Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold53
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4419549
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 41486 characters in sequence are not A, C, G, or T
File 11 of 28
Found at i:1646357 original size:169 final size:169
Alignment explanation
Indices: 1646182--1646889 Score: 433
Period size: 169 Copynumber: 4.2 Consensus size: 169
1646172 TTGATCGAGG
** * ** *
1646182 CTCGGGAGATTTTTCCATTAATTGTCTGCCCATCAGCTTAGACCCGAGAGACTT-CTTCATCCAT
1 CTCGGGAGACCTTTCCATAAATCATCTGCCCATCAGCTTAGACCCGAGAGACTTCCTTCATCAAT
* * * * * * ** *
1646246 TATCCACCCGTC-GACTTAGACATGAGAGACTTTGTTTGTCAATCGTCTACTTGTCGGCTTAGAG
66 CATCCACCCATCAG-CTAAGACACGAGAGACTTCGGTTGTCAATCGTCTACCCGTCGGCTTAGAC
* ** *
1646310 TCAGGAGACTTTTTCATCAATCGTCTGGCCGTCGGCTTAGA
130 TCAGGAGAC-TTTTCATCAATCATCTACCCATCGGCTTAGA
* ** * * **
1646351 CTCGGGAGACCCTTT-CATAAATCATTTGCCCATCAATTTAGACTCGAGAAACTTCCTTTGTCAA
1 CTCGGGAGA-CCTTTCCATAAATCATCTGCCCATCAGCTTAGACCCGAGAGACTTCCTTCATCAA
* * * *
1646415 TCATCTACCTATCAGCTAAGACCCGGGAGACTTCGGTTGTCAATCGTCTACCCGTCGGCTTAGAC
65 TCATCCACCCATCAGCTAAGACACGAGAGACTTCGGTTGTCAATCGTCTACCCGTCGGCTTAGAC
**
1646480 TTGGGAGACTTTTCATCAATCATCTACCCATCGGCTTAGA
130 TCAGGAGACTTTTCATCAATCATCTACCCATCGGCTTAGA
* * * * *
1646520 CTCGGGAGACCTTTCCATCAATCATCTACCCATCGGCTTAGACCCGAGAGATTTCCTTTATCAAT
1 CTCGGGAGACCTTTCCATAAATCATCTGCCCATCAGCTTAGACCCGAGAGACTTCCTTCATCAAT
* ** * * * * * ** * ** *
1646585 CGT-CTGCCATCGGTTTAGACCCGGGAGACTTCCTTTTTCAATCGTCTACTTGTCGGCTTATA-T
66 CATCCACCCATCAGCTAAGACACGAGAGACTTCGGTTGTCAATCGTCTACCCGTCGGCTTAGACT
* * * * * ** *
1646648 CTGGTCGACTCTTCCATCAATCATTTGCCTGTCAGCTTAGA
131 CAGG-AGACT-TTTCATCAATCATCTACCCATCGGCTTAGA
* * * * ** * * * *
1646689 C-CTGGGAGACTTTTCCATTAATCGTCTACCCATTGGCTGAGACTCG-GAAGACTTCTTTTATCA
1 CTC-GGGAGACCTTTCCATAAATCATCTGCCCATCAGCTTAGACCCGAG-AGACTTCCTTCATCA
* * * * * * * ** * * * *
1646752 ATCGTCTACCGATTAGCTGAGACCCGAAAGACTTCTTTTATCAATCGTCTGCTCATCGGCTTAGA
64 ATCATCCACCCATCAGCTAAGACACGAGAGACTTCGGTTGTCAATCGTCTACCCGTCGGCTTAGA
** * * *
1646817 C-CTAGGAGACTTCTTTTGTCAATCATCTGCCCGTCGACTTAGA
129 CTC-AGGAGAC-T-TTTCATCAATCATCTACCCATCGGCTTAGA
* * ** * *
1646860 CCCGAGAGAGTTTTCAATTAATCATCTGCC
1 CTCGGGAGACCTTTCCATAAATCATCTGCC
1646890 AATTGGCTTA
Statistics
Matches: 423, Mismatches: 103, Indels: 24
0.77 0.19 0.04
Matches are distributed among these distances:
167 3 0.01
168 57 0.13
169 198 0.47
170 113 0.27
171 51 0.12
172 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.32
Consensus pattern (169 bp):
CTCGGGAGACCTTTCCATAAATCATCTGCCCATCAGCTTAGACCCGAGAGACTTCCTTCATCAAT
CATCCACCCATCAGCTAAGACACGAGAGACTTCGGTTGTCAATCGTCTACCCGTCGGCTTAGACT
CAGGAGACTTTTCATCAATCATCTACCCATCGGCTTAGA
Found at i:1647696 original size:42 final size:42
Alignment explanation
Indices: 1647650--1647760 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
1647640 GCACATCGAT
* * * * * *
1647650 TTAGACTCGGGAGACTTTTTCATTAATTGTCTGCCTGTTAGC
1 TTAGACTTGGGAGACTTTTCCATCAATTATCTGCCTATCAGC
** *
1647692 TTAGACTTGCAAGACTTTTCCATCAATTATCTGCCTATCGGC
1 TTAGACTTGGGAGACTTTTCCATCAATTATCTGCCTATCAGC
*
1647734 TTAGACTTGGGATACTTTTCCATCAAT
1 TTAGACTTGGGAGACTTTTCCATCAAT
1647761 AGATGTCCAC
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.39
Consensus pattern (42 bp):
TTAGACTTGGGAGACTTTTCCATCAATTATCTGCCTATCAGC
Found at i:1648191 original size:20 final size:20
Alignment explanation
Indices: 1648168--1648241 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
1648158 ACAATTCAAA
1648168 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
1648188 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
1648209 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
1648229 GTATCGATACATG
1 GTATCGATACATG
1648242 AAAAAGATGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:1648212 original size:21 final size:21
Alignment explanation
Indices: 1648186--1648261 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1648176 ACATGTTGCA
1648186 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
1648207 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
1648227 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
*
1648248 ATGTTTCGATACAT
1 ATGTATCGATACAT
1648262 TTCTTGGTAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:1648219 original size:41 final size:41
Alignment explanation
Indices: 1648168--1648261 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1648158 ACAATTCAAA
1648168 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1648209 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
*
1648250 GTTTCGATACAT
1 GTATCGATACAT
1648262 TTCTTGGTAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
Found at i:1648318 original size:13 final size:13
Alignment explanation
Indices: 1648300--1648325 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1648290 TACAGCAAGT
1648300 ATGTATCGATACA
1 ATGTATCGATACA
1648313 ATGTATCGATACA
1 ATGTATCGATACA
1648326 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1650558 original size:21 final size:21
Alignment explanation
Indices: 1650525--1650569 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1650515 TTGCAAGTTG
*
1650525 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1650547 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1650567 AAA
1 AAA
1650570 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1652678 original size:52 final size:52
Alignment explanation
Indices: 1652535--1652660 Score: 243
Period size: 52 Copynumber: 2.4 Consensus size: 52
1652525 AATATGAAAT
*
1652535 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCAGGGCAAA
1652587 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCAGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCAGGGCAAA
1652639 TTTGCCTGCATGTATCGATACA
1 TTTGCCTGCATGTATCGATACA
1652661 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCAGGGCAAA
Found at i:1653159 original size:42 final size:42
Alignment explanation
Indices: 1653082--1653242 Score: 112
Period size: 42 Copynumber: 3.8 Consensus size: 42
1653072 AAACTTTTCC
* * * * **
1653082 ATCAATCATCTGCTTGTCGGCTCAGACCCTAGAGACTTGTTT
1 ATCAATCATCTGCTCGTCAGCTTAGACTCGGGAGACTTGTTT
*** *
1653124 ATTTTTCATCTGC-CTGTCAGCTTAGACTCGGGAGACTTTTTT
1 ATCAATCATCTGCTC-GTCAGCTTAGACTCGGGAGACTTGTTT
* * * *
1653166 ATCAATCGTCTGCTCGTTAGCTTAGACTTGGGAGACTT-TTCC
1 ATCAATCATCTGCTCGTCAGCTTAGACTCGGGAGACTTGTT-T
** * *
1653208 ATCAATTGTCTGCCCGTC-GACTTAGCCTCGGGAGA
1 ATCAATCATCTGCTCGTCAG-CTTAGACTCGGGAGA
1653243 TTTTTCCATC
Statistics
Matches: 93, Mismatches: 22, Indels: 8
0.76 0.18 0.07
Matches are distributed among these distances:
41 3 0.03
42 89 0.96
43 1 0.01
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (42 bp):
ATCAATCATCTGCTCGTCAGCTTAGACTCGGGAGACTTGTTT
Found at i:1653248 original size:42 final size:42
Alignment explanation
Indices: 1653132--1653275 Score: 141
Period size: 42 Copynumber: 3.5 Consensus size: 42
1653122 TTATTTTTCA
* * *
1653132 TCTGCCTGTCAGCTTAGACTCGGGAGACTTTTT-TATCAATCG
1 TCTGCCCGTGAGCTTAGACTCGGGAGA-TTTTTCCATCAATCG
* * * * *
1653174 TCTGCTCGTTAGCTTAGACTTGGGAGACTTTTCCATCAATTG
1 TCTGCCCGTGAGCTTAGACTCGGGAGATTTTTCCATCAATCG
*
1653216 TCTGCCCGTCGA-CTTAGCCTCGGGAGATTTTTCCATCAATCG
1 TCTGCCCGT-GAGCTTAGACTCGGGAGATTTTTCCATCAATCG
* * *
1653258 -ATGCCCATCAGCTTAGAC
1 TCTGCCCGTGAGCTTAGAC
1653276 CTGAGAGAAT
Statistics
Matches: 82, Mismatches: 17, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
40 1 0.01
41 16 0.20
42 64 0.78
43 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.33
Consensus pattern (42 bp):
TCTGCCCGTGAGCTTAGACTCGGGAGATTTTTCCATCAATCG
Found at i:1653456 original size:42 final size:42
Alignment explanation
Indices: 1653410--1653492 Score: 94
Period size: 42 Copynumber: 2.0 Consensus size: 42
1653400 TAGATCTGGT
*** *
1653410 AGACTCTTCCATCAATCATCTACTTGTCGGCTTAGACCCGAA
1 AGACTCTTCCATCAATCATCTACCCATCGGCTTAGAACCGAA
* * * *
1653452 AGACTTTTTCGTCAATCGTCTACCCATCGGCTTAGAACCGA
1 AGACTCTTCCATCAATCATCTACCCATCGGCTTAGAACCGA
1653493 GAGGCTTCTT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (42 bp):
AGACTCTTCCATCAATCATCTACCCATCGGCTTAGAACCGAA
Found at i:1653614 original size:43 final size:42
Alignment explanation
Indices: 1653140--1654834 Score: 295
Period size: 43 Copynumber: 39.9 Consensus size: 42
1653130 CATCTGCCTG
* * * *
1653140 TCAGCTTAGACTCGGGAGACTTTTTTATCAATCGTCTGCTCG
1 TCAGCTTAGACTCGAGAGACTTTTTTCTCAATCGTCTGCCCA
* * * * * *
1653182 TTAGCTTAGACTTGGGAGAC-TTTTCCATCAATTGTCTGCCCG
1 TCAGCTTAGACTCGAGAGACTTTTTTC-TCAATCGTCTGCCCA
* * * *
1653224 TC-GACTTAGCCTCGGGAGA-TTTTTCCATCAATCG-ATGCCCA
1 TCAG-CTTAGACTCGAGAGACTTTTTTC-TCAATCGTCTGCCCA
* * * * * * *
1653265 TCAGCTTAGAC-CTGAGAGAATTCCTTTGTTAATCGTCGGCTCG
1 TCAGCTTAGACTC-GAGAGACTT-TTTTCTCAATCGTCTGCCCA
* * * * * * * * *
1653308 TCTGCTCAGACCCGAGAAACTTCCTTTATCAATCGTTTGCTCG
1 TCAGCTTAGACTCGAGAGACTT-TTTTCTCAATCGTCTGCCCA
* ** ** **
1653351 TCGGCTTAGATCTC-AGAGACTTCCTTCGTCAATAATCTGCCTG
1 TCAGCTTAGA-CTCGAGAGACTTTTTTC-TCAATCGTCTGCCCA
* * * * ***
1653394 TCAGCTTAGA-TCTG-GTAGAC-TCTTCCATCAATCATCTACTTG
1 TCAGCTTAGACTC-GAG-AGACTTTTTTC-TCAATCGTCTGCCCA
* * * *
1653436 TCGGCTTAGACCCGAAAGAC-TTTTTCGTCAATCGTCTACCCA
1 TCAGCTTAGACTCGAGAGACTTTTTTC-TCAATCGTCTGCCCA
* * * * *
1653478 TCGGCTTAGAAC-CGAGAGGCTTCTTTTGTCAATCATCTGCCCG
1 TCAGCTTAG-ACTCGAGAGACTT-TTTTCTCAATCGTCTGCCCA
* * * * * * **
1653521 TCGGCTCT-GACCCAAGAAACTTTCTTTGC-CAATTGTCTACCTG
1 TCAGCT-TAGACTCGAGAGACTTT-TTT-CTCAATCGTCTGCCCA
*
1653564 CCAGCTTAGACTCGAGAGACTTCTTTTCTCAATCGTCTGCCCA
1 TCAGCTTAGACTCGAGAGACTT-TTTTCTCAATCGTCTGCCCA
* * * * **
1653607 TTAGCTTAGACTCGTGAGAC-TTTTCCATCAATCGTCTACCTG
1 TCAGCTTAGACTCGAGAGACTTTTTTC-TCAATCGTCTGCCCA
* ** * * *
1653649 T-TGACTTAGGTTTGAGAGACTTTTCTATCAATCGTCTGCCCA
1 TCAG-CTTAGACTCGAGAGACTTTTTTCTCAATCGTCTGCCCA
* * * * * *
1653691 TCAGCTTAGACCCGAGAGAC-TTCTTCATCTAGT-ATCTACCTA
1 TCAGCTTAGACTCGAGAGACTTTTTTC-TC-AATCGTCTGCCCA
* * * *
1653733 TCGGCTTAGACCCGAGAGACTTTGTTTATCAATCGTCTAG-CCG
1 TCAGCTTAGACTCGAGAGACTTT-TTTCTCAATCGTCT-GCCCA
* * * *
1653776 TCAACTTAGACTCGAGAGAC-ATTTTCATCAATCGTCTACCCG
1 TCAGCTTAGACTCGAGAGACTTTTTTC-TCAATCGTCTGCCCA
* * * * *
1653818 TC-GACTAAGACTTGAGAGATTTTCTTTATCAATCGTCTGCCTA
1 TCAG-CTTAGACTCGAGAGACTTT-TTTCTCAATCGTCTGCCCA
* * * *
1653861 TCGGCTTAGACTCTG-GAGACTTCCTTTGTCAATCGTCTGCCCG
1 TCAGCTTAGACTC-GAGAGACTT-TTTTCTCAATCGTCTGCCCA
* * * * * *
1653904 TCAGCGTAGAC-CTAGGAAAC-TTTTCCATCAATCATTTGCCCA
1 TCAGCTTAGACTCGA-GAGACTTTTTTC-TCAATCGTCTGCCCA
* * * * * * **
1653946 TCGGCTCAGACTC-AGGAGACTTCCTTTGTCAATCCTCTACCTG
1 TCAGCTTAGACTCGA-GAGACTT-TTTTCTCAATCGTCTGCCCA
** * * * * *
1653989 TTGGCTTAGACCCGAGAGA-GTTTTCCATCAATAGTCTACCCA
1 TCAGCTTAGACTCGAGAGACTTTTTTC-TCAATCGTCTGCCCA
* * * * *
1654031 TCGGCTTAGACTC-AGGAGACTTCCTTTGTCGATCGTCTGCCCG
1 TCAGCTTAGACTCGA-GAGACTT-TTTTCTCAATCGTCTGCCCA
* * * * ** * *
1654074 TCAACTTAGAC-CTGAGAGGCTTCCTTTATCAATCACCTACCAA
1 TCAGCTTAGACTC-GAGAGACTT-TTTTCTCAATCGTCTGCCCA
* * * * * *
1654117 TCGGCTTAGAC-CTAGGAGACTTCCTTTATCAATCATCTGCCCC
1 TCAGCTTAGACTCGA-GAGACTT-TTTTCTCAATCGTCTGCCCA
* * * *
1654160 TC-GACTTAGACCCTG-GAGACTTTTTTTGTCAATCGTCTACTCA
1 TCAG-CTTAGACTC-GAGAGAC-TTTTTTCTCAATCGTCTGCCCA
* * * * * * *
1654203 TCGGCTTAGAC-CTAGGAGAC-TTTTCCATCAATTGTCTACTCG
1 TCAGCTTAGACTCGA-GAGACTTTTTTC-TCAATCGTCTGCCCA
* * * * * * **
1654245 T-TGACTTAGACTCGGGAGAC-TTTTTCATCCATTGCCTACCTG
1 TCAG-CTTAGACTCGAGAGACTTTTTTC-TCAATCGTCTGCCCA
** * * **
1654287 TTGGCTTAGACCCTG-GAGAC-TTTTTCATCAATCGCCTGCCTG
1 TCAGCTTAGACTC-GAGAGACTTTTTTC-TCAATCGTCTGCCCA
* * * * * * *
1654329 TCAGCTTAGAC-CTAGGAAACTTCCTTTGTCAATCGTCTACTCG
1 TCAGCTTAGACTCGA-GAGACTT-TTTTCTCAATCGTCTGCCCA
* * * * * * *
1654372 TCAGCTCAGAC-CTAAAAGACTTCTTTTATCAATCATATGCCCG
1 TCAGCTTAGACTC-GAGAGACTT-TTTTCTCAATCGTCTGCCCA
* * * * * *
1654415 TCGGTTTAGA-TCTAGAAGACTTTCTTTGTCAATCGTTTGCTCA
1 TCAGCTTAGACTCGAG-AGACTTT-TTTCTCAATCGTCTGCCCA
* * * * * * *
1654458 TCGGCGTAGAC-CTAGGAAAC-TTTTCCATCAATCATCTGCCCG
1 TCAGCTTAGACTCGA-GAGACTTTTTTC-TCAATCGTCTGCCCA
* * * * * * *
1654500 TCGGCTAAGACCCGAGAGACTTTTTCATTTC--TCATCTACCCG
1 TCAGCTTAGACTCGAGAGACTTTTT--TCTCAATCGTCTGCCCA
* * * ***
1654542 TCAGCTTAGACTCGGGAGAC-TTTTTCAACAATCGTCTACTTG
1 TCAGCTTAGACTCGAGAGACTTTTTTC-TCAATCGTCTGCCCA
* * * *
1654584 TTAGCTTAGACTTGAGAGAC-ATTTTCATCAATCGTCTGCCAA
1 TCAGCTTAGACTCGAGAGACTTTTTTC-TCAATCGTCTGCCCA
* * * * * *
1654626 TCGGCTAAGACCCGAGAGACTTTCTTTATCAATCGTCTACCGA
1 TCAGCTTAGACTCGAGAGACTTT-TTTCTCAATCGTCTGCCCA
* * * * * ***
1654669 TCGGCTTAGAC-CTAGGAGACTTCCTTTGTTAATCGTCTGCTTG
1 TCAGCTTAGACTCGA-GAGACTT-TTTTCTCAATCGTCTGCCCA
* * * *
1654712 CCAGTTTAGA-TCCGAGAGAC-TTTTCCATCAATCGTTTGCCCA
1 TCAGCTTAGACT-CGAGAGACTTTTTTC-TCAATCGTCTGCCCA
* * * * * * *
1654754 TC-GATTTAGACCCAAGAGATTTCTTTTGC-CAATCATCTACCCG
1 TCAG-CTTAGACTCGAGAGACTT-TTTT-CTCAATCGTCTGCCCA
* * * *
1654797 TCAGCTCAGACCCGAGTGACTTCTTTTATCAATCGTCT
1 TCAGCTTAGACTCGAGAGACTT-TTTTCTCAATCGTCT
1654835 ACCTGTCGAC
Statistics
Matches: 1214, Mismatches: 337, Indels: 203
0.69 0.19 0.12
Matches are distributed among these distances:
39 1 0.00
40 2 0.00
41 56 0.05
42 529 0.44
43 583 0.48
44 42 0.03
45 1 0.00
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.32
Consensus pattern (42 bp):
TCAGCTTAGACTCGAGAGACTTTTTTCTCAATCGTCTGCCCA
Found at i:1654142 original size:86 final size:84
Alignment explanation
Indices: 1653209--1655491 Score: 555
Period size: 85 Copynumber: 26.8 Consensus size: 84
1653199 GACTTTTCCA
* * * *
1653209 TCAATTGTCTGCCCGTCGACTTAG-CCTCGGGAGA-TTTTTCCATCAATCGA--TGCCCATCAGC
1 TCAATCGTCTGCCCGTCGACTTAGACCT-GAGAGACTTTTT--ATCAATC-ATCTACCCATCGGC
*
1653270 TTAGACCT-GAGAGAATTCCTTTG
62 TTAGACCTAG-GAGACTTCCTTTG
* * * * * * * * * * *
1653293 TTAATCGTCGGCTCGTCTG-CTCAGACCCGAGAAACTTCCTTTATCAATCGTTTGCTCGTCGGCT
1 TCAATCGTCTGCCCGTC-GACTTAGACCTGAGAGACTT--TTTATCAATCATCTACCCATCGGCT
* *
1653357 TAGATCTCA-GAGACTTCCTTCG
63 TAGACCT-AGGAGACTTCCTTTG
** * * ** ***
1653379 TCAATAATCTGCCTGTC-AGCTTAGATCTG-GTAGACTCTTCCATCAATCATCTACTTGTCGGCT
1 TCAATCGTCTGCCCGTCGA-CTTAGACCTGAG-AGACT-TTTTATCAATCATCTACCCATCGGCT
* *
1653442 TAGACC-CGAAAGACTT--TTTCG
63 TAGACCTAG-GAGACTTCCTTT-G
* * * * * * *
1653463 TCAATCGTCTACCCATCGGCTTAGAACC-GAGAGGCTTCTTTTGTCAATCATCTGCCCGTCGGCT
1 TCAATCGTCTGCCCGTCGACTTAG-ACCTGAGAGAC-T-TTTTATCAATCATCTACCCATCGGCT
* * * *
1653527 CT-GACCCAAGAAACTTTCTTTG
63 -TAGACCTAGGAGACTTCCTTTG
* * * * * * * * **
1653549 CCAATTGTCTACCTG-CCAGCTTAGA-CTCGAGAGACTTCTTTTCTCAATCGTCTGCCCATTAGC
1 TCAATCGTCTGCCCGTCGA-CTTAGACCT-GAGAGAC-T-TTTTATCAATCATCTACCCATCGGC
* **
1653612 TTAGA-CTCGTGAGACTT--TTCCA
62 TTAGACCTAG-GAGACTTCCTT-TG
* * * *** * * *
1653634 TCAATCGTCTACCTGTTGACTTAGGTTTGAGAGACTTTTCTATCAATCGTCTGCCCATCAGCTTA
1 TCAATCGTCTGCCCGTCGACTTAGACCTGAGAGACTTTT-TATCAATCATCTACCCATCGGCTTA
* **
1653699 GACC-CGAGAGACTT-CTTCA
65 GACCTAG-GAGACTTCCTTTG
* * * ** * * * * * **
1653718 TCTAGT-ATCTACCTATCGGCTTAGACCCGAGAGACTTTGTTTATCAATCGTCTAGCCGTCAACT
1 TC-AATCGTCTGCCCGTCGACTTAGACCTGAGAGAC-TT-TTTATCAATCATCTACCCATCGGCT
* **
1653782 TAGA-CTCGAGAGACATT--TTCA
63 TAGACCTAG-GAGAC-TTCCTTTG
* * * * * * *
1653803 TCAATCGTCTACCCGTCGACTAAGACTTGAGAGATTTTCTTTATCAATCGTCTGCCTATCGGCTT
1 TCAATCGTCTGCCCGTCGACTTAGACCTGAGAGA-CTT-TTTATCAATCATCTACCCATCGGCTT
1653868 AGACTCT-GGAGACTTCCTTTG
64 AGAC-CTAGGAGACTTCCTTTG
* * * * *
1653889 TCAATCGTCTGCCCGTC-AGCGTAGACCT-AGGAAACTTTTCCATCAATCATTTGCCCATCGGCT
1 TCAATCGTCTGCCCGTCGA-CTTAGACCTGA-GAGACTTTT-TATCAATCATCTACCCATCGGCT
*
1653952 CAGA-CTCAGGAGACTTCCTTTG
63 TAGACCT-AGGAGACTTCCTTTG
* * * * * * * *
1653974 TCAATCCTCTACCTGTTGGCTTAGACCCGAGAGAGTTTTCCATCAAT-AGTCTACCCATCGGCTT
1 TCAATCGTCTGCCCGTCGACTTAGACCTGAGAGACTTTT-TATCAATCA-TCTACCCATCGGCTT
1654038 AGA-CTCAGGAGACTTCCTTTG
64 AGACCT-AGGAGACTTCCTTTG
* * * * *
1654059 TCGATCGTCTGCCCGTCAACTTAGACCTGAGAGGCTTCCTTTATCAATCACCTACCAATCGGCTT
1 TCAATCGTCTGCCCGTCGACTTAGACCTGAGAGACTT--TTTATCAATCATCTACCCATCGGCTT
*
1654124 AGACCTAGGAGACTTCCTTTA
64 AGACCTAGGAGACTTCCTTTG
* * * * *
1654145 TCAATCATCTGCCCCTCGACTTAGACCCTG-GAGACTTTTTTTGTCAATCGTCTACTCATCGGCT
1 TCAATCGTCTGCCCGTCGACTTAGA-CCTGAGAGAC--TTTTTATCAATCATCTACCCATCGGCT
**
1654209 TAGACCTAGGAGACTT--TTCCA
63 TAGACCTAGGAGACTTCCTT-TG
* * * * * * *** ** *
1654230 TCAATTGTCTACTCGTTGACTTAGA-CTCGGGAGACTTTTTCATCCATTGCCTACCTGTTGGCTT
1 TCAATCGTCTGCCCGTCGACTTAGACCT-GAGAGACTTTTT-ATCAATCATCTACCCATCGGCTT
*
1654294 AGACCCT-GGAGACTT--TTTCA
64 AGA-CCTAGGAGACTTCCTTT-G
* * * * * * * *
1654314 TCAATCGCCTGCCTGTC-AGCTTAGACCT-AGGAAACTTCCTTTGTCAATCGTCTACTCGTCAGC
1 TCAATCGTCTGCCCGTCGA-CTTAGACCTGA-GAGACTT--TTTATCAATCATCTACCCATCGGC
* ** * *
1654377 TCAGACCTAAAAGACTTCTTTTA
62 TTAGACCTAGGAGACTTCCTTTG
* * ** * * * * * * *
1654400 TCAATCATATGCCCGTCGGTTTAGATCT-AGAAGACTTTCTTTGTCAATCGTTTGCTCATCGGCG
1 TCAATCGTCTGCCCGTCGACTTAGACCTGAG-AGAC-TT-TTTATCAATCATCTACCCATCGGCT
* **
1654464 TAGACCTAGGAAACTT--TTCCA
63 TAGACCTAGGAGACTTCCTT-TG
* * * * *** * *
1654485 TCAATCATCTGCCCGTCGGCTAAGACCCGAGAGACTTTTTCATTTCTCATCTACCCGTCAGCTTA
1 TCAATCGTCTGCCCGTCGACTTAGACCTGAGAGACTTTTT-ATCAATCATCTACCCATCGGCTTA
* *
1654550 GA-CTCGGGAGACTT--TTTCA
65 GACCT-AGGAGACTTCCTTT-G
* * ** * * * * * * *
1654569 ACAATCGTCTACTTGT-TAGCTTAGACTTGAGAGACATTTTCATCAATCGTCTGCCAATCGGCTA
1 TCAATCGTCTGCCCGTCGA-CTTAGACCTGAGAGAC-TTTTTATCAATCATCTACCCATCGGCTT
* * *
1654633 AGACC-CGAGAGACTTTCTTTA
64 AGACCTAG-GAGACTTCCTTTG
* * * * * * **** * *
1654654 TCAATCGTCT-ACCGATCGGCTTAGACCT-AGGAGACTTCCTTTGTTAATCGTCTGCTTGCCAGT
1 TCAATCGTCTGCCCG-TCGACTTAGACCTGA-GAGACTT--TTTATCAATCATCTACCCATCGGC
* **
1654717 TTAGATCCGA-GAGACTT--TTCCA
62 TTAGA-CCTAGGAGACTTCCTT-TG
* * * ** * * *
1654739 TCAATCGTTTGCCCATCGATTTAGACCCAAGAGA-TTTCTTTTGCCAATCATCTACCCGTCAGCT
1 TCAATCGTCTGCCCGTCGACTTAGACCTGAGAGACTTT-TTAT--CAATCATCTACCCATCGGCT
* * * * *
1654803 CAGACC-CGAGTGACTTCTTTTA
63 TAGACCTAG-GAGACTTCCTTTG
* * * * * *
1654825 TCAATCGTCTACCTGTCGACTTAGACCT-AGGAGATTTCCTTTGTCAATCATCTCCCCGTCGGCT
1 TCAATCGTCTGCCCGTCGACTTAGACCTGA-GAGACTT--TTTATCAATCATCTACCCATCGGCT
* *
1654889 CAGACCT-GAGAAACTTCCTTTG
63 TAGACCTAG-GAGACTTCCTTTG
* * * ** * * * * * * * *
1654911 CCAATCATTTTTCTGTCGGCATAGATCCTGA-AAACTACTTTTCTCAATCATCTGCCCGTCAGCT
1 TCAATCGTCTGCCCGTCGACTTAGA-CCTGAGAGACT--TTTTATCAATCATCTACCCATCGGCT
* *
1654975 TA-AACTCAAGAGACTTCCTTTG
63 TAGACCT-AGGAGACTTCCTTTG
* * * * * * * *
1654997 TCAATCGTTTGCCCGACGA-TGTAGACCTGGGAAACTTTTCCATCAATCATCTGCCCGTCAGCTT
1 TCAATCGTCTGCCCGTCGACT-TAGACCTGAGAGACTTTT-TATCAATCATCTACCCATCGGCTT
* *
1655061 AGA-CTCGAGAGACTTCTTTTG
64 AGACCTAG-GAGACTTCCTTTG
** * ** * * * * *
1655082 TCAATTATCTTCTTGTTGGCTTAGACCTGAGAGAGTTTTCCATCAAT-AGTCTACCTATCGGCTT
1 TCAATCGTCTGCCCGTCGACTTAGACCTGAGAGACTTTT-TATCAATCA-TCTACCCATCGGCTT
*
1655146 AGA-CTCAAGAGACTTCCTTTG
64 AGACCT-AGGAGACTTCCTTTG
* * * * * * *
1655167 TCAATCGTCTGCCCTTCGGCTTAGACCTAAGAGGCTTTCTTTGTCAATCACCTACCCGTCGGCTT
1 TCAATCGTCTGCCCGTCGACTTAGACCTGAGAGAC-TT-TTTATCAATCATCTACCCATCGGCTT
** * *
1655232 AGATTTGGGAGACTTCCTTTA
64 AGACCTAGGAGACTTCCTTTG
* * * * * *
1655253 TCAATCGTCTGCCCCTC-AGCTTAGACCCGGGAGACTTCTTTTCTCAATCATCAACCCATTGGCT
1 TCAATCGTCTGCCCGTCGA-CTTAGACCTGAGAGAC-T-TTTTATCAATCATCTACCCATCGGCT
* * **
1655317 TAGACTTGGGAGACTT--TTCCA
63 TAGACCTAGGAGACTTCCTT-TG
* * * * * * ** **
1655338 TCAATTGTCTACCCGTTGACTTAGACTTGGGAGACTTTTTCATCCATCGCCTACCTGTCGGCTTA
1 TCAATCGTCTGCCCGTCGACTTAGACCTGAGAGACTTTTT-ATCAATCATCTACCCATCGGCTTA
** *
1655403 GACCCGGGAGACTT--TTTCA
65 GACCTAGGAGACTTCCTTT-G
* * * * * * *
1655422 TCAATCG-CTTGCCCGTCAAATTAGACCTGGGAAACTTCCTTTGTCAATCATCTACCCATCAGTT
1 TCAATCGTC-TGCCCGTCGACTTAGACCTGAGAGACTT--TTTATCAATCATCTACCCATCGGCT
1655486 TAGACC
63 TAGACC
1655492 ACGAAGATTT
Statistics
Matches: 1647, Mismatches: 414, Indels: 275
0.71 0.18 0.12
Matches are distributed among these distances:
82 1 0.00
83 29 0.02
84 325 0.20
85 672 0.41
86 575 0.35
87 37 0.02
88 7 0.00
89 1 0.00
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (84 bp):
TCAATCGTCTGCCCGTCGACTTAGACCTGAGAGACTTTTTATCAATCATCTACCCATCGGCTTAG
ACCTAGGAGACTTCCTTTG
Found at i:1654745 original size:128 final size:127
Alignment explanation
Indices: 1653365--1654807 Score: 327
Period size: 128 Copynumber: 11.3 Consensus size: 127
1653355 CTTAGATCTC
* ** * * * * * * * *
1653365 AGAGACTTCCTTCGTCAATAATCTGCCTGTCAGCTTAGA-TCTGGTAGACTCTTCCATCAATCAT
1 AGAGACTTTCTTTATCAATCATCTACCCGTCAGCTTAGACTCAGG-AGACTTTTTCAACAATCGT
* * * * * * * * *
1653429 CTACTTGTCGGCTTAGACCCGAAAGACTTTTTCGTCAATCGTCTACCCATCGGCTTAGAACCG
65 CTACTTGCCAGCTTAGACTCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTAAGACCCG
* * * * * * * *** *
1653492 AGAGGC-TTCTTTTGTCAATCATCTGCCCGTCGGCTCT-GACCCAAGAAACTTTCTTTGCCAATT
1 AGAGACTTTC-TTTATCAATCATCTACCCGTCAGCT-TAGACTCAGGAGACTTT-TTCAACAATC
* * ** * *
1653555 GTCTACCTGCCAGCTTAGACTCGAGAGACTTCTTTTC-TCAATCGTCTGCCCATTAGCTTAGACT
63 GTCTACTTGCCAGCTTAGACTCGAGAGAC-T-TTTCCATCAATCGTCTGCCCATCGGCTAAGACC
1653619 CG
126 CG
* ** * * * * ** *
1653621 TGAGACTTT-TCCATCAATCGTCTACCTGT-TGACTTAG-GTTTGAGAGAC-TTTTCTATCAATC
1 AGAGACTTTCTTTATCAATCATCTACCCGTCAG-CTTAGACTCAG-GAGACTTTTTC-AACAATC
* **** * * * * * *
1653682 GTCTGCCCATCAGCTTAGACCCGAGAGACTTCTT-CATCTAGT-ATCTACCTATCGGCTTAGACC
63 GTCTACTTGCCAGCTTAGACTCGAGAGACTT-TTCCATC-AATCGTCTGCCCATCGGCTAAGACC
1653745 CG
126 CG
* * * * * *
1653747 AGAGACTTTGTTTATCAATCGTCTAGCCGTCAACTTAGACTC-GAGAGACATTTTCATCAATCGT
1 AGAGACTTTCTTTATCAATCATCTACCCGTCAGCTTAGACTCAG-GAGACTTTTTCAACAATCGT
** * * * * * *
1653811 CTACCCGTC-GACTAAGACTTGAGAGA-TTTTCTTTATCAATCGTCTGCCTATCGGCTTAGACTC
65 CTACTTGCCAG-CTTAGACTCGAGAGACTTTTC--CATCAATCGTCTGCCCATCGGCTAAGAC-C
*
1653874 TG
126 CG
* * * * * * * * *
1653876 -GAGACTTCCTTTGTCAATCGTCTGCCCGTCAGCGTAGAC-CTAGGAAACTTTTCCATCAATCAT
1 AGAGACTTTCTTTATCAATCATCTACCCGTCAGCTTAGACTC-AGGAGACTTTTTCAACAATCGT
* * **** * * ** * * ** * *
1653939 TTGCCCATCGGCTCAGACTC-AGGAGACTTCCTT-TGTCAATCCTCTACCTGTTGGCTTAGACCC
65 CTACTTGCCAGCTTAGACTCGA-GAGACTT--TTCCATCAATCGTCTGCCCATCGGCTAAGACCC
1654002 G
127 G
* ** * * ** *
1654003 AGAGAGTTT-TCCATCAAT-AGTCTACCCATCGGCTTAGACTCAGGAGACTTCCTTT-GTCGATC
1 AGAGACTTTCTTTATCAATCA-TCTACCCGTCAGCTTAGACTCAGGAGACTT--TTTCAACAATC
* ** * * * * ** * * *
1654065 GTCTGCCCGTCAACTTAGAC-CTGAGAGGCTTCCTT-TATCAATCACCTACCAATCGGCTTAGA-
63 GTCTACTTGCCAGCTTAGACTC-GAGAGACTT--TTCCATCAATCGTCTGCCCATCGGCTAAGAC
*
1654127 CCT
125 CCG
* * * * * ***
1654130 AGGAGACTTCCTTTATCAATCATCTGCCCCTC-GACTTAGACCCTGGAGACTTTTTTTGTCAATC
1 A-GAGACTTTCTTTATCAATCATCTACCCGTCAG-CTTAGACTCAGGAGAC-TTTTTCAACAATC
*** * * * * * * * * * *
1654194 GTCTACTCATCGGCTTAGAC-CTAGGAGACTTTTCCATCAATTGTCTACTCGTTGACTTAGACTC
63 GTCTACTTGCCAGCTTAGACTCGA-GAGACTTTTCCATCAATCGTCTGCCCATCGGCTAAGACCC
1654258 G
127 G
* * * *** * ** * * * *
1654259 GGAGACTTT-TTCATCCATTGCCTACCTGTTGGCTTAGACCCTGGAGACTTTTTCATCAATCGCC
1 AGAGACTTTCTTTATCAATCATCTACCCGTCAGCTTAGACTCAGGAGACTTTTTCAACAATCGTC
* * * * * ** * * * * * **
1654323 TGCCTGTCAGCTTAGAC-CTAGGAAACTTCCTT-TGTCAATCGTCTACTCGTCAGCTCAGACCTA
66 TACTTGCCAGCTTAGACTCGA-GAGACTT--TTCCATCAATCGTCTGCCCATCGGCTAAGACCCG
* * * * * * ***
1654386 AAAGAC-TTCTTTTATCAATCATATGCCCGTCGGTTTAGA-TCTAGAAGACTTTCTTTGTCAATC
1 AGAGACTTTC-TTTATCAATCATCTACCCGTCAGCTTAGACTC-AGGAGACTTT-TTCAACAATC
* * *** * * * * * *
1654449 GTTTGCTCATCGGCGTAGAC-CTAGGAAACTTTTCCATCAATCATCTGCCCGTCGGCTAAGACCC
63 GTCTACTTGCCAGCTTAGACTCGA-GAGACTTTTCCATCAATCGTCTGCCCATCGGCTAAGACCC
1654513 G
127 G
* *** *
1654514 AGAGACTTT-TTCATTTCTCATCTACCCGTCAGCTTAGACTCGGGAGACTTTTTCAACAATCGTC
1 AGAGACTTTCTTTATCAATCATCTACCCGTCAGCTTAGACTCAGGAGACTTTTTCAACAATCGTC
** * *
1654578 TACTTGTTAGCTTAGACTTGAGAGACATTTT-CATCAATCGTCTGCCAATCGGCTAAGACCCG
66 TACTTGCCAGCTTAGACTCGAGAGAC-TTTTCCATCAATCGTCTGCCCATCGGCTAAGACCCG
* * ***
1654640 AGAGACTTTCTTTATCAATCGTCTA-CCGATCGGCTTAGAC-CTAGGAGACTTCCTTT-GTTAAT
1 AGAGACTTTCTTTATCAATCATCTACCCG-TCAGCTTAGACTC-AGGAGACTT--TTTCAACAAT
* * * ** *
1654702 CGTCTGCTTGCCAGTTTAGA-TCCGAGAGACTTTTCCATCAATCGTTTGCCCATCGATTTAGACC
62 CGTCTACTTGCCAGCTTAGACT-CGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTAAGACC
*
1654766 CA
126 CG
*
1654768 AGAGA-TTTCTTT-TGCCAATCATCTACCCGTCAGCTCAGAC
1 AGAGACTTTCTTTAT--CAATCATCTACCCGTCAGCTTAGAC
1654808 CCGAGTGACT
Statistics
Matches: 979, Mismatches: 268, Indels: 137
0.71 0.19 0.10
Matches are distributed among these distances:
125 4 0.00
126 140 0.14
127 294 0.30
128 393 0.40
129 136 0.14
130 10 0.01
131 2 0.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.32
Consensus pattern (127 bp):
AGAGACTTTCTTTATCAATCATCTACCCGTCAGCTTAGACTCAGGAGACTTTTTCAACAATCGTC
TACTTGCCAGCTTAGACTCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTAAGACCCG
Found at i:1654851 original size:43 final size:43
Alignment explanation
Indices: 1653420--1673749 Score: 942
Period size: 42 Copynumber: 480.0 Consensus size: 43
1653410 AGACTCTTCC
* ** * * *
1653420 ATCAATCATCTACTTGTCGGCTTAGACCCGAAAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1653462 GTCAATCGTCTACCCATCGGCTTAGAACCGAGAGGCTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1653505 GTCAATCATCTGCCCGTCGGCTCT-GACCCAAGAAACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACT-TAGACCCGAGAGACTTCT-TTT
** * * * *
1653548 GCCAATTGTCTACCTG-CCAGCTTAGACTCGAGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1653591 CTCAATCGTCTGCCCAT-TAGCTTAGACTCGTGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * **** *
1653633 ATCAATCGTCTACCTGTTGACTTAGGTTTGAGAGACTT-TTCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * *
1653675 ATCAATCGTCTGCCCATC-AGCTTAGACCCGAGAGACTTC-TTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * ** *
1653717 ATCTAGT-ATCTACCTATCGGCTTAGACCCGAGAGACTT-TGTTT
1 ATC-AATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * * *
1653760 ATCAATCGTCTAGCCGTCAACTTAGACTCGAGAGACAT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** *
1653802 ATCAATCGTCTACCCGTCGACTAAGACTTGAGAGA-TTTTCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* ** * * *
1653845 ATCAATCGTCTGCCTATCGGCTTAGACTCTG-GAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGAC-CCGAGAGACTTCTTTT
* * * * * **
1653888 GTCAATCGTCTGCCCGTC-AGCGTAGA-CCTAGGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * * * * * *
1653930 ATCAATCATTTGCCCATCGGCTCAGACTC-AGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * * **
1653973 GTCAATCCTCTACCTGTTGGCTTAGACCCGAGAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1654015 ATCAATAGTCTACCCATCGGCTTAGACTC-AGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * * *
1654058 GTCGATCGTCTGCCCGTCAACTTAGACCTGAGAGGCTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** ** * * *
1654101 ATCAATCACCTACCAATCGGCTTAGA-CCTAGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * *
1654144 ATCAATCATCTGCCCCTCGACTTAGACCCTG-GAGACTTTTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCC-GAGAGACTTCTTTT
* * * * * **
1654187 GTCAATCGTCTACTCATCGGCTTAGA-CCTAGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * *
1654229 ATCAATTGTCTACTCGTTGACTTAGACTCGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1654271 ATCCATTGCCTACCTGTTGGCTTAGACCCTG-GAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCC-GAGAGACTTCTTTT
* * * * * *
1654313 ATCAATCGCCTGCCTGTC-AGCTTAGA-CCTAGGAAACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * ** *
1654356 GTCAATCGTCTACTCGTC-AGCTCAGACCTAAAAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * ** * *
1654399 ATCAATCATATGCCCGTCGGTTTAGA-TCTAGAAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCT-TTT
* * * * * * * * * **
1654442 GTCAATCGTTTGCTCATCGGCGTAGA-CCTAGGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * *
1654484 ATCAATCATCTGCCCGTCGGCTAAGACCCGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
*** * * * *
1654526 ATTTCTCATCTACCCGTC-AGCTTAGACTCGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* ** * ** * *
1654568 AACAATCGTCTACTTGT-TAGCTTAGACTTGAGAGACAT-TTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* ** * *
1654610 ATCAATCGTCTGCCAATCGGCTAAGACCCGAGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * *
1654653 ATCAATCGTCTA-CCGATCGGCTTAGA-CCTAGGAGACTTCCTTT
1 ATCAATCGTCTACCCG-TCGACTTAGACCCGA-GAGACTTCTTTT
* * * ** * * * **
1654696 GTTAATCGTCTGCTTG-CCAGTTTAGATCCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * *
1654738 ATCAATCGTTTGCCCATCGATTTAGACCCAAGAGATTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * *
1654781 GCCAATCATCTACCCGTC-AGCTCAGACCCGAGTGACTTCTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * *
1654824 ATCAATCGTCTACCTGTCGACTTAGA-CCTAGGAGATTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * * * *
1654867 GTCAATCATCTCCCCGTCGGCTCAGACCTGAGAAACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * ** * * * * * *
1654910 GCCAATCATTTTTCTGTCGGCATAGATCCTGA-AAACTACTTTT
1 ATCAATCGTCTACCCGTCGACTTAGA-CCCGAGAGACTTCTTTT
* * * * * * *
1654953 CTCAATCATCTGCCCGTC-AGCTTAAACTCAAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * * **
1654996 GTCAATCGTTTGCCCGACGA-TGTAGACCTGGGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGACT-TAGACCCGAGAGACTTCTTTT
* * *
1655038 ATCAATCATCTGCCCGTC-AGCTTAGACTCGAGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* ** * ** * * * * **
1655081 GTCAATTATCTTCTTGTTGGCTTAGACCTGAGAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * * *
1655123 ATCAATAGTCTACCTATCGGCTTAGACTCAAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * ** *
1655166 GTCAATCGTCTGCCCTTCGGCTTAGACCTAAGAGGCTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* ** * *** * *
1655209 GTCAATCACCTACCCGTCGGCTTAGATTTGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * *
1655252 ATCAATCGTCTGCCCCTC-AGCTTAGACCCGGGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * ** * **
1655295 CTCAATCATCAACCCATTGGCTTAGACTTGGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * *
1655337 ATCAATTGTCTACCCGTTGACTTAGACTTGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1655379 ATCCATCGCCTACCTGTCGGCTTAGACCCGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1655421 ATCAATCG-CTTGCCCGTCAAATTAGACCTGGGAAACTTCCTTT
1 ATCAATCGTC-TACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1655464 GTCAATCATCTACCCATC-AGTTTAGACCACGA-AGATTTCTTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACC-CGAGAGACTTCTTTT
* * * * * * * *
1655507 ATCAATCATGTGCTCGTCGGCTTAGA-TCTAGAAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* * * * * * * ** * * **
1655550 GTCAATCATTTGCTCGTTG-GTGTAGACTTGGGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGACT-TAGACCCGAGAGACTTCTTTT
* * * * *
1655592 ATCAATCATCTGCCTATTGGCTCAGACTCGAGAGACCCCCGAGAGACTT-TTTC
1 ATCAATCGTCTACC----CG-TC-GACT---TAGA--CCCGAGAGACTTCTTTT
** * * * *
1655645 ATCAATCGTCTACTTGT-TAGCTT-GACTCGAGAGACAT-TTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* *
1655686 ATCAATCGTCTGCCCGTCG-GTTAAGACCCGAGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTT-AGACCCGAGAGACTTCT-TTT
** * * * * * *
1655729 ATCAATTATCTGCCCATCGACTAAGA-CCAAGGAGACTTC-CTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * ** * * * * *
1655771 AGTTAATCATCTGCCTATTGATTTAGATCCGAAAGACTT-TTTC
1 A-TCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * *
1655814 ATCAATCATCTGCCTATCGATTTAGACCTCG-GAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACC-CGAGAGACTTCTTTT
** * ** * *
1655857 GCCAATCATCTACCCGTC-AGCTCGGACCCGAGTA-ATTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAG-AGACTTCTTTT
* * * ** * ** * * *
1655900 GTTAATCATCTACTTGTCGACCTAGACTTGGGAGGCTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * * * * *
1655943 GTCAATTATCTGCCCGTAGGCTCAGACCTGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * * *
1655985 ATCAATTGTCTACCTATCAACTTAGGCTCGGGAGA--T-TTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1656025 ATCAATCATCTGCCCGTGGGCTTAGACCCGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * * * *
1656067 ATCCCTTATCTACTGTTTACCTATCAACTTAGACTC-AAAGACTT-GTTC
1 AT--C--A-AT-C-GTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * *
1656115 ATCAATCGTCTGCCCATCGGCTTAGACCC-AGGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCT-TTT
* * * * * *
1656158 ATCAATCGTCTGCCCGTTGGCTTAGTCCCAAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1656201 ATCAATCATCGACCCATC-AGCTTAGACTCGGGAGACTTC-TTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* ** ** * * ** * * *
1656243 ATCCATTATCTACCTAT-TAGCTTAGTCTTGGGAGGCATCTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * * *
1656286 ATCAAGCCTCTGCCCAT-TAGCTTAAATCCGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * ** ** * **
1656328 GTCAATCATCTGCCCGTCG-CCAAGACATG-GAAGACAT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* * ** * * * * *
1656369 ATCAATTGTCTGCCTATC-AGCTTAAAGCTGGGAGACTT-TTCCAT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTT--TT
** * * * * * *
1656413 AT-TTTC-TCTGCCCGTTGGCCTAGACCCGAGAGATTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1656454 ATCATTCGCCTGCCCGTC-AGCTTAGACCC-AGGAGACATCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * * * *
1656497 ATCAATCATTTTCCTGTTGACTTAGACCCGAGAGACTTTTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * **
1656540 GTCAATCGTCTGCCCATCGGCTTAGA-CCTAGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * **
1656582 AACAATCATCTACCCATTGACTTAGACTCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * **
1656624 ATCAATCGCCTACCCGTCGGCTTAGACCATGGGATA-TT-TCCT
1 ATCAATCGTCTACCCGTCGACTTAGACC-CGAGAGACTTCTTTT
* * * * *** * * *
1656666 -TCAATCGTTTGCCTGTCGGCTTAGATTAGGGAAACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1656708 ATCAATCATCTACCCATGGGCTTAGACTCGAGAAACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * ** * * * **
1656751 GCCAATCGTAT-GCCGTC-AGCTTAGATTCAATAGAC-ACTTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * **
1656792 ATCAATCATCTACCTGTCGACTTAGACCCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** ** *
1656834 ATCAATCGTTTACCCTTCGGTTTAGACCTAAGAGGCTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * * * * ** *
1656877 GTCAATCATTTGCCCATCGACTTAAACTTGAGAGACTTTTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1656920 GTCAATTGTTTGCCTGTCGACTTAGACCCGGGAGGCTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * ** **
1656963 CTCAATCGTCTACCCGTCGGCTAAGACCAAAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * * **
1657005 ATCAATCGTCTACCTATCGACTTAGGCTCGAGGGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1657047 ATTAATCGTTTGCCCATTGGCTTAGACCCGAGAGACTTC-TTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * * * * *
1657089 ATTC-ATTATTTGCCTGTCGGCTTAAACCTGAGAGACTT-TGTTT
1 A-TCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * **
1657132 GTCAATCATCTACCCGTCGGCTTAGATTCGAGAGA-TT-TTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1657173 CATCAATCATCTACCCATTGGCTTAGATCCGGGAGAC--CTTTCC
1 -ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* * *
1657216 ATCAATTGTCTACCCGTC-AGCTTAGACACG-GAGACTT-TTCT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1657257 ATCAATTGTCTACCCATC-AGCTTAGACCTGAAAAAGTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * ** * *
1657299 ATCAATCATCTGCCCCTC-AGCTTAGACCTAAAAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * * *
1657342 GTCAATCGTTTGCCTGTCGACTTAGTCCTGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1657385 ATCAATCGT-TGGCCCATTGACTTAGACTCGGGAGACTTC-TTC
1 ATCAATCGTCT-ACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * *
1657427 ATCCATTGTCTGCCCAT-TAGCTTAGTCCTGGGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCT-TTT
* * * * ** * * ** * *
1657470 ATCAACCCTTTGCCTATTGGCTTAGACTAGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1657512 ATCAATCATCTGCCCATCGGCTTA-AACCGGGAAGA--TCTTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTT-T
* ** *** **
1657554 ATCAATTGTCTACTTGTC-AGCTTAGA-GTTAGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * * *
1657596 ATCAATCATCCACCCATCGGCTTAGACCC-AGGACACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCT-TTT
* * * *
1657639 ATTAATCGCCTACCTGTCGACTTAGACTC-AGGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* ** * * * * * *
1657682 ATCGATCACCTGCCCATCGGCTTAGACTCGAGTGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * * **
1657725 GTCAATCGTTTACTTGTCGGCTTAGA-TCTAGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * * *
1657767 ATCAATCGTTTGCCCATTGATTTAGACCTGAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * ** * * * * *
1657810 GTCAGTCATCTGCTTGTCGGCTCAGGCCCAAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * ** * * *
1657853 ACCAATCGTTTGCTTGTCAACTTAGA-TCTAGGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* ** * * *
1657896 CTCAATCGTCTACCTATTGGCTTAGACCCTG-GAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCC-GAGAGACTTCTTTT
* * * * * *
1657939 GTCAATCATCTACTCGTCGGCTCAAACCCGAGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
** ** * * *
1657982 GCCAATCGTCTACCTATGGGCTTAGAACC-AGGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * ** * * **
1658025 TTCAA-CTGCCTGCCCATC-AGTTTAGACTTGGGAGACAT-TTCC
1 ATCAATC-GTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
** * * *
1658067 ATCAATCGTCTACCTATCGACTTTGGCTCGAGAGA----TTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1658106 GTCAATCATCTACCTGTC-AGTTTAGACTCGAGAGACTTC-TTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* *** * * * * * *
1658148 ATCCATTACCTACCTGTTGGCTTAGACCCAAGAGACGTCATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** ** * *
1658191 GTCAATCGTCTACCTGTCGGTTTAGACTTGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * ** * *
1658233 AACAATCGTTTGCCTATC-AGCTTATACCC-AGGAGAC--CTTTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTT-T
* * * * ** *
1658275 ATCAATCATTTGCCCATCGGGTTAGACCCGGGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * ** * *
1658318 ATCAATCGTCTGCCTGTCGGGTT--A----A-A-CCTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * *
1658352 ATCAATCGTTTTCTCATTGGCCTAGA-CCTAGGAGAC--CTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * *
1658393 CATTAATCGTCTGCCCATTGGCTTAGACCCGAGAGACTTCCTTT
1 -ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1658437 ATTAATCATCTGCCCTTCGGCTTAGACCTGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * * *
1658479 ATCAGTTGTCTGCCTGTTGGCTTAGA-CCTAGGAGATTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * **
1658522 ATCAATCGTCTACCTGTCAACTTAGACCCGAGAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1658564 ATCAATAGTCTACCCATTGGCTTAGACTC-AGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * * **
1658607 GTTAATCATCTA-CCGATAGACTCAGAACTAAGAGACTTTCTTTGT
1 ATCAATCGTCTACCCG-TCGACTTAGACCCGAGAGAC-TTCTTT-T
* * ** * * *
1658652 -T-AATCATCTGCCTATCAACTTAGACCCGGGAGAC-T-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * ** **
1658691 CCCTAATCGTCTACCTGTCGACTTAG-GCTTAGGAGACTT-TTCC
1 ATC-AATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * ** *
1658734 ATCAATCATCTGCCCGTCGGCTTAGACCTAAAAGACTTC-TTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * ** * * * *
1658776 ATCCATTATTTGTCTG-CCAGCTTAGACTCG-GAAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAG-AGACTTCTTTT
* * * * * * *
1658819 GTCAATCATCTACACGT-TAGCTTAGACTCGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * ** * *
1658861 ATTAATCGTTTATCCGTCGGTTTAGA-CCTATGAGAC--CTTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTT-T
* * * **
1658903 ATCAATCGTCTACCCGTCAACTTAGACTCG-GAGACTT-GTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1658944 ATCAATCGTCTGCCCATC-AGCTTAG-GCCTAGAAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAG-AGACTTCTTTT
* * * * * * *
1658987 GTTAATCGTCTGCCCGTTGGCTTAGTCCCGAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1659030 ATCAATCATC-AGCC--C-A-TTTG-CTC-A-A-ACTTC-TTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * ** * * *
1659063 ATCCATTGTCTACTCGT-TAGCTTAGTCTTGGGAGGCTTCGTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * * * * *
1659106 ATCAACCCTTTGCCCATCGGCTTTGACCTGAAAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1659148 ATCAATCATCTGCCCATCGGCTTAGACTCGGGAGAC--CTTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* * * * * * * **
1659190 ATGAATTGTCTGCCTGTCGACTTAGAGCCGGGAGTCTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * * *
1659232 ATCTTTTGTCTGCCCGTC-AGCTTAGA-CCTAGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * * * * *
1659275 ATTAATCATTTACCCATCGGCTTAGACTCGGGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * ** * **
1659318 GTCAATCGTCTGCCCGTCGGCTTTGA-CTTAGGAGCCTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* ** * * ** **
1659360 ATCATTTATCTACCCATTGACTTAGA-CTAAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1659401 ATCAATTGCCTGCCCATCGACTTAGACCCGGGAGACTT-TTCCTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTT--TT
* * * * *
1659445 -T-AATTGTTTGCCCG-CCAGCTTAGACCCGAGAAACTTCTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * *
1659486 GTCAATCGTCTACCCATCAACTCAGACCCGGGAGACTTCATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * ** * **
1659529 GCCAATCGTCTTCCCGTC-AGCTTAGATTC-AGTATAC-TCTTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAG-AGACTTCTTTT
* * * * *
1659571 ATCAATCATCTGCCTGTCGGCTTATACCCGAGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * ** * **
1659614 CTCAATCGTCTGCCCGTTGGCTTAGACTTGGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * ** **
1659656 ATCAATCGTCTACCTATCGACTTAGGCTTGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1659698 ATCAATCGTTTGCCCATCGGCTTAGACTCGAGAAACTTC-TTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** ** * * *
1659740 ATCCATTATCTACCCACCAACTTAGACTC-AGGAGACTAT-GTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACT-TCTTTT
* * * * * *
1659783 GTCAATCGTCTATCCGTC-AGCTTCGACTCTAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
** *** * *
1659825 ATCAATTATCTACATTTCGACTTAGACCCGAGAAAC--CTTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* * * * **
1659867 ATCAATTGTTTACCCGT-TAGCTTAGACTCG-GAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * * **
1659908 ATTAATTGTCTACCCATCGGCTTAGACCTGAAAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * ** *
1659950 ATCAACCATCTACCCCTCGGCCTAAACCTAAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * * *
1659993 GTCAATCGTCCACTTGTCGGCGTAGTCCC-AGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * ** *
1660035 ATCCGTCATC-AGCCTGTCTG-CTTAGATTCGAGAGACTTC-TTC
1 ATCAATCGTCTA-CCCGTC-GACTTAGACCCGAGAGACTTCTTTT
* ** * * * ** * *
1660077 ATCCATTATATGCCCGT-TAGCTTA-ATCTTGAAAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGA-CCCGAGAGACTTCTTTT
* * * * * * * *
1660120 ATCAACCCTCTGCCCATCGGCTTAGACTCGAAAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * *
1660162 ATCAATCATCTGCCTATCGACTTAGACCTGGGAGAC--CTTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* ** * **** **
1660204 ATCAATCGTCTGCTTGTCGGCTTAGTGTTG-GAAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* ** * *
1660246 ATCAATTGTCTACCCGTCGGTTTAGA-CCTAGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * *
1660289 ATTAATAGCCTACCCATCGGCTTAGACCC-AGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * *
1660332 ATCAATCGTCTGCCCGTCGAATTAGA-GCTAGGAGACTTTTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
** * * * **
1660375 ATTTATCGTCTGCCCGTC-AGCTTAGA-CCTAGGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * * **
1660417 ATGAATCGTCTACCTGTTGACTTAGACTCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1660459 ATCAATCGCCTGCCCGTCGACTCAGACCCAAAAGACTCTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGA--CTTCTTTT
* * * * *
1660504 A--AA-CGTCTGCCCGTCAAGTTAGACCCGAGAAACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * ** * * * *
1660544 GTCAGTCATCTTCCTATC-AGCTCAAACCCAAGAAACTTCTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * *** *
1660587 ATCAATCATCTGCCCGTC-AGCTTAGACTTAAAAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCT-TTT
* * * * * ** * * **
1660630 GTCAATCATTTGCTCGTC-AGCTTAGACATGGGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * *
1660672 ATCAATCGTCTGCCCGTC-AGCTCAGACCTGGGAGACTT-TTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
*** * * *
1660714 ATTTTTCGTCTACCCATCGGCTTAGACCCGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * * * **
1660756 CTCAATCACCTGCCCGTTG-CTTAGACTCGTGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * *
1660797 ATCAATTGTCTGTCCGTC-AGCTTAGACTCGTGAGA-TT-TTTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTT-T
* * * * * * * **
1660839 ATCAATCG-ATGCCCATCGGCTTAGACTCGAGAAAATTCCCCTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTT-CTTTT
* * * * * * ** * *
1660882 -TCGATCGTCTACTCATTGGCTCA-ATCTTGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGA-CCCGAGAGACTTCTTTT
* * * * * * *
1660924 ATCAGTTGTTTACCCATCGACTTAGTCTCGGGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * * * *
1660967 GTTAATTATCTGCCCGTCGGCTCAGACCC-AGGAGACTTCCTCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * *
1661010 GTCAATCGTCTGCCCATCAACTTAGACCCGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * ** * ** * **
1661053 GTTAATCATTTGCCTAT-TAGCTTAGATTCGACAGAC-TCTTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* ** * * **
1661095 ATCAATTGTCTACCTATCGACTTAGACTCGGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** ** * * * *
1661137 AT-AAGTTATCTACCTATTGGCTTAGACCTGGGAGAC-TCTCTTT
1 ATCAA-TCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * * * * * * * *
1661180 GTCAATCTTCTGCTCATCGGCTCAGACCCGAAAGATTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1661223 GTCAATCATCTACCTGTTGGCTTAGACCCAAGAGACTT-TATGT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * * * * **
1661266 CTCAATCATCTACGCGTC-AGCTTAAACCCGATAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
** * * * * **
1661308 ATCAATTATTTA-CCTTCGACTTAGACTCGGGAGA-TT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * **
1661348 ATCAATCATTTGCCCATC-AGCTTAGACCCGTGAGACTTC-TCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* ** * * * * * *
1661390 ATCCATTATCTGCCCATCGGCTTAGACCTGGGAGACTTCATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * *
1661433 GTCAATCGTCT-CTCCATC-AGCTTAGACTCGAGAGACTT-TTTC
1 ATCAATCGTCTAC-CCGTCGA-CTTAGACCCGAGAGACTTCTTTT
*
1661475 ATCAATCGTCTACCCGTCGTCTTAGACCCGAGAGAC--CTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1661516 CATCAATTCGTTTGCCCTTCGGCTTAGA-CCTAGACACTT-TTCC
1 -ATCAA-TCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * **
1661559 ATCAATCATTTGCCCATTGACTTAGA-CCGATAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* *
1661600 ATCAATCGTCTTCCTC-TC-AGCTTAGA-CCTAGGAGACTTCTTTT
1 ATCAATCGTCTACC-CGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * * * ** *
1661643 GTCAATCATCTACCCATCGGCTTAG-TCCGAAGAGACTTGATAT
1 ATCAATCGTCTACCCGTCGACTTAGACCCG-AGAGACTTCTTTT
* * * **
1661686 ATCAATCGTCTACCCATCGGCTTAG-CCTTG-GAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACC-CGAGAGACTTCTTTT
* *** * * * **
1661727 ATCCATTACCTGCCTGTCGGCTTAGACCTAAGAGACTT-TGTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * *
1661770 ATCAATCGTCTGCTCGTCGACTTAGACTCGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * **
1661812 ATCAATCATCTGCCTATCGACTTAGACCC-AGGAGAC--CTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * **
1661853 CATCAATCGTTTGCCCGTCGGCTTAGA-CCTAGAGACTT-TTCC
1 -ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * * * **
1661895 ATTAATTGTTTGCTCATCAACTTAGACTCGAGAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * * *
1661937 ATCAATCATTTTCCCTTTGGCCTAGA-CCTAGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * * * *
1661980 GTCAATCGTCTGCCCATCGGCTTAGTCCTGAGAGACATCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * ** * *
1662023 ATCAATCATCATCTGCCCGTC-AGCTTATAATCGGGAGACTTC-TTC
1 ATC-A--ATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * * ** * * *
1662068 A-CCATTGTTTGCCTGT-TAGCTTAGTCTTGGGTGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * ** * *
1662110 ATCAACCCTCTACCCATCGGCTTAGACTTGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1662152 ATCAATCGTTTGCTCATC-AGCTTAGACCTGAGAGAC--CTTTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTT-T
* ** * **
1662194 ATCAATCGTCTA-CC-TACTGGCTTAGACCTAATAGACTT-TTCC
1 ATCAATCGTCTACCCGT-C-GACTTAGACCCGAGAGACTTCTTTT
* *
1662236 ATCAATCGTCTACCCATCGGCTTAGACCC-AGAAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* * * * *
1662279 ATCAATCATCTACCCAT-TAGCTTAGACTCGGGAGACTT-TGTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCT-TTT
* * * * ** * * *
1662322 ATTAATCATTTGCCTATCGGCTTAGACCCAAGAGACTTTTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1662365 GTCAATTGTTTGCCCGTCAACTTAGACTCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1662407 ATCAATCATCTGCTCGTTGGCTTATACCC-AGAAGACTTC-TTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
*** * * * * *
1662449 ATTTTTTGTCTACCCGTCGGCTTAGAGCCGAAAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * ** *
1662491 ATTAATTGTCTGCTCGT-TAGCTTAGA-TTGAGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * ** * * **
1662533 ATTAATTGTCTACTTGTCGACTTAGACTCGGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * *
1662575 ATCAATCGACGT--CCATC-AGCTTAGACCCGAGAGAATTCCTTT
1 ATCAATCGTC-TACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * *** * * * *
1662617 ATTAATCTTTTGTTCGTC-AGTTTAAACCTGGGAGA---C-TTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1662656 GTCAATCGTTTACCTGTCGACTTAGTCTCGGGAGACTTTTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * * * *
1662699 GTCAATTATCTATCCATC-AGCTTAAACCTGAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * ** * * *
1662742 ATCAATCTTTTACCTATCAACTTAGACCCGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * **
1662785 GTCAATCGTTTGCCTGTAGGCTTAGATCC-AGTAGAC-TCTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* *** * ** *
1662827 ATCAATCGTATACTTATCAACTTAGACCTAAGAGA-TT-TTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* ** * *
1662869 ATCAATCATCTACCAATCGGCTTAGACCCGAGAAACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * * * * *
1662912 GTTAATCATCTGCTCATCAACTCAAACCCAAGAGACTTCTTCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * *
1662955 ATCAATCATCTACCTATCGGCTTAGACCCAAGAGATTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * ** * * **
1662998 CTTAACCGTCTGCCTATCGACTTAGACCTGAGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * **
1663040 ATCAATTGTCTACCTTTCGACTTAGACTCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1663082 ATTAATCGTCTACGCGTTGGCTTAGACCTGGGAGACTTC-TCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * ** *
1663124 ATCCATTATCTGCCCGTCGGCTTAGACTTGGGAGACTT-TGTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * * * * *
1663167 GTCAATCATCTACCCATTGGCTTAGAACTG-GAAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCT-TTT
* * *** * * * **
1663210 GTCAATCGTCTGCTTATCGGCTTAGACTCGAGAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * ** *
1663252 ATCAATAGTCTACCCATCGGCTTAGA-CTTAG-GACATTTCTTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGAC--TTCTTTT
** * * ** * * *
1663295 ATCAATTATTTGCCTATCTG-CTCAGACCCAAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTC-GACTTAGACCCGAGAGACTTCTTTT
* * * * * * ** *
1663338 GTTAATCATCTACCTGTTGGCTTAGACTTGGGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1663381 CTCAATCGTTTGCCCATCTG-CTTAAACCAGA-AGACTT-TTCC
1 ATCAATCGTCTACCCGTC-GACTTAGACCCGAGAGACTTCTTTT
** * * * **
1663422 ATCAATCGTCTACCTATCGACTTAGGCTCAAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * *
1663464 ATCAATCGTCTGCCTATCGGCTTAGACCCGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** ** ** * *
1663506 ATCCATTATCTGTCCGTC-AGCTTAGACTTG-GAAAACTTCATTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAG-AGACTTCTTTT
* * * * *** *
1663549 GTCAATCGTCTGCCCGTCGGCATAGACTTAAGAGACTT-TCATT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * * * * * * * *
1663592 GTCAATCGTTTGCTCATTGGCTTAGTCCC-AGGAGACTTCCTCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * *
1663635 ATCGATCATCAACTCGTC-AGCTTAGACTCGAGAGACTTC-TTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * ** * *
1663677 ATCCATTGTCTGCCCGT-TAGCTTAGTCTTGAGAGGCTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * *
1663720 ATCAACCCTCTGCCCATCGGCTTAGACCCGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * *
1663762 ATCAATCATCTGCCCGTCGACTCAGACCCGGGAGAC--CTTTCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
** ** **
1663804 ATCAATCGTCTACCTATCGACTTAGAGTCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * * * * *
1663846 ATCTTTTGTCTGCCCATCAACTTAGACCCGAAAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * ** *
1663889 ATCATTC-ACTTGCCCATTGGCTTAGACCTAAGAGACTTCCTTT
1 ATCAATCGTC-TACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * *** * *
1663932 ATTAATCGTTTGCTTATCGACTTAGACCCGGGAGACTTCTTCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1663975 GTCAATCATCTGCCCGTCGGCTTAGA-CCTAG-GAC-ACTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * *
1664015 CCATCAATCGTCTACCCGTTGACTAAGACTCGAGAGACTT-TTTC
1 --ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1664059 ATCAATCGCCTACCCATCGGCTTAGATCCGAGAGACTT-TTCCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTT-TT
** * * *
1664102 -TCAATCGTCTACCTATCGGA-TTAGACCTGAGAAACTTCCTTT
1 ATCAATCGTCTACCCGTC-GACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1664144 GTCAATCATCTACCCAT-TAGCTTGGACCC-AGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
** * * * ** **
1664187 GCCAACCATCTGCCCGTC-AGCTTAGATTCG-GTAGA-TTCTTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAG-AGACTTCTTTT
* * * ** * **
1664229 ATCAATCATCAACCTGTC-AGCTTAGACTTGGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * *
1664271 ATCAATCATTTGCTCGTC-AGTTTAGACCCGAGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCT-TTT
* ** * * * * * *
1664314 GTCAATTATTTGCCCATCGACTCAAACCCGAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * ** * ** * *
1664357 GTCAATTGTCTGCCAATCGGCTTAGACTTGGGAGATTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** ** *
1664400 CTCAATCGTCTGCATGTCGACTTAGACTTGGGAGACTT-TTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * * * *
1664442 ATGAATCGTTTACCTATTGACTTAGGCTCGAGAGACTT-TATC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * *
1664484 ATCAATAGTTTGCCCATCGGCTTAGACTCGAAAGACTTC-TTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * *
1664526 ATCCATTATCTACCC-ACCAGCTTAGA-CCTAGGAGACTT-TGTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCT-TTT
* * * * * * *
1664569 GTTAATCGTTTACCTGTCGGCTTAGACTC-AGGAGACTTC-TTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * ** * *
1664611 ATCAATCATCTGCCC-TCCAGCTTAGACTTGGGAGAC--CTTTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTT-T
* * * * * **
1664653 ATTAATCATCTACCCGTC-AGCCTAAACTCG-GAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * ** * * * * * * **
1664694 ACCAATTGTCTACCCACCAACTTAAACCCAAAACAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1664736 ATCAATCATCTGCCCCTCGGCTTAGACCCAAGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * *
1664779 GTCAATCGTTTACCCGTCGGCTTAGTCCC-AGGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * *
1664822 ATCAATCATC-AGCCCGTTGACTTAAACCCGGGAGACTTC-TTC
1 ATCAATCGTCTA-CCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * ** * *
1664864 ATCCATTGTCTGCCCGT-TAGCTTAGTCTTGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * ** * *
1664907 ATCAACCCTCTA-CCATCGGCGTAGACTTGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * **
1664948 ATCAATCATCTGCCCGTCGACTTAGACTAGGGAGAAC-T-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAG-ACTTCTTTT
* * ** * *** **
1664990 ATTAATTGTCTACTTGTC-AGTTTAGAGTTGCA-AGACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCG-AGAGACTTCTTTT
* * * *
1665032 ATCAATCGTCTACCCGTTGGCTTAGACCCAAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1665075 ATTAATCGCCTACCCGTCGGCTTAGACCCAAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** *
1665118 ATCAATCATCTGCCCGTCGACTTAGACCTAAGAGACTTTTTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGAC-TTCTTTT
* * * * * * **
1665162 GTCAATCGTCTGCCCTTCGGCTTAGACCTGAGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * * **
1665204 ATCAATCGTCTACTAGTTGACTTGGACTCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * * * * * * * *
1665246 ATCAATCACCTGCCTGTAGGCTTTGACCCAAAAAAC-TCTTCCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTT-TT
* * * * * * * *
1665289 -TCAATCGTTTGCCCATTGATTTAGACTC-AGGAAACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * ** * * * *
1665331 GTCAATCATCTTCCTATTGGCTCAGACCCGGGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1665374 ATTAATCATTTGCCCGTCGGCTTA-AACCTAGAAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCT-TTT
* * * * * * ** * * **
1665417 GTCAATTGTTTGCTCGTCGGCTTAGACATGGGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * * *
1665459 ATCAATCGTCTGCCTATTGGCTCAGACCCGGGAGACTTC-TTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
*** * * * *
1665501 ATTTTTCGTCTACCCATC-AGCTTAGACTCGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * **
1665543 CTCAATCATCTGCCCGT-TAGCTTAGACTC-ATGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * * *
1665585 ATTAATTGTCTACCCATC-AGCTTAGACTCGGGAGA-TT-TTTCT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTT-T
* * ** * *** * **
1665627 ATCAATCG-ATGCCTATCGGCTTAGACTTAAGAGAATTCCCTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * * * *
1665669 GTCAATCATCTATTCATTGGCTCA-ATCTCGAGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGA-CCCGAGAGACTTCTTTT
* * * ** * *
1665712 ATCAATCGTTTACCTGTCGACTTAGTCTTGGGAGACTTTTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * * * *
1665755 GTTAATTATTTTCCCATCGACTCAGACTC-ACGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCT-TTT
* * * * * *
1665798 ATCAATCGTCTGCCCATCGACTTAAACTCGAAAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * * **
1665841 GTCAATTGTTTGCCTGTCTACTTAGATCTG-GTAGAC-TCTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* ** * **
1665883 ATCAATCGTCTGCCTATTGACTTAGACCCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* *
1665925 ATTAATTGTCTACCCGTC-AGCTTAGACCCGAGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCT-TTT
* * * * * * * *
1665968 CTCAATCATCTGCTCGTCGGCTCAAACCCGAGAGACTT-TCTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * ** * * * *
1666011 GTCAATTGTCTATCTATCGGCTTAGACCTGAAAGACTTCATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * ** * *
1666054 CTCAATCCTCTGCCCGTCGGCTTAGACCTTAGAAACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1666096 ATAAATTGTCTACCCTTTGACTTA-ACCTCGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACC-CGAGAGACTTCTTTT
* * * ** * *
1666138 ATCAATCATCTGCCCATCGGTTTAGA-CCAAGGAGACTTC-TCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * ** ***** * * *
1666180 GTCCATTATCTGGTTATC-AGCTTAGACCTGGGAGACTTCGTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * **
1666223 GTCAATCGTCTCCCCATTTG-CTTAGAATCGAGAGAC--CTTTT
1 ATCAATCGTCTACCC-GTCGACTTAGACCCGAGAGACTTCTTTT
* * *
1666264 CATCAATCGTCTACCCGTCGACTTAGACCTGGGTA-AC--CTTTCC
1 -ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTT-T
* * * * *
1666307 ATCAATTGTCTGCCCGTCGGCTTAGA-CCTAGAGACTT-TTCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * **
1666348 ATCAATCGTTTGCCCGTCGACTTAGACCCGGGAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * *
1666390 ATCAATCATTTGCCCTTTGGCTTAG-GCCTAGGAGACTTCCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTT-CTTTT
* * * * * *
1666434 -TCAATCGTCTGCCCAT-TAGCTTAG-TCCAAGGAGACTTCATTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * ***
1666476 ATCAATTGTCTGCCCATC-AGCTTAGACCCGAGAGACTTC-CCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* ** ** * *
1666518 ATCCATTATCTGTCCGTCGGCTTAGA-CCTAGGAGACTT-TGTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCT-TTT
* * * * * * *
1666561 GTCAATTGTCTACCTGTTGGCTTAGACTC-AGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * ** * *
1666602 ATAAATCATCTACCTGTCGACTTATACTTGGGAGAC--CTTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* * * * * **
1666644 ATCAATTGTTTGCCCGTCGGCTTAGACCTG-GAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * **
1666685 ATCAATCGTTTTCCAGTCGACTTAGACCCGGGAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1666727 ATCAAACGTCTGCCCGTTGTCTTAGACCTC-ATAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACC-CGAGAGACTTCTTTT
* * * * * * *
1666770 GTCAATCGTTTGCCCATCGGCTTAG-TCCGAAGAGACTTCATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCG-AGAGACTTCTTTT
* * * **
1666813 ATCAATCGTCTTCCCGTCGGCTTAGACCTTG-GAGA--TCTCTCC
1 ATCAATCGTCTACCCGTCGACTTAGACC-CGAGAGACTTCT-TTT
* ** * * * * *
1666855 ATCCATTATCTGCCCATTGGCTTAGA-CCTAGGAGACTT-TGTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCT-TTT
* * * ** *
1666898 GTCAATCGTCTAACCGTCAACTTAGACTTGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * *
1666940 ATCAATCGTCTACCCATCGGCTTAGA-CTGATGATAC--CTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * **
1666981 CATCAATCGTCTGCTCATCGGCTTAGA-CCTAGAGACTT-TTCC
1 -ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1667023 ATCAATCGTTTGCCTGTCGACTTAGACCC-AGGAGAGTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
** * * * *
1667065 ATCAATTATCTTCCCCTCGGCTTAGA-CCTAGGAGACTT-TTTGT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTT-T
* * * * * * * * *
1667108 GTCAATTGTCTGCCCATCGACTTAGTCTCGGGACACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** ** *
1667151 ATTAATTGTCTGTCCGTC-AGCTTAGAATCGAGAGACTTC-TTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * * *
1667193 ATCCATTGTCTGCCCGT-TAGCTTAGTCCTGGGAGACTTCCTTTA
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTT-CTTTT
* * * * ** ** ** * *
1667237 ATGATTCCTCTGCCTATCGGTTTAGACTGGAAAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * *
1667279 ATCAATCATCTGCCCGTCGGCTTAGACTCGAGAGAC--CTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * *** * **
1667320 CATCAATCATCAACTTGTCGGCTTAGAGTTGGGAGACTT-TTCC
1 -ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * *
1667363 ATCAATCATCTACCTGTC-AGCTTAGACCC-AGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * * ***
1667406 ATCAATCTTCTGCCCATCGGCTTAGACTTAAGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * ** **
1667449 GTCAATCGTCTGCCCGTCGGCTTAGA-CTTAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1667490 ATCAATTGTCTACCCATCGGCTTAGACCTGAAAGAGTT-TTCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1667532 ATTAATCATCTACCCCTTGACTTAGGCCCAAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * **
1667575 GTCAATCGTCTGCCCATCGGCTTAGTCGTGAGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1667618 ATCAATCATCGACCCATCGGCTTAGACTCGGGAGACTTC-TTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * *
1667660 ATCCATTGTCTGCTCGT-TAGCTTAG-TCCTAGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * ** * * *
1667703 ATCAACCCTCTGCCTATC-AGCTTAGACTCGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * *
1667745 ATCAATCATTTGCCCGTCGGCTTAGACCTGAGAGAC--CTTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* * *** * *** * **
1667787 ATCAATCATCTGCTTATCGGCTTAGAGTTGGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1667829 ATCAATCGTCTACCTGTCGGCTTGGACCCAAGAGACTTCATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1667872 ATTAATC-ACTTGCCTGAT-GACTTAGA-CCTAGGAGACTTCCTTT
1 ATCAATCGTC-TACCCG-TCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * * * * *
1667915 ATCAATCTTTTGCCCATTGGCTTAGACCTGGGAGACTTTTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1667958 GTCAATCGTCTGCCTGTCGGCTTAGA-CCTAGGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * ** **
1668000 ATCAATCGTCTACCTGTTGACTTAGACTTGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * * **
1668042 ATCAATCACCTACCCATTGGCTTAGACCC-AGAAGACTAT-TCCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACT-TCTTTT
* * *
1668085 -TCAATCGTCTGCCCGTCGGCTTAGACCCGAGAAACTTCCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTT-CTTTT
* * * * * *
1668128 -TCAATCATCTTCCCATCGAGTCAGACCCGGGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * *
1668170 ATCAACCATCTGCCCGTC-AGCTTAGA-CCTAGAAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAG-AGACTTCT-TTT
* * * * * * ** * * **
1668213 GTCAATCGTCTGCTCATTGGCTTAGACATGATAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * *
1668255 ATCAATCATCTGCTTGTCGGCTCAGACCTG-GAAGACTTC-TTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
*** * * * *
1668297 ATTTTTTGTCTACCCAT-TAGCTTAGACCCGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * * * * **
1668339 CTCAATCATCTGCCCAT-TAGCTTATACTCGTGAGTCTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * ** * * * * * *
1668381 GTCAATTGTCTGTCTGTCAACCTAAACTCGAGAGA-TT-TTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
** * * * * * * **
1668423 ATCAATC-AATGCCCATCGGCATAGACCCAAGAGAATTCCCTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * ** * * *
1668465 GTCAATCATCTAGTCATCGACTCA-ATCTTGGGAGACTTCCTTC
1 ATCAATCGTCTACCCGTCGACTTAGA-CCCGAGAGACTTCTTTT
* * ** * * * * *
1668508 A-CAATCATTTACCTATCAACTTAGTCTCGGGTGACCTT-TTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGA-CTTCTTTT
* * ** * * * * * *
1668550 GTTAATTATGTGCCCATCGACTCAAACCC-AGCAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* * ** * *
1668593 ATCAATCGTGTGCTTGTCGACTTAGACTCG-GAAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* * * * * * * * **
1668636 GTTAATCATTTGCCTGTCGGCTTAGATCCG-GTAGAC-TCTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* * * ** * ** **
1668678 ATCTATCGCCTGCCTATC-AGCTTATATTCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * ** *
1668720 ATCAATTGTTTACCTATCGGCTTAGACCCGAGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * * * * *
1668763 CTCAATCATC-AGCTCATCTACTCAGACCCGAGAGACTTCCTTT
1 ATCAATCGTCTA-CCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * * *
1668806 ATCAATCGTCTACCTGTCGGTTTACACTCGAGAGACTTCATAT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1668849 CTCAATCGTCTCCCCGTTGGCTTAGACCCAAGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1668891 ATCAATTGTTTACCCGTTGACTTAAACTCGGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * **
1668933 ATCAATTGTTTGCCTGTCGGCTTAGACCCAAAAGACTTC-TCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** ** * * * *
1668975 ATCCGTTAT-TACCCATCGGCTTAGACCTGGGAGACTT-TATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * *** * ** *
1669017 GTCAATCATCT-CATTATC-AATTAGACTTGAGAGACTT-TTTC
1 ATCAATCGTCTAC-CCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * *
1669058 ATCAATCGTCTACCCATCGACTTAGACTCGGGAGAC--CTTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* * * * * **
1669100 ATCAATTGTTTGCCCCTCGACTTAGA-CCTAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * **
1669141 ATCAATTGTGTGCCCATCAACTTAGACCCGGGAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1669183 ATCAATTGTCTACCCCTCGGCTTAGA-CCTAGGAAACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCT-TTT
* * * * *
1669226 ATCAATCGTCTGCCCATCGACTTAG-TCTGAGGAGACTTCATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * **
1669269 ATCAATCGTTTACCCATCGGCTTTA-ACCTGGGAGACTTC-TCC
1 ATCAATCGTCTACCCGTCGAC-TTAGACCCGAGAGACTTCTTTT
* ** * * * *
1669311 ATCCATTATCTACCCATC-AGTTAGA-CCTAGGAGACTTCGTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * ** * *
1669353 GTCAATCATTTACCCGTAGACTTAGACTTGATAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* *
1669395 ATCAATCATCTACCCGTC-AGCTTAGATCC-AGGAGAC--CTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * * ** * * **
1669436 CATCAATCATCTGCTCGTCGGCTTAGACATGGGAAACTT-TTCC
1 -ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * *
1669479 ATCAATCATCTGCTTGTCGGCTCAGACCTG-GAAGACTTC-TTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
*** * * * * *
1669521 ATTTTTTGTCTACCCATTGGCTTAGACCC-AGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * * *** * * **
1669563 CTCAATCATCTGCCCAT-TAGCTTATAGTTGTGAGTCTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * * *
1669605 ATCAATTGCCTGCCCGTCAACCTAAACTCGAGAGA-TT-TTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
** * * * * * **
1669647 ATCAATC-AATGCCCATCGGCTTAGACCCAAGAGAATTCCCTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * ** * *
1669689 GTCAATCATCTAGTCATCGACTCA-ATCTTGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGA-CCCGAGAGACTTCTTTT
* * * ** * * * * * *
1669732 A-CAATCATTTGCCTATCAACTTAGTCTCGGGTGACTTTTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * * * * * *
1669774 GTTAATTATGTGCCCATCGACTCA-AACCTAGCAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* * * * * * * *
1669817 ATCAATCGTGTGCCTGTTGACTTAGGCCTGAAAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * * **
1669860 GTTAATC-ACTTGCCTGTTGGCTTAGATCCG-GTAGAC-TCTTCC
1 ATCAATCGTC-TACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* * * ** * * ** **
1669902 ACCTATCGTCTGCCTATCAACTTATATTCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** *
1669944 ATCAATTGTCTACCTATCGGCTTAGACCCGAGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * * * * * *
1669987 CTCAATCATC-AGCTCATCGGCTCAGACCAGAGAGACTTCCTTT
1 ATCAATCGTCTA-CCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * *
1670030 GTCAATCGTCTACCTGTCGGTTTAGACTCGAGAGACTTCATAT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *** * **
1670073 CTCAATTGTCTGCCCATTGGCTTAGACTTAAGAAACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1670115 ATCAATTGTTTACCCGTTGACTTAAACTCGGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * **
1670157 ATCAATTGTTTGCCTGTCGGCTTAGACTCGAAAGACTTC-TCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * * *
1670199 ATCCATTAT-TACCCATCGGCTTAGACCTG-GCAGACTTCATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* * * * ** ** * *
1670241 GTCAATCATCT-CATCATCGGGTTAGACTTGAGAGACGT-TTTC
1 ATCAATCGTCTAC-CCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * *
1670283 ATCAATCGTCTACCCATCGACTTAGACTCGGGAGAC--CTTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* * * * * **
1670325 ATCAATTGTTTACCCCTTGACTTAGACCTG-GAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * **
1670366 ATCAATTGTTTGCCCATCAACTTAGACCCGGGAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * *
1670408 ATCAATTGTCTACCCCTCGGCTTAGA-CCTAGGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCT-TTT
* * *
1670451 ATCAATCGTCTGCCCATCGACTTAG-TCCGAGGAGACTT-TATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCT-TTT
* * * * * * *
1670494 ATCAATCGTTTACCCATTGGCTTTA-ACCTGGGAGACTTC-TCT
1 ATCAATCGTCTACCCGTCGAC-TTAGACCCGAGAGACTTCTTTT
* ** * * * * *
1670536 ATCCATTATCTTCCCATCG-GTTAGA-CCTAGGAGACTTCGTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * *
1670578 GTCAATCGTTTGCCCGTAGACTTAGACTCGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1670620 ATCAATCGTCTACCCATC-AGCTTAAATCC-AGAAGAGTT-TTTC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAG-AGACTTCTTTT
* * * * * *
1670662 ATCAATCATCTGCTCGTCGGCTTAGA-CCTAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * * * * **
1670703 ATCAATCGT-TTGCCATCAACTTAGAGCCGGGAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1670744 ATTAGTCGTCTTCCCATTGACTTAGA-CCTAGGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCT-TTT
* * * * * * *
1670787 GTCAATCGTCTGCCCATCGGCTTAGTCTCGAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * ** *
1670830 GTCAAT-GATCTGTCCGTCGGCTTAGAATCGGGAGACTTC-TTT
1 ATCAATCG-TCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * * * *
1670872 ATCCATTGTTTGCCTGT-TAGCTTAGTCCTGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1670915 ATCAACCCTCTGCCCATCAACTTAGA-CCTAGGAGACTT-TTTA
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* ** * * *
1670957 ATCAATCGTCTGCTTGTCGGCTTAGACCCGGGAGAC--CTTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* * * **
1670999 ATCAATTGTCTACCTGCCGGTTTAGACCCGAGAGACTT-TTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1671041 ATCAATTGTCTGCCCATC-AGCTTAGA-CCTAGAAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAG-AGACTTCTTTT
* * * * * * * *
1671084 ATCAATCATCTGCCCGTTGGCTTAGACTCGGGAGATTTCATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1671127 ATTAATCATCTGCCCGTC-AGCTTAGACTCGAGAGAC-TCTATT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * **
1671169 ATCAATCGTATGCCCGTCGGCTTAGACCCGGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
** * * * *
1671211 ATCAATTATCTGCCCGTTGGCTTCA-ACCCTAGAGACTT-TTTT
1 ATCAATCGTCTACCCGTCGACTT-AGACCCGAGAGACTTCTTTT
* * * * *
1671253 -T--TTTGTCTACCCATC-AGCTTAAACCCG-GAAGACTT-TTTA
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAG-AGACTTCTTTT
* * * * * **
1671292 ATCAATCGTCTGCCCAT-TAGCTTAGACTCAAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * **
1671334 ATTAATTGTCTGCCCGTCGACTTAGACTCGGGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1671376 ATCAATCG-ATGCCCAT-TAGCTTAGACCCGAGAGAATT-TCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCT-TTT
* *** * * * *
1671418 ATCAATTGTCTGTTCATCG-GTTCAAACCCAAGAGACTT-TTTAT
1 ATCAATCGTCTACCCGTCGACTT-AGACCCGAGAGACTTCTTT-T
* * * * *
1671461 ATCAATCGTTTACCCATC-AGCTTAGTCTCGGGAGACTT-TTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
** * * * * * * *
1671503 CATCAATTATCTACCCATCGGCTCAGACCTGGGAGATTTCCTTT
1 -ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * *
1671547 ATCAATCATCTGCCCATCGACTTAGACCCGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * **
1671590 GTCAATCATTTGCCTGTCGGCTTAGA-TC-AGTAGAC-TCTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* ** * *
1671631 ATCAATCGTCTGCCTAT-TAGCTTAGACCCGAGAGA-TT-TTTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTT-T
* ** * **
1671673 ATTAATCGTCTACCTAT-TAGCTTAGACTAG-GAGACTTTCTTTGT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGAC-TTCTTT-T
* * * * * *
1671717 -T-AATCATCTGCTCGTCGGCTTAGACCCGAGAGACTGCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * ** * * *
1671758 GTTAATCATCTACCTATTGGCTTAGACCCAAGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * ** * * * **
1671801 CTTAACCATCTACCTATCGACTTAGACTCGAGAAACAT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** **
1671843 ATCAATTGTCTACCCTTCGACTTAGACTTGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * *
1671885 ATCAATCGTTTACCCGTCTG-CTTAGACCTG-GAAGACTTCATTT
1 ATCAATCGTCTACCCGTC-GACTTAGACCCGAG-AGACTTCTTTT
* * * * * * *
1671928 GTCAATCATCTACTCGTCGGCGTAGACTCGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* *** * * * * * *
1671970 ATTAAAAATTTGCTCATGGGCTTA-AGCCCGAGAGAC--CTTTT
1 ATCAATCGTCTACCCGTCGACTTAGA-CCCGAGAGACTTCTTTT
* * * * ***
1672011 CATCAATCGTCTGCCCGTCGGCTTAGATCTG-GAGACTT-TACC
1 -ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1672053 ATCAATCGTTTGCCCATCGACTTAGGCCCAAGAGAGTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1672095 ATCAATTGTCTGCCCCTCAACTTAGA-CCTAGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* ** * * ** *
1672138 GTCAATCGT-TTGCCATCGACTTAGTCTTGAGAAACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * ** *
1672180 ATCAATCGTCTGCCCATTGGCTTAGAATC-AGGAGACTTC-TTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * * * * *
1672222 ATCCATTGTCTACCCGT-TAGCTTAGTCTCGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * ** * * *
1672265 ATCAACCCTTTGCCCATCGACTTAGAGTCGGGAGACTT-TCTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * ** *
1672307 ATCAATCGTCTGCCCGTTGACTTAAAGTCGGGAGAC--CTTTCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* * * * * * **
1672349 ATCAATCATCAACCTGTCGGCTTAGACCCAAGAGACAT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1672391 ATCAATCGTCTGCCCATCGAGTTAGA-CCTAGTTGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* * * * *
1672434 ATCAATCATCTGCCCGTC-AGCTTAAACCCGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * *
1672477 ATCAATCATCTGCCCATC-AGCTTAGACTCGAAAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * ** ** **
1672520 GTCAATCGTCTGCCCATCGGCTTAGA-CTTAGGAGAC-AATTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGA-GAGACTTCTTTT
* * * ** * *
1672562 ATCAATCGTCTATCCATCGGCTTAGACTTG-GAACACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAG-AGACTTCTTTT
* * * * *
1672605 GTCAATCGTCTGCTCGTCGGCTTAGACCCGAGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * ** * * *
1672647 ATCAATCATCTGCCTGTTGGTTTAGACACGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1672690 ATTAATCATCTACCTGTCGGCTTAGATCCGGGAGACTT-TTCT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1672732 ATCAATCGTCTGCCTGTTGGCTTAGACCCGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * **
1672775 ATCAATTGTTTGCCCGT-TAGCTTAAACCTGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * * * *
1672817 ATCAATTGTATGCCCGTCGGCTTAAACTCGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * **
1672860 ATCAATTGTCTGCCTGTC-AGCTTAGACCTGAGAGAGTT-TTCC
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * *
1672902 ATCAATCATCTACCTGTC-AGCTTAAACTCGTGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* *
1672945 GTCAATCGTCTACCCATCGACTTAGACCCGAGAGACTT-TTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * *
1672987 CTCAATCATCTGCCCATCGGCTTAGACCCGGGAGA-TTTTCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* ** * *
1673030 ATCAATCGTCTGCTTGTC-AGCTTAGGCCC-AGGAGACTTTTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGA-GAGACTTCTTTT
* * * * * *
1673073 GTTAA---T-TACCCATC-AGCTCAGACCTGGGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * * * * *
1673112 GTCAATTGTCTGCCCATC-AGTTTAGACCCGAGAGACTT-TTCCT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTT-TT
** * * ** * * * *
1673155 -TCAATTATCTAGCTGTCGGTTTAAACCTGAGACACTTCATTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * ** * * **
1673197 GTCAATCATCTGCCTATCGGCTCAGACCCGAGAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * *
1673239 ATCAATCATCTACCCATCGACTTAAACTCGGGAGACTTTTTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGAC-TTCTTTT
* * * * * * *
1673283 GTTAATCGTCTGCTCATCGACTTAGACCCGGGAGA-TT-TTTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTT-T
* * * * * ** * *
1673325 ATCAATCG-ATGCTCATCGGCTTAGACTTGAAAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * ** * * * *
1673367 GTCAATCGTCTGCCTATCGGCTCAGACCTGAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * **
1673410 ATCAATTGTCTACCCATCGACTTAGATTCGAGAGACTTCTTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* ** * * * * * *
1673453 GTCAATTATCTGCCTG-CCAGCTCAGACCCGGGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTTTT
* * *
1673496 ATCAATCATCTGCCCGTCGGCTTAGACCCGAGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * * **
1673539 GTCAATCGTCTACCCGTCGGCTTAGACCTGAAAGACTT-TTCC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* * * * * * * *
1673581 ATGAATTGTTTGCCTGTTGGCTTAGACCCGGGAGACTT-TCTTT
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCT-TTT
* * * * * * * * *
1673624 GTCAATCATCTGCTCGTCGGCTTATACCTGGGAGACTT-TTTC
1 ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
* *** * * *
1673666 ATCAATCGTCTGCTTATCGACTCA-ATCCTGAGAGACTTCCTTT
1 ATCAATCGTCTACCCGTCGACTTAGA-CCCGAGAGACTTCTTTT
* * * *
1673709 ATTAATCGTCTACCCGT-TAGGTTAGACCTGAGAGACTTCTT
1 ATCAATCGTCTACCCGTCGA-CTTAGACCCGAGAGACTTCTT
1673750 CCTCCATTGT
Statistics
Matches: 14537, Mismatches: 4819, Indels: 1863
0.69 0.23 0.09
Matches are distributed among these distances:
33 9 0.00
34 24 0.00
35 5 0.00
36 4 0.00
37 2 0.00
38 9 0.00
39 108 0.01
40 101 0.01
41 1172 0.08
42 6534 0.45
43 6198 0.43
44 273 0.02
45 11 0.00
46 28 0.00
47 4 0.00
48 15 0.00
49 15 0.00
51 3 0.00
53 22 0.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (43 bp):
ATCAATCGTCTACCCGTCGACTTAGACCCGAGAGACTTCTTTT
Found at i:1655850 original size:42 final size:42
Alignment explanation
Indices: 1655672--1655851 Score: 148
Period size: 43 Copynumber: 4.2 Consensus size: 42
1655662 TAGCTTGACT
* * * *
1655672 CGAGAGACATTTTCATCAATCGTCTGCCCGTCGGTTAAGACC
1 CGAGAGACTTTTTCATCAATCATCTGCCCATCGATTAAGACC
* * *
1655714 CGAGAGACTTTCTTTATCAATTATCTGCCCATCGACTAAGA-C
1 CGAGAGACTTT-TTCATCAATCATCTGCCCATCGATTAAGACC
* ** * * * * *
1655756 CAAGGAGACTTCCTCAGTTAATCATCTGCCTATTGATTTAGATC
1 CGA-GAGACTTTTTCA-TCAATCATCTGCCCATCGATTAAGACC
* * *
1655800 CGAAAGACTTTTTCATCAATCATCTGCCTATCGATTTAGACC
1 CGAGAGACTTTTTCATCAATCATCTGCCCATCGATTAAGACC
1655842 TCG-GAGACTT
1 -CGAGAGACTT
1655852 CCTTTGCCAA
Statistics
Matches: 108, Mismatches: 25, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
42 45 0.42
43 60 0.56
44 3 0.03
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (42 bp):
CGAGAGACTTTTTCATCAATCATCTGCCCATCGATTAAGACC
Found at i:1656265 original size:42 final size:43
Alignment explanation
Indices: 1656127--1656290 Score: 107
Period size: 43 Copynumber: 3.8 Consensus size: 43
1656117 CAATCGTCTG
* * * * *
1656127 CCCATCGGCTTAGACCCAGGAGACTTTCTTTATCAATCGTCTG-
1 CCCATCAGCTTAGACTCGGGAGACTTCCTTTATCAATCATC-GA
* ** * * **
1656170 CCCGTTGGCTTAGTCCCAAGAGACTTCCTTTATCAATCATCGA
1 CCCATCAGCTTAGACTCGGGAGACTTCCTTTATCAATCATCGA
* * *
1656213 CCCATCAGCTTAGACTCGGGAGACTT-CTTTATCCATTATCTA
1 CCCATCAGCTTAGACTCGGGAGACTTCCTTTATCAATCATCGA
* * * * * * *
1656255 CCTATTAGCTTAGTCTTGGGAGGCATCTTTTATCAA
1 CCCATCAGCTTAGACTCGGGAGACTTCCTTTATCAA
1656291 GCCTCTGCCC
Statistics
Matches: 95, Mismatches: 24, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
42 34 0.36
43 61 0.64
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (43 bp):
CCCATCAGCTTAGACTCGGGAGACTTCCTTTATCAATCATCGA
Found at i:1657042 original size:128 final size:128
Alignment explanation
Indices: 1656804--1657044 Score: 270
Period size: 128 Copynumber: 1.9 Consensus size: 128
1656794 CAATCATCTA
* * * * * *
1656804 CCTGTCGACTTAGACCCGAGAGACTTTTCCATCAATCGTTTACCCTTCGGTTTAGACCTAAGAGG
1 CCTGTCGACTTAGACCCGAGAGACTTTTCCATCAATCGTCTACCCGTCGGCTAAGACCAAAGAGA
*** * * *
1656869 CTTTCTTTGTCAATCATTTGCCCATCGACTTAAACTTGAGAGACTTTTTTTGTCAATTGTTTG
66 CTTTCTCCATCAATCATCTACCCATCGACTTAAACTCGAGAGACTTTTTTTGTCAATTGTTTG
* * *
1656932 CCTGTCGACTTAGACCCGGGAGGCTTCTTTTC-TCAATCGTCTACCCGTCGGCTAAGACCAAAGA
1 CCTGTCGACTTAGACCCGAGAGAC-T-TTTCCATCAATCGTCTACCCGTCGGCTAAGACCAAAGA
* * ** *
1656996 GACTTT-TCCATCAATCGTCTACCTATCGACTTAGGCTCGAGGGACTTTT
64 GACTTTCTCCATCAATCATCTACCCATCGACTTAAACTCGAGAGACTTTT
1657045 CCATTAATCG
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
128 54 0.59
129 33 0.36
130 4 0.04
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.34
Consensus pattern (128 bp):
CCTGTCGACTTAGACCCGAGAGACTTTTCCATCAATCGTCTACCCGTCGGCTAAGACCAAAGAGA
CTTTCTCCATCAATCATCTACCCATCGACTTAAACTCGAGAGACTTTTTTTGTCAATTGTTTG
Found at i:1657261 original size:41 final size:41
Alignment explanation
Indices: 1657173--1657283 Score: 134
Period size: 41 Copynumber: 2.7 Consensus size: 41
1657163 GAGATTTTTT
** **
1657173 CATCAATCATCTACCCATTGGCTTAGATC-CGGGAGACCTTTC
1 CATCAATTGTCTACCCATCAGCTTAGA-CAC-GGAGACCTTTC
* *
1657215 CATCAATTGTCTACCCGTCAGCTTAGACACGGAGACTTTTC
1 CATCAATTGTCTACCCATCAGCTTAGACACGGAGACCTTTC
*
1657256 TATCAATTGTCTACCCATCAGCTTAGAC
1 CATCAATTGTCTACCCATCAGCTTAGAC
1657284 CTGAAAAAGT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 37 0.62
42 23 0.38
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (41 bp):
CATCAATTGTCTACCCATCAGCTTAGACACGGAGACCTTTC
Found at i:1657460 original size:42 final size:43
Alignment explanation
Indices: 1657331--1657518 Score: 127
Period size: 43 Copynumber: 4.4 Consensus size: 43
1657321 TAGACCTAAA
** * ** *
1657331 AGACTTCCTTTGTCAATCGTTTGCCTGTCGACTTAGTCCTGGG
1 AGACTTCCTTCATCAATCGTTGGCCCATTGACTTAGTCCTGGG
* *
1657374 AGACTTCCTTTATCAATCGTTGGCCCATTGACTTAG-ACTCGGG
1 AGACTTCCTTCATCAATCGTTGGCCCATTGACTTAGTCCT-GGG
* *
1657417 AGACTT-CTTCATCCATTGTCT-GCCCATT-AGCTTAGTCCTGGG
1 AGACTTCCTTCATCAATCGT-TGGCCCATTGA-CTTAGTCCTGGG
* * * * * * * *
1657459 AGACTTTCTTTATCAACCCTTTGCCTATTGGCTTAG-ACTAGGG
1 AGACTTCCTTCATCAATCGTTGGCCCATTGACTTAGTCCT-GGG
*
1657502 AGACTT-TTTCATCAATC
1 AGACTTCCTTCATCAATC
1657519 ATCTGCCCAT
Statistics
Matches: 116, Mismatches: 21, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 44 0.38
43 71 0.61
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (43 bp):
AGACTTCCTTCATCAATCGTTGGCCCATTGACTTAGTCCTGGG
Found at i:1657470 original size:85 final size:85
Alignment explanation
Indices: 1657362--1657528 Score: 235
Period size: 85 Copynumber: 2.0 Consensus size: 85
1657352 TGCCTGTCGA
* * *
1657362 CTTAGTCCTGGGAGACTTCCTTTATCAATCGTTGGCCCATTGACTTAGACTCGGGAGACTTCTTC
1 CTTAGTCCTGGGAGACTTCCTTTATCAACCCTTGGCCCATTGACTTAGACTAGGGAGACTTCTTC
* **
1657427 ATCCATTGTCTGCCCATTAG
66 ATCAATCATCTGCCCATTAG
* * * * *
1657447 CTTAGTCCTGGGAGACTTTCTTTATCAACCCTTTGCCTATTGGCTTAGACTAGGGAGACTTTTTC
1 CTTAGTCCTGGGAGACTTCCTTTATCAACCCTTGGCCCATTGACTTAGACTAGGGAGACTTCTTC
1657512 ATCAATCATCTGCCCAT
66 ATCAATCATCTGCCCAT
1657529 CGGCTTAAAC
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (85 bp):
CTTAGTCCTGGGAGACTTCCTTTATCAACCCTTGGCCCATTGACTTAGACTAGGGAGACTTCTTC
ATCAATCATCTGCCCATTAG
Found at i:1658006 original size:129 final size:129
Alignment explanation
Indices: 1657710--1658029 Score: 367
Period size: 129 Copynumber: 2.5 Consensus size: 129
1657700 GGCTTAGACT
* * *
1657710 CGAGTGACTTCCTTTGTCAATCGTTTACTTGTCGGCTTAGATCTAGGAGAC-T-TTTCCATCAAT
1 CGAGAGACTTCCTTTGCCAATCGTTTACTTGTCGGCTTAGATCTAGGAGACTTCTTTTC-TCAAT
* * * * * * **
1657773 CGTTTGCCCATTGATTTAGACCTGAGAGACTTCCTTTGTCAGTCATCTGCTTGTCGGCTCAGGCC
65 CGTCTACCCATTGACTTAGACCTGAGAGACTTCCTTTGTCAATCATCTACTCGTCGGCTCAAACC
* * * **
1657838 CAAGAGACTTCCTTTACCAATCGTTTGCTTGTCAACTTAGATCTAGGAGACTTCTTTTCTCAATC
1 CGAGAGACTTCCTTTGCCAATCGTTTACTTGTCGGCTTAGATCTAGGAGACTTCTTTTCTCAATC
* *
1657903 GTCTACCTATTGGCTTAGACCCTG-GAGACTTCCTTTGTCAATCATCTACTCGTCGGCTCAAACC
66 GTCTACCCATTGACTTAGA-CCTGAGAGACTTCCTTTGTCAATCATCTACTCGTCGGCTCAAACC
* * * * * * * *
1657967 CGAGAGACTTTCTTTGCCAATCGTCTACCTATGGGCTTAGAACCAGGAGACTTCTTTTTTCAA
1 CGAGAGACTTCCTTTGCCAATCGTTTACTTGTCGGCTTAGATCTAGGAGACTTCTTTTCTCAA
1658030 CTGCCTGCCC
Statistics
Matches: 158, Mismatches: 31, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
128 44 0.28
129 106 0.67
130 8 0.05
ACGTcount: A:0.21, C:0.26, G:0.18, T:0.35
Consensus pattern (129 bp):
CGAGAGACTTCCTTTGCCAATCGTTTACTTGTCGGCTTAGATCTAGGAGACTTCTTTTCTCAATC
GTCTACCCATTGACTTAGACCTGAGAGACTTCCTTTGTCAATCATCTACTCGTCGGCTCAAACC
Found at i:1658059 original size:129 final size:129
Alignment explanation
Indices: 1657787--1658060 Score: 282
Period size: 129 Copynumber: 2.1 Consensus size: 129
1657777 TGCCCATTGA
* * * * **
1657787 TTTAGACCTGAGAGACTTCCTTTGTCAGTCATCTGCTTGTCGGCTCAGGCCCAAGAGACTTCCTT
1 TTTAGACCTGGGAGACTTCCTTTGTCAATCATCTACTCGTCGGCTCAAACCCAAGAGACTTCCTT
* * * * * * * * **
1657852 TACCAATCGTTTGCTTGTCAACTTAGATCTAGGAGACTTCTTTTCTCAATCGTCTACCTATTGG
66 TACCAATCGTCTACCTATCAACTTAGAACCAGGAGACTTCTTTTCTCAATCGCCTACCCATCAG
* * *
1657916 CTTAGACCCT-GGAGACTTCCTTTGTCAATCATCTACTCGTCGGCTCAAACCCGAGAGACTTTCT
1 TTTAGA-CCTGGGAGACTTCCTTTGTCAATCATCTACTCGTCGGCTCAAACCCAAGAGACTTCCT
* *** * *
1657980 TTGCCAATCGTCTACCTATGGGCTTAGAACCAGGAGACTTCTTTTTTCAA-CTGCCTGCCCATCA
65 TTACCAATCGTCTACCTATCAACTTAGAACCAGGAGACTTCTTTTCTCAATC-GCCTACCCATCA
1658044 G
129 G
*
1658045 TTTAGACTTGGGAGAC
1 TTTAGACCTGGGAGAC
1658061 ATTTCCATCA
Statistics
Matches: 115, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
128 3 0.03
129 109 0.95
130 3 0.03
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (129 bp):
TTTAGACCTGGGAGACTTCCTTTGTCAATCATCTACTCGTCGGCTCAAACCCAAGAGACTTCCTT
TACCAATCGTCTACCTATCAACTTAGAACCAGGAGACTTCTTTTCTCAATCGCCTACCCATCAG
Found at i:1658519 original size:85 final size:85
Alignment explanation
Indices: 1658383--1658620 Score: 259
Period size: 85 Copynumber: 2.8 Consensus size: 85
1658373 CTAGACCTAG
* * *
1658383 GAGACCTTTT-CATTAATCGTCTGCCCATTGGCTTAGACC-CGAGAGACTTCCTTTATTAATCAT
1 GAGA-CTTTTCCATCAATAGTCTGCCCATTGGCTTAGACCTAG-GAGACTTCCTTTATTAATCAT
* ** *
1658446 CTGCCCT-TCGGCTTAGACCTGA
64 CT-ACCTGTCAACTTAGACCCGA
* * ** * * *
1658468 GAGACTTTTCCATCAGTTGTCTGCCTGTTGGCTTAGACCTAGGAGATTTCCTTTATCAATCGTCT
1 GAGACTTTTCCATCAATAGTCTGCCCATTGGCTTAGACCTAGGAGACTTCCTTTATTAATCATCT
1658533 ACCTGTCAACTTAGACCCGA
66 ACCTGTCAACTTAGACCCGA
* * *
1658553 GAGAGTTTTCCATCAATAGTCTACCCATTGGCTTAGA-CTCAGGAGACTTCCTTTGTTAATCATC
1 GAGACTTTTCCATCAATAGTCTGCCCATTGGCTTAGACCT-AGGAGACTTCCTTTATTAATCATC
1658617 TACC
65 TACC
1658621 GATAGACTCA
Statistics
Matches: 126, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
84 10 0.08
85 115 0.91
86 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (85 bp):
GAGACTTTTCCATCAATAGTCTGCCCATTGGCTTAGACCTAGGAGACTTCCTTTATTAATCATCT
ACCTGTCAACTTAGACCCGA
Found at i:1658641 original size:85 final size:83
Alignment explanation
Indices: 1658374--1658645 Score: 253
Period size: 85 Copynumber: 3.2 Consensus size: 83
1658364 CTCATTGGCC
* * *
1658374 TAGACCT-AGGAGACCTTTT-CATTAATCGTCTGCCCATTGGCTTAGACCCGAGAGACTTCCTTT
1 TAGACCTGA-GAGA-CTTTTCCATCAATAGTCTGCCCATTGGCTTAGACCAG-GAGACTTCCTTT
* * * *
1658437 ATTAATCATCTGCCCTTCGGCT
63 ATTAATCATCT-ACCGTAGACT
* * ** *
1658459 TAGACCTGAGAGACTTTTCCATCAGTTGTCTGCCTGTTGGCTTAGACCTAGGAGATTTCCTTTAT
1 TAGACCTGAGAGACTTTTCCATCAATAGTCTGCCCATTGGCTTAGACC-AGGAGACTTCCTTTAT
* *
1658524 CAATCGTCTACCTGTCA-ACT
65 TAATCATCTACC-GT-AGACT
* * * *
1658544 TAGACCCGAGAGAGTTTTCCATCAATAGTCTACCCATTGGCTTAGACTCAGGAGACTTCCTTTGT
1 TAGACCTGAGAGACTTTTCCATCAATAGTCTGCCCATTGGCTTAGAC-CAGGAGACTTCCTTTAT
1658609 TAATCATCTACCGATAGACT
65 TAATCATCTACCG-TAGACT
* * *
1658629 CAGAACTAAGAGACTTT
1 TAGACCTGAGAGACTTT
1658646 CTTTGTTAAT
Statistics
Matches: 150, Mismatches: 29, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
84 9 0.06
85 138 0.92
86 3 0.02
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.32
Consensus pattern (83 bp):
TAGACCTGAGAGACTTTTCCATCAATAGTCTGCCCATTGGCTTAGACCAGGAGACTTCCTTTATT
AATCATCTACCGTAGACT
Found at i:1659573 original size:211 final size:211
Alignment explanation
Indices: 1659179--1659574 Score: 467
Period size: 211 Copynumber: 1.9 Consensus size: 211
1659169 TTAGACTCGG
* * ** * *
1659179 GAGACCTTTCCATGAATTGTCTGCCTGTCGACTTAGAGCCGGGAGTCTTTTCCATCTTTTGTCTG
1 GAGACCTTTCCATCAATTGCCTGCCCATCGACTTAGACCCGGGAGACTTTTCCATCTTTTGTCTG
* * * * * ** * *
1659244 CCCGTCAGCTTAGACCTAGGAGACTTCCTTTATTAATCATTTACCCATCGGCTTAGACTCGGGAG
66 CCCGCCAGCTTAGACCGAGGAAACTTCCTTTATCAATCATCTACCCATCAACTCAGACCCGGGAG
* * * * * *
1659309 ACTTCTTTTGTCAATCGTCTGCCCGTCGGCTTTGACTTAGGAGCCTTTTCCATCATTTATCTACC
131 ACTTCATTTGCCAATCGTCTGCCCGTCAGCTTAGACTTAGGAGACTCTTCCATCATTTATCTACC
1659374 CATTGACTTAGACTAA
196 CATTGACTTAGACTAA
* *
1659390 GAGACTTTTCCATCAATTGCCTGCCCATCGACTTAGACCCGGGAGACTTTTCC-T-TTAATTGTT
1 GAGACCTTTCCATCAATTGCCTGCCCATCGACTTAGACCCGGGAGACTTTTCCATCTT--TTGTC
* * *
1659453 TGCCCGCCAGCTTAGACCCGA-GAAACTTCTTTTGTCAATCGTCTACCCATCAACTCAGACCCGG
64 TGCCCGCCAGCTTAGA-CCGAGGAAACTTCCTTTATCAATCATCTACCCATCAACTCAGACCCGG
* * *
1659517 GAGACTTCATTTGCCAATCGTCTTCCCGTCAGCTTAGA-TTCAGTATACTCTTCCATCA
128 GAGACTTCATTTGCCAATCGTCTGCCCGTCAGCTTAGACTT-AGGAGACTCTTCCATCA
1659575 ATCATCTGCC
Statistics
Matches: 152, Mismatches: 29, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
209 2 0.01
210 3 0.02
211 144 0.95
212 3 0.02
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.33
Consensus pattern (211 bp):
GAGACCTTTCCATCAATTGCCTGCCCATCGACTTAGACCCGGGAGACTTTTCCATCTTTTGTCTG
CCCGCCAGCTTAGACCGAGGAAACTTCCTTTATCAATCATCTACCCATCAACTCAGACCCGGGAG
ACTTCATTTGCCAATCGTCTGCCCGTCAGCTTAGACTTAGGAGACTCTTCCATCATTTATCTACC
CATTGACTTAGACTAA
Found at i:1660398 original size:86 final size:86
Alignment explanation
Indices: 1660246--1660412 Score: 199
Period size: 86 Copynumber: 1.9 Consensus size: 86
1660236 AGACTTTTCC
* ** *
1660246 ATCAATTGTCTACCCGTCGGTTTAGACCTAGGAGACTTCCTTTATTAATAGCCTACCCATCGGCT
1 ATCAATCGTCTACCCGTCGAATTAGACCTAGGAGACTTCCTTTATTAATAGCCTACCCATCAGCT
*
1660311 TAGACCCAGGAGACTTCCTTT
66 TAGACCCAGGAAACTTCCTTT
* * ** * * * * *
1660332 ATCAATCGTCTGCCCGTCGAATTAGAGCTAGGAGACTTTTTTTATTTATCGTCTGCCCGTCAGCT
1 ATCAATCGTCTACCCGTCGAATTAGACCTAGGAGACTTCCTTTATTAATAGCCTACCCATCAGCT
*
1660397 TAGACCTAGGAAACTT
66 TAGACCCAGGAAACTT
1660413 TTCCATGAAT
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
86 66 1.00
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (86 bp):
ATCAATCGTCTACCCGTCGAATTAGACCTAGGAGACTTCCTTTATTAATAGCCTACCCATCAGCT
TAGACCCAGGAAACTTCCTTT
Found at i:1661796 original size:337 final size:337
Alignment explanation
Indices: 1661379--1662015 Score: 890
Period size: 337 Copynumber: 1.9 Consensus size: 337
1661369 TTAGACCCGT
* ** *
1661379 GAGACTTCTCCATCCATTATCTGCCCATCGGCTTAGACCTGGGAGACTTCATTTGTCAATCGTCT
1 GAGACTTCTCCATCCATTACCTGCCCATCGGCTTAGACCTAAGAGACTTCATTTATCAATCGTCT
* * *
1661444 CTCCATCAGCTTAGACTCGAGAGACTTTTTCATCAATCGTCTACCCGTCGTCTTAGACCC-GAGA
66 CTCCATCAGCTTAGACTCGAGAGACTTTTTCATCAATCATCTACCCATCGACTTAGACCCAG-GA
*
1661508 GACCTTTTCATCAATTCGTTTGCCCTTCGGCTTAGACCTAGACACTTTTCCATCAATCATTTGCC
130 GACCTTTTCATCAA-TCGTTTGCCCGTCGGCTTAGACCTAGACACTTTTCCATCAATCATTTGCC
** * * *
1661573 CATTGACTTAGAC-CGATAGAGTTTTCCATCAATCGTCTT-CCTCTCAGCTTAGACCTAGGAGAC
194 CATCAACTTAGACTCGAGAGAGTTTTCCATCAATCATCTTCCCT-TCAGCCTAGACCTAGGAGAC
*
1661636 TTCTTTTGTCAATCATCTACCCATCGGCTTAGTCC-GAAGAGACTTGATATATCAATCGTCTACC
258 TTCCTTTGTCAATCATCTACCCATCGGCTTAGTCCTG-AGAGACTTGATATATCAATCGTCTACC
1661700 CATCGGCTTAGCCTTG
322 CATCGGCTTAGCCTTG
* ** **
1661716 GAGACTTTTCCATCCATTACCTGCCTGTCGGCTTAGACCTAAGAGACTTTGTTTATCAATCGTCT
1 GAGACTTCTCCATCCATTACCTGCCCATCGGCTTAGACCTAAGAGACTTCATTTATCAATCGTCT
* * *
1661781 GCT-CGTC-GACTTAGACTCGAGAGACTTTTTCATCAATCATCTGCCTATCGACTTAGACCCAGG
66 -CTCCATCAG-CTTAGACTCGAGAGACTTTTTCATCAATCATCTACCCATCGACTTAGACCCAGG
* * ** *
1661844 AGACCTTTTCATCAATCGTTTGCCCGTCGGCTTAGACCTAGAGACTTTTCCATTAATTGTTTGCT
129 AGACCTTTTCATCAATCGTTTGCCCGTCGGCTTAGACCTAGACACTTTTCCATCAATCATTTGCC
* **
1661909 CATCAACTTAGACTCGAGAGAGTTTTCCATCAATCATTTTCCCTTTGGCCTAGACCTAGGAGACT
194 CATCAACTTAGACTCGAGAGAGTTTTCCATCAATCATCTTCCCTTCAGCCTAGACCTAGGAGACT
* *
1661974 TCCTTTGTCAATCGTCTGCCCATCGGCTTAGTCCTGAGAGAC
259 TCCTTTGTCAATCATCTACCCATCGGCTTAGTCCTGAGAGAC
1662016 ATCCTTTATC
Statistics
Matches: 262, Mismatches: 32, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
336 56 0.21
337 199 0.76
338 7 0.03
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.33
Consensus pattern (337 bp):
GAGACTTCTCCATCCATTACCTGCCCATCGGCTTAGACCTAAGAGACTTCATTTATCAATCGTCT
CTCCATCAGCTTAGACTCGAGAGACTTTTTCATCAATCATCTACCCATCGACTTAGACCCAGGAG
ACCTTTTCATCAATCGTTTGCCCGTCGGCTTAGACCTAGACACTTTTCCATCAATCATTTGCCCA
TCAACTTAGACTCGAGAGAGTTTTCCATCAATCATCTTCCCTTCAGCCTAGACCTAGGAGACTTC
CTTTGTCAATCATCTACCCATCGGCTTAGTCCTGAGAGACTTGATATATCAATCGTCTACCCATC
GGCTTAGCCTTG
Found at i:1661963 original size:125 final size:127
Alignment explanation
Indices: 1661736--1662015 Score: 307
Period size: 125 Copynumber: 2.2 Consensus size: 127
1661726 CATCCATTAC
* ** * *
1661736 CTGCCTGTCGGCTTAGACCTAAGAGACTTTGTTTATCAATCGTCTGCTCGTCGACTTAGACTCGA
1 CTGCCCGTCGGCTTAGACCTAAGAGACTTTGTCCATCAATCGTCTGCTCATCAACTTAGACTCGA
* * *
1661801 GAGACTTTTTCATCAATCATCTGCCTATCGACTTAGACCCAGGAGACCTT-TTCATCAATCGT
66 GAGACTTTTCCATCAATCATCTCCCTATCGACCTAGACCCAGGAGA-CTTCTTCATCAATCGT
* * * *
1661863 TTGCCCGTCGGCTTAGACCT-AGAGACTTT-TCCATTAATTGTTTGCTCATCAACTTAGACTCGA
1 CTGCCCGTCGGCTTAGACCTAAGAGACTTTGTCCATCAATCGTCTGCTCATCAACTTAGACTCGA
* * * * * **
1661926 GAGAGTTTTCCATCAATCATTTTCCCT-TTGGCCTAGACCTAGGAGACTTCCTTTGTCAATCGT
66 GAGACTTTTCCATCAATCA-TCTCCCTATCGACCTAGACCCAGGAGACTT-CTTCATCAATCGT
* * *
1661989 CTGCCCATCGGCTTAGTCCTGAGAGAC
1 CTGCCCGTCGGCTTAGACCTAAGAGAC
1662016 ATCCTTTATC
Statistics
Matches: 127, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
124 3 0.02
125 59 0.46
126 41 0.32
127 24 0.19
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.33
Consensus pattern (127 bp):
CTGCCCGTCGGCTTAGACCTAAGAGACTTTGTCCATCAATCGTCTGCTCATCAACTTAGACTCGA
GAGACTTTTCCATCAATCATCTCCCTATCGACCTAGACCCAGGAGACTTCTTCATCAATCGT
Found at i:1662727 original size:82 final size:83
Alignment explanation
Indices: 1662633--1662790 Score: 192
Period size: 86 Copynumber: 1.9 Consensus size: 83
1662623 CTTTTGTTCG
* * * * * * * **
1662633 TCAGTTTAAACCTGGGAGA-CTTTGTCAATCGTTTACCTGTCGACTTAGTCTCGGGAGACTTTTT
1 TCAGCTTAAACCTGAGAGACCTTTATCAATCGTTTACCTATCAACTTAGACCCGGGAGACTTCCT
1662697 TTGTCAATTATCTATCCA
66 TTGTCAATTATCTATCCA
*
1662715 TCAGCTTAAACCTGAGAGACTTCCTTTATCAATCTTTTACCTATCAACTTAGACCCGGGAGACTT
1 TCAGCTTAAACCTGAGAGA---CCTTTATCAATCGTTTACCTATCAACTTAGACCCGGGAGACTT
1662780 CCTTTGTCAAT
63 CCTTTGTCAAT
1662791 CGTTTGCCTG
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
82 17 0.27
86 45 0.73
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (83 bp):
TCAGCTTAAACCTGAGAGACCTTTATCAATCGTTTACCTATCAACTTAGACCCGGGAGACTTCCT
TTGTCAATTATCTATCCA
Found at i:1662967 original size:86 final size:85
Alignment explanation
Indices: 1662842--1663002 Score: 223
Period size: 86 Copynumber: 1.9 Consensus size: 85
1662832 TCGTATACTT
* * * * *
1662842 ATCAACTTAGACCTAAGAGATTTTTCCATCAATCATCTACCAATCGGCTTAGACCCGAGAAACTT
1 ATCAACTCAAACCCAAGAGATTCTTCCATCAATCATCTACCAATCGGCTTAGACCCAAGAAACTT
*
1662907 CTTTTGTTAATCATCTGCTC
66 CTTTTCTTAATCATCTGCTC
* * * *
1662927 ATCAACTCAAACCCAAGAGACTTCTTCTATCAATCATCTACCTATCGGCTTAGACCCAAGAGATT
1 ATCAACTCAAACCCAAGAGA-TTCTTCCATCAATCATCTACCAATCGGCTTAGACCCAAGAAACT
1662992 TCTTTTCTTAA
65 TCTTTTCTTAA
1663003 CCGTCTGCCT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 17 0.26
86 48 0.74
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32
Consensus pattern (85 bp):
ATCAACTCAAACCCAAGAGATTCTTCCATCAATCATCTACCAATCGGCTTAGACCCAAGAAACTT
CTTTTCTTAATCATCTGCTC
Found at i:1663744 original size:382 final size:381
Alignment explanation
Indices: 1662932--1663884 Score: 849
Period size: 382 Copynumber: 2.5 Consensus size: 381
1662922 TGCTCATCAA
* * * * *
1662932 CTCAAACCCAAGAGACTT-CTTCTATCAATCATCTACCTATCGGCTTAGACCCAAGAGATTTCTT
1 CTCAGACCCAAGAGACTTCCTT-TATCAACCATCTACCCATCGGCTTAGACCCGAGAGA-CT-TT
* * * * * * *
1662996 TTC-TTAACCGTCTGCCTATCGACTTAG-ACCTGAGAA-ACTTTTCCATCAATTGTCTACCTTTC
63 TTCATCAATCATCTGCCCATCGACTCAGAACC--AGAAGACTTTTCCATCAATCGTCTACCTATC
* * * *
1663058 GACTTAGACTCGAGAGACTTTTCCATTAATCGTCTACGCGT-T-GGCTTAGACCTGGGAGACTTC
126 GACTTAGGCTCGAGAGACTTTTCCATCAATCGTCT--GCCTATCGGCTTAGACCCGGGAGACTTC
* * * ** *
1663121 TCCATCCATTATCTGCCCGTCGGCTTAGACTTGGGAGACTTTGTTTGTCAATCATCTACCCATTG
189 TCCATCCATTATCTGCCCGTCAGCTTAGACTTGGAAAACTTCATTTGTCAATCATCTACCCATCG
* * * * * * *
1663186 GCTTAGAACTGGAAGACTTTCTTTGTCAATCGTCTGCTTATCGGCTTAGACTCGAGAGAGTTTTC
254 GCATAGAACTGAAAGACTTTCATTGTCAATCGTCTGCTCATCGGCTTAGACCCGAGAGACTTCTC
* * * * *
1663251 CATCAATAGTCTACCCATCGGCTTAGACTTAGGACATTTCTTTCATCAATTATTTGCCTATCTG
319 CATCAATAGTCAACCCATCAGCTTAGACTGAGGACA-TTCTTTCATCAATTATCTGCCCATCTG
* * * ** * ** *
1663315 CTCAGACCCAAGAGACTTCCTTTGTTAATCATCTACCTGTTGGCTTAGACTTGGGAGACTTCTTT
1 CTCAGACCCAAGAGACTTCCTTTATCAACCATCTACCCATCGGCTTAGACCCGAGAGAC-T-TTT
* * *
1663380 TC-TCAATCGTTTGCCCATCTG-CTTA-AACCAGAAGACTTTTCCATCAATCGTCTACCTATCGA
64 TCATCAATCATCTGCCCATC-GACTCAGAACCAGAAGACTTTTCCATCAATCGTCTACCTATCGA
* * *
1663442 CTTAGGCTCAAGAGACTTTTCCATCAATCGTCTGCCTATCGGCTTAGACCCGGGAGACTTTTTCA
128 CTTAGGCTCGAGAGACTTTTCCATCAATCGTCTGCCTATCGGCTTAGACCCGGGAGACTTCTCCA
* * * *
1663507 TCCATTATCTGTCCGTCAGCTTAGACTTGGAAAACTTCATTTGTCAATCGTCTGCCCGTCGGCAT
193 TCCATTATCTGCCCGTCAGCTTAGACTTGGAAAACTTCATTTGTCAATCATCTACCCATCGGCAT
* * * * *
1663572 AG-ACTTAAGAGACTTTCATTGTCAATCGTTTGCTCATTGGCTTAGTCCC-AGGAGACTTCCTCT
258 AGAACTGAA-AGACTTTCATTGTCAATCGTCTGCTCATCGGCTTAGACCCGA-GAGACTT-CTCC
* * * * * *
1663635 ATCGATCA-TCAACTCGTCAGCTTAGACTCGAGAGAC-TTC-TTCATCCATTGTCTGCCCGT-TA
320 ATCAAT-AGTCAACCCATCAGCTTAGACT-GAG-GACATTCTTTCATCAATTATCTGCCCATCT-
1663696 G
381 G
* * *** * * *
1663697 CTTAGTCTTGAGAGGCTTCCTTTATCAACCCTCTGCCCATCGGCTTAGACCCGAGAGACTTTTTC
1 CTCAGACCCAAGAGACTTCCTTTATCAACCATCTACCCATCGGCTTAGACCCGAGAGACTTTTTC
* * * * * *
1663762 ATCAATCATCTGCCCGTCGACTCAGACCCGGGAGACCTTTCTATCAATCGTCTACCTATCGACTT
66 ATCAATCATCTGCCCATCGACTCAGAACCAGAAGACTTTTCCATCAATCGTCTACCTATCGACTT
** * * ** **
1663827 AGAG-TCGAGAGACTTTTCCATCTTTTGTCTGCCCATCAACTTAGACCCGAAAGACTTC
131 AG-GCTCGAGAGACTTTTCCATCAATCGTCTGCCTATCGGCTTAGACCCGGGAGACTTC
1663885 CTTTATCATT
Statistics
Matches: 460, Mismatches: 92, Indels: 37
0.78 0.16 0.06
Matches are distributed among these distances:
380 9 0.02
381 29 0.06
382 313 0.68
383 99 0.22
384 7 0.02
385 3 0.01
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (381 bp):
CTCAGACCCAAGAGACTTCCTTTATCAACCATCTACCCATCGGCTTAGACCCGAGAGACTTTTTC
ATCAATCATCTGCCCATCGACTCAGAACCAGAAGACTTTTCCATCAATCGTCTACCTATCGACTT
AGGCTCGAGAGACTTTTCCATCAATCGTCTGCCTATCGGCTTAGACCCGGGAGACTTCTCCATCC
ATTATCTGCCCGTCAGCTTAGACTTGGAAAACTTCATTTGTCAATCATCTACCCATCGGCATAGA
ACTGAAAGACTTTCATTGTCAATCGTCTGCTCATCGGCTTAGACCCGAGAGACTTCTCCATCAAT
AGTCAACCCATCAGCTTAGACTGAGGACATTCTTTCATCAATTATCTGCCCATCTG
Found at i:1664974 original size:42 final size:42
Alignment explanation
Indices: 1661323--1673687 Score: 1008
Period size: 42 Copynumber: 292.1 Consensus size: 42
1661313 TTATTTACCT
* *
1661323 TCGACTTAGACTCGGGAGA-TTTTCCATCAATCATTTGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1661364 TC-AGCTTAGACCCGTGAGACTTCTCCATCCATTATCTGCCCA
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * *
1661406 TCGGCTTAGAC-CTGGGAGACTTCATTT-GTCAATCGTCT-CTCCA
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGC-CCA
* * * *
1661449 TC-AGCTTAGACTCGAGAGACTTTTTCATCAATCGTCTACCCG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1661491 TCGTCTTAGACCCGAGAGACCTTTTCATCAATTCGTTTGCCCT
1 TCGACTTAGACTCGGGAGACTTTTTCATCAA-TCATCTGCCCA
* ** * * *
1661534 TCGGCTTAGAC-CTAGACACTTTTCCATCAATCATTTGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * * * *
1661575 TTGACTTAGAC-CGATAGAGTTTTCCATCAATCGTCTTCCTC-
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCC-CA
* ** *
1661616 TC-AGCTTAGAC-CTAGGAGACTTCTTTTGTCAATCATCTACCCA
1 TCGA-CTTAGACTC-GGGAGACTT-TTTCATCAATCATCTGCCCA
* * * * * *
1661659 TCGGCTTAGTC-CGAAGAGACTTGATAT-ATCAATCGTCTACCCA
1 TCGACTTAGACTCG-GGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * * * **
1661702 TCGGCTTAGCCT-TGGAGACTTTTCCATCCATTACCTGCCTG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * * * *
1661743 TCGGCTTAGAC-CTAAGAGACTTTGTTTATCAATCGTCTGCTCG
1 TCGACTTAGACTC-GGGAGACTTT-TTCATCAATCATCTGCCCA
* *
1661786 TCGACTTAGACTCGAGAGACTTTTTCATCAATCATCTGCCTA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1661828 TCGACTTAGACCCAGGAGACCTTTTCATCAATCGTTTGCCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * * ** * *
1661870 TCGGCTTAGAC-CTAGAGACTTTTCCATTAATTGTTTGCTCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1661911 TCAACTTAGACTCGAGAGAGTTTTCCATCAATCATTTTCCCT
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1661953 TTGGCCTAGAC-CTAGGAGACTTCCTTT-GTCAATCGTCTGCCCA
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * *
1661996 TCGGCTTAGTC-CTGAGAGACATCCTTTATCAATC-ATCATCTGCCCG
1 TCGACTTAGACTC-GGGAGAC-T--TTT-TC-ATCAATCATCTGCCCA
* * * * ** * **
1662042 TC-AGCTTATAATCGGGAGACTTCTTCA-CCATTGTTTGCCTG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1662083 T-TAGCTTAGTCTTGGGTGACTTCCTTT-ATCAACCCTCTACCCA
1 TCGA-CTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * *
1662126 TCGGCTTAGACTTGGGAGACTTTTTCATCAATCGTTTGCTCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1662168 TC-AGCTTAGAC-CTGAGAGACCTTTCCATCAATCGTCTACCTA
1 TCGA-CTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* *** * * *
1662210 -CTGGCTTAGAC-CTAATAGACTTTTCCATCAATCGTCTACCCA
1 TC-GACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1662252 TCGGCTTAGACCCAGAAGACTTCTTTTATCAATCATCTACCCA
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * * * *
1662295 T-TAGCTTAGACTCGGGAGACTTTGTTTATTAATCATTTGCCTA
1 TCGA-CTTAGACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* * ** ** ** * *
1662338 TCGGCTTAGACCCAAGAGACTTTTTTTGTCAATTGTTTGCCCG
1 TCGACTTAGACTCGGGAGAC-TTTTTCATCAATCATCTGCCCA
* * * * *
1662381 TCAACTTAGACTCGAGAGACTTTTCCATCAATCATCTGCTCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *** ** * *
1662423 TTGGCTTATACCCAGAAGACTTCTTT-ATTTTTTGTCTACCCG
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* ** * ** * *
1662465 TCGGCTTAGAGC-CGAAAGACTTTTTCATTAATTGTCTGCTCG
1 TCGACTTAGA-CTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * ** * ***
1662507 T-TAGCTTAGA-TTGAGGAGACTTTTTCATTAATTGTCTACTTG
1 TCGA-CTTAGACTCG-GGAGACTTTTTCATCAATCATCTGCCCA
* *
1662549 TCGACTTAGACTCGGGAGACTTTTCCATCAATCGA-C-GTCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATC-ATCTGCCCA
* * * * * * ** *
1662590 TC-AGCTTAGACCCGAGAGAATTCCTTT-ATTAATCTTTTGTTCG
1 TCGA-CTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * * **
1662633 TC-AGTTTAAAC-CTGGGAGAC--TTT-GTCAATCGTTTACCTG
1 TCGA-CTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* ** * **
1662672 TCGACTTAGTCTCGGGAGACTTTTTTTGTCAATTATCTATCCA
1 TCGACTTAGACTCGGGAGAC-TTTTTCATCAATCATCTGCCCA
* * * * * *
1662715 TC-AGCTTAAAC-CTGAGAGACTTCCTTT-ATCAATCTTTTACCTA
1 TCGA-CTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * **
1662758 TCAACTTAGACCCGGGAGACTTCCTTT-GTCAATCGTTTGCCTG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * * * * * **
1662801 TAGGCTTAGA-TCCAGTAGACTCTTCCATCAATCGTATACTTA
1 TCGACTTAGACT-CGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * *
1662843 TCAACTTAGAC-CTAAGAGA-TTTTTCCATCAATCATCTACCAA
1 TCGACTTAGACTC-GGGAGACTTTTT-CATCAATCATCTGCCCA
* * * * ** * *
1662885 TCGGCTTAGACCCGAGAAACTTCTTTTGTTAATCATCTGCTCA
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * * * ** * * *
1662928 TCAACTCAAACCCAAGAGACTTCTTCTATCAATCATCTACCTA
1 TCGACTTAGACTCGGGAGACTTTTTC-ATCAATCATCTGCCCA
* * ** * * * * *
1662971 TCGGCTTAGACCCAAGAGATTTCTTTTC-TTAACCGTCTGCCTA
1 TCGACTTAGACTCGGGAGA-CT-TTTTCATCAATCATCTGCCCA
* * * ** * **
1663014 TCGACTTAGAC-CTGAGAAACTTTTCCATCAATTGTCTACCTT
1 TCGACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1663056 TCGACTTAGACTCGAGAGACTTTTCCATTAATCGTCTACGCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1663098 TTGGCTTAGAC-CTGGGAGACTTCTCCATCCATTATCTGCCCG
1 TCGACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * ** *
1663140 TCGGCTTAGACTTGGGAGACTTTGTTTGTCAATCATCTACCCA
1 TCGACTTAGACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* * * ** * **
1663183 TTGGCTTAGAACT-GGAAGACTTTCTTTGTCAATCGTCTGCTTA
1 TCGACTTAG-ACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* * * * *
1663226 TCGGCTTAGACTCGAGAGAGTTTTCCATCAAT-AGTCTACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCA-TCTGCCCA
* ** * * * * *
1663268 TCGGCTTAGACTTAGGACATTTCTTTCATCAATTATTTGCCTA
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * ** * * * **
1663311 TCTG-CTCAGACCCAAGAGACTTCCTTT-GTTAATCATCTACCTG
1 TC-GACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * *
1663354 TTGGCTTAGACTTGGGAGACTTCTTTTC-TCAATCGTTTGCCCA
1 TCGACTTAGACTCGGGAGAC-T-TTTTCATCAATCATCTGCCCA
* * * * * * *
1663397 TCTG-CTTAAAC-CAGAAGACTTTTCCATCAATCGTCTACCTA
1 TC-GACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * * *
1663438 TCGACTTAGGCTCAAGAGACTTTTCCATCAATCGTCTGCCTA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1663480 TCGGCTTAGACCCGGGAGACTTTTTCATCCATTATCTGTCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1663522 TC-AGCTTAGACTTGGAAAACTTCATTT-GTCAATCGTCTGCCCG
1 TCGA-CTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * *** * * * *
1663565 TCGGCATAGACTTAAGAGACTTTCATT-GTCAATCGTTTGCTCA
1 TCGACTTAGACTCGGGAGACTTT--TTCATCAATCATCTGCCCA
* * * * * ** * ** * *
1663608 TTGGCTTAGTCCCAGGAGACTTCCTCTATCGATCATCAACTCG
1 TCGACTTAGACTCGGGAGACTTTTTC-ATCAATCATCTGCCCA
* * * ** *
1663651 TC-AGCTTAGACTCGAGAGACTTCTTCATCCATTGTCTGCCCG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1663693 T-TAGCTTAGTCTTGAGAGGCTTCCTTT-ATCAACCCTCTGCCCA
1 TCGA-CTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * *
1663736 TCGGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1663778 TCGACTCAGACCCGGGAGAC-CTTTCTATCAATCGTCTACCTA
1 TCGACTTAGACTCGGGAGACTTTTTC-ATCAATCATCTGCCCA
* * * ** **
1663820 TCGACTTAGAGTCGAGAGACTTTTCCATCTTTTGTCTGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** *
1663862 TCAACTTAGACCCGAAAGACTTCCTTT-ATCATTCA-CTTGCCCA
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATC-TGCCCA
* * ** * * * **
1663905 TTGGCTTAGAC-CTAAGAGACTTCCTTT-ATTAATCGTTTGCTTA
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * *
1663948 TCGACTTAGACCCGGGAGACTTCTTCTGTCAATCATCTGCCCG
1 TCGACTTAGACTCGGGAGACTTTTTC-ATCAATCATCTGCCCA
* * * * * * *
1663991 TCGGCTTAGAC-CTAGGACACTTTTCCATCAATCGTCTACCCG
1 TCGACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * * ** *
1664033 TTGACTAAGACTCGAGAGACTTTTTCATCAATCGCCTACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1664075 TCGGCTTAGA-TCCGAGAGACTTTTCCTTCAATCGTCTACCTA
1 TCGACTTAGACT-CGGGAGACTTTTTCATCAATCATCTGCCCA
* * * *
1664117 TCGGA-TTAGAC-CTGAGAAACTTCCTTT-GTCAATCATCTACCCA
1 TC-GACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * *
1664160 T-TAGCTTGGACCCAGGAGACTTCCTTTGC--CAACCATCTGCCCG
1 TCGA-CTTAGACTCGGGAGACTT--TTT-CATCAATCATCTGCCCA
* * * ** **
1664203 TC-AGCTTAGATTCGGTAGA-TTCTTCCATCAATCATCAACCTG
1 TCGA-CTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * * * *
1664245 TC-AGCTTAGACTTGGGAGACTTTTCCATCAATCATTTGCTCG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * ** * *
1664287 TC-AGTTTAGACCCGAGAGACTTTCTTTGTCAATTATTTGCCCA
1 TCGA-CTTAGACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* * * * * ** *
1664330 TCGACTCAAACCCGAGAGACTTCCTTT-GTCAATTGTCTGCCAA
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * ***
1664373 TCGGCTTAGACTTGGGAGATTTCTTTTC-TCAATCGTCTGCATG
1 TCGACTTAGACTCGGGAGA-CT-TTTTCATCAATCATCTGCCCA
* * * * * * *
1664416 TCGACTTAGACTTGGGAGACTTTTTTATGAATCGTTTACCTA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *
1664458 TTGACTTAGGCTCGAGAGACTTTATCATCAAT-AGTTTGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCA-TCTGCCCA
* ** * * * *
1664500 TCGGCTTAGACTCGAAAGACTTCTTCATCCATTATCTACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** * * * * **
1664542 -CCAGCTTAGAC-CTAGGAGACTTTGTTTGTTAATCGTTTACCTG
1 TCGA-CTTAGACTC-GGGAGACTTT-TTCATCAATCATCTGCCCA
* * *
1664585 TCGGCTTAGACTCAGGAGACTTCTTCATCAATCATCTGCCC-
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1664626 TCCAGCTTAGACTTGGGAGACCTTTCCATTAATCATCTACCCG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * ** *
1664669 TC-AGCCTAAACTC-GGAGACTTTTCCACCAATTGTCTACCCA
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *** * * * *
1664710 CCAACTTAAACCCAAAACAGTTTTCCATCAATCATCTGCCCC
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** ** * * * *
1664752 TCGGCTTAGACCCAAGAGACTTTCTTTGTCAATCGTTTACCCG
1 TCGACTTAGACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* * * * * * *
1664795 TCGGCTTAGTCCCAGGAGACTTCTTTTATCAATCATCAGCCCG
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * * * * ** *
1664838 TTGACTTAAACCCGGGAGACTTCTTCATCCATTGTCTGCCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1664880 T-TAGCTTAGTCTTGGGAGACTTCCTTT-ATCAACCCTCT-ACCA
1 TCGA-CTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * *
1664922 TCGGCGTAGACTTGGGAGACTTTTTCATCAATCATCTGCCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * ** * ***
1664964 TCGACTTAGACTAGGGAGAAC-TTTCCATTAATTGTCTACTTG
1 TCGACTTAGACTCGGGAG-ACTTTTTCATCAATCATCTGCCCA
* * * ** * * * *
1665006 TC-AGTTTAGAGTTGCAAGACTTTTCCATCAATCGTCTACCCG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * ** * ** * *
1665048 TTGGCTTAGACCCAAGAGACTTCCTTT-ATTAATCGCCTACCCG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * ** *
1665091 TCGGCTTAGACCCAAGAGACTTCCTTT-ATCAATCATCTGCCCG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
** ** * *
1665134 TCGACTTAGAC-CTAAGAGACTTTTTTTTGTCAATCGTCTGCCCT
1 TCGACTTAGACTC-GGGAGAC--TTTTTCATCAATCATCTGCCCA
* * * * * * *
1665178 TCGGCTTAGAC-CTGAGAAACTTTTCCATCAATCGTCT-ACTA
1 TCGACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * **
1665219 GTTGACTTGGACTCGAGAGACTTTTCCATCAATCACCTGCCTG
1 -TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *** * * * * * *
1665262 TAGGCTTTGACCCAAAAAACTCTTCCTTCAATCGTTTGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1665304 TTGATTTAGACTCAGGAAACTTCCTTT-GTCAATCATCTTCCTA
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * * * *
1665347 TTGGCTCAGACCCGGGAGACTTCTTTTATTAATCATTTGCCCG
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * * * ** ** * * *
1665390 TCGGCTTAAAC-CTAGAAGACTTTCTTTGTCAATTGTTTGCTCG
1 TCGACTTAGACTC-GGGAGACTTT-TTCATCAATCATCTGCCCA
* * * * *
1665433 TCGGCTTAGACAT-GGGAAACTTTTCCATCAATCGTCTGCCTA
1 TCGACTTAGAC-TCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *** * *
1665475 TTGGCTCAGACCCGGGAGACTTCTTT-ATTTTTCGTCTACCCA
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* *
1665517 TC-AGCTTAGACTCGGGAGACTTTTTCCTCAATCATCTGCCCG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * * ** *
1665559 T-TAGCTTAGACTCATGAGACTTTTCCATTAATTGTCTACCCA
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
*
1665601 TC-AGCTTAGACTCGGGAGA-TTTTTCTATCAATCGA--TGCCTA
1 TCGA-CTTAGACTCGGGAGACTTTTTC-ATCAATC-ATCTGCCCA
* *** * * * ***
1665642 TCGGCTTAGACTTAAGAGAATTCCCTT-GTCAATCATCTATTCA
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * * * * **
1665685 TTGGCTCA-ATCTCGAGAGACTTCTTTTATCAATCGTTTACCTG
1 TCGACTTAGA-CTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * ** * * * *
1665728 TCGACTTAGTCTTGGGAGACTTTTTTTGTTAATTATTTTCCCA
1 TCGACTTAGACTCGGGAGAC-TTTTTCATCAATCATCTGCCCA
* ** * *
1665771 TCGACTCAGACTCACGAGACTTTCTTTATCAATCGTCTGCCCA
1 TCGACTTAGACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* ** * ** * **
1665814 TCGACTTAAACTCGAAAGACTTCCTTT-GTCAATTGTTTGCCTG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * *
1665857 TCTACTTAGA-TCTGGTAGACTCTTCCATCAATCGTCTGCCTA
1 TCGACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * ** * *
1665899 TTGACTTAGACCCGAGAGACTTTTCCATTAATTGTCTACCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * *
1665941 TC-AGCTTAGACCCGAGAGACTTTCTTTC-TCAATCATCTGCTCG
1 TCGA-CTTAGACTCGGGAGAC-TT-TTTCATCAATCATCTGCCCA
* * * * * * ** ** *
1665984 TCGGCTCAAACCCGAGAGACTTTCTTCGTCAATTGTCTATCTA
1 TCGACTTAGACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* ** * *
1666027 TCGGCTTAGAC-CTGAAAGACTTCATTTC-TCAATCCTCTGCCCG
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* ** * * ** * *
1666070 TCGGCTTAGAC-CTTAGAAACTTTTTCATAAATTGTCTACCCT
1 TCGACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
*
1666112 TTGACTTA-ACCTCGGGAGACTTTTTCATCAATCATCTGCCCA
1 TCGACTTAGA-CTCGGGAGACTTTTTCATCAATCATCTGCCCA
** * * * * * ***
1666154 TCGGTTTAGAC-CAAGGAGAC-TTCTCTGTCCATTATCTGGTTA
1 TCGACTTAGACTC-GGGAGACTTTTTC-ATCAATCATCTGCCCA
* * *
1666196 TC-AGCTTAGAC-CTGGGAGACTTCGTTT-GTCAATCGTCTCCCCA
1 TCGA-CTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * * *
1666239 TTTG-CTTAGAATCGAGAGACCTTTTCATCAATCGTCTACCCG
1 -TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** *
1666281 TCGACTTAGAC-CTGGGTA-ACCTTTCCATCAATTGTCTGCCCG
1 TCGACTTAGACTC-GGG-AGACTTTTTCATCAATCATCTGCCCA
* ** * * *
1666323 TCGGCTTAGAC-CTAGAGAC-TTTTCTATCAATCGTTTGCCCG
1 TCGACTTAGACTCGGGAGACTTTTTC-ATCAATCATCTGCCCA
* * * * *
1666364 TCGACTTAGACCCGGGAGAGTTTTCCATCAATCATTTGCCCT
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1666406 TTGGCTTAGGC-CTAGGAGACTTCCTTT-TTCAATCGTCTGCCCA
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * **
1666449 T-TAGCTTAGTC-CAAGGAGACTTCATTT-ATCAATTGTCTGCCCA
1 TCGA-CTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * *** * * * *
1666492 TC-AGCTTAGACCCGAGAGACTTCCCCATCCATTATCTGTCCG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** ** * **
1666534 TCGGCTTAGAC-CTAGGAGACTTTGTTTGTCAATTGTCTACCTG
1 TCGACTTAGACTC-GGGAGACTTT-TTCATCAATCATCTGCCCA
* * * * * **
1666577 TTGGCTTAGACTC-AGAGACTTTTTCATAAATCATCTACCTG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * ** * *
1666618 TCGACTTATACTTGGGAGACCTTTCCATCAATTGTTTGCCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * **
1666660 TCGGCTTAGAC-CTGGAGACTTTTCCATCAATCGT-TTTCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1666700 GTCGACTTAGACCCGGGAGAGTTTTCCATCAAACGTCTGCCCG
1 -TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** ** * *
1666743 TTGTCTTAGACCTC-ATAGACTTCTTTTGTCAATCGTTTGCCCA
1 TCGACTTAGA-CTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * * * * *
1666786 TCGGCTTAGTC-CGAAGAGACTTCATTT-ATCAATCGTCTTCCCG
1 TCGACTTAGACTCG-GGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * *
1666829 TCGGCTTAGAC-CTTGGAGA-TCTCTCCATCCATTATCTGCCCA
1 TCGACTTAGACTC-GGGAGACT-TTTTCATCAATCATCTGCCCA
* * * ** * ** *
1666871 TTGGCTTAGAC-CTAGGAGACTTTGTTTGTCAATCGTCTAACCG
1 TCGACTTAGACTC-GGGAGACTTT-TTCATCAATCATCTGCCCA
* * * * *
1666914 TCAACTTAGACTTGAGAGACTTTTTCATCAATCGTCTACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1666956 TCGGCTTAGACT-GATGATACCTTTTCATCAATCGTCTGCTCA
1 TCGACTTAGACTCG-GGAGACTTTTTCATCAATCATCTGCCCA
* ** * * * **
1666998 TCGGCTTAGAC-CTAGAGACTTTTCCATCAATCGTTTGCCTG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1667039 TCGACTTAGACCCAGGAGAGTTTTTCATCAATTATCTTCCCC
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** **
1667081 TCGGCTTAGAC-CTAGGAGACTTTTTGTGTCAATTGTCTGCCCA
1 TCGACTTAGACTC-GGGAGACTTTTT-CATCAATCATCTGCCCA
* * * ** * *
1667124 TCGACTTAGTCTCGGGACACTTCCTTT-ATTAATTGTCTGTCCG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * ** *
1667167 TC-AGCTTAGAATCGAGAGACTTCTTCATCCATTGTCTGCCCG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1667209 T-TAGCTTAGTC-CTGGGAGACTTCCTTTAATGATTCCTCTGCCTA
1 TCGA-CTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
** * *
1667253 TCGGTTTAGACT-GGAAAGACTTTTTCATCAATCATCTGCCCG
1 TCGACTTAGACTCGG-GAGACTTTTTCATCAATCATCTGCCCA
* * * ** ***
1667295 TCGGCTTAGACTCGAGAGACCTTTTCATCAATCATCAACTTG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * **
1667337 TCGGCTTAGAGTTGGGAGACTTTTCCATCAATCATCTACCTG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * *
1667379 TC-AGCTTAGACCCAGGAGACTTCCTTT-ATCAATCTTCTGCCCA
1 TCGA-CTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* *** ** * *
1667422 TCGGCTTAGACTTAAGAGACTTCTTTTGTCAATCGTCTGCCCG
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* ** * ** *
1667465 TCGGCTTAGACT-TAGAGACTTTTCCATCAATTGTCTACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * * * *
1667506 TCGGCTTAGAC-CTGAAAGA-GTTTTCTATTAATCATCTACCCC
1 TCGACTTAGACTC-GGGAGACTTTTTC-ATCAATCATCTGCCCA
* * * ** * *
1667548 TTGACTTAGGCCCAAGAGACTTCCTTT-GTCAATCGTCTGCCCA
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* *
1667591 TCGGCTTAG--TCGTGAGAGACTTCTTTTATCAATCATC-GACCCA
1 TCGACTTAGACTCG-G-GAGACTT-TTTCATCAATCATCTG-CCCA
* * * ** * *
1667634 TCGGCTTAGACTCGGGAGACTTCTTCATCCATTGTCTGCTCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1667676 T-TAGCTTAGTC-CTAGGAGACTTCCTTT-ATCAACCCTCTGCCTA
1 TCGA-CTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* *
1667719 TC-AGCTTAGACTCGGGAGACTTTTTCATCAATCATTTGCCCG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * **
1667761 TCGGCTTAGAC-CTGAGAGACCTTTCCATCAATCATCTGCTTA
1 TCGACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * **
1667803 TCGGCTTAGAGTTGGGAGACTTTTCCATCAATCGTCTACCTG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * ** * *
1667845 TCGGCTTGGACCCAAGAGACTTCATTT-ATTAATCA-CTTGCCTGA
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATC-TGCC-CA
* * *
1667889 T-GACTTAGAC-CTAGGAGACTTCCTTT-ATCAATCTTTTGCCCA
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * ** * **
1667931 TTGGCTTAGAC-CTGGGAGACTTTTTTTGTCAATCGTCTGCCTG
1 TCGACTTAGACTC-GGGAGAC-TTTTTCATCAATCATCTGCCCA
* * * * * * **
1667974 TCGGCTTAGAC-CTAGGAAACTTTTCCATCAATCGTCTACCTG
1 TCGACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1668016 TTGACTTAGACTTGAGAGACTTTTCCATCAATCACCTACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * * * * *
1668058 TTGGCTTAGACCCAGAAGACTATTCCTTCAATCGTCTGCCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1668100 TCGGCTTAGACCCGAGAAACTTCCTTT-TTCAATCATCTTCCCA
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * *
1668143 TCGAGTCAGACCCGGGAGACTTCTTTTATCAACCATCTGCCCG
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * ** * *
1668186 TC-AGCTTAGAC-CTAGAAGACTTTCTTTGTCAATCGTCTGCTCA
1 TCGA-CTTAGACTC-GGGAGACTTT-TTCATCAATCATCTGCCCA
* * ** * * ***
1668229 TTGGCTTAGACAT-GATAAACTTTTCCATCAATCATCTGCTTG
1 TCGACTTAGAC-TCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * *** ** *
1668271 TCGGCTCAGAC-CTGGAAGACTTCTTT-ATTTTTTGTCTACCCA
1 TCGACTTAGACTC-GGGAGACTT-TTTCATCAATCATCTGCCCA
* * * *
1668313 T-TAGCTTAGACCCGAGAGACTTTTTCCTCAATCATCTGCCCA
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * ** * **
1668355 T-TAGCTTATACTCGTGAGTCTTTTCCGTCAATTGTCTGTCTG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *
1668397 TCAACCTAAACTCGAGAGA-TTTTTCCATCAATCA-ATGCCCA
1 TCGACTTAGACTCGGGAGACTTTTT-CATCAATCATCTGCCCA
* * * ** * * * *
1668438 TCGGCATAGACCCAAGAGAATTCCCTT-GTCAATCATCTAG-TCA
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCT-GCCCA
* * * * * *
1668481 TCGACTCA-ATCTTGGGAGACTTCCTTCA-CAATCATTTACCTA
1 TCGACTTAGA-CTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * * ** * * *
1668523 TCAACTTAGTCTCGGGTGACCTTTTTTGTTAATTATGTGCCCA
1 TCGACTTAGACTCGGGAGA-CTTTTTCATCAATCATCTGCCCA
* * * * * * * ***
1668566 TCGACTCAAACCCAGCAGACTTCCTTT-ATCAATCGTGTGCTTG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * **
1668609 TCGACTTAGACTCGGAAGACTTCCTTT-GTTAATCATTTGCCTG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * ** *
1668652 TCGGCTTAGA-TCCGGTAGACTCTTCCATCTATCGCCTGCCTA
1 TCGACTTAGACT-CGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * ** * * *
1668694 TC-AGCTTATATTCGAGAGACTTTTCCATCAATTGTTTACCTA
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *
1668736 TCGGCTTAGACCCGAGAGACTTTCTTTC-TCAATCATCAGCTCA
1 TCGACTTAGACTCGGGAGAC-TT-TTTCATCAATCATCTGCCCA
* * * * * * **
1668779 TCTACTCAGACCCGAGAGACTTCCTTT-ATCAATCGTCTACCTG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
** * * * * * *
1668822 TCGGTTTACACTCGAGAGACTTCATATC-TCAATCGTCTCCCCG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * ** * * ** * * *
1668865 TTGGCTTAGACCCAAGAAACTTTTCCATCAATTGTTTACCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * ** * **
1668907 TTGACTTAAACTCGGGAGACTTTTCCATCAATTGTTTGCCTG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * *** * * ** * *
1668949 TCGGCTTAGACCCAAAAGACTTCTCCATCCGTTAT-TACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** **
1668990 TCGGCTTAGAC-CTGGGAGACTTTATTTGTCAATCATCT-CATTA
1 TCGACTTAGACTC-GGGAGACTTT-TTCATCAATCATCTGC-CCA
* * * * *
1669033 TC-AATTAGACTTGAGAGACTTTTTCATCAATCGTCTACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** * *
1669074 TCGACTTAGACTCGGGAGACCTTTCCATCAATTGTTTGCCCC
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
** * ** *
1669116 TCGACTTAGAC-CTAGAGACTTTTCCATCAATTGTGTGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * ** * *
1669157 TCAACTTAGACCCGGGAGAGTTTTCCATCAATTGTCTACCCC
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *
1669199 TCGGCTTAGAC-CTAGGAAACTTTCTTTATCAATCGTCTGCCCA
1 TCGACTTAGACTC-GGGAGACTTT-TTCATCAATCATCTGCCCA
* * * *
1669242 TCGACTTAGTCT-GAGGAGACTTCATTT-ATCAATCGTTTACCCA
1 TCGACTTAGACTCG-GGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * *
1669285 TCGGCTTTA-AC-CTGGGAGACTTCTCCATCCATTATCTACCCA
1 TCGAC-TTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1669327 TC-AGTTAGAC-CTAGGAGACTTCGTTT-GTCAATCATTTACCCG
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * ** * *
1669369 TAGACTTAGACTTGATAGACTTTTTCATCAATCATCTACCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * *
1669411 TC-AGCTTAGA-TCCAGGAGACCTTTTCATCAATCATCTGCTCG
1 TCGA-CTTAGACT-CGGGAGACTTTTTCATCAATCATCTGCCCA
* * * ***
1669453 TCGGCTTAGACAT-GGGAAACTTTTCCATCAATCATCTGCTTG
1 TCGACTTAGAC-TCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * *** ** *
1669495 TCGGCTCAGAC-CTGGAAGACTTCTTT-ATTTTTTGTCTACCCA
1 TCGACTTAGACTC-GGGAGACTT-TTTCATCAATCATCTGCCCA
* * * * *
1669537 TTGGCTTAGACCCAGGAGACTTTTTCCTCAATCATCTGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * * *** *
1669579 T-TAGCTTATAGTTGTGAGTCTTTTCCATCAATTGCCTGCCCG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *
1669621 TCAACCTAAACTCGAGAGA-TTTTTCCATCAATCA-ATGCCCA
1 TCGACTTAGACTCGGGAGACTTTTT-CATCAATCATCTGCCCA
* * ** * * * *
1669662 TCGGCTTAGACCCAAGAGAATTCCCTT-GTCAATCATCTAG-TCA
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCT-GCCCA
* * * *
1669705 TCGACTCA-ATCTTGGGAGACTTCCTTT-A-CAATCATTTGCCTA
1 TCGACTTAGA-CTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * ** * * *
1669747 TCAACTTAGTCTCGGGTGACTTTTTTTGTTAATTATGTGCCCA
1 TCGACTTAGACTCGGGAGAC-TTTTTCATCAATCATCTGCCCA
* * * * * * **
1669790 TCGACTCAAAC-CTAGCAGACTTCCTTT-ATCAATCGTGTGCCTG
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * ** * * **
1669833 TTGACTTAGGC-CTGAAAGACTTCCTTT-GTTAATCA-CTTGCCTG
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATC-TGCCCA
* * * * * * * * *
1669876 TTGGCTTAGA-TCCGGTAGACTCTTCCACCTATCGTCTGCCTA
1 TCGACTTAGACT-CGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * ** * *
1669918 TCAACTTATATTCGAGAGACTTTTCCATCAATTGTCTACCTA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *
1669960 TCGGCTTAGACCCGAGAGACTTTCTTTC-TCAATCATCAGCTCA
1 TCGACTTAGACTCGGGAGAC-TT-TTTCATCAATCATCTGCCCA
* * * * * * **
1670003 TCGGCTCAGAC-CAGAGAGACTTCCTTT-GTCAATCGTCTACCTG
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
** * * **
1670046 TCGGTTTAGACTCGAGAGACTTCATATC-TCAATTGTCTGCCCA
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * *** * * ** * * *
1670089 TTGGCTTAGACTTAAGAAACTTTTCCATCAATTGTTTACCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * ** * **
1670131 TTGACTTAAACTCGGGAGACTTTTCCATCAATTGTTTGCCTG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * * * * *
1670173 TCGGCTTAGACTCGAAAGACTTCTCCATCCATTAT-TACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * *
1670214 TCGGCTTAGAC-CTGGCAGACTTCATTT-GTCAATCATCT-CATCA
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGC-CCA
** * * * * *
1670257 TCGGGTTAGACTTGAGAGACGTTTTCATCAATCGTCTACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** * * *
1670299 TCGACTTAGACTCGGGAGACCTTTCCATCAATTGTTTACCCC
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * ** *
1670341 TTGACTTAGAC-CTGGAGACTTTTCCATCAATTGTTTGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * ** * *
1670382 TCAACTTAGACCCGGGAGAGTTTTCCATCAATTGTCTACCCC
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * *
1670424 TCGGCTTAGAC-CTAGGAGACTTTCTTTATCAATCGTCTGCCCA
1 TCGACTTAGACTC-GGGAGACTTT-TTCATCAATCATCTGCCCA
* * * * *
1670467 TCGACTTAGTC-CGAGGAGACTTTATTTATCAATCGTTTACCCA
1 TCGACTTAGACTCG-GGAGACTTT-TTCATCAATCATCTGCCCA
* * * * * *
1670510 TTGGCTTTA-AC-CTGGGAGAC-TTCTCTATCCATTATCTTCCCA
1 TCGAC-TTAGACTC-GGGAGACTTTTTC-ATCAATCATCTGCCCA
* * * * * *
1670552 TCG-GTTAGAC-CTAGGAGACTTCGTTT-GTCAATCGTTTGCCCG
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * *
1670594 TAGACTTAGACTCGAGAGACTTTTTCATCAATCGTCTACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * *
1670636 TC-AGCTTA-AATCCAGAAGAGTTTTTCATCAATCATCTGCTCG
1 TCGA-CTTAGACT-CGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * *
1670678 TCGGCTTAGAC-CTAGAGACTTTTTCATCAATCGTTTG-CCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1670718 TCAACTTAGAGC-CGGGAGAGTTTTCCATTAGTCGTCTTCCCA
1 TCGACTTAGA-CTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** *
1670760 TTGACTTAGAC-CTAGGAGACTTTCTTTGTCAATCGTCTGCCCA
1 TCGACTTAGACTC-GGGAGACTTT-TTCATCAATCATCTGCCCA
* * * * * * *
1670803 TCGGCTTAGTCTCGAGAGACTTCCTTT-GTCAATGATCTGTCCG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * ** * **
1670846 TCGGCTTAGAATCGGGAGACTTCTTT-ATCCATTGTTTGCCTG
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * * *
1670888 T-TAGCTTAGTC-CTGGGAGACTTCCTTT-ATCAACCCTCTGCCCA
1 TCGA-CTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * ***
1670931 TCAACTTAGAC-CTAGGAGACTTTTTAATCAATCGTCTGCTTG
1 TCGACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * * * ** * **
1670973 TCGGCTTAGACCCGGGAGACCTTTCCATCAATTGTCTACCTG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * * * **
1671015 CCGGTTTAGACCCGAGAGACTTTTTTATCAATTGTCTGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * *
1671057 TC-AGCTTAGAC-CTAGAAGACTTCCTTT-ATCAATCATCTGCCCG
1 TCGA-CTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * *
1671100 TTGGCTTAGACTCGGGAGA-TTTCATTTATTAATCATCTGCCCG
1 TCGACTTAGACTCGGGAGACTTT--TTCATCAATCATCTGCCCA
* * * * *
1671143 TC-AGCTTAGACTCGAGAGACTCTATT-ATCAATCGTATGCCCG
1 TCGA-CTTAGACTCGGGAGACT-TTTTCATCAATCATCTGCCCA
* * * * *
1671185 TCGGCTTAGACCCGGGAGACTTTTCCATCAATTATCTGCCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * ** ** ** *
1671227 TTGGCTTCA-ACCCTAGAGACTTTTT--T-TTTTGTCTACCCA
1 TCGACTT-AGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *
1671266 TC-AGCTTAAACCCGGAAGACTTTTTAATCAATCGTCTGCCCA
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * * ** *
1671308 T-TAGCTTAGACTCAAGAGACTTTTCCATTAATTGTCTGCCCG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
*
1671350 TCGACTTAGACTCGGGAGACTTTTCCATCAATCGA--TGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATC-ATCTGCCCA
* * * * * ** **
1671391 T-TAGCTTAGACCCGAGAGAATTTCTTTATCAATTGTCTGTTCA
1 TCGA-CTTAGACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* * * ** * * * *
1671434 TCG-GTTCAAACCCAAGAGACTTTTTATATCAATCGTTTACCCA
1 TCGACTT-AGACTCGGGAGACTTTTT-CATCAATCATCTGCCCA
* * *
1671477 TC-AGCTTAGTCTCGGGAGACTTTTTTCATCAATTATCTACCCA
1 TCGA-CTTAGACTCGGGAGAC-TTTTTCATCAATCATCTGCCCA
* * *
1671520 TCGGCTCAGAC-CTGGGAGA-TTTCCTTTATCAATCATCTGCCCA
1 TCGACTTAGACTC-GGGAGACTTT--TTCATCAATCATCTGCCCA
* * * **
1671563 TCGACTTAGACCCGGGAGACTTCCTTT-GTCAATCATTTGCCTG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * * *
1671606 TCGGCTTAGA-TCAGTAGACTCTTCCATCAATCGTCTGCCTA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1671647 T-TAGCTTAGACCCGAGAGA-TTTTTCCATTAATCGTCTACCTA
1 TCGA-CTTAGACTCGGGAGACTTTTT-CATCAATCATCTGCCCA
* * ** * * *
1671689 T-TAGCTTAGACT-AGGAGACTTTCTTTGTTAATCATCTGCTCG
1 TCGA-CTTAGACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* * * * * * * *
1671731 TCGGCTTAGACCCGAGAGACTGCCTTT-GTTAATCATCTACCTA
1 TCGACTTAGACTCGGGAGACT--TTTTCATCAATCATCTGCCCA
* * * ** * * * *
1671774 TTGGCTTAGACCCAAGAGACTTCTTTTC-TTAACCATCTACCTA
1 TCGACTTAGACTCGGGAGAC-T-TTTTCATCAATCATCTGCCCA
* * * * ** * *
1671817 TCGACTTAGACTCGAGAAACATTTCCATCAATTGTCTACCCT
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1671859 TCGACTTAGACTTGAGAGACTTTTCCATCAATCGTTTACCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *
1671901 TCTG-CTTAGAC-CTGGAAGACTTCATTT-GTCAATCATCTACTCG
1 TC-GACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * ** * *
1671944 TCGGCGTAGACTCGAGAGACTTTTTCATTAAAAATTTGCTCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * *
1671986 TGGGCTTA-AGCCCGAGAGACCTTTTCATCAATCGTCTGCCCG
1 TCGACTTAGA-CTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** * *
1672028 TCGGCTTAGA-TCTGGAGACTTTACCATCAATCGTTTGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** * ** *
1672069 TCGACTTAGGCCCAAGAGAGTTTTTCATCAATTGTCTGCCCC
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *
1672111 TCAACTTAGAC-CTAGGAGACTTCCTTT-GTCAATCGTTTG-CCA
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * *
1672153 TCGACTTAGTCTTGAGAAACTTCTTTTATCAATCGTCTGCCCA
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * * * * * ** * *
1672196 TTGGCTTAGAATCAGGAGACTTCTTCATCCATTGTCTACCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *
1672238 T-TAGCTTAGTCTCGGGAGACTTCCTTT-ATCAACCCTTTGCCCA
1 TCGA-CTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * *
1672281 TCGACTTAGAGTCGGGAGACTTTCTCATCAATCGTCTGCCCG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * ** **
1672323 TTGACTTAAAGTCGGGAGAC-CTTTCTATCAATCATCAACCTG
1 TCGACTTAGACTCGGGAGACTTTTTC-ATCAATCATCTGCCCA
* * ** * * *
1672365 TCGGCTTAGACCCAAGAGACATTTCCATCAATCGTCTGCCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * ** *
1672407 TCGAGTTAGAC-CTAGTTGACTTCCTTT-ATCAATCATCTGCCCG
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* *
1672450 TC-AGCTTAAACCCGGGAGACTTCCTTT-ATCAATCATCTGCCCA
1 TCGA-CTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
** ** *
1672493 TC-AGCTTAGACTCGAAAGACTTCTTTTGTCAATCGTCTGCCCA
1 TCGA-CTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* ** ** * * **
1672536 TCGGCTTAGACTTAGGAGACAATTCCATCAATCGTCTATCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* * * * * * * *
1672578 TCGGCTTAGACTTGGAACACTTCCTTT-GTCAATCGTCTGCTCG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * **
1672621 TCGGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCTG
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * * * **
1672663 TTGGTTTAGACACGGGAGACTTCCTTT-ATTAATCATCTACCTG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * **
1672706 TCGGCTTAGA-TCCGGGAGAC-TTTTCTATCAATCGTCTGCCTG
1 TCGACTTAGACT-CGGGAGACTTTTTC-ATCAATCATCTGCCCA
* * * ** * *
1672748 TTGGCTTAGACCCGGGAGACTTCCTTT-ATCAATTGTTTGCCCG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * ** * *
1672791 T-TAGCTTAAAC-CTGAGAGACTTTTCCATCAATTGTATGCCCG
1 TCGA-CTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * ** **
1672833 TCGGCTTAAACTCGGGAGACTTCCTTT-ATCAATTGTCTGCCTG
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * **
1672876 TC-AGCTTAGAC-CTGAGAGAGTTTTCCATCAATCATCTACCTG
1 TCGA-CTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * * * *
1672918 TC-AGCTTAAACTCGTGAGACTTCCTTT-GTCAATCGTCTACCCA
1 TCGA-CTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* *
1672961 TCGACTTAGACCCGAGAGACTTTTTTC-TCAATCATCTGCCCA
1 TCGACTTAGACTCGGGAGAC-TTTTTCATCAATCATCTGCCCA
* * * * * ***
1673003 TCGGCTTAGACCCGGGAGATTTTCTTTATCAATCGTCTGCTTG
1 TCGACTTAGACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* * * *** * *
1673046 TC-AGCTTAGGCCCAGGAGACTTTTT--TTGTTAAT-TACCCA
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** **
1673085 TC-AGCTCAGAC-CTGGGAGACTTCTTTTGTCAATTGTCTGCCCA
1 TCGA-CTTAGACTC-GGGAGACTT-TTTCATCAATCATCTGCCCA
* * * * * * **
1673128 TC-AGTTTAGACCCGAGAGACTTTTCCTTCAATTATCTAG-CTG
1 TCGA-CTTAGACTCGGGAGACTTTTTCATCAATCATCT-GCCCA
** * * * * *
1673170 TCGGTTTAAAC-CTGAGACACTTCATTT-GTCAATCATCTGCCTA
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * * * * *
1673213 TCGGCTCAGACCCGAGAGACTTTTCCATCAATCATCTACCCA
1 TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
* ** * * *
1673255 TCGACTTAAACTCGGGAGACTTTTTTTTGTTAATCGTCTGCTCA
1 TCGACTTAGACTCGGGAGAC--TTTTTCATCAATCATCTGCCCA
* *
1673299 TCGACTTAGACCCGGGAGA-TTTTTCCATCAATCGA--TGCTCA
1 TCGACTTAGACTCGGGAGACTTTTT-CATCAATC-ATCTGCCCA
* * ** * * *
1673340 TCGGCTTAGACTTGAAAGACTTCCTTT-GTCAATCGTCTGCCTA
1 TCGACTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * ** *
1673383 TCGGCTCAGAC-CTGAGAGACTTCCTTT-ATCAATTGTCTACCCA
1 TCGACTTAGACTC-GGGAGACTT--TTTCATCAATCATCTGCCCA
* * ** *
1673426 TCGACTTAGATTCGAGAGACTTCTTTTGTCAATTATCTG-CC-
1 TCGACTTAGACTCGGGAGACTT-TTTCATCAATCATCTGCCCA
* * * *
1673467 TGCCAGCTCAGACCCGGGAGACTTCCTTT-ATCAATCATCTGCCCG
1 T-CGA-CTTAGACTCGGGAGACTT--TTTCATCAATCATCTGCCCA
* * * ** * * *
1673512 TCGGCTTAGACCCGAGAGACTTTCTTTGTCAATCGTCTACCCG
1 TCGACTTAGACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* ** * * ** * **
1673555 TCGGCTTAGAC-CTGAAAGACTTTTCCATGAATTGTTTGCCTG
1 TCGACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
* * * ** * *
1673597 TTGGCTTAGACCCGGGAGACTTTCTTTGTCAATCATCTGCTCG
1 TCGACTTAGACTCGGGAGACTTT-TTCATCAATCATCTGCCCA
* * * **
1673640 TCGGCTTATAC-CTGGGAGACTTTTTCATCAATCGTCTGCTTA
1 TCGACTTAGACTC-GGGAGACTTTTTCATCAATCATCTGCCCA
1673682 TCGACT
1 TCGACT
1673688 CAATCCTGAG
Statistics
Matches: 8957, Mismatches: 2729, Indels: 1275
0.69 0.21 0.10
Matches are distributed among these distances:
38 2 0.00
39 69 0.01
40 55 0.01
41 883 0.10
42 4193 0.47
43 3422 0.38
44 274 0.03
45 32 0.00
46 24 0.00
47 3 0.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (42 bp):
TCGACTTAGACTCGGGAGACTTTTTCATCAATCATCTGCCCA
Found at i:1665190 original size:44 final size:43
Alignment explanation
Indices: 1665033--1665189 Score: 172
Period size: 43 Copynumber: 3.6 Consensus size: 43
1665023 GACTTTTCCA
* * *
1665033 TCAATCGTCTACCCGTTGGCTTAGACCCAAGAGACTTCCTTTAT
1 TCAATCGTCTACCCGTCGGCTTAGACCCAAGAGACTT-TTTTTT
* ** *
1665077 T-AATCGCCTACCCGTCGGCTTAGACCCAAGAGACTTCCTTTA
1 TCAATCGTCTACCCGTCGGCTTAGACCCAAGAGACTTTTTTTT
* * * *
1665119 TCAATCATCTGCCCGTCGACTTAGACCTAAGAGACTTTTTTTT
1 TCAATCGTCTACCCGTCGGCTTAGACCCAAGAGACTTTTTTTT
* *
1665162 GTCAATCGTCTGCCCTTCGGCTTAGACC
1 -TCAATCGTCTACCCGTCGGCTTAGACC
1665190 TGAGAAACTT
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
42 4 0.04
43 66 0.69
44 25 0.26
ACGTcount: A:0.22, C:0.31, G:0.17, T:0.31
Consensus pattern (43 bp):
TCAATCGTCTACCCGTCGGCTTAGACCCAAGAGACTTTTTTTT
Found at i:1665226 original size:86 final size:84
Alignment explanation
Indices: 1665024--1665314 Score: 217
Period size: 86 Copynumber: 3.4 Consensus size: 84
1665014 GAGTTGCAAG
* * *
1665024 ACTTTTCCATCAATCGTCTACCCGTTGGCTTAGACCCAAGAGACTTCCTTTATTAATCGCCTACC
1 ACTTTTCCATCAATCGTCTACCCGTTGACTTAGACCTAAGAGACTT-TTTTATTAATCGCCTACC
*
1665089 CGTCGGCTTAGACCCAAGAG
65 CGTCGGCTTAGACCCAAGAA
* * * * * *
1665109 ACTTCCTT-TATCAATCATCTGCCCGTCGACTTAGACCTAAGAGACTTTTTTTTGTCAATCGTCT
1 ACTT--TTCCATCAATCGTCTACCCGTTGACTTAGACCTAAGAGACTTTTTTAT-T-AATCGCCT
* * **
1665173 GCCCTTCGGCTTAGACCTGAGAA
62 ACCCGTCGGCTTAGACCCAAGAA
** * * ** * * *
1665196 ACTTTTCCATCAATCGTCTACTAGTTGACTTGGA-CTCGAGAGACTTTTCCATCAATCACCTGCC
1 ACTTTTCCATCAATCGTCTACCCGTTGACTTAGACCT-AAGAGACTTTTTTATTAATCGCCTACC
* * * *
1665260 TGTAGGCTTTGACCCAAAAA
65 CGTCGGCTTAGACCCAAGAA
* * * * * *
1665280 ACTCTTCCTTCAATCGTTTGCCCATTGATTTAGAC
1 ACTTTTCCATCAATCGTCTACCCGTTGACTTAGAC
1665315 TCAGGAAACT
Statistics
Matches: 155, Mismatches: 44, Indels: 14
0.73 0.21 0.07
Matches are distributed among these distances:
84 47 0.30
85 12 0.08
86 65 0.42
87 31 0.20
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.32
Consensus pattern (84 bp):
ACTTTTCCATCAATCGTCTACCCGTTGACTTAGACCTAAGAGACTTTTTTATTAATCGCCTACCC
GTCGGCTTAGACCCAAGAA
Found at i:1666055 original size:86 final size:85
Alignment explanation
Indices: 1665908--1666110 Score: 219
Period size: 86 Copynumber: 2.4 Consensus size: 85
1665898 ATTGACTTAG
* * *
1665908 ACCCGAGAGACTTTTCCATTAATTGTCTACCCGTCAGCTTAGACCCGAGAGACTTTCTTTCTCAA
1 ACCCGAGAGACTTTTCCATCAATTGTCTACCCATCAGCTTAGACCCGAAAGACTTTCTTTCTCAA
*
1665973 TCATCTGCTCGTCGGCTCAA
66 TCATCTGCCCGTCGGCTCAA
* * * * * *
1665993 ACCCGAGAGACTTTCTTCGTCAATTGTCTATCTATCGGCTTAGACCTGAAAGAC-TTCATTTCTC
1 ACCCGAGAGACTTT-TCCATCAATTGTCTACCCATCAGCTTAGACCCGAAAGACTTTC-TTTCTC
* * *
1666057 AATCCTCTGCCCGTCGGCTTAG
64 AATCATCTGCCCGTCGGCTCAA
** * * *
1666079 ACCTTAGAAACTTTTTCATAAATTGTCTACCC
1 ACCCGAGAGACTTTTCCATCAATTGTCTACCC
1666111 TTTGACTTAA
Statistics
Matches: 96, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
85 31 0.32
86 65 0.68
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (85 bp):
ACCCGAGAGACTTTTCCATCAATTGTCTACCCATCAGCTTAGACCCGAAAGACTTTCTTTCTCAA
TCATCTGCCCGTCGGCTCAA
Found at i:1666529 original size:338 final size:339
Alignment explanation
Indices: 1666146--1667773 Score: 1239
Period size: 338 Copynumber: 4.8 Consensus size: 339
1666136 TCATCAATCA
* * * ** *** *
1666146 TCTGCCCATCGGTTTAGA-CCAAGGAGACTTCTCTGTCCATTATCTGGTTATCAGCTTAGACCTG
1 TCTGCCCATCAGCTTAGACCCGA-GAGACTTCTCCATCCATTATCTGCCCATCAGCTTAGACCTA
* * * * *
1666210 GGAGACTTCGTTTGTCAATCGTCTCCCCATTTGCTTAGAATCGAGAGACCTTTTCATCAATCGTC
65 GGAGACTTCGTTTGTCAATCGTCTACCCGTTAGCTTAGACTCGAGAGACTTTTTCATCAATCGTC
1666275 TACCCGTCGACTTAGACCTGGGTA-ACCTTTCCATCAATTGTCTGCCCGTCGGCTTAGACCTAGA
130 TACCCGTCGACTTAGACCTGGGTAGACCTTTCCATCAATTGTCTGCCCGTCGGCTTAGACCTAGA
* *
1666339 GACTTTTCTATCAATCGTTTGCCCGTCGACTTAGACCCGGGAGAGTTTTCCATCAATCATTTGCC
195 GACTTTTCCATCAATCGTTTGCCAGTCGACTTAGACCCGGGAGAGTTTTCCATCAATCATTTGCC
* *
1666404 CTTTGGCTTAGGCCTAGGAGACTTCCTTTT-TCAATCGTCTGCCCATTAGCTTAGTCCAAGGAGA
260 CCTTGGCTTAGACCTAGGAGACTT-CTTTTGTCAATCGTCTGCCCATTAGCTTAGTCCAAGGAGA
1666468 CTTCATTTATCAATTG
324 CTTCATTTATCAATTG
* * * *
1666484 TCTGCCCATCAGCTTAGACCCGAGAGACTTCCCCATCCATTATCTGTCCGTCGGCTTAGACCTAG
1 TCTGCCCATCAGCTTAGACCCGAGAGACTTCTCCATCCATTATCTGCCCATCAGCTTAGACCTAG
* * * * * *
1666549 GAGACTTTGTTTGTCAATTGTCTACCTGTTGGCTTAGACTC-AGAGACTTTTTCATAAATCATCT
66 GAGACTTCGTTTGTCAATCGTCTACCCGTTAGCTTAGACTCGAGAGACTTTTTCATCAATCGTCT
* * * * *
1666613 ACCTGTCGACTTATACTTGGG-AGACCTTTCCATCAATTGTTTGCCCGTCGGCTTAGACCTGGAG
131 ACCCGTCGACTTAGACCTGGGTAGACCTTTCCATCAATTGTCTGCCCGTCGGCTTAGACCTAGAG
* * * *
1666677 ACTTTTCCATCAATCGTTTTCCAGTCGACTTAGACCCGGGAGAGTTTTCCATCAAACGTCTGCCC
196 ACTTTTCCATCAATCGTTTGCCAGTCGACTTAGACCCGGGAGAGTTTTCCATCAATCATTTGCCC
* * * * **
1666742 GTTGTCTTAGACCTCA-TAGACTTCTTTTGTCAATCGTTTGCCCATCGGCTTAGTCCGAA-GAGA
261 CTTGGCTTAGACCT-AGGAGACTTCTTTTGTCAATCGTCTGCCCATTAGCTTAGTCC-AAGGAGA
*
1666805 CTTCATTTATCAATCG
324 CTTCATTTATCAATTG
* * * * **
1666821 TCTTCCCGTCGGCTTAGACCTTG-GAGA-TCTCTCCATCCATTATCTGCCCATTGGCTTAGACCT
1 TCTGCCCATCAGCTTAGACC-CGAGAGACT-TCTCCATCCATTATCTGCCCATCAGCTTAGACCT
* * * * *
1666884 AGGAGACTTTGTTTGTCAATCGTCTAACCGTCAACTTAGACTTGAGAGACTTTTTCATCAATCGT
64 AGGAGACTTCGTTTGTCAATCGTCTACCCGTTAGCTTAGACTCGAGAGACTTTTTCATCAATCGT
* * * * * * * *
1666949 CTACCCATCGGCTTAGA-CT-GATGATACCTTTTCATCAATCGTCTGCTCATCGGCTTAGACCTA
129 CTACCCGTCGACTTAGACCTGGGT-AGACCTTTCCATCAATTGTCTGCCCGTCGGCTTAGACCTA
* * * *
1667012 GAGACTTTTCCATCAATCGTTTGCCTGTCGACTTAGACCCAGGAGAGTTTTTCATCAATTATCTT
193 GAGACTTTTCCATCAATCGTTTGCCAGTCGACTTAGACCCGGGAGAGTTTTCCATCAATCAT-TT
* * * *
1667077 -CCCCTCGGCTTAGACCTAGGAGACTT-TTTGTGTCAATTGTCTGCCCA-TCGACTTAGTCTC-G
257 GCCCCTTGGCTTAGACCTAGGAGACTTCTTT-TGTCAATCGTCTGCCCATTAG-CTTAGTC-CAA
* * *
1667138 GGACACTTCCTTTATTAATTG
319 GGAGACTTCATTTATCAATTG
* * ** * * * * * *
1667159 TCTGTCCGTCAGCTTAGAATCGAGAGACTTCTTCATCCATTGTCTGCCCGTTAGCTTAGTCCTGG
1 TCTGCCCATCAGCTTAGACCCGAGAGACTTCTCCATCCATTATCTGCCCATCAGCTTAGACCTAG
* * * * * * ** ** * * * *
1667224 GAGACTTCCTTTAATGATTCCTCTGCCTATCGGTTTAGACTGGAAAGACTTTTTCATCAATCATC
66 GAGACTTCGTTT-GTCAATCGTCTACCCGTTAGCTTAGACTCGAGAGACTTTTTCATCAATCGTC
* * * * ** ** ** ** *
1667289 TGCCCGTCGGCTTAGA-CTCGAG-AGACCTTTTCATCAATCATCAACTTGTCGGCTTAGAGTTGG
130 TACCCGTCGACTTAGACCT-GGGTAGACCTTTCCATCAATTGTCTGCCCGTCGGCTTAGACCT-A
* * * * * * *
1667352 GAGACTTTTCCATCAATCATCTACCTGTC-AGCTTAGACCCAGGAGACTTCCTT-TATCAATC-T
193 GAGACTTTTCCATCAATCGTTTGCCAGTCGA-CTTAGACCCGGGAGAGTT--TTCCATCAATCAT
* * * * * ** * **
1667414 TCTGCCCATCGGCTTAGACTTAAGAGACTTCTTTTGTCAATCGTCTGCCCGTCGGCTTAGACTTA
255 T-TGCCCCTTGGCTTAGACCTAGGAGACTTCTTTTGTCAATCGTCTGCCCATTAGCTTAGTCCAA
*
1667479 -GAGACTT--TTCCATCAATTG
319 GGAGACTTCATT-TATCAATTG
* * * * * * * ** * * * * * *
1667498 TCTACCCATCGGCTTAGACCTGAAAGAGTTTTCTATTAATCATCTACCCCT-TGACTTAGGCCCA
1 TCTGCCCATCAGCTTAGACCCGAGAGACTTCTCCATCCATTATCTGCCCATCAG-CTTAGACCTA
* * * * ** * * *
1667562 AGAGACTTCCTTTGTCAATCGTCTGCCCATCGGCTTAGTCGT-GAGAGACTTCTTTTATCAATCA
65 GGAGACTTCGTTTGTCAATCGTCTACCCGTTAGCTTAGAC-TCGAGAGACTT-TTTCATCAATCG
* * * * * * ** *
1667626 TCGACCCATCGGCTTAGA-CTCGGG-AGA-CTTCTTCATCCATTGTCTGCTCGTTAGCTTAGTCC
128 TCTACCCGTCGACTTAGACCT-GGGTAGACCTT-TCCATCAATTGTCTGCCCGTCGGCTTAGACC
* * * * * * *
1667688 TAGGAGACTTCCTT-TATCAACCCTCTGCCTA-TC-AGCTTAGACTCGGGAGACTTTTTCATCAA
191 TA-GAGACTT--TTCCATCAATCGTTTGCC-AGTCGA-CTTAGACCCGGGAGAGTTTTCCATCAA
* *
1667750 TCATTTGCCCGTCGGCTTAGACCT
251 TCATTTGCCCCTTGGCTTAGACCT
1667774 GAGAGACCTT
Statistics
Matches: 1039, Mismatches: 210, Indels: 81
0.78 0.16 0.06
Matches are distributed among these distances:
336 8 0.01
337 290 0.28
338 360 0.35
339 239 0.23
340 84 0.08
341 52 0.05
342 6 0.01
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.33
Consensus pattern (339 bp):
TCTGCCCATCAGCTTAGACCCGAGAGACTTCTCCATCCATTATCTGCCCATCAGCTTAGACCTAG
GAGACTTCGTTTGTCAATCGTCTACCCGTTAGCTTAGACTCGAGAGACTTTTTCATCAATCGTCT
ACCCGTCGACTTAGACCTGGGTAGACCTTTCCATCAATTGTCTGCCCGTCGGCTTAGACCTAGAG
ACTTTTCCATCAATCGTTTGCCAGTCGACTTAGACCCGGGAGAGTTTTCCATCAATCATTTGCCC
CTTGGCTTAGACCTAGGAGACTTCTTTTGTCAATCGTCTGCCCATTAGCTTAGTCCAAGGAGACT
TCATTTATCAATTG
Found at i:1667569 original size:169 final size:169
Alignment explanation
Indices: 1666200--1668137 Score: 737
Period size: 169 Copynumber: 11.5 Consensus size: 169
1666190 TGGTTATCAG
** * * * * ** *
1666200 CTTAGACCTGGGAGACTTCGTTTGTCAATCGTCTCCCCATTTGCTTAGA-ATCGAGAGAC--CTT
1 CTTAGACCCAGGAGACTTCCTTTATCAATCTTCTGCCCATCGGCTTAGACCT-GAGAGACTTCTT
* * * * * * * * *
1666262 TTCATCAATCGTCTACCCGTCGACTTAGACCT-GGGTAACCTTTCCATCAATTGTCTGCCCGTCG
65 TT-ATCAATCATCTGCCCGTCGGCTTAGACTTAGAG--ACTTTTCCATCAATCGTCTACCTGTCG
* * * *
1666326 GCTTAGACCT-AGAGACTTTTCTATCAATCGTTTGCCCGT-CGA
127 GCTTAGACCTGAGAGACTTTTCTATCAATCATCTACCC-TATGA
* * * * * *
1666368 CTTAGACCCGGGAGAGTT--TTCCATCAATCATT-TGCCCTTTGGCTTAGGCCT-AGGAGACTTC
1 CTTAGACCCAGGAGACTTCCTT-TATCAATC-TTCTGCCCATCGGCTTAGACCTGA-GAGACTT-
* * ** * ** * * * **
1666429 CTTTT-TCAATCGTCTGCCCATTAGCTTAGTCCAAGGAGACTTCATT-TATCAATTGTCTGCCCA
62 CTTTTATCAATCATCTGCCCGTCGGCTTAGACTTA-GAGACTT--TTCCATCAATCGTCTACCTG
* * ** * * * * * * *
1666492 TCAGCTTAGACCCGAGAGACTTCCCCATCCATTATCTGTCCGT-CGG
124 TCGGCTTAGACCTGAGAGACTTTTCTATCAATCATCT-ACCCTATGA
* ** * * ** * *
1666538 CTTAGACCTAGGAGACTTTGTTTGTCAAT-TGTCTACCTGTTGGCTTAGA-CTCAGAGACTT-TT
1 CTTAGACCCAGGAGACTTCCTTTATCAATCT-TCTGCCCATCGGCTTAGACCTGAGAGACTTCTT
* * * * * * * * * * * *
1666600 TCATAAATCATCTACCTGTCGACTTATACTTGGGAGACCTTTCCATCAATTGTTTGCCCGTCGGC
65 TTATCAATCATCTGCCCGTCGGCTTAGACTT-AGAGACTTTTCCATCAATCGTCTACCTGTCGGC
* * **
1666665 TTAGACCTG-GAGACTTTTCCATCAATCGT-TTTCC-AGTCGA
129 TTAGACCTGAGAGACTTTTCTATCAATCATCTACCCTA-T-GA
* * * * * * * * * *
1666705 CTTAGACCCGGGAGAGTT--TTCCATCAAACGTCTGCCCGTTGTCTTAGACCTCATAGACTTCTT
1 CTTAGACCCAGGAGACTTCCTT-TATCAATCTTCTGCCCATCGGCTTAGACCTGAGAGACTTCTT
* * * * * ** * * *
1666768 TTGTCAATCGTTTGCCCATCGGCTTAGTCCGAAGAGACTTCATT-TATCAATCGTCTTCCCGTCG
65 TTATCAATCATCTGCCCGTCGGCTTAG-ACTTAGAGACTT--TTCCATCAATCGTCTACCTGTCG
* * * * * *
1666832 GCTTAGACCTTG-GAGA-TCTCTCCATCCATTATCTGCCC-ATTGG
127 GCTTAGACC-TGAGAGACT-TTTCTATCAATCATCTACCCTA-TGA
* ** * * ** * ** *
1666875 CTTAGACCTAGGAGACTTTGTTTGTCAATCGTCTAACCGTCAACTTAGACTTGAGAGACTT-TTT
1 CTTAGACCCAGGAGACTTCCTTTATCAATCTTCTGCCCATCGGCTTAGACCTGAGAGACTTCTTT
* * * * * * * *
1666939 CATCAATCGTCTACCCATCGGCTTAGACTGATGATACCTTTT-CATCAATCGTCT-GCTCATCGG
66 TATCAATCATCTGCCCGTCGGCTTAGACTTA-GAGA-CTTTTCCATCAATCGTCTACCT-GTCGG
* * ** *
1667002 CTTAGACCT-AGAGACTTTTCCATCAATCGT-TTGCCTGTCGA
128 CTTAGACCTGAGAGACTTTTCTATCAATCATCTACCCTAT-GA
* * *
1667043 CTTAGACCCAGGAGAGTT--TTTCATCAAT-TATCTTCCCCTCGGCTTAGACCT-AGGAGACTT-
1 CTTAGACCCAGGAGACTTCCTTT-ATCAATCT-TCTGCCCATCGGCTTAGACCTGA-GAGACTTC
* ** * * * ** * * * * *
1667103 TTTGTGTCAATTGTCTGCCCATCGACTTAGTCTCGGGACACTTCCTT-TATTAATTGTCTGTCC-
63 TTT-TATCAATCATCTGCCCGTCGGCTTAGACT-TAGAGACTT--TTCCATCAATCGTCT-ACCT
* * * ** *
1667166 GTCAGCTTAGA-ATCGAGAGACTTCTTC-ATCCATTGTCTGCCCGT-T-A
123 GTCGGCTTAGACCT-GAGAGACTT-TTCTATCAATCATCTACCC-TATGA
* ** * * * * * *
1667212 GCTTAGTCCTGGGAGACTTCCTTTAATGATTCCTCTGCCTATCGGTTTAGA-CTGGAAAGACTT-
1 -CTTAGACCCAGGAGACTTCCTTT-ATCAATCTTCTGCCCATCGGCTTAGACCT-GAGAGACTTC
* * * * *
1667275 TTTCATCAATCATCTGCCCGTCGGCTTAGACTCGAGAGACCTTTT-CATCAATCATCAACTTGTC
63 TTTTATCAATCATCTGCCCGTCGGCTTAGACT-TAGAGA-CTTTTCCATCAATCGTCTACCTGTC
** * * * *
1667339 GGCTTAGAGTTGGGAGACTTTTCCATCAATCATCTA-CCTGTCA
126 GGCTTAGACCTGAGAGACTTTTCTATCAATCATCTACCCTATGA
* *
1667382 GCTTAGACCCAGGAGACTTCCTTTATCAATCTTCTGCCCATCGGCTTAGACTTAAGAGACTTCTT
1 -CTTAGACCCAGGAGACTTCCTTTATCAATCTTCTGCCCATCGGCTTAGACCTGAGAGACTTCTT
* * * **
1667447 TTGTCAATCGTCTGCCCGTCGGCTTAGACTTAGAGACTTTTCCATCAATTGTCTACCCATCGGCT
65 TTATCAATCATCTGCCCGTCGGCTTAGACTTAGAGACTTTTCCATCAATCGTCTACCTGTCGGCT
* * *
1667512 TAGACCTGAAAGAGTTTTCTATTAATCATCTACCCCT-TGA
130 TAGACCTGAGAGACTTTTCTATCAATCATCTA-CCCTATGA
* * * * * *
1667552 CTTAGGCCCAAGAGACTTCCTTTGTCAATCGTCTGCCCATCGGCTTAGTCGTGAGAGACTTCTTT
1 CTTAGACCCAGGAGACTTCCTTTATCAATCTTCTGCCCATCGGCTTAGACCTGAGAGACTTCTTT
* ** * * * **
1667617 TATCAATCATC-GACCCATCGGCTTAGACTCGGGAGACTTCTT-CATCCATTGTCT-GCTCGTTA
66 TATCAATCATCTG-CCCGTCGGCTTAGACT-TAGAGACTT-TTCCATCAATCGTCTACCT-GTCG
* * * * *
1667679 GCTTAGTCCT-AGGAGACTTCCTT-TATCAACCCTCT-GCCTATCA
127 GCTTAGACCTGA-GAGACTT--TTCTATCAATCATCTACCCTATGA
* * *
1667722 GCTTAGACTCGGGAGACTT--TTTCATCAATCATT-TGCCCGTCGGCTTAGACCTGAGAGAC--C
1 -CTTAGACCCAGGAGACTTCCTTT-ATCAATC-TTCTGCCCATCGGCTTAGACCTGAGAGACTTC
* *** * *
1667782 TTTCCATCAATCATCTGCTTATCGGCTTAGAGTTGGGAGACTTTTCCATCAATCGTCTACCTGTC
63 TTT-TATCAATCATCTGCCCGTCGGCTTAGACTT-AGAGACTTTTCCATCAATCGTCTACCTGTC
* ** * **
1667847 GGCTTGGACCCAAGAGACTTCATT-TATTAATCA-CTTGCCTGATGA
126 GGCTTAGACCTGAGAGACTT--TTCTATCAATCATCTACCCT-ATGA
* * * * *
1667892 CTTAGACCTAGGAGACTTCCTTTATCAATCTTTTGCCCATTGGCTTAGACCTGGGAGACTTTTTT
1 CTTAGACCCAGGAGACTTCCTTTATCAATCTTCTGCCCATCGGCTTAGACCTGAGAGACTTCTTT
* * * * * * *
1667957 TGTCAATCGTCTGCCTGTCGGCTTAGACCTAGGAAACTTTTCCATCAATCGTCTACCTGTTGACT
66 TATCAATCATCTGCCCGTCGGCTTAGACTTA-GAGACTTTTCCATCAATCGTCTACCTGTCGGCT
* * * *
1668022 TAGACTTGAGAGACTTTTCCATCAATCACCTACCC-ATTGG
130 TAGACCTGAGAGACTTTTCTATCAATCATCTACCCTA-TGA
* * * * *
1668062 CTTAGACCCAGAAGACTATTCC--T-TCAATCGTCTGCCCGTCGGCTTAGACCCGAGAAACTTCC
1 CTTAGACCCAGGAGAC--TTCCTTTATCAATCTTCTGCCCATCGGCTTAGACCTGAGAGACTT-C
1668124 TTTT-TCAATCATCT
63 TTTTATCAATCATCT
1668138 TCCCATCGAG
Statistics
Matches: 1337, Mismatches: 328, Indels: 209
0.71 0.18 0.11
Matches are distributed among these distances:
165 4 0.00
166 27 0.02
167 103 0.08
168 171 0.13
169 427 0.32
170 362 0.27
171 195 0.15
172 47 0.04
173 1 0.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.33
Consensus pattern (169 bp):
CTTAGACCCAGGAGACTTCCTTTATCAATCTTCTGCCCATCGGCTTAGACCTGAGAGACTTCTTT
TATCAATCATCTGCCCGTCGGCTTAGACTTAGAGACTTTTCCATCAATCGTCTACCTGTCGGCTT
AGACCTGAGAGACTTTTCTATCAATCATCTACCCTATGA
Found at i:1667861 original size:297 final size:296
Alignment explanation
Indices: 1667280--1667867 Score: 657
Period size: 297 Copynumber: 2.0 Consensus size: 296
1667270 GACTTTTTCA
* ***
1667280 TCAATCATCTGCCCGTCGGCTTAGACTCGAGAGACCTTTTCATCAATCATCAACTTGTCGGCTTA
1 TCAATCATCTGCCCATCGGCTTAGACTCGAGAGACCTTTTCATCAATCATCAACCCATCGGCTTA
* *
1667345 GAGTTGGGAGACTTTTCCATCAATCATCTACCTGTCAGCTTAGACCCAGGAGACTTCCTTTATCA
66 GACTCGGGAGACTTTTCCATCAATCATCTACCTGTCAGCTTAGACCCAGGAGACTTCCTTTATCA
* * * * ** *
1667410 ATCTTCTGCCCATCGGCTTAGACTTAAGAGACTTCTTTTGTCAATCGTCTGCCCGTCGGCTTAGA
131 ACCCTCTGCCCATCAGCTTAGACTCAAGAGACTTCTTTCATCAATCATCTGCCCGTCGGCTTAGA
* * ** * * *
1667475 CTTAGAGACTTTTCCATCAATTGTCTACCCATCGGCTTAGACCTGAAAGAGTTTTCTATTAATCA
196 CTGAGAGACCTTTCCATCAATCATCTACCCATCGGCTTAGACCTGAAAGACTTTTCCATCAATCA
*
1667540 TCTACCCCTTGACTTAGGCCCAAGAGACTTCCTTTG
261 TCTACCCCTCGACTTAGGCCCAAGAGACTTCCTTTG
* * *
1667576 TCAATCGTCTGCCCATCGGCTTAGTCGT-GAGAGACTTCTTTT-ATCAATCATCGACCCATCGGC
1 TCAATCATCTGCCCATCGGCTTAGAC-TCGAGAGAC--CTTTTCATCAATCATCAACCCATCGGC
* ** * * * *
1667639 TTAGACTCGGGAGACTTCTT-CATCCATTGTCT-GCTCGTTAGCTTAGTCCTAGGAGACTTCCTT
63 TTAGACTCGGGAGACTT-TTCCATCAATCATCTACCT-GTCAGCTTAGACCCAGGAGACTTCCTT
* ** *
1667702 TATCAACCCTCTGCCTATCAGCTTAGACTCGGGAGACTT-TTTCATCAATCATTTGCCCGTCGGC
126 TATCAACCCTCTGCCCATCAGCTTAGACTCAAGAGACTTCTTTCATCAATCATCTGCCCGTCGGC
* ** ** **
1667766 TTAGACCTGAGAGACCTTTCCATCAATCATCTGCTTATCGGCTTAGAGTTGGGAGACTTTTCCAT
191 TTAGA-CTGAGAGACCTTTCCATCAATCATCTACCCATCGGCTTAGACCTGAAAGACTTTTCCAT
* ** *
1667831 CAATCGTCTACCTGTCGGCTT-GGACCCAAGAGACTTC
255 CAATCATCTACCCCTCGACTTAGG-CCCAAGAGACTTC
1667868 ATTTATTAAT
Statistics
Matches: 239, Mismatches: 46, Indels: 13
0.80 0.15 0.04
Matches are distributed among these distances:
296 60 0.25
297 172 0.72
298 7 0.03
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (296 bp):
TCAATCATCTGCCCATCGGCTTAGACTCGAGAGACCTTTTCATCAATCATCAACCCATCGGCTTA
GACTCGGGAGACTTTTCCATCAATCATCTACCTGTCAGCTTAGACCCAGGAGACTTCCTTTATCA
ACCCTCTGCCCATCAGCTTAGACTCAAGAGACTTCTTTCATCAATCATCTGCCCGTCGGCTTAGA
CTGAGAGACCTTTCCATCAATCATCTACCCATCGGCTTAGACCTGAAAGACTTTTCCATCAATCA
TCTACCCCTCGACTTAGGCCCAAGAGACTTCCTTTG
Found at i:1667909 original size:297 final size:297
Alignment explanation
Indices: 1667381--1667952 Score: 636
Period size: 297 Copynumber: 1.9 Consensus size: 297
1667371 TCTACCTGTC
* * * *
1667381 AGCTTAGACCCAGGAGACTTCCTTTATCAATCTTCTGCCCATCGGCTTAGACTTAAGAGACTTCT
1 AGCTTAGACCCAGGAGACTTCCTTTATCAACCCTCTGCCCATCAGCTTAGACTCAAGAGACTTCT
** * * * **
1667446 TTTGTCAATCGTCTGCCCGTCGGCTTAGACTTAGAGACTTTTCCATCAATTGTCTACCCATCGGC
66 TTCATCAATCATCTGCCCGTCGGCTTAGACTGAGAGACCTTTCCATCAATCATCTACCCATCGGC
* * * * * *
1667511 TTAGACCTGAAAGAGTTTTCTATTAATCATCTACCCCTTGACTTAGGCCCAAGAGACTTCCTTTG
131 TTAGACCTGAAAGACTTTTCCATCAATCATCTACCCCTCGACTTAGGCCCAAGAGACTTCATTTA
* * * * *
1667576 TCAATCGTCTGCCCATCGGCTTAGTCGTGAGAGACTTCTTTTATCAATC-ATCGACCCATCGGCT
196 TCAATCCTCTGCCCATCGACTTAGACCTGAGAGACTTCCTTTATCAATCTATCG-CCCATCGGCT
1667640 TAGA-CTCGGGAGACTTCTTCATCCATTGTCTGCTCGTT
260 TAGACCT-GGGAGACTTCTTCATCCATTGTCTGCTCGTT
* * * **
1667678 AGCTTAGTCCTAGGAGACTTCCTTTATCAACCCTCTGCCTATCAGCTTAGACTCGGGAGACTT-T
1 AGCTTAGACCCAGGAGACTTCCTTTATCAACCCTCTGCCCATCAGCTTAGACTCAAGAGACTTCT
* * **
1667742 TTCATCAATCATTTGCCCGTCGGCTTAGACCTGAGAGACCTTTCCATCAATCATCTGCTTATCGG
66 TTCATCAATCATCTGCCCGTCGGCTTAGA-CTGAGAGACCTTTCCATCAATCATCTACCCATCGG
** ** * ** *
1667807 CTTAGAGTTGGGAGACTTTTCCATCAATCGTCTACCTGTCGGCTT-GGACCCAAGAGACTTCATT
130 CTTAGACCTGAAAGACTTTTCCATCAATCATCTACCCCTCGACTTAGG-CCCAAGAGACTTCATT
* * * * *
1667871 TATTAATCACT-TGCCTGAT-GACTTAGACCT-AGGAGACTTCCTTTATCAATCTTTTGCCCATT
194 TATCAATC-CTCTGCC-CATCGACTTAGACCTGA-GAGACTTCCTTTATCAATCTATCGCCCATC
1667933 GGCTTAGACCTGGGAGACTT
256 GGCTTAGACCTGGGAGACTT
1667953 TTTTTGTCAA
Statistics
Matches: 224, Mismatches: 44, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
296 29 0.13
297 188 0.84
298 7 0.03
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (297 bp):
AGCTTAGACCCAGGAGACTTCCTTTATCAACCCTCTGCCCATCAGCTTAGACTCAAGAGACTTCT
TTCATCAATCATCTGCCCGTCGGCTTAGACTGAGAGACCTTTCCATCAATCATCTACCCATCGGC
TTAGACCTGAAAGACTTTTCCATCAATCATCTACCCCTCGACTTAGGCCCAAGAGACTTCATTTA
TCAATCCTCTGCCCATCGACTTAGACCTGAGAGACTTCCTTTATCAATCTATCGCCCATCGGCTT
AGACCTGGGAGACTTCTTCATCCATTGTCTGCTCGTT
Found at i:1669164 original size:83 final size:83
Alignment explanation
Indices: 1669037--1669250 Score: 275
Period size: 83 Copynumber: 2.5 Consensus size: 83
1669027 TCATTATCAA
* * *
1669037 TTAGACTTGAGAGACTTTTTCATCAATCGTCTACCCATCGACTTAGACTCGGGAGACCTTTCCAT
1 TTAGACCT-AGAGACTTTTTCATCAATCGTCTGCCCATCGACTTAGACCCGGGAGACCTTTCCAT
* *
1669102 CAATTGTTTGCCCCTCGAC
65 CAATTGTCTACCCCTCGAC
* * * * **
1669121 TTAGACCTAGAGACTTTTCCATCAATTGTGTGCCCATCAACTTAGACCCGGGAGAGTTTTCCATC
1 TTAGACCTAGAGACTTTTTCATCAATCGTCTGCCCATCGACTTAGACCCGGGAGACCTTTCCATC
*
1669186 AATTGTCTACCCCTCGGC
66 AATTGTCTACCCCTCGAC
* *
1669204 TTAGACCTAGGAAACTTTCTTTATCAATCGTCTGCCCATCGACTTAG
1 TTAGACCTA-GAGACTTT-TTCATCAATCGTCTGCCCATCGACTTAG
1669251 TCTGAGGAGA
Statistics
Matches: 110, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
83 73 0.66
84 14 0.13
85 23 0.21
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (83 bp):
TTAGACCTAGAGACTTTTTCATCAATCGTCTGCCCATCGACTTAGACCCGGGAGACCTTTCCATC
AATTGTCTACCCCTCGAC
Found at i:1670382 original size:83 final size:82
Alignment explanation
Indices: 1670262--1670811 Score: 270
Period size: 83 Copynumber: 6.5 Consensus size: 82
1670252 CATCATCGGG
* * *
1670262 TTAGACTTGAGAGACGTTTTCATCAATCGTCTACCCATCGACTTAGACTCGGGAGACCTTTCCAT
1 TTAGACCTG-GAGAC-TTTTCATCAATCGTCTGCCCATCGACTTAGACCCGGGAGACCTTTCCAT
* *
1670327 CAATTGTTTACCCCTTGAC
64 CAATTGTCTACCCCTCGAC
* * * **
1670346 TTAGACCTGGAGACTTTTCCATCAATTGTTTGCCCATCAACTTAGACCCGGGAGAGTTTTCCATC
1 TTAGACCTGGAGACTTTT-CATCAATCGTCTGCCCATCGACTTAGACCCGGGAGACCTTTCCATC
*
1670411 AATTGTCTACCCCTCGGC
65 AATTGTCTACCCCTCGAC
* * * *
1670429 TTAGACCTAGGAGACTTTCTTTATCAATCGTCTGCCCATCGACTTAG-TCCGAGGAGACTTTATT
1 TTAGACCT-GGAGAC-TT-TTCATCAATCGTCTGCCCATCGACTTAGACCCG-GGAGACCTT-TC
* * * * * *
1670493 TATCAATCGTTTACCCATTGGC
61 CATCAATTGTCTACCCCTCGAC
* * ** * * **
1670515 TTTA-ACCTGGGAGACTTCTCTATCCATTATCTTCCCATCG-GTTAGACCTAGGAGACTTCGTTT
1 -TTAGACCT-GGAGACTTTTC-ATCAATCGTCTGCCCATCGACTTAGACCCGGGAGAC--C-TTT
* * * * * *
1670578 --GTCAATCGTTTGCCCGTAGAC
60 CCATCAATTGTCTACCCCTCGAC
* * * * * ** *
1670599 TTAGA-CTCGAGAGACTTTTTCATCAATCGTCTACCCATC-AGCTTAAATCCAGAAGAGTTTTTC
1 TTAGACCT-G-GAGAC-TTTTCATCAATCGTCTGCCCATCGA-CTTAGACCCGGGAGACCTTTCC
** * * * *
1670662 ATCAATCATCTGCTCGTCGGC
62 ATCAATTGTCTACCCCTCGAC
* * * * ** *
1670683 TTAGACCTAGAGACTTTTTCATCAATCGTTTG-CCATCAACTTAGAGCCGGGAGAGTTTTCCATT
1 TTAGACCTGGAGAC-TTTTCATCAATCGTCTGCCCATCGACTTAGACCCGGGAGACCTTTCCATC
* * * * *
1670747 AGTCGTCTTCCCATTGAC
65 AATTGTCTACCCCTCGAC
** *
1670765 TTAGACCTAGGAGACTTTCTTTGTCAATCGTCTGCCCATCGGCTTAG
1 TTAGACCT-GGAGAC-TT-TTCATCAATCGTCTGCCCATCGACTTAG
1670812 TCTCGAGAGA
Statistics
Matches: 361, Mismatches: 81, Indels: 47
0.74 0.17 0.10
Matches are distributed among these distances:
82 50 0.14
83 103 0.29
84 96 0.27
85 76 0.21
86 31 0.09
87 5 0.01
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.33
Consensus pattern (82 bp):
TTAGACCTGGAGACTTTTCATCAATCGTCTGCCCATCGACTTAGACCCGGGAGACCTTTCCATCA
ATTGTCTACCCCTCGAC
Found at i:1670581 original size:337 final size:336
Alignment explanation
Indices: 1670189--1672653 Score: 838
Period size: 337 Copynumber: 7.3 Consensus size: 336
1670179 TAGACTCGAA
1670189 AGACTTCTCCATCCATTATTACCCATCGGCTTAGACCTGGCAGACTTCATTTGTCAATCATCT-C
1 AGACTTCTCCATCCATTATTACCCATCGGCTTAGACCTGGCAGACTTCATTTGTCAATCATCTGC
* * ** * * * *
1670253 ATCATCGGGTTAGACTTGAGAGACGTTTTCATCAATCGTCTACCCATC-GACTTAGA-CTCGGGA
66 -CCATAGACTTAGACTCGAGAGACGTTTTCATCAATCGTCTACCCATCAG-CTTAAATC-CAGAA
** * * * *
1670316 GACCTTTCCATCAATTGTTTACCCCTTGACTTAGACCTGGAGACTTTTCCATCAATTGTTTGCCC
128 GACCTTTCCATCAATCATCTACCCCTCGACTTAGACCTAGAGACTTTTCCATCAATCGTTTG-CC
* * *
1670381 ATCAACTTAGACCCGGGAGAGTTTTCCATCAATTGTCTACCCCTCGGCTTAGACCTAGGAGACTT
192 ATCAACTTAGACCCGGGAGAGTTTTCCATCAATCGTCTACCCATCGACTTAGACCTAGGAGACTT
1670446 TCTTTATCAATCGTCTGCCCATCGACTTAGTC-CGAGGAGACTTTATTTATCAATCGTTTACCCA
257 TCTTTATCAATCGTCTGCCCATCGACTTAGTCTCGA-GAGACTTTATTTATCAATCGTTTACCCA
1670510 TTGGCTTTAACCTGGG
321 TTGGCTTTAACCTGGG
* * * * *
1670526 AGACTTCTCTATCCATTATCTTCCCATCGG-TTAGACCTAGG-AGACTTCGTTTGTCAATCGTTT
1 AGACTTCTCCATCCATTAT-TACCCATCGGCTTAGACCT-GGCAGACTTCATTTGTCAATCATCT
* *
1670589 GCCCGTAGACTTAGACTCGAGAGACTTTTTCATCAATCGTCTACCCATCAGCTTAAATCCAGAAG
64 GCCCATAGACTTAGACTCGAGAGACGTTTTCATCAATCGTCTACCCATCAGCTTAAATCCAGAAG
** * * * * * *
1670654 AGTTTTTCATCAATCATCTGCTCGTCGGCTTAGACCTAGAGACTTTTTCATCAATCGTTTGCCAT
129 ACCTTTCCATCAATCATCTACCCCTCGACTTAGACCTAGAGACTTTTCCATCAATCGTTTGCCAT
* * * * *
1670719 CAACTTAGAGCCGGGAGAGTTTTCCATTAGTCGTCTTCCCATTGACTTAGACCTAGGAGACTTTC
194 CAACTTAGACCCGGGAGAGTTTTCCATCAATCGTCTACCCATCGACTTAGACCTAGGAGACTTTC
* * ** * * ** * *
1670784 TTTGTCAATCGTCTGCCCATCGGCTTAGTCTCGAGAGACTTCCTTTGTCAAT-GATCTGTCCGTC
259 TTTATCAATCGTCTGCCCATCGACTTAGTCTCGAGAGACTTTATTTATCAATCG-TTTACCCATT
* *
1670848 GGCTTAGAATC-GGG
323 GGCTT-TAACCTGGG
** * * ** ** * * * * * *
1670862 AGACTTCTTTATCCATTGTTTGCCTGTTAGCTTAGTCCTGGGAGACTTCCTTTATCAACCCTCTG
1 AGACTTCTCCATCCATT-ATTACCCATCGGCTTAGACCTGGCAGACTTCATTTGTCAATCATCTG
* * * * *** * * * * *
1670927 CCCATCA-ACTTAGAC-CTAGGAGACTTTTTAATCAATCGTCTGCTTGTCGGCTTAGACCCGGGA
65 CCCAT-AGACTTAGACTCGA-GAGACGTTTTCATCAATCGTCTACCCATCAGCTTAAATCCAGAA
** * ** * ** * *
1670990 GACCTTTCCATCAATTGTCTACCTGC-CGGTTTAGACCCGAGAGACTTTTTTATCAATTGTCTGC
128 GACCTTTCCATCAATCATCTACC-CCTCGACTTAGA-CCTAGAGACTTTTCCATCAATCGTTTG-
* ** * * * * * * * * *
1671054 CCATCAGCTTAGACCTAGAAGACTTCCTT-TATCAATCATCTGCCCGTTGGCTTAGA-CTCGGGA
190 CCATCAACTTAGACCCGGGAGAGTT--TTCCATCAATCGTCTACCCATCGACTTAGACCT-AGGA
* * * * * *
1671117 GA-TTTCATTTATTAATCATCTGCCCGTC-AGCTTAGACTCGAGAGACTCTA-TTATCAATCGTA
252 GACTTTC-TTTATCAATCGTCTGCCCATCGA-CTTAGTCTCGAGAGACTTTATTTATCAATCGTT
* * * *
1671179 TGCCCGTCGGC-TTAGACCCGGG
315 TACCCATTGGCTTTA-ACCTGGG
* * * * * * ** **
1671201 AGACTTTTCCATCAATTATCTGCCCGTTGGCTTCA-ACCCTAG-AGACTT--TTT-T-TTTTGTC
1 AGACTTCTCCATCCATTAT-TACCCATCGGCTT-AGA-CCTGGCAGACTTCATTTGTCAATCATC
* * * * * * * * *
1671260 TACCCATCAG-CTTAAACCCG-GAAGACTTTTTAATCAATCGTCTGCCCATTAGCTTAGACTCAA
63 TGCCCAT-AGACTTAGACTCGAG-AGACGTTTTCATCAATCGTCTACCCATCAGCTTA-AATCCA
* * ** * * ** *
1671323 G-AGACTTTTCCATTAATTGTCTGCCCGTCGACTTAGACTCGGGAGACTTTTCCATCAATCG-AT
125 GAAGACCTTTCCATCAATCATCTACCCCTCGACTTAGAC-CTAGAGACTTTTCCATCAATCGTTT
* * * * ** * *** * * * *
1671386 GCCCATTAGCTTAGACCCGAGAGAATTTCTTTATCAATTGTCTGTTCATCG-GTTCAAACCCAAG
189 G-CCATCAACTTAGACCCGGGAGAGTTT-TCCATCAATCGTCTACCCATCGACTT-AGACCTAGG
* * * **
1671450 AGACTTT-TTATATCAATCGTTTACCCATC-AGCTTAGTCTCGGGAGACTTT-TTTCATCAATTA
251 AGACTTTCTT-TATCAATCGTCTGCCCATCGA-CTTAGTCTCGAGAGACTTTATTT-ATCAATCG
* * *
1671512 TCTACCCATCGGC-TCAGACCTGGG
313 TTTACCCATTGGCTTTA-ACCTGGG
* ** * * * * * * * *
1671536 AGATTTCCTTTATCAATCATCTGCCCATCGACTTAGACCCGGGAGACTTCCTTTGTCAATCATTT
1 AGACTT-CTCCATCCATTAT-TACCCATCGGCTTAGACCTGGCAGACTTCATTTGTCAATCATCT
** * * * * * * * *
1671601 GCCTGTCGGCTTAGA-TC-AGTAGAC-TCTTCCATCAATCGTCTGCCTATTAGCTTAGA-CCCGA
64 GCCCATAGACTTAGACTCGAG-AGACGT-TTTCATCAATCGTCTACCCATCAGCTTAAATCCAGA
** * * ** * *** * * *
1671662 GAGATTTTTCCATTAATCGTCTACCTAT-TAGCTTAGA-CTAGGAGACTTTCTTTGTTAATCATC
127 -AGACCTTTCCATCAATCATCTACCCCTCGA-CTTAGACCTA-GAGACTTT-TCCATCAATCGTT
* ** * * * * * * * * *
1671725 TGCTCGTCGGCTTAGACCCGAGAGACTGCCTTT--GTTAATCATCTACCTATTGGCTTAGACCCA
188 TGC-CATCAACTTAGACCCGGGAGA--G-TTTTCCATCAATCGTCTACCCATCGACTTAGACCTA
* * * * * * * * ** *
1671788 AGAGAC-TTCTTT-TCTTAACCATCTACCTATCGACTTAGACTCGAGAAACATT-TCCATCAATT
249 GGAGACTTTCTTTATC--AATCGTCTGCCCATCGACTTAGTCTCGAGAGACTTTATTTATCAATC
* * * *
1671850 GTCTACCC-TTCGAC-TTAGACTTGAG
312 GTTTACCCATT-GGCTTTA-ACCTGGG
* * * * *
1671875 AGACTTTTCCATCAATCGT-TTACCCGTCTGCTTAGACCTGGAAGACTTCATTTGTCAATCATCT
1 AGACTTCTCCATCCAT--TATTACCCATCGGCTTAGACCTGGCAGACTTCATTTGTCAATCATCT
* * * * * * * * *** * * * ** * *
1671939 ACTCGTCGGCGTAGACTCGAGAGACTTTTTCATTAAAAATTTGCTCATGGGCTT-AAGCCCGAGA
64 GCCCATAGACTTAGACTCGAGAGACGTTTTCATCAATCGTCTACCCATCAGCTTAAATCCAGA-A
* * * * * * * *
1672003 GACCTTTTCATCAATCGTCTGCCCGTCGGCTTAGATCTGGAGACTTTACCATCAATCGTTTGCCC
128 GACCTTTCCATCAATCATCTACCCCTCGACTTAGACCTAGAGACTTTTCCATCAATCGTTTG-CC
* * ** * * * * *
1672068 ATCGACTTAGGCCCAAGAGAGTTTTTCATCAATTGTCTGCCCCTCAACTTAGACCTAGGAGACTT
192 ATCAACTTAGACCCGGGAGAGTTTTCCATCAATCGTCTACCCATCGACTTAGACCTAGGAGACTT
* * * * * * *
1672133 CCTTTGTCAATCGTTTG-CCATCGACTTAGTCTTGAGAAACTTCT-TTTATCAATCGTCTGCCCA
257 TCTTTATCAATCGTCTGCCCATCGACTTAGTCTCGAGAGACTT-TATTTATCAATCGTTTACCCA
* * *
1672196 TTGGCTTAGAATC-AGG
321 TTGGCTT-TAACCTGGG
* * * ** * * * * * * *
1672212 AGACTTCTTCATCCATTGTCTACCCGTTAGCTTAG-TCTCGGGAGACTTCCTTTATCAACCCTTT
1 AGACTTCTCCATCCATTAT-TACCCATCGGCTTAGACCT-GGCAGACTTCATTTGTCAATCATCT
* * * * * * *
1672276 GCCCATCGACTTAGAGTCGGGAGAC-TTTCTCATCAATCGTCTGCCCGT-TGACTTAAAGT-CGG
64 GCCCATAGACTTAGACTCGAGAGACGTTT-TCATCAATCGTCTACCCATCAG-CTTAAA-TCCAG
* * * ** * * * *
1672338 GAGACCTTTCTATCAATCATCAACCTGTCGGCTTAGACCCAAGAGACATTTCCATCAATCGTCTG
126 AAGACCTTTCCATCAATCATCTACCCCTCGACTTAGA-CCTAGAGACTTTTCCATCAATCGTTTG
* * ** ** * * * * * * **
1672403 CCCATCGAGTTAGACCTAGTTGACTTCCTT-TATCAATCATCTGCCCGTC-AGCTTAAACCCGGG
190 -CCATCAACTTAGACCCGGGAGAGTT--TTCCATCAATCGTCTACCCATCGA-CTTAGACCTAGG
* * * * *
1672466 AGACTTCCTTTATCAATCATCTGCCCATC-AGCTTAGACTCGAAAGACTTCT-TTTGTCAATCGT
251 AGACTTTCTTTATCAATCGTCTGCCCATCGA-CTTAGTCTCGAGAGACTT-TATTTATCAATCGT
* * * * *
1672529 CTGCCCATCGGC-TTAGACTTAGG
314 TTACCCATTGGCTTTA-ACCTGGG
* * ** * * * * * *
1672552 AGACAAT-TCCATCAATCGTCTATCCATCGGCTTAGACTTGGAACACTTCCTTTGTCAATCGTCT
1 AGAC-TTCTCCATCCATTAT-TACCCATCGGCTTAGACCTGGCAGACTTCATTTGTCAATCATCT
* * * * * *
1672616 GCTCGTCGGCTTAGACCCGAGAGACTTTTTCATCAATC
64 GCCCATAGACTTAGACTCGAGAGACGTTTTCATCAATC
1672654 ATCTGCCTGT
Statistics
Matches: 1593, Mismatches: 433, Indels: 201
0.72 0.19 0.09
Matches are distributed among these distances:
332 1 0.00
333 5 0.00
334 78 0.05
335 134 0.08
336 202 0.13
337 405 0.25
338 193 0.12
339 291 0.18
340 271 0.17
341 10 0.01
342 1 0.00
343 2 0.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (336 bp):
AGACTTCTCCATCCATTATTACCCATCGGCTTAGACCTGGCAGACTTCATTTGTCAATCATCTGC
CCATAGACTTAGACTCGAGAGACGTTTTCATCAATCGTCTACCCATCAGCTTAAATCCAGAAGAC
CTTTCCATCAATCATCTACCCCTCGACTTAGACCTAGAGACTTTTCCATCAATCGTTTGCCATCA
ACTTAGACCCGGGAGAGTTTTCCATCAATCGTCTACCCATCGACTTAGACCTAGGAGACTTTCTT
TATCAATCGTCTGCCCATCGACTTAGTCTCGAGAGACTTTATTTATCAATCGTTTACCCATTGGC
TTTAACCTGGG
Found at i:1670768 original size:82 final size:82
Alignment explanation
Indices: 1670596--1670800 Score: 194
Period size: 82 Copynumber: 2.5 Consensus size: 82
1670586 TTTGCCCGTA
* ** * * *
1670596 GACTTAGACTCGAGAGACTTTTTCATCAATCGTCTACCCATCAGCTTAAATCCAGAAGAGTTTTT
1 GACTTAGAC-CTAGAGACTTTTTCATCAATCGT-TTGCCATCAACTTAAAGCCAGAAGAGTTTTC
* *
1670661 CATCAATCATCTGCTCGTC
64 CATCAATCATCTGCCCATC
* * * *
1670680 GGCTTAGACCTAGAGACTTTTTCATCAATCGTTTGCCATCAACTTAGAGCCGGGAGAGTTTTCCA
1 GACTTAGACCTAGAGACTTTTTCATCAATCGTTTGCCATCAACTTAAAGCCAGAAGAGTTTTCCA
* * * * *
1670745 TTAGTCGTCTTCCCATT
66 TCAATCATCTGCCCATC
** *
1670762 GACTTAGACCTAGGAGACTTTCTTTGTCAATCGTCTGCC
1 GACTTAGACCTA-GAGACTTT-TTCATCAATCGTTTGCC
1670801 CATCGGCTTA
Statistics
Matches: 98, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
82 46 0.47
83 30 0.31
84 22 0.22
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (82 bp):
GACTTAGACCTAGAGACTTTTTCATCAATCGTTTGCCATCAACTTAAAGCCAGAAGAGTTTTCCA
TCAATCATCTGCCCATC
Found at i:1671190 original size:212 final size:210
Alignment explanation
Indices: 1669933--1673535 Score: 968
Period size: 212 Copynumber: 17.0 Consensus size: 210
1669923 TTATATTCGA
* *
1669933 GAGACTTTTCCATCAATTGTCTACCTATCGGCTTAGACCCGAGAGACTTTCTTTC-TCAATCATC
1 GAGAC-TTTCCATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGAC-TT-TTTCATCAATCGTC
* * * * * * * *
1669997 -AGCTCATCGGCTCAGACC-AGAGAGACTTCCTTTGTCAATCGTCTACCTGTCGGTTTAGACTCG
63 TA-CCCATCAGCTTAGACCTAGA-AGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTCG
* * ** * *** * * *
1670060 AGAGACTTC-ATATCTCAATTGTCTGCCCATTGGCTTAGACTTAAGAAACT-TTTCCATCAATTG
126 AGAGATTTCTTTAT-T-AATCATCTGCCCA-TCGCTTAGACCCGAGAGACTCTTTTCATCAATCG
* * * * * *
1670123 TTTACCCGTTGACTTAAACTCGG
188 TCTGCCCGTCGGCTTAGACCCGG
* * * * * * * **
1670146 GAGACTTTTCCATCAATTGTTTGCCTGTCGGCTTAGACTCGAAAGACTTCTCCATCCATTAT-TA
1 GAGAC-TTTCCATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTTTTTCATCAATCGTCTA
* * * * * * * * *
1670210 CCCATCGGCTTAGACCTGGCAGACTTCATTTGTCAATCATCT-CATCATCGGGTTAGACTTGAGA
65 CCCATCAGCTTAGACCTAGAAGACTTCCTTTATCAATCATCTGC-CCGTCGGCTTAGACTCGAGA
* * * * * * * * * * *
1670274 GACGTT-TTCATCAATCGTCTACCCATCGACTTAGACTCGGGAGAC-CTTTCCATCAATTGTTTA
129 GA-TTTCTTTATTAATCATCTGCCCATCG-CTTAGACCCGAGAGACTCTTTTCATCAATCGTCTG
* * * *
1670337 CCCCTTGACTTAGA-CCTG
192 CCCGTCGGCTTAGACCCGG
* * ** * * * *
1670355 GAGACTTTTCCATCAATTGTTTGCCCATCAACTTAGACCCGGGAGAGTTTTCCATCAATTGTCTA
1 GAGAC-TTTCCATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTTTTTCATCAATCGTCTA
* * * * * * * *
1670420 CCCCTCGGCTTAGACCTAGGAGACTTTCTTTATCAATCGTCTGCCCATCGACTTAGTC-CGAGGA
65 CCCATCAGCTTAGACCTAGAAGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTCGA-GA
* * * * * * * * * * **
1670484 GACTTTATTTATCAATCGTTTACCCATTGGCTTTA-ACCTGGGAGA--CTTCTCTATCCATTATC
129 GA-TTTCTTTATTAATCATCTGCCCA-TCGC-TTAGACCCGAGAGACTCTTTTC-ATCAATCGTC
* * **
1670546 TTCCCATCGG-TTAGACCTAG
190 TGCCCGTCGGCTTAGACCCGG
*** * * ** * * *
1670566 GAGACTTCGTTTGTCAATCGTTTGCCCGTAGACTTAGACTCGAGAGACTTTTTCATCAATCGTCT
1 GAGACTT--TCCATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTTTTTCATCAATCGTCT
* * * *
1670631 ACCCATCAGCTTAAATCC-AGAAGAGTT--TTTCATCAATCATCTGCTCGTCGGCTTAGAC-CTA
64 ACCCATCAGCTTAGA-CCTAGAAGACTTCCTTT-ATCAATCATCTGCCCGTCGGCTTAGACTCGA
* * * * * * * * * * *
1670692 GAGACTTT-TTCATCAATCGTTTG-CCATCAACTTAGAGCCGGGAGAGT-TTTCCATTAGTCGTC
127 GAGA-TTTCTTTATTAATCATCTGCCCATC-GCTTAGACCCGAGAGACTCTTTTCATCAATCGTC
* * * * **
1670754 TTCCCATTGACTTAGACCTAG
190 TGCCCGTCGGCTTAGACCCGG
** * * * * *
1670775 GAGACTTTCTTTGTCAATCGTCTGCCCATCGGCTTAGTCTCGAGAGACTTCCTTT-GTCAAT-GA
1 GAGACTTTC--CATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTT--TTTCATCAATCG-
** * * * * * * ** * * ** *
1670838 TCTGTCCGTCGGCTTAGA-ATCGGGAGACTT-CTTTATCCATTGTTTGCCTGTTAGCTTAGTC-C
61 TCTACCCATCAGCTTAGACCT-AGAAGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * * * *
1670900 TGGGAGACTTCCTTTATCAACCCTCTGCCCATCAACTTAGA-CCTAGGAGACT-TTTTAATCAAT
125 -GAGAGA-TTTCTTTATTAATCATCTGCCCATC-GCTTAGACCCGA-GAGACTCTTTTCATCAAT
**
1670963 CGTCTGCTTGTCGGCTTAGACCCGG
186 CGTCTGCCCGTCGGCTTAGACCCGG
* ** * * * *
1670988 GAGACCTTTCCATCAATTGTCTACCTGCCGGTTTAGACCCGAGAGACTTTTTTATCAATTGTCTG
1 GAGA-CTTTCCATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTTTTTCATCAATCGTCTA
* *
1671053 CCCATCAGCTTAGACCTAGAAGACTTCCTTTATCAATCATCTGCCCGTTGGCTTAGACTCGGGAG
65 CCCATCAGCTTAGACCTAGAAGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTCGAGAG
* * * *
1671118 ATTTCATTTATTAATCATCTGCCCGTCAGCTTAGACTCGAGAGACTCTATT-ATCAATCGTATGC
130 ATTTC-TTTATTAATCATCTGCCCATC-GCTTAGACCCGAGAGACTCTTTTCATCAATCGTCTGC
1671182 CCGTCGGCTTAGACCCGG
193 CCGTCGGCTTAGACCCGG
* ** * * ** *
1671200 GAGACTTTTCCATCAATTATCTGCCCGTTGGCTTCA-ACCCTAGAGACTTTTT--T-TTTTGTCT
1 GAGAC-TTTCCATCAATTGTCTGCCTATCGGCTT-AGACCCGAGAGACTTTTTCATCAATCGTCT
* ** * * ** *
1671261 ACCCATCAGCTTAAACCCGGAAGACTT--TTTAATCAATCGTCTGCCCATTAGCTTAGACTCAAG
64 ACCCATCAGCTTAGACCTAGAAGACTTCCTTT-ATCAATCATCTGCCCGTCGGCTTAGACTCGAG
** ** * * * * *
1671324 AGACTTT-TCCATTAATTGTCTGCCCGTCGACTTAGACTCGGGAGACT-TTTCCATCAATCG-AT
128 AGA-TTTCTTTATTAATCATCTGCCCATCG-CTTAGACCCGAGAGACTCTTTTCATCAATCGTCT
* ** *
1671386 GCCCATTAGCTTAGACCCGA
191 GCCCGTCGGCTTAGACCCGG
* * * * * *
1671406 GAGAATTTCTTTATCAATTGTCTG-TTCATCGG-TTCAAACCCAAGAGACTTTTTATATCAATCG
1 GAGACTTTC--CATCAATTGTCTGCCT-ATCGGCTT-AGACCCGAGAGACTTTTT-CATCAATCG
* * * * * * * * *
1671469 TTTACCCATCAGCTTAG-TCTCGGGAGACTT-TTTTCATCAATTATCTACCCATCGGCTCAGAC-
61 TCTACCCATCAGCTTAGACCT-AGAAGACTTCCTTT-ATCAATCATCTGCCCGTCGGCTTAGACT
* * * * *
1671531 CTGGGAGATTTCCTTTATCAATCATCTGCCCATCGACTTAGACCCGGGAGACTTCCTTT-GTCAA
124 C-GAGAGATTT-CTTTATTAATCATCTGCCCATCG-CTTAGACCCGAGAGAC-TCTTTTCATCAA
* * * * *
1671595 TCATTTGCCTGTCGGCTTAGA-TCAG
185 TCGTCTGCCCGTCGGCTTAGACCCGG
* * ** *
1671620 TAGACTCTTCCATCAATCGTCTGCCTATTAGCTTAGACCCGAGAGA-TTTTTCCATTAATCGTCT
1 GAGACT-TTCCATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTTTTT-CATCAATCGTCT
* * * * * * * *
1671684 ACCTATTAGCTTAGA-CTAGGAGACTTTCTTTGTTAATCATCTGCTCGTCGGCTTAGACCCGAGA
64 ACCCATCAGCTTAGACCTAGAAGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTCGAGA
** * * * * * * * *
1671748 GACTGCCTTTGTTAATCATCTACCTATTGGCTTAGACCCAAGAGACTTCTTTTC-TTAACCATCT
129 GA-TTTCTTTATTAATCATCTGCCCA-TCGCTTAGACCCGAGAGAC-TCTTTTCATCAATCGTCT
* ** * * *
1671812 ACCTATCGACTTAGACTCGA
191 GCCCGTCGGCTTAGACCCGG
* * * ** * *
1671832 GAAACATTTCCATCAATTGTCTACCCT-TCGACTTAGACTTGAGAGACTTTTCCATCAATCGTTT
1 GAGAC-TTTCCATCAATTGTCT-GCCTATCGGCTTAGACCCGAGAGACTTTTTCATCAATCGTCT
* * * * * * * *
1671896 ACCCGTCTGCTTAGACCTGGAAGACTTCATTTGTCAATCATCTACTCGTCGGCGTAGACTCGAGA
64 ACCCATCAGCTTAGACCTAGAAGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTCGAGA
* ** * * *
1671961 GACTTT-TTCATTAAAAATTTGCTCATGGGCTTA-AGCCCGAGAGAC-CTTTTCATCAATCGTCT
129 GA-TTTCTTTATTAATCATCTGCCCAT-CGCTTAGA-CCCGAGAGACTCTTTTCATCAATCGTCT
* *
1672023 GCCCGTCGGCTTAGA-TCTG
191 GCCCGTCGGCTTAGACCCGG
* * * * * * * * *
1672042 GAGACTTTACCATCAATCGTTTGCCCATCGACTTAGGCCCAAGAGAGTTTTTCATCAATTGTCTG
1 GAGACTTT-CCATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTTTTTCATCAATCGTCTA
* * * * * * * * * * *
1672107 CCCCTCAACTTAGACCTAGGAGACTTCCTTTGTCAATCGTTTG-CCATCGACTTAGTCTTGAGAA
65 CCCATCAGCTTAGACCTAGAAGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTCGAGAG
* * * * ** * * * *
1672171 ACTTCTTTTATCAATCGTCTGCCCATTGGCTTAGAATC-AGGAGACT-TCTTCATCCATTGTCTA
130 ATTTC-TTTATTAATCATCTGCCCA-TCGCTTAGACCCGA-GAGACTCTTTTCATCAATCGTCTG
** * *
1672234 CCCGTTAGCTTAGTCTCGG
192 CCCGTCGGCTTAGACCCGG
*** * * * ** * *
1672253 GAGAC-TTCCTTTATCAACCCTTTGCCCATCGACTTAGAGTCGGGAGACTTTCTCATCAATCGTC
1 GAGACTTTCC---ATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTTTTTCATCAATCGTC
* * * ** * * * ** * *
1672317 TGCCCGT-TGACTTA-AAGTCGGGAGACCTT--TCTATCAATCATCAACCTGTCGGCTTAGACCC
63 TACCCATCAG-CTTAGACCT-AGAAGA-CTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * * * *
1672378 AAGAGACATTTC--CATCAATCGTCTGCCCATCGAGTTAGA-CCTAGTTGACTTCCTTT-ATCAA
125 --GAGAGATTTCTTTATTAATCATCTGCCCATCG-CTTAGACCCGAG-AGAC-TCTTTTCATCAA
* * *
1672439 TCATCTGCCCGTCAGCTTAAACCCGG
185 TCGTCTGCCCGTCGGCTTAGACCCGG
** * * * * **
1672465 GAGAC-TTCCTTTATCAATCATCTGCCCATCAGCTTAGACTCGAAAGACTTCTTTTGTCAATCGT
1 GAGACTTTCC---ATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTT-TTTCATCAATCGT
* * * * * ** * *
1672529 CTGCCCATCGGCTTAGACTTAGGAGACAATTCC---ATCAATCGTCTATCCATCGGCTTAGACTT
62 CTACCCATCAGCTTAGACCTAGAAGAC--TTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * * *
1672591 G-GAACACTTCCTTTGTCAATCGTCTGCTCGTCGGCTTAGACCCGAGAGACT-TTTTCATCAATC
125 GAG-AGA-TTTCTTTATTAATCATCTGCCCATC-GCTTAGACCCGAGAGACTCTTTTCATCAATC
* * * * *
1672654 ATCTGCCTGTTGGTTTAGACACGG
187 GTCTGCCCGTCGGCTTAGACCCGG
* ** * * * *
1672678 GAGAC-TTCCTTTATTAATCATCTACCTGTCGGCTTAGATCCGGGAGAC-TTTTCTATCAATCGT
1 GAGACTTTCC---ATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTTTTTC-ATCAATCGT
* ** ** ** * ** * ** *
1672741 CTGCCTGTTGGCTTAGACCCGGGAGACTTCCTTTATCAATTGTTTGCCCGTTAGCTTAAAC-CTG
62 CTACCCATCAGCTTAGACCTAGAAGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTC-G
** * ** * * * * * * *
1672805 AGAGACTTT-TCCATCAATTGTATGCCCGTCGGCTTAAACTCGGGAGACTTCCTTT-ATCAATTG
126 AGAGA-TTTCTTTATTAATCATCTGCCCATC-GCTTAGACCCGAGAGAC-TCTTTTCATCAATCG
* * * *
1672868 TCTGCCTGTCAGCTTAGACCTGA
188 TCTGCCCGTCGGCTTAGACCCGG
* ** * * * * * * *
1672891 GAGAGTTTTCCATCAATCATCTACCTGTCAGCTTAAACTCGTGAGACTTCCTTT-GTCAATCGTC
1 GAGA-CTTTCCATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTT--TTTCATCAATCGTC
* * * * *
1672955 TACCCATC-GACTTAGACC-CGAGAGACTT-TTTTCTCAATCATCTGCCCATCGGCTTAGACCCG
63 TACCCATCAG-CTTAGACCTAGA-AGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * *** * * ** *
1673017 GGAGATTTTCTTTATCAATCGTCTGCTTGTCAGCTTAGGCCC-AGGAGACTTTTTTTGTTAA---
126 AGAGA-TTTCTTTATTAATCATCTGCCCATC-GCTTAGACCCGA-GAGACTCTTTTCATCAATCG
* * * * *
1673078 T-TACCCATCAGCTCAGACCTGG
188 TCTGCCCGTCGGCTTAGACCCGG
*** * * * * * **
1673100 GAGACTTCTTTTGTCAATTGTCTGCCCATCAGTTTAGACCCGAGAGACTTTTCCTTCAATTATCT
1 GAGAC-T-TTCCATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTTTTTCATCAATCGTCT
* ** * * * * * * ** * *
1673165 AGCTGTCGGTTTAAACCT-GAGACACTTCATTTGTCAATCATCTGCCTATCGGCTCAGACCCGAG
64 ACCCATCAGCTTAGACCTAGA-AGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTCGAG
** * * * * * * ** *
1673229 AGACTTT-TCCATCAATCATCTACCCATCGACTTAAACTCGGGAGACTTTTTTTTGTTAATCGTC
128 AGA-TTTCTTTATTAATCATCTGCCCATCG-CTTAGACCCGAGAGAC-TCTTTTCATCAATCGTC
* * *
1673293 TGCTCATCGACTTAGACCCGG
190 TGCCCGTCGGCTTAGACCCGG
* * * ** * *
1673314 GAGATTTTTCCATCAATCG-ATG-CTCATCGGCTTAGACTTGAAAGACTTCCTTT-GTCAATCGT
1 GAGA-CTTTCCATCAATTGTCTGCCT-ATCGGCTTAGACCCGAGAGACTT--TTTCATCAATCGT
* * * * ** * * * *
1673376 CTGCCTATCGGCTCAGACCT-GAGAGACTTCCTTTATCAATTGTCTACCCATCGACTTAGATTCG
62 CTACCCATCAGCTTAGACCTAGA-AGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTCG
* * *** * * *
1673440 AGAGACTTCTTT-TGTCAATTATCTGCCTGCCAGCTCAGACCCGGGAGACTTCCTTT-ATCAATC
126 AGAGATTTCTTTAT-T-AATCATCTGCCCATC-GCTTAGACCCGAGAGAC-TCTTTTCATCAATC
* *
1673503 ATCTGCCCGTCGGCTTAGACCCGA
187 GTCTGCCCGTCGGCTTAGACCCGG
1673527 GAGACTTTC
1 GAGACTTTC
1673536 TTTGTCAATC
Statistics
Matches: 2549, Mismatches: 679, Indels: 325
0.72 0.19 0.09
Matches are distributed among these distances:
205 4 0.00
206 29 0.01
207 78 0.03
208 60 0.02
209 252 0.10
210 404 0.16
211 359 0.14
212 691 0.27
213 532 0.21
214 110 0.04
215 30 0.01
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.33
Consensus pattern (210 bp):
GAGACTTTCCATCAATTGTCTGCCTATCGGCTTAGACCCGAGAGACTTTTTCATCAATCGTCTAC
CCATCAGCTTAGACCTAGAAGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACTCGAGAGA
TTTCTTTATTAATCATCTGCCCATCGCTTAGACCCGAGAGACTCTTTTCATCAATCGTCTGCCCG
TCGGCTTAGACCCGG
Found at i:1671326 original size:81 final size:81
Alignment explanation
Indices: 1671188--1671409 Score: 225
Period size: 81 Copynumber: 2.7 Consensus size: 81
1671178 ATGCCCGTCG
** * * *
1671188 GCTTAGACCCGGGAGACTTTTCCATCAATTATCTGCCCGTTGGCTTCA-ACCCTAGAGACTTTT-
1 GCTTAGACCCGGGAGACTTTTCCATCAATCGTCTGCCCATTAGCTT-AGACCCAAGAGACTTTTC
**
1671251 TTTTTTGTCTACCCATC
65 TTAATTGTCTACCCATC
* * ** *
1671268 AGCTTAAACCCGGAAGACTTTTTAATCAATCGTCTGCCCATTAGCTTAGACTCAAGAGACTTTTC
1 -GCTTAGACCCGGGAGACTTTTCCATCAATCGTCTGCCCATTAGCTTAGACCCAAGAGACTTTT-
* *
1671333 CATTAATTGTCTGCCCGTC
64 C-TTAATTGTCTACCCATC
* * *
1671352 GACTTAGACTCGGGAGACTTTTCCATCAATCG-ATGCCCATTAGCTTAGACCCGAGAGA
1 G-CTTAGACCCGGGAGACTTTTCCATCAATCGTCTGCCCATTAGCTTAGACCCAAGAGA
1671410 ATTTCTTTAT
Statistics
Matches: 114, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
80 1 0.01
81 51 0.45
83 24 0.21
84 38 0.33
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.32
Consensus pattern (81 bp):
GCTTAGACCCGGGAGACTTTTCCATCAATCGTCTGCCCATTAGCTTAGACCCAAGAGACTTTTCT
TAATTGTCTACCCATC
Found at i:1672204 original size:127 final size:128
Alignment explanation
Indices: 1672053--1672289 Score: 280
Period size: 127 Copynumber: 1.9 Consensus size: 128
1672043 AGACTTTACC
* ** * * *
1672053 ATCAATCGTTTGCCCATCGACTTAGGCCCAAGAGAGTTTTTCATCAATTGTCTGCCCCTCAACTT
1 ATCAATCGTCTGCCCATCGACTTAGAACCAAGAGACTTCTTCATCAATTGTCTACCCCTCAACTT
* * *
1672118 AGACCT-AGGAGACTTCCTTTGTCAATCGTTTG-CCATCGACTTAGTCTTGAGAAACTTCTTTT
66 AG-CCTCAGGAGACTTCCTTTATCAACCCTTTGCCCATCGACTTAGTCTTGAGAAACTTCTTTT
* * * * * * * *
1672180 ATCAATCGTCTGCCCATTGGCTTAGAATCAGGAGACTTCTTCATCCATTGTCTACCCGTTAGCTT
1 ATCAATCGTCTGCCCATCGACTTAGAACCAAGAGACTTCTTCATCAATTGTCTACCCCTCAACTT
* *
1672245 AGTCTCGGGAGACTTCCTTTATCAACCCTTTGCCCATCGACTTAG
66 AGCCTCAGGAGACTTCCTTTATCAACCCTTTGCCCATCGACTTAG
1672290 AGTCGGGAGA
Statistics
Matches: 89, Mismatches: 19, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
126 2 0.02
127 75 0.84
128 12 0.13
ACGTcount: A:0.22, C:0.27, G:0.17, T:0.34
Consensus pattern (128 bp):
ATCAATCGTCTGCCCATCGACTTAGAACCAAGAGACTTCTTCATCAATTGTCTACCCCTCAACTT
AGCCTCAGGAGACTTCCTTTATCAACCCTTTGCCCATCGACTTAGTCTTGAGAAACTTCTTTT
Found at i:1672469 original size:85 final size:85
Alignment explanation
Indices: 1661348--1673751 Score: 2181
Period size: 85 Copynumber: 146.5 Consensus size: 85
1661338 GAGATTTTCC
* * * * * * * **
1661348 ATCAATCATTTGCCCATCAGCTTAGACCCGTGAGACTTCTCCATCCATTATCTGCCCATCGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*
1661413 AGACCTGGGAGACTTCATTT
66 AGACCTGGGAGACTTCCTTT
* * * * * * * *
1661433 GTCAATCGTCT-CTCCATCAGCTTAGACTCGAGAGACTTTTTCATCAATCGTCTACCCGTCGTCT
1 ATCAATCGTCTGC-CCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCT
* * *
1661497 TAGACCCGAGAGACCTT--TTC
65 TAGACCTGGGAGA-CTTCCTTT
* * * * * * * *
1661517 ATCAATTCGTTTGCCCTTCGGCTTAGA-CCTAGACACTTTTCCATCAATCATTTGCCCATTGACT
1 ATCAA-TCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCT
** * *
1661581 TAGACC-GATAGAGTT--TTCC
65 TAGACCTGGGAGACTTCCTT-T
* * * *** * *
1661600 ATCAATCGTCTTCCTC-TCAGCTTAGA-CCTAGGAGACTTCTTTTGTCAATCATCTACCCATCGG
1 ATCAATCGTCTGCC-CGTCGGCTTAGACCCGA-GAGACTT-TTCCATCAATCGTCTGCCCATCGG
* * ** *
1661663 CTTAGTCC-GAAGAGACTTGATAT
63 CTTAGACCTG-GGAGACTTCCTTT
* * * * *** **
1661686 ATCAATCGTCTACCCATCGGCTTAG-CCTTG-GAGACTTTTCCATCCATTACCTGCCTGTCGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACC-CGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCT
** **
1661749 TAGACCTAAGAGACTTTGTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * * * *
1661770 ATCAATCGTCTGCTCGTCGACTTAGACTCGAGAGACTTTTTCATCAATCATCTGCCTATCGACTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
** *
1661835 AGACCCAGGAGACCTT--TTC
66 AGACCTGGGAGA-CTTCCTTT
* * * * * * **
1661854 ATCAATCGTTTGCCCGTCGGCTTAGA-CCTAGAGACTTTTCCATTAATTGTTTGCTCATCAACTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* * *
1661918 AGA-CTCGAGAGAGTT--TTCC
66 AGACCT-GGGAGACTTCCTT-T
* * * * * * * **
1661937 ATCAATCATTTTCCCTTTGGCCTAGA-CCTAGGAGACTTCCTT-TGTCAATCGTCTGCCCATCGG
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTT--TTCCATCAATCGTCTGCCCATCGG
* * *
1662000 CTTAGTCCTGAGAGACATCCTTT
63 CTTAGACCTGGGAGACTTCCTTT
* * * ** * * * * ** **
1662023 ATCAATCATCATCTGCCCGTCAGCTTATAATCGGGAGACTTCTT-CA-CCATTGTTTGCCTGTTA
1 ATC-A--ATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT-TTCCATCAATCGTCTGCCCATCG
* * *
1662086 GCTTAGTCTTGGGTGACTTCCTTT
62 GCTTAGACCTGGGAGACTTCCTTT
* * * * ** * * * * *
1662110 ATCAACCCTCTACCCATCGGCTTAGACTTGGGAGACTTTTTCATCAATCGTTTGCTCATCAGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*
1662175 AGACCTGAGAGA---CCTTT
66 AGACCTGGGAGACTTCCTTT
* ** * *
1662192 CCATCAATCGTCT-ACC-TACTGGCTTAGACCTAATAGACTTTTCCATCAATCGTCTACCCATCG
1 --ATCAATCGTCTGCCCGT-C-GGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCG
** * *
1662255 GCTTAGACCCAGAAGACTTCTTTT
62 GCTTAGACCTGGGAGACTTCCTTT
* * * ** * * ** * * * *
1662279 ATCAATCATCTACCCATTAGCTTAGACTCGGGAGACTTTGTTTATTAATCATTTGCCTATCGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTT-TCCATCAATCGTCTGCCCATCGGCT
*** **
1662344 TAGACCCAAGAGACTTTTTTT
65 TAGACCTGGGAGACTTCCTTT
* * * ** * * * * *
1662365 GTCAATTGTTTGCCCGTCAACTTAGACTCGAGAGACTTTTCCATCAATCATCTGCTCGTTGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* ** *
1662430 ATACCCAGAAGACTT-CTTT
66 AGACCTGGGAGACTTCCTTT
*** * * * * * * * * * **
1662449 ATTTTTTGTCTACCCGTCGGCTTAGAGCCGAAAGACTTTTTCATTAATTGTCTGCTCGTTAGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*
1662514 AGA-TTGAGGAGACTT--TTT
66 AGACCTG-GGAGACTTCCTTT
* * * ** * * * * * *
1662532 CATTAATTGTCTACTTGTCGACTTAGACTCGGGAGACTTTTCCATCAATCGAC-GTCCATCAGCT
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCT
* * *
1662596 TAGACCCGAGAGAATTCCTTT
65 TAGACCTGGGAGACTTCCTTT
* * * ** * * * * * * * * ** *
1662617 ATTAATCTTTTGTTCGTCAGTTTAAACCTGGGAGAC-TTT--GTCAATCGTTTACCTGTCGACTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* **
1662679 AG-TCTCGGGAGACTTTTTTT
66 AGACCT-GGGAGACTTCCTTT
* ** ** * * * * * * * * * **
1662699 GTCAATTATCTATCCATCAGCTTAAACCTGAGAGACTTCCTT-TATCAATCTTTTACCTATCAAC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
*
1662763 TTAGACCCGGGAGACTTCCTTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * * * * * ** **
1662785 GTCAATCGTTTGCCTGTAGGCTTAGATCC-AGTAGACTCTTCCATCAATCGTATACTTATCAACT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAG-AGACTTTTCCATCAATCGTCTGCCCATCGGCT
**
1662849 TAGACCTAAGAGA-TT--TTT
65 TAGACCTGGGAGACTTCCTTT
* * ** * *** * * * **
1662867 CCATCAATCATCTACCAATCGGCTTAGACCCGAGAAACTTCTTTTGTTAATCATCTGCTCATCAA
1 --ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT-TTCCATCAATCGTCTGCCCATCGG
* * ***
1662932 CTCAAACCCAAGAGACTT-CTTCT
63 CTTAGACCTGGGAGACTTCCTT-T
* * ** * * * * *
1662955 ATCAATCATCTACCTATCGGCTTAGACCCAAGAGATTTCTTTT-C-TTAACCGTCTGCCTATCGA
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGA---CTTTTCCATCAATCGTCTGCCCATCGG
* * *
1663018 CTTAGACCTGAGAAACTT--TTCC
63 CTTAGACCTGGGAGACTTCCTT-T
* * ** * * * * * * *
1663040 ATCAATTGTCTACCTTTCGACTTAGACTCGAGAGACTTTTCCATTAATCGTCTACGCGTTGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
**
1663105 AGACCTGGGAGACTT-CTCC
66 AGACCTGGGAGACTTCCTTT
* ** ** * *** * * *
1663124 ATCCATTATCTGCCCGTCGGCTTAGACTTGGGAGACTTTGTTTGTCAATCATCTACCCATTGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTT-TCCATCAATCGTCTGCCCATCGGCT
* * *
1663189 TAGAACTGGAAGACTTTCTTT
65 TAGACCTGGGAGACTTCCTTT
* *** * * * *
1663210 GTCAATCGTCTGCTTATCGGCTTAGACTCGAGAGAGTTTTCCATCAATAGTCTACCCATCGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* * * *
1663275 AGACTTAGGACA-TTTCTTT
66 AGACCTGGGAGACTTCCTTT
** * ** * * * ** * * * ** *
1663294 CATCAATTATTTGCCTATCTGCTCAGACCCAAGAGACTTCCTT-TGTTAATCATCTACCTGTTGG
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGG
* *
1663358 CTTAGACTTGGGAGACTTCTTTT
63 CTTAGACCTGGGAGACTTCCTTT
* * * * * * * * *
1663381 CTCAATCGTTTGCCCATCTGCTTAAACCAGA-AGACTTTTCCATCAATCGTCTACCTATCGACTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* ** *
1663445 AG-GCTCAAGAGACTT--TTCC
66 AGACCT-GGGAGACTTCCTT-T
** * * * ** * * *
1663464 ATCAATCGTCTGCCTATCGGCTTAGACCCGGGAGACTTTTTCATCCATTATCTGTCCGTCAGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* * * *
1663529 AGACTTGGAAAACTTCATTT
66 AGACCTGGGAGACTTCCTTT
* * *** * * *
1663549 GTCAATCGTCTGCCCGTCGGCATAGACTTAAGAGAC-TTT-CATTGTCAATCGTTTGCTCATTGG
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCA---TCAATCGTCTGCCCATCGG
* ** *
1663612 CTTAGTCCCAGGAGACTTCCTCT
63 CTTAGACCTGGGAGACTTCCTTT
* * ** * * * * * * **
1663635 ATCGATCATCAACTCGTCAGCTTAGACTCGAGAGACTTCTT-CATCCATTGTCTGCCCGTTAGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT-TTCCATCAATCGTCTGCCCATCGGCT
* * * *
1663699 TAGTCTTGAGAGGCTTCCTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * * * * *
1663720 ATCAACCCTCTGCCCATCGGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGACTC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* *
1663785 AGACCCGGGAGACCTT--TCT
66 AGACCTGGGAGA-CTTCCTTT
* ** * ** ** * **
1663804 ATCAATCGTCTACCTATCGACTTAGAGTCGAGAGACTTTTCCATCTTTTGTCTGCCCATCAACTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* **
1663869 AGACCCGAAAGACTTCCTTT
66 AGACCTGGGAGACTTCCTTT
* * * * ** * * * ** *
1663889 ATCATTC-ACTTGCCCATTGGCTTAGACCTAAGAGACTTCCTT-TATTAATCGTTTGCTTATCGA
1 ATCAATCGTC-TGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGG
*
1663952 CTTAGACCCGGGAGACTT-CTTCT
63 CTTAGACCTGGGAGACTTCCTT-T
* * * * * * * *
1663975 GTCAATCATCTGCCCGTCGGCTTAGA-CCTAGGACACTTTTCCATCAATCGTCTACCCGTTGACT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTTTTCCATCAATCGTCTGCCCATCGGCT
* *
1664039 AAGA-CTCGAGAGACTT--TTT
65 TAGACCT-GGGAGACTTCCTTT
* * * * * * * *
1664058 CATCAATCGCCTACCCATCGGCTTAGATCCGAGAGACTTTTCCTTCAATCGTCTACCTATCGGAT
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCT
* *
1664123 TAGACCTGAGAAACTTCCTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * ** * * * * * *
1664144 GTCAATCATCTACCCATTAGCTTGGACCC-AGGAGAC--TTCCTTTGCCAACCATCTGCCCGTCA
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTTTTCC-AT--CAATCGTCTGCCCATCG
* * *
1664206 GCTTAGA-TTCGGTAGA-TT-CTTCC
62 GCTTAGACCT-GGGAGACTTCCTT-T
* ** * * ** * * * * * * *
1664229 ATCAATCATCAACCTGTCAGCTTAGACTTGGGAGACTTTTCCATCAATCATTTGCTCGTCAGTTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* * *
1664294 AGACCCGAGAGACTTTCTTT
66 AGACCTGGGAGACTTCCTTT
* ** * * * * * ** * *
1664314 GTCAATTATTTGCCCATCGACTCAAACCCGAGAGACTTCCTT-TGTCAATTGTCTGCCAATCGGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
* * *
1664378 TTAGACTTGGGAGATTTCTTTT
64 TTAGACCTGGGAGACTTCCTTT
* ** * ** * ** * * * * * *
1664400 CTCAATCGTCTGCATGTCGACTTAGACTTGGGAGACTTTTTTATGAATCGTTTACCTATTGACTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* * *
1664465 AG-GCTCGAGAGACTT--TATC
66 AGACCT-GGGAGACTTCCT-TT
* * * * * * ** * * *
1664484 ATCAATAGTTTGCCCATCGGCTTAGACTCGAAAGACTTCTT-CATCCATTATCTACCCACCAGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT-TTCCATCAATCGTCTGCCCATCGGCT
* **
1664548 TAGACCTAGGAGACTTTGTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * * * * *
1664569 GTTAATCGTTTACCTGTCGGCTTAGACTC-AGGAGACTTCTT-CATCAATCATCTGCCC-TCCAG
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTT-TTCCATCAATCGTCTGCCCAT-CGG
*
1664631 CTTAGACTTGGGAGA---CCTTT
63 CTTAGACCTGGGAGACTTCCTTT
* * * * * * * * * * * **
1664651 CCATTAATCATCTACCCGTCAGCCTAAACTCG-GAGACTTTTCCACCAATTGTCTACCCACCAAC
1 --ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGC
* **** * * *
1664715 TTAAACCCAAAACAGTT--TTCC
64 TTAGACCTGGGAGACTTCCTT-T
* * * *** * * *
1664736 ATCAATCATCTGCCCCTCGGCTTAGACCCAAGAGACTTTCTTTGTCAATCGTTTACCCGTCGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTT-TCCATCAATCGTCTGCCCATCGGCT
* ** *
1664801 TAGTCCCAGGAGACTTCTTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * * * * * * **
1664822 ATCAATCATCAGCCCGTTGACTTAAACCCGGGAGACTTCTT-CATCCATTGTCTGCCCGTTAGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT-TTCCATCAATCGTCTGCCCATCGGCT
* *
1664886 TAGTCTTGGGAGACTTCCTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * * ** * * * * *
1664907 ATCAACCCTCT-ACCATCGGCGTAGACTTGGGAGACTTTTTCATCAATCATCTGCCCGTCGACTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
1664971 AGA-CTAGGGAGAACTTTCC---
66 AGACCT-GGGAG-AC-TTCCTTT
* * * ** * * *** * * *
1664990 ATTAATTGTCTACTTGTCAGTTTAGAGTTGCA-AGACTTTTCCATCAATCGTCTACCCGTTGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCG-AGAGACTTTTCCATCAATCGTCTGCCCATCGGCT
***
1665054 TAGACCCAAGAGACTTCCTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * * * * *
1665075 ATTAATCGCCTACCCGTCGGCTTAGACCCAAGAGACTTCCTT-TATCAATCATCTGCCCGTCGAC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
** **
1665139 TTAGACCTAAGAGACTTTTTTTT
64 TTAGACCTGGGAGAC-TTCCTTT
* * * * * * * *
1665162 GTCAATCGTCTGCCCTTCGGCTTAGACCTGAGAAACTTTTCCATCAATCGTCT-ACTAGTTGACT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCA-TCGGCT
* * *
1665226 TGGA-CTCGAGAGACTT--TTCC
65 TAGACCT-GGGAGACTTCCTT-T
** * * * * * * * * * * **
1665246 ATCAATCACCTGCCTGTAGGCTTTGACCCAAAAAACTCTTCCTTCAATCGTTTGCCCATTGATTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* *
1665311 AGA-CTCAGGAAACTTCCTTT
66 AGACCT-GGGAGACTTCCTTT
* * * ** * * * ** * * * *
1665331 GTCAATCATCTTCCTATTGGCTCAGACCCGGGAGACTTCTTTTATTAATCATTTGCCCGTCGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT-TTCCATCAATCGTCTGCCCATCGGCT
* * * *
1665396 TAAACCTAGAAGACTTTCTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * ** * * * * *
1665417 GTCAATTGTTTGCTCGTCGGCTTAGACATGGGAAACTTTTCCATCAATCGTCTGCCTATTGGCTC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*
1665482 AGACCCGGGAGACTT-CTTT
66 AGACCTGGGAGACTTCCTTT
*** * * * * * * * **
1665501 ATTTTTCGTCTACCCATCAGCTTAGACTCGGGAGACTTTTTCC-TCAATCATCTGCCCGTTAGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGAC-TTTTCCATCAATCGTCTGCCCATCGGCT
*
1665565 TAGACTCAT--GAGACTT--TTCC
65 TAGAC-C-TGGGAGACTTCCTT-T
* * * * * * * * * * *
1665585 ATTAATTGTCTACCCATCAGCTTAGACTCGGGAGATTTTTCTATCAATCG-ATGCCTATCGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* ** * *
1665649 AGACTTAAGAGAATTCCCTT
66 AGACCTGGGAGACTTCCTTT
* * *** * * * * ** * * ** *
1665669 GTCAATCATCTATTCATTGGCTCA-ATCTCGAGAGACTTCTTTTATCAATCGTTTACCTGTCGAC
1 ATCAATCGTCTGCCCGTCGGCTTAGA-CCCGAGAGACTT-TTCCATCAATCGTCTGCCCATCGGC
* * **
1665733 TTAGTCTTGGGAGACTTTTTTT
64 TTAGACCTGGGAGACTTCCTTT
* * ** * * * * * * ** *
1665755 GTTAATTATTTTCCCATCGACTCAGACTC-ACGAGACTTTCTTTATCAATCGTCTGCCCATCGAC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTTT-TCCATCAATCGTCTGCCCATCGGC
* **
1665819 TTA-AACTCGAAAGACTTCCTTT
64 TTAGACCT-GGGAGACTTCCTTT
* * * * ** * * * * * *
1665841 GTCAATTGTTTGCCTGTCTACTTAGATCTG-GTAGACTCTTCCATCAATCGTCTGCCTATTGACT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAG-AGACTTTTCCATCAATCGTCTGCCCATCGGCT
* * *
1665905 TAGACCCGAGAGACTT--TTCC
65 TAGACCTGGGAGACTTCCTT-T
* * * * * * * *
1665925 ATTAATTGTCTACCCGTCAGCTTAGACCCGAGAGACTTTCTTTC-TCAATCATCTGCTCGTCGGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGAC-TT-TTCCATCAATCGTCTGCCCATCGGC
* * * * * *
1665989 TCAAACCCGAGAGACTTTCTTC
64 TTAGACCTGGGAGACTTCCTTT
* * ** ** * * * * *
1666011 GTCAATTGTCTATCTATCGGCTTAGACCTGAAAGACTTCATTTC-TCAATCCTCTGCCCGTCGGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
** *
1666075 TTAGACCTTAGAAACTT--TTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * * * * * * *
1666095 CATAAATTGTCTACCCTTTGACTTA-ACCTCGGGAGACTTTTTCATCAATCATCTGCCCATCGGT
1 -ATCAATCGTCTGCCCGTCGGCTTAGACC-CGAGAGACTTTTCCATCAATCGTCTGCCCATCGGC
** *
1666159 TTAGACCAAGGAGACTT-CTCT
64 TTAGACCTGGGAGACTTCCTTT
* * ** **** * * * ** * **
1666180 GTCCATTATCTGGTTATCAGCTTAGACCTGGGAGACTTCGTT-TGTCAATCGTCTCCCCATTTGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
* * *
1666244 TTAGA-ATCGAGAGACCTT--TTC
64 TTAGACCT-GGGAGA-CTTCCTTT
* * * * * * *
1666265 ATCAATCGTCTACCCGTCGACTTAGACCTGGGTA-ACCTTTCCATCAATTGTCTGCCCGTCGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAG-AGACTTTTCCATCAATCGTCTGCCCATCGGCT
*
1666329 TAGACCT-AGAGACTT--TTCT
65 TAGACCTGGGAGACTTCCTT-T
* * * * * * * *
1666348 ATCAATCGTTTGCCCGTCGACTTAGACCCGGGAGAGTTTTCCATCAATCATTTGCCCTTTGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* *
1666413 AGGCCTAGGAGACTTCCTTT
66 AGACCTGGGAGACTTCCTTT
* * ** * * * * *
1666433 TTCAATCGTCTGCCCATTAGCTTAG-TCCAAGGAGACTTCATT-TATCAATTGTCTGCCCATCAG
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTT--TTCCATCAATCGTCTGCCCATCGG
* * **
1666496 CTTAGACCCGAGAGACTTCC-CC
63 CTTAGACCTGGGAGACTTCCTTT
* ** * * *** * * ** *
1666518 ATCCATTATCTGTCCGTCGGCTTAGA-CCTAGGAGACTTTGTTTGTCAATTGTCTACCTGTTGGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTTT-TCCATCAATCGTCTGCCCATCGGC
**
1666582 TTAGA-CTCAGAGACTT--TTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * * * ** * * * * *
1666601 CATAAATCATCTACCTGTCGACTTATACTTGGGAGACCTTTCCATCAATTGTTTGCCCGTCGGCT
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCT
*
1666666 TAGACCT-GGAGACTT--TTCC
65 TAGACCTGGGAGACTTCCTT-T
* * * * * * * * * *
1666685 ATCAATCGTTTTCCAGTCGACTTAGACCCGGGAGAGTTTTCCATCAAACGTCTGCCCGTTGTCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*** *
1666750 AGACCTCATAGACTTCTTTT
66 AGACCTGGGAGACTTCCTTT
* * * * * * *
1666770 GTCAATCGTTTGCCCATCGGCTTAG-TCCGAAGAGACTTCATT-TATCAATCGTCTTCCCGTCGG
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCG-AGAGACTT--TTCCATCAATCGTCTGCCCATCGG
*
1666833 CTTAGACCTTGGAGATCTCTCC---
63 CTTAGACCTGGGAGA-CT-TCCTTT
* ** * * * *** ** * **
1666855 ATCCATTATCTGCCCATTGGCTTAGA-CCTAGGAGACTTTGTTTGTCAATCGTCTAACCGTCAAC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTTT-TCCATCAATCGTCTGCCCATCGGC
* *
1666919 TTAGACTTGAGAGACTT--TTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * *
1666939 CATCAATCGTCTACCCATCGGCTTAGA-CTGATGATACCTTTT-CATCAATCGTCTGCTCATCGG
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGA-CTTTTCCATCAATCGTCTGCCCATCGG
* *
1667002 CTTAGACCT-AGAGACTT--TTCC
63 CTTAGACCTGGGAGACTTCCTT-T
* * * * * ** * *
1667023 ATCAATCGTTTGCCTGTCGACTTAGACCC-AGGAGAGTTTTTCATCAATTATCTTCCCCTCGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTTTTCCATCAATCGTCTGCCCATCGGCT
* *
1667087 TAGACCTAGGAGACTT-TTTGT
65 TAGACCTGGGAGACTTCCTT-T
* * * * * * * * * * * * * *
1667108 GTCAATTGTCTGCCCATCGACTTAGTCTCGGGACACTTCCTT-TATTAATTGTCTGTCCGTCAGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
* * *
1667172 TTAGA-ATCGAGAGACTT-CTTC
64 TTAGACCT-GGGAGACTTCCTTT
* * ** * * * ** * * * * *
1667193 ATCCATTGTCTGCCCGTTAGCTTAGTCCTGGGAGACTTCCTTTAATGATTCCTCTGCCTATCGGT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
*
1667258 TTAGA-CTGGAAAGACTT--TTT
64 TTAGACCTGG-GAGACTTCCTTT
* * * ** ***
1667278 CATCAATCATCTGCCCGTCGGCTTAGACTCGAGAGACCTTTT-CATCAATCATCAACTTGTCGGC
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGA-CTTTTCCATCAATCGTCTGCCCATCGGC
** *
1667342 TTAGAGTTGGGAGACTT--TTCC
64 TTAGACCTGGGAGACTTCCTT-T
* * * * * *
1667363 ATCAATCATCTACCTGTCAGCTTAGACCC-AGGAGACTTCCTT-TATCAATCTTCTGCCCATCGG
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTT--TTCCATCAATCGTCTGCCCATCGG
* ** *
1667426 CTTAGACTTAAGAGACTTCTTTT
63 CTTAGACCTGGGAGACTTCCTTT
* ** * *
1667449 GTCAATCGTCTGCCCGTCGGCTTAGA-CTTAGAGACTTTTCCATCAATTGTCTACCCATCGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
** *
1667513 AGACCTGAAAGAGTT--TTCT
66 AGACCTGGGAGACTTCCTT-T
* * * * * * * * **
1667532 ATTAATCATCTACCCCTTGACTTAGGCCCAAGAGACTTCCTT-TGTCAATCGTCTGCCCATCGGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
* * * *
1667596 TTAGTCGTGAGAGACTTCTTTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * * * * * **
1667618 ATCAATCATC-GACCCATCGGCTTAGACTCGGGAGACTTCTT-CATCCATTGTCTGCTCGTTAGC
1 ATCAATCGTCTG-CCCGTCGGCTTAGACCCGAGAGACTT-TTCCATCAATCGTCTGCCCATCGGC
* *
1667681 TTAGTCCTAGGAGACTTCCTTT
64 TTAGACCTGGGAGACTTCCTTT
* * ** * * * * * * *
1667703 ATCAACCCTCTGCCTATCAGCTTAGACTCGGGAGACTTTTTCATCAATCATTTGCCCGTCGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*
1667768 AGACCTGAGAGA---CCTTT
66 AGACCTGGGAGACTTCCTTT
* *** *** * * **
1667785 CCATCAATCATCTGCTTATCGGCTTAGAGTTGGGAGACTTTTCCATCAATCGTCTACCTGTCGGC
1 --ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGC
* *** *
1667850 TTGGACCCAAGAGACTTCATTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * * * * * *
1667872 ATTAATC-ACTTGCCTGAT-GACTTAGA-CCTAGGAGACTTCCTT-TATCAATCTTTTGCCCATT
1 ATCAATCGTC-TGCCCG-TCGGCTTAGACCCGA-GAGACTT--TTCCATCAATCGTCTGCCCATC
**
1667933 GGCTTAGACCTGGGAGACTTTTTTT
61 GGCTTAGACCTGGGAGACTTCCTTT
* * * * * ** * *
1667958 GTCAATCGTCTGCCTGTCGGCTTAGA-CCTAGGAAACTTTTCCATCAATCGTCTACCTGTTGACT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTTTTCCATCAATCGTCTGCCCATCGGCT
* * *
1668022 TAGACTTGAGAGACTT--TTCC
65 TAGACCTGGGAGACTTCCTT-T
** * * * * * *
1668042 ATCAATCACCTACCCATTGGCTTAGACCC-AGAAGACTATTCCTTCAATCGTCTGCCCGTCGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAG-AGACTTTTCCATCAATCGTCTGCCCATCGGCT
* * *
1668106 TAGACCCGAGAAACTTCCTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * * * ** * * * *
1668127 TTCAATCATCTTCCCATCGAG-TCAGACCCGGGAGACTTCTTTTATCAACCATCTGCCCGTCAGC
1 ATCAATCGTCTGCCCGTCG-GCTTAGACCCGAGAGACTT-TTCCATCAATCGTCTGCCCATCGGC
* * *
1668191 TTAGACCTAGAAGACTTTCTTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * ** * * * *** *
1668213 GTCAATCGTCTGCTCATTGGCTTAGACATGATAAACTTTTCCATCAATCATCTGCTTGTCGGCTC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*
1668278 AGACCTGGAAGACTT-CTTT
66 AGACCTGGGAGACTTCCTTT
*** * * * ** * **
1668297 ATTTTTTGTCTACCCATTAGCTTAGACCCGAGAGACTTTTTCC-TCAATCATCTGCCCATTAGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGAC-TTTTCCATCAATCGTCTGCCCATCGGCT
* * * *
1668361 TATA-CTCGTGAGTCTT--TTCC
65 TAGACCT-GGGAGACTTCCTT-T
* * * * ** * * * * ** *
1668381 GTCAATTGTCTGTCTGTCAACCTAAACTCGAGAGATTTTTCCATCAATC-AATGCCCATCGGCAT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*** * *
1668445 AGACCCAAGAGAATTCCCTT
66 AGACCTGGGAGACTTCCTTT
* * * * * * ** * * * * * *
1668465 GTCAATCATCTAG-TCATCGACTCA-ATCTTGGGAGACTTCCTT-CA-CAATCATTTACCTATCA
1 ATCAATCGTCT-GCCCGTCGGCTTAGA-CCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCG
* * * *
1668526 ACTTAG-TCTCGGGTGACCTT-TTTT
62 GCTTAGACCT-GGGAGA-CTTCCTTT
* * ** * * * * * * * *** *
1668550 GTTAATTATGTGCCCATCGACTCAAACCC-AGCAGACTTCCTT-TATCAATCGTGTGCTTGTCGA
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAG-AGACTT--TTCCATCAATCGTCTGCCCATCGG
*
1668613 CTTAGA-CTCGGAAGACTTCCTTT
63 CTTAGACCT-GGGAGACTTCCTTT
* * * * * * * * * * *
1668636 GTTAATCATTTGCCTGTCGGCTTAGATCCG-GTAGACTCTTCCATCTATCGCCTGCCTATCAGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAG-AGACTTTTCCATCAATCGTCTGCCCATCGGCT
* * * *
1668700 TATA-TTCGAGAGACTT--TTCC
65 TAGACCT-GGGAGACTTCCTT-T
* * * ** * * * * **
1668720 ATCAATTGTTTACCTATCGGCTTAGACCCGAGAGACTTTCTTTC-TCAATCATCAGCTCATCTAC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGAC-TT-TTCCATCAATCGTCTGCCCATCGGC
* * *
1668784 TCAGACCCGAGAGACTTCCTTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * * * * *
1668806 ATCAATCGTCTACCTGTCGGTTTACACTCGAGAGACTTCATAT-C-TCAATCGTCTCCCCGTTGG
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--T-TCCATCAATCGTCTGCCCATCGG
*** * *
1668869 CTTAGACCCAAGAAACTT--TTCC
63 CTTAGACCTGGGAGACTTCCTT-T
* * * * * * * * * * **
1668891 ATCAATTGTTTACCCGTTGACTTAAACTCGGGAGACTTTTCCATCAATTGTTTGCCTGTCGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
**** **
1668956 AGACCCAAAAGACTT-CTCC
66 AGACCTGGGAGACTTCCTTT
** ** * * * * *** * ** **
1668975 ATCCGTTAT-TACCCATCGGCTTAGACCTGGGAGACTTTATTTGTCAATCATCT-CATTATC-AA
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTT-TCCATCAATCGTCTGC-CCATCGGC
* *
1669037 TTAGACTTGAGAGACTT--TTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * * * * * * *
1669057 CATCAATCGTCTACCCATCGACTTAGACTCGGGAGACCTTTCCATCAATTGTTTGCCCCTCGACT
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCT
* *
1669122 TAGACCT-AGAGACTT--TTCC
65 TAGACCTGGGAGACTTCCTT-T
* * * ** * * * * *
1669141 ATCAATTGTGTGCCCATCAACTTAGACCCGGGAGAGTTTTCCATCAATTGTCTACCCCTCGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* * *
1669206 AGACCTAGGAAACTTTCTTT
66 AGACCTGGGAGACTTCCTTT
* * * * * * *
1669226 ATCAATCGTCTGCCCATCGACTTAG-TCTGAGGAGACTTCATT-TATCAATCGTTTACCCATCGG
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTT--TTCCATCAATCGTCTGCCCATCGG
**
1669289 CTTTA-ACCTGGGAGACTT-CTCC
63 C-TTAGACCTGGGAGACTTCCTTT
* ** * * * * ** * * * * * *
1669311 ATCCATTATCTACCCATCAG-TTAGA-CCTAGGAGACTTCGTT-TGTCAATCATTTACCCGTAGA
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTT--TTCCATCAATCGTCTGCCCATCGG
* **
1669373 CTTAGACTTGATAGACTT--TTT
63 CTTAGACCTGGGAGACTTCCTTT
* * * * * * *
1669394 CATCAATCATCTACCCGTCAGCTTAGATCC-AGGAGACCTTTT-CATCAATCATCTGCTCGTCGG
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGA-CTTTTCCATCAATCGTCTGCCCATCGG
* * *
1669457 CTTAGACATGGGAAACTT--TTCC
63 CTTAGACCTGGGAGACTTCCTT-T
* ** * * * *** * * *
1669479 ATCAATCATCTGCTTGTCGGCTCAGACCTG-GAAGACTTCTT-TATTTTTTGTCTACCCATTGGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAG-AGACTT-TTCCATCAATCGTCTGCCCATCGGC
**
1669542 TTAGACCCAGGAGACTT--TTT
64 TTAGACCTGGGAGACTTCCTTT
* * * ** * *** * * * * * ** *
1669562 CCTCAATCATCTGCCCATTAGCTTATAGTTGTGAGTCTTTTCCATCAATTGCCTGCCCGTCAACC
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCT
* *
1669627 TA-AACTCGAGAGA-TT--TTT
65 TAGACCT-GGGAGACTTCCTTT
** * * * * * * *
1669645 CCATCAATC-AATGCCCATCGGCTTAGACCCAAGAGA-ATTCCCTTGTCAATCATCTAG-TCATC
1 --ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCC--ATCAATCGTCT-GCCCATC
* * *
1669707 GACTCA-ATCTTGGGAGACTTCCTTT
61 GGCTTAGA-CCTGGGAGACTTCCTTT
* * ** ** * * * * *** * ** * *
1669732 A-CAATCATTTGCCTATCAACTTAGTCTCGGGTGACTTTTTTTGTTAATTATGTGCCCATCGACT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGAC-TTTTCCATCAATCGTCTGCCCATCGGCT
* * * *
1669796 CAAACCTAGCAGACTTCCTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * * * * ** * * ** *
1669817 ATCAATCGTGTGCCTGTTGACTTAGGCCTGAAAGACTTCCTT-TGTTAATC-ACTTGCCTGTTGG
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTC-TGCCCATCGG
* *
1669880 CTTAGATCC-GGTAGAC-T-CTTCC
63 CTTAGA-CCTGGGAGACTTCCTT-T
* * ** ** * ** * * *
1669902 ACCTATCGTCTGCCTATCAACTTATATTCGAGAGACTTTTCCATCAATTGTCTACCTATCGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* * *
1669967 AGACCCGAGAGACTTTCTTT
66 AGACCTGGGAGACTTCCTTT
* * * * * * * ** * ** *
1669987 CTCAATCATCAGCTCATCGGCTCAGACCAGAGAGACTTCCTT-TGTCAATCGTCTACCTGTCGGT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
* * *
1670051 TTAGA-CTCGAGAGACTTCATAT
64 TTAGACCT-GGGAGACTTCCTTT
* * * * *** * * * * * * *
1670073 CTCAATTGTCTGCCCATTGGCTTAGACTTAAGAAACTTTTCCATCAATTGTTTACCCGTTGACTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* *
1670138 A-AACTCGGGAGACTT--TTCC
66 AGACCT-GGGAGACTTCCTT-T
* * * * * * * ** *
1670157 ATCAATTGTTTGCCTGTCGGCTTAGACTCGAAAGACTTCTCCATCCATTAT-TACCCATCGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* *
1670221 AGACCTGGCAGACTTCATTT
66 AGACCTGGGAGACTTCCTTT
* * * * * ** * *
1670241 GTCAATCATCT-CATCATCGGGTTAGACTTGAGAGACGTTTT-CATCAATCGTCTACCCATCGAC
1 ATCAATCGTCTGC-CCGTCGGCTTAGACCCGAGAGAC-TTTTCCATCAATCGTCTGCCCATCGGC
1670304 TTAGA-CTCGGGAGA---CCTTT
64 TTAGACCT-GGGAGACTTCCTTT
* * * * * * * * * **
1670323 CCATCAATTGTTTACCCCTTGACTTAGACCTG-GAGACTTTTCCATCAATTGTTTGCCCATCAAC
1 --ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGC
* * *
1670387 TTAGACCCGGGAGAGTT--TTCC
64 TTAGACCTGGGAGACTTCCTT-T
* * * * ** *
1670408 ATCAATTGTCTACCCCTCGGCTTAGA-CCTAGGAGACTTTCTTTATCAATCGTCTGCCCATCGAC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTTT-TCCATCAATCGTCTGCCCATCGGC
* **
1670472 TTAGTCC-GAGGAGACTTTATTT
64 TTAGACCTG-GGAGACTTCCTTT
* * * * * * * * * ** *
1670494 ATCAATCGTTTACCCATTGGCTTTA-ACCTGGGAGACTTCTCTATCCATTATCTTCCCATCGG-T
1 ATCAATCGTCTGCCCGTCGGC-TTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCT
* *
1670557 TAGACCTAGGAGACTTCGTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * * * * *
1670578 GTCAATCGTTTGCCCGTAGACTTAGACTCGAGAGACTTTTTCATCAATCGTCTACCCATCAGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* * * *
1670643 AAATCC-AGAAGAGTT--TTT
66 AGA-CCTGGGAGACTTCCTTT
* * * * * **
1670661 CATCAATCATCTGCTCGTCGGCTTAGA-CCTAGAGACTTTTTCATCAATCGTTTG-CCATCAACT
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCT
* *
1670724 TAGAGCC-GGGAGAGTT--TTCC
65 TAGA-CCTGGGAGACTTCCTT-T
* * * * * * * ***
1670744 ATTAGTCGTCTTCCCATTGACTTAGA-CCTAGGAGACTTTCTTTGTCAATCGTCTGCCCATCGGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTTT-TCCATCAATCGTCTGCCCATCGGC
* *
1670808 TTAG-TCTCGAGAGACTTCCTTT
64 TTAGACCT-GGGAGACTTCCTTT
* * ** * * * * * ** **
1670830 GTCAAT-GATCTGTCCGTCGGCTTAGAATCGGGAGACTTCTT-TATCCATTGTTTGCCTGTTAGC
1 ATCAATCG-TCTGCCCGTCGGCTTAGACCCGAGAGACTT-TTCCATCAATCGTCTGCCCATCGGC
*
1670893 TTAGTCCTGGGAGACTTCCTTT
64 TTAGACCTGGGAGACTTCCTTT
* * * ** * ** ***
1670915 ATCAACCCTCTGCCCATCAACTTAGA-CCTAGGAGACTTTTTAATCAATCGTCTGCTTGTCGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTTTTCCATCAATCGTCTGCCCATCGGCT
*
1670979 TAGACCCGGGAGA---CCTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * * ** * *
1670997 CCATCAATTGTCTACCTGCCGGTTTAGACCCGAGAGACTTTTTTATCAATTGTCTGCCCATCAGC
1 --ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGC
* *
1671062 TTAGACCTAGAAGACTTCCTTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * ** * * * *
1671084 ATCAATCATCTGCCCGTTGGCTTAGACTCGGGAGA-TTTCATTTATTAATCATCTGCCCGTCAGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTT--TCCATCAATCGTCTGCCCATCGGC
*
1671148 TTAGA-CTCGAGAGAC-T-CTATT
64 TTAGACCT-GGGAGACTTCCT-TT
* * ** * *
1671169 ATCAATCGTATGCCCGTCGGCTTAGACCCGGGAGACTTTTCCATCAATTATCTGCCCGTTGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*
1671234 CA-ACCCT-AGAGACTT--TTT
66 -AGA-CCTGGGAGACTTCCTTT
** * * * * * ** **
1671252 -T-TTTTGTCTACCCATCAGCTTAAACCCG-GAAGACTTTTTAATCAATCGTCTGCCCATTAGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAG-AGACTTTTCCATCAATCGTCTGCCCATCGGCT
** *
1671314 TAGA-CTCAAGAGACTT--TTCC
65 TAGACCT-GGGAGACTTCCTT-T
* * * * * * **
1671334 ATTAATTGTCTGCCCGTCGACTTAGACTCGGGAGACTTTTCCATCAATCG-ATGCCCATTAGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* * * *
1671398 AGACCCGAGAGAATTTCTTT
66 AGACCTGGGAGACTTCCTTT
* ** * * * ** * * *
1671418 ATCAATTGTCTGTTCATCGG-TTCAAACCCAAGAGACTTTTTATATCAATCGTTTACCCATCAGC
1 ATCAATCGTCTGCCCGTCGGCTT-AGACCCGAGAGAC-TTTTCCATCAATCGTCTGCCCATCGGC
* *
1671482 TTAG-TCTCGGGAGACTT-TTTT
64 TTAGACCT-GGGAGACTTCCTTT
** * * * * * *
1671503 CATCAATTATCTACCCATCGGCTCAGACCTGGGAGA--TTTCCTTTATCAATCATCTGCCCATCG
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCC---ATCAATCGTCTGCCCATCG
* *
1671566 ACTTAGACCCGGGAGACTTCCTTT
62 GCTTAGACCTGGGAGACTTCCTTT
* * * * * * * **
1671590 GTCAATCATTTGCCTGTCGGCTTAGA-TC-AGTAGACTCTTCCATCAATCGTCTGCCTATTAGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAG-AGACTTTTCCATCAATCGTCTGCCCATCGGCT
* *
1671653 TAGACCCGAGAGA-TT--TTT
65 TAGACCTGGGAGACTTCCTTT
* * ** ** ** *** * * * *
1671671 CCATTAATCGTCTACCTATTAGCTTAGACTAG-GAGACTTTCTTTGTTAATCATCTGCTCGTCGG
1 --ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTT-TCCATCAATCGTCTGCCCATCGG
* * *
1671735 CTTAGACCCGAGAGACTGCCTTT
63 CTTAGACCTGGGAGACTTCCTTT
* * * * ** * * * * * * * * *
1671758 GTTAATCATCTACCTATTGGCTTAGACCCAAGAGACTTCTTTTC-TTAACCATCTACCTATCGAC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGAC-T-TTTCCATCAATCGTCTGCCCATCGGC
* *
1671822 TTAGA-CTCGAGAAACATTTCC---
64 TTAGACCT-GGGAGAC--TTCCTTT
* * * * ** * * * *
1671843 ATCAATTGTCTACCCTTCGACTTAGACTTGAGAGACTTTTCCATCAATCGTTTACCCGTCTGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* *
1671908 AGACCTGGAAGACTTCATTT
66 AGACCTGGGAGACTTCCTTT
* * * * * * * * *** * * *
1671928 GTCAATCATCTACTCGTCGGCGTAGACTCGAGAGACTTTTTCATTAAAAATTTGCTCATGGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* * *
1671993 A-AGCCCGAGAGACCTT--TTC
66 AGA-CCTGGGAGA-CTTCCTTT
* * * * *
1672012 ATCAATCGTCTGCCCGTCGGCTTAGATCTG-GAGACTTTACCATCAATCGTTTGCCCATCGACTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* *** *
1672076 AGGCCCAAGAGAGTT--TTT
66 AGACCTGGGAGACTTCCTTT
* * ** * ** *
1672094 CATCAATTGTCTGCCCCTCAACTTAGA-CCTAGGAGACTTCCTT-TGTCAATCGTTTG-CCATCG
1 -ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTT--TTCCATCAATCGTCTGCCCATCG
* * * * * *
1672156 ACTTAGTCTTGAGAAACTTCTTTT
62 GCTTAGACCTGGGAGACTTCCTTT
* * ** * * * * **
1672180 ATCAATCGTCTGCCCATTGGCTTAGAATC-AGGAGACTTCTT-CATCCATTGTCTACCCGTTAGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTT-TTCCATCAATCGTCTGCCCATCGGC
*
1672243 TTAG-TCTCGGGAGACTTCCTTT
64 TTAGACCT-GGGAGACTTCCTTT
* * * * * ** * * * *
1672265 ATCAACCCTTTGCCCATCGACTTAGAGTCGGGAGAC-TTTCTCATCAATCGTCTGCCCGTTGACT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTC-CATCAATCGTCTGCCCATCGGCT
** *
1672329 TA-AAGTCGGGAGACCTT--TCT
65 TAGACCT-GGGAGA-CTTCCTTT
* ** * * *
1672349 ATCAATCATCAACCTGTCGGCTTAGACCCAAGAGACATTTCCATCAATCGTCTGCCCATCGAG-T
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCG-GCT
* **
1672413 TAGACCTAGTTGACTTCCTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * * * *
1672434 ATCAATCATCTGCCCGTCAGCTTAAACCCGGGAGACTTCCTT-TATCAATCATCTGCCCATCAGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
** *
1672498 TTAGA-CTCGAAAGACTTCTTTT
64 TTAGACCT-GGGAGACTTCCTTT
* * ** ** **
1672520 GTCAATCGTCTGCCCATCGGCTTAGA-CTTAGGAGACAATTCCATCAATCGTCTATCCATCGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGACTTTTCCATCAATCGTCTGCCCATCGGCT
* * *
1672584 TAGACTTGGAACACTTCCTTT
65 TAGACCTGGGAGACTTCCTTT
* * * * ** * *
1672605 GTCAATCGTCTGCTCGTCGGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCTGTTGGTTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
1672670 AGACAC-GGGAGACTTCCTTT
66 AGAC-CTGGGAGACTTCCTTT
* * * * * * * ** *
1672690 ATTAATCATCTACCTGTCGGCTTAGATCCGGGAGACTTTTCTATCAATCGTCTGCCTGTTGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*
1672755 AGACCCGGGAGACTTCCTTT
66 AGACCTGGGAGACTTCCTTT
* * ** * * * * *
1672775 ATCAATTGTTTGCCCGTTAGCTTAAACCTGAGAGACTTTTCCATCAATTGTATGCCCGTCGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*
1672840 A-AACTCGGGAGACTTCCTTT
66 AGACCT-GGGAGACTTCCTTT
* * * * * * * ** *
1672860 ATCAATTGTCTGCCTGTCAGCTTAGACCTGAGAGAGTTTTCCATCAATCATCTACCTGTCAGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* *
1672925 A-AACTCGTGAGACTTCCTTT
66 AGACCT-GGGAGACTTCCTTT
* * * * * *
1672945 GTCAATCGTCTACCCATCGACTTAGACCCGAGAGACTTTTTTC-TCAATCATCTGCCCATCGGCT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGAC-TTTTCCATCAATCGTCTGCCCATCGGCT
* * *
1673009 TAGACCCGGGAGATTTTCTTT
65 TAGACCTGGGAGACTTCCTTT
** * * *** * * *
1673030 ATCAATCGTCTGCTTGTCAGCTTAGGCCC-AGGAGACTTTTTTTGTTAA---T-TACCCATCAGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGA-GAGAC-TTTTCCATCAATCGTCTGCCCATCGGC
* *
1673090 TCAGACCTGGGAGACTTCTTTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * * * ** ** *
1673112 GTCAATTGTCTGCCCATCAGTTTAGACCCGAGAGACTTTTCCTTCAATTATCTAG-CTGTCGGTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCT-GCCCATCGGCT
* * * *
1673176 TAAACCTGAGACACTTCATTT
65 TAGACCTGGGAGACTTCCTTT
* * ** * * * *
1673197 GTCAATCATCTGCCTATCGGCTCAGACCCGAGAGACTTTTCCATCAATCATCTACCCATCGACTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* **
1673262 A-AACTCGGGAGACTTTTTTTT
66 AGACCT-GGGAGAC-TTCCTTT
* * * * * * * * *
1673283 GTTAATCGTCTGCTCATCGACTTAGACCCGGGAGATTTTTCCATCAATCG-ATGCTCATCGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* **
1673347 AGACTTGAAAGACTTCCTTT
66 AGACCTGGGAGACTTCCTTT
* ** * * * * * *
1673367 GTCAATCGTCTGCCTATCGGCTCAGACCTGAGAGACTTCCTT-TATCAATTGTCTACCCATCGAC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
* * *
1673431 TTAGA-TTCGAGAGACTTCTTTT
64 TTAGACCT-GGGAGACTTCCTTT
* ** * * * * * * * *
1673453 GTCAATTATCTGCCTGCCAGCTCAGACCCGGGAGACTTCCTT-TATCAATCATCTGCCCGTCGGC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTT--TTCCATCAATCGTCTGCCCATCGGC
* * *
1673517 TTAGACCCGAGAGACTTTCTTT
64 TTAGACCTGGGAGACTTCCTTT
* * * * * * * ** *
1673539 GTCAATCGTCTACCCGTCGGCTTAGACCTGAAAGACTTTTCCATGAATTGTTTGCCTGTTGGCTT
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
* *
1673604 AGACCCGGGAGACTTTCTTT
66 AGACCTGGGAGACTTCCTTT
* * * * * * * ** * *
1673624 GTCAATCATCTGCTCGTCGGCTTATACCTGGGAGACTTTTTCATCAATCGTCTGCTTATCGACTC
1 ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
*
1673689 A-ATCCTGAGAGACTTCCTTT
66 AGA-CCTGGGAGACTTCCTTT
* * * *
1673709 ATTAATCGTCTACCCGTTAGG-TTAGACCTGAGAGACTTCTTCC
1 ATCAATCGTCTGCCCG-TCGGCTTAGACCCGAGAGACTT-TTCC
1673752 TCCATTGTTT
Statistics
Matches: 8987, Mismatches: 2791, Indels: 1081
0.70 0.22 0.08
Matches are distributed among these distances:
79 2 0.00
80 2 0.00
81 76 0.01
82 241 0.03
83 920 0.10
84 2503 0.28
85 3138 0.35
86 1882 0.21
87 180 0.02
88 17 0.00
89 25 0.00
90 1 0.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (85 bp):
ATCAATCGTCTGCCCGTCGGCTTAGACCCGAGAGACTTTTCCATCAATCGTCTGCCCATCGGCTT
AGACCTGGGAGACTTCCTTT
Found at i:1672738 original size:170 final size:169
Alignment explanation
Indices: 1653132--1673678 Score: 1786
Period size: 170 Copynumber: 121.3 Consensus size: 169
1653122 TTATTTTTCA
* * * * * * ** * *
1653132 TCTGCCTGTCAGCTTAGACTCGGGAGACTTTTTTATCAATCGTCTGCTCGTTAGCTTAGACTTGG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
** * * * * * * *
1653197 GAGACTT--TTCCATCAATTGTCTGCCCGTCGACTTAGCCTCGGGAGATTTTTCCATCAATCG-A
66 GAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCGTC
* * * * * *
1653259 TGCCCATCAGCTTAGACCTGAGAGAATTCCTTTGTTAATCG
129 TACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * *
1653300 TCGGCTCGTCTGCTCAGACCCGAGAAACTTCCTTT-ATCAATCGTTTGCTCGTCGGCTTAGATCT
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGA-CT
* ** * * *
1653364 C-AGAGACTTCCTTCGTCAATAATCTGCCTGTCAGCTTAGATCTG-GTAGACTCTTCCATCAATC
63 CGAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAG-AGACTTTTCCATCAATC
* *** **
1653427 ATCTACTTGTCGGCTTAGACCCGAAAGACTT--TTTCGTCAATCG
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTT-GTCAATCG
* * * * * ** *
1653470 TCTACCCATCGGCTTAGAACCGAGAGGCTTCTTTTGTCAATCATCTGCCCGTCGGCTCT-GACCC
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT-TTTCATCAATCATCTGCCCGTCGGCT-TAGACTC
* * * * * * * * *
1653534 AAGAAACTTTCTTTGCCAATTGTCTACCTGCCAGCTTAGACTCGAGAGACTTCTTTTC-TCAATC
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGAC-T-TTTCCATCAATC
* ** * * **
1653598 GTCTGCCCATTAGCTTAGACTCGTGAGACTT--TTCCATCAATCG
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * **** * * * *
1653641 TCTACCTGT-TGACTTAGGTTTGAGAGAC-TTTTCTATCAATCGTCTGCCCATCAGCTTAGACCC
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTC-ATCAATCATCTGCCCGTCGGCTTAGACTC
** * * * * **
1653704 GAGAGACTT-CTTCATCTAGT-ATCTACCTATCGGCTTAGACCCGAGAGACTTTGTTTATCAATC
64 GAGAGACTTCCTTTGTC-AATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTT-TCCATCAATC
* * ** * * **
1653767 GTCTAGCCGTCAACTTAGACTCGAGAGACATT--TTCATCAATCG
126 GTCTACCCATCGGCTTAGACCCGGGAGAC-TTCCTTTGTCAATCG
* * ** * * * **
1653810 TCTACCCGTC-GACTAAGACTTGAGAGATTTTCTTTATCAATCGTCTGCCTATCGGCTTAGACTC
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTT-TTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * *
1653874 TG-GAGACTTCCTTTGTCAATCGTCTGCCCGTCAGCGTAGACCTAGGAAACTTTTCCATCAATCA
64 -GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGACTTTTCCATCAATCG
* * * * * *
1653938 TTTGCCCATCGGCTCAGACTCAGGAGACTTCCTTTGTCAATCC
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * ** * * * *
1653981 TCTACCTGTTGGCTTAGACCCGAGAGAGTTTTCCATCAAT-AGTCTACCCATCGGCTTAGACTC-
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCA-TCTGCCCGTCGGCTTAGACTCG
* * ** * *
1654044 AGGAGACTTCCTTTGTCGATCGTCTGCCCGTCAACTTAGACCTGAGAGGCTTCCTT-TATCAATC
65 A-GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTT--TTCCATCAATC
** * ** * *
1654108 ACCTACCAATCGGCTTAGACCTAGGAGACTTCCTTTATCAATCA
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* ** * * * *
1654152 TCTGCCCCTC-GACTTAGACCCTG-GAGACTTTTTTTGTCAATCGTCTACTCATCGGCTTAGAC-
1 TCTGCCCGTCAG-CTTAGACCC-GAGAGAC-TTTTTCATCAATCATCTGCCCGTCGGCTTAGACT
* ** * * * * * * *
1654214 CTAGGAGACTT--TTCCATCAATTGTCT-ACTCGTTGACTTAGACTCGGGAGACTTTTTCATCCA
63 CGA-GAGACTTCCTT-TGTCAATCGTCTGCCT-GTCGGCTTAGAC-CGAGAGACTTTTCCATCAA
* * ** * * *
1654276 TTGCCTACCTGTTGGCTTAGACCCTGGAGACTT--TTTCATCAATCG
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTT-GTCAATCG
* * * * * * * * * *
1654321 CCTGCCTGTCAGCTTAGA-CCTAGGAAACTTCCTTT-GTCAATCGTCTACTCGTCAGCTCAGAC-
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACT
* * * * * * * * * * ***
1654383 CTAAAAGACTTCTTTTATCAATCATATGCCCGTCGGTTTAGATCTAGAAGACTTTCTTTGTCAAT
63 C-GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGAG-AGACTTT-TCCATCAAT
* * * * ** * ** *
1654448 CGTTTGCTCATCGGCGTAGACCTAGGAAACTT--TTCCATCAATCA
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * *** * * *
1654492 TCTGCCCGTCGGCTAAGACCCGAGAGACTTTTTCATTTCTCATCTACCCGTCAGCTTAGACTCGG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
** * * ** *
1654557 GAGACTT--TTTCAACAATCGTCTACTTGTTAGCTTAGACTTGAGAGACATTTT-CATCAATCGT
66 GAGACTTCCTTT-GTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGAC-TTTTCCATCAATCGT
* * * * * *
1654619 CTGCCAATCGGCTAAGACCCGAGAGACTTTCTTTATCAATCG
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * ** * * *
1654661 TCT-ACCGATCGGCTTAGA-CCTAGGAGACTTCCTTT-GTTAATCGTCTGCTTGCCAGTTTAGA-
1 TCTGCCCG-TCAGCTTAGACCCGA-GAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGAC
** * ** ** * *
1654722 TCCGAGAGACTT--TTCCATCAATCGTTTGCCCATCGATTTAGACCCAAGAGATTTCTTTTGC--
62 T-CGAGAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGA---CTTTTCCAT
* * * * * * * *
1654783 CAATCATCTACCCGTCAGCTCAGACCCGAGTGACTTCTTTTATCAATCG
121 CAATCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * ** * *
1654832 TCTACCTGTC-GACTTAGA-CCTAGGAGA-TTTCCTTTGTCAATCATCTCCCCGTCGGCTCAGAC
1 TCTGCCCGTCAG-CTTAGACCCGA-GAGACTTT--TTCATCAATCATCTGCCCGTCGGCTTAGAC
* * * * ** * * *
1654894 -CTGAGAAACTTCCTTTGCCAATCATTTTTCTGTCGGCATAGATCCTGA-AAACTACTTTTC-TC
62 TC-GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CC-GAGAGACT--TTTCCATC
* * * * * * **
1654956 AATCATCTGCCCGTCAGCTTAAACTCAAGAGACTTCCTTTGTCAATCG
122 AATCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * *
1655004 TTTGCCCGAC-GATGTAGACCTGGGAAACTTTTCCATCAATCATCTGCCCGTCAGCTTAGACTCG
1 TCTGCCCGTCAGCT-TAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* ** * * * * *
1655068 AGAGACTTCTTTTGTCAATTATCTTCTTGTTGGCTTAGACCTGAGAGAGTTTTCCATCAATAGTC
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTTTTCCATCAATCGTC
* * **
1655133 TACCTATCGGCTTAGACTCAAGAGACTTCCTTTGTCAATCG
129 TACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * ** * ** * * * *
1655174 TCTGCCCTTCGGCTTAGACCTAAGAGGCTTTCTTTGTCAATCACCTACCCGTCGGCTTAGATTTG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTT-TTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * ** * * * *
1655239 GGAGACTTCCTTTATCAATCGTCTGCCCCTCAGCTTAGACCCGGGAGACTTCTTTTC-TCAATCA
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGAC-T-TTTCCATCAATCG
* * ** ** *
1655303 TCAACCCATTGGCTTAGACTTGGGAGACTT--TTCCATCAATTG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * ** * * ** * * *
1655345 TCTACCCGT-TGACTTAGACTTGGGAGACTTTTTCATCCATCGCCTACCTGTCGGCTTAGACCCG
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * *** * * **
1655409 GGAGACTT--TTTCATCAATCG-CTTGCCCGTCAAATTAGACCTGGGAAACTTCCTT-TGTCAAT
65 AGAGACTTCCTTT-GTCAATCGTC-TGCCTGTCGGCTTAGACC-GAGAGACTT--TTCCATCAAT
* * * * * * *
1655470 CATCTACCCATCAGTTTAGACCAC-GAAGA-TTTCTTTCATCAATCA
125 CGTCTACCCATCGGCTTAGACC-CGGGAGACTTCCTTT-GTCAATCG
* * * * * * * * *
1655515 TGTGCTCGTCGGCTTAGA-TCTAGAAGACTTCCTTT-GTCAATCATTTGCTCGTTGG-TGTAGAC
1 TCTGCCCGTCAGCTTAGACCCGAG-AGACTT--TTTCATCAATCATCTGCCCGTCGGCT-TAGAC
* * * ** * * *
1655577 TTGGGAAACTT--TTCCATCAATCATCTGCCTATTGGCTCAGACTCGAGAGACCCCCGAGAGACT
62 TCGAGAGACTTCCTT-TGTCAATCGTCTGCC---T-G-TC-GGCT---TAGA---CCGAGAGACT
* *** ** * * **
1655640 TTTTCATCAATCGTCTACTTGTTAGCTT-GACTCGAGAGACATT--TTCATCAATCG
114 TTTCCATCAATCGTCTACCCATCGGCTTAGACCCGGGAGAC-TTCCTTTGTCAATCG
* * * * * *
1655694 TCTGCCCGTC-GGTTAAGACCCGAGAGACTTTCTTTATCAATTATCTGCCCATCGACTAAGAC-C
1 TCTGCCCGTCAGCTT-AGACCCGAGAGACTTT-TTCATCAATCATCTGCCCGTCGGCTTAGACTC
* ** * * * * ** * * *
1655757 AAGGAGACTTCCTCAGTTAATCATCTGCCTATTGATTTAGATCCGAAAGACTTTTTCATCAATCA
64 GA-GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCG
* * ** * *
1655822 TCTGCCTATCGATTTAGACCTC-GGAGACTTCCTTTGCCAATCA
127 TCTACCCATCGGCTTAGACC-CGGGAGACTTCCTTTGTCAATCG
* ** ** * * ** * *
1655865 TCTACCCGTCAGCTCGGACCCGAGTA-A-TTTCCTTTGTTAATCATCTACTTGTCGACCTAGACT
1 TCTGCCCGTCAGCTTAGACCCGAG-AGACTTT--TTCATCAATCATCTGCCCGTCGGCTTAGACT
* * * ** * * * * *
1655928 TGGGAGGCTTCCTTTGTCAATTATCTGCCCGTAGGCTCAGACCTGAGAGACTTTTTCATCAATTG
63 CGAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTTTTCCATCAATCG
* ** * * * *
1655993 TCTACCTATCAACTTAGGCTCGGGAGA-TT--TTTATCAATCA
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
** * ** **
1656033 TCTGCCCGTGGGCTTAGACCCGAGAGACTTTTTCATCCCTTATC-TACTGTTTACCTATCAACTT
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCAT--C-AATCAT-CTG----CCCGTCGGCTT
* * ** ** * **
1656097 AGACTC-AAAGACTT-GTTCATCAATCGTCTGCCCATCGGCTTAGACCCAGGAGACTTTCTTTAT
58 AGACTCGAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGACTTT-TCCAT
* * * * ** * *
1656160 CAATCGTCTGCCCGTTGGCTTAGTCCCAAGAGACTTCCTTTATCAATCA
121 CAATCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * ** ** * *
1656209 TC-GACCCATCAGCTTAGACTCGGGAGACTTCTTT-ATCCATTATCTACCTATTAGCTTAGTCTT
1 TCTG-CCCGTCAGCTTAGACCCGAGAGACTT-TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * * * ** ** * * * *
1656272 GGGAGGCATCTTTTATCAAGCCTCTGCCCATTAGCTTAAATCCGAGAGACTTTTTCGTCAATCAT
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCGT
* * ** ** * * *
1656337 CTGCCCGTC-GCCAAGACATGGAAGACATTTCC---ATCAATTG
128 CTACCCATCGGCTTAGACCCGGGAGAC--TTCCTTTGTCAATCG
** * * * * * * * * *
1656377 TCTGCCTATCAGCTTAAAGCTGGGAGACTTTTCCAT-ATTTTC-TCTGCCCGTTGGCCTAGACCC
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCA--ATCATCTGCCCGTCGGCTTAGACTC
* * * * * * *
1656440 GAGAGATTTCCTTTATCATTCGCCTGCCCGTCAGCTTAGACCCAGGAGACATCCTTT--ATCAAT
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGAC-T--TTTCCATCAAT
* * * ** * * * **
1656503 CATTTTCCTGTTGACTTAGACCCGAGAGACTTTTTTTGTCAATCG
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * * *
1656548 TCTGCCCATCGGCTTAGA-CCTAGGAGACTTTTCCAACAATCATCTACCCATTGACTTAGACTCG
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
** * * * * *
1656612 AGAGACTT--TTCCATCAATCGCCTACCCGTCGGCTTAGACC-ATGGGA-TATTTCCTTCAATCG
65 AGAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGACT-TTTCCATCAATCG
* * ** *** * * *
1656673 TTTGCCTGTCGGCTTAGATTAGGGAAACTTCCTTTATCAATCA
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * ** * * * * * *
1656716 TCTACCCATGGGCTTAGACTCGAGAAACTTCCTTTGC--CAATCGTATG-CCGTCAGCTTAGATT
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT--TTT-CATCAATCATCTGCCCGTCGGCTTAGACT
* * * * * *
1656778 CAATAGACACTTCC---ATCAATCATCTACCTGTCGACTTAGACCCGAGAGACTTTTCCATCAAT
63 C--GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAAT
* * * *** * * *
1656840 CGTTTACCCTTCGGTTTAGACCTAAGAGGCTTTCTTTGTCAATCA
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * ** ** ** * * * *
1656885 TTTGCCCATC-GACTTAAACTTGAGAGACTTTTTTTGTCAATTGTTTGCCTGTCGACTTAGACCC
1 TCTGCCCGTCAG-CTTAGACCCGAGAGAC-TTTTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * * * *
1656949 GGGAGGCTTCTTTTCTCAATCGTCTACCCGTCGGCTAAGACCAAAGAGACTTTTCCATCAATCGT
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTTTTCCATCAATCGT
* * * * *
1657014 CTACCTATCGACTTAGGCTCGAGG-GACTTTTCC-AT-T-AATCG
128 CTACCCATCGGCTTAGACCCG-GGAGAC--TTCCTTTGTCAATCG
* * ** * * * * *
1657055 TTTGCCCATTGGCTTAGACCCGAGAGACTTCTTCATTC-ATTATTTGCCTGTCGGCTTAAAC-CT
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCA-TCAATCATCTGCCCGTCGGCTTAGACTC-
** * * * * * * *
1657118 GAGAGACTTTGTTTGTCAATCATCTACCCGTCGGCTTAGATTCGAGAGATTTTTTCATCAATCAT
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCGT
* * * *
1657183 CTACCCATTGGCTTAGATCCGGGAGA---CCTTTCCATCAATTG
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTTT--GTCAATCG
* * ** * * *
1657224 TCTACCCGTCAGCTTAGACACG-GAGAC-TTTTCTATCAATTGTCTACCCATCAGCTTAGAC-CT
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTC-ATCAATCATCTGCCCGTCGGCTTAGACTC-
* * * ** * ** * * * **
1657286 GAAAAAGTT--TTCCATCAATCATCTGCCCCTCAGCTTAGACCTAAAAGACTTCCTT-TGTCAAT
64 GAGAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTT--TTCCATCAAT
* * ** * * * *
1657348 CGTTTGCCTGTCGACTTAGTCCTGGGAGACTTCCTTTATCAATCG
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * ** * ** *
1657393 T-TGGCCCAT-TGACTTAGACTCGGGAGACTTCTTCATCCATTGTCTGCCCATTAGCTTAGTC-C
1 TCT-GCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * * * * * * * *
1657455 TGGGAGACTTTCTTTATCAACCCTTTGCCTATTGGCTTAGACTAGGGAGACTTTTTCATCAATCA
64 -GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCG
* * * *
1657520 TCTGCCCATCGGCTTA-AACCGGGAAGA--T-CTTTCCATCAATTG
127 TCTACCCATCGGCTTAGACCCGGG-AGACTTCCTTT--GTCAATCG
* ** *** * ** * *
1657562 TCTACTTGTCAGCTTAGA-GTTAGGAGACTTTTCCATCAATCATCCACCCATCGGCTTAGAC-CC
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * * * * ** *
1657625 AGGACACTTTCTTTATTAATCGCCTACCTGTCGACTTAGACTC-AGGAGACTTCTTTTATCGATC
65 A-GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGA-GAGACTT-TTCCATCAATC
** * * * *
1657689 ACCTGCCCATCGGCTTAGACTCGAGTGACTTCCTTTGTCAATCG
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * ** * * * * * * * * **
1657733 TTTACTTGTCGGCTTAGA-TCTAGGAGACTTTTCCATCAATCGTTTGCCCATTGATTTAGAC-CT
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTC-
* * * * * * * *
1657796 GAGAGACTTCCTTTGTCAGTCATCTGCTTGTCGGCTCAGGCCCAAGAGACTTCCTT-TACCAATC
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTA-GACCGAGAGACTT--TTCCATCAATC
* * *** ** * ** * *
1657860 GTTTGCTTGTCAACTTAGATCTAGGAGACTTCTTTTCTCAATCG
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* ** ** * * * * * *
1657904 TCTACCTATTGGCTTAGACCCTG-GAGACTTCCTTT-GTCAATCATCTACTCGTCGGCTCAAACC
1 TCTGCCCGTCAGCTTAGACCC-GAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACT
* * * * * ***
1657967 CGAGAGACTTTCTTTGCCAATCGTCTACCTATGGGCTTAGAACC-AGGAGACTTCTTTTTTCAA-
63 CGAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAG-ACCGA-GAGACTT-TTCCATCAAT
* * * * ** *
1658030 CTGCCTGCCCATCAGTTTAGACTTGGGAGACATTTCC---ATCAATCG
125 C-GTCTACCCATCGGCTTAGACCCGGGAGAC--TTCCTTTGTCAATCG
* ** * * * * * * * *
1658075 TCTACCTATC-GACTTTGGCTCGAGAGA--TTTT-GTCAATCATCTACCTGTCAGTTTAGACTCG
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * *** * * * *
1658136 AGAGACTT-CTTTATCCATTACCTACCTGTTGGCTTAGACCCAAGAGACGTCATTT--GTCAATC
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGAC-T--TTTCCATCAATC
** * ** **
1658198 GTCTACCTGTCGGTTTAGACTTGGGAGACTT--TTTCAACAATCG
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTT-GTCAATCG
* ** * * * * * * *
1658241 TTTGCCTATCAGCTTATACCC-AGGAGACCTTTCCATCAATCATTTGCCCATCGGGTTAGACCCG
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * * * *
1658305 GGAGACTTTCTTTATCAATCGTCTGCCTGTCGGGTT--A---A-A-CCTTTTTCATCAATCGTTT
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGAGAGACTTTTCCATCAATCGTCT
* * * * ** ** *
1658363 TCTCATTGGCCTAGACCTAGGAGACCTT--TTCATTAATCG
130 ACCCATCGGCTTAGACCCGGGAGA-CTTCCTTTGTCAATCG
* ** * *
1658402 TCTGCCCATTGGCTTAGACCCGAGAGACTTCCTTT-ATTAATCATCTGCCCTTCGGCTTAGAC-C
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
** * * * *
1658465 TGAGAGACTT--TTCCATCAGTTGTCTGCCTGTTGGCTTAGACCTAGGAGA--TTTCCTTTATCA
64 -GAGAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGACTTTTCC---ATCA
** ** * * ** *
1658526 ATCGTCTACCTGTCAACTTAGACCCGAGAGAGTT--TTCCATCAATAG
123 ATCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * ** * * * * * * *
1658572 TCTACCCATTGGCTTAGACTC-AGGAGACTTCCTTT-GTTAATCATCT-ACCGATAGACTCAGAA
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTT--TTTCATCAATCATCTGCCCG-TCGGCTTAG-A
* * * * * ** * *
1658634 CT-AAGAGACTTTCTTTGTTAATCATCTGCCTATCAACTTAGACCCGGGAGACTTTTCC-CCTAA
61 CTCGAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATC-AA
** * * *** ** *
1658697 TCGTCTACCTGTCGACTTAGGCTTAGGAGACTT--TTCCATCAATCA
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* ** * * * * * * * *
1658742 TCTGCCCGTCGGCTTAGACCTAAAAGACTTCTTT-ATCCATTATTTGTCTGCCAGCTTAGACTCG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT-TTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * ** * * *
1658806 -GAAGACTTCCTTTGTCAATCATCTACAC-GTTAGCTTAGACTCGGGAGACTTTTTCATTAATCG
65 AG-AGACTTCCTTTGTCAATCGTCTGC-CTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCG
* * * * *** *
1658869 TTTATCCGTCGGTTTAGACCTATGAGA---CCTTTCCATCAATCG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTT--GTCAATCG
* * * * * * * * * *
1658911 TCTACCCGTCAACTTAGACTCG-GAGACTTGTCCATCAATCGTCTGCCCATCAGCTTAGGC-CTA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
* * * * * *
1658974 GAAGACTTCCTTTGTTAATCGTCTGCCCGTTGGCTTAGTCCCGAGAGACTTCCTT-TATCAATCA
66 G-AGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAG-ACCGAGAGACTT--TTCCATCAATCG
* * ** * *
1659038 TC-AGCCCAT----TT-G-CTC---AAACTT-CTTCATCCATTG
127 TCTA-CCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * ** * * * * * * *
1659071 TCTACTCGTTAGCTTAGTCTTGGGAGGCTTCGTTT-ATCAACCCTTTGCCCATCGGCTTTGAC-C
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * ** * * * *
1659134 TGAAAGACTT--TTTCATCAATCATCTGCCCATCGGCTTAGACTCGGGAGACCTTTCCATGAATT
64 -GAGAGACTTCCTTT-GTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATC
* ** * * * ** ** *
1659197 GTCTGCCTGTCGACTTAGAGCCGGGAGTCTT--TTCCATCTTTTG
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * *
1659240 TCTGCCCGTCAGCTTAGA-CCTAGGAGACTTCCTTT-ATTAATCATTTACCCATCGGCTTAGACT
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACT
* * * * ** * * **
1659303 CGGGAGACTTCTTTTGTCAATCGTCTGCCCGTCGGCTTTGACTTAGGAGCCTTTTCCATCATTTA
63 CGAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGACTTTTCCATCAATCG
* * *** ** *
1659368 TCTACCCATTGACTTAGA-CTAAGAGACTT--TTCCATCAATTG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * * * ** * * * *
1659409 CCTGCCCATC-GACTTAGACCCGGGAGACTTTTCCTTTAATTGTTTGCCCGCCAGCTTAGACCCG
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * ** ** * * *
1659473 AGAAACTTCTTTTGTCAATCGTCTACCCATCAACTCAGACCCGGGAGACTTCATTTGC--CAATC
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGAC-T--TTTCCATCAATC
* * * ** * * * ** *
1659536 GTCTTCCCGTCAGCTTAGATTCAGTATAC-T-CTTCCATCAATCA
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * * *
1659579 TCTGCCTGTCGGCTTATACCCGAGAGACTTCTTTTC-TCAATCGTCTGCCCGTTGGCTTAGACTT
1 TCTGCCCGTCAGCTTAGACCCGAGAGAC-T-TTTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* ** * * * * *
1659643 GGGAGACTT--TTCCATCAATCGTCTACCTATCGACTTAGGCTTGAGAGACTTTTCCATCAATCG
64 GAGAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCG
* * * * * ** * **
1659706 TTTGCCCATCGGCTTAGACTCGAGAAACTT-CTTCATCCATTA
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* ** * * * * ** * *
1659748 TCTACCCACCAACTTAGACTC-AGGAGACTATGTTT-GTCAATCGTCTATCCGTCAGCTTCGACT
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACT-T-TTTCATCAATCATCTGCCCGTCGGCTTAGACT
* * ** * * * * * * *
1659811 CTAGAGACTT--TTTCATCAATTATCTACATTTCGACTTAGACCCGAGAAACCTTTCCATCAATT
63 CGAGAGACTTCCTTT-GTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATC
* * ** * * *
1659874 GTTTACCCGTTAGCTTAGACTC-GGAGACTTTTCC-AT-T-AATTG
126 GTCTACCCATCGGCTTAGACCCGGGAGAC--TTCCTTTGTCAATCG
* * * * * * * * * * * * *
1659916 TCTACCCATCGGCTTAGACCTGAAAGAGTTTTCCATCAACCATCTACCCCTCGGCCTAAAC-CTA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTC-G
** * * * * **
1659980 AGAGACTTCCTTTGTCAATCGTCCACTTGTCGGCGTAGTCCCAGAGAC--TTCC-TTTATCCGTC
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGAGAGACTTTTCCATCAAT-CGTC
** * ** * ** * **
1660042 ATCAGCCTGTCTGCTTAGATTCGAGAGACTT-CTTCATCCATTA
129 -T-A-CCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * ** * * * *
1660085 TATGCCCGTTAGCTTA-ATCTTGAAAGACTTCCTTT-ATCAACCCTCTGCCCATCGGCTTAGACT
1 TCTGCCCGTCAGCTTAGA-CCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACT
* * * * * * *
1660148 CGAAAGACTT--TTTCATCAATCATCTGCCTATCGACTTAGACCTGGGAGACCTTTCCATCAATC
63 CGAGAGACTTCCTTT-GTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTTTTCCATCAATC
* *** **** * ** *
1660211 GTCTGCTTGTCGGCTTAGTGTTGGAAGACTT--TTCCATCAATTG
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * * * * *
1660254 TCTACCCGTCGGTTTAGA-CCTAGGAGACTTCCTTT-ATTAAT-AGCCTACCCATCGGCTTAGAC
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTT--TTTCATCAATCA-TCTGCCCGTCGGCTTAGAC
* * * ** * * ** **
1660316 -CCAGGAGACTTCCTTTATCAATCGTCTGCCCGTCGAATTAGAGCTAGGAGACTTTTTTTATTTA
62 TCGA-GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGAC-TTTTCCATCAA
* * * ** * *
1660380 TCGTCTGCCCGTCAGCTTAGACCTAGGAAACTTTTCC-ATG--AATCG
124 TCGTCTACCCATCGGCTTAGACCCGGGAGAC--TTCCTTTGTCAATCG
* * * * * ** * * * *
1660425 TCTACCTGT-TGACTTAGACTCGAGAGACTTTTCCATCAATCGCCTGCCCGTCGACTCAGACCCA
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * * * ** *
1660489 AAAGACTCTTCTTT-T-AAACGTCTGCCCGTCAAG-TTAGACCCGAGAAACTTCCTT-TGTCAGT
65 AGAGACT-TCCTTTGTCAATCGTCTGCCTGTC-GGCTTAGA-CCGAGAGACTT--TTCCATCAAT
* * * * * * ** * * * *
1660550 CATCTTCCTATCAGCTCAAACCCAAGAAACTTCTTTTATCAATCA
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
*** * ** * * *
1660595 TCTGCCCGTCAGCTTAGACTTAAAAGACTTTCTTTGTCAATCATTTGCTCGTCAGCTTAGACAT-
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTT-TTCATCAATCATCTGCCCGTCGGCTTAGAC-TC
* * ** * * * * ** ***
1660659 GGGAAACTT--TTCCATCAATCGTCTGCCCGTCAGCTCAGACCTGGGAGACTTTTTTATTTTTCG
64 GAGAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTTTTCCATCAATCG
* * *
1660722 TCTACCCATCGGCTTAGACCCGAGAGACTT--TTTCCTCAATCA
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTT-GTCAATCG
* * * * * ** * * *
1660764 CCTGCCCGT-TGCTTAGACTCGTGAGACTTTTCCATCAATTGTCTGTCCGTCAGCTTAGACTCGT
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
* * ** * * ** * *
1660828 GAGA-TT--TTTCCATCAATCG-ATGCCCATCGGCTTAGACTCGAGAAAATTCCCCTTTCGATCG
66 GAGACTTCCTTT--GTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCC-ATCAATCG
* * * ** * * *
1660889 TCTACTCATTGGCTCA-ATCTTGGGAGACTTCCTTTATCAGTTG
127 TCTACCCATCGGCTTAGA-CCCGGGAGACTTCCTTTGTCAATCG
* * * * * * ** * * *
1660932 TTTACCCATC-GACTTAGTCTCGGGAGACTTCTTTTGTTAATTATCTGCCCGTCGGCTCAGAC-C
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTT-TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * ** ** * ** *
1660995 CAGGAGACTTCCTCTGTCAATCGTCTGCCCATCAACTTAGACCCGGGAGACTTCCTT-TGTTAAT
64 GA-GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTT--TTCCATCAAT
* * * * ** ** ** ** *
1661059 CATTTGCCTATTAGCTTAGATTCGACAGAC-T-CTTCCATCAATTG
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* ** * * * * * ** *
1661103 TCTACCTATC-GACTTAGACTCGGGAGACTTTTCCAT-AAGTTATCTACCTATTGGCTTAGAC-C
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAA-TCATCTGCCCGTCGGCTTAGACTC
* * * * * *
1661165 TGGGAGAC-TCTCTTTGTCAATCTTCTG-CTCATCGGCTCAGACCCGAAAGA--TTTCCTTTGTC
64 -GAGAGACTTC-CTTTGTCAATCGTCTGCCT-GTCGGCTTAGA-CCGAGAGACTTTTCC---ATC
* ** * ** ** * * *
1661226 AATCATCTACCTGTTGGCTTAGACCCAAGAGACTTTATGTCTCAATCA
122 AATCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * ** * * *
1661274 TCTACGCGTCAGCTTAAACCCGATAAACTTTTCCATCAATTAT-TTACCTTCGACTTAGACTCGG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
** * * ** * * * * **
1661338 GAGA-TT--TTCCATCAATCATTTGCCCATCAGCTTAGACCCGTGAGACTTCTCCATCCATTATC
66 GAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCGTC
* * *
1661400 TGCCCATCGGCTTAGACCTGGGAGACTTCATTTGTCAATCG
129 TACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * *
1661441 TCT-CTCCATCAGCTTAGACTCGAGAGACTTTTTCATCAATCGTCTACCCGTCGTCTTAGACCCG
1 TCTGC-CCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
** * * * *
1661505 AGAGACCTT--TTCATCAATTCGTTTGCCCT-TCGGCTTAGACCTAGACACTTTTCCATCAATCA
65 AGAGA-CTTCCTTTGTCAA-TCGTCTG-CCTGTCGGCTTAGACCGAGAGACTTTTCCATCAATCG
* * * * ** * **
1661567 TTTGCCCATTGACTTAGA-CCGATAGAGTT--TTCCATCAATCG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * ** * * *
1661608 TCTTCCTC-TCAGCTTAGA-CCTAGGAGACTTCTTTTGTCAATCATCTACCCATCGGCTTAGTC-
1 TCTGCC-CGTCAGCTTAGACCCGA-GAGACTT-TTTCATCAATCATCTGCCCGTCGGCTTAGACT
** * * * ** *
1661670 CGAAGAGACTTGATATATCAATCGTCTACCCATCGGCTTAG-CCTTG-GAGACTTTTCCATCCAT
63 CG-AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACC--GAGAGACTTTTCCATCAAT
*** * ** *** ** *
1661733 TACCTGCCTGTCGGCTTAGACCTAAGAGACTTTGTTTATCAATCG
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * ** * *
1661778 TCTGCTCGTC-GACTTAGACTCGAGAGACTTTTTCATCAATCATCTGCCTATCGACTTAGAC-CC
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
** * * * * *
1661841 AGGAGACCTT--TTCATCAATCGTTTGCCCGTCGGCTTAGACCTAGAGACTTTTCCATTAATTGT
65 A-GAGA-CTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGAGAGACTTTTCCATCAATCGT
* * * ** * * * ** *
1661904 TTGCTCATCAACTTAGACTCGAGAGAGTT--TTCCATCAATCA
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * ** * * * * * *
1661945 TTTTCCCTTTGGCCTAGA-CCTAGGAGACTTCCTTT-GTCAATCGTCTGCCCATCGGCTTAGTC-
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACT
* * * * * * * *
1662007 CTGAGAGACATCCTTTATCAATCATCATCTGCCCGTCAGCTTATAATCGGGAGACTTCTT-CA-C
63 C-GAGAGACTTCCTTTGTC-A--ATCGTCTGCCTGTCGGCTTA-GACCGAGAGACTT-TTCCATC
* * * * ** ** * ** * * * *
1662070 CATTGTTTGCCTGTTAGCTTAGTCTTGGGTGACTTCCTTTATCAACCC
122 AATCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * ** * * * * * *
1662118 TCTACCCATCGGCTTAGACTTGGGAGACTTTTTCATCAATCGTTTGCTCATCAGCTTAGAC-CTG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTC-G
* * * * *
1662182 AGAGA---CCTTTCCATCAATCGTCTACCT-ACTGGCTTAGACCTAATAGACTTTTCCATCAATC
65 AGAGACTTCCTTT--GTCAATCGTCTGCCTGTC-GGCTTAGACC-GAGAGACTTTTCCATCAATC
* * * * *
1662243 GTCTACCCATCGGCTTAGACCCAGAAGACTTCTTTTATCAATCA
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * * ** * *
1662287 TCTACCCATTAGCTTAGACTCGGGAGACTTTGTTTATTAATCATTTGCCTATCGGCTTAGACCCA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTT-TTCATCAATCATCTGCCCGTCGGCTTAGACTCG
** * * * ** *
1662352 AGAGACTTTTTTTGTCAATTGTTTGCCCGTCAACTTAGACTCGAGAGACTTTTCCATCAATCATC
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCGTC
* * * * * * * * *** *
1662417 TGCTCGTTGGCTTATACCCAGAAGACTT-CTTTATTTTTTG
129 TACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * ** * ** *
1662457 TCTACCCGTCGGCTTAGAGCCGAAAGACTTTTTCATTAATTGTCTGCTCGTTAGCTTAGA-TTGA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
* * * * * * * *
1662521 GGAGACTT--TTTCATTAATTGTCTACTTGTCGACTTAGACTCGGGAGACTTTTCCATCAATCGA
66 -GAGACTTCCTTT-GTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCGT
* * * * * *
1662584 CGT--CCATCAGCTTAGACCCGAGAGAATTCCTTTATTAATCT
128 C-TACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* ** * * * * * * * * * * * *
1662625 TTTGTTCGTCAGTTTAAACCTGGGAGAC--TTT-GTCAATCGTTTACCTGTCGACTTAGTCTCGG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
** ** * * * * * *
1662687 GAGACTTTTTTTGTCAATTATCTATCC-ATCAGCTTAAACCTGAGAGACTTCCTT-TATCAATCT
66 GAGACTTCCTTTGTCAATCGTCT-GCCTGTCGGCTTAGACC-GAGAGACTT--TTCCATCAATCG
* * **
1662750 TTTACCTATCAACTTAGACCCGGGAGACTTCCTTTGTCAATCG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * * *** **
1662793 TTTGCCTGT-AGGCTTAGATCC-AGTAGACTCTTCCATCAATCGTATACTTATCAACTTAGAC-C
1 TCTGCCCGTCA-GCTTAGACCCGAG-AGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * ** * *** *
1662855 TAAGAGA-TT--TTTCCATCAATCATCTACCAATCGGCTTAGACCCGAGAAACTTCTTTTGTTAA
64 -GAGAGACTTCCTTT--GTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTT-TTCCATCAA
* * * ** * * ** * *
1662917 TCATCTGCTCATCAACTCAAACCCAAGAGACTT-CTTCTATCAATCA
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* ** * * * * * * ** *
1662963 TCTACCTATCGGCTTAGACCCAAGAGATTTCTTTTC-TTAACCGTCTGCCTATCGACTTAGAC-C
1 TCTGCCCGTCAGCTTAGACCCGAGAGA-CT-TTTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* ** * * * * *
1663026 TGAGAAACTT--TTCCATCAATTGTCTACCTTTCGACTTAGACTCGAGAGACTTTTCCATTAATC
64 -GAGAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATC
* * * * *** * **
1663089 GTCTACGCGTTGGCTTAGACCTGGGAGACTT-CTCCATCCATTA
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* ** * ** * * * *
1663132 TCTGCCCGTCGGCTTAGACTTGGGAGACTTTGTTTGTCAATCATCTACCCATTGGCTTAGAACTG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTT-TTCATCAATCATCTGCCCGTCGGCTTAG-ACTC
* * * * *
1663197 GA-AGACTTTCTTTGTCAATCGTCTGCTTATCGGCTTAGACTCGAGAGAGTTTTCCATCAATAGT
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCGT
*** * * * **
1663261 CTACCCATCGGCTTAGACTTAGGACA-TTTCTTTCATCAATTA
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTTT-GTCAATCG
* ** * * * * * * * * *
1663303 TTTGCCTATCTGCTCAGACCCAAGAGACTTCCTTT-GTTAATCATCTACCTGTTGGCTTAGACTT
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * ** * *
1663367 GGGAGACTTCTTTTCTCAATCGTTTGCCCATCTGCTTAAACC-AGAAGACTTTTCCATCAATCGT
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGAG-AGACTTTTCCATCAATCGT
* * * * ** **
1663431 CTACCTATCGACTTAGGCTCAAGAGACTT--TTCCATCAATCG
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
** * * * * * * *
1663472 TCTGCCTATCGGCTTAGACCCGGGAGACTTTTTCATCCATTATCTGTCCGTCAGCTTAGACTTG-
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
* * * * **
1663536 GAAAACTTCATTTGTCAATCGTCTGCCCGTCGGCATAGACTTAAGAGAC-TTT-CATTGTCAATC
66 G-AGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCA---TCAATC
* * * * * * * * * *
1663599 GTTTGCTCATTGGCTTAGTCCCAGGAGACTTCCTCTATCGATCA
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
** * * * * ** ** * *
1663643 TCAACTCGTCAGCTTAGACTCGAGAGACTTCTTCATCCATTGTCTGCCCGTTAGCTTAGTCTTGA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
* * * * ** * *
1663708 GAGGCTTCCTTTATCAACCCTCTGCCCATCGGCTTAGACCCGAGAGACTTTTTCATCAATCATCT
66 GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCGTCT
* * * * * *
1663773 GCCCGTCGACTCAGACCCGGGAGACCTT--TCTATCAATCG
130 ACCCATCGGCTTAGACCCGGGAGA-CTTCCTTTGTCAATCG
* ** ** * ** ** * ** *
1663812 TCTACCTATC-GACTTAGAGTCGAGAGACTTTTCCATCTTTTGTCTGCCCATCAACTTAGACCCG
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * ** * * * *
1663876 AAAGACTTCCTTTATCATTC-ACTTGCCCATTGGCTTAGACCTAAGAGACTTCCTT-TATTAATC
65 AGAGACTTCCTTTGTCAATCGTC-TGCCTGTCGGCTTAGACC-GAGAGACTT--TTCCATCAATC
* * ** * *
1663939 GTTTGCTTATCGACTTAGACCCGGGAGACTT-CTTCTGTCAATCA
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * * * * * *
1663983 TCTGCCCGTCGGCTTAGA-CCTAGGACACTTTTCCATCAATCGTCTACCCGTTGACTAAGACTCG
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * ** *
1664047 AGAGACTT--TTTCATCAATCGCCTACCCATCGGCTTAGATCCGAGAGACTTTTCCTTCAATCGT
65 AGAGACTTCCTTT-GTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCGT
* * * * * *
1664110 CTACCTATCGGATTAGACCTGAGAAACTTCCTTTGTCAATCA
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * *
1664152 TCTACCCATTAGCTTGGACCC-AGGAGACTTCCTTTGC--CAACCATCTGCCCGTCAGCTTAGAT
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTT--TTT-CATCAATCATCTGCCCGTCGGCTTAGAC
** * ** * * *
1664214 TCG-GTAGA-TT-CTTCCATCAATCATCAACCTGTCAGCTTAGACTTGGGAGACTTTTCCATCAA
62 TCGAG-AGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAA
* * * * * * * * * **
1664276 TCATTTGCTCGTCAGTTTAGACCCGAGAGACTTTCTTTGTCAATTA
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * ** **
1664322 TTTGCCCATC-GACTCAAACCCGAGAGACTTCCTTT-GTCAATTGTCTGCCAATCGGCTTAGACT
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACT
* * * * * * * * * ** *
1664385 TGGGAGATTTCTTTTCTCAATCGTCTGCATGTCGACTTAGACTTGGGAGACTTTTTTATGAATCG
63 CGAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCG
* * * * * * * ** *
1664450 TTTACCTATTGACTTAGGCTCGAGAGACTT--TATCATCAATAG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCT-TTGTCAATCG
* * * * * * * * * ** * *
1664492 TTTGCCCATCGGCTTAGACTCGAAAGACTTCTTCATCCATTATCTACCCACCAGCTTAGAC-CTA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
** * * * *
1664556 GGAGACTTTGTTTGTTAATCGTTTACCTGTCGGCTTAGACTC-AGGAGACTTCTT-CATCAATCA
66 -GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGA-GAGACTT-TTCCATCAATCG
* * ** * *
1664619 TCTGCCC-TCCAGCTTAGACTTGGGAGACCTTTCC-AT-T-AATCA
127 TCTACCCAT-CGGCTTAGACCCGGGAGA-C-TTCCTTTGTCAATCG
* * * * * * ** * ** ** * * *
1664661 TCTACCCGTCAGCCTAAACTCG-GAGACTTTTCCACCAATTGTCTACCCACCAACTTAAACCCAA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
* * * ** * ** * ***
1664725 AACAGTT--TTCCATCAATCATCTGCCCCTCGGCTTAGACCCAAGAGACTTTCTTTGTCAATCGT
66 GAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTT-TCCATCAATCGT
* * * * * * *
1664788 TTACCCGTCGGCTTAGTCCCAGGAGACTTCTTTTATCAATCA
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * ** ** * *
1664830 TCAGCCCGT-TGACTTAAACCCGGGAGACTTCTTCATCCATTGTCTGCCCGTTAGCTTAGTCTTG
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * * * * * * * *
1664894 GGAGACTTCCTTTATCAACCCTCTACC-ATCGGCGTAGACTTGGGAGACTTTTTCATCAATCATC
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCGTC
* * * ** * *
1664958 TGCCCGTCGACTTAGACTAGGGAGAACTTTCC-AT-T-AATTG
129 TACCCATCGGCTTAGACCCGGGAG-AC-TTCCTTTGTCAATCG
* ** * *** * * * * * *
1664998 TCTACTTGTCAGTTTAGAGTTGCA-AGACTTTTCCATCAATCGTCTACCCGTTGGCTTAGACCCA
1 TCTGCCCGTCAGCTTAGACCCG-AGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * * * * *
1665062 AGAGACTTCCTTTATTAATCGCCTACCCGTCGGCTTAGACCCAAGAGACTTCCTT-TATCAATCA
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTT--TTCCATCAATCG
* * * *** **
1665126 TCTGCCCGTCGACTTAGACCTAAGAGACTTTTTTTTGTCAATCG
127 TCTACCCATCGGCTTAGACCCGGGAGAC-TTCCTTTGTCAATCG
* * * * * * * ** * * *
1665170 TCTGCCCTTCGGCTTAGACCTGAGAAACTTTTCCATCAATCGTCTACTAGTTGACTTGGACTCGA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
** ** * * * * * * * *
1665235 GAGACTT--TTCCATCAATCACCTGCCTGTAGGCTTTGACCCAAAAAACTCTTCCTTCAATCGTT
66 GAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCGTC
* * ** * * * *
1665298 TGCCCATTGATTTAGACTCAGGAAACTTCCTTTGTCAATCA
129 TACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* ** ** * * * * * * *
1665339 TCTTCCTATTGGCTCAGACCCGGGAGACTTCTTTTATTAATCATTTGCCCGTCGGCTTAAAC-CT
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT-TTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * * *
1665403 AGAAGACTTTCTTTGTCAATTGTTTG-CTCGTCGGCTTAGACATGGGAAACTTTTCCATCAATCG
65 AG-AGACTTCCTTTGTCAATCGTCTGCCT-GTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCG
* * * * * ***
1665467 TCTGCCTATTGGCTCAGACCCGGGAGACTT-CTTTATTTTTCG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * **
1665509 TCTACCCATCAGCTTAGACTCGGGAGACTTTTTCCTCAATCATCTGCCCGTTAGCTTAGACTC-A
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
* * * ** * * * *
1665573 TGAGACTTTTCC-AT-T-AATTGTCTACCCATCAGCTTAGACTCGGGAGATTTTTCTATCAATCG
66 -GAGAC--TTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCG
* * * **** * * *
1665635 -ATGCCTATCGGCTTAGACTTAAGAGAATTCCCTTGTCAATCA
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
*** * ** * * * * * * * * * *
1665677 TCTATTCATTGGCTCA-ATCTCGAGAGACTTCTTTTATCAATCGTTTACCTGTCGACTTAGTCTT
1 TCTGCCCGTCAGCTTAGA-CCCGAGAGACTT-TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* ** * ** * * ** * * **
1665741 GGGAGACTTTTTTTGTTAATTATTTTCCCATCGACTCAGACTC-ACGAGACTTTCTTTATCAATC
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGA-GAGACTTT-TCCATCAATC
* * * * ** *
1665805 GTCTGCCCATCGACTTAAACTCGAAAGACTTCCTTTGTCAATTG
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * ** * * *
1665849 TTTGCCTGTCTA-CTTAGATCTG-GTAGACTCTTCCATCAATCGTCTGCCTATTGACTTAGACCC
1 TCTGCCCGTC-AGCTTAGACCCGAG-AGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * *
1665912 GAGAGACTTTTCC-AT-T-AATTGTCTACCCGTCAGCTTAGACCCGAGAGACTTTCTTTC-TCAA
64 GAGAGAC--TTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGAC-TT-TTCCATCAA
* * * * * * * * * *
1665973 TCATCTGCTCGTCGGCTCAAACCCGAGAGACTTTCTTCGTCAATTG
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
** ** * * * *
1666019 TCTATCTATCGGCTTAGACCTGAAAGACTTCATTTC-TCAATCCTCTGCCCGTCGGCTTAGAC-C
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * * * * * *
1666082 TTAGAAACTT--TTTCATAAATTGTCTACCCT-TTGACTTA-ACCTCGGGAGACTTTTTCATCAA
64 -GAGAGACTTCCTTT-GTCAATCGTCT-GCCTGTCGGCTTAGA-C-CGAGAGACTTTTCCATCAA
* * * ** * * **
1666143 TCATCTGCCCATCGGTTTAGACCAAGGAGACTT-CTCTGTCCATTA
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
**** * * * * * * ** *
1666188 TCTGGTTATCAGCTTAGACCTGGGAGACTTCGTTT-GTCAATCGTCTCCCCATTTGCTTAGAATC
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
** * * * * * *
1666252 GAGAGACCTT--TTCATCAATCGTCTACCCGTCGACTTAGACCTGGGTA-ACCTTTCCATCAATT
64 GAGAGA-CTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACC-GAG-AGACTTTTCCATCAATC
* * ** *
1666314 GTCTGCCCGTCGGCTTAGA-CCTAGAGACTT--TTCTATCAATCG
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * * * * * *
1666356 TTTGCCCGTC-GACTTAGACCCGGGAGAGTTTTCCATCAATCATTTGCCCTTTGGCTTAGGC-CT
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* ** ** * * * *
1666419 AGGAGACTTCCTTTTTCAATCGTCTGCCCATTAGCTTAGTCCAAGGAGACTTCATT-TATCAATT
65 A-GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGACTT--TTCCATCAATC
* * * *** * **
1666483 GTCTGCCCATCAGCTTAGACCCGAGAGACTTCC-CCATCCATTA
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * ** ** * * *
1666526 TCTGTCCGTCGGCTTAGA-CCTAGGAGACTTTGTTTGTCAATTGTCTACCTGTTGGCTTAGACTC
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTTT-TTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * * * * * *
1666590 -AGAGACTT--TTTCATAAATCATCTACCTGTCGACTTATACTTGGGAGACCTTTCCATCAATTG
64 GAGAGACTTCCTTT-GTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCG
* * * * **
1666652 TTTGCCCGTCGGCTTAGA-CCTGGAGACTT--TTCCATCAATCG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * * * * * * *
1666693 TTTTCCAGTC-GACTTAGACCCGGGAGAGTTTTCCATCAAACGTCTGCCCGTTGTCTTAGACCTC
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGA-CTC
* * * ** * *
1666757 -ATAGACTTCTTTTGTCAATCGTTTGCCCATCGGCTTAGTCCGAAGAGACTTCATT-TATCAATC
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCG-AGAGACTT--TTCCATCAATC
* * ** * * **
1666820 GTCTTCCCGTCGGCTTAGACCTTGGAGATCTCTCC---ATCCATTA
126 GTCTACCCATCGGCTTAGACCCGGGAGA-CT-TCCTTTGTCAATCG
* ** * ** * ** ** *
1666863 TCTGCCCATTGGCTTAGA-CCTAGGAGACTTTGTTTGTCAATCGTCTAACCGTCAACTTAGACTT
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTTT-TTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * ** * *
1666927 GAGAGACTT--TTTCATCAATCGTCTACCCATCGGCTTAGACTGATGATACCTTTT-CATCAATC
64 GAGAGACTTCCTTT-GTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGA-CTTTTCCATCAATC
* * ** **
1666989 GTCTGCTCATCGGCTTAGA-CCTAGAGACTT--TTCCATCAATCG
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * * *
1667031 TTTGCCTGTC-GACTTAGACCC-AGGAGAGTTTTTCATCAATTATCTTCCCCTCGGCTTAGAC-C
1 TCTGCCCGTCAG-CTTAGACCCGA-GAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * ** * * * * * *
1667093 TAGGAGACTT-TTTGTGTCAATTGTCTGCCCATCGACTTAGTCTCGGGACACTTCCTT-TATTAA
64 GA-GAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTT--TTCCATCAA
* ** * * ** * ** * *
1667156 TTGTCTGTCCGTCAGCTTAGAATCGAGAGACTT-CTTCATCCATTG
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * * ** * *
1667201 TCTGCCCGTTAGCTTAGTCCTGGGAGACTTCCTTTAATGATTCCTCTGCCTATCGGTTTAGACTG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * *
1667266 GAAAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACTCGAGAGACCTTTT-CATCAATC
64 GAGAGACTTCCTTT-GTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGA-CTTTTCCATCAATC
* * *** *** ** *
1667328 ATCAACTTGTCGGCTTAGAGTTGGGAGACTT--TTCCATCAATCA
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * *
1667371 TCTACCTGTCAGCTTAGACCC-AGGAGACTTCCTTT-ATCAATCTTCTGCCCATCGGCTTAGACT
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACT
** * * ** *
1667434 TAAGAGACTTCTTTTGTCAATCGTCTGCCCGTCGGCTTAGACTTAGAGACTTTTCCATCAATTGT
63 CGAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGAGAGACTTTTCCATCAATCGT
* ** * * * *
1667499 CTACCCATCGGCTTAGACCTGAAAGAGTT--TTCTATTAATCA
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * * * * * *
1667540 TCTACCCCT-TGACTTAGGCCCAAGAGACTTCCTTT-GTCAATCGTCTGCCCATCGGCTTAGTCG
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGAC-
* * * ** * *
1667603 T-GAGAGACTTCTTTTATCAATCATC-GACCCATCGGCTTAGACTCGGGAGACTTCTT-CATCCA
62 TCGAGAGACTTCCTTTGTCAATCGTCTG-CCTGTCGGCTTAGAC-CGAGAGACTT-TTCCATCAA
* * * * ** * ** * * *
1667665 TTGTCTGCTCGTTAGCTTAGTCCTAGGAGACTTCCTTTATCAACCC
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
** * * *
1667711 TCTGCCTATCAGCTTAGACTCGGGAGACTTTTTCATCAATCATTTGCCCGTCGGCTTAGAC-CTG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTC-G
* * * * ** *
1667775 AGAGA---CCTTTCCATCAATCATCTGCTTATCGGCTTAGAGTTGGGAGACTTTTCCATCAATCG
65 AGAGACTTCCTTT--GTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCG
** * ** * * *
1667837 TCTACCTGTCGGCTTGGACCCAAGAGACTTCATTTATTAATC-
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * *
1667879 ACTTGCCTGATGA-CTTAGA-CCTAGGAGACTTCCTTT-ATCAATCTTTTGCCCATTGGCTTAGA
1 TC-TGCCCG-TCAGCTTAGACCCGA-GAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGA
* ** * *
1667941 C-CTGGGAGACTTTTTTTGTCAATCGTCTGCCTGTCGGCTTAGACCTAGGAAACTTTTCCATCAA
61 CTC-GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGACTTTTCCATCAA
** * * ** * ** *
1668005 TCGTCTACCTGTTGACTTAGACTTGAGAGACTT--TTCCATCAATCA
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * ** * * * * *
1668050 CCTACCCATTGGCTTAGACCC-AGAAGACTATTCCTTCAATCGTCTGCCCGTCGGCTTAGACCCG
1 TCTGCCCGTCAGCTTAGACCCGAG-AGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * ** * * ** * *
1668114 AGAAACTTCCTTTTTCAATCATCTTCCCATCGAG-TCAGACCCGGGAGACTTCTTTTATCAACCA
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCG-GCTTAGA-CCGAGAGACTT-TTCCATCAATCG
* * * ** * *
1668178 TCTGCCCGTCAGCTTAGACCTAGAAGACTTTCTTTGTCAATCG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * ** ** * * * ** * *
1668221 TCTGCTCATTGGCTTAGACATGATAAACTTTTCCATCAATCATCTGCTTGTCGGCTCAGACCTGG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGA-CTCG
* *** * * ** ** *
1668286 A-AGACTT-CTTTATTTTTTGTCTACCCATTAGCTTAGACCCGAGAGACTTTTTCC-TCAATCAT
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGAC-TTTTCCATCAATCGT
* ** * * * * * *
1668348 CTGCCCATTAGCTTATACTCGTGAGTCTT--TTCCGTCAATTG
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * * * * * * * *
1668389 TCTGTCTGTCAACCTAAACTCGAGAGA-TTTTTCCATCAATCA-ATGCCCATCGGCATAGACCCA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTT-CATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * * * * * *
1668452 AGAGAATTCCCTTGTCAATCATCTAGTC-ATCGACTCA-ATCTTGGGAGACTTCCTT-CA-CAAT
65 AGAGACTTCCTTTGTCAATCGTCT-GCCTGTCGGCTTAGA-C-CGAGAGACTT--TTCCATCAAT
* * * ** * * * * * **
1668513 CATTTACCTATCAACTTAGTCTCGGGTGACCTT-TTTTGTTAATTA
125 CGTCTACCCATCGGCTTAGACCCGGGAGA-CTTCCTTTGTCAATCG
* * * * * * ** *
1668558 TGTGCCCATC-GACTCAAACCC-AGCAGACTTCCTTT-ATCAATCGTGTGCTTGTCGACTTAGAC
1 TCTGCCCGTCAG-CTTAGACCCGAG-AGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGAC
* * * * *
1668620 TCG-GAAGACTTCCTTTGTTAATCATTTGCCTGTCGGCTTAGATCCG-GTAGACTCTTCCATCTA
62 TCGAG-AGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAG-AGACTTTTCCATCAA
* * * * * ** * ** *
1668683 TCGCCTGCCTATCAGCTTATATTCGAGAGACTT--TTCCATCAATTG
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * ** * * * * ** * *
1668728 TTTACCTATCGGCTTAGACCCGAGAGACTTTCTTTC-TCAATCATCAGCTCATCTACTCAGACCC
1 TCTGCCCGTCAGCTTAGACCCGAGAGAC-TT-TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * *
1668792 GAGAGACTTCCTTTATCAATCGTCTACCTGTCGGTTTACACTCGAGAGACTTCATAT-C-TCAAT
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTT--T-TCCATCAAT
* * * ** * ** *
1668855 CGTCTCCCCGTTGGCTTAGACCCAAGAAACTT--TTCCATCAATTG
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * * * * ** * * * *
1668899 TTTACCCGT-TGACTTAAACTCGGGAGACTTTTCCATCAATTGTTTGCCTGTCGGCTTAGACCCA
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* *** ** ** * ** * *** *
1668963 AAAGACTT-CTCCATCCGTTAT-TACCCATCGGCTTAGACCTGGGAGACTTTATTTGTCAATCAT
65 AGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTTT-TCCATCAATCGT
** ** ** * *
1669026 CT-CATTATC-AATTAGACTTGAGAGACTT--TTTCATCAATCG
128 CTAC-CCATCGGCTTAGACCCGGGAGACTTCCTTT-GTCAATCG
* * * * * * ** * * * *
1669066 TCTACCCATC-GACTTAGACTCGGGAGACCTTTCCATCAATTGTTTGCCCCTCGACTTAGAC-CT
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
** * * ** ** * * *
1669129 AGAGACTT--TTCCATCAATTGTGTGCCCATCAACTTAGACCCGGGAGAGTTTTCCATCAATTGT
65 AGAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCGT
* ** * * *
1669192 CTACCCCTCGGCTTAGACCTAGGAAACTTTCTTTATCAATCG
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * *
1669234 TCTGCCCATC-GACTTAG-TCTGAGGAGACTTCATTT-ATCAATCGTTTACCCATCGGCTTTA-A
1 TCTGCCCGTCAG-CTTAGACCCGA-GAGACTT--TTTCATCAATCATCTGCCCGTCGGC-TTAGA
* *** * ** * ** * * **
1669295 C-CTGGGAGACTT-CTCCATCCATTATCTACCCATCAG-TTAGACCTAGGAGACTTCGTT-TGTC
61 CTC-GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGACTT--TTCCATC
* * * * * ** ** * *
1669356 AATCATTTACCCGTAGACTTAGACTTGATAGACTT--TTTCATCAATCA
122 AATCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTT-GTCAATCG
* * * *
1669403 TCTACCCGTCAGCTTAGATCC-AGGAGACCTTTTCATCAATCATCTGCTCGTCGGCTTAGACAT-
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGAC-TC
* * ** * * * * ***
1669466 GGGAAACTT--TTCCATCAATCATCTGCTTGTCGGCTCAGACCTG-GAAGACTTCTT-TATTTTT
64 GAGAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGACC-GAG-AGACTT-TTCCATCAAT
* * * * *
1669527 TGTCTACCCATTGGCTTAGACCCAGGAGACTT--TTTCCTCAATCA
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTT-GTCAATCG
* * * *** * * * *** ** * *
1669571 TCTGCCCATTAGCTTATAGTTGTGAGTCTTTTCCATCAATTGCCTGCCCGTCAACCTAAACTCGA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
* ** ** * * * *
1669636 GAGA-TT--TTTCCATCAATC-AATGCCCATCGGCTTAGACCCAAGAGA-ATTCCCTTGTCAATC
66 GAGACTTCCTTT--GTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCC--ATCAATC
* ** * * ** * *
1669696 ATCTAGTCATCGACTCA-ATCTTGGGAGACTTCCTTT-ACAATCA
126 GTCTACCCATCGGCTTAGA-CCCGGGAGACTTCCTTTGTCAATCG
* ** * * * * * ** * * * * * * * *
1669739 TTTGCCTATCAACTTAGTCTCGGGTGACTTTTTTTGTTAATTATGTGCCCATCGACTCAAAC-CT
1 TCTGCCCGTCAGCTTAGACCCGAGAGAC-TTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * * * ** *
1669803 AGCAGACTTCCTTTATCAATCGTGTGCCTGTTGACTTAGGCCTGAAAGACTTCCTT-TGTTAATC
65 AG-AGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTT--TTCCATCAATC
* * ** * * * *** *
1669867 -ACTTGCCTGTTGGCTTAGATCCGGTAGAC-T-CTTCCACCTATCG
126 GTC-TACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
** * * ** * ** * ** *
1669910 TCTGCCTATCAACTTATATTCGAGAGACTTTTCCATCAATTGTCTACCTATCGGCTTAGACCCGA
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
* * * * * * **
1669975 GAGACTTTCTTTCTCAATCATCAG-CTCATCGGCTCAGACCAGAGAGACTTCCTT-TGTCAATCG
66 GAGACTTCCTTTGTCAATCGTCTGCCT-GTCGGCTTAGACC-GAGAGACTT--TTCCATCAATCG
** * * * * * * *
1670038 TCTACCTGTCGGTTTAGACTCGAGAGACTTCATATCTCAATTG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* ** *** * * ** * * * * * *
1670081 TCTGCCCATTGGCTTAGACTTAAGAAACTTTTCCATCAATTGTTTACCCGTTGACTTAAACTCGG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
** * * * * * **
1670146 GAGACTT--TTCCATCAATTGTTTGCCTGTCGGCTTAGACTCGAAAGACTTCTCCATCCATTAT-
66 GAGACTTCCTT-TGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCGTC
* * * *
1670208 TACCCATCGGCTTAGACCTGGCAGACTTCATTTGTCAATCA
129 TACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * ** * * * * *
1670249 TCT-CATCATCGGGTTAGACTTGAGAGACGTTTTCATCAATCGTCTACCCATCGACTTAGACTCG
1 TCTGC-CCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * * ** * * *
1670313 GGAGA---CCTTTCCATCAATTGTTTACCCCTTGACTTAGACCTG-GAGACTTTTCCATCAATTG
65 AGAGACTTCCTTT--GTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTTTTCCATCAATCG
* * ** * ** *
1670374 TTTGCCCATCAACTTAGACCCGGGAGAGTT--TTCCATCAATTG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTT-TGTCAATCG
* * * * * * * * *
1670416 TCTACCCCTCGGCTTAGA-CCTAGGAGACTTTCTTTATCAATCGTCTGCCCATCGACTTAGTC-C
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTTT-TTCATCAATCATCTGCCCGTCGGCTTAGACTC
** * * * ** * * * * * *
1670479 GAGGAGACTTTATTTATCAATCGTTTACCCATTGGCTTTA-ACCTGGGAGACTTCTCTATCCATT
64 GA-GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGC-TTAGACC-GAGAGACTTTTCCATCAATC
* * ** *
1670543 ATCTTCCCATCGG-TTAGACCTAGGAGACTTCGTTTGTCAATCG
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * *
1670586 TTTGCCCGT-AGACTTAGACTCGAGAGACTTTTTCATCAATCGTCTACCCATCAGCTTA-AATCC
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * *
1670649 AGAAGAGTT--TTTCATCAATCATCTG-CTCGTCGGCTTAGACCTAGAGACTTTTTCATCAATCG
65 AG-AGACTTCCTTT-GTCAATCGTCTGCCT-GTCGGCTTAGACCGAGAGACTTTTCCATCAATCG
** ** * * * *
1670711 T-TTGCCATCAACTTAGAGCCGGGAGAGTTTTCC-AT-T-AGTCG
127 TCTACCCATCGGCTTAGACCCGGGAGA--CTTCCTTTGTCAATCG
* * * * ** * * *
1670752 TCTTCCCAT-TGACTTAGA-CCTAGGAGACTTTCTTTGTCAATCGTCTGCCCATCGGCTTAGTCT
1 TCTGCCCGTCAG-CTTAGACCCGA-GAGACTTT-TTCATCAATCATCTGCCCGTCGGCTTAGACT
* * * *
1670815 CGAGAGACTTCCTTTGTCAAT-GATCTGTCC-GTCGGCTTAGAATCGGGAGACTTCTT-TATCCA
63 CGAGAGACTTCCTTTGTCAATCG-TCTG-CCTGTCGGCTTAG-ACCGAGAGACTT-TTCCATCAA
* * * ** ** * * * * *
1670877 TTGTTTGCCTGTTAGCTTAGTCCTGGGAGACTTCCTTTATCAACCC
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * ** *
1670923 TCTGCCCATCAACTTAGA-CCTAGGAGACTTTTTAATCAATCGTCTGCTTGTCGGCTTAGACCCG
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * * * ** *
1670987 GGAGA---CCTTTCCATCAATTGTCTACCTGCCGGTTTAGACCCGAGAGACTTTTTTATCAATTG
65 AGAGACTTCCTTT--GTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCG
* * ** * * *
1671049 TCTGCCCATCAGCTTAGACCTAGAAGACTTCCTTTATCAATCA
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
** * * * * *
1671092 TCTGCCCGTTGGCTTAGACTCGGGAGA-TTTCATTTATTAATCATCTGCCCGTCAGCTTAGACTC
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTT--TTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * **
1671156 GAGAGAC-T-CTATTATCAATCGTATGCCCGTCGGCTTAGACCCGGGAGACTTTTCCATCAATTA
64 GAGAGACTTCCT-TTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCG
* * * ** ** *
1671219 TCTGCCCGTTGGCTTCA-ACCCTAGAGACTT--TTT-T-TTTTG
127 TCTACCCATCGGCTT-AGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * ** *
1671258 TCTACCCATCAGCTTAAACCCG-GAAGACTTTTTAATCAATCGTCTGCCCATTAGCTTAGACTCA
1 TCTGCCCGTCAGCTTAGACCCGAG-AGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * *
1671322 AGAGACTTTTCC-AT-T-AATTGTCTGCCCGTCGACTTAGACTCGGGAGACTTTTCCATCAATCG
65 AGAGAC--TTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAATCG
* * ** * * * * *
1671384 -ATGCCCATTAGCTTAGACCCGAGAGAATTTCTTTATCAATTG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
** * * * * * * * * * * *
1671426 TCTGTTCATC-GGTTCAAACCCAAGAGACTTTTTATATCAATCGTTTACCCATCAGCTTAGTCTC
1 TCTGCCCGTCAGCTT-AGACCCGAGAGACTTTTT-CATCAATCATCTGCCCGTCGGCTTAGACTC
* * * ** * ** * *
1671490 GGGAGACTT-TTTTCATCAATTATCTACCCATCGGCTCAGACCTGGGAGA--TTTCCTTTATCAA
64 GAGAGACTTCCTTT-GTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTTTTCC---ATCAA
* * * *
1671552 TCATCTGCCCATCGACTTAGACCCGGGAGACTTCCTTTGTCAATCA
124 TCGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * ** ** *
1671598 TTTGCCTGTCGGCTTAGA-TC-AGTAGACTCTTCCATCAATCGTCTGCCTATTAGCTTAGACCCG
1 TCTGCCCGTCAGCTTAGACCCGAG-AGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * ** * *** *
1671661 AGAGA-TT--TTTCCATTAATCGTCTACCTATTAGCTTAGA-CTAGGAGACTTTCTTTGTTAATC
65 AGAGACTTCCTTT--GTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGACTTT-TCCATCAATC
* * * * * * * *
1671722 ATCTGCTCGTCGGCTTAGACCCGAGAGACTGCCTTTGTTAATCA
126 GTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* ** ** * * * * ** *
1671766 TCTACCTATTGGCTTAGACCCAAGAGACTTCTTTTC-TTAACCATCTACCTATCGACTTAGACTC
1 TCTGCCCGTCAGCTTAGACCCGAGAGAC-T-TTTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * *
1671830 GAGAAACATTTCC---ATCAATTGTCTACCCT-TCGACTTAGACTTGAGAGACTTTTCCATCAAT
64 GAGAGAC--TTCCTTTGTCAATCGTCT-GCCTGTCGGCTTAGAC-CGAGAGACTTTTCCATCAAT
* * * * * * *
1671891 CGTTTACCCGTCTGCTTAGACCTGGAAGACTTCATTTGTCAATCA
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * ** * * * * *
1671936 TCTACTCGTCGGCGTAGACTCGAGAGACTTTTTCATTAAAAATTTGCTCATGGGCTTA-AGCCCG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGA-CTCG
** * * *
1672000 AGAGACCTT--TTCATCAATCGTCTGCCCGTCGGCTTAGATCTG-GAGACTTTACCATCAATCGT
65 AGAGA-CTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCGT
* * * * ** * * *
1672062 TTGCCCATCGACTTAGGCCCAAGAGAGTT--TTTCATCAATTG
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTTT-GTCAATCG
* * * * * * * * *
1672103 TCTGCCCCTCAACTTAGA-CCTAGGAGACTTCCTTT-GTCAATCGTTTG-CCATCGACTTAGTCT
1 TCTGCCCGTCAGCTTAGACCCGA-GAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACT
* * * * ** * * *
1672165 TGAGAAACTTCTTTTATCAATCGTCTGCCCATTGGCTTAGAATC-AGGAGACTTCTT-CATCCAT
63 CGAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAG-ACCGA-GAGACTT-TTCCATCAAT
* * ** * * * * *
1672228 TGTCTACCCGTTAGCTTAGTCTCGGGAGACTTCCTTTATCAACCC
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * ** * * * * * * *
1672273 TTTGCCCATC-GACTTAGAGTCGGGAGACTTTCTCATCAATCGTCTGCCCGTTGACTTAAAGTCG
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCG
* * * * ** * *
1672337 GGAGACCTT--TCTATCAATCATCAACCTGTCGGCTTAGACCCAAGAGACATTTCCATCAATCGT
65 AGAGA-CTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCGT
* ** ** * *
1672400 CTGCCCATCGAG-TTAGACCTAGTTGACTTCCTTTATCAATCA
128 CTACCCATCG-GCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * *
1672442 TCTGCCCGTCAGCTTAAACCCGGGAGACTTCCTTT-ATCAATCATCTGCCCATCAGCTTAGACTC
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * ** ** **
1672506 GAAAGACTTCTTTTGTCAATCGTCTGCCCATCGGCTTAGACTTAGGAGACAATTCCATCAATCGT
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGACTTTTCCATCAATCGT
* ** * *
1672571 CTATCCATCGGCTTAGACTTGGAACACTTCCTTTGTCAATCG
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * *
1672613 TCTGCTCGTCGGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCTGTTGGTTTAGACACGG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
* * * * * *
1672678 GAGACTTCCTTTATTAATCATCTACCTGTCGGCTTAGATCCGGGAGACTTTTCTATCAATCGTCT
66 GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCGTCT
* ** * * *
1672743 GCCTGTTGGCTTAGACCCGGGAGACTTCCTTTATCAATTG
130 ACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * ** * * *
1672783 TTTGCCCGTTAGCTTAAACCTGAGAGACTTTTCCATCAATTGTATGCCCGTCGGCTTAAACTCGG
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
* * * * *
1672848 GAGACTTCCTTTATCAATTGTCTGCCTGTCAGCTTAGACCTGAGAGAGTTTTCCATCAATCATCT
66 GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTTTTCCATCAATCGTCT
** * * * *
1672913 ACCTGTCAGCTTAAACTCGTGAGACTTCCTTTGTCAATCG
130 ACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * *
1672953 TCTACCCATC-GACTTAGACCCGAGAGACTTTTTTC-TCAATCATCTGCCCATCGGCTTAGACCC
1 TCTGCCCGTCAG-CTTAGACCCGAGAGAC-TTTTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * * * * *** *
1673016 GGGAGATTTTCTTTATCAATCGTCTGCTTGTCAGCTTAGGCCCAGGAGACTTTTTTTGTTAA---
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGA-GAGAC-TTTTCCATCAATCG
* * * * *
1673078 T-TACCCATCAGCTCAGACCTGGGAGACTTCTTTTGTCAATTG
127 TCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * * * *
1673120 TCTGCCCATCAGTTTAGACCCGAGAGACTTTTCCTTCAATTATCTAG-CTGTCGGTTTAAAC-CT
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCT-GCCCGTCGGCTTAGACTC-
* * * * * *
1673183 GAGACACTTCATTTGTCAATCATCTGCCTATCGGCTCAGACCCGAGAGACTTTTCCATCAATCAT
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGA-CCGAGAGACTTTTCCATCAATCGT
* * * ** *
1673248 CTACCCATCGACTTAAACTCGGGAGACTTTTTTTTGTTAATCG
128 CTACCCATCGGCTTAGACCCGGGAGAC-TTCCTTTGTCAATCG
* * * * *
1673291 TCTGCTCATC-GACTTAGACCCGGGAGA-TTTTTCCATCAATCGA--TGCTCATCGGCTTAGACT
1 TCTGCCCGTCAG-CTTAGACCCGAGAGACTTTTT-CATCAATC-ATCTGCCCGTCGGCTTAGACT
* * * * *
1673352 TGAAAGACTTCCTTTGTCAATCGTCTGCCTATCGGCTCAGACCTGAGAGACTTCCTT-TATCAAT
63 CGAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTT--TTCCATCAAT
* * ** * * **
1673416 TGTCTACCCATCGACTTAGATTCGAGAGACTTCTTTTGTCAATTA
125 CGTCTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * *
1673461 TCTGCCTGCCAGCTCAGACCCGGGAGACTTCCTTT-ATCAATCATCTGCCCGTCGGCTTAGACCC
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTT--TTTCATCAATCATCTGCCCGTCGGCTTAGACTC
* * * * * *
1673525 GAGAGACTTTCTTTGTCAATCGTCTACCCGTCGGCTTAGACCTGAAAGACTTTTCCATGAATTGT
64 GAGAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACC-GAGAGACTTTTCCATCAATCGT
* * ** * * *
1673590 TTGCCTGTTGGCTTAGACCCGGGAGACTTTCTTTGTCAATCA
128 CTACCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
* * * * * *
1673632 TCTGCTCGTCGGCTTATACCTGGGAGACTTTTTCATCAATCGTCTGC
1 TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGC
1673679 TTATCGACTC
Statistics
Matches: 14813, Mismatches: 4455, Indels: 2220
0.69 0.21 0.10
Matches are distributed among these distances:
159 5 0.00
160 41 0.00
161 107 0.01
162 69 0.00
163 8 0.00
164 34 0.00
165 113 0.01
166 310 0.02
167 986 0.07
168 2123 0.14
169 3221 0.22
170 3946 0.27
171 2811 0.19
172 723 0.05
173 131 0.01
174 27 0.00
175 3 0.00
176 38 0.00
177 7 0.00
178 5 0.00
179 48 0.00
180 29 0.00
181 17 0.00
182 9 0.00
183 2 0.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (169 bp):
TCTGCCCGTCAGCTTAGACCCGAGAGACTTTTTCATCAATCATCTGCCCGTCGGCTTAGACTCGA
GAGACTTCCTTTGTCAATCGTCTGCCTGTCGGCTTAGACCGAGAGACTTTTCCATCAATCGTCTA
CCCATCGGCTTAGACCCGGGAGACTTCCTTTGTCAATCG
Found at i:1673517 original size:129 final size:128
Alignment explanation
Indices: 1673356--1673676 Score: 351
Period size: 129 Copynumber: 2.5 Consensus size: 128
1673346 TAGACTTGAA
* ** * *
1673356 AGACTTCCTTTGTCAATCGTCTGCCTATCGGCTCAGACCTGAGAGACTTCCTTTATCAATTGTCT
1 AGACTTCCTTTGTCAATCATCTGCCCGTCGGCTTAGACCTGAGAGACTTCCTTTATCAATCGTCT
* * ***
1673421 ACCCATCGACTTAGA-TTCGAGAGACTTCTTTTGTCAATTATCTGCCTGCCAGCTCAGACCCGGG
66 ACCCATCGACTTAGACCT-GAAAGACTT-TTCCATCAATTATCTGCCTGCCAGCTCAGACCCGGG
* * * *
1673485 AGACTTCCTTTATCAATCATCTGCCCGTCGGCTTAGACCCGAGAGACTTTCTTTGTCAATCGTCT
1 AGACTTCCTTTGTCAATCATCTGCCCGTCGGCTTAGACCTGAGAGACTTCCTTTATCAATCGTCT
* * * * * *** *
1673550 ACCCGTCGGCTTAGACCTGAAAGACTTTTCCATGAATTGTTTGCCTGTTGGCTTAGACCCGGG
66 ACCCATCGACTTAGACCTGAAAGACTTTTCCATCAATTATCTGCCTGCCAGCTCAGACCCGGG
* * * *
1673613 AGACTTTCTTTGTCAATCATCTGCTCGTCGGCTTATACCTGGGAGACTT--TTTCATCAATCGTC
1 AGACTTCCTTTGTCAATCATCTGCCCGTCGGCTTAGACCTGAGAGACTTCCTTT-ATCAATCGTC
1673676 T
65 T
1673677 GCTTATCGAC
Statistics
Matches: 160, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
126 3 0.02
127 10 0.06
128 69 0.43
129 77 0.48
130 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.33
Consensus pattern (128 bp):
AGACTTCCTTTGTCAATCATCTGCCCGTCGGCTTAGACCTGAGAGACTTCCTTTATCAATCGTCT
ACCCATCGACTTAGACCTGAAAGACTTTTCCATCAATTATCTGCCTGCCAGCTCAGACCCGGG
Found at i:1673788 original size:170 final size:170
Alignment explanation
Indices: 1673525--1673854 Score: 380
Period size: 170 Copynumber: 1.9 Consensus size: 170
1673515 GCTTAGACCC
* * * *
1673525 GAGAGACTTTCTTTGTCAATCGTCTACCCGTCGGCTTAGACCTGAAAGACTTTTCCATGAATTGT
1 GAGAGACTTCCTTTATCAATCGTCTACCCGTAGGCTTAGACCTGAAAGACTTTTCCATCAATTGT
** * * * * * * * * *
1673590 TTGCCTGTTGGCTTAGACCCGGGAGACTTTCTTTGTCAATCATCTGCTCGTCGGCTTATACCTGG
66 TTGCCTGTCAGCTTAGACCCGAGAGACTTCCTTTATCAACCATCTGCCCATCGACTTAGACCTGA
*
1673655 GAGACTTTTTCA-TCAATCGTCTGCTTATCGACTCAATCCT
131 AAGACTTTTTCATTC-ATCGTCTGCTTATCGACTCAATCCT
* * *
1673695 GAGAGACTTCCTTTATTAATCGTCTACCCGTTAGG-TTAGACCTGAGAGACTTCTTCC-TCCATT
1 GAGAGACTTCCTTTATCAATCGTCTACCCG-TAGGCTTAGACCTGAAAGACTT-TTCCATCAATT
* * * *
1673758 GTTTGCTTGTCAGC-TATGTCCCGAGAGACTTCCTTTATCAGCCCTCTGCCCATCGACTTAGACC
64 GTTTGCCTGTCAGCTTA-GACCCGAGAGACTTCCTTTATCAACCATCTGCCCATCGACTTAGACC
*
1673822 TGAAAGACTTTTTTATTCATCGTCTGCTTATCG
128 TGAAAGACTTTTTCATTCATCGTCTGCTTATCG
1673855 GTTTAGACCC
Statistics
Matches: 132, Mismatches: 24, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
169 2 0.02
170 121 0.92
171 9 0.07
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (170 bp):
GAGAGACTTCCTTTATCAATCGTCTACCCGTAGGCTTAGACCTGAAAGACTTTTCCATCAATTGT
TTGCCTGTCAGCTTAGACCCGAGAGACTTCCTTTATCAACCATCTGCCCATCGACTTAGACCTGA
AAGACTTTTTCATTCATCGTCTGCTTATCGACTCAATCCT
Found at i:1674356 original size:169 final size:167
Alignment explanation
Indices: 1674037--1674473 Score: 558
Period size: 169 Copynumber: 2.6 Consensus size: 167
1674027 CTCAGTCTCT
*
1674037 GATCAAC-CTTTATCCTTCATTCACCTGTCGGCTTGGTCCTAGGTATTTCCTTTTATCTTTTGTT
1 GATCAACTTTTTATCCTTCATTCACCTGTCGGCTTGGTCCTAGGTATTT-CTTTTATCTTTTGTT
* * * * * * ***
1674101 GACTTGTTGGTCCACTCC-CGATCAGCTTTTTTATCCTTTGTTTACCCACTGGCCCAGTCCTTGG
65 GACTTGTCGGTCCAATCCTAG-TCAACTTTTTTATCCTTTGTTTACCCACCGACCCAGTCCTCAA
* *
1674165 AAAATCCTTTATGCCTCGTTGACTTATCGGTTTAATCCC
129 AAAATCCTTTATCCCTCGTTGACTTATCAGTTTAATCCC
* * * *
1674204 -AGTCAACTTTTTATCCTTCATTCCCCTATGGGCTTGGTCTTAGGTACTTTCTTTTATCTTTTGT
1 GA-TCAACTTTTTATCCTTCATTCACCTGTCGGCTTGGTCCTAGGTA-TTTCTTTTATCTTTTGT
*
1674268 TTACTTGTCGGTCCAATCCTAGTCAACTTTTTTTATCCTTTGTTTACCCACCGACCCAGTCC-CA
64 TGACTTGTCGGTCCAATCCTAGTCAAC-TTTTTTATCCTTTGTTTACCCACCGACCCAGTCCTCA
*
1674332 AATAAATCCTTTATCCCTCGTTGACTTGTCAGTTTAATCCC
128 AA-AAATCCTTTATCCCTCGTTGACTTATCAGTTTAATCCC
* ** * *
1674373 GATCAACTTTTTATCCTTCATTCACCTGTCGACTCAGTCCTAGGTATTTCTTTTTATATTTTATT
1 GATCAACTTTTTATCCTTCATTCACCTGTCGGCTTGGTCCTAGGTATTTC-TTTTATCTTTTGTT
* *
1674438 GACTTGTCGGTCTAATCCTAGTCAACTTCTTTATCC
65 GACTTGTCGGTCCAATCCTAGTCAACTTTTTTATCC
1674474 CTTACCTGTT
Statistics
Matches: 232, Mismatches: 30, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
166 1 0.00
167 5 0.02
168 81 0.35
169 144 0.62
170 1 0.00
ACGTcount: A:0.18, C:0.27, G:0.13, T:0.43
Consensus pattern (167 bp):
GATCAACTTTTTATCCTTCATTCACCTGTCGGCTTGGTCCTAGGTATTTCTTTTATCTTTTGTTG
ACTTGTCGGTCCAATCCTAGTCAACTTTTTTATCCTTTGTTTACCCACCGACCCAGTCCTCAAAA
AATCCTTTATCCCTCGTTGACTTATCAGTTTAATCCC
Found at i:1676025 original size:162 final size:163
Alignment explanation
Indices: 1675837--1676218 Score: 432
Period size: 162 Copynumber: 2.3 Consensus size: 163
1675827 TGATTTTCTT
* *
1675837 ATCCGTAAA-TTTTTTAGGAGGATTTTTCTTAATTTTTAATTTTTAAAATTTATCAAATAT-TTT
1 ATCCGTAAATTTTTTTAGG-GGATTTTTCTTAATTTTTAATTTTTAAAATTTATCAAAAATCATT
* * * * * * * *
1675900 CATTTATTTTATATTAATTTAGTTTTCAAAAATTCATTTATTTTCATGAGTTTTTGAATTTTTTC
65 -ATCTATTTCATATGAATTCAGTTTTAAAAAATTAATTCATTTTCAGGAG-TTTTGAATTTTTTC
1675965 CTTGAA-TTT-TTTTTC-GAAATACGATGTTTGCTA
128 CTTGAATTTTCTTTTTCTGAAATACGATGTTTGCTA
** * *
1675998 ATCCGTAAATTTTTTTAAGGGGATTTTTCTTGGTTTTTAATTTTTAAAATTCATTAAAAATCATT
1 ATCCGTAAATTTTTTT-AGGGGATTTTTCTTAATTTTTAATTTTTAAAATTTATCAAAAATCATT
* *
1676063 GTCTATTTCATATGAATTCAGTTTTAAAAAATTAATTCATTTTCAGGAGTTTTGAATTTTTTTCT
65 ATCTATTTCATATGAATTCAGTTTTAAAAAATTAATTCATTTTCAGGAGTTTTGAATTTTTTCCT
* *
1676128 TGAATTTTTTCTTTTTCTGAAATATGATGTTTTCTA
130 TGAA--TTTTCTTTTTCTGAAATACGATGTTTGCTA
* * * * * ** *
1676164 CTCCGTAAATTCTTTTGAGAGGATTTTTCTCAATCTAAAATTTTTAAAATGTATC
1 ATCCGTAAATT-TTTTTAGGGGATTTTTCTTAATTTTTAATTTTTAAAATTTATC
1676219 TATTATCGTC
Statistics
Matches: 182, Mismatches: 30, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
161 28 0.15
162 82 0.45
163 5 0.03
164 3 0.02
165 6 0.03
166 54 0.30
167 4 0.02
ACGTcount: A:0.29, C:0.09, G:0.10, T:0.52
Consensus pattern (163 bp):
ATCCGTAAATTTTTTTAGGGGATTTTTCTTAATTTTTAATTTTTAAAATTTATCAAAAATCATTA
TCTATTTCATATGAATTCAGTTTTAAAAAATTAATTCATTTTCAGGAGTTTTGAATTTTTTCCTT
GAATTTTCTTTTTCTGAAATACGATGTTTGCTA
Found at i:1677814 original size:127 final size:126
Alignment explanation
Indices: 1677604--1677911 Score: 348
Period size: 127 Copynumber: 2.4 Consensus size: 126
1677594 GATTAATAAT
* * * * * *
1677604 TTTTTAATCATTTATATTTTTACGGGTATCCATTGGGGTATAAAAGATTTCAAAAACTTTCCATA
1 TTTTCAATCTTTTATATTCTTATGGGTATCC-GTGGGGTATAAAAGATTTCAAAAACTTTCCACA
* * * *
1677669 TCCTTCCGGGTATCCATTAAGGTACAAAATGA-TTTTTTCAAAACACAAATAATTATCAATTA
65 TCCTTCCAGGTATCCATTAAGGCACAAAATGATTTTTTTCAAAA-ACAAATAAATATCAATCA
* * ***
1677731 TTTTCAAGTCTTTTATATTCTTATGGGTATCCGTAGGGTATAAAAGATTTTAAAAACTTTTTGCA
1 TTTTCAA-TCTTTTATATTCTTATGGGTATCCGTGGGGTATAAAAGATTTCAAAAACTTTCCACA
* * * * *
1677796 TCTTTTCAGGTATCCATTAAGGCACGAAATGATTTTTTTCAAAAATAAATAAATATTAATCA
65 TCCTTCCAGGTATCCATTAAGGCACAAAATGATTTTTTTCAAAAACAAATAAATATCAATCA
* ** * *
1677858 TTTTTAATCTTTTATATTCCCATGGATATCCGTTGGGGTATTAAAGATTTCAAA
1 TTTTCAATCTTTTATATTCTTATGGGTATCCG-TGGGGTATAAAAGATTTCAAA
1677912 TTTTTCGTAT
Statistics
Matches: 151, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
126 22 0.15
127 97 0.64
128 32 0.21
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (126 bp):
TTTTCAATCTTTTATATTCTTATGGGTATCCGTGGGGTATAAAAGATTTCAAAAACTTTCCACAT
CCTTCCAGGTATCCATTAAGGCACAAAATGATTTTTTTCAAAAACAAATAAATATCAATCA
Found at i:1678633 original size:154 final size:154
Alignment explanation
Indices: 1678418--1679226 Score: 730
Period size: 154 Copynumber: 5.2 Consensus size: 154
1678408 ATCTCCGAGC
* *
1678418 ACTTTCACGTCGAAGGTATCCCCTAGGGGTATTTTCGTAATGTT-TTAGAACCAAGTCCTAGGTT
1 ACTTTTACGTCGAAGGTATCCCCTAGGGGCATTTTCGTAAT-TTCTTAGAACCAAGTCCTAGGTT
* * * * * * * *
1678482 ATCACTAGGATTGCTTTTATGCCGAATGTGGGTATTTAGGATAGGTTCA-CTCTTTTCTACTCTT
65 GTCACTAGGGTTGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCTAGTCTT
* *
1678546 TTTAAGTCCTTTAAGGTTGCCGAGGT
130 TTTAGGTCCTTTAGGGTT-CCGAGGT
* * * * * *
1678572 ACTTTTACATCGAAGGTATACCCATA-GGGCATTTTTGTAATTTCCTAAAACCAAGTGCTAGGTT
1 ACTTTTACGTCGAAGGTAT-CCCCTAGGGGCATTTTCGTAATTTCTTAGAACCAAGTCCTAGGTT
* * * *
1678636 GTCACTAGGTTTTCTTTTATGCTGAAGATGGGCATTTAGGATAGGTTCATCACCATTTCTAATCT
65 GTCACTAGGGTTGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATC-CCATTTCTAGTCT
* * *
1678701 TTTTAAGTCC-TTAGGGTTCCAAGAT
129 TTTTAGGTCCTTTAGGGTTCCGAGGT
* * * ** * * *
1678726 ACTTTCACGTCGAAGGTATCTCTTAAAGGCATTTTCGTAATTTTTTTTTAGAACCAACTCCCAGG
1 ACTTTTACGTCGAAGGTATCCCCTAGGGGCATTTTCGTAA---TTTCTTAGAACCAAGTCCTAGG
* * * * *
1678791 TCGTCACTA-GGTCTGCTTTTATGTTGAATGTGGGCATTTAGGATGGGTTCATCCCTTTTCTAGT
63 TTGTCACTAGGGT-TGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCTAGT
* * *
1678855 CTTTCTAGGTCTTTTAGGGTTGTC-AGGGT
127 CTTTTTAGGTCCTTTAGGGTT-CCGA-GGT
* * * ** * * * * **
1678884 ACTTTTAGGTTGAGGGTATACCTATAGGGGTATTTTCGTAATTTCTTAAAATCGAGTCCTAAATT
1 ACTTTTACGTCGAAGGTAT-CCCCTAGGGGCATTTTCGTAATTTCTTAGAACCAAGTCCTAGGTT
* * * *
1678949 GTCAC-CGGGTTCGCTTTTATGCTAAAGGTGGACATTTAGGATAGCTTCATCACCATTTCTAGTC
65 GTCACTAGGGTT-GCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATC-CCATTTCTAGTC
1679013 TTTTTAGGTCCTTTAGAGGTAT-CG-GGT
128 TTTTTAGGTCCTTTAG-GGT-TCCGAGGT
* * * * * * *
1679040 TCTTTTACATCGAAGGTATCCCCTAGGGGCATTTT-GTAATTTTTTAGAATCAACTCTTA-GTCG
1 ACTTTTACGTCGAAGGTATCCCCTAGGGGCATTTTCGTAATTTCTTAGAACCAAGTCCTAGGTTG
* *
1679103 TCAC-CGGGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCTA-TCCT
66 TCACTAGGGT-TGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCTAGT-CT
* *
1679166 TTTTAGGTCTTTTAGGGGTAT-TG-GGT
129 TTTTAGGTCCTTTA-GGGT-TCCGAGGT
*
1679192 ACTTTTACGTCGAAGGTATCCCCTAGGGGCGTTTT
1 ACTTTTACGTCGAAGGTATCCCCTAGGGGCATTTT
1679227 TATAATTTTT
Statistics
Matches: 533, Mismatches: 100, Indels: 46
0.78 0.15 0.07
Matches are distributed among these distances:
151 1 0.00
152 65 0.12
153 53 0.10
154 143 0.27
155 27 0.05
156 113 0.21
157 94 0.18
158 21 0.04
159 16 0.03
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.39
Consensus pattern (154 bp):
ACTTTTACGTCGAAGGTATCCCCTAGGGGCATTTTCGTAATTTCTTAGAACCAAGTCCTAGGTTG
TCACTAGGGTTGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCTAGTCTTT
TTAGGTCCTTTAGGGTTCCGAGGT
Found at i:1678985 original size:156 final size:151
Alignment explanation
Indices: 1678493--1679226 Score: 582
Period size: 156 Copynumber: 4.7 Consensus size: 151
1678483 TCACTAGGAT
* * * * * * * *
1678493 TGCTTTTATGCCGAATGTGGGTATTTAGGATAGGTTCA-CTCTTTTCTACTCTTTTTAAGTCCTT
1 TGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCTAGTCTTTTTAGGTCTTT
* *
1678557 TAAGGT-TGCCGAGGTACTTTTACATCGAAGGTATACCCATA-GGGCATTTTTGTAATTTCCTAA
66 TAGGGTAT--CG-GGTACTTTTACATCGAAGGTAT-CCCATAGGGGCA-TTTTGTAATTTCTTAA
* * ** * ** *
1678620 AACCAAGTGCTAGGTTGTCACTAGGTT
126 AATCAACT-CTAAATCGTCACCGGGTC
* * * * *
1678647 TTCTTTTATGCTGAAGATGGGCATTTAGGATAGGTTCATCACCATTTCTAATCTTTTTAAGTC-C
1 TGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATC-CCATTTCTAGTCTTTTTAGGTCTT
* * * * * * ** *
1678711 TTAGGGT-TCCAAGATACTTTCACGTCGAAGGTATCTCTTAAAGGCATTTTCGTAATTTTTTTTT
65 TTAGGGTAT-C-GGGTACTTTTACATCGAAGGTATCCCATAGGGGCATTTT-GTAA---TTTCTT
* * * ** **
1678775 AGAACCAACTCCCAGGTCGTCACTAGGTC
124 AAAATCAACT-CTAAATCGTCACCGGGTC
* * * * *
1678804 TGCTTTTATGTTGAATGTGGGCATTTAGGATGGGTTCATCCCTTTTCTAGTCTTTCTAGGTCTTT
1 TGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCTAGTCTTTTTAGGTCTTT
* ** * * * *
1678869 TAGGGTTGTCAGGGTACTTTTAGGTTGAGGGTATACCTATAGGGGTATTTTCGTAATTTCTTAAA
66 TAGGG-TATC-GGGTACTTTTACATCGAAGGTAT-CCCATAGGGGCATTTT-GTAATTTCTTAAA
* * *
1678934 ATCGAGTCCTAAATTGTCACCGGGT-
127 ATCAACT-CTAAATCGTCACCGGGTC
* * * *
1678959 TCGCTTTTATGCTAAAGGTGGACATTTAGGATAGCTTCATCACCATTTCTAGTCTTTTTAGGTCC
1 T-GCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATC-CCATTTCTAGTCTTTTTAGGTCT
* * * *
1679024 TTTAGAGGTATCGGGTTCTTTTACATCGAAGGTATCCCCTAGGGGCATTTTGTAATTTTTTAGAA
64 TTTAG-GGTATCGGGTACTTTTACATCGAAGGTATCCCATAGGGGCATTTTGTAATTTCTTAAAA
* *
1679089 TCAACTCTTAGTCGTCACCGGGTC
128 TCAACTCTAAATCGTCACCGGGTC
*
1679113 TGCTTTTATGCCGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCTA-TCCTTTTTAGGTCTT
1 TGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCTAGT-CTTTTTAGGTCTT
* * * *
1679177 TTAGGGGTATTGGGTACTTTTACGTCGAAGGTATCCCCTAGGGGCGTTTT
65 TTA-GGGTATCGGGTACTTTTACATCGAAGGTATCCCATAGGGGCATTTT
1679227 TATAATTTTT
Statistics
Matches: 470, Mismatches: 92, Indels: 38
0.78 0.15 0.06
Matches are distributed among these distances:
151 1 0.00
152 65 0.14
153 58 0.12
154 79 0.17
155 22 0.05
156 111 0.24
157 96 0.20
158 22 0.05
159 16 0.03
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (151 bp):
TGCTTTTATGCTGAAGGTGGGCATTTAGGATAGGTTCATCCCATTTCTAGTCTTTTTAGGTCTTT
TAGGGTATCGGGTACTTTTACATCGAAGGTATCCCATAGGGGCATTTTGTAATTTCTTAAAATCA
ACTCTAAATCGTCACCGGGTC
Found at i:1683239 original size:25 final size:26
Alignment explanation
Indices: 1683188--1683239 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
1683178 AGAGCCCTGG
*
1683188 AAAAATTCAAAAAATTTTTATTCTTT
1 AAAAATTCAAAAAATTTTAATTCTTT
*
1683214 AAAAA-TCATAAAATTCTTAATT-TTT
1 AAAAATTCAAAAAATT-TTAATTCTTT
1683239 A
1 A
1683240 GTTTTGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (26 bp):
AAAAATTCAAAAAATTTTAATTCTTT
Found at i:1684225 original size:163 final size:163
Alignment explanation
Indices: 1683972--1684562 Score: 630
Period size: 163 Copynumber: 3.6 Consensus size: 163
1683962 CCCTTTTTTG
* * ** *
1683972 AAAATATCATTACATACCTTAATGGAAACCCAAAAAGATATGAAAAGTTTTTGAAACCTTTTATA
1 AAAATATCATTTCGTACCTTAATGGAAACCCAAAAAGATACAAAAAGTTTTTGAAATCTTTTATA
* * * * *
1684037 CCTCTACGAAGCCCCATATGAATATAAAAGCTTAAAAAAATGATTAGAGTTTGTCTTC-ATTATG
66 CCCCTACGGAGCCCCATAGGAATATAAAAGATTAAAAAAATGATTA-AGTTTATCTTCAATTATG
* *
1684101 AAAGTGTTAATTTATTTTAATTTGTTT-TATTTCA
130 AAAGTATTAATTTATTTTAATTTATTTAT-TTTCA
* * *
1684135 AAAATATCATTTCGTATCTTAATGGAAGCCCGAAAAGATACAAAAAGTTTTTTGAAATCTTTTAT
1 AAAATATCATTTCGTACCTTAATGGAAACCCAAAAAGATACAAAAAG-TTTTTGAAATCTTTTAT
* * ** **
1684200 ACCCCTATGGA-CCCCATAGGAATATAAAA-AAT-AAAAAAT-ATTAAAGTTCCTC-TCGGTTAT
65 ACCCCTACGGAGCCCCATAGGAATATAAAAGATTAAAAAAATGATT-AAGTTTATCTTCAATTAT
** *
1684260 GAAAGTATTGGTTTAATTTT-ATTTATTTGTTTTCGA
129 GAAAGTATTAATTT-ATTTTAATTTATTTATTTTC-A
* * * * *
1684296 AAAATACCTTTTTGTACCGTAATGGAAACCCAAAAAGATACAAAACA-TTTTTGAAATCTTTTTT
1 AAAATATCATTTCGTACCTTAATGGAAACCCAAAAAGATACAAAA-AGTTTTTGAAATCTTTTAT
* * * * *
1684360 ACCCCTACAGAGCCTCATAGAAATATAAAAGATTAAAAAAATGATGAATATTTAT-TTCAATTAT
65 ACCCCTACGGAGCCCCATAGGAATATAAAAGATTAAAAAAATGATTAA-GTTTATCTTCAATTAT
* *
1684424 GAAAGTATTAATTTAATTTAATTTATTTATTTTTGA
129 GAAAGTATTAATTTATTTTAATTTATTTA-TTTTCA
* *
1684460 AAAATA-CTATTTCGTACCTTAATGGAAACCCAAAAAGATACGAAAAG-GTTTGAAATCTTTTAT
1 AAAATATC-ATTTCGTACCTTAATGGAAACCCAAAAAGATACAAAAAGTTTTTGAAATCTTTTAT
* * * *
1684523 ACACCTATGGATCTCCATAGGAATATAAAAGATTAAAAAA
65 ACCCCTACGGAGCCCCATAGGAATATAAAAGATTAAAAAA
1684563 TGGTTAATAT
Statistics
Matches: 353, Mismatches: 58, Indels: 34
0.79 0.13 0.08
Matches are distributed among these distances:
159 2 0.01
160 60 0.17
161 69 0.20
162 4 0.01
163 119 0.34
164 95 0.27
165 4 0.01
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (163 bp):
AAAATATCATTTCGTACCTTAATGGAAACCCAAAAAGATACAAAAAGTTTTTGAAATCTTTTATA
CCCCTACGGAGCCCCATAGGAATATAAAAGATTAAAAAAATGATTAAGTTTATCTTCAATTATGA
AAGTATTAATTTATTTTAATTTATTTATTTTCA
Found at i:1684450 original size:164 final size:158
Alignment explanation
Indices: 1683986--1684562 Score: 604
Period size: 164 Copynumber: 3.6 Consensus size: 158
1683976 TATCATTACA
* * * * *
1683986 TACCTTAATGGAAACCCAAAAAGATATGAAAAGTTTTTGAAACCTTTTATACCTCTACGAAGCCC
1 TACCTTAATGGAAACCCAAAAAGATA-CAAAAATTTTTGAAATCTTTTATACCCCTACGGA-CCC
* * * * * *
1684051 CATATGAATATAAAAGCTTAAAAAAATGATTAGAGTTTGTCTTCATTATGAAAGTGTTAATTTAT
64 CATAGGAATATAAAAGATTAAAAAAATGATTA-AATTTAT-TTCATTATGAAAGTATTAATTTAA
* *
1684116 TTTAATTTGTTTTATTTC-AAAAATATCATTTCG
127 TTTAATTTATTTT-TTTCGAAAAATA-CTTTTCG
* * * *
1684149 TATCTTAATGGAAGCCCGAAAAGATACAAAAAGTTTTTTGAAATCTTTTATACCCCTATGGACCC
1 TACCTTAATGGAAACCCAAAAAGATACAAAAA--TTTTTGAAATCTTTTATACCCCTACGGACCC
* ** * * **
1684214 CATAGGAATATAAAA-AAT-AAAAAAT-ATTAAAGTTCCTCTCGGTTATGAAAGTATTGGTTTAA
64 CATAGGAATATAAAAGATTAAAAAAATGATTAAA-TTTATTTC-ATTATGAAAGTATTAATTTAA
* *
1684276 TTTTATTTATTTGTTTTCGAAAAATACCTTTTTG
127 TTTAATTTATTT-TTTTCGAAAAATA-CTTTTCG
* * * *
1684310 TACCGTAATGGAAACCCAAAAAGATACAAAACATTTTTGAAATCTTTTTTACCCCTACAGAGCCT
1 TACCTTAATGGAAACCCAAAAAGATACAAAA-ATTTTTGAAATCTTTTATACCCCTACGGA-CCC
* *
1684375 CATAGAAATATAAAAGATTAAAAAAATGATGAATATTTATTTCAATTATGAAAGTATTAATTTAA
64 CATAGGAATATAAAAGATTAAAAAAATGATTAA-ATTTATTTC-ATTATGAAAGTATTAATTTAA
*
1684440 TTTAATTTATTTATTTTTGAAAAATACTATTTCG
127 TTTAATTTATTT-TTTTCGAAAAATACT-TTTCG
* ** * * *
1684474 TACCTTAATGGAAACCCAAAAAGATACGAAAAGGTTTGAAATCTTTTATACACCTATGGATCTCC
1 TACCTTAATGGAAACCCAAAAAGATACAAAAATTTTTGAAATCTTTTATACCCCTACGGA-CCCC
1684539 ATAGGAATATAAAAGATTAAAAAA
65 ATAGGAATATAAAAGATTAAAAAA
1684563 TGGTTAATAT
Statistics
Matches: 341, Mismatches: 60, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
159 3 0.01
160 62 0.18
161 63 0.18
162 8 0.02
163 97 0.28
164 107 0.31
165 1 0.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (158 bp):
TACCTTAATGGAAACCCAAAAAGATACAAAAATTTTTGAAATCTTTTATACCCCTACGGACCCCA
TAGGAATATAAAAGATTAAAAAAATGATTAAATTTATTTCATTATGAAAGTATTAATTTAATTTA
ATTTATTTTTTTCGAAAAATACTTTTCG
Found at i:1686307 original size:167 final size:164
Alignment explanation
Indices: 1685923--1686528 Score: 527
Period size: 166 Copynumber: 3.7 Consensus size: 164
1685913 AACTAAAATG
* * ** * * * * **
1685923 AATTTTTCAAAACTGAATTAATGGGAGTTCAATGAA-AATATTTTATGAATTCTAAAAATTTTAA
1 AATTTTTAAAAACTGATTTAATATGAATTAAAT-AATAATATTTGATGAATTTTAAAAATTAAAA
** * * ** ** * *
1685987 ATTGAGAAAAATCCTTCGAAAACCTTTGTGAAATAGAAAACTCGGT-TCTTTGGAAACATAG-AA
65 ATCAAGAAAAATCCTCCTAAAAAATTTACGAAGTAGAAAACTCCGTAT-TTTGG-AA-ATAGAAA
* *
1686050 ATTTCAAAGAAAAAATTC-AGAACTCATGAAAATAAACT
127 ATTTCAAAGAAAAAATTCAAAAACTCATGAAAATGAA-T
* * *
1686088 AATTTTT-CAAACATGTTTTAATATGAATCAAATAATAATATTTGATGAATTTTAAAAATTAAAA
1 AATTTTTAAAAAC-TGATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATTAAAA
*
1686152 ATCGAGAAAAATCCTCCCTAAAAAATTTACGAAGTAGAAAACTCCGTATTTTGGAAATAGGAAAA
65 ATCAAGAAAAATCCT-CCTAAAAAATTTACGAAGTAGAAAACTCCGTATTTTGGAAATA-GAAAA
* * *
1686217 TTTCAAGGAAAAAATTCAAAAACTCATGTAGATGAAT
128 TTTCAAAGAAAAAATTCAAAAACTCATGAAAATGAAT
* * *
1686254 AAATTTTTAAAAACTGATTTAAAATGAGTTAAATAATAATATTTTATGAATTTTAAAAATTAAAA
1 -AATTTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATTAAAA
* * * * * *
1686319 A-CTAAGAAAAAT-CTCCCCAAAAATATTTACGAAGTAGAAAAATTCGTA-TTT-AAAAAAAAAA
65 ATC-AAGAAAAATCCT-CCTAAAAA-ATTTACGAAGTAGAAAACTCCGTATTTTGGAAATAGAAA
* *
1686380 GGAGTTTCAAAG-AAAAATTCAAATA-TGTATGAAAATGAAT
127 --A-TTTCAAAGAAAAAATTCAAAAACT-CATGAAAATGAAT
* *
1686420 GAATTTTTGAAAAA-TTATTTAATATGAATTAAATAATAACATTTGATGAATTTTAAAAA-TAAA
1 -AATTTTT-AAAAACTGATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATTAAA
* * * *
1686483 AGACCAAGAAAAATCCTCCTAAAAGAATTTATGGAGAAGAAAACTC
64 A-ATCAAGAAAAATCCTCCTAAAA-AATTTACGAAGTAGAAAACTC
1686529 AATAATTTGA
Statistics
Matches: 365, Mismatches: 56, Indels: 39
0.79 0.12 0.08
Matches are distributed among these distances:
164 12 0.03
165 71 0.19
166 163 0.45
167 115 0.32
168 4 0.01
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (164 bp):
AATTTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATTAAAAA
TCAAGAAAAATCCTCCTAAAAAATTTACGAAGTAGAAAACTCCGTATTTTGGAAATAGAAAATTT
CAAAGAAAAAATTCAAAAACTCATGAAAATGAAT
Found at i:1687873 original size:13 final size:13
Alignment explanation
Indices: 1687855--1687880 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1687845 AATTTTTTTG
1687855 TGTATCGATACAT
1 TGTATCGATACAT
1687868 TGTATCGATACAT
1 TGTATCGATACAT
1687881 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1690831 original size:34 final size:35
Alignment explanation
Indices: 1690788--1690854 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
1690778 ATGTTGCAAT
** *
1690788 GTATCGATACATGAAAAAGA-TGTATCGATACAAC
1 GTATCGATACACAAAAAAAATTGTATCGATACAAC
1690822 GTATCGATACACAAAAAAAATTGTATCGATACA
1 GTATCGATACACAAAAAAAATTGTATCGATACA
1690855 TTAGCTTGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (35 bp):
GTATCGATACACAAAAAAAATTGTATCGATACAAC
Found at i:1693075 original size:21 final size:21
Alignment explanation
Indices: 1693042--1693086 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1693032 TTGCAAGTTG
*
1693042 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
1693064 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
1693084 AAA
1 AAA
1693087 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:1694706 original size:15 final size:15
Alignment explanation
Indices: 1694686--1694716 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1694676 TAAAAATGTC
*
1694686 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1694701 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1694716 C
1 C
1694717 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1696814 original size:13 final size:13
Alignment explanation
Indices: 1696796--1696821 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1696786 CATTTTTTCT
1696796 TTGTATCGATACA
1 TTGTATCGATACA
1696809 TTGTATCGATACA
1 TTGTATCGATACA
1696822 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1699385 original size:13 final size:13
Alignment explanation
Indices: 1699367--1699392 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1699357 TACAGCAAGT
1699367 ATGTATCGATACA
1 ATGTATCGATACA
1699380 ATGTATCGATACA
1 ATGTATCGATACA
1699393 CAAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1706277 original size:20 final size:22
Alignment explanation
Indices: 1706244--1706287 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 22
1706234 TGATTTCTCG
1706244 TGTGAATGTATCGATACA-ATT
1 TGTGAATGTATCGATACATATT
*
1706265 TGTG-ATGTTTCGATACATATT
1 TGTGAATGTATCGATACATATT
1706286 TG
1 TG
1706288 AAAATATAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.43
Consensus pattern (22 bp):
TGTGAATGTATCGATACATATT
Found at i:1706346 original size:21 final size:20
Alignment explanation
Indices: 1706321--1706373 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
1706311 TACAAGCCAA
**
1706321 TGTATCGATACAATTTTTTTG
1 TGTATCGATACAA-TACTTTG
1706342 TGTATCGATAC-ATACTTTG
1 TGTATCGATACAATACTTTG
1706361 TGTATCGATACAA
1 TGTATCGATACAA
1706374 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 16 0.55
20 2 0.07
21 11 0.38
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:1710048 original size:23 final size:24
Alignment explanation
Indices: 1709990--1710048 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 24
1709980 ATTTGAAATA
*
1709990 TCAAAATTCTTTAAATAATATTTT
1 TCAAAATTCATTAAATAATATTTT
* * *
1710014 TCAATCA-CCATTAAATCAT-TTTT
1 TCAA-AATTCATTAAATAATATTTT
1710037 TCAAAATTCATT
1 TCAAAATTCATT
1710049 TTATTTCATG
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
22 1 0.04
23 12 0.44
24 13 0.48
25 1 0.04
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (24 bp):
TCAAAATTCATTAAATAATATTTT
Found at i:1711015 original size:11 final size:11
Alignment explanation
Indices: 1711001--1711038 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
1710991 AGAAAAAGCG
1711001 AGAGAAAAAAA
1 AGAGAAAAAAA
1711012 AGAGAAAAAAA
1 AGAGAAAAAAA
*
1711023 AG-GAAAAAAG
1 AGAGAAAAAAA
1711033 AGAGAA
1 AGAGAA
1711039 TCTAAGAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 9 0.36
11 16 0.64
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (11 bp):
AGAGAAAAAAA
Found at i:1714454 original size:9 final size:9
Alignment explanation
Indices: 1714439--1714480 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
1714429 AGGAACAATC
1714439 ATTATTGTT
1 ATTATTGTT
*
1714448 GTTATTGTT
1 ATTATTGTT
*
1714457 ATTATTCTT
1 ATTATTGTT
1714466 ATTCA-TGTT
1 ATT-ATTGTT
1714475 ATTATT
1 ATTATT
1714481 ATTAGTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
8 1 0.04
9 25 0.93
10 1 0.04
ACGTcount: A:0.21, C:0.05, G:0.10, T:0.64
Consensus pattern (9 bp):
ATTATTGTT
Found at i:1717288 original size:70 final size:70
Alignment explanation
Indices: 1717175--1717316 Score: 284
Period size: 70 Copynumber: 2.0 Consensus size: 70
1717165 AAATCATTTC
1717175 CTCTCATACCGTAACTCAAATAACTCCTTTTCAGCTTGTTTATAACCCCAAAAATGTGTTAAACA
1 CTCTCATACCGTAACTCAAATAACTCCTTTTCAGCTTGTTTATAACCCCAAAAATGTGTTAAACA
1717240 AGCTG
66 AGCTG
1717245 CTCTCATACCGTAACTCAAATAACTCCTTTTCAGCTTGTTTATAACCCCAAAAATGTGTTAAACA
1 CTCTCATACCGTAACTCAAATAACTCCTTTTCAGCTTGTTTATAACCCCAAAAATGTGTTAAACA
1717310 AGCTG
66 AGCTG
1717315 CT
1 CT
1717317 TTATCTTTCC
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.32, C:0.26, G:0.10, T:0.32
Consensus pattern (70 bp):
CTCTCATACCGTAACTCAAATAACTCCTTTTCAGCTTGTTTATAACCCCAAAAATGTGTTAAACA
AGCTG
Found at i:1721208 original size:13 final size:13
Alignment explanation
Indices: 1721190--1721215 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1721180 TACACAAAGT
1721190 ATGTATCGATACA
1 ATGTATCGATACA
1721203 ATGTATCGATACA
1 ATGTATCGATACA
1721216 CAAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1724903 original size:13 final size:13
Alignment explanation
Indices: 1724885--1724909 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1724875 TTTTCCAGAT
1724885 TGTATCGATACAA
1 TGTATCGATACAA
1724898 TGTATCGATACA
1 TGTATCGATACA
1724910 TTGCTTTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1730296 original size:8 final size:9
Alignment explanation
Indices: 1730274--1730300 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
1730264 CGATGAATAA
1730274 ATTTTTTAT
1 ATTTTTTAT
1730283 ATTTTTTAT
1 ATTTTTTAT
1730292 ATTTTTTAT
1 ATTTTTTAT
1730301 GTGGGAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:1735790 original size:52 final size:52
Alignment explanation
Indices: 1735590--1735770 Score: 310
Period size: 52 Copynumber: 3.5 Consensus size: 52
1735580 CAAAATATGA
* * * *
1735590 AAATTTACCTGCAT-TAATCGATACATTTAATAGTGTATTGATACATCTGGGC
1 AAATTTGCCTGCATGT-ATCGATACATTTTATAATGTATCGATACATCTGGGC
1735642 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1735694 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1735746 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
1735771 AAGATTAGTG
Statistics
Matches: 124, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
52 123 0.99
53 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
Found at i:1735884 original size:13 final size:13
Alignment explanation
Indices: 1735866--1735890 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1735856 TAAAAAAATA
1735866 TGTATCGATACAT
1 TGTATCGATACAT
1735879 TGTATCGATACA
1 TGTATCGATACA
1735891 AGACTTTACG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1736694 original size:52 final size:51
Alignment explanation
Indices: 1736567--1736759 Score: 151
Period size: 52 Copynumber: 3.8 Consensus size: 51
1736557 GGTGCCAATA
* * * *
1736567 TGCTGATTC-AGGACCAGTGATATTGGGCTTAAAGATGTAAAGAATG-TCAATG
1 TGCTGATTCAAGG-CCAGCGACATTGGTCTTGAAGATG-AAAGAATGCT-AATG
* ** * *
1736619 TGCTGATTCACGGTTAGCAACATTAGTCTTGAAGATGAGAAGAATGCTAATG
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTGAAGATGA-AAGAATGCTAATG
* * * *
1736671 TGCTGATTCAAGGCCAGCGACATTGGGT-TTGAAGGTTAAAG-ATGCCAATA
1 TGCTGATTCAAGGCCAGCGACATT-GGTCTTGAAGATGAAAGAATGCTAATG
* * * * *
1736721 CGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAA
1 TGCTGATTCAAGGCCAGCGACATTGGTCTTGAAGATGAA
1736760 GGTGAGAAAA
Statistics
Matches: 111, Mismatches: 25, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
49 2 0.02
50 36 0.32
51 4 0.04
52 64 0.58
53 5 0.05
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.27
Consensus pattern (51 bp):
TGCTGATTCAAGGCCAGCGACATTGGTCTTGAAGATGAAAGAATGCTAATG
Found at i:1736834 original size:39 final size:39
Alignment explanation
Indices: 1736780--1736856 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
1736770 GTGATAAAGA
* *
1736780 TGCCAATATGCTGATTCACGGCCAACGATATTGGACTTG
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTG
* *
1736819 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
1 TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTT
1736857 AAAGACAAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (39 bp):
TGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTG
Found at i:1736994 original size:49 final size:46
Alignment explanation
Indices: 1736906--1737091 Score: 162
Period size: 49 Copynumber: 3.9 Consensus size: 46
1736896 ATTGGGCTTA
* * * *
1736906 TGCCAATGTGCTAATTCAAGGCCAGCAACATTGGTCTTAAAGATGCCGG
1 TGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAGAT---GG
* *
1736955 TGCCAATATGCTAATTCAAGGCCAACGATATCGGACTT-AA-A-GG
1 TGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAGATGG
* * * **
1736998 TGTCAATATTCTGATTCAAGGCCAGCGATATTGGGTTTTAAAGATAAAGG
1 TGCCAATATGCTAATTCAAGGCCAGCGATATT-GGACTTAAAGAT---GG
* *
1737048 TGCCAATATGCTAGTTCAAGGCTAGCGATATTGGACTTAGAAGA
1 TGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTA-AAGA
1737092 AGACGCCACC
Statistics
Matches: 109, Mismatches: 20, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
43 29 0.27
44 4 0.04
45 2 0.02
46 1 0.01
47 1 0.01
48 2 0.02
49 37 0.34
50 33 0.30
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (46 bp):
TGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAGATGG
Found at i:1737055 original size:93 final size:89
Alignment explanation
Indices: 1736772--1737087 Score: 350
Period size: 87 Copynumber: 3.5 Consensus size: 89
1736762 TGAGAAAAGT
* * *
1736772 GATAAAGATGCCAATATGCTGATTCACGGCCAACGATATTGGACTT-GTGCCAATGTGCTGATTC
1 GATAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAGTGCCAATGTGCTGATTC
*
1736836 AAGGCCAGCGACATTGGACTTAAA
66 AAGGCCAGCGACATTGGTCTTAAA
* * ** * * * *
1736860 GA-CAAGGTGCCAATACGCCGATTCAAAGCCAGCGATATTGGGCTTA-TGCCAATGTGCTAATTC
1 GATAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAGTGCCAATGTGCTGATTC
*
1736923 AAGGCCAGCAACATTGGTCTTAAA
66 AAGGCCAGCGACATTGGTCTTAAA
*** * * * *
1736947 GATGCCGGTGCCAATATGCTAATTCAAGGCCAACGATATCGGACTTAAAGGTGTCAATATTCTGA
1 GATAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGGACTT--A-GTGCCAATGTGCTGA
* *
1737012 TTCAAGGCCAGCGATATTGGGTTTTAAA
63 TTCAAGGCCAGCGACATT-GGTCTTAAA
* * *
1737040 GATAAAGGTGCCAATATGCTAGTTCAAGGCTAGCGATATTGGACTTAG
1 GATAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAG
1737088 AAGAAGACGC
Statistics
Matches: 186, Mismatches: 35, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
87 75 0.40
88 35 0.19
90 2 0.01
91 1 0.01
92 26 0.14
93 47 0.25
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.26
Consensus pattern (89 bp):
GATAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGGACTTAGTGCCAATGTGCTGATTC
AAGGCCAGCGACATTGGTCTTAAA
Found at i:1737166 original size:28 final size:29
Alignment explanation
Indices: 1737108--1737434 Score: 327
Period size: 28 Copynumber: 11.5 Consensus size: 29
1737098 CACCAACTTG
* *
1737108 TGTGGGCTTTTGAAAGGGTTG-CA-TCAACT
1 TGTGGGCTTTTGAAA-GGATGCCACT-GACT
* *
1737137 TGTGTGCTTTTG-AAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAAGGATGCCACTGACT
*
1737165 TGTGGGC-TTTGAAAGGATACCACTGACT
1 TGTGGGCTTTTGAAAGGATGCCACTGACT
*
1737193 TGTGGG--TTTGAAAGGGGTGCCACTGACT
1 TGTGGGCTTTTGAAA-GGATGCCACTGACT
*
1737221 TGTGCGCTTTTG-AA-GATTGCCACTGACT
1 TGTGGGCTTTTGAAAGGA-TGCCACTGACT
* * *
1737249 TGTGGGCTTTGGAAAAGATGCCACTAACT
1 TGTGGGCTTTTGAAAGGATGCCACTGACT
* *
1737278 TGTGGGCTTTTG-AAGGTTGCCACTGAGT
1 TGTGGGCTTTTGAAAGGATGCCACTGACT
* * *
1737306 TGTGGCCTTTGGAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAAGGATGCCACTGACT
* * *
1737335 TATGGGCTTTAGAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAAGGATGCCACTGACT
*
1737364 TGTGGCCTTTTG-AA-GATTGCCACTGACT
1 TGTGGGCTTTTGAAAGGA-TGCCACTGACT
* * *
1737392 TATGGGCTTTGGAAAAGATGCCACTGACT
1 TGTGGGCTTTTGAAAGGATGCCACTGACT
1737421 TGTGGGC-TTTGAAA
1 TGTGGGCTTTTGAAA
1737435 AGGTGAGGAA
Statistics
Matches: 252, Mismatches: 33, Indels: 27
0.81 0.11 0.09
Matches are distributed among these distances:
27 19 0.08
28 121 0.48
29 104 0.41
30 8 0.03
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (29 bp):
TGTGGGCTTTTGAAAGGATGCCACTGACT
Found at i:1737279 original size:57 final size:56
Alignment explanation
Indices: 1737154--1737436 Score: 324
Period size: 57 Copynumber: 5.0 Consensus size: 56
1737144 TTTTGAAGGT
* * *
1737154 TGCCACTGACTTGTGGGC-TTTGAAAGGATACCACTGACTTGTGGG-TTTGAAAGGGG
1 TGCCACTGACTTGTGGGCTTTTGAAA-GATGCCACTGACTTGTGGGCTTTGAAA-AGA
*
1737210 TGCCACTGACTTGTGCGCTTTTG-AAGATTGCCACTGACTTGTGGGCTTTGGAAAAGA
1 TGCCACTGACTTGTGGGCTTTTGAAAGA-TGCCACTGACTTGTGGGCTTT-GAAAAGA
* * * * *
1737267 TGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACTGAGTTGTGGCCTTTGGAAAAGA
1 TGCCACTGACTTGTGGGCTTTTGAAAGATGCCACTGACTTGTGGGCTTT-GAAAAGA
* * *
1737324 TGCCACTGACTTATGGGCTTTAGAAAAGATGCCACTGACTTGTGGCCTTTTG--AAGA
1 TGCCACTGACTTGTGGGCTTTTG-AAAGATGCCACTGACTTGTGGGC-TTTGAAAAGA
* *
1737380 TTGCCACTGACTTATGGGCTTTGGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAG
1 -TGCCACTGACTTGTGGGCTTTTG-AAAGATGCCACTGACTTGTGGGCTTTGAAAAG
1737437 GTGAGGAATG
Statistics
Matches: 199, Mismatches: 18, Indels: 18
0.85 0.08 0.08
Matches are distributed among these distances:
55 2 0.01
56 43 0.22
57 121 0.61
58 30 0.15
59 3 0.02
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (56 bp):
TGCCACTGACTTGTGGGCTTTTGAAAGATGCCACTGACTTGTGGGCTTTGAAAAGA
Found at i:1737353 original size:86 final size:85
Alignment explanation
Indices: 1737154--1737436 Score: 378
Period size: 86 Copynumber: 3.3 Consensus size: 85
1737144 TTTTGAAGGT
* * *
1737154 TGCCACTGACTTGTGGGCTTTGAAAGGATACCACTGACTTGTGGG--TTTGAAAGGGGTGCCACT
1 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTTG-AA-GGTTGCCACT
*
1737217 GACTTGT-GCGCTTTTG--AAGA
64 GACTTGTGGC-CTTTGGAAAAGA
*
1737237 TTGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACT
1 -TGCCACTGACTTGTGGGCTTT-GAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACT
*
1737302 GAGTTGTGGCCTTTGGAAAAGA
64 GACTTGTGGCCTTTGGAAAAGA
* * *
1737324 TGCCACTGACTTATGGGCTTTAGAAAAGATGCCACTGACTTGTGGCCTTTTGAAGATTGCCACTG
1 TGCCACTGACTTGTGGGCTTT-GAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTG
* *
1737389 ACTTATGGGCTTTGGAAAAGA
65 ACTTGTGGCCTTTGGAAAAGA
1737410 TGCCACTGACTTGTGGGCTTTGAAAAG
1 TGCCACTGACTTGTGGGCTTTGAAAAG
1737437 GTGAGGAATG
Statistics
Matches: 178, Mismatches: 15, Indels: 11
0.87 0.07 0.05
Matches are distributed among these distances:
84 21 0.12
85 47 0.26
86 102 0.57
87 8 0.04
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (85 bp):
TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGA
CTTGTGGCCTTTGGAAAAGA
Found at i:1738904 original size:13 final size:13
Alignment explanation
Indices: 1738886--1738937 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
1738876 TTTTTTTCTG
1738886 TTTTGTTTGTTTT
1 TTTTGTTTGTTTT
1738899 TTTTGTTTG---T
1 TTTTGTTTGTTTT
* *
1738909 TTTTCTTTATTTT
1 TTTTGTTTGTTTT
1738922 TTTTGTTTGTTTT
1 TTTTGTTTGTTTT
1738935 TTT
1 TTT
1738938 CTTCTTTCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
10 8 0.25
13 24 0.75
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.85
Consensus pattern (13 bp):
TTTTGTTTGTTTT
Found at i:1738912 original size:23 final size:23
Alignment explanation
Indices: 1738886--1738935 Score: 50
Period size: 23 Copynumber: 2.2 Consensus size: 23
1738876 TTTTTTTCTG
1738886 TTTTGTTTGTTTTT-TTTGTTTGT
1 TTTTGTTTGTTTTTCTTTGTTT-T
* *
1738909 TTTTCTTTATTTTT-TTTGTTTGT
1 TTTTGTTTGTTTTTCTTTGTTT-T
1738932 TTTT
1 TTTT
1738936 TTCTTCTTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (23 bp):
TTTTGTTTGTTTTTCTTTGTTTT
Found at i:1738946 original size:32 final size:31
Alignment explanation
Indices: 1738872--1738955 Score: 84
Period size: 32 Copynumber: 2.7 Consensus size: 31
1738862 ACCCTTTTTG
* * *
1738872 TTGTTT-TTTTTC-TGTTTTGTTTGTTTTTT
1 TTGTTTCTTTTTCTTATTTTTTTTGTTTGTT
*
1738901 TTGTTTGTTTTTCTTTATTTTTTTTGTTTGTT
1 TTGTTTCTTTTTC-TTATTTTTTTTGTTTGTT
*
1738933 TT-TTTCTTCTTTCTTCTTTTTTT
1 TTGTTTCTT-TTTCTTATTTTTTT
1738956 GCGGAGGACG
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
29 6 0.13
30 6 0.13
31 14 0.30
32 20 0.43
ACGTcount: A:0.01, C:0.07, G:0.10, T:0.82
Consensus pattern (31 bp):
TTGTTTCTTTTTCTTATTTTTTTTGTTTGTT
Found at i:1750110 original size:13 final size:13
Alignment explanation
Indices: 1750088--1750159 Score: 82
Period size: 13 Copynumber: 5.9 Consensus size: 13
1750078 CAAAGATCAG
1750088 TGTATCGATACAA
1 TGTATCGATACAA
*
1750101 TGTATTGATAC-A
1 TGTATCGATACAA
* *
1750113 TTTA-AG-T--AA
1 TGTATCGATACAA
1750122 TGTATCGATACAA
1 TGTATCGATACAA
1750135 TGTATCGATACAA
1 TGTATCGATACAA
1750148 TGTATCGATACA
1 TGTATCGATACA
1750160 TTTAAGTAAT
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
9 4 0.08
10 2 0.04
11 2 0.04
12 4 0.08
13 37 0.76
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1750125 original size:21 final size:21
Alignment explanation
Indices: 1750099--1750183 Score: 89
Period size: 21 Copynumber: 3.8 Consensus size: 21
1750089 GTATCGATAC
*
1750099 AATGTATTGATACATTTAAGT
1 AATGTATCGATACATTTAAGT
* *
1750120 AATGTATCGATACAATGTATCGAT
1 AATGTATCGATAC-ATTTA-AG-T
1750144 ACAATGTATCGATACATTTAAGT
1 --AATGTATCGATACATTTAAGT
*
1750167 AATGTATCGATAAATTT
1 AATGTATCGATACATTT
1750184 TCTTGGCAGT
Statistics
Matches: 53, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
21 28 0.53
22 4 0.08
23 2 0.04
24 2 0.04
25 4 0.08
26 13 0.25
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (21 bp):
AATGTATCGATACATTTAAGT
Found at i:1750158 original size:47 final size:47
Alignment explanation
Indices: 1750088--1750178 Score: 173
Period size: 47 Copynumber: 1.9 Consensus size: 47
1750078 CAAAGATCAG
*
1750088 TGTATCGATACAATGTATTGATACATTTAAGTAATGTATCGATACAA
1 TGTATCGATACAATGTATCGATACATTTAAGTAATGTATCGATACAA
1750135 TGTATCGATACAATGTATCGATACATTTAAGTAATGTATCGATA
1 TGTATCGATACAATGTATCGATACATTTAAGTAATGTATCGATA
1750179 AATTTTCTTG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (47 bp):
TGTATCGATACAATGTATCGATACATTTAAGTAATGTATCGATACAA
Found at i:1750236 original size:19 final size:19
Alignment explanation
Indices: 1750212--1750276 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
1750202 AAATATACAT
1750212 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
1750231 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
1750244 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
1750263 TGTATCGATACAAA
1 TGTATCGATACAAA
1750277 TCGTTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:1750247 original size:32 final size:32
Alignment explanation
Indices: 1750206--1750274 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
1750196 CTTCGAAAAT
1750206 ATACATTGTATCGATACAAAACTTATGTATCG
1 ATACATTGTATCGATACAAAACTTATGTATCG
*
1750238 ATACATTGTATCGATACAACACTTATGTATCG
1 ATACATTGTATCGATACAAAACTTATGTATCG
1750270 ATACA
1 ATACA
1750275 AATCGTTGAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (32 bp):
ATACATTGTATCGATACAAAACTTATGTATCG
Found at i:1750249 original size:13 final size:13
Alignment explanation
Indices: 1750231--1750255 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1750221 ACAAAACTTA
1750231 TGTATCGATACAT
1 TGTATCGATACAT
1750244 TGTATCGATACA
1 TGTATCGATACA
1750256 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1750682 original size:52 final size:50
Alignment explanation
Indices: 1750604--1750887 Score: 242
Period size: 43 Copynumber: 5.9 Consensus size: 50
1750594 CATTGGGTTT
* *
1750604 AAAGGTGCCAATGTGCTGAGAT-AAGGCCAGCGACATTGGTCTTAAAGATGAC
1 AAAGGTGCCAATATGCTGA-TTCAAGGCCAGCGACATTGGTCTT-AA-ATGAC
* * * *
1750656 AAAGGCGCCAATATACTGATTCAAGGCCAGCGATATTGGAC-T---T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAATGAC
*
1750699 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-ATGAC
* * * * *
1750751 AAAGGCGCCAATATACTGATCCAAGGCCAGCGATATTGG-ATT---T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAATGAC
* *
1750794 AAAGGTGCCAATGTGCTGATTCAACGCCAGCGACATTGGTCTTAAA-GAC
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAATGAC
* * * *
1750843 -AAGGTGCCAATATGCTGACTCAAGGCTAGCGATATTGGTTTTAAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAA
1750888 GGTGCCACAA
Statistics
Matches: 185, Mismatches: 30, Indels: 38
0.73 0.12 0.15
Matches are distributed among these distances:
43 69 0.37
44 3 0.02
46 2 0.01
48 39 0.21
49 1 0.01
51 4 0.02
52 67 0.36
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (50 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAATGAC
Found at i:1750739 original size:95 final size:95
Alignment explanation
Indices: 1750576--1750894 Score: 495
Period size: 95 Copynumber: 3.4 Consensus size: 95
1750566 GTGTCTACAG
* * *
1750576 CTGATTCAAGGCCAGCGACATTGGGTTTAAAGGTGCCAATGTGCTGAGAT-AAGGCCAGCGACAT
1 CTGATTCAAGGCCAGCGATATTGGATTTAAAGGTGCCAATGTGCTGA-TTCAAGGCCAGCGACAT
1750640 TGGTCTTAAAGATGACAAAGGCGCCAATATA
65 TGGTCTTAAAGATGACAAAGGCGCCAATATA
*
1750671 CTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATT
1 CTGATTCAAGGCCAGCGATATTGGATTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATT
1750736 GGTCTTAAAGATGACAAAGGCGCCAATATA
66 GGTCTTAAAGATGACAAAGGCGCCAATATA
* *
1750766 CTGATCCAAGGCCAGCGATATTGGATTTAAAGGTGCCAATGTGCTGATTCAACGCCAGCGACATT
1 CTGATTCAAGGCCAGCGATATTGGATTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATT
* *
1750831 GGTCTT-AA-A-GAC-AAGGTGCCAATATG
66 GGTCTTAAAGATGACAAAGGCGCCAATATA
* * *
1750857 CTGACTCAAGGCTAGCGATATTGGTTTTAAAGGTGCCA
1 CTGATTCAAGGCCAGCGATATTGGATTTAAAGGTGCCA
1750895 CAAAGTTGTG
Statistics
Matches: 210, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
91 46 0.22
92 3 0.01
93 1 0.00
94 3 0.01
95 157 0.75
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (95 bp):
CTGATTCAAGGCCAGCGATATTGGATTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATT
GGTCTTAAAGATGACAAAGGCGCCAATATA
Found at i:1751001 original size:33 final size:32
Alignment explanation
Indices: 1750898--1751006 Score: 137
Period size: 32 Copynumber: 3.4 Consensus size: 32
1750888 GGTGCCACAA
* ***
1750898 AGTTGTGGACTTAAAAAGAAAAGGCACCACGG
1 AGTTGTGGGCTTAAAAAGAAAAGATGCCACGG
* *
1750930 AGTTGTGGGCTTAAAAAGAAATGGTGCCACGG
1 AGTTGTGGGCTTAAAAAGAAAAGATGCCACGG
*
1750962 AGTTGTGGGCTTAAAAGGAAAAAGATGCCACGG
1 AGTTGTGGGCTTAAAAAG-AAAAGATGCCACGG
*
1750995 ACTTGTGGGCTT
1 AGTTGTGGGCTT
1751007 TTGAAGGTTG
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
32 45 0.66
33 23 0.34
ACGTcount: A:0.33, C:0.14, G:0.32, T:0.21
Consensus pattern (32 bp):
AGTTGTGGGCTTAAAAAGAAAAGATGCCACGG
Found at i:1751110 original size:29 final size:29
Alignment explanation
Indices: 1750979--1751150 Score: 183
Period size: 29 Copynumber: 6.0 Consensus size: 29
1750969 GGCTTAAAAG
*
1750979 GAAAAAGATGCCACGGACTTGTGGGCTTTT
1 GAAAAAGATGCCACTGACTTGTGGGC-TTT
* *
1751009 G--AAGGTTGCCACTGA-TTGGTGGGCTTT
1 GAAAAAGATGCCACTGACTT-GTGGGCTTT
* * * * *
1751036 GAAAAATGGTGACACTGATTTATGGGCTTC
1 GAAAAA-GATGCCACTGACTTGTGGGCTTT
* * *
1751066 G--AAGGTTGCCACTGACTTATGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
1751093 GAAAAAGATGCCACTGACTTGTGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
1751122 GAAAAAGATGCCACTGACTTGTGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTT
1751151 TGAAGGGTGA
Statistics
Matches: 119, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
27 26 0.22
28 19 0.16
29 54 0.45
30 18 0.15
31 2 0.02
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (29 bp):
GAAAAAGATGCCACTGACTTGTGGGCTTT
Found at i:1751147 original size:58 final size:56
Alignment explanation
Indices: 1750979--1751150 Score: 211
Period size: 58 Copynumber: 3.0 Consensus size: 56
1750969 GGCTTAAAAG
*
1750979 GAAAAAGATGCCACGGACTTGTGGGCTTTTGAAGGTTGCCACTGA-TTGGTGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGC-TTTGAAGGTTGCCACTGACTT-GTGGGCTTT
* * * * * *
1751036 GAAAAATGGTGACACTGATTTATGGGCTTCGAAGGTTGCCACTGACTTATGGGCTTT
1 GAAAAA-GATGCCACTGACTTGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTT
* *
1751093 GAAAAAGATGCCACTGACTTGTGGGCTTTGAAAAAGATGCCACTGACTTGTGGGCTTT
1 GAAAAAGATGCCACTGACTTGTGGGCTTTG--AAGGTTGCCACTGACTTGTGGGCTTT
1751151 TGAAGGGTGA
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
56 19 0.20
57 37 0.39
58 40 0.42
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (56 bp):
GAAAAAGATGCCACTGACTTGTGGGCTTTGAAGGTTGCCACTGACTTGTGGGCTTT
Found at i:1752596 original size:1 final size:1
Alignment explanation
Indices: 1752592--1752674 Score: 58
Period size: 1 Copynumber: 83.0 Consensus size: 1
1752582 TTTGTTGTTG
* * * * * * * * *
1752592 TTTTTTTGTTTGTTTGTTTGTTTTTTTTTGTTTTTTTTTTATTTTTTTTCTTCTTTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
1752657 GTTTGTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTT
1752675 GGAGGATGCC
Statistics
Matches: 58, Mismatches: 24, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 58 1.00
ACGTcount: A:0.01, C:0.02, G:0.11, T:0.86
Consensus pattern (1 bp):
T
Found at i:1752602 original size:8 final size:8
Alignment explanation
Indices: 1752589--1752674 Score: 74
Period size: 8 Copynumber: 11.0 Consensus size: 8
1752579 CTTTTTGTTG
1752589 TTGTTTTT
1 TTGTTTTT
*
1752597 TTGTTTGT
1 TTGTTTTT
*
1752605 TTG-TTTG
1 TTGTTTTT
1752612 TT-TTTTT
1 TTGTTTTT
1752619 TTGTTTTT
1 TTGTTTTT
1752627 TT-TTTATT
1 TTGTTT-TT
*
1752635 TT-TTTTC
1 TTGTTTTT
*
1752642 TTCTTTTT
1 TTGTTTTT
1752650 TTGTTTTGT
1 TTGTTTT-T
1752659 TTGTTTGTT
1 TTGTTT-TT
1752668 TT-TTTTT
1 TTGTTTTT
1752675 GGAGGATGCC
Statistics
Matches: 65, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
7 17 0.26
8 37 0.57
9 10 0.15
10 1 0.02
ACGTcount: A:0.01, C:0.02, G:0.12, T:0.85
Consensus pattern (8 bp):
TTGTTTTT
Found at i:1752617 original size:33 final size:31
Alignment explanation
Indices: 1752580--1752675 Score: 95
Period size: 33 Copynumber: 3.0 Consensus size: 31
1752570 ATCCGGACCC
1752580 TTTTTGTTGTTGTTTTTTTGTTTGTTTGTTTGT
1 TTTTTGTTGTTGTTTTTTTGTTT-TTT-TTTGT
* * * *
1752613 TTTTTTTTGTTTTTTTTTTATTTTTTTTCTTCTT
1 TTTTTGTTGTTGTTTTTTT-GTTTTTTT-TT-GT
*
1752647 TTTTTGTT-TTGTTTGTTTGTTTTTTTTTG
1 TTTTTGTTGTTGTTTTTTTGTTTTTTTTTG
1752676 GAGGATGCCT
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
31 2 0.04
32 8 0.16
33 30 0.59
34 11 0.22
ACGTcount: A:0.01, C:0.02, G:0.14, T:0.83
Consensus pattern (31 bp):
TTTTTGTTGTTGTTTTTTTGTTTTTTTTTGT
Found at i:1769565 original size:15 final size:15
Alignment explanation
Indices: 1769545--1769579 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
1769535 ATTAAATAAT
1769545 AAAACCAGTGTCACC
1 AAAACCAGTGTCACC
1769560 AAAACCAGTGTCACC
1 AAAACCAGTGTCACC
1769575 AAAAC
1 AAAAC
1769580 TTGAGGCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.46, C:0.31, G:0.11, T:0.11
Consensus pattern (15 bp):
AAAACCAGTGTCACC
Found at i:1770739 original size:25 final size:25
Alignment explanation
Indices: 1770705--1770753 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
1770695 TCTTTTTAAC
*
1770705 TTGTTTAGAAAGATACAAGTTTGAT
1 TTGTTTAGAAAAATACAAGTTTGAT
1770730 TTGTTTAGAAAAATACAAGTTTGA
1 TTGTTTAGAAAAATACAAGTTTGA
1770754 CCCTTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.18, T:0.39
Consensus pattern (25 bp):
TTGTTTAGAAAAATACAAGTTTGAT
Found at i:1771116 original size:53 final size:53
Alignment explanation
Indices: 1771017--1771118 Score: 125
Period size: 53 Copynumber: 1.9 Consensus size: 53
1771007 AATCTATTAG
** * * *
1771017 CTACATTAGGCTTTCTCATCTAGGTGCCAATTTTGTTGGCATGAATCTACCAA
1 CTACATTAGGCTTTCTCATCTAAATGCCAATTTTGCTGACACGAATCTACCAA
* *
1771070 CTACATTAGGTTTTTTCATCTAAATGCCAATTTTGCT-ACAACGAATCTA
1 CTACATTAGGCTTTCTCATCTAAATGCCAATTTTGCTGAC-ACGAATCTA
1771119 ACAATTATGT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
52 1 0.02
53 40 0.98
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (53 bp):
CTACATTAGGCTTTCTCATCTAAATGCCAATTTTGCTGACACGAATCTACCAA
Found at i:1772020 original size:32 final size:33
Alignment explanation
Indices: 1771978--1772041 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
1771968 AAATTTGCTT
* *
1771978 TGTATAGATACCAAG-ATCATGTATCGATACTG
1 TGTATAGATACAAAGCAACATGTATCGATACTG
* *
1772010 TGTATCGATACAAAGCAACATGTTTCGATACT
1 TGTATAGATACAAAGCAACATGTATCGATACT
1772042 TCTGGGCCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (33 bp):
TGTATAGATACAAAGCAACATGTATCGATACTG
Found at i:1778790 original size:13 final size:13
Alignment explanation
Indices: 1778772--1778798 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1778762 ACATTATGCT
1778772 TTGTATCGATACA
1 TTGTATCGATACA
1778785 TTGTATCGATACA
1 TTGTATCGATACA
1778798 T
1 T
1778799 GATGATTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1778795 original size:33 final size:33
Alignment explanation
Indices: 1778753--1778818 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
1778743 CACACCCTGA
* *
1778753 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATGATGATTTGTATCGATACAT
1778786 TGTATCGATACATGATGATTTGTATCGATACAT
1 TGTATCGATACATGATGATTTGTATCGATACAT
1778819 AGCTTGTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACATGATGATTTGTATCGATACAT
Found at i:1786257 original size:52 final size:52
Alignment explanation
Indices: 1786187--1786307 Score: 208
Period size: 52 Copynumber: 2.3 Consensus size: 52
1786177 GAAAATTTAT
* *
1786187 CTGCATGTATCGATACA-TTTAGTAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTTA-TAATATATCGATACATCTGGGCAAATTTGC
1786239 CTGCATGTATCGATACATTTTATAATATATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTTATAATATATCGATACATCTGGGCAAATTTGC
1786291 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
1786308 AAGATCAGTG
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
52 62 0.94
53 4 0.06
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTTATAATATATCGATACATCTGGGCAAATTTGC
Found at i:1786322 original size:52 final size:52
Alignment explanation
Indices: 1786187--1786327 Score: 205
Period size: 52 Copynumber: 2.7 Consensus size: 52
1786177 GAAAATTTAT
1786187 CTGCATGTATCGATACATTTAG-TAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAGATAGTGTATCGATACATCTGGGCAAATTTGC
** * *
1786239 CTGCATGTATCGATACATTTTATAATATATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTAGATAGTGTATCGATACATCTGGGCAAATTTGC
*
1786291 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTAGAT-AGTGTATCGATACA
1786328 ATGTATCGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 4 0.05
52 74 0.95
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (52 bp):
CTGCATGTATCGATACATTAGATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:1786334 original size:13 final size:13
Alignment explanation
Indices: 1786316--1786340 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1786306 CAAAGATCAG
1786316 TGTATCGATACAA
1 TGTATCGATACAA
1786329 TGTATCGATACA
1 TGTATCGATACA
1786341 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1786422 original size:33 final size:33
Alignment explanation
Indices: 1786380--1786449 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
1786370 GGCAGTAGCT
1786380 TACATTGTATCGATACAAAAAAATATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
* ***
1786413 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
1786446 TACA
1 TACA
1786450 AATCGTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (33 bp):
TACATTGTATCGATACAAAAAAATATGTATCGA
Found at i:1786423 original size:13 final size:13
Alignment explanation
Indices: 1786405--1786429 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1786395 CAAAAAAATA
1786405 TGTATCGATACAT
1 TGTATCGATACAT
1786418 TGTATCGATACA
1 TGTATCGATACA
1786430 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1787398 original size:56 final size:53
Alignment explanation
Indices: 1787314--1787616 Score: 301
Period size: 49 Copynumber: 5.9 Consensus size: 53
1787304 GAAAAGTGAT
* * * * * *
1787314 AAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGATGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGA-G-A
* * * *
1787369 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG-GA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGA
*
1787422 AAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT--G-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGA
* * *
1787472 -AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT----
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGA
* *
1787520 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATA-TGGACTTAATG--GTG-
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGA
* * * *
1787569 CAA-GTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT
1787617 AAAAGTGCTG
Statistics
Matches: 212, Mismatches: 28, Indels: 20
0.82 0.11 0.08
Matches are distributed among these distances:
48 38 0.18
49 87 0.41
51 1 0.00
52 39 0.18
53 6 0.03
54 1 0.00
55 4 0.02
56 36 0.17
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (53 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGA
Found at i:1787495 original size:49 final size:50
Alignment explanation
Indices: 1787369--1787621 Score: 334
Period size: 49 Copynumber: 5.1 Consensus size: 50
1787359 AGATGATGAA
* *
1787369 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGG
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G
* * *
1787421 AAAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG
1 -AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
*
1787472 -AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * * *
1787520 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATA-TGGACTTAATGGTG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
* * *
1787569 CAA-GTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATA
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
1787618 AAAG
1 AAAG
1787622 TGCTGTCGCA
Statistics
Matches: 174, Mismatches: 22, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
48 39 0.22
49 90 0.52
51 1 0.01
52 39 0.22
53 5 0.03
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (50 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:1787597 original size:97 final size:98
Alignment explanation
Indices: 1787311--1787624 Score: 398
Period size: 97 Copynumber: 3.1 Consensus size: 98
1787301 TGAGAAAAGT
* * * * * *
1787311 GATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGATGAAAAAGGAT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-GATG---AAGG-T
* * *
1787376 GTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
59 GCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
*
1787416 GATGGAAAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCA
1 GAT---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCA
1787481 ATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
63 ATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
* *
1787517 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATA-TGGACTTAATGGTGCAA-GTGCCAAT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AAGGTGCCAAT
1787580 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
65 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
*
1787614 GATAAAAGTGC
1 GATAAAGGTGC
1787625 TGTCGCAACG
Statistics
Matches: 191, Mismatches: 14, Indels: 16
0.86 0.06 0.07
Matches are distributed among these distances:
97 64 0.34
98 36 0.19
101 41 0.21
102 4 0.02
105 7 0.04
106 1 0.01
107 2 0.01
108 36 0.19
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (98 bp):
GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATG
TGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
Found at i:1790263 original size:14 final size:12
Alignment explanation
Indices: 1790236--1790278 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
1790226 ATTTCATATT
1790236 TTTTTTTCTTTC
1 TTTTTTTCTTTC
1790248 TTTTTTTC-TTC
1 TTTTTTTCTTTC
*
1790259 ATCTTCTTTCTTTC
1 -T-TTTTTTCTTTC
1790273 TTTTTT
1 TTTTTT
1790279 ACCTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 3 0.12
12 13 0.50
13 7 0.27
14 3 0.12
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTTCTTTC
Found at i:1791485 original size:45 final size:48
Alignment explanation
Indices: 1791384--1791489 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 48
1791374 AATGTGCCAT
* *
1791384 TTCAAGGTCAGCGACATCGGGCTAAGGGAAAAGTGGACCAATGTGCTGA
1 TTCAAGGCCAGCGACATCGGGCTAA-GGAAAAGTGGACCAATATGCTGA
* * * *
1791433 CTCAAGGCCAGCGACATTGGGCTTA-GAAAGGT-G-CCAATATGCTGA
1 TTCAAGGCCAGCGACATCGGGCTAAGGAAAAGTGGACCAATATGCTGA
1791478 TTCAAGGCCAGC
1 TTCAAGGCCAGC
1791490 AATATCGGAC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
45 22 0.44
46 1 0.02
47 6 0.12
49 21 0.42
ACGTcount: A:0.29, C:0.22, G:0.30, T:0.19
Consensus pattern (48 bp):
TTCAAGGCCAGCGACATCGGGCTAAGGAAAAGTGGACCAATATGCTGA
Found at i:1791578 original size:32 final size:32
Alignment explanation
Indices: 1791522--1792505 Score: 1336
Period size: 32 Copynumber: 31.8 Consensus size: 32
1791512 AAAATGGTGA
* ** **
1791522 TTTGAAAAGGGTTGCCACTAACTTGCATGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
1791554 TTTTAAATGGGTTGCCCCCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
1791586 TTTGAAAAGGGTCGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1791618 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1791650 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
1791682 TTTGAAATGGGTTGCCACCGACTTATGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1791714 TTTGAAATGGG-TGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1791745 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
1791777 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1791809 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1791841 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * **
1791873 TTTGGAAT--GATGCCACTAAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
1791901 TTTGAAATGGATTGCCACCGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
1791931 TTTGAAA--GGATGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
1791959 TTTGAAA--GGATGCCACCAACTTGTGTGGAC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
1791989 TTTGAAA--AGATGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1792017 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1792049 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
1792081 TTTGGAATGGGTTGCCACCGACTTATGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1792113 TTTGAAATGGG-TGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1792144 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
1792176 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1792208 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1792240 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * **
1792272 TTTGGAAT--GATGCCACTAAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
1792300 TTTGAAATGGATTGCCACCGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
1792330 TTTGAAA--GGATGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
1792358 TTTGAAA--GGATGCCACCAACTTGTGTGGAC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
1792388 TTTGAAA--AGATGCCACTGAC-T-TGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1792416 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1792448 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
1792480 TTTGGAATGGG-TGCCACAGAGTTGTG
1 TTTGAAATGGGTTGCCACCGACTTGTG
1792506 GATTTAAAAG
Statistics
Matches: 864, Mismatches: 70, Indels: 37
0.89 0.07 0.04
Matches are distributed among these distances:
28 126 0.15
29 6 0.01
30 130 0.15
31 75 0.09
32 527 0.61
ACGTcount: A:0.18, C:0.19, G:0.33, T:0.30
Consensus pattern (32 bp):
TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:1792349 original size:399 final size:398
Alignment explanation
Indices: 1791611--1792496 Score: 1738
Period size: 399 Copynumber: 2.2 Consensus size: 398
1791601 CACCGACTTG
1791611 TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGT
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGT
*
1791676 GTGGGCTTTGAAATGGGTTGCCACCGACTTATGTGGGCTTTGAAATGGGTGCCACCGACTTGTGT
66 GTGGGCTTTGGAATGGGTTGCCACCGACTTATGTGGGCTTTGAAATGGGTGCCACCGACTTGTGT
1791741 GGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGGAATGGGTTGCCACCGACTTGTGTG
131 GGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGGAATGGGTTGCCACCGACTTGTGTG
1791806 GGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGG
196 GGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAAT-GGTTGCCACCGACTTGTGTGG
1791871 GCTTTGGAATGATGCCACTAACTTGTGGGCTTTGAAATGGATTGCCACCGACTTGTGGGCTTTGA
260 GCTTTGGAATGATGCCACTAACTTGTGGGCTTTGAAATGGATTGCCACCGACTTGTGGGCTTTGA
1791936 AAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACCAACTTGTGTGGACTTTGAAAAGATG
325 AAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACCAACTTGTGTGGACTTTGAAAAGATG
1792001 CCACTGACT
390 CCACTGACT
1792010 TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGT
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGT
1792075 GTGGGCTTTGGAATGGGTTGCCACCGACTTATGTGGGCTTTGAAATGGGTGCCACCGACTTGTGT
66 GTGGGCTTTGGAATGGGTTGCCACCGACTTATGTGGGCTTTGAAATGGGTGCCACCGACTTGTGT
1792140 GGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGGAATGGGTTGCCACCGACTTGTGTG
131 GGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGGAATGGGTTGCCACCGACTTGTGTG
1792205 GGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGG
196 GGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAAT-GGTTGCCACCGACTTGTGTGG
1792270 GCTTTGGAATGATGCCACTAACTTGTGGGCTTTGAAATGGATTGCCACCGACTTGTGGGCTTTGA
260 GCTTTGGAATGATGCCACTAACTTGTGGGCTTTGAAATGGATTGCCACCGACTTGTGGGCTTTGA
1792335 AAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACCAACTTGTGTGGACTTTGAAAAGATG
325 AAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACCAACTTGTGTGGACTTTGAAAAGATG
1792400 CCACTGACT
390 CCACTGACT
1792409 TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGT
1 TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGT
1792474 GTGGGCTTTGGAATGGG-TGCCAC
66 GTGGGCTTTGGAATGGGTTGCCAC
1792497 AGAGTTGTGG
Statistics
Matches: 486, Mismatches: 1, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
398 6 0.01
399 480 0.99
ACGTcount: A:0.18, C:0.19, G:0.33, T:0.30
Consensus pattern (398 bp):
TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGT
GTGGGCTTTGGAATGGGTTGCCACCGACTTATGTGGGCTTTGAAATGGGTGCCACCGACTTGTGT
GGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGGAATGGGTTGCCACCGACTTGTGTG
GGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGTTGCCACCGACTTGTGTGGG
CTTTGGAATGATGCCACTAACTTGTGGGCTTTGAAATGGATTGCCACCGACTTGTGGGCTTTGAA
AGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACCAACTTGTGTGGACTTTGAAAAGATGC
CACTGACT
Found at i:1792522 original size:27 final size:27
Alignment explanation
Indices: 1792488--1793171 Score: 1181
Period size: 27 Copynumber: 25.0 Consensus size: 27
1792478 GCTTTGGAAT
* *
1792488 GGGTGCCACAGAGTTGTGGATTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
1792515 GGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1792542 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1792569 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1792596 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1792623 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
1792651 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
1792678 GAGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1792705 GGGTGCCACGGAGTTGTGGAGC-TAAAA
1 GGGTGCCACGGAGTTGTGGA-CTTAAAA
*
1792732 GGGTGCCACGGAGTTGTGAACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1792759 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
1792787 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1792814 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
1792841 GGGATGCCACGGAGTTGTGAACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
1792869 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
1792897 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1792924 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1792951 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
* *
1792979 GGATGCCACGGAGCTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1793006 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
1793034 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
1793061 GGGGGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1793088 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
*
1793116 GGATGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
1793143 GGGTGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
1793171 G
1 G
1793172 AAAATGCCAC
Statistics
Matches: 628, Mismatches: 20, Indels: 17
0.94 0.03 0.03
Matches are distributed among these distances:
26 1 0.00
27 437 0.70
28 190 0.30
ACGTcount: A:0.28, C:0.15, G:0.36, T:0.22
Consensus pattern (27 bp):
GGGTGCCACGGAGTTGTGGACTTAAAA
Done.