGAATGTTCTAGAATGTTC
Found at i:10041 original size:40 final size:40
Alignment explanation
Indices: 10005--10102 Score: 126
Period size: 40 Copynumber: 2.5 Consensus size: 40
9995 TTTGGAATGT
*
10005 TCTAGAATG-TTCTGGAATGTTCTAGAATATCATGGAAGGC
1 TCTAGAA-GATTCTAGAATGTTCTAGAATATCATGGAAGGC
* ** *
10045 TCTGGAAGATTCTAGAATGTTCTAGAATATTGTGGGAGGC
1 TCTAGAAGATTCTAGAATGTTCTAGAATATCATGGAAGGC
*
10085 TCTGGAAGATTCTAGAAT
1 TCTAGAAGATTCTAGAAT
10103 AATGTGGAAG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
39 1 0.02
40 51 0.98
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.33
Consensus pattern (40 bp):
TCTAGAAGATTCTAGAATGTTCTAGAATATCATGGAAGGC
Found at i:10385 original size:24 final size:24
Alignment explanation
Indices: 10345--10418 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 24
10335 AGAGAGGCAT
10345 AGAGGA-ATAGAGAGAAAGATATAG
1 AGAGGAGATAGAGAGAAAGATA-AG
*
10369 AGAGGAGATAGAG-GAAAGGTAAG
1 AGAGGAGATAGAGAGAAAGATAAG
* * *
10392 A-AGGTGATAGAGAAGAGAGGTAAG
1 AGAGGAGATAGAG-AGAAAGATAAG
10416 AGA
1 AGA
10419 AGGGAATAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
22 10 0.23
23 3 0.07
24 23 0.53
25 7 0.16
ACGTcount: A:0.50, C:0.00, G:0.39, T:0.11
Consensus pattern (24 bp):
AGAGGAGATAGAGAGAAAGATAAG
Found at i:10402 original size:22 final size:25
Alignment explanation
Indices: 10345--10404 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 25
10335 AGAGAGGCAT
10345 AGAGGA-ATAGAGAGAAAGATATAG
1 AGAGGAGATAGAGAGAAAGATATAG
*
10369 AGAGGAGATAGAG-GAAAGGTA-AG
1 AGAGGAGATAGAGAGAAAGATATAG
*
10392 A-AGGTGATAGAGA
1 AGAGGAGATAGAGA
10405 AGAGAGGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 10 0.31
23 3 0.09
24 13 0.41
25 6 0.19
ACGTcount: A:0.50, C:0.00, G:0.38, T:0.12
Consensus pattern (25 bp):
AGAGGAGATAGAGAGAAAGATATAG
Found at i:15490 original size:20 final size:20
Alignment explanation
Indices: 15467--15513 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
15457 TACAGAAGAA
15467 TCTAGAACACTT-TGGAATGT
1 TCTAGAA-ACTTCTGGAATGT
**
15487 TCTAGAATGTTCTGGAATGT
1 TCTAGAAACTTCTGGAATGT
15507 TCTAGAA
1 TCTAGAA
15514 TATCATGGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (20 bp):
TCTAGAAACTTCTGGAATGT
Found at i:15496 original size:10 final size:10
Alignment explanation
Indices: 15481--15554 Score: 62
Period size: 10 Copynumber: 7.4 Consensus size: 10
15471 GAACACTTTG
15481 GAATGTTCTA
1 GAATGTTCTA
*
15491 GAATGTTCTG
1 GAATGTTCTA
15501 GAATGTTCTA
1 GAATGTTCTA
* *
15511 GAAT-ATCATG
1 GAATGTTC-TA
* * *
15521 GAAGGCTCTG
1 GAATGTTCTA
15531 GAA-GATTCTA
1 GAATG-TTCTA
15541 GAATGTTCTA
1 GAATGTTCTA
15551 GAAT
1 GAAT
15555 ATTGTGGGAG
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
9 3 0.06
10 46 0.88
11 3 0.06
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (10 bp):
GAATGTTCTA
Found at i:15514 original size:20 final size:20
Alignment explanation
Indices: 15479--15554 Score: 75
Period size: 20 Copynumber: 3.8 Consensus size: 20
15469 TAGAACACTT
15479 TGGAATGTTCTAGAATGTTC
1 TGGAATGTTCTAGAATGTTC
*
15499 TGGAATGTTCTAGAAT-ATC
1 TGGAATGTTCTAGAATGTTC
* * *
15518 ATGGAAGGCTCTGGAA-GATTC
1 -TGGAATGTTCTAGAATG-TTC
*
15539 TAGAATGTTCTAGAAT
1 TGGAATGTTCTAGAAT
15555 ATTGTGGGAG
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
19 2 0.05
20 39 0.91
21 2 0.05
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (20 bp):
TGGAATGTTCTAGAATGTTC
Found at i:15523 original size:40 final size:40
Alignment explanation
Indices: 15487--15583 Score: 124
Period size: 40 Copynumber: 2.4 Consensus size: 40
15477 TTTGGAATGT
*
15487 TCTAGAATG-TTCTGGAATGTTCTAGAATATCATGGAAGGC
1 TCTAGAA-GATTCTAGAATGTTCTAGAATATCATGGAAGGC
* ** *
15527 TCTGGAAGATTCTAGAATGTTCTAGAATATTGTGGGAGGC
1 TCTAGAAGATTCTAGAATGTTCTAGAATATCATGGAAGGC
*
15567 TCTGGAAGATTCTAGAA
1 TCTAGAAGATTCTAGAA
15584 CAATGTGGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.02
40 50 0.98
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.32
Consensus pattern (40 bp):
TCTAGAAGATTCTAGAATGTTCTAGAATATCATGGAAGGC
Found at i:18400 original size:402 final size:403
Alignment explanation
Indices: 17527--18808 Score: 1993
Period size: 403 Copynumber: 3.2 Consensus size: 403
17517 TGCAAGCCTT
17527 ACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATC
1 ACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATC
17592 ACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAAT
66 ACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAAT
*
17657 CGAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAAGC-AC
131 CGAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAAC
*
17721 CGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGG
196 CGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGG
* *
17786 CCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGG
261 CCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGG
*
17851 GAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCTGC
326 GAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGC
17916 ACACGCGTGCCAA
391 ACACGCGTGCCAA
17929 ACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATC
1 ACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATC
*
17994 ACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTAGATTTTAAT
66 ACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAAT
18059 CGAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAAC
131 CGAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAAC
18124 CGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGG
196 CGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGG
* *
18189 CCAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGG
261 CCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGG
* *
18254 GAACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACAACCACGCCCCGTTACCCGC
326 GAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGC
18319 ACACGCGTGCCAA
391 ACACGCGTGCCAA
* * * ** * *
18332 CCGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTC
1 ACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATC
* * * *
18396 ACCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAAC
66 ACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAAT
* * * * * * *
18461 CGAGAGGGACACTCTGTCGGGGTGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACA
131 CGAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCA
* * * * *
18526 ACCAGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGCA
194 ACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCA
*
18590 TGGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCATGCCACAACCGGGACTACCAACTCGAATT
258 TGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATT
* * * * *
18654 CGGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCACGACCACGCCCCTTGT
323 CGGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCACGACCACGCCCCGT-T
* *
18717 ACCCCACACACGCGTGCCAT
385 A-CCCGCACACGCGTGCCAA
* * * ** * *
18737 GCGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCC
1 ACGATCGCGCA-CGTA--GCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCC
18801 ATCACCGC
63 ATCACCGC
18809 GACAAGGTTT
Statistics
Matches: 811, Mismatches: 57, Indels: 18
0.92 0.06 0.02
Matches are distributed among these distances:
402 269 0.33
403 350 0.43
404 123 0.15
405 24 0.03
407 36 0.04
408 9 0.01
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.13
Consensus pattern (403 bp):
ACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATC
ACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAAT
CGAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAAC
CGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGG
CCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGG
GAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGC
ACACGCGTGCCAA
Found at i:19970 original size:103 final size:101
Alignment explanation
Indices: 19818--20006 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
19808 CGGCCCGGGG
*
19818 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
19883 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
19919 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
19984 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
20007 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:20246 original size:64 final size:64
Alignment explanation
Indices: 20167--20288 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
20157 CGTTTGGTTG
*
20167 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
20231 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
20289 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:20796 original size:102 final size:102
Alignment explanation
Indices: 20627--20813 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
20617 GGCCAGGTGC
* *
20627 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
20692 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
20729 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
20792 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
20814 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:20884 original size:64 final size:62
Alignment explanation
Indices: 20724--20899 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
20714 GCTGCGGGCG
* ** *
20724 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
20786 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
20847 CC
62 -C
20849 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
20900 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Found at i:27184 original size:418 final size:404
Alignment explanation
Indices: 26388--28780 Score: 1441
Period size: 403 Copynumber: 5.8 Consensus size: 404
26378 CACTCAGCCC
* *
26388 GGGCGCGATCCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAG
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
*
26453 CGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
26518 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
131 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
* * *
26583 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAGCG
196 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
* * * * *
26648 ATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGCCTTCATCACC
261 ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
*
26713 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGA
326 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
26778 GAGGGACACTGCCG
391 GAGGGACACTGCCG
**
26792 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
* * *
26856 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCTTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
* * * *
26920 ACCTGCAGCTTCTGCGC-GCGCCACAACCGGGACCCTCTACTCGATTAGGGGGCTTGGTCCTG-G
130 ACCTGCAGCATCTGC-CTGCACCACAACCGGGACCATCCACTCGA--A-------T--T-C-GAG
* * ** * * * * * *
26983 AGTCGTTGGCGGCATCGGCGCAGGTGCGAGCTTAACCTTCCGGCAGGACCACGCCTCATCTCCCC
181 A-AC-TTGGCAGCATCACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCAT-TACCC
* * *
27048 ACACACGCGGGCCAACCGATCGAGCACATGGTGACCGGGGACCTCGCCACGGATCACTTGGACCG
243 ACACACGCGGGCCAACCGATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCG
27113 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCAT-GCA
308 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGC-TCGCA
* * ** **
27177 TGACCTGGATTTCACA-CGAG-GCAACTGTGGCCG
372 CGACCTGGATTTTA-ATCGAGAGGGACACT-GCCG
* * * * ** ** * * * ** *
27210 GGGCTC-ACACCAAGCCAGGCACATGGTGCAAGACCCTCCCC-ACCCCTCGGA-GGGAAGGGTGG
1 GGGCGCGA-ACCATGCCAGGCGCATGGAGC--G-CAATCCCCGACGGC-C-AACCGGCAGGACGA
* **** * * * * * * ****
27272 GCAGGGCG-CGCACCATG-AAGAGCACACG-G-CGCGCGCCCTGATGGGTAGGGGGCCAA-AAAT
60 ACCCACCGTTGC-CGATGCAAGGGC-CACGAGAC-TGC-CCCTGCT-CG-A-GGGG-CAACGGCC
* * * ** * *** * ** ** ** ** **
27332 ATGG--AATTGTCTGAAAGTG-GGACA-CTTTTTG-ACAAGTACCATTAGAATATATA-TATATA
117 A-GGCCAA--GCCCGCACCTGCAG-CATCTGCCTGCACCACAACC--GGGACCATCCACTCGA-A
** ** ** * * * * * **
27391 TATATATGTAAATCCAAGGGGCCA-CAATCGATGGGAGGACCACG-C-AAGGC-ACCGG---GTG
175 T-TCGA-G--AA--C--TTGG-CAGC-ATC-ACCGCAGGAGCAAGCCTAA-CCTTCCGGCACGAC
* * * * ** * **
27449 CGCG-CCC--TGCCCACACCCGGATGGGTGCGGACGCGGCA-CGCAGAATCCCAG-GCACCGGGT
228 CACGCCCCATTACCCACACAC-G--CGG-GCCAAC-C-G-ATCG-AGCA-CATAGCG-ACC--G-
* * * * * *
27509 GCGCGACCTGCCCTTCGCGGAATAAGCCATGAGGGCC-CG-AGGGCCTCGC--CA-CGGATCGCT
280 G-G-GACCT-CAC--CACGG-ATCA--C-T-TGGACCGCGAAGGGCCTC-CATCACCGCA--GCT
* * *** * * * *
27569 TGG-A-CC-G---CGGAGGGTCCCCGTCACCGC-A-GCTGGGCACGACCTGGATTTCAATCGAGA
332 GGGCATCCGGTCACCGA-AAACCACG--ATCGCAAGGCT-CGCACGACCTGGATTTTAATCGAGA
27626 GGGACACTCTGCCG
393 GGGACA--CTGCCG
* * * * *
27640 GGGCGCGACCCGTGCGAGGAACAGGAACATCGAGCACAATCCCCGACAGG-CAACCGGCAGGACG
1 GGGCGCGAACCATGCCAGG--C--G--CATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACG
** * * *
27704 TGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGC-ATGGCCAGGCCAC
59 AACCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAA
* * * * *
27768 GCCCTCACCTGCAGCATCTGCC-ACGCCACAACCGGGA-CAACCTACTCGAATTCGGGAACTTGG
124 GCCCGCACCTGCAGCATCTGCCTGCACCACAACCGGGACCATCC-ACTCGAATTCGAGAACTTGG
* * * ** * * *
27831 CAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGT
188 CAGCATCACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGG
* * * * * *
27896 GCCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCT
253 GCCAACCGATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCT
*
27961 CCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATT
318 CCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATT
28026 TTAATCGAGAGGGACACTGCCG
383 TTAATCGAGAGGGACACTGCCG
**
28048 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
* *
28112 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
* ** * * *
28176 ACCTGCAGCCTCTGCCCACGCCACAACCGGGACTA-CCGACTCGAATTCGGGAACTTGGCAGCAT
130 ACCTGCAGCATCTGCCTGCACCACAACCGGGACCATCC-ACTCGAATTCGAGAACTTGGCAGCAT
* * ** * * *
28240 CACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAC
194 CACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAAC
* ** * * * *
28305 CGATCGCGCACGCAGAGACCGACGG-CCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTC
259 CGATCGAGCACATAGCGACCG-GGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATC
* * * * *
28368 ACCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAAC
323 ACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAAT
28433 CGAGAGGGACACTCTGCCG
388 CGAGAGGGACA--CTGCCG
* * * * * * * *
28452 GGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAACCGGCGGGACGAGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
* * *
28517 CGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGC-ATGGCCAGGCCAAGCCC-C
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCAACGGCCAGGCCAAGCCCGC
* ** * * * *
28579 ACCTGCAGCTTCTGCCCACGCCACAACCGGGACTA-CCAACTCGAATTCGGGAACTTGGCAGAAT
130 ACCTGCAGCATCTGCCTGCACCACAACCGGGACCATCC-ACTCGAATTCGAGAACTTGGCAGCAT
* * * * * * * * *
28643 CAGCGCAGGTGGAAGCTTAACCCTACGGCACGACCACGCCCCTTGTGCCCCACACACGCGTGCCA
194 CACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCAT-T-ACCCACACACGCGGGCCA
** ** * * *
28708 TGCGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTC
257 ACCGATCGAGCA-CATA--GCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTC
28772 CATCACCGC
319 CATCACCGC
28781 GACAAGGTTT
Statistics
Matches: 1533, Mismatches: 305, Indels: 298
0.72 0.14 0.14
Matches are distributed among these distances:
402 194 0.13
403 311 0.20
404 232 0.15
405 31 0.02
406 16 0.01
407 38 0.02
408 39 0.03
409 9 0.01
410 29 0.02
411 9 0.01
412 8 0.01
413 10 0.01
414 3 0.00
415 4 0.00
416 8 0.01
417 72 0.05
418 176 0.11
419 16 0.01
420 28 0.02
421 44 0.03
422 13 0.01
423 7 0.00
424 15 0.01
425 18 0.01
426 25 0.02
427 14 0.01
428 33 0.02
429 22 0.01
430 29 0.02
431 6 0.00
432 17 0.01
433 34 0.02
434 16 0.01
435 1 0.00
436 6 0.00
ACGTcount: A:0.22, C:0.36, G:0.30, T:0.13
Consensus pattern (404 bp):
GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
GAGGGACACTGCCG
Found at i:28584 original size:403 final size:404
Alignment explanation
Indices: 27605--28780 Score: 1704
Period size: 403 Copynumber: 2.9 Consensus size: 404
27595 CAGCTGGGCA
* * *
27605 CGACCTGGATTTCAATCGAGAGGGACACTCTGCCGGGGCGCGACCCGTGCGAGGAACAGGAACAT
1 CGACCTGGATTT-AATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGG--C--G--CAT
27670 CGAGCACAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAG
59 CGAGCACAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAG
* *
27735 ACTGCCCCTGCCCGAGGGGCATGGCCAGGCCACGCCCTCACCTGCAGCATCTG-CCACGCCACAA
124 ACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCATCTGCCCACGCCACAA
* *
27799 CCGGGACAACCTACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCG
189 CCGGGACTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCG
* * **
27864 GCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGTAGCGACCGGGGGCC
254 GCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCC
* *
27929 TCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAA
319 TCACCACGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAA
*
27994 ACCACGATCGCAAGGCTCGCG
384 ACCACGATCGCAAGGCACGCG
* *
28015 CGACCTGGATTTTAATCGAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
1 CGACCTGGA-TTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATCGAGCA
28078 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
*
28143 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGA
130 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCATCTGCCCACGCCACAACCGGGA
* *
28208 CTACCGACTCGAATTCGGGAACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
195 CTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
*
28273 CCACGCCCCGTTACCCGCACACGCGTGCCAACCGATCGCGCACGCAGAGACCGACGGCCTCACCA
260 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
*
28338 CGGATCACTTGGACCGCGAAGGGTC-CCGTCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
325 CGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
28402 ATCGCAAGGCACGCG
390 ATCGCAAGGCACGCG
* * *
28417 CGACCTGGATCTTAACCGAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCA
1 CGACCTGGAT-TTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATCGAGCA
* * * * *
28482 CAATCCCCGACAGACAACCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
*
28547 CCTGCTC-ACGGGGCATGGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGG
130 CCTGCTCGA-GGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCATCTGCCCACGCCACAACCGGG
* * * *
28610 ACTACCAACTCGAATTCGGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCA
194 ACTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCA
** * ** ** * * *
28673 CGACCACGCCCCTTGTGCCCCACACACGCGTGCCATGCGATCGGCAGCATACGGCGACCG-GGGA
257 CGACCACGCCCC--GTTACCCGCACACGCGTGCCAAACGATC-GC-GCACGCAGAGACCGACGG-
** * *
28737 CCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCATCACCGC
317 CCTCACCACGGATCACTTGGACCGCGAAGGGTCTCCATCACCGC
28781 GACAAGGTTT
Statistics
Matches: 700, Mismatches: 52, Indels: 30
0.90 0.07 0.04
Matches are distributed among these distances:
401 1 0.00
402 195 0.28
403 258 0.37
404 122 0.17
405 23 0.03
406 5 0.01
407 39 0.06
408 31 0.04
410 23 0.03
411 3 0.00
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.12
Consensus pattern (404 bp):
CGACCTGGATTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATCGAGCAC
AATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCC
CTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCATCTGCCCACGCCACAACCGGGAC
TACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGAC
CACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCAC
GGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACGA
TCGCAAGGCACGCG
Found at i:29942 original size:103 final size:101
Alignment explanation
Indices: 29790--29978 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
29780 CGGCCCGGGG
*
29790 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
29855 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
29891 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
29956 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
29979 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:30218 original size:64 final size:64
Alignment explanation
Indices: 30139--30260 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
30129 CGTTTGGTTG
*
30139 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
30203 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
30261 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:30738 original size:808 final size:808
Alignment explanation
Indices: 29173--30712 Score: 1982
Period size: 808 Copynumber: 1.9 Consensus size: 808
29163 CAAAAGCCAC
* * *
29173 GAGCATGGTGCGCGCCCTTCCCGCCCCCAGGGTGGGAGCGGTCGGGGCGCGCACCATGCGGCGCA
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCAGGGTGGGAGCGGTCGGGGCGCACACCATGCGGCGCA
* * *
29238 ATGGGTGCGCACCCTTGCCGGGGTACCCAACCGACCGATGCAACGGTAAGGGACGAACACGTTTG
66 ACGGGTGCGCACCCTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTG
29303 GAGAGGGGAGGGACAGATGCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTTGGA
131 GAGAGGGGAGGGACAGATGCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTTGGA
29368 GGGGGGAGGGACGGATGCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATC
196 GGGGGGAGGGACGGATGCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATC
* *
29433 GGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGGTGG
261 GGTGCCGAATTCGCGGTCCTCGGCACCGT----------CCGCCGGAGAACCTGACCGGCGGTGG
* *
29498 GGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGCAGC
316 GGGGGAGCCCCGGCGAA--GGGGAGCGGTGT----G--GGCACGCGACGGGTGCAGGGTGGCAGC
*
29563 CCCGCAGGGCACCCCACTGCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAA
373 CCCGCAGGGCACCCCACTG-CCCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAA
* * ** * * *
29628 GATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCTCCCG
437 GAGGGATTTCTATGCCGTCACCAGCGGAAGTGACCACGTTCGAAACAGGGACAGTTTTTCTCCCG
* * *
29693 CACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTCGGGT
502 CACCGAGGGTGGGCCAAGACCCCACCACCTCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGC
* * * *
29758 GCGCGGGGCCGAGGCTCGCACCCGGCCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCG
567 GCGCGGGGCCGAGGCACACACCCGGCCCGGGCGCGCCCTGCCCGCCCCCGTGGTGGGGGCGGCCG
* * *
29823 GGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGCACGG
632 GGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGG
*
29888 TGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTG
697 TGCGCGCCCTT-CCGCCCCC---GCTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTG
29953 CGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
758 CGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
* * *
30004 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TCGCGGGG
1 GAGCACGGGGCGCGCCCTTCCCGCCCCC-AGGGTGGGAGCGGTCGGGGCGCACACCAT-GCGGCG
* * *
30068 CACCGGGTGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
64 CAACGGGTGCGCACCCTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
* * * * * * *
30133 TGGTTGGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATG-T
129 TGG--AGAGGGGAGGGACAGATGCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCT
* * * *
30197 TAGAGAGGGGGGAGGGCCGGATGGTT-GGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
192 T-G-GAGGGGGGAGGGACGGATGCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGT
30261 GCTATCGGTGCCGAATTCGCGGTCCTCGGCACCGT-CGCCGGAGAACCTGACCGGCGGT-GGGGG
255 GCTATCGGTGCCGAATTCGCGGTCCTCGGCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGG
* * *
30324 GAGCCCCGGCG-A-GTG-GCGG-GT-GGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCAC
320 GAGCCCCGGCGAAGGGGAGCGGTGTGGGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCA-
*
30384 CCCCAGTG-CCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAG-GGGCATTTCA
384 CCCCACTGCCCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGG-ATTTC-
* * * * *
30447 TAT-CCGTTACCAGCGGACAG-GACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGG
447 TATGCCGTCACCAGCGGA-AGTGACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGG
* *
30510 T-GGCGCAAG-CCCGCACCACCTCGGGCAGCCGGCGCGCGCCTCGCCCACCCTCGGGCGCG-GGC
511 TGGGC-CAAGACCC-CACCACCTCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGG-
*
30572 GGCCGAGGCACACCCCCGGCCAGGTGCACGGTGCGCGCCCTGCCCGCCCCC-TGGTGTGGGGGCG
573 GGCCGAGGCACACACCCGG-C-----C-CGG-GCGCGCCCTGCCCGCCCCCGT-G-GTGGGGGCG
* * * *
30636 GTCGGGGCGCACACCATGCGGAGCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
628 GCCGGGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGA
30701 ACGGTGCGCGCC
693 ACGGTGCGCGCC
30713 TCGCCCACCC
Statistics
Matches: 625, Mismatches: 61, Indels: 60
0.84 0.08 0.08
Matches are distributed among these distances:
807 10 0.02
808 159 0.25
809 39 0.06
810 7 0.01
814 1 0.00
815 4 0.01
816 20 0.03
817 82 0.13
818 2 0.00
821 1 0.00
822 16 0.03
823 23 0.04
831 27 0.04
832 91 0.15
833 2 0.00
834 121 0.19
835 20 0.03
ACGTcount: A:0.13, C:0.34, G:0.39, T:0.14
Consensus pattern (808 bp):
GAGCACGGGGCGCGCCCTTCCCGCCCCCAGGGTGGGAGCGGTCGGGGCGCACACCATGCGGCGCA
ACGGGTGCGCACCCTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTG
GAGAGGGGAGGGACAGATGCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTTGGA
GGGGGGAGGGACGGATGCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATC
GGTGCCGAATTCGCGGTCCTCGGCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCC
CGGCGAAGGGGAGCGGTGTGGGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
GCCCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGTC
ACCAGCGGAAGTGACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAGA
CCCCACCACCTCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACAC
ACCCGGCCCGGGCGCGCCCTGCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAG
CACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCTTCCGCCCCC
GCTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGCGCCTCGCCCGCCCTCTGGTG
CGGGCGGCCGCGGCACGGACCCGGGCGG
Found at i:30975 original size:64 final size:64
Alignment explanation
Indices: 30896--31017 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
30886 CGTTTGGTTG
*
30896 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
30960 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
31018 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:40098 original size:423 final size:409
Alignment explanation
Indices: 39297--40102 Score: 1091
Period size: 423 Copynumber: 1.9 Consensus size: 409
39287 CACTCAGCCC
* *
39297 GGGCGCGATCCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAG
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
*
39362 CGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
39427 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
131 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
* * *
39492 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAGCG
196 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
* * * * *
39557 ATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGCCTTCATCACC
261 ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
*
39622 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGA
326 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
39687 ATCGAGAGGGACACTGCCG
391 ATCGAGAGGGACACTGCCG
**
39706 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
* * *
39770 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCTTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
* * * *
39834 ACCTGCAGCTTCTGCGC-GCGCCACAACCGGGACCCTCTACTCGATTAGGGGGCTTGGTCCTG-G
130 ACCTGCAGCATCTGC-CTGCACCACAACCGGGACCATCCACTCGA--A-------T--T-C-GAG
* * ** * * * * * *
39897 AGTCGTTGGCGGCATCGGCGCAGGTGCGAGCTTAACCTTCCGGCAGGACCACGCCTCATCTCCCC
181 A-AC-TTGGCAGCATCACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCAT-TACCC
* * *
39962 ACACACGCGGGCCAACCGATCGAGCACATGGTGACCGGGGACCTCGCCACGGATCACTTGGACCG
243 ACACACGCGGGCCAACCGATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCG
40027 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCAT-GCA
308 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGC-TCGCA
*
40091 TGACCTGGATTT
372 CGACCTGGATTT
40103 CACACGAGGC
Statistics
Matches: 343, Mismatches: 35, Indels: 24
0.85 0.09 0.06
Matches are distributed among these distances:
408 55 0.16
409 101 0.29
410 3 0.01
417 1 0.00
419 1 0.00
420 3 0.01
421 2 0.01
422 45 0.13
423 131 0.38
424 1 0.00
ACGTcount: A:0.21, C:0.36, G:0.30, T:0.13
Consensus pattern (409 bp):
GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
ATCGAGAGGGACACTGCCG
Found at i:41473 original size:358 final size:358
Alignment explanation
Indices: 40816--41532 Score: 1389
Period size: 358 Copynumber: 2.0 Consensus size: 358
40806 GCGTGCCAAA
40816 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
40881 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
40946 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
41011 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
* *
41076 CAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACAACCGACTCGAATTCGGG
41141 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
41174 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
41239 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
41304 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
*
41369 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
196 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
*
41434 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACAACCGACTCGAATTCGGG
*
41499 AACTTGGCAGCATCACCGCAGGTGCGAGCCTTG
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
41532 C
1 C
41533 CTTCCGGCAC
Statistics
Matches: 354, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
358 354 1.00
ACGTcount: A:0.21, C:0.35, G:0.30, T:0.13
Consensus pattern (358 bp):
CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACAACCGACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTG
Found at i:41946 original size:403 final size:404
Alignment explanation
Indices: 41174--42052 Score: 1268
Period size: 403 Copynumber: 2.2 Consensus size: 404
41164 GCGAGCCTTG
* * ** *
41174 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
1 CGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTCTCCATCA
* * * *
41239 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
66 CCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACC
* * * *
41304 GAGAGGGACACTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACC
131 GAGAGGGACACTGCCGGGGCGCGAACAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAACC
* *
41369 GGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
196 GGCAGGACGAGCCCACCGTTGCCGAAGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
*
41434 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGG
261 CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
* * * * * *
41499 AACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCC-GTTACCCGC
326 AACTTGGCAGAATCACCGCAGGTGCGAGCCTTACCCTACGGCACGACCACGCCCCTGTGACCCAC
41563 ACACGCGTGCCAAC
391 ACACGCGTGCCAAC
*
41577 CGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTCA
1 CGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTCTCCATCA
41641 CCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACC
66 CCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACC
*
41706 GAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAA
131 GAGAGGGACA--CTGCCGGGGCGCGAACAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAA
* *
41771 CCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGCAT
194 CCGGCAGGACGAGCCCACCGTTGCCGAAGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCAT
*
41835 GGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
258 GGCCAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTC
*
41899 GGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCACGACCACGCCCCTTGTG
323 GGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-ACCCTACGGCACGACCACGCCCC-TGTG
* **
41962 CCCCACACACGCGTGCCATG
385 ACCCACACACGCGTGCCAAC
** * * * ** * *
41982 CGATCGGCAGCATACGGCGACCG-GGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCA
1 CGATC-GC-GCACGCAGAGACCGACGG-CCTCACCACGGATCACTTGGACCGCGAAGGGTCTCCA
42046 TCACCGC
63 TCACCGC
42053 GACAAGGTTT
Statistics
Matches: 424, Mismatches: 41, Indels: 17
0.88 0.09 0.04
Matches are distributed among these distances:
402 80 0.19
403 148 0.35
404 121 0.29
405 23 0.05
406 4 0.01
407 39 0.09
408 9 0.02
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.12
Consensus pattern (404 bp):
CGATCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTCTCCATCA
CCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACC
GAGAGGGACACTGCCGGGGCGCGAACAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAACC
GGCAGGACGAGCCCACCGTTGCCGAAGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGC
CAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGG
AACTTGGCAGAATCACCGCAGGTGCGAGCCTTACCCTACGGCACGACCACGCCCCTGTGACCCAC
ACACGCGTGCCAAC
Found at i:51163 original size:401 final size:403
Alignment explanation
Indices: 49131--51924 Score: 2481
Period size: 401 Copynumber: 6.8 Consensus size: 403
49121 CACTCAGCCC
* * *
49131 GGGCGCGATCCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCACAATCCCCGACAGG-CAACCGGCAGGACGAGCCCA
* * * *
49195 GCGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
* ** * * * *
49260 ACCTGCAGCATCTGCCTGCACCACAACCGGGACCATCC-ACTCGAATTCGAGAACTTGGCAGCAT
129 ACCTGCAGCTTCTGCCCACGCCACAACCGGGA-CAACCTACTCGAATTCGGGAACTTGGCAGAAT
* * ** *
49324 CACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAG
193 CACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAA
* *
49389 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGCCTTCATCA
258 CGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCA
49454 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
323 CCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATC
49519 GAGAGGGACACTGCCG
388 GAGAGGGACACTGCCG
* *
49535 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCACAATCCCCGACAGGCAACCGGCAGGACGAGCCCAC
*
49600 CGTTGCCGATGCAAGGGCCACGAGACTGCCCTTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
* * * * *
49665 CTGCAGCTTCTGCGCGCGCCACAACCGGGAC-CCTCTACTCGATTAGGGGGCTTGGTCCTGGAGT
131 CTGCAGCTTCTGCCCACGCCACAACCGGGACAAC-CTACTCGA--A-------T--T-CGGGA-A
* * ** * * * * *
49729 CGTTGGCGGCATCGGCGCAGGTGCGAG-CTTAACCTTCCGGCAGGACCACGCCTCATCTCCCCAC
182 C-TTGGCAGAATCACCGCAGGTGCGAGCCTT-GCCTTCCGGCACGACCACGCCCCGT-TACCCAC
* * * * * * * *
49793 ACACGCGGGCCAACCGATCGAGCACATGGTGACCGGGGACCTCGCCACGGATCACTTGGACCGCG
244 ACACGCGTGCCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCG
* * **
49858 AAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCAT-GCATG
309 TAGGGTCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGC-TCGCGCG
* ** **
49922 ACCTGGATTTCACA-CGAG-GCAACTGTGGCCG
373 ACCTGGATTTTA-ATCGAGAGGGACACT-GCCG
* * * * ** ** *
49953 GGGCTC-ACACCAAGCCAGGCACATGGTGCA-AGA-CCCTCCCCA--CCCCTCGG-AGGGAAGGG
1 GGGCGCGA-ACCATGCCAGGCGCATGGAGCACA-ATCCC-CGACAGGCAAC-CGGCA-GG-A-CG
* ** * * * * * * *
50012 TGGGCAGGGCG-CGCACCATG-AAGAGCACACG-G-C-GCGCGCC--CT-GATGGGTA-GG--GG
59 AGCCCA--CCGTTGC-CGATGCAAGGGC-CACGAGACTGC-C-CCTGCTCGAGGGGCATGGCCAG
*** * ** ** * ** *** * *
50066 GCCAA-AAAT-A--TGGAATTGTCTG-AAAGTGGGAC-ACTTTTTGACAAGTACC-ATTAGAATA
118 GCCAAGCCCTCACCTGCAGCT-TCTGCCCA-CGCCACAAC--CGGGAC-A--ACCTACTCGAAT-
**** * * * * * * ** **
50124 TATATATATATATATGTA-AATCCAAGGGGCCACAATCGATGGGAGGACCACG-C--AAGGCACC
175 TCGGGA-A-CT-T-GGCAGAAT-C-A----CCGC-A--GGTGCGA-G-CCTTGCCTTCCGGCA-C
**** * * **** *
50185 GGGTGCGCGCCC--TGCCCACACCCG-GATG-GGTGCGGA-CGCGGCACGCAGAATCCCAGGCAC
224 GACCACGC-CCCGTTACCCACACACGCG-TGCCAAAC-GATCGC-GCACGTAG-----C--G-AC
* * * * * * *
50245 CGGGTGCGCGACCTGCCCTTCGCGGAATAAGCCATGAGGGCC-CG-AGGGCCTCGC--CA-CGGA
277 C-GG-G-G-G-CCT-CAC--CACGG-ATCA--C-T-TGGACCGCGTAGGGTCTC-CATCACCGCA
* * *** * * * * *
50305 TCGCTTGG-A-CC-G---CGGAGGGTCCCCGTCACCGC-A-GCTGGGCACGACCTGGATTTCAAT
328 --GCTGGGCATCCGGTCACCGA-AAACCACG--ATCGCAAGGCT-CGCGCGACCTGGATTTTAAT
50362 CGAGAGGGACACTCTGCCG
387 CGAGAGGGACA--CTGCCG
* * * * *
50381 GGGCGCGACCCGTGCGAGGAACAGGAACATCGAGCACAATCCCCGACAGGCAACCGGCAAGACGA
1 GGGCGCGAACCATGCCAGG--C--G--CATGGAGCACAATCCCCGACAGGCAACCGGCAGGACGA
* *
50446 GCCCACCGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAATGGCCAGGCCACG
60 GCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGC-ATGGCCAGGCCAAG
*
50511 CCCTCACCTGCAGCATCTG-CCAGCGCCACAACCGGGACAACCTACTCGAATTCGGGAACTTGGC
124 CCCTCACCTGCAGCTTCTGCCCA-CGCCACAACCGGGACAACCTACTCGAATTCGGGAACTTGGC
50575 AGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTG
188 AGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTG
50640 CCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTC
253 CCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTC
50705 CATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTT
318 CATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTT
50770 TAATCGAGAGGGACACTGCCG
383 TAATCGAGAGGGACACTGCCG
* *
50791 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCACAATCCCCGACAGGCAACCGGCAGGACGAGCCCAC
*
50856 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCCCGAGGGGCATGGCCAGGCCAAGCCCTCAC
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
50921 CTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGGAACTTGGCAGAATCAC
131 CTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGGAACTTGGCAGAATCAC
*
50986 CGCAGGTGCGAGCCTTGCCTTCCGGCA-GACCACG-CCCGTTACCCGCACACGCGTGCCAAACGA
196 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAACGA
51049 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCG
261 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCG
51114 CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
326 CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
51179 AGGGACACTGCCG
391 AGGGACACTGCCG
* *
51192 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGGCAACCGGCAGGACGTGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCACAATCCCCGACAGGCAACCGGCAGGACGAGCCCAC
51257 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
* * * *
51322 CTGCAGCCTCTGCCCACGCCACAACCGGGACTACCGACTCGAATTCGGGAACTTGGCAGCATCAC
131 CTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGGAACTTGGCAGAATCAC
* *
51387 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAACCGA
196 CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAACGA
* * ** * *
51452 TCGCGCACGCAGAGACCGACGGCCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTCACCG
261 TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCG
* * * *
51516 CAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAACCGAG
326 CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
51581 AGGGACACTCTGCCG
391 AGGGACA--CTGCCG
* * * * *
51596 GGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAACCGGCGGGACGAGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCACAATCCCCGACAGGCAACCGGCAGGACGAGCCCAC
* *
51661 CGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGCATGGCCAGGCCAAGCCC-CA
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCATGGCCAGGCCAAGCCCTCA
* *
51724 CCTGCAGCTTCTGCCCACGCCACAACCGGGACTACCAACTCGAATTCGGGAACTTGGCAGAATCA
130 CCTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGGAACTTGGCAGAATCA
* * * * **
51789 GCGCAGGTG-GAAG-CTTAACCCTACGGCACGACCACGCCCCTTGTGCCCCACACACGCGTGCCA
195 CCGCAGGTGCG-AGCCTT-GCCTTCCGGCACGACCACGCCCC--GTTACCCACACACGCGTGCCA
** * * ** * *
51852 TGCGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTC
256 AACGATCGCGCA-CGTA--GCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTC
51916 CATCACCGC
318 CATCACCGC
51925 GACAAGGTTT
Statistics
Matches: 1944, Mismatches: 284, Indels: 320
0.76 0.11 0.13
Matches are distributed among these distances:
401 389 0.20
402 96 0.05
403 334 0.17
404 313 0.16
405 32 0.02
406 5 0.00
407 40 0.02
408 23 0.01
409 3 0.00
410 42 0.02
411 35 0.02
412 39 0.02
413 19 0.01
414 21 0.01
415 5 0.00
416 11 0.01
417 63 0.03
418 175 0.09
419 15 0.01
420 12 0.01
421 11 0.01
422 2 0.00
424 10 0.01
425 14 0.01
426 31 0.02
427 37 0.02
428 30 0.02
429 8 0.00
430 15 0.01
431 13 0.01
432 14 0.01
433 7 0.00
434 19 0.01
435 17 0.01
436 5 0.00
437 3 0.00
438 5 0.00
439 11 0.01
440 2 0.00
441 4 0.00
442 9 0.00
443 5 0.00
ACGTcount: A:0.22, C:0.36, G:0.30, T:0.13
Consensus pattern (403 bp):
GGGCGCGAACCATGCCAGGCGCATGGAGCACAATCCCCGACAGGCAACCGGCAGGACGAGCCCAC
CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCAC
CTGCAGCTTCTGCCCACGCCACAACCGGGACAACCTACTCGAATTCGGGAACTTGGCAGAATCAC
CGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAACGA
TCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCG
CAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGAG
AGGGACACTGCCG
Found at i:58142 original size:79 final size:79
Alignment explanation
Indices: 58031--58237 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 79
58021 GAGATAATAA
* * * * * *
58031 CGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-A
*
58096 -TTAGAAAAAAAAAT
65 TTTAGAAAAAAAAAC
* * *
58110 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
* ** * *
58175 TTTGGGAATAAAGC
66 TTAGAAAAAAAAAC
* *
58189 CGGGGTTGGAGTATCCCCTTGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGAT
58238 GAAATAACAA
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
78 1 0.01
79 106 0.99
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TTAGAAAAAAAAAC
Found at i:58229 original size:28 final size:28
Alignment explanation
Indices: 58189--58260 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
58179 GGAATAAAGC
* *
58189 CGGGGTTGGAGTATCCCC-TTGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAT-GAAATAA
58217 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
**
58245 CAAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
58261 TCGACTGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.33, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:60739 original size:20 final size:20
Alignment explanation
Indices: 60712--60766 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
60702 TAAAATTTCC
*
60712 AAATGTATCGATACAAAGAT
1 AAATGTATCGATACAAAGAA
** *
60732 CCATGTATCGATACACAGAA
1 AAATGTATCGATACAAAGAA
60752 AAATGTATCGATACA
1 AAATGTATCGATACA
60767 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.24
Consensus pattern (20 bp):
AAATGTATCGATACAAAGAA
Found at i:60901 original size:21 final size:21
Alignment explanation
Indices: 60877--60954 Score: 147
Period size: 21 Copynumber: 3.7 Consensus size: 21
60867 CATTTGTAGG
60877 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
60898 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
60919 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
60940 ATGTATCGATACATT
1 ATGTATCGATACATT
60955 TGGATAATTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:60984 original size:13 final size:12
Alignment explanation
Indices: 60962--60994 Score: 57
Period size: 13 Copynumber: 2.7 Consensus size: 12
60952 ATTTGGATAA
60962 TTTTTTTTTATT
1 TTTTTTTTTATT
60974 TTTTTTATTTATT
1 TTTTTT-TTTATT
60987 TTTTTTTT
1 TTTTTTTT
60995 CAAACACTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (12 bp):
TTTTTTTTTATT
Found at i:69995 original size:403 final size:401
Alignment explanation
Indices: 68983--69996 Score: 1228
Period size: 403 Copynumber: 2.5 Consensus size: 401
68973 CAACTGGGCA
* * * *
68983 CGACCTGGATTTTAATCTAGAGGGACACTTTGCCGAGGCACGACCCATGCCAGGCACATCGAGCA
1 CGACCTGGATTTTAATCGAGAGGGACAC--TGCCGGGGCACGAACCATGCCAGGCGCATCGAGCA
*
69048 CAATCCCCGACAGGCAACCGGCAGGACGAGCCCACCGTTGCCGGTGCAAGGGCCGCGAGACTGCC
64 CAATCCCCGACAGGCAACCGGCAGGACGA-CCCACCGTTGCCGATGCAAGGGCCGCGAGACTGCC
* * * *** * **
69113 CCTACTCGAA-TGGCAATGGCCAGGCCACGCCCTCACCTACGGCATCTGCTAGCGCCACAACCGG
128 CCTGCTC-AAGGGGC-ATGGCCAGGCCAAGCCCTCACCTGTAGCTTCTGCCCGCGCCACAACCGG
* * * *
69177 GACTA-TCTACTCAAAATCGAGAACTTGGCAGCATCATCGTAGGTGCGAGCCTTGCCTTCCGACA
191 GAC-ACTCTACTCGAAATCGAGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGACA
* * ** * ** ** * *
69241 TGACCACGCCCCGTTACCCTTACACGGGTGCTAATCGATCGTGCACGCAGTGACCGATGGCCTCA
255 CGACCACGCCCCGTTACCCATACACGCATGCCAAAAGATCACGCACGCAGCGACCGAGGGCCTCA
* * * *
69306 CCACGGATCACTTGGACCGCGTAGGGTCCCGTCACCGTAGCTGGGCATCCAGCCATCGAAAACCA
320 CCACGGATCACTTGGACCGCGTAAGGACCCATCACCATAGCTGGGCATCCAGCCATCGAAAACCA
69371 CGACCGCAAGGCACGCG
385 CGACCGCAAGGCACGCG
* * * * * * *
69388 CAACCTAGATTTTAACCGAGAGGGACACTCTACCGGGGCGCGATCAATGCCAGGCGCATCGAGCA
1 CGACCTGGATTTTAATCGAGAGGGACA--CTGCCGGGGCACGAACCATGCCAGGCGCATCGAGCA
* *
69453 CAATCCCCGACAGGCAACCGGCAAGACGAACCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCC
64 CAATCCCCGACAGGCAACCGGCAGGACG-ACCCACCGTTGCCGATGCAAGGGCCGCGAGACTGCC
* * * * * *
69518 ACTGCTCATGGGGCATGGCCAGGCCAAGCCC-CACCTGTAGCTTCTACCCACGCCATAACTGGGA
128 CCTGCTCAAGGGGCATGGCCAGGCCAAGCCCTCACCTGTAGCTTCTGCCCGCGCCACAACCGGGA
* * *
69582 CTAC-CTACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACG
193 C-ACTCTACTCGAAATCGAGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGACACG
* * * *
69646 ACCACGCCCCGTTACCCATGCATGCATGCCAAAAGATCACGCACGCAGCGATCGGGGGCCTCACC
257 ACCACGCCCCGTTACCCATACACGCATGCCAAAAGATCACGCACGCAGCGACCGAGGGCCTCACC
* * * * *
69711 ACGGATCACTTGGACCGCGTAAGGACTTCATCATCATAGCTGGGCATTCGGTCA-CTGAAAACCA
322 ACGGATCACTTGGACCGCGTAAGGAC-CCATCACCATAGCTGGGCATCCAGCCATC-GAAAACCA
* * *
69775 CGATCGCAAGGCTCGTG
385 CGACCGCAAGGCACGCG
* *
69792 CGACCTGGATTTTAATCGAGAGGGACACTGCCGGGGCACGAACCATGCTAGGCGCATGGAGCACA
1 CGACCTGGATTTTAATCGAGAGGGACACTGCCGGGGCACGAACCATGCCAGGCGCATCGAGCACA
* * * *
69857 ATCCCTGACAGGCAACCGGTAGGACGTACCCACCGTTGTCGATGCAAGGGCCACGAGACTGCCCC
66 ATCCCCGACAGGCAACCGGCAGGACG-ACCCACCGTTGCCGATGCAAGGGCCGCGAGACTGCCCC
* * *
69922 TGCTCAAGGGGCATGGCCAGGCCAAGCCCTCACCTGTAGCTTCTGCGCGCGCCACAACCGAGACC
130 TGCTCAAGGGGCATGGCCAGGCCAAGCCCTCACCTGTAGCTTCTGCCCGCGCCACAACCGGGACA
69987 CTCTACTCGA
195 CTCTACTCGA
69997 TTAAGGGACT
Statistics
Matches: 513, Mismatches: 87, Indels: 20
0.83 0.14 0.03
Matches are distributed among these distances:
402 118 0.23
403 190 0.37
404 83 0.16
405 120 0.23
406 1 0.00
407 1 0.00
ACGTcount: A:0.24, C:0.34, G:0.27, T:0.16
Consensus pattern (401 bp):
CGACCTGGATTTTAATCGAGAGGGACACTGCCGGGGCACGAACCATGCCAGGCGCATCGAGCACA
ATCCCCGACAGGCAACCGGCAGGACGACCCACCGTTGCCGATGCAAGGGCCGCGAGACTGCCCCT
GCTCAAGGGGCATGGCCAGGCCAAGCCCTCACCTGTAGCTTCTGCCCGCGCCACAACCGGGACAC
TCTACTCGAAATCGAGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGACACGACCA
CGCCCCGTTACCCATACACGCATGCCAAAAGATCACGCACGCAGCGACCGAGGGCCTCACCACGG
ATCACTTGGACCGCGTAAGGACCCATCACCATAGCTGGGCATCCAGCCATCGAAAACCACGACCG
CAAGGCACGCG
Found at i:81879 original size:13 final size:13
Alignment explanation
Indices: 81861--81885 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81851 CAAAAAAATA
81861 TGTATCGATACAT
1 TGTATCGATACAT
81874 TGTATCGATACA
1 TGTATCGATACA
81886 AATCGTTGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:93630 original size:63 final size:63
Alignment explanation
Indices: 93543--93766 Score: 220
Period size: 63 Copynumber: 3.6 Consensus size: 63
93533 TTTGTGGGAA
* * * *
93543 GGGGAGGGATGGACGCTGGGGAGGGACTCATTGCACACGCTT-GGCACTCTGCACGTTTGAAGG
1 GGGGAGGGACGGATGCTTGGGAGGGACTCATTGCACACGCTTGGGC-CTCTGCATGTTTGAAGG
* * * * *
93606 GGGGAGGGACGGATGCTTGGGAGGGACTCGTTGCCCACGGTTGGGCCTCTACATGTTTGGAGG
1 GGGGAGGGACGGATGCTTGGGAGGGACTCATTGCACACGCTTGGGCCTCTGCATGTTTGAAGG
* ** * * * * *
93669 GGGAAATGATGGATGCTTGGGAGGGACT-AGCTGCCCACGCTTGGGCCTCAGCATGTTT-AGAGA
1 GGGGAGGGACGGATGCTTGGGAGGGACTCA-TTGCACACGCTTGGGCCTCTGCATGTTTGA-AGG
* * *
93732 GAGGAGGGACAGATGGTTGGGAGGGACTCATTGCA
1 GGGGAGGGACGGATGCTTGGGAGGGACTCATTGCA
93767 GAGGTATGGG
Statistics
Matches: 128, Mismatches: 29, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
63 124 0.97
64 4 0.03
ACGTcount: A:0.20, C:0.18, G:0.42, T:0.21
Consensus pattern (63 bp):
GGGGAGGGACGGATGCTTGGGAGGGACTCATTGCACACGCTTGGGCCTCTGCATGTTTGAAGG
Found at i:99410 original size:28 final size:28
Alignment explanation
Indices: 99325--99979 Score: 587
Period size: 28 Copynumber: 22.5 Consensus size: 28
99315 TCACTAACTT
* *
99325 TTGTGGGCTTTGAAAAGAGTTACCACTGAC
1 TTGTGGGCTTTG-AAAG-GGTGCCACTGAC
* * *
99355 TCATGTGGGCTTTGAAAAGAGTACCACTAAC
1 T--TGTGGGCTTTG-AAAGGGTGCCACTGAC
*
99386 TTATGGGCTTTGAAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGAC
* * *
99414 TTATGGGCTTTGAAAGGATGCCACTAAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGAC
* *
99442 TTGTGGGCTTTGAAAGGATGCCACTAAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGAC
* * **
99470 TTGTAGGCTTTAAAAAGAATGCCACTGAC
1 TTGTGGGCTTT-GAAAGGGTGCCACTGAC
*
99499 TTGTGGGCTTTGTAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGAC
* *
99527 TTGTGGGCTTTGAAAAGAGTTGCCACCGAC
1 TTGTGGGCTTTG-AAAG-GGTGCCACTGAC
* *
99557 TCGTGGGCTTTGAAAGGATGCCACTGAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGAC
* * * *
99585 TTATGGGCTTTCAAAAGAGTTGCCA-TCAAC
1 TTGTGGGCTTT-GAAAG-GGTGCCACT-GAC
* *
99615 TCGTGTGGGCTTTGAGAAGAGTGCCACTGAA
1 T--TGTGGGCTTTGA-AAGGGTGCCACTGAC
99646 TTGTGGGCTTTGAAAGGGTGCCACTGAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGAC
*
99674 TTGTGGGCTTTGAAAGGGTGCCATTGAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGAC
* *
99702 TTGTGGGCTTTGAAAGGATGCCACTAAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGAC
* * * *
99730 TTATGGGCTTTAAAAGGATGCCACTAAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGAC
* * *
99758 TTGTTGGCTTTGAAAAGAGTTGCCACCGAC
1 TTGTGGGCTTTG-AAAG-GGTGCCACTGAC
**
99788 TCATGTGGGCTTTGAAAATAGTGCCACTGAC
1 T--TGTGGGCTTTG-AAAGGGTGCCACTGAC
* *
99819 TTGTGGGCTTTGAAAGGATGCCATTGAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGAC
* *
99847 TTGTGGGCTTTAAAAAGAGTTGCCACT-AGC
1 TTGTGGGCTTT-GAAAG-GGTGCCACTGA-C
* *
99877 TTGT-GGCTTTGAAAAGAGTTGCCACCGAC
1 TTGTGGGCTTTG-AAAG-GGTGCCACTGAC
* * * * *
99906 TCATGTGGGCTTCGAAAAGAGTTACCATTGGC
1 T--TGTGGGCTTTG-AAAG-GGTGCCACTGAC
*
99938 TTGTGGGCTTTGAAAGGGTGCCACTAAC
1 TTGTGGGCTTTGAAAGGGTGCCACTGAC
99966 TTGTGGGCTTTGAA
1 TTGTGGGCTTTGAA
99980 GAGATGAACG
Statistics
Matches: 526, Mismatches: 75, Indels: 50
0.81 0.12 0.08
Matches are distributed among these distances:
28 264 0.50
29 103 0.20
30 64 0.12
31 31 0.06
32 64 0.12
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (28 bp):
TTGTGGGCTTTGAAAGGGTGCCACTGAC
Found at i:99813 original size:173 final size:172
Alignment explanation
Indices: 99325--99890 Score: 669
Period size: 173 Copynumber: 3.2 Consensus size: 172
99315 TCACTAACTT
* * * *
99325 TTGTGGGCTTTGAAAAGAGTTACCACTGACTCATGTGGGCTTTGAAAAGAGTACCACTAACTTAT
1 TTGTGGGCTTTG-AAAG-GGTGCCACTGACT--TGTGGGCTTTGAAAGGA-TGCCACTAACTTAT
* * *
99390 GGGCTTTGAAAGGGTGCCACTGACTTATGGGCTTTG-AAAG-GATGCCACTAACT-TGTGGGCTT
61 GGGCTTTGAAAGGATGCCACTGACTTATGGGCTTTGAAAAGAGTTGCCACCAACTCTGTGGGCTT
* * * *
99452 TGAAAGGA-TGCCACT-AACTTGTAGGCTTTAAAAAGAATGCCACTGAC
126 TGAAAAGAGTGCCACTGAA-TTGTGGGCTTT-GAAAGGATGCCACTGAC
* * ** **
99499 TTGTGGGCTTTGTAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTGGG
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG-AAAG-GATGCCACTAACTTATGGG
* *
99564 CTTTGAAAGGATGCCACTGACTTATGGGCTTTCAAAAGAGTTGCCATCAACTCGTGTGGGCTTTG
64 CTTTGAAAGGATGCCACTGACTTATGGGCTTTGAAAAGAGTTGCCACCAACTC-TGTGGGCTTTG
* *
99629 AGAAGAGTGCCACTGAATTGTGGGCTTTGAAAGGGTGCCACTGAC
128 AAAAGAGTGCCACTGAATTGTGGGCTTTGAAAGGATGCCACTGAC
*
99674 TTGTGGGCTTTGAAAGGGTGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCT
1 TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCT
* * * * *
99739 TTAAAAGGATGCCACTAACTTGTTGGCTTTGAAAAGAGTTGCCACCGACTCATGTGGGCTTTGAA
66 TTGAAAGGATGCCACTGACTTATGGGCTTTGAAAAGAGTTGCCACCAACTC-TGTGGGCTTTGAA
* * *
99804 AATAGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCATTGAC
130 AAGAGTGCCACTGAATTGTGGGCTTTGAAAGGATGCCACTGAC
* *
99847 TTGTGGGCTTTAAAAAGAGTTGCCACT-AGCTTGT-GGCTTTGAAA
1 TTGTGGGCTTT-GAAAG-GGTGCCACTGA-CTTGTGGGCTTTGAAA
99891 AGAGTTGCCA
Statistics
Matches: 337, Mismatches: 44, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
170 11 0.03
171 46 0.14
172 16 0.05
173 135 0.40
174 31 0.09
175 79 0.23
176 17 0.05
177 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (172 bp):
TTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCT
TTGAAAGGATGCCACTGACTTATGGGCTTTGAAAAGAGTTGCCACCAACTCTGTGGGCTTTGAAA
AGAGTGCCACTGAATTGTGGGCTTTGAAAGGATGCCACTGAC
Found at i:99960 original size:89 final size:85
Alignment explanation
Indices: 99358--99979 Score: 628
Period size: 89 Copynumber: 7.2 Consensus size: 85
99348 CACTGACTCA
* * * * *
99358 TGTGGGCTTTGAAAAGAGTACCACTAACTTATGGGCTTTGAAAGGGTGCCACTGACTTATGGGCT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* *
99423 TTGAAAGGATGCCACTAACT
66 TTGAAAGGGTGCCACTAGCT
* * * * *
99443 TGTGGGCTTTGAAAGGA-TGCCACTAACTTGTAGGCTTTAAAAAGAATGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGC
*
99507 TTTGTAAGGGTGCCACT-GACT
65 TTTGAAAGGGTGCCACTAG-CT
* * *
99528 TGTGGGCTTTGAAAAGAGTTGCCACCGACTCGTGGGCTTTGAAAGGATGCCACTGACTTATGGGC
1 TGTGGGCTTTGAAAAGAG-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC
* * *
99593 TTTCAAAAGAGTTGCCA-TCAACT
65 TTT-GAAAG-GGTGCCACT-AGCT
* * *
99616 CGTGTGGGCTTTGAGAAGAGTGCCACTGAATTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG
1 --TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
*
99681 CTTTGAAAGGGTGCCA-TTGACT
64 CTTTGAAAGGGTGCCACTAG-CT
* * * * * *
99703 TGTGGGCTTTGAAAGGA-TGCCACTAACTTATGGGCTTTAAAAGGATGCCACTAACTTGTTGGCT
1 TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
* *
99767 TTGAAAAGAGTTGCCAC-CGACT
66 TTG-AAAG-GGTGCCACTAG-CT
* *
99789 CATGTGGGCTTTGAAAATAGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCATTGACTTGTGGG
1 --TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG
* *
99854 CTTTAAAAAGAGTTGCCACTAGCT
64 CTTT-GAAAG-GGTGCCACTAGCT
* * * * * *
99878 TGT-GGCTTTGAAAAGAGTTGCCACCGACTCATGTGGGCTTCGAAAAGAGTTACCATTGGCTTGT
1 TGTGGGCTTTGAAAAGAG-TGCCACTGACT--TGTGGGCTTTG-AAAG-GATGCCACTGACTTGT
*
99942 GGGCTTTGAAAGGGTGCCACTAACT
61 GGGCTTTGAAAGGGTGCCACTAGCT
99967 TGTGGGCTTTGAA
1 TGTGGGCTTTGAA
99980 GAGATGAACG
Statistics
Matches: 449, Mismatches: 63, Indels: 45
0.81 0.11 0.08
Matches are distributed among these distances:
84 61 0.14
85 89 0.20
86 48 0.11
87 43 0.10
88 27 0.06
89 126 0.28
90 35 0.08
91 20 0.04
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (85 bp):
TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCT
TTGAAAGGGTGCCACTAGCT
Found at i:101195 original size:1 final size:1
Alignment explanation
Indices: 101184--101272 Score: 52
Period size: 1 Copynumber: 89.0 Consensus size: 1
101174 TCTCGACCCA
* * ** * * * *** *
101184 TTTTTTGTTTTTTTGTTTTTTTTGGTTTTTTTTCTTATTTTGTTTTTTTTGGGTTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** *
101249 TTGGTTTTTTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTT
101273 GCACGAAGGA
Statistics
Matches: 68, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 68 1.00
ACGTcount: A:0.01, C:0.01, G:0.13, T:0.84
Consensus pattern (1 bp):
T
Found at i:101203 original size:9 final size:9
Alignment explanation
Indices: 101184--101270 Score: 97
Period size: 9 Copynumber: 9.7 Consensus size: 9
101174 TCTCGACCCA
101184 TTTTTTG-T
1 TTTTTTGTT
101192 TTTTTTGTT
1 TTTTTTGTT
101201 TTTTTTGGTT
1 TTTTTT-GTT
*
101211 TTTTTT-CT
1 TTTTTTGTT
*
101219 TATTTTGTT
1 TTTTTTGTT
**
101228 TTTTTTGGG
1 TTTTTTGTT
101237 TTTTTTGTT
1 TTTTTTGTT
*
101246 TTTTTGGTTT
1 TTTTTTG-TT
101256 TTTTTTGTT
1 TTTTTTGTT
101265 TTTTTT
1 TTTTTT
101271 TTGCACGAAG
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
8 13 0.20
9 35 0.54
10 17 0.26
ACGTcount: A:0.01, C:0.01, G:0.14, T:0.84
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:101224 original size:27 final size:25
Alignment explanation
Indices: 101184--101272 Score: 115
Period size: 27 Copynumber: 3.4 Consensus size: 25
101174 TCTCGACCCA
*
101184 TTTTTTGTTTTTTTGTTTTTTTTGG
1 TTTTTTTTTTTTTTGTTTTTTTTGG
101209 TTTTTTTTCTTATTTTGTTTTTTTTGGG
1 TTTTTTTT-TT-TTTTGTTTTTTTT-GG
* *
101237 TTTTTTGTTTTTTTGGTTTTTTTTTG
1 TTTTTT-TTTTTTTTGTTTTTTTTGG
101263 TTTTTTTTTT
1 TTTTTTTTTT
101273 GCACGAAGGA
Statistics
Matches: 57, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
25 11 0.19
26 9 0.16
27 25 0.44
28 10 0.18
29 2 0.04
ACGTcount: A:0.01, C:0.01, G:0.13, T:0.84
Consensus pattern (25 bp):
TTTTTTTTTTTTTTGTTTTTTTTGG
Found at i:110386 original size:52 final size:52
Alignment explanation
Indices: 110308--110436 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
110298 CGAAATATGA
* * *
110308 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCAATACATCTAGGC
* * *
110360 AAATTTGCCTCCATGTATCGATACATTTTATAATGTATCAATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCAATACATCTAGGC
110412 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
110437 AAGATCAATG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCAATACATCTAGGC
Found at i:110447 original size:52 final size:51
Alignment explanation
Indices: 110308--110457 Score: 194
Period size: 52 Copynumber: 2.9 Consensus size: 51
110298 CGAAATATGA
* *
110308 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAATGTATCGATACATCTAGGC
* * * *
110360 AAATTTGCCTCCATGTATCGATACATTTTATAATGTATCAATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAATGTATCGATACATCTAGGC
*
110412 AAATTTGCCTGCATGTATCGATACA-AAGATCAATGTATCGATACAT
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AATGTATCGATACAT
110458 TTGAGTTATG
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 2 0.02
52 84 0.98
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAATGTATCGATACATCTAGGC
Found at i:110537 original size:13 final size:13
Alignment explanation
Indices: 110519--110543 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
110509 CAAAAAAATA
110519 TGTATCGATACAT
1 TGTATCGATACAT
110532 TGTATCGATACA
1 TGTATCGATACA
110544 AATCATTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:111416 original size:67 final size:68
Alignment explanation
Indices: 111294--111420 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
111284 ATTGGGTTTT
* * *
111294 AAAGATGATGAAGGTGCCAATATGATGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
111359 AGA
66 AGA
* * ** *
111362 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAATGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAGATGA
111421 GAAAAAGGAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGATGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:111517 original size:49 final size:47
Alignment explanation
Indices: 111424--111894 Score: 399
Period size: 49 Copynumber: 10.0 Consensus size: 47
111414 AAGATGAGAA
* * * * *
111424 AAAGGATGTCAATGTGCTGATTCAAGGCTAGCTACATTGAACTTAAAGAT
1 AAAGG-TGCCAATATGCTGATT--AGGCCAGCTATATTGGACTTAAAGAT
111474 GGAAAAGGTGCCAATATGCTGATT-GGCCAGCTATATTGGAC-T-----T
1 ---AAAGGTGCCAATATGCTGATTAGGCCAGCTATATTGGACTTAAAGAT
* * * *
111517 AAAGGTGCCAATGTGCTGACTCAAAGCCAGCTACATTGGACTTAAAGA-
1 AAAGGTGCCAATATGCTGA-T-TAGGCCAGCTATATTGGACTTAAAGAT
111565 AGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
1 A-AAGGTGCCAATATGCTGATT--AGGCCAGCTATATTGGACTTAAAGAT
* * *
111609 AAAGGTGCCAATATGCCGATTCAAGGCCAGCTACATCGGACTTAAAGA-
1 AAAGGTGCCAATATGCTGATT--AGGCCAGCTATATTGGACTTAAAGAT
*
111657 AGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
1 A-AAGGTGCCAATATGCTGATT--AGGCCAGCTATATTGGACTTAAAGAT
* *
111707 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT
1 AAAGGTGCCAATATGCTGATT--AGGCCAGCTATATTGGACTTAAAGAT
*
111756 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
1 AAAGGTGCCAATATGCTGATT--AGGCCAGCTATATTGGACTTAAAGAT
* *
111799 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATATGCTGATT--AGGCCAGCTATATTGGACTTAAAGAT
* *
111848 GAAGATGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 AAAGGTGCCAATATGCTGATT--AGGCCAGCTATATTGGACTTAAAG
111895 GAAGATGCCA
Statistics
Matches: 363, Mismatches: 28, Indels: 58
0.81 0.06 0.13
Matches are distributed among these distances:
40 18 0.05
41 1 0.00
43 92 0.25
44 4 0.01
48 6 0.02
49 223 0.61
52 14 0.04
53 5 0.01
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (47 bp):
AAAGGTGCCAATATGCTGATTAGGCCAGCTATATTGGACTTAAAGAT
Found at i:111552 original size:92 final size:91
Alignment explanation
Indices: 111424--111895 Score: 630
Period size: 92 Copynumber: 5.1 Consensus size: 91
111414 AAGATGAGAA
* * *
111424 AAAGGATGTCAATGTGCTGATTCAAGGCTAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAAT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-AAAGGTGCCAAT
111489 ATGCTGATT-GGCCAGCTATATTGGACTT
63 ATGCTGATTAGGCCAGCTATATTGGACTT
* * *
111517 AAAGGTGCCAATGTGCTGACTCAAAGCCAGCTACATTGGACTTAAAGAAG-AAGGTGCCAATATG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGGTGCCAATATG
111581 CTGATTCAAGGCCAGCTATATTGGACTT
66 CTGATT--AGGCCAGCTATATTGGACTT
* * * *
111609 AAAGGTGCCAATATGCCGATTCAAGGCCAGCTACATCGGACTTAAAGAAG-AAGGTGCCAATATG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGGTGCCAATATG
111673 CTGATTCAAGGCCAGCTATATTGGACTT
66 CTGATT--AGGCCAGCTATATTGGACTT
* * *
111701 AAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AAGGTGCC
1 --A----AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGGTGCC
111765 AATATGCTGATTCAAGGCCAGCTATATTGGACTT
60 AATATGCTGATT--AGGCCAGCTATATTGGACTT
*
111799 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-AAGATGCCAATATG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGGTGCCAATATG
111863 CTGATTCAAGGCCAGCTATATTGGACTT
66 CTGATT--AGGCCAGCTATATTGGACTT
111891 AAAGG
1 AAAGG
111896 AAGATGCCAC
Statistics
Matches: 350, Mismatches: 20, Indels: 19
0.90 0.05 0.05
Matches are distributed among these distances:
89 20 0.06
91 1 0.00
92 236 0.67
93 5 0.01
94 1 0.00
96 1 0.00
98 86 0.25
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (91 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGGTGCCAATATG
CTGATTAGGCCAGCTATATTGGACTT
Found at i:111665 original size:141 final size:135
Alignment explanation
Indices: 111477--111895 Score: 592
Period size: 141 Copynumber: 3.0 Consensus size: 135
111467 TAAAGATGGA
* * * *
111477 AAAGGTGCCAATATGCTGATT---GGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGACTC
1 AAAGGTGCCAATATGCCGATTCAAGGCCAGCTACATCGGACTTAAAGGTGCCAATGTGCTGATTC
* *
111539 AAAGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
66 AAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
111604 GACTT
131 GACTT
*
111609 AAAGGTGCCAATATGCCGATTCAAGGCCAGCTACATCGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATATGCCGATTCAAGGCCAGCTACATCGGACTT-----A-AAGGTGCCAATGTGC
* *
111674 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAGCT
60 TGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCT
111739 ATATTGGACTT
125 ATATTGGACTT
* * *
111750 AAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGC
1 --A----AAGGTGCCAATATGCCGATTCAAGGCCAGCTACATCGGACTTAAAGGTGCCAATGTGC
*
111815 TGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCT
60 TGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCT
111880 ATATTGGACTT
125 ATATTGGACTT
111891 AAAGG
1 AAAGG
111896 AAGATGCCAC
Statistics
Matches: 256, Mismatches: 16, Indels: 27
0.86 0.05 0.09
Matches are distributed among these distances:
132 20 0.08
135 21 0.08
139 1 0.00
140 1 0.00
141 172 0.67
142 1 0.00
143 1 0.00
147 39 0.15
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (135 bp):
AAAGGTGCCAATATGCCGATTCAAGGCCAGCTACATCGGACTTAAAGGTGCCAATGTGCTGATTC
AAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
GACTT
Found at i:111971 original size:32 final size:32
Alignment explanation
Indices: 111900--112023 Score: 187
Period size: 32 Copynumber: 3.9 Consensus size: 32
111890 TAAAGGAAGA
* *
111900 TGCCACCAACTTGTGTGGGCTTTTGAAGAAGGT
1 TGCCACCAACTTGTGTGGGCTTTAG-AGAGGGT
* *
111933 TGCCACCGACTTGTGTGGGCTTTAGAGGGGGT
1 TGCCACCAACTTGTGTGGGCTTTAGAGAGGGT
111965 TGCCACCAACTTGTGTGGGCTTTAGAGAGGGT
1 TGCCACCAACTTGTGTGGGCTTTAGAGAGGGT
*
111997 TGCCACCGACTTGTGTGGGCTTT-GAGA
1 TGCCACCAACTTGTGTGGGCTTTAGAGA
112024 AGAAGGTGCC
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
31 4 0.05
32 57 0.68
33 23 0.27
ACGTcount: A:0.17, C:0.19, G:0.35, T:0.29
Consensus pattern (32 bp):
TGCCACCAACTTGTGTGGGCTTTAGAGAGGGT
Found at i:112034 original size:65 final size:64
Alignment explanation
Indices: 111895--112035 Score: 203
Period size: 65 Copynumber: 2.2 Consensus size: 64
111885 GGACTTAAAG
* *
111895 GAAGATGCCACCAACTTGTGTGGGCTTTTGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGA
1 GAAGGTGCCACCAACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGA
** *
111959 GGGGGTTGCCACCAACTTGTGTGGGCTTTAG-AGAGGGTTGCCACCGACTTGTGTGGGCTTTGAG
1 GAAGG-TGCCACCAACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTT-AG
112023 AA
64 -A
112025 GAAGGTGCCAC
1 GAAGGTGCCAC
112036 TAAGTCGTGG
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
64 31 0.46
65 32 0.48
66 4 0.06
ACGTcount: A:0.20, C:0.19, G:0.35, T:0.26
Consensus pattern (64 bp):
GAAGGTGCCACCAACTTGTGTGGGCTTTAGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTAGA
Found at i:112549 original size:100 final size:100
Alignment explanation
Indices: 112010--112521 Score: 934
Period size: 100 Copynumber: 5.1 Consensus size: 100
112000 CACCGACTTG
* * **
112010 TGTGGGCTTTGAGAAGAAGGTGCCACTAAGTCGTGGACTTAAAAGGAACAAGGTGCCACAGAGTT
1 TGTGGGCTTTGAAAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACAGAGTT
112075 GTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
66 GTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
112110 TGTGGGCTTTGAAAAAAAGGTGCCACAGAGTCGTGGACTTAAAAGGAACAAGGTGCCACAGAGTT
1 TGTGGGCTTTGAAAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACAGAGTT
112175 GTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
66 GTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
112210 TGTGGGCTTTGAAAAAAAGGTGCCAGGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACAGAGTT
1 TGTGGGCTTTGAAAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACAGAGTT
*
112275 GTGGACTTTAAAAGGGAAAAAGACTGCCACGGAGT
66 GTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
112310 TGTGGGCTTTGAAAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAATAAGGTGCGACAGAGTT
1 TGTGGGCTTTGAAAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACAGAGTT
112375 GTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
66 GTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
112410 TGTGGGCTTTGAAAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACAGAGTT
1 TGTGGGCTTTGAAAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACAGAGTT
*
112475 ATGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
66 GTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
112510 TGTGGGCTTTGA
1 TGTGGGCTTTGA
112522 GTAGAGATTA
Statistics
Matches: 398, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 398 1.00
ACGTcount: A:0.34, C:0.13, G:0.33, T:0.20
Consensus pattern (100 bp):
TGTGGGCTTTGAAAAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACAGAGTT
GTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
Found at i:112630 original size:31 final size:31
Alignment explanation
Indices: 112499--112649 Score: 164
Period size: 31 Copynumber: 4.9 Consensus size: 31
112489 GGAAAAAGAG
* * * *
112499 TGCCACGGAGTTGTGGGCTTTGAGTAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
* *
112530 TACCACTGAGTCGTGGACTTTGAAGAAAAGGA-
1 TGCCACTGAGTCGTGGACTTTG-AGAAGA-GAT
*
112562 TGCCACTGAGTCGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTTGAGA-AGAGAT
*
112592 TGCCACTGAGTCGTGGGCTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
* *
112623 TGCCACTGAGTCATGGACTTTAAGAAG
1 TGCCACTGAGTCGTGGACTTTGAGAAG
112650 GTATTTGAAG
Statistics
Matches: 102, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
29 2 0.02
30 25 0.25
31 47 0.46
32 26 0.25
33 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:112779 original size:16 final size:17
Alignment explanation
Indices: 112748--112785 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
112738 GATGCAAATA
* *
112748 ATGATGTTATTGATGTT
1 ATGATGTCATTGATGTC
112765 ATGATGTCA-TGATGTC
1 ATGATGTCATTGATGTC
112781 ATGAT
1 ATGAT
112786 TACAGCACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (17 bp):
ATGATGTCATTGATGTC
Found at i:120735 original size:52 final size:52
Alignment explanation
Indices: 120657--120785 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
120647 CGAAATATGA
* * *
120657 AAATTTACTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACATTTAATAATGTATCAATACATCTGGGC
* *
120709 AAATTTTCCTGCATGTATCGATACATTTTATAATGTATCAATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACATTTAATAATGTATCAATACATCTGGGC
*
120761 AAATTTGCCTGCATGTATCGATACA
1 AAATTTACCTGCATGTATCGATACA
120786 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (52 bp):
AAATTTACCTGCATGTATCGATACATTTAATAATGTATCAATACATCTGGGC
Found at i:120798 original size:52 final size:51
Alignment explanation
Indices: 120657--120805 Score: 192
Period size: 52 Copynumber: 2.9 Consensus size: 51
120647 CGAAATATGA
*
120657 AAATTTACTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
* * * *
120709 AAATTTTCCTGCATGTATCGATACATTTTATAATGTATCAATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
* *
120761 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTACCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
120806 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (51 bp):
AAATTTACCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGC
Found at i:120812 original size:13 final size:13
Alignment explanation
Indices: 120794--120818 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
120784 CAAAGATCAG
120794 TGTATCGATACAA
1 TGTATCGATACAA
120807 TGTATCGATACA
1 TGTATCGATACA
120819 TTTGAGTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:120886 original size:20 final size:20
Alignment explanation
Indices: 120857--120947 Score: 90
Period size: 20 Copynumber: 5.0 Consensus size: 20
120847 GCAGTAGCTT
120857 AAAT-TGTATCGATACAAAA
1 AAATATGTATCGATACAAAA
120876 AAATATGTATCGATAC----
1 AAATATGTATCGATACAAAA
120892 --AT-TGTATCGATACAAAA
1 AAATATGTATCGATACAAAA
*
120909 AAATATGTATCGATACAACA
1 AAATATGTATCGATACAAAA
***
120929 CTTTATGTATCGATACAAA
1 AAATATGTATCGATACAAA
120948 TCGTTGAAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
13 11 0.19
14 2 0.03
19 6 0.10
20 40 0.68
ACGTcount: A:0.46, C:0.13, G:0.11, T:0.30
Consensus pattern (20 bp):
AAATATGTATCGATACAAAA
Found at i:120896 original size:33 final size:33
Alignment explanation
Indices: 120859--120925 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
120849 AGTAGCTTAA
120859 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
120892 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
120925 A
1 A
120926 ACACTTTATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.30
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:120899 original size:13 final size:13
Alignment explanation
Indices: 120881--120905 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
120871 CAAAAAAATA
120881 TGTATCGATACAT
1 TGTATCGATACAT
120894 TGTATCGATACA
1 TGTATCGATACA
120906 AAAAAATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:121436 original size:49 final size:49
Alignment explanation
Indices: 121375--122078 Score: 518
Period size: 49 Copynumber: 14.9 Consensus size: 49
121365 ATGTTAAAGA
* * * *
121375 TGCCAATATGCTGATTCAAGGCCAACGATATCGGACTTAACGATGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
121424 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * *
121473 TGCCAATATGTTGATTCAAGGCCAGCGATATTAGAC-TAGCAGATGAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA-AAGATGAAGG
** * * * *
121522 TGCCAATGCGCTAATTCAAGGCCGGTGACATTGGACTTAAAGATGGTTAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G--AAGG
* * * * ** *
121574 TGCCAATGTGCTGATTTAAGGCCAACGACAACGGTCTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* *
121623 TGCCAATATGTTGATTCAAGGCCAGCGATATTGGGC-T-----T----G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * *
121662 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA-CAA-G
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * *
121709 TGCCGATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGGTAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G--AAGG
121761 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * * *
121804 TGTCAATATGCTGGTTCAAGGTCAGCGACATTGGTCTTAAAGA-CAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* ** *
121852 TGCCAATATACTGATTCAAGGCCAATGATATTGGGC-T-----T--A--
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * * *
121891 TGCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGA-CAGGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
* * * ** * *
121939 TGCCAATATGCTGATTCAGGGCTAGTGATAACGGACTTAAAGATAAAGA
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
** * * * * *
121988 TGCCAATGCGTTGACTCAAGGCTAGCGACATTGGTCTTAAAGAT-AATGG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAA-GG
* *
122037 TGCCAACATGGTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
122079 GTGTCACAGA
Statistics
Matches: 514, Mismatches: 104, Indels: 74
0.74 0.15 0.11
Matches are distributed among these distances:
39 64 0.12
40 2 0.00
41 1 0.00
43 38 0.07
47 40 0.08
48 74 0.14
49 214 0.42
50 3 0.01
51 3 0.01
52 75 0.15
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGG
Found at i:121539 original size:98 final size:98
Alignment explanation
Indices: 121375--122078 Score: 590
Period size: 98 Copynumber: 7.4 Consensus size: 98
121365 ATGTTAAAGA
* * *
121375 TGCCAATATGCTGATTCAAGGCCAACGATATCGGACTTAACGATGAAGATGCCAATGTGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATATGCTGATT
*
121440 CAAGGCCAGCGACATTGGTCTTAAAGATGACGG
66 CAAGGCCAGCGACATTGGTCTTAAAGATGAAGG
* * * * ** *
121473 TGCCAATATGTTGATTCAAGGCCAGCGATATTAGAC-TAGCAGATGAAGATGCCAATGCGCTAAT
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTA-AAGATGAAGATGCCAATATGCTGAT
* * *
121537 TCAAGGCCGGTGACATTGGACTTAAAGATGGTTAAGG
65 TCAAGGCCAGCGACATTGGTCTTAAAGAT-G--AAGG
* * * ** * * *
121574 TGCCAATGTGCTGATTTAAGGCCAACGACAACGGTCTTAAAGATGAAGGTGCCAATATGTTGATT
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATATGCTGATT
* *
121639 CAAGGCCAGCGATATTGGGC-T-----T----G
66 CAAGGCCAGCGACATTGGTCTTAAAGATGAAGG
* * * * *
121662 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA-CAAG-TGCCGATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATATGCTGATT
* * *
121725 CAAGGCCAGCGATATTGGGCTTAAAGGTGGTAAAGG
66 CAAGGCCAGCGACATTGGTCTTAAAGAT-G--AAGG
* * *
121761 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G--G-TGTCAATATGCTGGTT
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATATGCTGATT
* *
121820 CAAGGTCAGCGACATTGGTCTTAAAGA-CAAGG
66 CAAGGCCAGCGACATTGGTCTTAAAGATGAAGG
* * *
121852 TGCCAATATACTGATTCAAGGCCAATGATATTGGGC-T-----T----ATGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATATGCTGATT
* * *
121907 CAAGGCCAGTGACATTGGTCTTAAAGA-CAGGG
66 CAAGGCCAGCGACATTGGTCTTAAAGATGAAGG
* * ** ** * ** * *
121939 TGCCAATATGCTGATTCAGGGCTAGTGATAACGGACTTAAAGATAAAGATGCCAATGCGTTGACT
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATATGCTGATT
*
122004 CAAGGCTAGCGACATTGGTCTTAAAGAT-AATGG
66 CAAGGCCAGCGACATTGGTCTTAAAGATGAA-GG
* * *
122037 TGCCAACATGGTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAG
122079 GTGTCACAGA
Statistics
Matches: 494, Mismatches: 80, Indels: 64
0.77 0.13 0.10
Matches are distributed among these distances:
86 34 0.07
87 76 0.15
88 42 0.09
90 1 0.00
91 36 0.07
92 1 0.00
93 1 0.00
95 38 0.08
97 42 0.09
98 118 0.24
99 36 0.07
100 1 0.00
101 66 0.13
102 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.25
Consensus pattern (98 bp):
TGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATGCCAATATGCTGATT
CAAGGCCAGCGACATTGGTCTTAAAGATGAAGG
Found at i:121677 original size:39 final size:40
Alignment explanation
Indices: 121622--121929 Score: 170
Period size: 39 Copynumber: 7.0 Consensus size: 40
121612 AAAGATGAAG
*
121622 GTGCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTT-
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
* * * *
121661 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT-------A
*
121708 GTGCCGATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGGTAAA
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-------T--T--A
*
121759 GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
1 -GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT--A
* * * * *
121802 GGTGTCAATATGCTGGTTCAAGGTCAGCGACATTGGTCTTAAAGACAA
1 -GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT-------A
* **
121850 GGTGCCAATATACTGATTCAAGGCCAATGATATTGGGCTTA
1 -GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
* * *
121891 -TGCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTA
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
121930 AAGACAGGGT
Statistics
Matches: 215, Mismatches: 31, Indels: 46
0.74 0.11 0.16
Matches are distributed among these distances:
39 69 0.32
41 1 0.00
43 39 0.18
45 1 0.00
47 32 0.15
48 34 0.16
51 2 0.01
52 35 0.16
54 1 0.00
56 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (40 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
Found at i:121871 original size:48 final size:47
Alignment explanation
Indices: 121661--122078 Score: 340
Period size: 48 Copynumber: 8.9 Consensus size: 47
121651 TATTGGGCTT
* * *
121661 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAA-
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-AAG
* *
121708 GTGCCGATATGCTGATTCAAGGCCAGCGATATTGGGCTTAAAGGTGGTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAA----G-AAAG
*
121760 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----AAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAAAG
* * * *
121803 GTGTCAATATGCTGGTTCAAGGTCAGCGACATTGGTCTTAAAGACAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-AAG
* ** *
121851 GTGCCAATATACTGATTCAAGGCCAATGATATTGGGCTT------A-
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAAAG
* * *
121891 -TGCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGACAGG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-AAG
* * * ** *
121938 GTGCCAATATGCTGATTCAGGGCTAGTGATAACGGACTTAAAGATAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAG--AAAG
* ** * * * *
121987 ATGCCAATGCGTTGACTCAAGGCTAGCGACATTGGTCTTAAAGATAATG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGA-AA-G
* * *
122036 GTGCCAACATGGTGATTCAAGGCCAGCGATATTGGACTTAAAG
1 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAG
122079 GTGTCACAGA
Statistics
Matches: 295, Mismatches: 52, Indels: 46
0.75 0.13 0.12
Matches are distributed among these distances:
39 34 0.12
41 1 0.00
43 38 0.13
47 39 0.13
48 72 0.24
49 69 0.23
50 1 0.00
51 3 0.01
52 38 0.13
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (47 bp):
GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGTCTTAAAGAAAG
Found at i:121897 original size:229 final size:234
Alignment explanation
Indices: 121423--122031 Score: 662
Period size: 229 Copynumber: 2.6 Consensus size: 234
121413 AACGATGAAG
* *
121423 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGTTGAT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CACGGTGCCAATATGCTGAT
* * * *
121488 TCAAGGCCAGCGATATTAGACTAGCAGATGAAGATGCCAATGCGCTAATTCAAGGCCGGTGACAT
65 TCAAGGCCAGCGATATTAGACTAGAAGATGAAGATGCCAATACGCTAATTCAAGGCCAGCGACAT
* *
121553 TGGACTTAAAGATGGTTAAGGTGCCAATGTGCTGATTTAAGGCCAACGACAACGGTCTTAAAGAT
130 TGGACTTAAAGATGGTT-A-GT-CCAATATGCTGATTCAAGGCCAACGACAACGGTCTTAAAGAT
* ** *
121618 GAAGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTT
192 CAAGGTGCCAATATACTGATTCAAGGCCAACGATATTGGGCTT
* * * *
121661 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACA-AGTGCCGATATGCTGATT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACACGGTGCCAATATGCTGATT
* * * * * *
121725 CAAGGCCAGCGATATTGGGCTTA-AAGGTGGTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGA
66 CAAGGCCAGCGATATTAGAC-TAGAAGAT-G--AAGATGCCAATACGCTAATTCAAGGCCAGCGA
* * * * **
121789 TATTGGACTT-AA-A-GG-T-GT-CAATATGCTGGTTCAAGGTCAGCGACATTGGTCTTAAAGA-
127 CATTGGACTTAAAGATGGTTAGTCCAATATGCTGATTCAAGGCCAACGACAACGGTCTTAAAGAT
*
121847 CAAGGTGCCAATATACTGATTCAAGGCCAATGATATTGGGCTT
192 CAAGGTGCCAATATACTGATTCAAGGCCAACGATATTGGGCTT
* * *
121890 ATGCCAATATGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGACAGGGTGCCAATATGCTGATT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACACGGTGCCAATATGCTGATT
* * * *** * * * * * *
121955 CAGGGCTAGTGATAACGGACTTA-AAGATAAAGATGCCAATGCGTTGACTCAAGGCTAGCGACAT
66 CAAGGCCAGCGATATTAGAC-TAGAAGATGAAGATGCCAATACGCTAATTCAAGGCCAGCGACAT
*
122019 TGGTCTTAAAGAT
130 TGGACTTAAAGAT
122032 AATGGTGCCA
Statistics
Matches: 312, Mismatches: 51, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
227 34 0.11
228 2 0.01
229 81 0.26
230 70 0.22
232 2 0.01
235 1 0.00
236 38 0.12
237 5 0.02
238 44 0.14
239 35 0.11
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (234 bp):
ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACACGGTGCCAATATGCTGATT
CAAGGCCAGCGATATTAGACTAGAAGATGAAGATGCCAATACGCTAATTCAAGGCCAGCGACATT
GGACTTAAAGATGGTTAGTCCAATATGCTGATTCAAGGCCAACGACAACGGTCTTAAAGATCAAG
GTGCCAATATACTGATTCAAGGCCAACGATATTGGGCTT
Found at i:121934 original size:87 final size:89
Alignment explanation
Indices: 121661--122076 Score: 343
Period size: 87 Copynumber: 4.5 Consensus size: 89
121651 TATTGGGCTT
* * * *
121661 GTGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGACAAGTGCCGATATGCTGATTC
1 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT------AAGTGCCAATATGCTGATTC
* *
121726 AAGGCCAGCGATATTGGGCTTAAAGGTGGTA-AAG
60 AAGGCCAGCGACATTGGTCTTAAA----G-ACAAG
* * *
121760 GTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGTCAATATGCTGGTTCAAGG
1 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTT-AA-GTGCCAATATGCTGATTCAAGG
*
121825 TCAGCGACATTGGTCTTAAAGACAAG
64 CCAGCGACATTGGTCTTAAAGACAAG
* * *
121851 GTGCCAATATACTGATTCAAGGCCAATGATATTGGGCTT-A-TGCCAATATGCTGATTCAAGGCC
1 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAGTGCCAATATGCTGATTCAAGGCC
* *
121914 AGTGACATTGGTCTTAAAGACAGG
66 AGCGACATTGGTCTTAAAGACAAG
* * ** ** ** * *
121938 GTGCCAATATGCTGATTCAGGGCTAGTGATAACGGACTTAAAGATAAAGATGCCAATGCGTTGAC
1 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGAC-T-----T-AAG-TGCCAATATGCTGAT
* *
122003 TCAAGGCTAGCGACATTGGTCTTAAAGATAATG
58 TCAAGGCCAGCGACATTGGTCTTAAAGACAA-G
* * *
122036 GTGCCAACATGGTGATTCAAGGCCAGCGATATTGGACTTAA
1 GTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAA
122077 AGGTGTCACA
Statistics
Matches: 262, Mismatches: 42, Indels: 34
0.78 0.12 0.10
Matches are distributed among these distances:
87 72 0.27
88 1 0.00
89 1 0.00
90 1 0.00
91 41 0.16
92 1 0.00
93 1 0.00
94 2 0.01
95 37 0.14
97 39 0.15
98 31 0.12
99 35 0.13
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (89 bp):
GTGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAGTGCCAATATGCTGATTCAAGGCC
AGCGACATTGGTCTTAAAGACAAG
Found at i:122217 original size:34 final size:33
Alignment explanation
Indices: 122075--122620 Score: 358
Period size: 34 Copynumber: 17.0 Consensus size: 33
122065 TATTGGACTT
* * * *
122075 AAAGGTGTCACAGAGTTGTGGACTT-ACAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
* **
122107 AAAGGGATGCCACGGAGGTGTAGG-CTTAGAAGGGAA
1 AAA-GG-TGCCACGGAGTTGT-GGACTTA-AAAAGAA
* **
122143 AAGGGTGCCACGGAGTCATGGACTTAAAAAG-A
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
* *
122175 AAAGGTGCCACAGAGTTGTGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAAGAA
* *
122209 AAAGGTGCCATGGAGTTGTAGACTT-------A
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
* *
122235 AAAGGTGCCACGGAGTTGTGGACTCAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
* * *
122268 AAAGAGTGCCATGGAGTTGTGGGCTTTGAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGAC-TTAAAAAGAA
* * *
122303 AAAGGTGGCACAGAGTTGTGTACTT-AAAAG--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
* *
122333 ---GGTGCCACGGAGTTATGGACTTAAAAGGAAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAG-AA
* * *
122364 AAAAGTGCCACGGAGTTATGGGCTTTAAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAAGAA
* *
122398 AAAAGTGCCATGGAGTTGTGGACTT------AA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
** *
122425 AAAGGTGCCACATAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
** * *
122458 AAAGAGCACCACAGAGTTGTGGGCTTCAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGACTT-AAAAAGAA
*
122493 AAAGGTGCCACGAAGTTGTGGACTT----AG--
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
* * * *
122520 AAGGGTGCCATGGAGTTATGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
* *
122553 AAAGAGTGCCACGGAGTTTTGGGCTTTAGAAAA-AA
1 AAAG-GTGCCACGGAGTTGTGGAC-TTA-AAAAGAA
*
122588 AAAGGTGCCACGAAGTTGTGGACTTAGAAAAGA
1 AAAGGTGCCACGGAGTTGTGGACTTA-AAAAGA
122621 GATGCCACTA
Statistics
Matches: 400, Mismatches: 71, Indels: 84
0.72 0.13 0.15
Matches are distributed among these distances:
26 23 0.06
27 62 0.16
28 4 0.01
29 2 0.00
31 1 0.00
32 27 0.07
33 43 0.11
34 186 0.47
35 42 0.10
36 10 0.03
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.20
Consensus pattern (33 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA
Found at i:122241 original size:60 final size:60
Alignment explanation
Indices: 122174--122461 Score: 221
Period size: 61 Copynumber: 4.6 Consensus size: 60
122164 ACTTAAAAAG
* *
122174 AAAAGGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCATGGAGTTGTAGACTT-
1 AAAAGGTGCCACAGAGTTGTGGAC-TTAAAAAGAAAAAGGTGCCATGGAGTTGTGGACTTA
* * * *
122234 AAAAGGTGCCACGGAGTTGTGGACTCAAAAGGAAAAAGAGTGCCATGGAGTTGTGGGCTTTGAAA
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAAGAAAAAG-GTGCCATGGAGTTGTGGAC-TT----
122299 AGA
60 --A
* * * *
122302 AAAAGGTGGCACAGAGTTGTGTACTT-AAAAG-----GGTGCCACGGAGTTATGGACTTAAAAGG
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAAGAAAAAGGTGCCATGGAGTTGTGGACTT------
122361 AA
60 -A
* * * * *
122363 AAAAAGTGCCACGGAGTTATGGGCTTTAAAAAGAAAAAAGTGCCATGGAGTTGTGGACTTA
1 AAAAGGTGCCACAGAGTTGTGGAC-TTAAAAAGAAAAAGGTGCCATGGAGTTGTGGACTTA
* *
122424 AAAAGGTGCCACATAGTTGTGGACTTAAAAGGAAAAAG
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAAGAAAAAG
122462 AGCACCACAG
Statistics
Matches: 177, Mismatches: 34, Indels: 34
0.72 0.14 0.14
Matches are distributed among these distances:
59 12 0.07
60 53 0.30
61 59 0.33
62 3 0.02
63 5 0.03
67 4 0.02
68 41 0.23
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.21
Consensus pattern (60 bp):
AAAAGGTGCCACAGAGTTGTGGACTTAAAAAGAAAAAGGTGCCATGGAGTTGTGGACTTA
Found at i:122244 original size:26 final size:26
Alignment explanation
Indices: 122208--122265 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
122198 TTTAAAAAGA
* *
122208 AAAAGGTGCCATGGAGTTGTAGACTT
1 AAAAGGTGCCACGGAGTTGTAGACTC
*
122234 AAAAGGTGCCACGGAGTTGTGGACTC
1 AAAAGGTGCCACGGAGTTGTAGACTC
122260 AAAAGG
1 AAAAGG
122266 AAAAAGAGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.21
Consensus pattern (26 bp):
AAAAGGTGCCACGGAGTTGTAGACTC
Found at i:122345 original size:27 final size:27
Alignment explanation
Indices: 122301--122360 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
122291 CTTTGAAAAG
* * * *
122301 AAAAAGGTGGCACAGAGTTGTGTACTT
1 AAAAGGGTGCCACAGAGTTATGGACTT
*
122328 AAAAGGGTGCCACGGAGTTATGGACTT
1 AAAAGGGTGCCACAGAGTTATGGACTT
122355 AAAAGG
1 AAAAGG
122361 AAAAAAAGTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.22
Consensus pattern (27 bp):
AAAAGGGTGCCACAGAGTTATGGACTT
Found at i:122433 original size:27 final size:27
Alignment explanation
Indices: 122396--122453 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
122386 CTTTAAAAAG
**
122396 AAAAAAGTGCCATGGAGTTGTGGACTT
1 AAAAAAGTGCCACAGAGTTGTGGACTT
* *
122423 AAAAAGGTGCCACATAGTTGTGGACTT
1 AAAAAAGTGCCACAGAGTTGTGGACTT
122450 AAAA
1 AAAA
122454 GGAAAAAGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (27 bp):
AAAAAAGTGCCACAGAGTTGTGGACTT
Found at i:122529 original size:27 final size:27
Alignment explanation
Indices: 122491--122550 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
122481 CTTCAAAAAG
* *
122491 AAAAAGGTGCCACGAAGTTGTGGACTT
1 AAAAGGGTGCCACGAAGTTATGGACTT
* * *
122518 AGAAGGGTGCCATGGAGTTATGGACTT
1 AAAAGGGTGCCACGAAGTTATGGACTT
122545 AAAAGG
1 AAAAGG
122551 AAAAAGAGTG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.12, G:0.33, T:0.22
Consensus pattern (27 bp):
AAAAGGGTGCCACGAAGTTATGGACTT
Found at i:122616 original size:95 final size:95
Alignment explanation
Indices: 122141--122613 Score: 641
Period size: 95 Copynumber: 5.0 Consensus size: 95
122131 CTTAGAAGGG
* * *
122141 AAAAGGGTGCCACGGAGTCATGGACTTAAAAAG-AAAAG-GTGCCACAGAGTTGTGGGCTTTAAA
1 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
* * *
122204 AAGAAAAAGGTGCCATGGAGTTGTAGACTT
66 AAGAAAAAGGTGCCACGAAGTTGTGGACTT
* * * *
122234 AAAA-GGTGCCACGGAGTTGTGGACTCAAAAGGAAAAAGAGTGCCATGGAGTTGTGGGCTTTGAA
1 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
* *
122298 AAGAAAAAGGTGGCAC-AGAGTTGTGTACTT
66 AAGAAAAAGGTGCCACGA-AGTTGTGGACTT
* *
122328 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAAAAAAAGTGCCACGGAGTTATGGGCTTTAAA
1 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
* * *
122393 AAGAAAAAAGTGCCATGGAGTTGTGGACTT
66 AAGAAAAAGGTGCCACGAAGTTGTGGACTT
* ** * ** * *
122423 AAAAAGGTGCCACATAGTTGTGGACTTAAAAGGAAAAAGAGCACCACAGAGTTGTGGGCTTCAAA
1 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
122488 AAGAAAAAGGTGCCACGAAGTTGTGGACTT
66 AAGAAAAAGGTGCCACGAAGTTGTGGACTT
* * *
122518 AGAAGGGTGCCATGGAGTTATGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTTTGGGCTTTAGA
1 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTA-A
122583 AAA-AAAAAGGTGCCACGAAGTTGTGGACTT
65 AAAGAAAAAGGTGCCACGAAGTTGTGGACTT
122613 A
1 A
122614 GAAAAGAGAT
Statistics
Matches: 327, Mismatches: 47, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
92 24 0.07
93 9 0.03
94 50 0.15
95 240 0.73
96 4 0.01
ACGTcount: A:0.37, C:0.12, G:0.30, T:0.21
Consensus pattern (95 bp):
AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
AAGAAAAAGGTGCCACGAAGTTGTGGACTT
Found at i:122751 original size:63 final size:62
Alignment explanation
Indices: 122605--123123 Score: 615
Period size: 63 Copynumber: 8.3 Consensus size: 62
122595 CCACGAAGTT
* * * * * *
122605 GTGGAC-TT-AGAAAAGAGATGCCACTAAGTCGTGAACTTGGAAGAAAAGGTGCCACTAAGTC
1 GTGGACTTTGAGAAAAGAGATGCCACTGAGTCGTGGACTTTG-AGAAGAGATGCCACTGAGTC
* *
122666 GTGGAC-TT-AGAAAGGAGATGCCACTGAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTC
1 GTGGACTTTGAGAAAAGAGATGCCACTGAGTCGTGGACTTTGAGAAGAGATGCCACTGAGTC
* * *
122726 GTGGACTTTGAAGAAAAAAGATGCCACTAAGTGGTGGACTTTGAGAAGAGATGCCACTGAGTC
1 GTGGACTTTG-AGAAAAGAGATGCCACTGAGTCGTGGACTTTGAGAAGAGATGCCACTGAGTC
*
122789 GTGGACTTTGA-AAGAAGAGATGCCACTGAGTTGTGGACTTTGAGAAGAGATGCCACTGAGTC
1 GTGGACTTTGAGAA-AAGAGATGCCACTGAGTCGTGGACTTTGAGAAGAGATGCCACTGAGTC
* * * *
122851 ATGGACTTTGAGAAGAGAGATGCCATTGAGTCGTGGACTTTGAGAAGAGATTGCCACTAAGTC
1 GTGGACTTTGAGAAAAGAGATGCCACTGAGTCGTGGACTTTGAGAAGAGA-TGCCACTGAGTC
* * * * * *
122914 ATGGACTTTGAGAAAAGAGATGCCACTGAGTCATGGACTTTAAGAAAAGAAATGCCACTGAATT
1 GTGGACTTTGAGAAAAGAGATGCCACTGAGTCGTGGACTTT--GAGAAGAGATGCCACTGAGTC
122978 GT-GACTTTGAG--AAGAGATGGCCACTGAGTCGTGGACTTTGAGAAAAGAGATGCCACTGAGTC
1 GTGGACTTTGAGAAAAGAGAT-GCCACTGAGTCGTGGACTTTGAG--AAGAGATGCCACTGAGTC
* * * * * * *
123040 ATTGAGTTTGAGAAAAGA-TTGCCACTGAGTCGTGGACTTTAAGAAAAGAGATGCCACTAAGTT
1 GTGGACTTTGAGAAAAGAGATGCCACTGAGTCGTGGACTTT--GAGAAGAGATGCCACTGAGTC
123103 GTGGACTTTGAGAAAAGAGAT
1 GTGGACTTTGAGAAAAGAGAT
123124 TTGAAGAATT
Statistics
Matches: 396, Mismatches: 45, Indels: 31
0.84 0.10 0.07
Matches are distributed among these distances:
60 24 0.06
61 47 0.12
62 124 0.31
63 176 0.44
64 12 0.03
65 13 0.03
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (62 bp):
GTGGACTTTGAGAAAAGAGATGCCACTGAGTCGTGGACTTTGAGAAGAGATGCCACTGAGTC
Found at i:122829 original size:125 final size:125
Alignment explanation
Indices: 122605--123123 Score: 619
Period size: 125 Copynumber: 4.2 Consensus size: 125
122595 CCACGAAGTT
* * * * *
122605 GTGGAC-TT-AGAAAAGAGATGCCACTAAGTCGTGAACTTGGAAGAAAAGGTGCCACTAAGTCGT
1 GTGGACTTTGAGAAAAGAGATGCCACTAAGTCGTGGACTTTG-AGAAGAGATGCCACTAAGTCAT
* **
122668 GGAC-TT-AGAAAGGAGATGCCACTGAGTCGTGGACTTT-GGGAAGAGATGCCACTGAGTC
65 GGACTTTGAGAAAAGAGATGCCACTGAGTCGTGGACTTTAGAAAAGAGATGCCACTGAGTC
* * * *
122726 GTGGACTTTGAAGAAAAAAGATGCCACTAAGTGGTGGACTTTGAGAAGAGATGCCACTGAGTCGT
1 GTGGACTTTG-AGAAAAGAGATGCCACTAAGTCGTGGACTTTGAGAAGAGATGCCACTAAGTCAT
* *
122791 GGACTTTGA-AAGAAGAGATGCCACTGAGTTGTGGACTTT-GAGAAGAGATGCCACTGAGTC
65 GGACTTTGAGAA-AAGAGATGCCACTGAGTCGTGGACTTTAGAAAAGAGATGCCACTGAGTC
* * * *
122851 ATGGACTTTGAGAAGAGAGATGCCATTGAGTCGTGGACTTTGAGAAGAGATTGCCACTAAGTCAT
1 GTGGACTTTGAGAAAAGAGATGCCACTAAGTCGTGGACTTTGAGAAGAGA-TGCCACTAAGTCAT
* * * *
122916 GGACTTTGAGAAAAGAGATGCCACTGAGTCATGGACTTTAAGAAAAGAAATGCCACTGAATT
65 GGACTTTGAGAAAAGAGATGCCACTGAGTCGTGGACTTT-AGAAAAGAGATGCCACTGAGTC
* *
122978 GT-GACTTTGAG--AAGAGATGGCCACTGAGTCGTGGACTTTGAGAAAAGAGATGCCACTGAGTC
1 GTGGACTTTGAGAAAAGAGAT-GCCACTAAGTCGTGGACTTTGAG--AAGAGATGCCACTAAGTC
* * * * *
123040 ATTGAGTTTGAGAAAAGA-TTGCCACTGAGTCGTGGACTTTAAGAAAAGAGATGCCACTAAGTT
63 ATGGACTTTGAGAAAAGAGATGCCACTGAGTCGTGGACTTT-AGAAAAGAGATGCCACTGAGTC
123103 GTGGACTTTGAGAAAAGAGAT
1 GTGGACTTTGAGAAAAGAGAT
123124 TTGAAGAATT
Statistics
Matches: 347, Mismatches: 35, Indels: 25
0.85 0.09 0.06
Matches are distributed among these distances:
121 6 0.02
122 2 0.01
123 23 0.07
124 73 0.21
125 165 0.48
126 47 0.14
127 24 0.07
128 7 0.02
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (125 bp):
GTGGACTTTGAGAAAAGAGATGCCACTAAGTCGTGGACTTTGAGAAGAGATGCCACTAAGTCATG
GACTTTGAGAAAAGAGATGCCACTGAGTCGTGGACTTTAGAAAAGAGATGCCACTGAGTC
Found at i:123001 original size:157 final size:155
Alignment explanation
Indices: 122593--123120 Score: 646
Period size: 157 Copynumber: 3.4 Consensus size: 155
122583 AAAAAAAAGG
* * * * *
122593 TGCCACGAAGTTGTGGAC-TT-AGAAAAGAGATGCCACTAAGTCGTGAACTTGGAAGAAAAG-GT
1 TGCCACTAAGTCGTGGACTTTGAGAAAAGAGATGCCACTAAGTCGTGGACTT-TAAGAAAAGAAT
* * *
122655 GCCACT-AAGTCGTGGACTTAGA-AAGGAGATGCCACTGAGTCGTGGACTTTG-GGAAGAGATGC
65 GCCACTGAA-TTGTGGACTTTGAGAA-GAGATGCCACTGAGTCGTGGACTTTGAGAAAGAGATGC
122717 CACTGAGTCGTGGACTTTGAAGAAAAAAGA-
128 CACTGAGTCGTGGACTTTG-AG--AAAAGAT
* * *
122747 TGCCACTAAGTGGTGGACTTTGAG--AAGAGATGCCACTGAGTCGTGGACTTTGAA-AGAAGAGA
1 TGCCACTAAGTCGTGGACTTTGAGAAAAGAGATGCCACTAAGTCGTGGACTTT-AAGAAAAGA-A
* *
122809 TGCCACTGAGTTGTGGACTTTGAGAAGAGATGCCACTGAGTCATGGACTTTGAGAAGAGAGATGC
64 TGCCACTGAATTGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTTGAGAA-AGAGATGC
* *
122874 CATTGAGTCGTGGACTTTGAGAAGAGAT
128 CACTGAGTCGTGGACTTTGAGAAAAGAT
* * *
122902 TGCCACTAAGTCATGGACTTTGAGAAAAGAGATGCCACTGAGTCATGGACTTTAAGAAAAGAAAT
1 TGCCACTAAGTCGTGGACTTTGAGAAAAGAGATGCCACTAAGTCGTGGACTTTAAGAAAAG-AAT
122967 GCCACTGAATTGT-GACTTTGAGAAGAGATGGCCACTGAGTCGTGGACTTTGAGAAAAGAGATGC
65 GCCACTGAATTGTGGACTTTGAGAAGAGAT-GCCACTGAGTCGTGGACTTTGAG-AAAGAGATGC
* * *
123031 CACTGAGTCATTGAGTTTGAGAAAAGAT
128 CACTGAGTCGTGGACTTTGAGAAAAGAT
* * * *
123059 TGCCACTGAGTCGTGGACTTTAAGAAAAGAGATGCCACTAAGTTGTGGACTTTGAGAAAAGA
1 TGCCACTAAGTCGTGGACTTTGAGAAAAGAGATGCCACTAAGTCGTGGACTTTAAGAAAAGA
123121 GATTTGAAGA
Statistics
Matches: 326, Mismatches: 32, Indels: 30
0.84 0.08 0.08
Matches are distributed among these distances:
153 4 0.01
154 47 0.14
155 67 0.21
156 28 0.09
157 177 0.54
158 3 0.01
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (155 bp):
TGCCACTAAGTCGTGGACTTTGAGAAAAGAGATGCCACTAAGTCGTGGACTTTAAGAAAAGAATG
CCACTGAATTGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTTGAGAAAGAGATGCCAC
TGAGTCGTGGACTTTGAGAAAAGAT
Found at i:123972 original size:13 final size:13
Alignment explanation
Indices: 123954--123978 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
123944 CTATTTATGA
123954 TGTATCGATACAC
1 TGTATCGATACAC
123967 TGTATCGATACA
1 TGTATCGATACA
123979 TGAATAGTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:124143 original size:53 final size:53
Alignment explanation
Indices: 124079--124215 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
124069 CTACTACCAA
*
124079 TGTATCGATACATATTTTGTGTATCGATATAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
124132 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
124185 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
124216 TATGCAATCT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 66 0.84
54 13 0.16
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:124248 original size:20 final size:20
Alignment explanation
Indices: 124185--124255 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
124175 GCCAATGTCC
**
124185 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
124205 TGTATCGATAC-TATGCAATC
1 TGTATCGATACATAT-TAATG
124225 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
124245 TGTATCGATAC
1 TGTATCGATAC
124256 TTTTCAGGGT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.07
20 38 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:124321 original size:21 final size:21
Alignment explanation
Indices: 124295--124335 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
124285 GTCAACCTTG
124295 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
124316 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
124336 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:130084 original size:52 final size:52
Alignment explanation
Indices: 129939--130064 Score: 216
Period size: 52 Copynumber: 2.4 Consensus size: 52
129929 AATATGAAAT
129939 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
* * *
129991 TTAGCCTGTATGTATTGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
*
130043 TTTGCCTGCATGTATCAATACA
1 TTTGCCTGCATGTATCGATACA
130065 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
Found at i:130091 original size:13 final size:13
Alignment explanation
Indices: 130073--130097 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
130063 CAAAGATCAG
130073 TGTATCGATACAA
1 TGTATCGATACAA
130086 TGTATCGATACA
1 TGTATCGATACA
130098 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:130177 original size:19 final size:18
Alignment explanation
Indices: 130150--130278 Score: 99
Period size: 19 Copynumber: 7.8 Consensus size: 18
130140 AGCAATACAT
*
130150 TGTACCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
130169 TGTATCGATAC--A-TT-
1 TGTATCGATACAAACTTA
130183 T-TATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
130201 TGTATCGATAC--AC---
1 TGTATCGATACAAACTTA
*
130214 TGTATTGATACAACACTTA
1 TGTATCGATACAA-ACTTA
130233 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
130246 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
130265 TGTATCGATACAAA
1 TGTATCGATACAAA
130279 TTGTTGAAAT
Statistics
Matches: 89, Mismatches: 3, Indels: 37
0.69 0.02 0.29
Matches are distributed among these distances:
13 30 0.34
14 2 0.02
15 2 0.02
16 8 0.09
17 2 0.02
18 3 0.03
19 42 0.47
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:130191 original size:32 final size:32
Alignment explanation
Indices: 130144--130276 Score: 221
Period size: 32 Copynumber: 4.2 Consensus size: 32
130134 CTTTGTAGCA
* *
130144 ATACATTGTACCGATACAAAACTTATGTATCG
1 ATACATTGTATCGATACAACACTTATGTATCG
*
130176 ATACATTTTATCGATACAACACTTATGTATCG
1 ATACATTGTATCGATACAACACTTATGTATCG
* *
130208 ATACACTGTATTGATACAACACTTATGTATCG
1 ATACATTGTATCGATACAACACTTATGTATCG
130240 ATACATTGTATCGATACAACACTTATGTATCG
1 ATACATTGTATCGATACAACACTTATGTATCG
130272 ATACA
1 ATACA
130277 AATTGTTGAA
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 93 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (32 bp):
ATACATTGTATCGATACAACACTTATGTATCG
Found at i:142481 original size:20 final size:20
Alignment explanation
Indices: 142456--142494 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
142446 TACAAACTAT
142456 ACCTTTTC-AGAAAGATAATC
1 ACCTTTTCGA-AAAGATAATC
142476 ACCTTTTCGAAAAGATAAT
1 ACCTTTTCGAAAAGATAAT
142495 TTCATGAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (20 bp):
ACCTTTTCGAAAAGATAATC
Found at i:148120 original size:388 final size:389
Alignment explanation
Indices: 147387--148331 Score: 1175
Period size: 388 Copynumber: 2.4 Consensus size: 389
147377 ACCTTCCATC
* * * * * *
147387 ATGACCATGCCCCGTTACCCACACACACGTGCCAACCGATCACGCGCGTAGTGACCGAGGGCCTC
1 ATGACCATGCCCCGTTACCCACAGACGCGTGCCAAACGATCGCGCACGTAGCGACCGAGGGCCTC
* * *
147452 ACCACGGATCACTTGGACCACGAAGGGTCTCCATCACTGTAGCTGGGCATCTGGTCACCGAAACC
66 ACCACGGATCACTTGGACCACGTAGGGTCTCCATCACTGTAGCTGGGCATCTGGTCATCGAAAAC
* * * * * * *
147517 CACCATCGTAAGGCACGCACGACCCAGATTTTATTCGAGAGGGACATTCTACCGAGGCATGGTCC
131 CATCATCGTAAGGCATGCAAGACCTAGATTTTAATC---AGGGACACTCTACAGAGGCATGGTCC
* * * * * *
147582 ATGCTAGGTGCACTGAGCACAATCCTTGATAGGCAACTAGCAAGACGTACCCACCGTTGCCGGTG
193 ATGCCAGGCGCACGGAGCACAATCCTTGATAGGCAACCAGCAAGACATACCCACCGTTGCCGATG
* * * *
147647 CAAGGGTCATGAGACAGCCCCTGCTTATAGGGCACGGCCAAGCTAAGCCCACACTTTCAGCTTCT
258 CAAAGGTCATGAGACAGCCCCTGCTTATAGGGCACAGCCAAGCTAAGCCCACACCTACAGCTTCT
* **
147712 GCCTGCGCCACAGTCGGTCCTAGAGTCTTCAGTAGCATCATCGCAGGAGCAAGCCAAACCTTCCG
323 ACCTGCGCCACAACCGGTCCTAGAGTCTTCAGTAGCATCATCGCAGGAGCAAGCCAAACCTTCCG
147777 GA
388 GA
** *
147779 ATGACCATGCCTTGTTACCCACAGACGCGTGCTAAACGATCGCGCACGTAGCGACCGAGGGCCTC
1 ATGACCATGCCCCGTTACCCACAGACGCGTGCCAAACGATCGCGCACGTAGCGACCGAGGGCCTC
* * *
147844 ACCATGGATCACTTTGACCGCGTTA-GGTCTCCATCACTGTAGCTGGGCATCTGGTCATCGAAAA
66 ACCACGGATCACTTGGACCACG-TAGGGTCTCCATCACTGTAGCTGGGCATCTGGTCATCGAAAA
* * **
147908 CCATTATCGTAAGGCATGCAAGACCT-GAATTTTAATC-GGGACACTCTGCTAG-GGTGTGGTCC
130 CCATCATCGTAAGGCATGCAAGACCTAG-ATTTTAATCAGGGACACTCTAC-AGAGGCATGGTCC
* * * * * **
147970 ATGCCAGGCGTACGGAGCACAATCCTTGATAGGCAACCAGCAGGATATACCTATCGTTGTTGATG
193 ATGCCAGGCGCACGGAGCACAATCCTTGATAGGCAACCAGCAAGACATACCCACCGTTGCCGATG
* *
148035 CAAAGGTCATGAGACTGCCCCTG-TTCATAGGGCACAGCCAAGCTAAGCCTACACCTACAGCTTC
258 CAAAGGTCATGAGACAGCCCCTGCTT-ATAGGGCACAGCCAAGCTAAGCCCACACCTACAGCTTC
* * * *
148099 TACCTGCGCCACAACCGGTCCTAGAGTTTTCGGTAGCATCATCGTAGGAGCAAGCCGAACCTTCC
322 TACCTGCGCCACAACCGGTCCTAGAGTCTTCAGTAGCATCATCGCAGGAGCAAGCCAAACCTTCC
*
148164 GGC
387 GGA
* * * * *
148167 ATAACCATGCCCCGTTACCCGCATG-CGCGTGCCAAACGATCGTGCACGTAGCCACCGAAGGCCT
1 ATGACCATGCCCCGTTACCCACA-GACGCGTGCCAAACGATCGCGCACGTAGCGACCGAGGGCCT
* * * * * *
148231 CACCACAGATCACTTGGACCACGTATGGTCTCCATCATTGTAGCTAGGCATCCGATCATCGAAAA
65 CACCACGGATCACTTGGACCACGTAGGGTCTCCATCACTGTAGCTGGGCATCTGGTCATCGAAAA
*
148296 CCATGATCGTAAGGCATGCACA-ACCTAGATTTTAAT
130 CCATCATCGTAAGGCATGCA-AGACCTAGATTTTAAT
148332 GAAGAGGGAC
Statistics
Matches: 475, Mismatches: 70, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
387 4 0.01
388 324 0.68
389 4 0.01
391 1 0.00
392 141 0.30
393 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.24, T:0.20
Consensus pattern (389 bp):
ATGACCATGCCCCGTTACCCACAGACGCGTGCCAAACGATCGCGCACGTAGCGACCGAGGGCCTC
ACCACGGATCACTTGGACCACGTAGGGTCTCCATCACTGTAGCTGGGCATCTGGTCATCGAAAAC
CATCATCGTAAGGCATGCAAGACCTAGATTTTAATCAGGGACACTCTACAGAGGCATGGTCCATG
CCAGGCGCACGGAGCACAATCCTTGATAGGCAACCAGCAAGACATACCCACCGTTGCCGATGCAA
AGGTCATGAGACAGCCCCTGCTTATAGGGCACAGCCAAGCTAAGCCCACACCTACAGCTTCTACC
TGCGCCACAACCGGTCCTAGAGTCTTCAGTAGCATCATCGCAGGAGCAAGCCAAACCTTCCGGA
Found at i:168547 original size:52 final size:51
Alignment explanation
Indices: 168486--168824 Score: 215
Period size: 52 Copynumber: 6.4 Consensus size: 51
168476 GAGATAACAA
* * *
168486 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGT-GTTTTGGAAATAAAACCGG
* * *
168538 AGTTGGAGTATCCCCAATTAAAG-GAAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT---GTGAAAAATTGGTGTTTTGGAAATAAAACCGG
* * *
168591 GGTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTGGAAATAAAACCGG
** * *** * *
168643 GGTTGGAGTATCCCC---TCAGAAATAACGGGGTTGGAGTATCCCCGATGAT-TAA-CGG
1 GGTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTGT-T-TTGGA-AATAAAACCGG
* * *
168698 GGTTGGAGTATCCCCGATTGTGAAAATTTGGTGTTTTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTGTGAAAAATTGGTG---TTTTGGAAATAAAACCGG
* * * * * *
168752 AGTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTGGAAATAAAACCGG
* *
168803 AGTTGGAATATCCCCGATTGTG
1 GGTTGGAGTATCCCCGATTGTG
168825 GAGAATTGAG
Statistics
Matches: 222, Mismatches: 41, Indels: 48
0.71 0.13 0.15
Matches are distributed among these distances:
48 4 0.02
49 3 0.01
50 1 0.00
51 34 0.15
52 64 0.29
53 38 0.17
54 46 0.21
55 21 0.09
56 3 0.01
57 3 0.01
58 5 0.02
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGG
Found at i:168703 original size:27 final size:28
Alignment explanation
Indices: 168640--168715 Score: 111
Period size: 27 Copynumber: 2.8 Consensus size: 28
168630 GCAATAAAAC
*
168640 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
168668 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
168695 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
168716 TGTGAAAATT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 26 0.58
28 19 0.42
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:168793 original size:212 final size:213
Alignment explanation
Indices: 168378--168826 Score: 609
Period size: 212 Copynumber: 2.1 Consensus size: 213
168368 GAAAATAACA
* * * * * *
168378 GGGTTGGAGTATCCCCAATTAT-GAGAAATCAATATTTTGGGAATAAAGCCAGGGTCGGAGTATC
1 GGGTTGGAGTATCCCCGATTGTGGAAAAATCAATATTTTAGCAATAAAACCAGGGTCGGAGTATC
* * *
168442 CCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAGATAACAAGGTTGGAGTATCCTCGATTGT
66 CCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAGATAACAAGGTTGGAGTATCCCCGATTGT
* *
168507 GAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCAATTAAAGGAAAAATTGGT
131 GAAAAATTGGTATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCAATTAAAGGAAAAATTAGT
*
168572 GTTTTGAAAATAAAACCG
196 GTCTTGAAAATAAAACCG
* * * * *
168590 GGGTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAAACCGGGGTTGGAGTATC
1 GGGTTGGAGTATCCCCGATTGTGGAAAAATCAATATTTTAGCAATAAAACCAGGGTCGGAGTATC
* **
168655 CCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGA-TTAACGGGGTTGGAGTATCCCCGATTGT
66 CCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAGATAACAAGGTTGGAGTATCCCCGATTGT
* * * *
168719 GAAAATTTGGTGTTTTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATTATA-G-AAAATTA
131 GAAAAATT-G-GTATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCAATTAAAGGAAAAATTA
*
168782 GTGTCTTGAAAATAAAATCG
194 GTGTCTTGAAAATAAAACCG
* *
168802 GAGTTGGAATATCCCCGATTGTGGA
1 GGGTTGGAGTATCCCCGATTGTGGA
168827 GAATTGAGAA
Statistics
Matches: 207, Mismatches: 27, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
212 98 0.47
213 69 0.33
214 40 0.19
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (213 bp):
GGGTTGGAGTATCCCCGATTGTGGAAAAATCAATATTTTAGCAATAAAACCAGGGTCGGAGTATC
CCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAGATAACAAGGTTGGAGTATCCCCGATTGT
GAAAAATTGGTATTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCAATTAAAGGAAAAATTAGT
GTCTTGAAAATAAAACCG
Found at i:168809 original size:51 final size:52
Alignment explanation
Indices: 168699--168821 Score: 151
Period size: 51 Copynumber: 2.3 Consensus size: 52
168689 GATTAACGGG
* * * *
168699 GTTGGAGTATCCCCGATTGTGAAAATTTGGTGTTTTTTTGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTATGAAAATTTAGTG--TTCTTGAAAATAAAATCAGA
*
168753 GTTGGAGTATCCCCGATTATAGAAAA-TTAGTG-TCTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAT-GAAAATTTAGTGTTCTTGAAAATAAAATCAGA
*
168804 GTTGGAATATCCCCGATT
1 GTTGGAGTATCCCCGATT
168822 GTGGAGAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
51 33 0.53
54 24 0.39
55 5 0.08
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTATGAAAATTTAGTGTTCTTGAAAATAAAATCAGA
Found at i:183419 original size:28 final size:28
Alignment explanation
Indices: 183383--183450 Score: 102
Period size: 27 Copynumber: 2.5 Consensus size: 28
183373 ATAAAAGCAC
*
183383 GGTTGGAGTATCCCCTTAAAAATAACAG
1 GGTTGGAGTATCCCCTCAAAAATAACAG
* *
183411 GGTTGGAGTGT-CCCTCGAAAATAACAG
1 GGTTGGAGTATCCCCTCAAAAATAACAG
183438 GGTTGGAGTATCC
1 GGTTGGAGTATCC
183451 TCGATTGTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 24 0.69
28 11 0.31
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (28 bp):
GGTTGGAGTATCCCCTCAAAAATAACAG
Found at i:183646 original size:216 final size:216
Alignment explanation
Indices: 183272--183706 Score: 744
Period size: 216 Copynumber: 2.0 Consensus size: 216
183262 TATTCCCTCA
* *
183272 GGGACGCGGTTGGAATACATCTCCCGATGAGAAATTTGATATTTTGGAGATGACAACGGGGCTGG
1 GGGACGCGGTTGGAATACATCTCCCGATGAGAAATTTGATATTTTGGAGATGACAACAGGGCTAG
* *
183337 AGTATCCCCTGACTATGGAAAATTGGTGTTCTAAAAATAAAAGCACGGTTGGAGTATCCCCTTAA
66 AGTATCCCCTGACTATGGAAAATCGGTGTTCTAAAAATAAAAGCAAGGTTGGAGTATCCCCTTAA
*
183402 AAATAACAGGGTTGGAGTGTCCCTCGAAAATAACAGGGTTGGAGTATCCTCGATTGTAAAAAATT
131 AAATAACAGGGTTGGAGTATCCCTCGAAAATAACAGGGTTGGAGTATCCTCGATTGTAAAAAATT
* *
183467 GGTGTTTTAGAAATAAAATTG
196 GGTATTTTAGAAATAAAATCG
* * *
183488 GGGACGCGGTTGGAATACATCTCCTGATGAGAAATTTGATATTTTTGAGATGACAATAGGGCTAG
1 GGGACGCGGTTGGAATACATCTCCCGATGAGAAATTTGATATTTTGGAGATGACAACAGGGCTAG
* *
183553 AGTATCCCCTGACTATGGAAAATCGGTGTTCTAAAAATAAAATCAAGGTTGGAGTATCCCTTTAA
66 AGTATCCCCTGACTATGGAAAATCGGTGTTCTAAAAATAAAAGCAAGGTTGGAGTATCCCCTTAA
* *
183618 AAATAACGGGGTTGGAGTATCCCTCGAAAATAATAGGGTTGGAGTATCCTCGATTGTAAAAAATT
131 AAATAACAGGGTTGGAGTATCCCTCGAAAATAACAGGGTTGGAGTATCCTCGATTGTAAAAAATT
183683 GGTATTTTAGAAATAAAATCG
196 GGTATTTTAGAAATAAAATCG
183704 GGG
1 GGG
183707 TTGGAGTATC
Statistics
Matches: 205, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
216 205 1.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (216 bp):
GGGACGCGGTTGGAATACATCTCCCGATGAGAAATTTGATATTTTGGAGATGACAACAGGGCTAG
AGTATCCCCTGACTATGGAAAATCGGTGTTCTAAAAATAAAAGCAAGGTTGGAGTATCCCCTTAA
AAATAACAGGGTTGGAGTATCCCTCGAAAATAACAGGGTTGGAGTATCCTCGATTGTAAAAAATT
GGTATTTTAGAAATAAAATCG
Found at i:183656 original size:27 final size:27
Alignment explanation
Indices: 183599--183670 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
183589 ATAAAATCAA
** *
183599 GGTTGGAGTATCCCTTTAAAAATAACGG
1 GGTTGGAGTATCCC-TCGAAAATAACAG
*
183627 GGTTGGAGTATCCCTCGAAAATAATAG
1 GGTTGGAGTATCCCTCGAAAATAACAG
183654 GGTTGGAGTAT-CCTCGA
1 GGTTGGAGTATCCCTCGA
183671 TTGTAAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 6 0.15
27 20 0.50
28 14 0.35
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
GGTTGGAGTATCCCTCGAAAATAACAG
Found at i:183716 original size:51 final size:48
Alignment explanation
Indices: 183653--183766 Score: 131
Period size: 49 Copynumber: 2.3 Consensus size: 48
183643 GAAAATAATA
***
183653 GGGTTGGAGTAT-CCTCGATTGTAAAAAATTGGTATTTTAGAAATAAAATCG
1 GGGTTGGAGTATCCCT-GATTG--AAAAATCAATATTTTAGAAATAAAA-CG
* * *
183704 GGGTTGGAGTATCCCTGATTGAGAAATCAATGTTTTAGAAATAAAACT
1 GGGTTGGAGTATCCCTGATTGAAAAATCAATATTTTAGAAATAAAACG
183752 GGGTTGGAGTATCCC
1 GGGTTGGAGTATCCC
183767 CTCAAAAATA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
48 16 0.29
49 20 0.36
51 17 0.30
52 3 0.05
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (48 bp):
GGGTTGGAGTATCCCTGATTGAAAAATCAATATTTTAGAAATAAAACG
Found at i:186219 original size:20 final size:20
Alignment explanation
Indices: 186194--186234 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
186184 TAAACCCAGT
186194 ATGAACAATGTATCAATACA
1 ATGAACAATGTATCAATACA
*
186214 ATGAACAATGTATCGATACA
1 ATGAACAATGTATCAATACA
186234 A
1 A
186235 ATTGTGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.24
Consensus pattern (20 bp):
ATGAACAATGTATCAATACA
Found at i:187692 original size:28 final size:28
Alignment explanation
Indices: 187660--187715 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
187650 ACGTAGGGCC
*
187660 ATGGACCCTTTCATTTGATGCGATGCAT
1 ATGGACCCTTTCATTTGATGCAATGCAT
*
187688 ATGGACCTTTTCATTTGATGCAATGCAT
1 ATGGACCCTTTCATTTGATGCAATGCAT
187716 TTTGTCCCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (28 bp):
ATGGACCCTTTCATTTGATGCAATGCAT
Found at i:202610 original size:78 final size:78
Alignment explanation
Indices: 202452--202650 Score: 247
Period size: 78 Copynumber: 2.5 Consensus size: 78
202442 CTGACTATGG
* * *
202452 AAAATTGGTGTTCTAGAAATAAAGTCAGGGTTGGAGTATCCCCTTGAAAATAACGAGGTTAGAGT
1 AAAATTGGTGTTCTAGAAATAAAATCGGGGTTGGAGTAT-CCCTCGAAAATAACGAGGTTAGAGT
**
202517 ATCCCTGATTGTGA
65 ATCCCAAATTGTGA
* * * * *
202531 AAAATCGGTGTTCTAAAAATAAAA-CTGGGGTTGGAGTATCCCTCGAGAATAACGGGGTTGGAGT
1 AAAATTGGTGTTCTAGAAATAAAATC-GGGGTTGGAGTATCCCTCGAAAATAACGAGGTTAGAGT
*
202595 ATCTCAAATTGTGA
65 ATCCCAAATTGTGA
* * *
202609 AAATTTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCC
1 AAAATTGGTGTTCTAGAAATAAAATCGGGGTTGGAGTATCCC
202651 CGATTGTGGG
Statistics
Matches: 102, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
78 68 0.67
79 34 0.33
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (78 bp):
AAAATTGGTGTTCTAGAAATAAAATCGGGGTTGGAGTATCCCTCGAAAATAACGAGGTTAGAGTA
TCCCAAATTGTGA
Found at i:202690 original size:129 final size:130
Alignment explanation
Indices: 202508--202780 Score: 309
Period size: 130 Copynumber: 2.1 Consensus size: 130
202498 AAAATAACGA
* * ** * **
202508 GGTTAGAGTATCCCTGATTGTGAAAAATCGGTGTTCTAAAAATAAAACTGGGGTTGGAGTAT-CC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTCTAAAAATAAAACCGGGGTTAAAGTATCCC
* * * * *
202572 CTC-GAGAATAACGGGGTTGGAGTAT-CTCAAATTGTGAAAATTTGGTATTTTAGAAATAAAATC
66 CTCAGA-AATAACGGGATTGGAGTATCCTC-AACTATGAAAAATTGATATTTTAGAAATAAAATC
202635 GG
129 GG
** * * *
202637 GGTTGGAGTATCCCCGATTGTGGGAAATCAATGTTTTAGAAATAAAGCCGGGGTTAAAGTATCCC
1 GGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTCTAAAAATAAAACCGGGGTTAAAGTATCCC
* * * *
202702 CTCAGAAATAACGGGATTGGAGTATCCTCGACTATGAAAAATTGATGTTTTGGAAATAAAATTGG
66 CTCAGAAATAACGGGATTGGAGTATCCTCAACTATGAAAAATTGATATTTTAGAAATAAAATCGG
*
202767 GGTTGGAGCATCCC
1 GGTTGGAGTATCCC
202781 TTAGATGAAA
Statistics
Matches: 119, Mismatches: 22, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
129 50 0.42
130 64 0.54
131 5 0.04
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (130 bp):
GGTTGGAGTATCCCCGATTGTGAAAAATCAATGTTCTAAAAATAAAACCGGGGTTAAAGTATCCC
CTCAGAAATAACGGGATTGGAGTATCCTCAACTATGAAAAATTGATATTTTAGAAATAAAATCGG
Found at i:204693 original size:24 final size:23
Alignment explanation
Indices: 204642--204696 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
204632 TTTTCTAAGG
204642 GTTTTTTGCTGTTGGAAATTTTT
1 GTTTTTTGCTGTTGGAAATTTTT
*
204665 GTTTTCTGCTGTTGGAAATTTTT
1 GTTTTTTGCTGTTGGAAATTTTT
204688 GTTTTTTGC
1 GTTTTTTGC
204697 CAAAAAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.11, C:0.07, G:0.22, T:0.60
Consensus pattern (23 bp):
GTTTTTTGCTGTTGGAAATTTTT
Found at i:205986 original size:78 final size:83
Alignment explanation
Indices: 205795--206038 Score: 239
Period size: 78 Copynumber: 2.9 Consensus size: 83
205785 AGACAGAGCA
* * * * * *
205795 AAAAGGAAATTAAATGTGTCCTGCTTTTTGAGGACAAATGAAAAAAGAGAATAAAGTGCATCCTG
1 AAAAGGAAATGAAACGCGTCCTGCTCTTTGAGGACAAA-GGAGAAA-AGAA-AAA--GCATCCTG
* *
205860 CTCTTTGAGAACTAGAAGGGAAG
61 CTCTTTGAGGACTAAAAGGGAAG
* *
205883 AAAAGGAAATGAAGCGCGTCTTGCTCTTTGAGGACAAA-G-GAAAA-AAAAA-CATCCTGCTCTT
1 AAAAGGAAATGAAACGCGTCCTGCTCTTTGAGGACAAAGGAGAAAAGAAAAAGCATCCTGCTCTT
205944 TGAGGA-TAAAAGGGGAA-
66 TGAGGACTAAAA-GGGAAG
* * * * *
205961 AGAAGGAAATGAAATGTGTCCTGCTCTTTGAGGGCAAAGGAGAAAAGGAAAAAGCGTCCTGCTCT
1 AAAAGGAAATGAAACGCGTCCTGCTCTTTGAGGACAAAGGAGAAAA-GAAAAAGCATCCTGCTCT
*
206026 TTGAGGATTAAAA
65 TTGAGGACTAAAA
206039 AGTGCCACCA
Statistics
Matches: 132, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
78 36 0.27
79 23 0.17
80 5 0.04
82 8 0.06
83 19 0.14
84 6 0.05
85 3 0.02
88 32 0.24
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.22
Consensus pattern (83 bp):
AAAAGGAAATGAAACGCGTCCTGCTCTTTGAGGACAAAGGAGAAAAGAAAAAGCATCCTGCTCTT
TGAGGACTAAAAGGGAAG
Found at i:206167 original size:62 final size:62
Alignment explanation
Indices: 206002--206345 Score: 427
Period size: 62 Copynumber: 5.7 Consensus size: 62
205992 GGGCAAAGGA
* * *
206002 GAAAAGGAAAAA-GCGTCCTGCTCTTTGAGGATTAAAAAGTGCCACCAACTCATGTGGGCTTT
1 GAAAA-GAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT
* *
206064 GAAAAG-AAAAGACGTCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT
* * * * *
206125 CAAAAGAAAAAGGCATCTTGCTCTTTGAGGACTAAGAGGTGCCATCAACTCGTGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT
* * * * *
206187 GAAAAGAAAAAGGCATCTTGCTCTTTGAGGACTAAGAGGTGCCACCAACTTGCGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT
* * * *
206249 AAAAAGAAAAATGTGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTCGTGTGGGCTTT
*
206312 -------AAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTG
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTG
206346 AAAGGAGAGA
Statistics
Matches: 253, Mismatches: 26, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
55 6 0.02
56 25 0.10
60 4 0.02
61 51 0.20
62 141 0.56
63 26 0.10
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (62 bp):
GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT
Found at i:206521 original size:61 final size:61
Alignment explanation
Indices: 206369--206996 Score: 736
Period size: 62 Copynumber: 10.5 Consensus size: 61
206359 CCCTGCTCTT
* * * **
206369 TGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGACGTCCTAATCTTTGAGGACTAGAAAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACT-GAAAAG
* * ** * *
206431 TGCCACCAACTTATGTGGGCATTGCAAGGAGAAA-GCATCCTGCTCTTTGAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATCCTGCTCTTTGAGGACTGAAAAG
*
206492 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTTTTTGAGGACTAGAAAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACT-GAAAAG
* * *
206554 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACATCCTGCTCTTTGAGGATTG-AAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAG
* * * * *
206614 TGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCATCCTACTTTTTGAGGACAAGAAAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGAC-TGAAAAG
* *
206676 TCCCACCAACTTGTGTAGGG-TTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTG-AAGG
1 TGCCACCAACTTGTGT-GGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAG
* ** * *
206736 TGCCACCAGCTTGTGTGGGCTTT-----G-AAAGGTGTCTTGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAG
* *
206791 TGCTACCAACTTGTGTGGGCATTT-----G-AAAGGCATCTTGCTCTTTGAGGACTGGAAAA-
1 TGCCACCAACTTGTGTGGGC-TTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACT-GAAAAG
* * *
206847 TGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCCTTGAGTACTGAAAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAG
* *
206908 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCT-TTCTGAGGACTG-AAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTT-TGAGGACTGAAAAG
*
206968 TGCCACCAGCTTGTGTGGGCTTTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGG
206997 CGTCTTACTC
Statistics
Matches: 491, Mismatches: 57, Indels: 38
0.84 0.10 0.06
Matches are distributed among these distances:
54 23 0.05
55 24 0.05
56 45 0.09
57 5 0.01
59 3 0.01
60 112 0.23
61 125 0.25
62 148 0.30
63 6 0.01
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (61 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAAG
Found at i:206673 original size:122 final size:121
Alignment explanation
Indices: 206369--206996 Score: 746
Period size: 122 Copynumber: 5.2 Consensus size: 121
206359 CCCTGCTCTT
* * * **
206369 TGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGACGTCCTAATCTTTGAGGACTAGAAAAGTGC
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGAC-AGAAAAGTGC
* * ** *
206434 CACCAACTTATGTGGGCATTGCAAGGAGAAA-GCATCCTGCTCTTTGAGGACTGGAAGG
65 CACCAACTTGTGTGGGCTTTAAAAGGA-AAAGGCATCCTGCTCTTTGAGGA-TTGAAGG
*
206492 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTTTTTGAGGACTAGAAAAGTGC
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGAC-AGAAAAGTGC
*
206557 CACCAACTTGTGTGGGCTTTAAAAGGAAAAGACATCCTGCTCTTTGAGGATTGAAGG
65 CACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGATTGAAGG
* * * * *
206614 TGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCATCCTACTTTTTGAGGACAAGAAAAGTCC
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGAC-AGAAAAGTGC
*
206679 CACCAACTTGTGTAGGG-TTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAGG
65 CACCAACTTGTGT-GGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGATTGAAGG
* ** * * * *
206736 TGCCACCAGCTTGTGTGGGCTTT-----G-AAAGGTGTCTTGCTCTTTGAGGACTGAAAAATGCT
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACAGAAAAGTGCC
* * **
206795 ACCAACTTGTGTGGGCATTT-----G-AAAGGCATCTTGCTCTTTGAGGACTGGAAAA
66 ACCAACTTGTGTGGGC-TTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGA-TTGAAGG
* * * *
206847 TGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCCTTGAGTACTGAAAAGTGCC
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACAGAAAAGTGCC
* *
206912 ACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCT-TTCTGAGGACTGAAGG
66 ACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTT-TGAGGATTGAAGG
*
206968 TGCCACCAGCTTGTGTGGGCTTTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGG
206997 CGTCTTACTC
Statistics
Matches: 437, Mismatches: 50, Indels: 38
0.83 0.10 0.07
Matches are distributed among these distances:
110 22 0.05
111 25 0.06
114 3 0.01
115 19 0.04
116 26 0.06
117 45 0.10
121 33 0.08
122 161 0.37
123 103 0.24
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (121 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACAGAAAAGTGCC
ACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGATTGAAGG
Found at i:207063 original size:55 final size:55
Alignment explanation
Indices: 206369--207071 Score: 466
Period size: 62 Copynumber: 11.9 Consensus size: 55
206359 CCCTGCTCTT
* * **
206369 TGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGACGTCCTAATCTTTGAGGACTAGAAAA
1 TGCCACCAACTTGTGTGGGCTTT-----GAAAAGGCGTCCTGCTCTTTGAGGACT-GAAAA
* * * * **
206430 GTGCCACCAACTTATGTGGGCATTGCAAGGAGAAAGCATCCTGCTCTTTGAGGACTGGAAGG
1 -TGCCACCAACTTGTGTGGGCTTTG--A--A-AAGGCGTCCTGCTCTTTGAGGACT-GAAAA
* *
206492 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTTTTTGAGGACTAGAAAA
1 TGCCACCAACTTGTGTGGGCTTT-----GAAAAGGCGTCCTGCTCTTTGAGGACT-GAAAA
* * * **
206553 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGACATCCTGCTCTTTGAGGATTGAAGG
1 -TGCCACCAACTTGTGTGGGCTTT-----GAAAAGGCGTCCTGCTCTTTGAGGACTGAAAA
* * * * *
206614 TGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCATCCTACTTTTTGAGGACAAGAAAA
1 TGCCACCAACTTGTGTGGGCTTT-----GAAAAGGCGTCCTGCTCTTTGAGGAC-TGAAAA
* * **
206675 GTCCCACCAACTTGTGTAGGG-TTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTGAAGG
1 -TGCCACCAACTTGTGT-GGGCTTT-----GAAAAGGCGTCCTGCTCTTTGAGGACTGAAAA
* * *
206736 TGCCACCAGCTTGTGTGGGCTTTG-AAAGGTGTCTTGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAAA
* * *
206791 TGCTACCAACTTGTGTGGGCATTTG-AAAGGCATCTTGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGC-TTTGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAAA
* * * *
206847 TGCCACCAACTTATGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCCTTGAGTACTGAAAA
1 TGCCACCAACTTGTGTGGGCTTT-----GAAAAGGCGTCCTGCTCTTTGAGGACTGAAAA
**
206907 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCT-TTCTGAGGACTGAAGG
1 -TGCCACCAACTTGTGTGGGCTTT-----GAAAAGGCGTCCTGCTCTT-TGAGGACTGAAAA
* * * *
206968 TGCCACCAGCTTGTGTGGGCTTT-AAAAGGCGTCTTACTCTTTGAGGATTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAAA
* *
207023 TGCCACCAACTTGTAG-GGCCTTTGAAAA-ACGTCCTGCTCTTTGAGGACT
1 TGCCACCAACTTGT-GTGGGCTTTGAAAAGGCGTCCTGCTCTTTGAGGACT
207072 AAAGGGTGAA
Statistics
Matches: 539, Mismatches: 72, Indels: 67
0.79 0.11 0.10
Matches are distributed among these distances:
54 43 0.08
55 65 0.12
56 54 0.10
57 2 0.00
59 4 0.01
60 94 0.17
61 130 0.24
62 142 0.26
63 3 0.01
64 1 0.00
66 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (55 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAA
Found at i:211870 original size:18 final size:18
Alignment explanation
Indices: 211827--211863 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
211817 TCAACAAGCC
211827 TAACACTAGCCACATTGG
1 TAACACTAGCCACATTGG
211845 TAACACTAGCCACATTGG
1 TAACACTAGCCACATTGG
211863 T
1 T
211864 GCAACTACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.24
Consensus pattern (18 bp):
TAACACTAGCCACATTGG
Found at i:212940 original size:42 final size:42
Alignment explanation
Indices: 212885--213003 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
212875 TTCTTCTCTC
*
212885 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
* *
212927 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
* *
212969 CTCCTCCTATCATCCCTCCTCTCTCTTTTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCT
213004 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
Found at i:212944 original size:12 final size:11
Alignment explanation
Indices: 212918--212993 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
212908 TCTATTATCT
*
212918 CTCCTGTCTCTC
1 CTCCTATCTC-C
212930 CTCCTATCATCC
1 CTCCTATC-TCC
212942 CTCCTATCT--
1 CTCCTATCTCC
*
212951 CTACTATCT--
1 CTCCTATCTCC
*
212960 CTCCTGTCTCTC
1 CTCCTATCTC-C
212972 CTCCTATCATCC
1 CTCCTATC-TCC
*
212984 CTCCTCTCTC
1 CTCCTATCTC
212994 TTTTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:212945 original size:24 final size:24
Alignment explanation
Indices: 212909--212994 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
212899 CCTCCTCTCT
* *
212909 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
212933 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
212954 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
212975 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
212995 TTTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:212969 original size:18 final size:18
Alignment explanation
Indices: 212900--212970 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
212890 CCTGTCATCC
* *
212900 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
212918 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
212940 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
212960 CTCCTGTCTCT
1 CTCCTGTCTCT
212971 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:226255 original size:28 final size:28
Alignment explanation
Indices: 226219--226286 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 28
226209 ATAAAAGCAC
* *
226219 GGTTGGAGTATCCCCTTAAAAATAACGG
1 GGTTGGAGTATCCCCTCAAAAATAACAG
* *
226247 GGTTGGAGTGT-CCCTCGAAAATAACAG
1 GGTTGGAGTATCCCCTCAAAAATAACAG
226274 GGTTGGAGTATCC
1 GGTTGGAGTATCC
226287 TCGATTGTAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 23 0.68
28 11 0.32
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (28 bp):
GGTTGGAGTATCCCCTCAAAAATAACAG
Found at i:226482 original size:216 final size:216
Alignment explanation
Indices: 226108--226542 Score: 762
Period size: 216 Copynumber: 2.0 Consensus size: 216
226098 TATTCCCTCA
*
226108 GGGACGCGGTTGGAATACATCTCCCGATGAGAAATTTGATATTTTGGAGATGACAACGGGGCTGG
1 GGGACGCGGTTGGAATACATCTCCCGATGAGAAATTTGATATTTTGGAGATGACAACGGGGCTAG
* *
226173 AGTATCCCCTGACTATGGAAAATTGGTGTTCTAAAAATAAAAGCACGGTTGGAGTATCCCCTTAA
66 AGTATCCCCTGACTATGGAAAATCGGTGTTCTAAAAATAAAAGCAAGGTTGGAGTATCCCCTTAA
*
226238 AAATAACGGGGTTGGAGTGTCCCTCGAAAATAACAGGGTTGGAGTATCCTCGATTGTAAAAAATT
131 AAATAACGGGGTTGGAGTATCCCTCGAAAATAACAGGGTTGGAGTATCCTCGATTGTAAAAAATT
* *
226303 GGTGTTTTAGAAATAAAATTG
196 GGTATTTTAGAAATAAAATCG
* * *
226324 GGGACGCGGTTGGAATACATCTCCTGATGAGAAATTTGATATTTTTGAGATGACAATGGGGCTAG
1 GGGACGCGGTTGGAATACATCTCCCGATGAGAAATTTGATATTTTGGAGATGACAACGGGGCTAG
* *
226389 AGTATCCCCTGACTATGGAAAATCGGTGTTCTAAAAATAAAATCAAGGTTGGAGTATCCCTTTAA
66 AGTATCCCCTGACTATGGAAAATCGGTGTTCTAAAAATAAAAGCAAGGTTGGAGTATCCCCTTAA
*
226454 AAATAACGGGGTTGGAGTATCCCTCGAAAATAATAGGGTTGGAGTATCCTCGATTGTAAAAAATT
131 AAATAACGGGGTTGGAGTATCCCTCGAAAATAACAGGGTTGGAGTATCCTCGATTGTAAAAAATT
226519 GGTATTTTAGAAATAAAATCG
196 GGTATTTTAGAAATAAAATCG
226540 GGG
1 GGG
226543 TTGGAGTATC
Statistics
Matches: 207, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
216 207 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (216 bp):
GGGACGCGGTTGGAATACATCTCCCGATGAGAAATTTGATATTTTGGAGATGACAACGGGGCTAG
AGTATCCCCTGACTATGGAAAATCGGTGTTCTAAAAATAAAAGCAAGGTTGGAGTATCCCCTTAA
AAATAACGGGGTTGGAGTATCCCTCGAAAATAACAGGGTTGGAGTATCCTCGATTGTAAAAAATT
GGTATTTTAGAAATAAAATCG
Found at i:226492 original size:27 final size:27
Alignment explanation
Indices: 226435--226506 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
226425 ATAAAATCAA
** *
226435 GGTTGGAGTATCCCTTTAAAAATAACGG
1 GGTTGGAGTATCCC-TCGAAAATAACAG
*
226463 GGTTGGAGTATCCCTCGAAAATAATAG
1 GGTTGGAGTATCCCTCGAAAATAACAG
226490 GGTTGGAGTAT-CCTCGA
1 GGTTGGAGTATCCCTCGA
226507 TTGTAAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 6 0.15
27 20 0.50
28 14 0.35
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (27 bp):
GGTTGGAGTATCCCTCGAAAATAACAG
Found at i:226552 original size:51 final size:48
Alignment explanation
Indices: 226489--226602 Score: 131
Period size: 49 Copynumber: 2.3 Consensus size: 48
226479 GAAAATAATA
***
226489 GGGTTGGAGTAT-CCTCGATTGTAAAAAATTGGTATTTTAGAAATAAAATCG
1 GGGTTGGAGTATCCCT-GATTG--AAAAATCAATATTTTAGAAATAAAA-CG
* * *
226540 GGGTTGGAGTATCCCTGATTGAGAAATCAATGTTTTAGAAATAAAACT
1 GGGTTGGAGTATCCCTGATTGAAAAATCAATATTTTAGAAATAAAACG
226588 GGGTTGGAGTATCCC
1 GGGTTGGAGTATCCC
226603 CTCGAAAATA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
48 16 0.29
49 20 0.36
51 17 0.30
52 3 0.05
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (48 bp):
GGGTTGGAGTATCCCTGATTGAAAAATCAATATTTTAGAAATAAAACG
Found at i:229065 original size:20 final size:20
Alignment explanation
Indices: 229040--229096 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
229030 ATGTATCGAT
*
229040 ACAATGTATCGATGCAATGA
1 ACAATGTATCGATACAATGA
*
229060 ACAATGTATCAATACAATGA
1 ACAATGTATCGATACAATGA
229080 ACAATGTATCGATACAA
1 ACAATGTATCGATACAA
229097 ATTGTGAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.25
Consensus pattern (20 bp):
ACAATGTATCGATACAATGA
Found at i:230555 original size:28 final size:28
Alignment explanation
Indices: 230523--230578 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
230513 ACGTAGGGCC
*
230523 ATGGACCCTTTCATTTGATGCGATGCAT
1 ATGGACCCTTTCATTTGATGCAATGCAT
*
230551 ATGGACCTTTTCATTTGATGCAATGCAT
1 ATGGACCCTTTCATTTGATGCAATGCAT
230579 TTTGTCCCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (28 bp):
ATGGACCCTTTCATTTGATGCAATGCAT
Found at i:234885 original size:20 final size:20
Alignment explanation
Indices: 234862--234915 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
234852 TATATAGGTA
234862 TTTGTATCGATACATTATGC
1 TTTGTATCGATACATTATGC
*
234882 TTTGTATCGATACA-TATTC
1 TTTGTATCGATACATTATGC
* *
234901 ATTGTATTGATACAT
1 TTTGTATCGATACAT
234916 GGACAATTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (20 bp):
TTTGTATCGATACATTATGC
Found at i:234999 original size:13 final size:13
Alignment explanation
Indices: 234981--235033 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
234971 CGATATATGG
234981 TACATTGTATCGA
1 TACATTGTATCGA
*
234994 TACATTGTATCAA
1 TACATTGTATCGA
235007 TACA-TG-AT-G-
1 TACATTGTATCGA
235016 -A-ATTGTATCGA
1 TACATTGTATCGA
235027 TACATTG
1 TACATTG
235034 CTTGTAACGG
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 1 0.03
11 2 0.06
12 3 0.09
13 20 0.62
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:243748 original size:37 final size:38
Alignment explanation
Indices: 243679--243750 Score: 101
Period size: 37 Copynumber: 1.9 Consensus size: 38
243669 TTGGGTGCTA
*
243679 TTGCTACTGGAAGCTACTGGAGCTGTTGGTGGAAGTTG
1 TTGCTACTGGAAGCTACTGGAGCTGTTCGTGGAAGTTG
* * *
243717 TTGCTGCTGG-AGCTGCTGGAGGTGTTCGTGGAAG
1 TTGCTACTGGAAGCTACTGGAGCTGTTCGTGGAAG
243751 CTGCTAGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
37 21 0.70
38 9 0.30
ACGTcount: A:0.15, C:0.14, G:0.40, T:0.31
Consensus pattern (38 bp):
TTGCTACTGGAAGCTACTGGAGCTGTTCGTGGAAGTTG
Done.