Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold53
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4419549
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 41486 characters in sequence are not A, C, G, or T
File 14 of 28
Found at i:2039794 original size:20 final size:19
Alignment explanation
Indices: 2039760--2039837 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 19
2039750 GTAAAAAGAT
*
2039760 AAAATGTATCGATACATTG
1 AAAATGTATCAATACATTG
* *
2039779 AAGAATGTGTCAATACATTC
1 AA-AATGTATCAATACATTG
* *
2039799 ATACATGTATCCATACATTG
1 A-AAATGTATCAATACATTG
*
2039819 AAAAATGTATCGATACATT
1 -AAAATGTATCAATACATT
2039838 TAGGTAAAAG
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
19 2 0.04
20 43 0.91
21 2 0.04
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (19 bp):
AAAATGTATCAATACATTG
Found at i:2041043 original size:32 final size:31
Alignment explanation
Indices: 2040954--2041105 Score: 143
Period size: 32 Copynumber: 4.8 Consensus size: 31
2040944 AAAGTGGTGA
* *
2040954 TTTGAAAAGGGTTGCCATCGAATTGTGTGGGC
1 TTTGAAAAGAGTTGCCA-CGACTTGTGTGGGC
* * * *
2040986 TTTAAAAAAAAGGTGCCACTAACTTGTGTGGGC
1 TTT-GAAAAGAGTTGCCAC-GACTTGTGTGGGC
2041019 TTTGAAAAGAGTTGCCATCGACTTGTGTGGGC
1 TTTGAAAAGAGTTGCCA-CGACTTGTGTGGGC
*
2041051 TTTG-AAAG-GGTGCCACCGAC-T-TGTGGGC
1 TTTGAAAAGAGTTGCCA-CGACTTGTGTGGGC
2041079 TTTGAAAA-AGTATGCCACTGACTTGTG
1 TTTGAAAAGAGT-TGCCAC-GACTTGTG
2041106 GGATTTGAAA
Statistics
Matches: 98, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
28 11 0.11
29 6 0.06
30 18 0.18
31 5 0.05
32 33 0.34
33 25 0.26
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (31 bp):
TTTGAAAAGAGTTGCCACGACTTGTGTGGGC
Found at i:2041084 original size:28 final size:28
Alignment explanation
Indices: 2040994--2042711 Score: 1534
Period size: 28 Copynumber: 60.2 Consensus size: 28
2040984 GCTTTAAAAA
*
2040994 AAAGG-TGCCACTAACTTGTGTGGGCTTTG
1 AAAGGATGCCACTGAC-T-TGTGGGCTTTG
*
2041023 AAAAGAGTTGCCA-TCGACTTGTGTGGGCTTTG
1 -AAAG-GATGCCACT-GAC-T-TGTGGGCTTTG
* *
2041055 AAAGGGTGCCACCGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2041083 AAAAAGTATGCCACTGACTTGTGGGATTTG
1 --AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2041113 AAAGGGTGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * **
2041141 GAAGGGTGCCACCGACTTGTGGGCTTCA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
** * * *
2041169 AAATAATGCTACTAACTTATGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
2041197 AAATGG-TGCCACTGACTTGTGGGCTTTG
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * * *
2041225 AAATGATGCCACTAACATGTGGGCTTCG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2041253 AAATGATGCCACTGACTTGTGGGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
2041281 AAAGGATGCTACTAACTTATGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
2041309 AAAGGATGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2041337 AAAGGATGCCACTTACTTATGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* ** *
2041365 AAAGGGTGCCACCAACTTGTGGGCTTCG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2041393 AAAGGGTGCCACCGAAC-TGTGGGCTTTG
1 AAAGGATGCCACTG-ACTTGTGGGCTTTG
* *
2041421 AAAGGGTGCCACTAACTTGTGGGCTTTGG
1 AAAGGATGCCACTGACTTGTGGGCTTT-G
* * *
2041450 AATGG-TGCCACCGATTTGTGTGGGCTTTG
1 AAAGGATGCCACTGA-CT-TGTGGGCTTTG
* *
2041479 AAAAGGGTTGCCACTAACTTGTGTGGACTTTG
1 -AAA-GGATGCCACTGACTTGTG-GG-CTTTG
* * ** *
2041511 AAAAGAGTTACCACTGACTTGTAAGCCTTG
1 -AAAG-GATGCCACTGACTTGTGGGCTTTG
* * *
2041541 AAAAGGGTGACATTGACTTGTGGGCTTTG
1 -AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2041570 AATTA-G-TGCCAGTGACTTGTGAGCTTTG
1 AA--AGGATGCCACTGACTTGTGGGCTTTG
*
2041598 AAAGGATGCCATTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
2041626 AAATGAGTTTCCACCGACTTGTGTGGACTTTG
1 AAA-G-GATGCCACTGACTTGTG-GG-CTTTG
2041658 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2041686 AAATGATGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2041714 AAATGG-TCCCACTGACTTATGGGCTTTG
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * * * *
2041742 AAATGATGCCATTAACGTGTAGGCTTT-
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2041769 AAAGGATGCGACTCACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
2041797 AAAGGATGCCATTAACTTGTAGGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
2041825 AAAGGATGCCACTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
2041853 AAAGTATGCCACTAACTTGTGGGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
2041881 AAAGGATGCCACT-AGCTTGTGGGCTTTG
1 AAAGGATGCCACTGA-CTTGTGGGCTTTG
*
2041909 AAAGGATGCCACTGACTTGTGGGTTTTTG
1 AAAGGATGCCACTGACTTGTGGG-CTTTG
* * * ** *
2041938 -AAGGAAGCTACTAACTTGTGCACGTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2041965 AAAGTATGCCATTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2041993 AAATGG-TGCCATTAACTTGT-GGCTTTG
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * * ** *
2042020 AAATGAGGCCACTAACTTGTCAGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2042048 AAAGGATGCCACTGTCTTGTGGGGTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * * *
2042076 AAAGGGTGCCACCGACTTGTGTGCACTTTCA
1 AAAGGATGCCACTGACTTGTG-G-GCTTT-G
* *
2042107 AAAGAGTTGGCACTGACTTGTGTGGACTTTG
1 AAAG-GATGCCACTGACTTGTG-GG-CTTTG
* * * *
2042138 AAAATAGTTACCACTAACTTGTGGGCTTTG
1 -AAA-GGATGCCACTGACTTGTGGGCTTTG
2042168 AAAATGG-TGCCACTGACTTGTGGG-TTTAG
1 -AAA-GGATGCCACTGACTTGTGGGCTTT-G
* * *
2042197 AATTGG-TGCCGCTAACTTGTGGGCTTTG
1 AA-AGGATGCCACTGACTTGTGGGCTTTG
*
2042225 GAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
2042253 AAATGAGTTACCACCGACTTGTGTGGGCTTTG
1 AAA-G-GATGCCACTGAC-T-TGTGGGCTTTG
*
2042285 AAAGGGTGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
2042313 AAATGATGCCATTAACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
2042341 AAATGG-TGCAACTGAATTGTGGGCTTTT
1 AAA-GGATGCCACTGACTTGTGGGCTTTG
* * *
2042369 AAATGATGCCACTAACTTGTGGGCTTTA
1 AAAGGATGCCACTGACTTGTGGGCTTTG
2042397 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2042425 AAAGGTTGCCATTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
2042453 AAAGTAAGCTACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2042481 AAAGGATGCCACTAACTTGTGGGTTTTGG
1 AAAGGATGCCACTGACTTGTGGGCTTT-G
*
2042510 AAA-GATGCCAC-GAACTTGTGAGCTTTG
1 AAAGGATGCCACTG-ACTTGTGGGCTTTG
* * *
2042537 AAATGATGCCACTAACTTGT-GGATTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
*
2042564 AAATGATGCCACTGACTTGTGGGCTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* *
2042592 AAAGGATGCCACTGTCTTGTGGGGTTTG
1 AAAGGATGCCACTGACTTGTGGGCTTTG
* * *
2042620 AAAGGGTGACA-TCGACTTATGGGCTTTG
1 AAAGGATGCCACT-GACTTGTGGGCTTTG
2042648 AAAGGGTATGCCACTGACTTGTGGGCTTTG
1 AAA-GG-ATGCCACTGACTTGTGGGCTTTG
* *
2042678 AAAAGATACCACTGACTTGTGGGCTTTAG
1 AAAGGATGCCACTGACTTGTGGGCTTT-G
2042707 AAAGG
1 AAAGG
2042712 GTTGTATTGA
Statistics
Matches: 1389, Mismatches: 235, Indels: 129
0.79 0.13 0.07
Matches are distributed among these distances:
26 2 0.00
27 84 0.06
28 952 0.69
29 73 0.05
30 143 0.10
31 25 0.02
32 110 0.08
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (28 bp):
AAAGGATGCCACTGACTTGTGGGCTTTG
Found at i:2042747 original size:26 final size:26
Alignment explanation
Indices: 2042718--2042789 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 26
2042708 AAGGGTTGTA
* *
2042718 TTGACGAAAATTTCTTGATA-AAGTTT
1 TTGAC-AAAATTTCTTGACAGAAGTTC
*
2042744 TTGACAAACA-TTCTCGACAGAAGTTC
1 TTGACAAA-ATTTCTTGACAGAAGTTC
2042770 TTGACAACAATTTCTTGACA
1 TTGACAA-AATTTCTTGACA
2042790 AACGGCAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 10 0.26
26 19 0.50
27 9 0.24
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.35
Consensus pattern (26 bp):
TTGACAAAATTTCTTGACAGAAGTTC
Found at i:2047866 original size:19 final size:19
Alignment explanation
Indices: 2047842--2047892 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
2047832 TTTCAACAAT
2047842 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
2047861 TTGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
2047880 TTGTATCGATACA
1 TTGTATCGATACA
2047893 ATGTATCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:2048921 original size:21 final size:20
Alignment explanation
Indices: 2048891--2048936 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
2048881 GTTAACAGCC
* * *
2048891 CATGATTCATGTATTTTGAG
1 CATGTTTCATGCATTTTCAG
2048911 CTATGTTTCATGCATTTTCAG
1 C-ATGTTTCATGCATTTTCAG
2048932 CATGT
1 CATGT
2048937 CCAGCATCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.22, C:0.15, G:0.17, T:0.46
Consensus pattern (20 bp):
CATGTTTCATGCATTTTCAG
Found at i:2053695 original size:20 final size:20
Alignment explanation
Indices: 2053670--2053707 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
2053660 TTTTCACAAT
2053670 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
2053690 TTGTATCGATACATTGTT
1 TTGTATCGATACATTGTT
2053708 AATGTTGCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:2055788 original size:51 final size:50
Alignment explanation
Indices: 2055725--2055893 Score: 194
Period size: 51 Copynumber: 3.3 Consensus size: 50
2055715 ATTTTTCATC
* * * *
2055725 TCGGGGATACTCCAATCTCGGTTATATTTCCAAAAAATCAATTTTTCATAA
1 TCGGGGATACTCCAA-CTCGATTTTATTTCCAAAACATCAATTTTTCACAA
* * * * ** *
2055776 TCGTGGATACTCCAACTCCGATTTTATTTCTAAAGCATCGATTTACCGCAA
1 TCGGGGATACTCCAACT-CGATTTTATTTCCAAAACATCAATTTTTCACAA
*
2055827 TCGGGGATACTCCAACTTCGATTTTATTTCCAAAACACCAATTTTTCACAA
1 TCGGGGATACTCCAAC-TCGATTTTATTTCCAAAACATCAATTTTTCACAA
*
2055878 TTGGGGATACTCCAAC
1 TCGGGGATACTCCAAC
2055894 CCCATTTTTT
Statistics
Matches: 96, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
50 2 0.02
51 93 0.97
52 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (50 bp):
TCGGGGATACTCCAACTCGATTTTATTTCCAAAACATCAATTTTTCACAA
Found at i:2055939 original size:28 final size:28
Alignment explanation
Indices: 2055880--2055944 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
2055870 TTTCACAATT
* **
2055880 GGGGATACTCCAACCCCATTTTTTCATC
1 GGGGATACTCCAACCCCATTATTTCAGA
* *
2055908 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCATTATTTCAGA
2055936 GGGGATACT
1 GGGGATACT
2055945 TAAACCCTGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (28 bp):
GGGGATACTCCAACCCCATTATTTCAGA
Found at i:2056059 original size:108 final size:109
Alignment explanation
Indices: 2055868--2056076 Score: 276
Period size: 108 Copynumber: 1.9 Consensus size: 109
2055858 AAAACACCAA
* *
2055868 TTTTTCACAATTGGGGATACTCCAACCCCATTTTTTCATCGGGGATACTCCAACCCCGTTATTTC
1 TTTTTCACAATCGGGGATACTCCAACCCCATTATTTCATCGGGGATACTCCAACCCCGTTATTTC
* * *
2055933 CGAGGGGATACTTAAACCCTGGCTTTATATCTAAAAATATTGAT
66 CGAGGAGATACTCAAACCCTGACTTTATATCTAAAAATATTGAT
* * * * * *
2055977 TTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATC-GGGATACTCCAATCCTGTTATTTT
1 TTTTTCACAATCGGGGATACTCCAACCCCATTATTTCATCGGGGATACTCCAACCCCGTTATTTC
* * * *
2056041 TGAGGAGATACTCGAACCCTGATTTTATTTCTAAAA
66 CGAGGAGATACTCAAACCCTGACTTTATATCTAAAA
2056077 TACCAATTTT
Statistics
Matches: 85, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
108 50 0.59
109 35 0.41
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (109 bp):
TTTTTCACAATCGGGGATACTCCAACCCCATTATTTCATCGGGGATACTCCAACCCCGTTATTTC
CGAGGAGATACTCAAACCCTGACTTTATATCTAAAAATATTGAT
Found at i:2059292 original size:13 final size:13
Alignment explanation
Indices: 2059274--2059298 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2059264 CATAAAATGT
2059274 TGTATCGATACAA
1 TGTATCGATACAA
2059287 TGTATCGATACA
1 TGTATCGATACA
2059299 TATTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2059475 original size:52 final size:51
Alignment explanation
Indices: 2059361--2059509 Score: 196
Period size: 52 Copynumber: 2.9 Consensus size: 51
2059351 CATTACTCAA
* *
2059361 ATGTATCGATACACTGATCT--TTGTATCGATACATGCAGGCAATTTGCCCAG
1 ATGTATCGATACACT-AT-TAAATGTATCGATACATGCAGGAAATTTGCCCAG
*
2059412 ATGTATCGATACA-TTTTAAAATGTATCGATACATGCAGGAAAATTTGCCCAG
1 ATGTATCGATACACTATT-AAATGTATCGATACATGCAGG-AAATTTGCCCAG
*
2059464 ATGTATCGATACACTATTAAATGTATCGATACTTGCAGGCAAATTT
1 ATGTATCGATACACTATTAAATGTATCGATACATGCAGG-AAATTT
2059510 TCATATTTAG
Statistics
Matches: 87, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 1 0.01
51 31 0.36
52 50 0.57
53 3 0.03
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Consensus pattern (51 bp):
ATGTATCGATACACTATTAAATGTATCGATACATGCAGGAAATTTGCCCAG
Found at i:2067806 original size:31 final size:31
Alignment explanation
Indices: 2067768--2067943 Score: 252
Period size: 31 Copynumber: 5.7 Consensus size: 31
2067758 AAAAAAAAAA
2067768 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
2067799 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
2067830 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
2067861 AAAGTCCACGACGCAGTGGC-ATC-CTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
2067890 TTTAAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
1 ---AAAGTCCACGACTCAGTGGCAATCTCT-TCTC
2067923 AAAGTCCACGACTCAGTGGCA
1 AAAGTCCACGACTCAGTGGCA
2067944 TTTTTTCTTT
Statistics
Matches: 134, Mismatches: 5, Indels: 12
0.89 0.03 0.08
Matches are distributed among these distances:
29 5 0.04
30 23 0.17
31 80 0.60
32 22 0.16
33 4 0.03
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:2067944 original size:62 final size:63
Alignment explanation
Indices: 2067768--2067974 Score: 273
Period size: 62 Copynumber: 3.3 Consensus size: 63
2067758 AAAAAAAAAA
*
2067768 AAAGTCCACGACTCAGTGGCAATCTCT-TCTCAAAGTCCACGACTCAGTGGCAATC-TCTGC-TC
1 AAAGTCCACGACTCAGTGGCAATCTCTGTCTCAAAGTCCACGACTCAGTGGC-ATCTTCT-CTTT
*
2067830 AAAGTCCACGACTCAGTGGCAATCTCTG-CTCAAAGTCCACGACGCAGTGGCATCCTTCTCTTT
1 AAAGTCCACGACTCAGTGGCAATCTCTGTCTCAAAGTCCACGACTCAGTGGCAT-CTTCTCTTT
* * *
2067893 AAAGTCCACGACTCAGTGGC-AT-TTTGTCTCAAAGTCCACGACTCAGTGGCATTTTTTCTTT
1 AAAGTCCACGACTCAGTGGCAATCTCTGTCTCAAAGTCCACGACTCAGTGGCATCTTCTCTTT
* * *
2067954 AAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
2067975 CCTTGTTCCT
Statistics
Matches: 130, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
61 29 0.22
62 77 0.59
63 24 0.18
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (63 bp):
AAAGTCCACGACTCAGTGGCAATCTCTGTCTCAAAGTCCACGACTCAGTGGCATCTTCTCTTT
Found at i:2068039 original size:27 final size:27
Alignment explanation
Indices: 2067982--2068037 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
2067972 GCACCTTGTT
* *
2067982 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCATGGCAC
*
2068009 CCTTTTAAAGCCCACAATTCCATGGCAC
1 CCTTTT-AAGCCCACAACTCCATGGCAC
2068037 C
1 C
2068038 TTCTTCTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.25, C:0.38, G:0.12, T:0.25
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCATGGCAC
Found at i:2068128 original size:37 final size:36
Alignment explanation
Indices: 2068009--2068432 Score: 572
Period size: 37 Copynumber: 11.9 Consensus size: 36
2067999 TCCGTGGCAC
* * *
2068009 CCTTTT-AAAGCCCACAATTCCATGGCAC-CTTCTT
1 CCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
*
2068043 -CTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT
1 CCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
*
2068077 -CTTTT-AAAGCCCACAACTCTGTGGCACTCTTTTT
1 CCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
2068111 CCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT
1 -CCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
2068147 -CTGTTT-AAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCT-TTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
**
2068182 CTCTTTTCAAAGCCCACAACTTTGTGGCACTCTTTTT
1 C-CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
2068219 CCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT
1 -CCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
*
2068255 -CTGTTT-AAAGCCCACAACCCCGTGGCACTCTTTTT
1 CCT-TTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
*
2068290 CTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTT
1 C-CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
2068327 CCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT
1 -CCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
2068363 -CTGTTT-AAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCT-TTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
*
2068398 CTCTTTTCAAAGCCCACGACTCCGTGGCACTCTTT
1 C-CTTTTCAAAGCCCACAACTCCGTGGCACTCTTT
2068433 AAAGCCCACA
Statistics
Matches: 354, Mismatches: 14, Indels: 41
0.87 0.03 0.10
Matches are distributed among these distances:
33 26 0.07
34 107 0.30
35 27 0.08
36 32 0.09
37 160 0.45
38 2 0.01
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (36 bp):
CCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT
Found at i:2068188 original size:71 final size:69
Alignment explanation
Indices: 2067921--2068476 Score: 661
Period size: 71 Copynumber: 8.2 Consensus size: 69
2067911 GCATTTTGTC
* * * * *
2067921 TCAAAGTCCACGACTCAGTGGCA-TTTTTTC-TTTAAAGCCCACAACTCCGTGGCACCTTGTTC-
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCT
2067983 CTTT
66 CTTT
* * * *
2067987 T--AAGTCCACAACTCCGTGGCACC-----CTTTTAAAGCCCACAATTCCATGGCACCTTCTTCT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCT
2068045 -TTT
66 CTTT
*
2068048 T-AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTC
*
2068112 CCTTT
65 TCTTT
2068117 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCT-TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT
2068182 CTCTTT
64 CTCTTT
**
2068188 TCAAAGCCCACAACTTTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTT
1 TCAAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTT-AAAGCCCACAACTCCGTGGCACCTTT
*
2068253 TTCT-GTT
62 TTCTCTTT
* *
2068260 T-AAAGCCCACAACCCCGTGGCACTCTTTTTCTCTTTTCAAAGCCCACAACTCTGTGGCACTCTT
1 TCAAAGCCCACAACTCCGTGGCAC-C-TTTT-TCTTTT-AAAGCCCACAACTCCGTGGCAC-CTT
*
2068324 TTTCCCTTT
61 TTTCTCTTT
2068333 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCT-TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT
2068398 CTCTTT
64 CTCTTT
* *
2068404 TCAAAGCCCACGACTCCGTGGCA-C----TC-TTTAAAGCCCACAACTCCGTGGCACCTTCTTCT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCT
2068463 -TTT
66 CTTT
2068466 T-AAAGCCCACA
1 TCAAAGCCCACA
2068477 CAAGTTGGTG
Statistics
Matches: 438, Mismatches: 29, Indels: 51
0.85 0.06 0.10
Matches are distributed among these distances:
60 1 0.00
61 42 0.10
62 25 0.06
63 7 0.02
64 43 0.10
66 3 0.01
67 24 0.05
68 6 0.01
69 4 0.01
70 31 0.07
71 164 0.37
72 27 0.06
73 16 0.04
74 45 0.10
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.33
Consensus pattern (69 bp):
TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCT
CTTT
Found at i:2068233 original size:108 final size:108
Alignment explanation
Indices: 2068008--2068476 Score: 743
Period size: 108 Copynumber: 4.5 Consensus size: 108
2067998 CTCCGTGGCA
* * * *
2068008 CCCTTTT-AAAGCCCACAATTCCATGGCACCTTCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-
1 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACT
2068071 C-TTTT-TCTTTT-AAAGCCCACAACTCTGTGGCACTCTTTTT
66 CTTTTTCTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTT
2068111 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACT
1 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACT
*
2068176 CTTTTTCTCTTTTCAAAGCCCACAACTTTGTGGCACTCTTTTT
66 CTTTTTCTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTT
*
2068219 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACCCCGTGGCACT
1 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACT
2068284 CTTTTTCTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTT
66 CTTTTTCTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTT
2068327 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACT
1 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACT
* *
2068392 CTTTTTCTCTTTTCAAAGCCCACGACTCCGTGGCA--C----T
66 CTTTTTCTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTT
* *
2068429 --C-TTT-AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTAAAGCCCACA
1 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACA
2068477 CAAGTTGGTG
Statistics
Matches: 349, Mismatches: 12, Indels: 15
0.93 0.03 0.04
Matches are distributed among these distances:
98 42 0.12
99 3 0.01
100 1 0.00
102 1 0.00
103 7 0.02
104 52 0.15
105 1 0.00
106 5 0.01
107 6 0.02
108 231 0.66
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (108 bp):
CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACT
CTTTTTCTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTTT
Found at i:2068508 original size:33 final size:33
Alignment explanation
Indices: 2068466--2068530 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
2068456 TTCTTCTTTT
*
2068466 TAAAGCCCACACAAGTTGGTGGCAACCATTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCATTCTC
*
2068499 TAAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 TAAAGCCCACACAAGTCGGTGGCAACCATTCT
2068531 AAGCCCAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.20
Consensus pattern (33 bp):
TAAAGCCCACACAAGTCGGTGGCAACCATTCTC
Found at i:2068594 original size:49 final size:47
Alignment explanation
Indices: 2068530--2069079 Score: 655
Period size: 49 Copynumber: 11.8 Consensus size: 47
2068520 GCAACCCTTC
* * * *
2068530 TAAGCCCAATATAGCTGGCCTTGAATCAGCATAGTGGCACCTTTCTCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TCTCTT
* * * *
2068579 TAACTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCTT
* * * *
2068628 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TCTCTT
2068677 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTCTT
* * * *
2068720 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTC-TCTT
2068769 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTCTT
* * * * *
2068812 TAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCATCATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTC-TCTT
*
2068861 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TC-TCTT
2068910 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTC-TCTT
*
2068958 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----ACTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTCTT
2069001 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C-CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTCTT
*
2069044 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
2069080 ACATCCTTTT
Statistics
Matches: 446, Mismatches: 39, Indels: 38
0.85 0.07 0.07
Matches are distributed among these distances:
43 157 0.35
45 1 0.00
47 2 0.00
48 50 0.11
49 234 0.52
50 2 0.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (47 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCTCTT
Found at i:2068737 original size:43 final size:44
Alignment explanation
Indices: 2068674--2069088 Score: 532
Period size: 43 Copynumber: 9.1 Consensus size: 44
2068664 GCACCTTTAT
2068674 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATC
* * *
2068717 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---TC
2068764 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATC
* * * *
2068809 CTTTAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCATCATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG---CATC
*
2068856 ATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---TC
2068905 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTC
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA--TC
*
2068953 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-A
1 --CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATC
2068998 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATC
* *
2069041 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATC
2069085 CTTT
1 CTTT
2069089 TTCATCATCT
Statistics
Matches: 335, Mismatches: 21, Indels: 31
0.87 0.05 0.08
Matches are distributed among these distances:
43 157 0.47
44 5 0.01
45 1 0.00
46 4 0.01
47 2 0.01
48 47 0.14
49 119 0.36
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (44 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATC
Found at i:2068750 original size:92 final size:91
Alignment explanation
Indices: 2068622--2069088 Score: 665
Period size: 92 Copynumber: 5.1 Consensus size: 91
2068612 TTGGCACCTT
* * *
2068622 CACCATTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAAT
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCATCTTTAAGTCCAAT
2068687 GTAGCTGGCCTTGAATCAGCACATTGG
65 GTAGCTGGCCTTGAATCAGCACATTGG
* *
2068714 CACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAAT
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTCATCTTTAAGTCCAAT
2068779 GTAGCTGGCCTTGAATCAGCACATTGG
65 GTAGCTGGCCTTGAATCAGCACATTGG
* * *
2068806 CACCTTTAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCATCATCATCTTTAAGTCCAAT
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTCATCTTTAAGTCCAAT
*
2068871 GTAGCTGGCCTTGACTCAGCACATTGG
65 GTAGCTGGCCTTGAATCAGCACATTGG
* *
2068898 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGT
1 CA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGT
2068963 CCAATGTAGCTGGCCTTGAATCAGCACATTGG
60 CCAATGTAGCTGGCCTTGAATCAGCACATTGG
* * * *
2068995 CAACTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGTTCAATG
1 CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGTCCAATG
*
2069055 TAGCTGGCCTTGAATCAGCACATTGA
66 TAGCTGGCCTTGAATCAGCACATTGG
2069081 CATCCTTT
1 CA-CCTTT
2069089 TTCATCATCT
Statistics
Matches: 349, Mismatches: 18, Indels: 21
0.90 0.05 0.05
Matches are distributed among these distances:
86 40 0.11
87 4 0.01
88 1 0.00
91 42 0.12
92 176 0.50
93 1 0.00
96 1 0.00
97 46 0.13
98 38 0.11
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.30
Consensus pattern (91 bp):
CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGTCCAATG
TAGCTGGCCTTGAATCAGCACATTGG
Found at i:2069042 original size:91 final size:86
Alignment explanation
Indices: 2068907--2069079 Score: 292
Period size: 91 Copynumber: 2.0 Consensus size: 86
2068897 GCACCTTCAT
2068907 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATGTAG
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGTCCAATGTAG
2068972 CTGGCCTTGAATCAGCACATTGGCAA
61 CTGGCCTTGAATCAGCACATTGGCAA
*
2068998 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTTCAATGTAGCTGGC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATGTAGCTGGC
2069063 CTTGAATCAGCACATTG
66 CTTGAATCAGCACATTG
2069080 ACATCCTTTT
Statistics
Matches: 81, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
86 38 0.47
88 1 0.01
91 42 0.52
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (86 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATGTAGCTGGC
CTTGAATCAGCACATTGGCAA
Found at i:2072008 original size:20 final size:20
Alignment explanation
Indices: 2071980--2072054 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
2071970 TTTTACCCTG
2071980 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
2072000 ATATATCGATACATGTGTGA
1 ATGTATCGATACATTTTTCA
* * *
2072020 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
2072040 ATGTATCGATACATT
1 ATGTATCGATACATT
2072055 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:2073000 original size:23 final size:23
Alignment explanation
Indices: 2072964--2073015 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
2072954 AGCCTTTGAC
2072964 CATGCA-TTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
2072986 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
2073009 CATGCAT
1 CATGCAT
2073016 CTTTAACATG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 6 0.21
23 23 0.79
ACGTcount: A:0.19, C:0.12, G:0.10, T:0.60
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Found at i:2078058 original size:34 final size:33
Alignment explanation
Indices: 2078015--2078149 Score: 139
Period size: 34 Copynumber: 4.1 Consensus size: 33
2078005 TCAAATATTT
2078015 TTCCAAGTCCACGACTCAGTGGCATCCTTT-TCC
1 TTCCAAGTCCACGACTCAGTGGCAT-CTTTCTCC
* **
2078048 TTCCAAAGTCCACAACTCAGTGGCATC-TTCTTT
1 TTCC-AAGTCCACGACTCAGTGGCATCTTTCTCC
** * * * * *
2078081 TTATAAGTCCACGGCTTAGTCGCCATCTTTGTTC
1 TTCCAAGTCCACGACTCAGT-GGCATCTTTCTCC
2078115 TTCCAAGTCCACGACTCAGTGGCATCTTTCTCC
1 TTCCAAGTCCACGACTCAGTGGCATCTTTCTCC
2078148 TT
1 TT
2078150 TTCAAAGCCC
Statistics
Matches: 80, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
32 15 0.19
33 25 0.31
34 40 0.50
ACGTcount: A:0.19, C:0.32, G:0.15, T:0.34
Consensus pattern (33 bp):
TTCCAAGTCCACGACTCAGTGGCATCTTTCTCC
Found at i:2078225 original size:61 final size:60
Alignment explanation
Indices: 2078139--2078456 Score: 372
Period size: 61 Copynumber: 5.2 Consensus size: 60
2078129 CTCAGTGGCA
*
2078139 TCTTTCTCCTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACA
1 TCTTT-TCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTT-CAGTCCTCAAAGAGCAGGACG
*
2078202 TCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTTT-AGTCCTCAAAGAGCAAGACG
1 TCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA--CTTTCAGTCCTCAAAGAGCAGGACG
* * * * * *
2078263 CCTTTTTCTTTTCAAGCCCACACGAGTTGGTGGCACACTTCAGTCCTCAAAGAGCAGGATG
1 TCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCAGTCCTCAAAGAGCAGGACG
* * * * * *
2078324 TTTTTTCC-TTCAAAGCCCACACGAGTTTGGTGGCACCTTTTAGTCCTCAAAGAGTAAGACG
1 TCTTTTCCTTTTAAAGCCCACACAAG-TTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACG
* * *
2078385 CCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACG
1 TCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTT-TCAGTCCTCAAAGAGCAGGACG
2078446 -CTCTTTCCTTT
1 TCT-TTTCCTTT
2078457 CGTCCTTTAG
Statistics
Matches: 217, Mismatches: 29, Indels: 20
0.82 0.11 0.08
Matches are distributed among these distances:
59 1 0.00
60 22 0.10
61 162 0.75
62 23 0.11
63 9 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (60 bp):
TCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGACG
Found at i:2078291 original size:122 final size:122
Alignment explanation
Indices: 2078142--2078444 Score: 448
Period size: 122 Copynumber: 2.5 Consensus size: 122
2078132 AGTGGCATCT
2078142 TTCTCCTTTTCAAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACATCTTT
1 TTCTCCTTTTC-AAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACATCTTT
*
2078207 TCCTTTTAAAGCCCACACAAG-TTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCC
65 TCC-TTCAAAGCCCACACAAGTTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCC
* * * * ** *
2078265 TTTTTCTTTTCAAGCCCACACGAGTTGGTGGCACACTT-CAGTCCTCAAAGAGCAGGATGTTTTT
1 TTCTCCTTTTCAAGCCCACACAAGTTGGTGGCAC-TTTCCAGTCCTCAAAGAGCAGGACATCTTT
* * *
2078329 TCCTTCAAAGCCCACACGAGTTTGGTGGCACCTTTTAGTCCTCAAAGAGTAAGACGCC
65 TCCTTCAAAGCCCACACAAGTTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCC
* *
2078387 TTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGAC
1 TTCTCCTTTTCAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGAC
2078445 GCTCTTTCCT
Statistics
Matches: 159, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
121 16 0.10
122 132 0.83
123 11 0.07
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (122 bp):
TTCTCCTTTTCAAGCCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGACATCTTTT
CCTTCAAAGCCCACACAAGTTTGGTGGCACCCTTTAGTCCTCAAAGAGCAAGACGCC
Found at i:2078535 original size:100 final size:100
Alignment explanation
Indices: 2078362--2078544 Score: 269
Period size: 100 Copynumber: 1.8 Consensus size: 100
2078352 GGTGGCACCT
* *
2078362 TTTAGTCCTCAAAGAGTAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCA
1 TTTAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCA
2078427 GTCCTCAAAGAGCAGGACGCTCTTTCCTTTCGTCC
66 GTCCTCAAAGAGCAGGACGCTCTTTCCTTTCGTCC
* * * * * * *
2078462 TTTAGTCCTCAAGGAGCAGGATGCCTTTTCCTTTCGAAGCCCACACAAGTTGGTGG-ACCTTTCT
1 TTTAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCC
2078526 AGTCCTCAAAGAGCAGGAC
65 AGTCCTCAAAGAGCAGGAC
2078545 ACCTTTTTCT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 1 0.01
100 72 0.99
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (100 bp):
TTTAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCCA
GTCCTCAAAGAGCAGGACGCTCTTTCCTTTCGTCC
Found at i:2078563 original size:61 final size:60
Alignment explanation
Indices: 2078462--2078791 Score: 446
Period size: 61 Copynumber: 5.4 Consensus size: 60
2078452 CCTTTCGTCC
* * **
2078462 TTTAGTCCTCAAGGAGCAGGATGCCTTTTCCTTTCGAAGCCCACACAAGTTGGTGGACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGACCT
* * *
2078522 TTCTAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTT
1 TT-TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG-ACCT
**
2078584 TTTAGTCCTCAGGGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG-ACCT
* * *
2078645 TTTAGTCCTCAAAGAGTAGGATGCCTTTGCCTTTTAAAGCCCACACAAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG-ACCT
* *
2078706 TTTAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGG-CACT
1 TTTAGTCCTCAAAGAGCAGGACGCC-TTTTCCTTTTAAAGCCCACACAAGTTGGTGGAC-CT
* *
2078767 TCCTAGTCCTCAAAGAGTAGGACGC
1 T-TTAGTCCTCAAAGAGCAGGACGC
2078792 TCTCTCCTTT
Statistics
Matches: 240, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
60 3 0.01
61 183 0.76
62 54 0.22
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (60 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGACCT
Found at i:2078569 original size:161 final size:161
Alignment explanation
Indices: 2078304--2078617 Score: 445
Period size: 161 Copynumber: 2.0 Consensus size: 161
2078294 GGCACACTTC
** *
2078304 AGTCCTCAAAGAGCAGGATGTTTTTTCCTTCAAAGCCCACACGAGTTTGGTGGCACCTTTTAGTC
1 AGTCCTCAAAGAGCAGGATGCCTTTTCCTTCAAAGCCCACACAAGTTTGGTGGCACCTTTTAGTC
* *
2078369 CTCAAAGAGTAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCA
66 CTCAAAGAGCAAGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCA
2078434 AAGAGCAGGACG-CTCTTTCCTTTCGTCCTTT
131 AAGAGCAGGACGCCT-TTTCCTTTCGTCCTTT
* *
2078465 AGTCCTCAAGGAGCAGGATGCCTTTTCCTTTCGAAGCCCACACAAG-TTGGTGG-ACCTTTCTAG
1 AGTCCTCAAAGAGCAGGATGCCTTTTCC-TTCAAAGCCCACACAAGTTTGGTGGCACCTTT-TAG
* * * ***
2078528 TCCTCAAAGAGCAGGACACCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCT
64 TCCTCAAAGAGCAAGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCT
**
2078593 CAGGGAGCAGGACGCCTTTTCCTTT
129 CAAAGAGCAGGACGCCTTTTCCTTT
2078618 TAAAGCCCAC
Statistics
Matches: 135, Mismatches: 15, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
160 6 0.04
161 112 0.83
162 17 0.13
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (161 bp):
AGTCCTCAAAGAGCAGGATGCCTTTTCCTTCAAAGCCCACACAAGTTTGGTGGCACCTTTTAGTC
CTCAAAGAGCAAGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCA
AAGAGCAGGACGCCTTTTCCTTTCGTCCTTT
Found at i:2078624 original size:222 final size:222
Alignment explanation
Indices: 2078238--2078678 Score: 597
Period size: 222 Copynumber: 2.0 Consensus size: 222
2078228 TTGGTGGCAC
* *
2078238 CCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTCAAGCCCACACGAGTTGGTGGCACACTT
1 CCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAGCCCACACAAGTTGGTGGCACACTT
*** *
2078303 CAGTCCTCAAAGAGCAGGATGTTTTTTCCTTCAAAGCCCACACGAGTTTGGTGGCACCTTTTAGT
66 CAGTCCTCAAAGAGCAGGAACCTTTTTCCTTCAAAGCCCACACAAGTTTGGTGGCACCTTTTAGT
*
2078368 CCTCAAAGAGTAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCT
131 CCTCAAAGAGCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CCAGTCCT
2078432 CAAAGAGCAGGACGCTCTTT-CCTTTCGT
195 CAAAGAGCAGGACGC-CTTTGCCTTTCGT
* * *
2078460 CCTTTAGTCCTCAAGGAGCAGGATGCC-TTTTCCTTTCGAAGCCCACACAAGTTGGTGG-AC-CT
1 CCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTC-AAGCCCACACAAGTTGGTGGCACAC-
* * *
2078522 TTCTAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTAAAGCCCACACAAG-TTGGTGGCACTTTT
64 TTC-AGTCCTCAAAGAGCAGGA-ACCTTTTTCCTTCAAAGCCCACACAAGTTTGGTGGCACCTTT
** * * **
2078586 TAGTCCTCAGGGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGT
127 TAGTCCTCAAAGAGCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGT
* *
2078651 CCTCAAAGAGTAGGATGCCTTTGCCTTT
192 CCTCAAAGAGCAGGACGCCTTTGCCTTT
2078679 TAAAGCCCAC
Statistics
Matches: 192, Mismatches: 21, Indels: 12
0.85 0.09 0.05
Matches are distributed among these distances:
220 1 0.01
221 18 0.09
222 149 0.78
223 24 0.12
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (222 bp):
CCTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCCTTTCAAGCCCACACAAGTTGGTGGCACACTT
CAGTCCTCAAAGAGCAGGAACCTTTTTCCTTCAAAGCCCACACAAGTTTGGTGGCACCTTTTAGT
CCTCAAAGAGCAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTC
AAAGAGCAGGACGCCTTTGCCTTTCGT
Found at i:2078646 original size:29 final size:29
Alignment explanation
Indices: 2078613--2078709 Score: 81
Period size: 29 Copynumber: 3.2 Consensus size: 29
2078603 GACGCCTTTT
2078613 CCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * *
2078642 CCTTTT--AGTCCTCAAAGAGTAGGATGCCTTTG
1 CCTTTTAAAGCCCACACA-AGTTGG-TGGC---A
2078674 CCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA
2078703 CCTTTTA
1 CCTTTTA
2078710 GTCCTCAAAG
Statistics
Matches: 49, Mismatches: 12, Indels: 14
0.65 0.16 0.19
Matches are distributed among these distances:
27 7 0.14
28 5 0.10
29 16 0.33
32 9 0.18
33 5 0.10
34 7 0.14
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (29 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:2078689 original size:283 final size:283
Alignment explanation
Indices: 2078182--2078727 Score: 803
Period size: 283 Copynumber: 1.9 Consensus size: 283
2078172 GGCACTTTCC
* *
2078182 AGTCCTCAAAGAGCAGGACATCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
1 AGTCCTCAAAGAGCAGGACACCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
* * *
2078247 CTCAAAGAGCAAGACGCCTTTTTCTTTTCAAGCCCACACGAGTTGGTGGCACACTTCAGTCCTCA
66 CTCAAAGAGCAAGACACCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACACTTCAGTCCTCA
* ** *
2078312 AAGAGCAGGATGTTTTTTCCTTCAAAGCCCACACGAGTTTGGTGGCACCTTTTAGTCCTCAAAGA
131 AAGAGCAGGACGCCTTTTCCTTCAAAGCCCACACAAGTTTGGTGGCACCTTTTAGTCCTCAAAGA
2078377 GTAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCA
196 GTAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CCAGTCCTCAAAGAGCA
2078441 GGACGCTCTTTCCTTTCGTCCTTT
260 GGACGCTCTTTCCTTTCGTCCTTT
* ** * *
2078465 AGTCCTCAAGGAGCAGGATGCCTTTTCCTTTCGAAGCCCACACAAGTTGGTGG-ACCTTTCTAGT
1 AGTCCTCAAAGAGCAGGACACCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTT-TAGT
* ** *
2078529 CCTCAAAGAGCAGGACACCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTC
65 CCTCAAAGAGCAAGACACCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACACTTCAGTCCTC
** *
2078594 AGGGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAG-TTGGTGGCACCTTTTAGTCCTCAAA
130 AAAGAGCAGGACGCCTTTTCC-TTCAAAGCCCACACAAGTTTGGTGGCACCTTTTAGTCCTCAAA
* * **
2078658 GAGTAGGATGCCTT-TGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAG
194 GAGTAAGACGCCTTCT-CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAG
2078722 CAGGAC
258 CAGGAC
2078728 ACCTTTTTCT
Statistics
Matches: 234, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
282 6 0.03
283 210 0.90
284 18 0.08
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (283 bp):
AGTCCTCAAAGAGCAGGACACCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTTAGTC
CTCAAAGAGCAAGACACCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACACTTCAGTCCTCA
AAGAGCAGGACGCCTTTTCCTTCAAAGCCCACACAAGTTTGGTGGCACCTTTTAGTCCTCAAAGA
GTAAGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAG
GACGCTCTTTCCTTTCGTCCTTT
Found at i:2078876 original size:55 final size:54
Alignment explanation
Indices: 2078802--2079121 Score: 262
Period size: 55 Copynumber: 5.5 Consensus size: 54
2078792 TCTCTCCTTT
* * *
2078802 CACTCTTTGGTCCTTAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGCGG
1 CACT-TTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
* * * *
2078857 CACTTTTCAGTCCTTAAAGAGCAGGATGTCTTTTAAAGCCCACACAAGTTGGTGG
1 CACTTTT-AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
* * *
2078912 CACCTTTTAGTCCTCAAAGAGCAGGGCACCTTTCTTCCTTTTAAAGTCCACACAAGTTGGTGG
1 CA-CTTTTAGTCCTCAAAGAGCA-GG-A-----C-GCCTTTCAAAGCCCACACAAGTTGGTGG
* *
2078975 CACCTTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTTCAAAGCCCACTCGAGTTGGTGG
1 CA-CTTTTAGTCCTCAAAGAGCAGGACG-C--CT--TTCAAAGCCCACACAAGTTGGTGG
* * * *
2079035 CAGTCTTTGGTCCTCAAAGAACAGGATGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGG
1 CACT-TTTAGTCCTCAAAGAGCAGGACGCC--TTTC-----AAAGCCCACACAAGTTGGTGG
*
2079097 CACCTTTAGTCCTCAAAGAGCAGGA
1 CACTTTTAGTCCTCAAAGAGCAGGA
2079122 TGTCTTTTCT
Statistics
Matches: 217, Mismatches: 25, Indels: 40
0.77 0.09 0.14
Matches are distributed among these distances:
54 3 0.01
55 62 0.29
56 9 0.04
57 5 0.02
58 2 0.01
59 3 0.01
60 42 0.19
61 20 0.09
62 23 0.11
63 48 0.22
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (54 bp):
CACTTTTAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGG
Found at i:2079050 original size:272 final size:273
Alignment explanation
Indices: 2078553--2079054 Score: 708
Period size: 272 Copynumber: 1.8 Consensus size: 273
2078543 ACACCTTTTT
* * * ** *
2078553 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAGGGAGCAGGACGCCTTTTCCTTT
1 CTTTCAAAGCCCACACAAGTTGGCGGCACTTTTCAGTCCTCAAAGAGCAGGA---C-TGTCCTTT
* **
2078618 TAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCCTTTGCCTTTTAAA
62 TAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTGCCTTTTAAA
* * *
2078683 GCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTTTCTTTTTAAAGCC
127 GCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTCTCTCTTCAAAGCC
2078748 CACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGTAGGACGCTCTCTCCTTTCACTCTTTGGT
192 CACACAAGTTGGTGGCACTT-CTAGTCCTCAAAGAGTAGGACGCTCTCTCCTTTCACTCTTTGGT
2078813 CCTTAAAGAGCAGGACGC
256 CCTTAAAGAGCAGGACGC
*
2078831 CTTTCAAAGCCCACACAAGTTGGCGGCACTTTTCAGTCCTTAAAGAGCAGGA-TGT-CTTTTAAA
1 CTTTCAAAGCCCACACAAGTTGGCGGCACTTTTCAGTCCTCAAAGAGCAGGACTGTCCTTTTAAA
* * *
2078894 GCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGGCACCTTTCTTCCTTTTAAAGT
66 GCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACC-TT-TGCCTTTTAAAGC
*
2078959 CCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCC-TTCTC-CTTCAAAGCCCA
129 CCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTCTCTCTTCAAAGCCCA
* * *
2079022 CTCGAGTTGGTGGCAGTCTT-TGGTCCTCAAAGA
194 CACAAGTTGGTGGCA--CTTCTAGTCCTCAAAGA
2079055 ACAGGATGCC
Statistics
Matches: 200, Mismatches: 20, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
272 87 0.44
273 8 0.04
274 59 0.29
278 46 0.23
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (273 bp):
CTTTCAAAGCCCACACAAGTTGGCGGCACTTTTCAGTCCTCAAAGAGCAGGACTGTCCTTTTAAA
GCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTGCCTTTTAAAGCCC
ACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACACCTTTCTCTCTTCAAAGCCCACA
CAAGTTGGTGGCACTTCTAGTCCTCAAAGAGTAGGACGCTCTCTCCTTTCACTCTTTGGTCCTTA
AAGAGCAGGACGC
Found at i:2079060 original size:60 final size:61
Alignment explanation
Indices: 2078830--2079184 Score: 354
Period size: 60 Copynumber: 5.9 Consensus size: 61
2078820 GAGCAGGACG
* * *
2078830 CCTTTCAAAGCCCACACAAGTTGGCGGCA-CTTTTCAGTCCTTAAAGAGCAGGA----TGTCT
1 CCTTT-AAAGCCCACACAAGTTGGTGGCACCTTTT-AGTCCTCAAAGAGCAGGACGCCTTTCT
* *
2078888 --TTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGGCACCTTTCTT
1 CCTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTC-T
*
2078948 CCTTTTAAAGTCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCC-TTCT
1 CC-TTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCT
* * * * * * * *
2079009 CCTTCAAAGCCCACTCGAGTTGGTGGCA-GTCTTTGGTCCTCAAAGAACAGGATGCCTTTTT
1 CCTTTAAAGCCCACACAAGTTGGTGGCACCT-TTTAGTCCTCAAAGAGCAGGACGCCTTTCT
* * *
2079070 CTTTTTAAAGCCCACACAAGTTGGTGGCACC-TTTAGTCCTCAAAGAGCAGGATGTCTTT-T
1 C-CTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCT
* *** ** *
2079130 CTTTTTAAAGCCCACACAAACGGGTGGCACCTCCTAGTCCTCAAAGAGCAAGACG
1 C-CTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACG
2079185 TACTTTATTT
Statistics
Matches: 252, Mismatches: 31, Indels: 25
0.82 0.10 0.08
Matches are distributed among these distances:
55 38 0.15
56 8 0.03
59 4 0.02
60 74 0.29
61 51 0.20
62 26 0.10
63 51 0.20
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (61 bp):
CCTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTCT
Found at i:2079140 original size:122 final size:120
Alignment explanation
Indices: 2078830--2079176 Score: 389
Period size: 122 Copynumber: 2.9 Consensus size: 120
2078820 GAGCAGGACG
* * * *
2078830 CCTTTCAAAGCCCACACAAGTTGGCGGCACTTTTCAGTCCTTAAAGAGCAGGATG---TCTTTTA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGATGCTTTCTTTTA
* *
2078892 AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGGCACCTTTCTT
65 AAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAACAGGACACCTTTCTT
* * *
2078948 CCTTTTAAAGTCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTCTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTTAGTCCTCAAAGAGCAGGATG-CTT-TCTTT
* * * * * **
2079013 CAAAGCCCACTCGAGTTGGTGGCA-GTCTTTGGTCCTCAAAGAACAGGATGCCTTT-TT
63 TAAAGCCCACACAAGTTGGTGGCACCT-TTTAGTCCTCAAAGAACAGGACACCTTTCTT
*
2079070 CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGTCTTTTCTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATG-C-TTTC-TTT
*** **
2079135 TAAAGCCCACACAAACGGGTGGCACCTCCTAGTCCTCAAAGA
63 TAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGA
2079177 GCAAGACGTA
Statistics
Matches: 188, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
118 45 0.24
119 3 0.02
121 25 0.13
122 66 0.35
123 49 0.26
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (120 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGATGCTTTCTTTTAA
AGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAACAGGACACCTTTCTT
Found at i:2079291 original size:43 final size:44
Alignment explanation
Indices: 2079166--2079569 Score: 306
Period size: 46 Copynumber: 9.1 Consensus size: 44
2079156 GCACCTCCTA
* * * * **
2079166 GTCCTCAAAGAGCAAGACGTACTTTATTTTCCTCTTCCCCCCTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTT
* * *
2079210 GTCCTCAAAGAGCAGGATGCACTTCA-TTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTT-TTCT-CCTTTT
* *
2079255 GTCCTCATAGAGCAGGACGCACTTTATTTTCCTTTTCTCC-TCT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTT
* * * *
2079298 GTCCTCAAAGAGTATGACACATTTTATTTTCCTTTTCTCC-TTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTT
* * *
2079341 GTCCTCAAAGAGCAGGACACA-TTCCATTCCCTT-TTTTTCTCCTTTT
1 GTCCTCAAAGAGCAGGACGCACTT-TATT---TTCCTTTTCTCCTTTT
** * * *
2079387 GTCCTCAAAGAGCAGGATACA-TTCCATTCCCTT-TTTTTCTCTTTTT
1 GTCCTCAAAGAGCAGGACGCACTT-TATT---TTCCTTTTCTCCTTTT
* * * *
2079433 GTCCTCAAAGAGCAGGACGCACTTCATTTCCCTCTTTTTCCTTCTA
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCT-TTTCTCCTT-TT
* * *
2079479 GTTCTTAAAGAGCAGGATGCACTTTATTTTCCTTTT-TCC-TTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTT
* * * * * *
2079521 ATCCTCAAAGAGCAGGATGCATTTTGTTTTCCTTTTTTTC-TTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTT
2079564 GTCCTC
1 GTCCTC
2079570 GAGAAGTAGG
Statistics
Matches: 301, Mismatches: 46, Indels: 27
0.80 0.12 0.07
Matches are distributed among these distances:
42 34 0.11
43 79 0.26
44 30 0.10
45 48 0.16
46 108 0.36
47 2 0.01
ACGTcount: A:0.19, C:0.27, G:0.12, T:0.41
Consensus pattern (44 bp):
GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTT
Found at i:2079489 original size:92 final size:87
Alignment explanation
Indices: 2079209--2079569 Score: 290
Period size: 88 Copynumber: 4.1 Consensus size: 87
2079199 CTTCCCCCCT
* * *
2079209 TGTCCTCAAAGAGCAGGATGCACTTCATTTCCTTCTTTTCCCTTTTGTCCTCATAGAGCAGGACG
1 TGTCCTCAAAGAGCAGGATACA-TTCA-TTCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACG
* * *
2079274 CACTTTATTTTCCTTTTCTCC-TC
64 CACTTCATTTCCCTTTTTTCCTTC
* * * * * *
2079297 TGTCCTCAAAGAGTATGACACATTTTATT--TTCCTTTTCTCCTTTGTCCTCAAAGAGCAGGACA
1 TGTCCTCAAAGAGCAGGATACA-TTCATTCCTT-CTTTTCTCTTTTGTCCTCAAAGAGCAGGACG
*
2079360 CA-TTCCA-TTCCCTTTTTTTCTCCTTT
64 CACTT-CATTTCCC--TTTTT-TCCTTC
*
2079386 TGTCCTCAAAGAGCAGGATACATTCCATTCCCTTTTTTTCTCTTTTTGTCCTCAAAGAGCAGGAC
1 TGTCCTCAAAGAGCAGGATACATT-CATT-CCTTCTTTTCTC-TTTTGTCCTCAAAGAGCAGGAC
2079451 GCACTTCATTTCCCTCTTTTTCCTTC
63 GCACTTCATTTCCCT-TTTTTCCTTC
* * * * * * *
2079477 TAGTTCTTAAAGAGCAGGATGCACTTTATT--TTCCTTTT-TCCTTTATCCTCAAAGAGCAGGAT
1 T-GTCCTCAAAGAGCAGGATACA-TTCATTCCTT-CTTTTCTCTTTTGTCCTCAAAGAGCAGGAC
* ** * *
2079539 GCATTTTGTTTTCCTTTTTTTCTT-
63 GCACTTCATTTCCCTTTTTTCCTTC
2079563 TGTCCTC
1 TGTCCTC
2079570 GAGAAGTAGG
Statistics
Matches: 219, Mismatches: 37, Indels: 37
0.75 0.13 0.13
Matches are distributed among these distances:
85 12 0.05
86 31 0.14
87 14 0.06
88 56 0.26
89 27 0.12
90 4 0.02
91 14 0.06
92 52 0.24
93 9 0.04
ACGTcount: A:0.19, C:0.27, G:0.12, T:0.42
Consensus pattern (87 bp):
TGTCCTCAAAGAGCAGGATACATTCATTCCTTCTTTTCTCTTTTGTCCTCAAAGAGCAGGACGCA
CTTCATTTCCCTTTTTTCCTTC
Found at i:2080354 original size:20 final size:20
Alignment explanation
Indices: 2080329--2080420 Score: 100
Period size: 20 Copynumber: 4.6 Consensus size: 20
2080319 TACCCAGATA
2080329 TATCGATACATTTTGCATTG
1 TATCGATACATTTTGCATTG
2080349 TATCGATACA--TTGCTTATTG
1 TATCGATACATTTTGC--ATTG
* *
2080369 TTTCGATACATTGCT-CATTG
1 TATCGATACATT-TTGCATTG
* *
2080389 TATCGATACATTTTACAATG
1 TATCGATACATTTTGCATTG
2080409 TATCGATACATT
1 TATCGATACATT
2080421 CAGGCATTTT
Statistics
Matches: 61, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
18 4 0.07
19 1 0.02
20 54 0.89
22 1 0.02
23 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.43
Consensus pattern (20 bp):
TATCGATACATTTTGCATTG
Found at i:2082781 original size:51 final size:49
Alignment explanation
Indices: 2082722--2082889 Score: 165
Period size: 51 Copynumber: 3.3 Consensus size: 49
2082712 ATGTTTCATC
*
2082722 TCGAGGATACTCCAATCTCGGTTCTATTTCCAAAACATCAATTTTTCATAA
1 TCGAGGATACTCCAA-CTCGATT-TATTTCCAAAACATCAATTTTTCATAA
* * * * * ** **
2082773 TCAAGGATACTCTAACTCCGATTTTATTTCTAAAGCATCCATTTACCGCAA
1 TCGAGGATACTCCAACT-CGA-TTTATTTCCAAAACATCAATTTTTCATAA
* *
2082824 TCGGGGATACTCCAACTCTGATTTATTTCCAAAACACCAATTTTTCATAA
1 TCGAGGATACTCCAACTC-GATTTATTTCCAAAACATCAATTTTTCATAA
* *
2082874 TTGGGGATACTCCAAC
1 TCGAGGATACTCCAAC
2082890 CCCATTTTTT
Statistics
Matches: 92, Mismatches: 22, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
50 39 0.42
51 51 0.55
52 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.33
Consensus pattern (49 bp):
TCGAGGATACTCCAACTCGATTTATTTCCAAAACATCAATTTTTCATAA
Found at i:2082897 original size:30 final size:29
Alignment explanation
Indices: 2082863--2082921 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
2082853 CAAAACACCA
*
2082863 ATTTTTCATAATTGGGGATACTCCAACCCC
1 ATTTTT-ATAATCGGGGATACTCCAACCCC
* * *
2082893 ATTTTTTTCATCGGGGATACTCTAACCCC
1 ATTTTTATAATCGGGGATACTCCAACCCC
2082922 GTTATTTCCG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 19 0.76
30 6 0.24
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.36
Consensus pattern (29 bp):
ATTTTTATAATCGGGGATACTCCAACCCC
Found at i:2083021 original size:109 final size:108
Alignment explanation
Indices: 2082827--2083106 Score: 305
Period size: 109 Copynumber: 2.6 Consensus size: 108
2082817 ACCGCAATCG
* ** * * * * *
2082827 GGGATACTCCAACTCTGA-TTTATTTCCAAAACACCAATTTTTCATAATTGGGGATACTCCAACC
1 GGGATACTCCAACCCCAACTTTATATCTAAAATACCTATTTTTCATAATCGGGGATACTCCAACC
* * * *
2082891 CCATTTTTTTCATCGGGGATACTCTAACCCCGTTATTTCCGAA
66 CCAGTTATTTCATCGGAGATACTCCAACCCCGTTATTTCCGAA
** * *
2082934 GGGATACTCCAACCCCGGCTTTATATCTAAAAATA-TTGATTTTTTCATAATCGGGGGTACTCCA
1 GGGATACTCCAACCCCAACTTTATATCT-AAAATACCT-A-TTTTTCATAATCGGGGATACTCCA
* * * *
2082998 ATCCC-GTTATTTCATCGGAGATACTCCAATCCCGTTATTTCTGAG
63 ACCCCAGTTATTTCATCGGAGATACTCCAACCCCGTTATTTCCGAA
* * *
2083043 GGGATACTCCAACCCCAATTTTATTTCTAAAATACCTATTTTTCACAATCGGGGATACTCCAAC
1 GGGATACTCCAACCCCAACTTTATATCTAAAATACCTATTTTTCATAATCGGGGATACTCCAAC
2083107 TTCGATTTTA
Statistics
Matches: 142, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
107 38 0.27
108 14 0.10
109 64 0.45
110 26 0.18
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (108 bp):
GGGATACTCCAACCCCAACTTTATATCTAAAATACCTATTTTTCATAATCGGGGATACTCCAACC
CCAGTTATTTCATCGGAGATACTCCAACCCCGTTATTTCCGAA
Found at i:2083048 original size:28 final size:28
Alignment explanation
Indices: 2082986--2083054 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
2082976 TTTCATAATC
* *
2082986 GGGGGTACTCCAATCCCGTTATTTCATC
1 GGGGATACTCCAATCCCGTTATTTCATA
*
2083014 GGAGATACTCCAATCCCGTTATTTC-TGA
1 GGGGATACTCCAATCCCGTTATTTCAT-A
2083042 GGGGATACTCCAA
1 GGGGATACTCCAA
2083055 CCCCAATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
27 1 0.03
28 35 0.97
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.29
Consensus pattern (28 bp):
GGGGATACTCCAATCCCGTTATTTCATA
Found at i:2083100 original size:51 final size:50
Alignment explanation
Indices: 2083042--2083210 Score: 169
Period size: 51 Copynumber: 3.3 Consensus size: 50
2083032 TTATTTCTGA
* *
2083042 GGGGATACTCCAACCCCAATTTTATTTCTAAAATACCTATTTTTCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAATA-CTATTTTTCATAATC
** * * *
2083093 GGGGATACTCCAACTTCGATTTTATTTCCAAAATATTGATTTCTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAATACT-ATTTTTCATAATC
** ** * *
2083144 GGGGATACTTTAACCCCGACCTTACTTCT-AAATCATCAATTTTTCATAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAAT-A-CTATTTTTCATAATC
*
2083195 AGGGATACTCCAACCC
1 GGGGATACTCCAACCC
2083211 TGTCATTTCC
Statistics
Matches: 94, Mismatches: 21, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
50 5 0.05
51 89 0.95
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.34
Consensus pattern (50 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAATACTATTTTTCATAATC
Found at i:2098135 original size:20 final size:20
Alignment explanation
Indices: 2098088--2098140 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
2098078 GCCAATGACC
*
2098088 TGTATCGATACATCCTTTTCA
1 TGTATCGATACAT-CTTGTCA
*
2098109 AGTATCGATACAT-TTGGTCA
1 TGTATCGATACATCTT-GTCA
2098129 TGTATCGATACA
1 TGTATCGATACA
2098141 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 2 0.07
20 14 0.50
21 12 0.43
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATCTTGTCA
Found at i:2098146 original size:13 final size:13
Alignment explanation
Indices: 2098128--2098152 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2098118 ACATTTGGTC
2098128 ATGTATCGATACA
1 ATGTATCGATACA
2098141 ATGTATCGATAC
1 ATGTATCGATAC
2098153 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2098806 original size:77 final size:77
Alignment explanation
Indices: 2098699--2098866 Score: 309
Period size: 77 Copynumber: 2.2 Consensus size: 77
2098689 TTTCTTATCT
*
2098699 CTCCCCCTTAGTCAAATAAAAATTTCTCCCCCTTAAAAAAGCAATTTAACAATAAATTTTTAATC
1 CTCCCCCTTAATCAAATAAAAATTTCTCCCCCTTAAAAAAGCAATTTAACAATAAATTTTTAATC
2098764 ACATATTTCTTA
66 ACATATTTCTTA
* *
2098776 CTCCCCCTTAATCAAATAAAAATTTCTCCCCTTTAATAAAGCAATTTAACAATAAATTTTTAATC
1 CTCCCCCTTAATCAAATAAAAATTTCTCCCCCTTAAAAAAGCAATTTAACAATAAATTTTTAATC
2098841 ACATATTTCTTA
66 ACATATTTCTTA
2098853 CTCCCCCTTAATCA
1 CTCCCCCTTAATCA
2098867 TAAATTTATT
Statistics
Matches: 88, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 88 1.00
ACGTcount: A:0.38, C:0.25, G:0.02, T:0.36
Consensus pattern (77 bp):
CTCCCCCTTAATCAAATAAAAATTTCTCCCCCTTAAAAAAGCAATTTAACAATAAATTTTTAATC
ACATATTTCTTA
Found at i:2100216 original size:21 final size:21
Alignment explanation
Indices: 2100185--2100236 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
2100175 GCGGCTAGTG
* *
2100185 TGGGGGCTGCCCGATTGTGACC
1 TGGGGG-TGCCCGATCGCGACC
2100207 TGGGGGTG-CCGATCGCGACC
1 TGGGGGTGCCCGATCGCGACC
2100227 TGGTGGGTGC
1 TGG-GGGTGC
2100237 TTCCTAGGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 13 0.50
21 7 0.27
22 6 0.23
ACGTcount: A:0.08, C:0.25, G:0.46, T:0.21
Consensus pattern (21 bp):
TGGGGGTGCCCGATCGCGACC
Found at i:2100529 original size:20 final size:21
Alignment explanation
Indices: 2100500--2100540 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
2100490 TGTTTTTGAT
2100500 GATGATTTTG-A-TGAAAAAC
1 GATGATTTTGAAGTGAAAAAC
2100519 GATGTATTTTGAAGTGAAAAAC
1 GATG-ATTTTGAAGTGAAAAAC
2100541 AAGAATTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 6 0.32
21 1 0.05
22 8 0.42
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (21 bp):
GATGATTTTGAAGTGAAAAAC
Found at i:2100690 original size:13 final size:13
Alignment explanation
Indices: 2100672--2100710 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
2100662 ATAATCCCCT
2100672 TGTATCGATACAG
1 TGTATCGATACAG
*
2100685 TGTATCGATACAA
1 TGTATCGATACAG
*
2100698 TGTATTGATACAG
1 TGTATCGATACAG
2100711 AGAATGCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:2104282 original size:18 final size:18
Alignment explanation
Indices: 2104259--2104297 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
2104249 CATGTTTTTA
2104259 GGTACCCAAATTTTCTTG
1 GGTACCCAAATTTTCTTG
2104277 GGTACCCAAATTTTCTTG
1 GGTACCCAAATTTTCTTG
2104295 GGT
1 GGT
2104298 CATATGCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (18 bp):
GGTACCCAAATTTTCTTG
Found at i:2104390 original size:148 final size:148
Alignment explanation
Indices: 2104147--2104427 Score: 562
Period size: 148 Copynumber: 1.9 Consensus size: 148
2104137 TCTTGCCTCT
2104147 GGTCATATGCCTTGAGCATCCACTATCAAGGTACCAACAATTCTTCTTTGATTCTCTTGCCTTGT
1 GGTCATATGCCTTGAGCATCCACTATCAAGGTACCAACAATTCTTCTTTGATTCTCTTGCCTTGT
2104212 AGCAATGCTCCACCTCCTACAATTACAAGGATCAAATCATGTTTTTAGGTACCCAAATTTTCTTG
66 AGCAATGCTCCACCTCCTACAATTACAAGGATCAAATCATGTTTTTAGGTACCCAAATTTTCTTG
2104277 GGTACCCAAATTTTCTTG
131 GGTACCCAAATTTTCTTG
2104295 GGTCATATGCCTTGAGCATCCACTATCAAGGTACCAACAATTCTTCTTTGATTCTCTTGCCTTGT
1 GGTCATATGCCTTGAGCATCCACTATCAAGGTACCAACAATTCTTCTTTGATTCTCTTGCCTTGT
2104360 AGCAATGCTCCACCTCCTACAATTACAAGGATCAAATCATGTTTTTAGGTACCCAAATTTTCTTG
66 AGCAATGCTCCACCTCCTACAATTACAAGGATCAAATCATGTTTTTAGGTACCCAAATTTTCTTG
2104425 GGT
131 GGT
2104428 CCTTTTTCGT
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
148 133 1.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.35
Consensus pattern (148 bp):
GGTCATATGCCTTGAGCATCCACTATCAAGGTACCAACAATTCTTCTTTGATTCTCTTGCCTTGT
AGCAATGCTCCACCTCCTACAATTACAAGGATCAAATCATGTTTTTAGGTACCCAAATTTTCTTG
GGTACCCAAATTTTCTTG
Found at i:2106955 original size:13 final size:13
Alignment explanation
Indices: 2106937--2106961 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2106927 ACGTTTGGTC
2106937 ATGTATCGATACA
1 ATGTATCGATACA
2106950 ATGTATCGATAC
1 ATGTATCGATAC
2106962 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2111131 original size:13 final size:13
Alignment explanation
Indices: 2111095--2111132 Score: 60
Period size: 12 Copynumber: 3.0 Consensus size: 13
2111085 ACAATATTCT
2111095 TTGTATCGATACA
1 TTGTATCGATACA
*
2111108 TCGTATC-ATACA
1 TTGTATCGATACA
2111120 TTGTATCGATACA
1 TTGTATCGATACA
2111133 AAGGTTACTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2111264 original size:21 final size:22
Alignment explanation
Indices: 2111240--2111289 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
2111230 ATCAAATCTT
* *
2111240 CTTCAAATTTCTT-ATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
2111261 CTTCAAAATACTTCATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
2111283 --TCAAAAT
1 CTTCAAAAT
2111290 CATCAGCAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 7 0.27
21 11 0.42
22 8 0.31
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (22 bp):
CTTCAAAATACTTCATTTTTCA
Found at i:2113023 original size:31 final size:31
Alignment explanation
Indices: 2112985--2113068 Score: 115
Period size: 28 Copynumber: 2.9 Consensus size: 31
2112975 AATTAAATTT
*
2112985 TTATCAAGAGGGAGAAAATCTTTTTAATCGA
1 TTATCAAGAGGGAGAAAATCTTTTTAACCGA
2113016 TTATC-A-A-GGAGAAAATCTTTTTAACCGA
1 TTATCAAGAGGGAGAAAATCTTTTTAACCGA
*
2113044 TTATCAAGGGGGAG-AAAT-TTTTTAA
1 TTATCAAGAGGGAGAAAATCTTTTTAA
2113069 AGGGAAAATT
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
28 25 0.52
29 9 0.19
30 5 0.10
31 9 0.19
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (31 bp):
TTATCAAGAGGGAGAAAATCTTTTTAACCGA
Found at i:2113079 original size:16 final size:17
Alignment explanation
Indices: 2113053--2113084 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
2113043 ATTATCAAGG
2113053 GGGAGAAATTTTTTAAA
1 GGGAGAAATTTTTTAAA
2113070 GGGA-AAATTTTTTAA
1 GGGAGAAATTTTTTAA
2113085 TGAGAGCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
GGGAGAAATTTTTTAAA
Found at i:2113767 original size:33 final size:33
Alignment explanation
Indices: 2113712--2113776 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
2113702 TACCACTGTT
*
2113712 TGTATCGATACATGGCATATTGTATTGATACAA
1 TGTATCGATACATGGCATATTGTATCGATACAA
2113745 TGTATCGATACAT-G-ATGAATTGTATCGATACA
1 TGTATCGATACATGGCAT--ATTGTATCGATACA
2113777 TTGCTTCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 2 0.07
32 1 0.03
33 26 0.90
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.35
Consensus pattern (33 bp):
TGTATCGATACATGGCATATTGTATCGATACAA
Found at i:2117800 original size:20 final size:20
Alignment explanation
Indices: 2117774--2117825 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
2117764 AAAAAGATAG
*
2117774 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* * *
2117794 CATGTATCCATACATTGAAA
1 AATGTATCGATACATTCAAA
2117814 AATGTATCGATA
1 AATGTATCGATA
2117826 TATCTTGGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:2117858 original size:70 final size:71
Alignment explanation
Indices: 2117739--2117878 Score: 210
Period size: 70 Copynumber: 2.0 Consensus size: 71
2117729 ATGTATCTGG
* * * *
2117739 GAAAAATGTATCGATACATCTGGGTAAAAAGATAGAATGTATCGATACATTCATACATGTATCCA
1 GAAAAATGTATCGATACATCTGGGTAAAAAGATAAAATGTATCGATACATTAAAAAATGTATCCA
2117804 TACATT
66 TACATT
* * *
2117810 GAAAAATGTATCGATATATCTTGGT-AAAAGATAAAATGTATCGATACATTAAAAAATGTATCGA
1 GAAAAATGTATCGATACATCTGGGTAAAAAGATAAAATGTATCGATACATTAAAAAATGTATCCA
2117874 TACAT
66 TACAT
2117879 CTAGGTAAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
70 39 0.63
71 23 0.37
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (71 bp):
GAAAAATGTATCGATACATCTGGGTAAAAAGATAAAATGTATCGATACATTAAAAAATGTATCCA
TACATT
Found at i:2119809 original size:155 final size:157
Alignment explanation
Indices: 2119231--2119873 Score: 723
Period size: 156 Copynumber: 4.1 Consensus size: 157
2119221 ATGCTACACC
* * * * *
2119231 TAAAAGACTTAAAAAGGACTATAAAAGGG-TGAACATATCCCAAATACCCACCTTCGACATAAAA
1 TAAAGGACTTAAAAA-GACTAGAAAAGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAA
* * * *
2119295 GTGGACCCGGTGACAACTTAGAACT-TAGTTCTAAGAAATTACGAAAATGCAC-CTATGGGTATA
65 GCGGACCCGGTGACAACTTAGGACTCGAGTTCTAAGAAATTACAAAAATGC-CTCTATGGGTATA
*
2119358 CCTTCGACGTAAAAGTACCCCAGCAACCC
129 CCTTCGACGTAAAAGTACCCCAGCAACCT
* *
2119387 TAAAGGACCTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATACCCACTTTCGGCATAAAAG
1 TAAAGGACTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAG
* * * * * *
2119452 CTGACCCGGTGACAACTTAAGACTTG-GTTCTAAGAAATTACAAAAATGCCCCTATAGGTATATC
66 CGGACCCGGTGACAACTTAGGACTCGAGTTCTAAGAAATTACAAAAATGCCTCTATGGGTATACC
* *
2119516 TTCAACATAAAAGTACCCC-GACAACCT
131 TTCGACGTAAAAGTACCCCAG-CAACCT
* * * *
2119543 TAAAGGACCTAAAAGGACTAGAAAAGGGATAAACCTATCCTAAATGCCCACCTTCGGCATAAAAG
1 TAAAGGACTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAG
* *** * * *
2119608 CAGACCTAATGACAACTTAGGACTC-AGTTTTAAGAAATTACGAAAATGCCTCTATGTGTATACC
66 CGGACCCGGTGACAACTTAGGACTCGAGTTCTAAGAAATTACAAAAATGCCTCTATGGGTATACC
* * * * *
2119672 TTCGATGCAAAAGTACCTCGGTAACCT
131 TTCGACGTAAAAGTACCCCAGCAACCT
* * *
2119699 TAAAGGACTTAAAAAGACTAGAAAAAGG-TTAACCTATCCTAAATACCCACCTTCGGCATAAAAT
1 TAAAGGACTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAG
* * * ** *
2119763 CGGACTCGGTGATAACCTAGGACTCGA-TTCTGAA-AAATTACAAAAAT-ATTCCTA-GGGAATA
66 CGGACCCGGTGACAACTTAGGACTCGAGTTCT-AAGAAATTACAAAAATGCCT-CTATGGGTATA
* *
2119824 CCTTCGACGTAAATGTACCCCAGTAACCT
129 CCTTCGACGTAAAAGTACCCCAGCAACCT
*
2119853 TAAAAGACTTAAAAAGGACTA
1 TAAAGGACTTAAAAA-GACTA
2119874 TAAACCTGAG
Statistics
Matches: 412, Mismatches: 65, Indels: 21
0.83 0.13 0.04
Matches are distributed among these distances:
154 44 0.11
155 88 0.21
156 279 0.68
157 1 0.00
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (157 bp):
TAAAGGACTTAAAAAGACTAGAAAAGGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAG
CGGACCCGGTGACAACTTAGGACTCGAGTTCTAAGAAATTACAAAAATGCCTCTATGGGTATACC
TTCGACGTAAAAGTACCCCAGCAACCT
Found at i:2121004 original size:23 final size:22
Alignment explanation
Indices: 2120978--2121026 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
2120968 AAGCAAGGCT
2120978 TCCTAATTTTTCTCTCTATTTTC
1 TCCTAATTTTTCTCTCT-TTTTC
** * *
2121001 TCCTTTTTTTTCTTTCTTTTTT
1 TCCTAATTTTTCTCTCTTTTTC
2121023 TCCT
1 TCCT
2121027 TTTTTTTGTC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.69
Consensus pattern (22 bp):
TCCTAATTTTTCTCTCTTTTTC
Found at i:2121011 original size:12 final size:12
Alignment explanation
Indices: 2120996--2121054 Score: 54
Period size: 11 Copynumber: 5.1 Consensus size: 12
2120986 TTTCTCTCTA
2120996 TTTTCTCCTTTT
1 TTTTCTCCTTTT
2121008 TTTTCT--TTCTT
1 TTTTCTCCTT-TT
2121019 TTTT-TCCTTTT
1 TTTTCTCCTTTT
*
2121030 TTTTGT-CTTTT
1 TTTTCTCCTTTT
*
2121041 CTTTCTCCCTTTT
1 TTTTCT-CCTTTT
2121054 T
1 T
2121055 CACCTGAACC
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
10 3 0.08
11 21 0.55
12 9 0.24
13 5 0.13
ACGTcount: A:0.00, C:0.22, G:0.02, T:0.76
Consensus pattern (12 bp):
TTTTCTCCTTTT
Found at i:2121021 original size:13 final size:13
Alignment explanation
Indices: 2121003--2121044 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
2120993 CTATTTTCTC
*
2121003 CTTTTTTTTCTTT
1 CTTTTTTTCCTTT
2121016 CTTTTTTTCCTTT
1 CTTTTTTTCCTTT
* *
2121029 -TTTTTGTCTTTT
1 CTTTTTTTCCTTT
2121041 CTTT
1 CTTT
2121045 CTCCCTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.81
Consensus pattern (13 bp):
CTTTTTTTCCTTT
Found at i:2121023 original size:24 final size:25
Alignment explanation
Indices: 2120996--2121044 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
2120986 TTTCTCTCTA
2120996 TTTTCTCCTTTTTTT-TC-TTTCTTT
1 TTTTC-CCTTTTTTTGTCTTTTCTTT
*
2121020 TTTTCCTTTTTTTTGTCTTTTCTTT
1 TTTTCCCTTTTTTTGTCTTTTCTTT
2121045 CTCCCTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 8 0.36
24 7 0.32
25 7 0.32
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (25 bp):
TTTTCCCTTTTTTTGTCTTTTCTTT
Found at i:2121033 original size:22 final size:23
Alignment explanation
Indices: 2120984--2121033 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
2120974 GGCTTCCTAA
2120984 TTTTTCTCTCTATTTTCTCCTTT
1 TTTTTCTCTCTATTTTCTCCTTT
* *
2121007 TTTTTCTTTCT-TTTTTTCCTTT
1 TTTTTCTCTCTATTTTCTCCTTT
2121029 TTTTT
1 TTTTT
2121034 GTCTTTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 15 0.60
23 10 0.40
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTTCTCTCTATTTTCTCCTTT
Found at i:2121237 original size:278 final size:280
Alignment explanation
Indices: 2120866--2121428 Score: 1015
Period size: 283 Copynumber: 2.0 Consensus size: 280
2120856 AACTTGATAA
* * *
2120866 CCACAACAAATATACACGCTGATACTGATGAACAATACACAAACTAACAACAAAATGAAGCTAAG
1 CCACAACAAATATACACGCTGATACGGATGAAAAATACACAAACTAACAACAAAATAAAGCTAAG
2120931 AAATAAATATACCTTGGTTGAATTTAATAGAGGC-AAAA-AGCAAGGCTTCCTAATTTTTCTCTC
66 AAATAAATATACCTTGGTTGAATTTAATAGAGGCAAAAACAGCAAGGCTTCCTAATTTTTCTCTC
2120994 TATTTTCTCCTTTTTTTTCTTTCTTTTTTTCC-TTTTTTTTGTCTTTTCTTTCTCCCTTTTTCAC
131 TATTTTCTCC-TTTTTTTCTTTCTTTTTTTCCTTTTTTTTTGTCTTTTCTTTCTCCCTTTTTCAC
*
2121058 CTGAACCAAAGCTAAAAATCTTCTCTCAAAAATGGAGGATAGGGACGGCAAAATGAGTGCTGAAA
195 CTGAACCAAAGCTAAAAATCTTCTCTCAAAAATGGAGGATACGGACGGCAAAATGAGTGCTGAAA
*
2121123 ATGGTCTTCCTGTGAGCTTTT
260 ATGGTCTTCCTATGAGCTTTT
*
2121144 CCACAACAAATATACACGCTGATACGGATGAAAAATACACAAACTAACAGCAAAATAAAGCTAAG
1 CCACAACAAATATACACGCTGATACGGATGAAAAATACACAAACTAACAACAAAATAAAGCTAAG
2121209 AAATAAATATACCTTGGTTGAATTTAATAGAGGCAAAAACTAGCAAGGCTTCCTAATTTTTCTCT
66 AAATAAATATACCTTGGTTGAATTTAATAGAGGCAAAAAC-AGCAAGGCTTCCTAATTTTTCTCT
2121274 CTATTTTCTCCTTTTTTTCTTTCTTTTTTTCCTTTTTTTTTTTGTCTTTTCTTTCTCCCTTTTTC
130 CTATTTTCTCCTTTTTTTCTTTCTTTTTTTCC--TTTTTTTTTGTCTTTTCTTTCTCCCTTTTTC
2121339 ACCTGAACCAAAGCTAAAAATCTTCTCTCAAAAATGGAGGATACGGACGGCAAAATGAGTGCTGA
193 ACCTGAACCAAAGCTAAAAATCTTCTCTCAAAAATGGAGGATACGGACGGCAAAATGAGTGCTGA
2121404 AAATGGTCTTCCTATGAGCTTTT
258 AAATGGTCTTCCTATGAGCTTTT
2121427 CC
1 CC
2121429 TAAAGCCTTC
Statistics
Matches: 273, Mismatches: 6, Indels: 7
0.95 0.02 0.02
Matches are distributed among these distances:
278 95 0.35
279 4 0.01
280 21 0.08
281 35 0.13
283 118 0.43
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (280 bp):
CCACAACAAATATACACGCTGATACGGATGAAAAATACACAAACTAACAACAAAATAAAGCTAAG
AAATAAATATACCTTGGTTGAATTTAATAGAGGCAAAAACAGCAAGGCTTCCTAATTTTTCTCTC
TATTTTCTCCTTTTTTTCTTTCTTTTTTTCCTTTTTTTTTGTCTTTTCTTTCTCCCTTTTTCACC
TGAACCAAAGCTAAAAATCTTCTCTCAAAAATGGAGGATACGGACGGCAAAATGAGTGCTGAAAA
TGGTCTTCCTATGAGCTTTT
Found at i:2121299 original size:12 final size:12
Alignment explanation
Indices: 2121284--2121329 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
2121274 CTATTTTCTC
2121284 CTTTTTTTCTTT
1 CTTTTTTTCTTT
2121296 CTTTTTTTCCTTT
1 CTTTTTTT-CTTT
*
2121309 -TTTTTTT-TGT
1 CTTTTTTTCTTT
2121319 CTTTTCTTTCT
1 CTTTT-TTTCT
2121330 CCCTTTTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
10 2 0.07
11 4 0.14
12 18 0.62
13 5 0.17
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.80
Consensus pattern (12 bp):
CTTTTTTTCTTT
Found at i:2121303 original size:13 final size:13
Alignment explanation
Indices: 2121285--2121327 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
2121275 TATTTTCTCC
2121285 TTTTTTTCTTTCT
1 TTTTTTTCTTTCT
* *
2121298 TTTTTTCCTTTTT
1 TTTTTTTCTTTCT
2121311 TTTTTTGTCTTTTCT
1 TTTTTT-TC-TTTCT
2121326 TT
1 TT
2121328 CTCCCTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 17 0.71
14 1 0.04
15 6 0.25
ACGTcount: A:0.00, C:0.14, G:0.02, T:0.84
Consensus pattern (13 bp):
TTTTTTTCTTTCT
Found at i:2121323 original size:21 final size:22
Alignment explanation
Indices: 2121265--2121325 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
2121255 GGCTTCCTAA
* *
2121265 TTTTTCTCTCTATTTTCTCCTT
1 TTTTTCTTTCTCTTTTCTCCTT
*
2121287 TTTTTCTTTCT-TTTTTTCCTT
1 TTTTTCTTTCTCTTTTCTCCTT
* *
2121308 TTTTTTTTTGTCTTTTCT
1 TTTTTCTTTCTCTTTTCT
2121326 TTCTCCCTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 18 0.55
22 15 0.45
ACGTcount: A:0.02, C:0.20, G:0.02, T:0.77
Consensus pattern (22 bp):
TTTTTCTTTCTCTTTTCTCCTT
Found at i:2122691 original size:13 final size:13
Alignment explanation
Indices: 2122673--2122700 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2122663 TACATAAAGT
2122673 ATTGTATCGATAC
1 ATTGTATCGATAC
2122686 ATTGTATCGATAC
1 ATTGTATCGATAC
2122699 AT
1 AT
2122701 ATTTTTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.39
Consensus pattern (13 bp):
ATTGTATCGATAC
Found at i:2122696 original size:33 final size:33
Alignment explanation
Indices: 2122654--2122719 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
2122644 TTTCAACGAT
2122654 TTGTATCGATACATAAAGTATTGTATCGATACA
1 TTGTATCGATACATAAAGTATTGTATCGATACA
*** *
2122687 TTGTATCGATACATATTTTTTTGTATCGATACA
1 TTGTATCGATACATAAAGTATTGTATCGATACA
2122720 ATTTAAGCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (33 bp):
TTGTATCGATACATAAAGTATTGTATCGATACA
Found at i:2122780 original size:13 final size:13
Alignment explanation
Indices: 2122762--2122787 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2122752 ATTACTCAAA
2122762 TGTATCGATACAT
1 TGTATCGATACAT
2122775 TGTATCGATACAT
1 TGTATCGATACAT
2122788 GCAGGCAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2122853 original size:52 final size:52
Alignment explanation
Indices: 2122775--2122903 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
2122765 ATCGATACAT
*
2122775 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
2122827 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
2122879 TGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACATGCAGGCAAATTT
2122904 TCATATTTCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:2125463 original size:13 final size:13
Alignment explanation
Indices: 2125445--2125470 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2125435 TACACCAAGT
2125445 ATGTATCGATACA
1 ATGTATCGATACA
2125458 ATGTATCGATACA
1 ATGTATCGATACA
2125471 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2125468 original size:32 final size:33
Alignment explanation
Indices: 2125427--2125490 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
2125417 TAGCCAAACT
* **
2125427 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
2125459 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
2125491 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:2125991 original size:34 final size:35
Alignment explanation
Indices: 2125928--2125994 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2125918 CTAAGTGATT
2125928 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
2125964 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
2125995 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:2128910 original size:13 final size:13
Alignment explanation
Indices: 2128892--2128918 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2128882 ATTTTTCCAG
2128892 AATGTATCGATAC
1 AATGTATCGATAC
2128905 AATGTATCGATAC
1 AATGTATCGATAC
2128918 A
1 A
2128919 TTGCTTCAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:2130710 original size:13 final size:13
Alignment explanation
Indices: 2130692--2130717 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2130682 TACACCAAGT
2130692 ATGTATCGATACA
1 ATGTATCGATACA
2130705 ATGTATCGATACA
1 ATGTATCGATACA
2130718 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2130715 original size:32 final size:33
Alignment explanation
Indices: 2130674--2130737 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
2130664 TAGCCAAACT
* **
2130674 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
2130706 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
2130738 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:2131238 original size:34 final size:35
Alignment explanation
Indices: 2131175--2131241 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2131165 CTAAGTGATT
2131175 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
2131211 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
2131242 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:2132454 original size:34 final size:33
Alignment explanation
Indices: 2132410--2132525 Score: 108
Period size: 34 Copynumber: 3.4 Consensus size: 33
2132400 GGAAGAGAAC
*
2132410 AAGTTAAAAGAGTCGAACATGCATCTTTCTAAAT
1 AAGTTAAAAGAGTCAAACATG-ATCTTTCTAAAT
* * * * *
2132444 AAGTTGAAAGACTCAAACTTGATTCCTTCCAAAT
1 AAGTTAAAAGAGTCAAACATGA-TCTTTCTAAAT
* *
2132478 AAGTTAAAAGAGTCAAACTTATG-TCTTTCTGAAC
1 AAGTTAAAAGAGTCAAAC--ATGATCTTTCTAAAT
*
2132512 AAGTTCAAAGAGTC
1 AAGTTAAAAGAGTC
2132526 TAACTTCTGT
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
33 1 0.02
34 62 0.95
36 2 0.03
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (33 bp):
AAGTTAAAAGAGTCAAACATGATCTTTCTAAAT
Found at i:2134378 original size:19 final size:19
Alignment explanation
Indices: 2134350--2134412 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
2134340 AAACAGTAAC
*
2134350 TGTATTGATACATAAGTGT
1 TGTATCGATACATAAGTGT
2134369 TGTATCGATAC--AA----
1 TGTATCGATACATAAGTGT
2134382 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
2134401 TGTATCGATACA
1 TGTATCGATACA
2134413 ATGTATCGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 11 0.30
15 2 0.05
17 2 0.05
19 22 0.59
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:2134387 original size:13 final size:13
Alignment explanation
Indices: 2134369--2134426 Score: 62
Period size: 13 Copynumber: 4.0 Consensus size: 13
2134359 ACATAAGTGT
2134369 TGTATCGATACAA
1 TGTATCGATACAA
2134382 TGTATCGATACATAA
1 TGTATCGATAC--AA
2134397 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
2134414 TGTATCGATACAA
1 TGTATCGATACAA
2134427 AGCTACTATC
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 24 0.62
15 2 0.05
17 2 0.05
19 11 0.28
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2134392 original size:32 final size:32
Alignment explanation
Indices: 2134350--2134489 Score: 144
Period size: 32 Copynumber: 4.4 Consensus size: 32
2134340 AAACAGTAAC
*
2134350 TGTATTGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
2134382 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* ** * *
2134414 TGTATCGATACA-AAG-CTACTATCAAGGA-AA
1 TGTATCGATACATAAGTGTTGTATCGA-TACAA
* * *
2134444 TGTATCGATACATTACT-TAATGTATCGATACAT
1 TGTATCGATACATAAGTGT--TGTATCGATACAA
2134477 TGTATCGATACAT
1 TGTATCGATACAT
2134490 TGATCTTTGT
Statistics
Matches: 89, Mismatches: 13, Indels: 11
0.79 0.12 0.10
Matches are distributed among these distances:
30 20 0.22
31 6 0.07
32 44 0.49
33 19 0.21
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:2134482 original size:13 final size:13
Alignment explanation
Indices: 2134464--2134491 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2134454 CATTACTTAA
2134464 TGTATCGATACAT
1 TGTATCGATACAT
2134477 TGTATCGATACAT
1 TGTATCGATACAT
2134490 TG
1 TG
2134492 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2134486 original size:33 final size:33
Alignment explanation
Indices: 2134444--2134510 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 33
2134434 ATCAAGGAAA
2134444 TGTATCGATACATT-A-CTTAATGTATCGATACAT
1 TGTATCGATACATTGATCTT--TGTATCGATACAT
2134477 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCTTTGTATCGATACAT
2134510 T
1 T
2134511 TGGAAATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 28 0.88
34 1 0.03
35 3 0.09
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTGATCTTTGTATCGATACAT
Found at i:2141238 original size:32 final size:32
Alignment explanation
Indices: 2141192--2141255 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
2141182 AAAAAGTAAA
2141192 AAACCAAGACTTAACTAGAACCTAATCTTGAC
1 AAACCAAGACTTAACTAGAACCTAATCTTGAC
*
2141224 AAACTAAGACTTAACTAGAACCTAATCTTGAC
1 AAACCAAGACTTAACTAGAACCTAATCTTGAC
2141256 GAAAAAGACC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.44, C:0.23, G:0.09, T:0.23
Consensus pattern (32 bp):
AAACCAAGACTTAACTAGAACCTAATCTTGAC
Found at i:2146378 original size:13 final size:13
Alignment explanation
Indices: 2146360--2146390 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2146350 ACAATTCATC
2146360 ATGTATCAATACA
1 ATGTATCAATACA
*
2146373 ATGTATCGATACA
1 ATGTATCAATACA
2146386 ATGTA
1 ATGTA
2146391 CCATGTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (13 bp):
ATGTATCAATACA
Found at i:2146380 original size:33 final size:33
Alignment explanation
Indices: 2146338--2146403 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
2146328 CCATTAGAGG
*
2146338 CAATGTATCGATACAAT-TCATCATGTATCAATA
1 CAATGTATCGATACAATGT-ACCATGTATCAATA
2146371 CAATGTATCGATACAATGTACCATGTATCAATA
1 CAATGTATCGATACAATGTACCATGTATCAATA
2146404 TAAATAGTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (33 bp):
CAATGTATCGATACAATGTACCATGTATCAATA
Found at i:2146460 original size:20 final size:19
Alignment explanation
Indices: 2146434--2146507 Score: 94
Period size: 20 Copynumber: 3.8 Consensus size: 19
2146424 ACTGCCAGTT
2146434 TCATGTATCGATACAATTA
1 TCATGTATCGATACAATTA
*
2146453 TCCATGTATCGATACAATGA
1 T-CATGTATCGATACAATTA
* *
2146473 ACATGTATCGATACAAAGTA
1 TCATGTATCGATAC-AATTA
*
2146493 TAATGTATCGATACA
1 TCATGTATCGATACA
2146508 TCTGGGTGTG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 15 0.32
20 32 0.68
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (19 bp):
TCATGTATCGATACAATTA
Found at i:2156226 original size:20 final size:20
Alignment explanation
Indices: 2156192--2156268 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
2156182 GTAAAAAGAC
*
2156192 AGAATGTAT-GAATACATTGA
1 AGAATGTATCG-ATACATTAA
* *
2156212 AGAATGTATCGATACATCCAT
1 AGAATGTATCGATACAT-TAA
*
2156233 A-CATGTATCGATACATTAA
1 AGAATGTATCGATACATTAA
*
2156252 AAAATGTATCGATACAT
1 AGAATGTATCGATACAT
2156269 CTGGGTAAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 2 0.04
20 43 0.91
21 2 0.04
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (20 bp):
AGAATGTATCGATACATTAA
Found at i:2159929 original size:52 final size:52
Alignment explanation
Indices: 2159844--2159968 Score: 214
Period size: 52 Copynumber: 2.4 Consensus size: 52
2159834 ATATGAAAAG
* *
2159844 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
* *
2159896 TTTCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
2159948 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
2159969 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:2159981 original size:52 final size:51
Alignment explanation
Indices: 2159844--2159989 Score: 204
Period size: 52 Copynumber: 2.8 Consensus size: 51
2159834 ATATGAAAAG
*
2159844 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* * *
2159896 TTTCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
2159948 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACAT
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACAT
2159990 TTGAGTAATG
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.02
52 82 0.98
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:2161146 original size:49 final size:49
Alignment explanation
Indices: 2160929--2161968 Score: 1307
Period size: 49 Copynumber: 21.7 Consensus size: 49
2160919 AAAAGGATGT
*
2160929 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * *
2160981 CGATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
2161024 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG-A-GTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
2161071 CAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
2161120 CAATGTGCTGAGTCAACGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
2161169 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
2161218 CAATGTGCTGAGTCAAGGCCAGCTACATTAGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
2161267 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
2161316 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
2161365 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
2161414 CAATGTGCTGAGTCAAGGCTAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
2161463 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
2161512 CAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAAGATGAGGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATGAAGGTGC
* * * * *
2161562 CAATATGCTGATTCAAGGCCAGCGATATTGGA-TT-----TGGAGTTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
2161605 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAATGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGC
* * * *
2161657 CAATATGCTAATTCAAGGCCAGCTATATTGGAGTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* *
2161700 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGTGT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
2161749 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
2161792 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * * *
2161841 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
* * *
2161890 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
*
2161933 CAATGTGCTGATTCAAGGCCAGCTACATTGGGCTTA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
2161969 GAAGGGTTGC
Statistics
Matches: 863, Mismatches: 94, Indels: 70
0.84 0.09 0.07
Matches are distributed among these distances:
43 186 0.22
44 2 0.00
45 1 0.00
47 46 0.05
48 4 0.00
49 516 0.60
50 42 0.05
52 66 0.08
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGC
Found at i:2162012 original size:33 final size:32
Alignment explanation
Indices: 2161961--2162039 Score: 126
Period size: 33 Copynumber: 2.5 Consensus size: 32
2161951 CCAGCTACAT
2161961 TGGGC-TT-AGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
*
2161991 TGGGCTTTAGAGAATGGTTGCCACCGACTTGTG
1 TGGGCTTT-GAGAAGGGTTGCCACCGACTTGTG
2162024 TGGGCTTTGAGAAGGG
1 TGGGCTTTGAGAAGGG
2162040 AGAAAGATGC
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
30 5 0.11
31 2 0.05
32 7 0.16
33 30 0.68
ACGTcount: A:0.18, C:0.16, G:0.38, T:0.28
Consensus pattern (32 bp):
TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
Found at i:2162073 original size:34 final size:36
Alignment explanation
Indices: 2162022--2163004 Score: 779
Period size: 34 Copynumber: 29.3 Consensus size: 36
2162012 CACCGACTTG
* * * *
2162022 TGTGGGCTTTGAGAAGGGAGAAAGA-TGCTACGAAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
*
2162058 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
2162093 TGTGGGCTTTAAAA-AGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
2162127 TGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
*
2162164 TGTGGGCTTTAAAA-AGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
2162198 TGTGGGCTTTAAAAAGGG---AA-AGTGCCACGGAAT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
* *
2162231 GGTGGGCTTTGAGAA-GG-AAAAG-GTTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAG-TGCCACGGAGT
*
2162266 TGTGGGCTTTAAAA-AGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
2162300 TGTGGACTTTAAAAAGGG---AA-AGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
* * *
2162333 GGTGGGCTTTGAGAA--GAAAAAG-GTTGCCACGGAAT
1 TGTGGGCTTT-AAAAGGGAAAAAGAG-TGCCACGGAGT
*
2162368 TGTGGGCTTTAAAA-AGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
2162402 TGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGT
* *
2162439 TATGGGCTTTAAAA-AG-AAAA-AGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* * * * *
2162472 GGTGGACTTTGAGAA--GAAAAAG-GTTGCCACAGAAT
1 TGTGGGCTTT-AAAAGGGAAAAAGAG-TGCCACGGAGT
*
2162507 TGTGGGCTTTAAAA--G-----G-GTGCCACGAAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
2162535 TGTGGAC-TTAAAA-GGAACAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
2162568 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
2162603 TGTGGGCTTTAAAA-AG-AAAA-AGTGCCATGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* * * *
2162636 GGTGGACTTTGAGAA--GAAAAAG-GTTGCCACGGAAT
1 TGTGGGCTTT-AAAAGGGAAAAAGAG-TGCCACGGAGT
*
2162671 TGTGGGCTTTAAAA--G-----G-GTGCCACGAAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* * *
2162699 TGTGGAC-TTAAAA-GGAACAAG-GTGCCACGAAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
2162732 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
2162767 TGTGGGCTTTAAAA-AGAAAAAG-GTGCCACGGAAT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
2162801 TGTGGGCTTT-GAA--GAAAAAG-GTTGCCACGGAAT
1 TGTGGGCTTTAAAAGGGAAAAAGAG-TGCCACGGAGT
*
2162834 TGTGGGCTTTAAAA--G-----G-GTGCCACGAAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
2162862 TGTGGAC-TTAAAA-GGAACAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
2162895 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
*
2162930 TGTGGGCTTTAGAAA--GAAAAAG-GTGCCACGGAAT
1 TGTGGGCTTTA-AAAGGGAAAAAGAGTGCCACGGAGT
*
2162964 TGTGGGCTTT-GAA--G-AAAAG-GTGCCACGGAGT
1 TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
* *
2162995 CGTGGACTTT
1 TGTGGGCTTT
2163005 GAGACAAAAT
Statistics
Matches: 806, Mismatches: 78, Indels: 131
0.79 0.08 0.13
Matches are distributed among these distances:
27 18 0.02
28 47 0.06
29 6 0.01
31 25 0.03
32 13 0.02
33 191 0.24
34 207 0.26
35 202 0.25
36 51 0.06
37 46 0.06
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (36 bp):
TGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGT
Found at i:2162277 original size:102 final size:100
Alignment explanation
Indices: 2162022--2163004 Score: 912
Period size: 102 Copynumber: 9.8 Consensus size: 100
2162012 CACCGACTTG
* * * * *
2162022 TGTGGGCTTTGAGAAGGGAGAAAGATGCTACGAAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCC
1 TGTGGGCTTT-AGAA-GGA-AAAGGTGCCACGGAGTTGTGGGCTTTAAAA-AGAAAAAG-GTGCC
**
2162086 ACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGT
61 ACGGAGTTGTGGGCTTTAAAAAGGGAAA-GTGCCACGGAGT
*
2162127 TGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCA
1 TGTGGGCTTT-AGAA-GG-AAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCA
*
2162192 CGGAGTTGTGGGCTTTAAAAAGGGAAAGTGCCACGGAAT
62 CGGAGTTGTGGGCTTTAAAAAGGGAAAGTGCCACGGAGT
*
2162231 GGTGGGCTTTGAGAAGGAAAAGGTTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACG
1 TGTGGGCTTT-AGAAGGAAAAGG-TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACG
*
2162296 GAGTTGTGGACTTTAAAAAGGGAAAGTGCCACGGAGT
64 GAGTTGTGGGCTTTAAAAAGGGAAAGTGCCACGGAGT
* * *
2162333 GGTGGGCTTTGAGAAGAAAAAGGTTGCCACGGAATTGTGGGCTTTAAAAAGAAAAAGGTGCCACG
1 TGTGGGCTTT-AGAAGGAAAAGG-TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACG
2162398 GAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGT
64 GAGTTGTGGGCTTTAAAAAGGG---AA-AGTGCCACGGAGT
* * * * * * * * *
2162439 TATGGGCTTTAAAAAGAAAAAGTGCCACGGAGTGGTGGACTTTGAGAAGAAAAAGGTTGCCACAG
1 TGTGGGCTTTAGAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGG-TGCCACGG
* *
2162504 AATTGTGGGCTTT-AAAA-GG---GTGCCACGAAGT
65 AGTTGTGGGCTTTAAAAAGGGAAAGTGCCACGGAGT
* * * *
2162535 TGTGGAC-TTAAAAGGAACAAGGTGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCAC
1 TGTGGGCTTTAGAAGGAA-AAGGTGCCACGGAGTTGTGGGCTTTAAAA-AGAAAAAG-GTGCCAC
** *
2162598 GGAGTTGTGGGCTTTAAAAAGAAAAAGTGCCATGGAGT
63 GGAGTTGTGGGCTTTAAAAAGGGAAAGTGCCACGGAGT
* * * *
2162636 GGTGGACTTTGAGAAGAAAAAGGTTGCCACGGAATTGTGGGCTTT-AAAAG-----GGTGCCACG
1 TGTGGGCTTT-AGAAGGAAAAGG-TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACG
* * * *
2162695 AAGTTGTGGAC-TT-AAAAGGAACAAGGTGCCACGAAGT
64 GAGTTGTGGGCTTTAAAAAGGGA-AA-GTGCCACGGAGT
* *
2162732 TGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC
1 TGTGGGCTTTAGAA-GG-AAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCAC
* * *
2162796 GGAATTGTGGGCTTTGAAGAAA---AAGGTTGCCACGGAAT
63 GGAGTTGTGGGCTTT-AA-AAAGGGAAAG-TGCCACGGAGT
* * * * *
2162834 TGTGGGCTTT---A--AAAGGGTGCCACGAAGTTGTGGAC-TTAAAAGGAACAAGGTGCCACGGA
1 TGTGGGCTTTAGAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGA
*
2162893 GTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGT
66 GTTGTGGGCTTTAAAAAGGG---AA-AGTGCCACGGAGT
* * *
2162930 TGTGGGCTTTAGAAAGAAAAAGGTGCCACGGAATTGTGGGCTTT--GAAG-AAAAGGTGCCACGG
1 TGTGGGCTTTAG-AAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGG
* *
2162992 AGTCGTGGACTTT
65 AGTTGTGGGCTTT
2163005 GAGACAAAAT
Statistics
Matches: 740, Mismatches: 85, Indels: 110
0.79 0.09 0.12
Matches are distributed among these distances:
90 3 0.00
91 1 0.00
93 2 0.00
94 39 0.05
95 37 0.05
96 146 0.20
97 13 0.02
100 24 0.03
101 22 0.03
102 225 0.30
103 36 0.05
104 58 0.08
105 81 0.11
106 47 0.06
107 6 0.01
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (100 bp):
TGTGGGCTTTAGAAGGAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGA
GTTGTGGGCTTTAAAAAGGGAAAGTGCCACGGAGT
Found at i:2162529 original size:28 final size:27
Alignment explanation
Indices: 2162489--2162583 Score: 84
Period size: 33 Copynumber: 3.3 Consensus size: 27
2162479 TTTGAGAAGA
* *
2162489 AAAAGGTTGCCACAGAA-TTGTGGGCTTT
1 AAAAGGGTGCCAC-GAAGTTGTGGAC-TT
2162517 AAAAGGGTGCCACGAAGTTGTGGACTT
1 AAAAGGGTGCCACGAAGTTGTGGACTT
*
2162544 AAAAGGAACAAGGTGCCACGGAGTTGTGGACTT
1 AAAA-G-----GGTGCCACGAAGTTGTGGACTT
2162577 AAAAGGG
1 AAAAGGG
2162584 AAAAAGAGTG
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
27 11 0.19
28 20 0.35
32 1 0.02
33 25 0.44
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.21
Consensus pattern (27 bp):
AAAAGGGTGCCACGAAGTTGTGGACTT
Found at i:2162611 original size:164 final size:163
Alignment explanation
Indices: 2162055--2162992 Score: 1225
Period size: 164 Copynumber: 5.6 Consensus size: 163
2162045 GATGCTACGA
2162055 AGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCC
1 AGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCC
* * *
2162120 ACGGAGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA
66 ACGGAGTTGTGGACTTT-AGAA--GAAAAAG-GTGCCACGGAATTGTGGGCTTT-AAAAG-----
* * *
2162185 GGTGCCACGGAGTTGTGGGCTTTAAAAAGGGA-AA-GTGCCACGG
121 GGTGCCACGAAGTTGTGGAC-TT-AAAAGGAACAAGGTGCCACGG
* * * *
2162228 AATGGTGGGCTTTGAGAA-GG-AAAAG-GTTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGT
1 AGTTGTGGAC-TT-AAAAGGGAAAAAGAG-TGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGT
* ** * *
2162290 GCCACGGAGTTGTGGACTTTAAAAAGGGAAA-GTGCCACGGAGTGGTGGGCTTTGAGAAGAAAAA
63 GCCACGGAGTTGTGGACTTT-AGAAGAAAAAGGTGCCACGGAATTGTGGGCTTT-------AAAA
* * * *
2162354 GGTTGCCACGGAA-TTGTGGGCTTTAAAAAGAAAAAGGTGCCACGG
120 GGGTGCCAC-GAAGTTGTGGAC-TTAAAAGGAACAAGGTGCCACGG
* *
2162399 AGTTGTGGGCTTTAAAAAGGGAAAAAGAGTGCCACGGAGTTATGGGCTTTAAAAAGAAAAA-GTG
1 AGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTG
* *
2162463 CCACGGAGTGGTGGACTTTGAGAAGAAAAAGGTTGCCACAGAATTGTGGGCTTTAAAAGGGTGCC
64 CCACGGAGTTGTGGACTTT-AGAAGAAAAAGG-TGCCACGGAATTGTGGGCTTTAAAAGGGTGCC
2162528 ACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCACGG
127 ACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCACGG
2162565 AGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAA-GTGCC
1 AGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCC
* *
2162629 ATGGAGTGGTGGACTTTGAGAAGAAAAAGGTTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCAC
66 ACGGAGTTGTGGACTTT-AGAAGAAAAAGG-TGCCACGGAATTGTGGGCTTTAAAAGGGTGCCAC
*
2162694 GAAGTTGTGGACTTAAAAGGAACAAGGTGCCACGA
129 GAAGTTGTGGACTTAAAAGGAACAAGGTGCCACGG
2162729 AGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCC
1 AGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCC
* *
2162794 ACGGAATTGTGGGCTTT-GAAGAAAAAGGTTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACG
66 ACGGAGTTGTGGACTTTAGAAGAAAAAGG-TGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACG
2162858 AAGTTGTGGACTTAAAAGGAACAAGGTGCCACGG
130 AAGTTGTGGACTTAAAAGGAACAAGGTGCCACGG
*
2162892 AGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAGAAAGAAAAAGGTGCC
1 AGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCC
* *
2162957 ACGGAATTGTGGGCTTT-GAAG-AAAAGGTGCCACGGA
66 ACGGAGTTGTGGACTTTAGAAGAAAAAGGTGCCACGGA
2162993 GTCGTGGACT
Statistics
Matches: 706, Mismatches: 40, Indels: 50
0.89 0.05 0.06
Matches are distributed among these distances:
161 9 0.01
162 6 0.01
163 165 0.23
164 207 0.29
165 20 0.03
166 33 0.05
167 19 0.03
169 27 0.04
170 20 0.03
171 29 0.04
172 31 0.04
173 108 0.15
174 23 0.03
175 9 0.01
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (163 bp):
AGTTGTGGACTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCC
ACGGAGTTGTGGACTTTAGAAGAAAAAGGTGCCACGGAATTGTGGGCTTTAAAAGGGTGCCACGA
AGTTGTGGACTTAAAAGGAACAAGGTGCCACGG
Found at i:2163025 original size:30 final size:29
Alignment explanation
Indices: 2162965--2163102 Score: 159
Period size: 31 Copynumber: 4.5 Consensus size: 29
2162955 CCACGGAATT
* * *
2162965 GTGGGCTTTGAAGAAAAGGTGCCACGGAGTC
1 GTGGACTTTG-AGAAAA-ATGCCACTGAGTC
2162996 GTGGACTTTGAGACAAAATGCCACTGAGTC
1 GTGGACTTTGAGA-AAAATGCCACTGAGTC
2163026 GTGGACTTTGAAGAAAAGGATGCCACTGAGTC
1 GTGGACTTTG-AGAAAA--ATGCCACTGAGTC
*
2163058 GTGGACTTTGAGAAGAGATTGCCACTGAGTC
1 GTGGACTTTGAGAA-A-AATGCCACTGAGTC
*
2163089 GTGGGCTTTGAGAA
1 GTGGACTTTGAGAA
2163103 GAGATTTGAA
Statistics
Matches: 96, Mismatches: 5, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
30 27 0.28
31 44 0.46
32 24 0.25
33 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.33, T:0.23
Consensus pattern (29 bp):
GTGGACTTTGAGAAAAATGCCACTGAGTC
Found at i:2163084 original size:31 final size:31
Alignment explanation
Indices: 2162984--2163108 Score: 166
Period size: 31 Copynumber: 4.0 Consensus size: 31
2162974 GAAGAAAAGG
* *
2162984 TGCCACGGAGTCGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTTGAGA-AGAGAT
*
2163014 TGCCACTGAGTCGTGGACTTTGAAGAAAAGGA-
1 TGCCACTGAGTCGTGGACTTTG-AGAAGA-GAT
2163046 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
*
2163077 TGCCACTGAGTCGTGGGCTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
2163108 T
1 T
2163109 TGAAGAATTG
Statistics
Matches: 87, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
30 24 0.28
31 40 0.46
32 22 0.25
33 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
Found at i:2164427 original size:35 final size:33
Alignment explanation
Indices: 2164378--2164448 Score: 106
Period size: 35 Copynumber: 2.1 Consensus size: 33
2164368 GCCTTTGCAC
*
2164378 TTTTTTTTTGTGTTTTTTTTTTGTTTTTTTGTTT
1 TTTTTTTTTGTGTTTTTTTTTTGTTTGTTT-TTT
*
2164412 TTTTTGTTTTTTGTTTTTTTTTTGTTTGTTTTTT
1 TTTTT-TTTTGTGTTTTTTTTTTGTTTGTTTTTT
2164446 TTT
1 TTT
2164449 CATCACTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 11 0.32
35 23 0.68
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (33 bp):
TTTTTTTTTGTGTTTTTTTTTTGTTTGTTTTTT
Found at i:2164461 original size:1 final size:1
Alignment explanation
Indices: 2164378--2164448 Score: 70
Period size: 1 Copynumber: 71.0 Consensus size: 1
2164368 GCCTTTGCAC
* * * * * * * *
2164378 TTTTTTTTTGTGTTTTTTTTTTGTTTTTTTGTTTTTTTTGTTTTTTGTTTTTTTTTTGTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2164443 TTTTTT
1 TTTTTT
2164449 CATCACTTTT
Statistics
Matches: 54, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (1 bp):
T
Found at i:2171397 original size:52 final size:52
Alignment explanation
Indices: 2171312--2171436 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
2171302 ATATGAAAAG
* *
2171312 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
2171364 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
2171416 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
2171437 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:2171449 original size:52 final size:51
Alignment explanation
Indices: 2171312--2171456 Score: 211
Period size: 52 Copynumber: 2.8 Consensus size: 51
2171302 ATATGAAAAG
*
2171312 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
2171364 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
2171416 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
2171457 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:2171463 original size:13 final size:13
Alignment explanation
Indices: 2171445--2171469 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2171435 CAAAGATCAG
2171445 TGTATCGATACAA
1 TGTATCGATACAA
2171458 TGTATCGATACA
1 TGTATCGATACA
2171470 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2172067 original size:28 final size:28
Alignment explanation
Indices: 2171980--2172605 Score: 689
Period size: 28 Copynumber: 21.9 Consensus size: 28
2171970 TAAAAAAAAA
* *
2171980 GGTGCCACTAACTTGTGTGGGCCTTGAAAAG
1 GGTGCCACTGAC-T-TGTGGGCTTTG-AAAG
* *
2172011 AGTTGCCACCGACTTGTGTGGGCTTTGAAAG
1 -GGTGCCACTGAC-T-TGTGGGCTTTGAAAG
* *
2172042 GGTACCACCGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
2172070 GGTGCACCACTAACTTGTGGGCTTTGAAAA
1 GGTG--CCACTGACTTGTGGGCTTTGAAAG
*
2172100 GGCGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
2172128 GGTACCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* ** * *
2172156 GGTGCCACTGACTTATGGGAATCGGAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
2172184 GGTGCCACTGACTTATGGGATTTGGAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
2172212 GGTGCCACTAACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
2172240 GGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
2172268 GGTGCCACTGACTTGTGGTCTTTTG-AAG
1 GGTGCCACTGACTTGTGGGC-TTTGAAAG
* *
2172296 AGATGCCACCGACTTGTGGGCTTTGAAAG
1 -GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
2172325 GATGCCACTGACTTGTGGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * * * *
2172353 GATTCCACTAACGTGTGGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
2172381 GGTGCCACTGATTTGTGGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * *
2172409 GATGCCACTAACTTGTGTGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
2172437 GGTATGCCACTGACTTGTGGGCTTTGGAAG
1 GG--TGCCACTGACTTGTGGGCTTTGAAAG
*
2172467 GGTGCCACTGATTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
2172495 GATGCCACTGACTTGTGGTCTTGTG-AAG
1 GGTGCCACTGACTTGTGGGCTT-TGAAAG
* * **
2172523 AGATGTCACTGACTCATGGGCTTTGAAAG
1 -GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
2172552 GATGCCACTAACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
** *
2172580 AATGCCACTGACCTGTGGGCTTTGAA
1 GGTGCCACTGACTTGTGGGCTTTGAA
2172606 GAGATGAATG
Statistics
Matches: 517, Mismatches: 67, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
28 384 0.74
29 48 0.09
30 59 0.11
31 4 0.01
32 22 0.04
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.28
Consensus pattern (28 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAG
Found at i:2173864 original size:16 final size:17
Alignment explanation
Indices: 2173845--2173909 Score: 64
Period size: 16 Copynumber: 3.8 Consensus size: 17
2173835 ATCTTACCCC
2173845 TTTTTTGTTTGTTTT-T
1 TTTTTTGTTTGTTTTGT
2173861 TTTTTT-TTTGCTTTTGGT
1 TTTTTTGTTTG-TTTT-GT
*
2173879 TTTTTCTATTT-TTTTGT
1 TTTTT-TGTTTGTTTTGT
*
2173896 TTTTCTGTTTGTTT
1 TTTTTTGTTTGTTT
2173910 CTTGGTTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
15 4 0.10
16 14 0.34
17 9 0.22
18 10 0.24
19 1 0.02
20 3 0.07
ACGTcount: A:0.02, C:0.05, G:0.12, T:0.82
Consensus pattern (17 bp):
TTTTTTGTTTGTTTTGT
Found at i:2173875 original size:26 final size:26
Alignment explanation
Indices: 2173846--2173925 Score: 70
Period size: 26 Copynumber: 3.0 Consensus size: 26
2173836 TCTTACCCCT
*
2173846 TTTTTGTTTGTTTTTTTTTTTTTTGC
1 TTTTTGTTTCTTTTTTTTTTTTTTGC
* * *
2173872 TTTTGGTTTTTTCTATTTTTTTGTTTTTC
1 TTTTTGTTTCTT-T-TTTTTTT-TTTTGC
* **
2173901 TGTTTGTTTCTTGGTTTTTTTTTTG
1 TTTTTGTTTCTTTTTTTTTTTTTTG
2173926 GGTGCAAAGG
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
26 14 0.33
27 7 0.17
28 7 0.17
29 14 0.33
ACGTcount: A:0.01, C:0.05, G:0.14, T:0.80
Consensus pattern (26 bp):
TTTTTGTTTCTTTTTTTTTTTTTTGC
Found at i:2173890 original size:24 final size:22
Alignment explanation
Indices: 2173855--2173899 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
2173845 TTTTTTGTTT
2173855 GTTTTTTTTTTTTTTGCTTTTG
1 GTTTTTTTTTTTTTTGCTTTTG
*
2173877 GTTTTTTCTATTTTTTTGTTTTT
1 GTTTTTT-T-TTTTTTTGCTTTT
2173900 CTGTTTGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 7 0.35
23 1 0.05
24 12 0.60
ACGTcount: A:0.02, C:0.04, G:0.11, T:0.82
Consensus pattern (22 bp):
GTTTTTTTTTTTTTTGCTTTTG
Found at i:2187578 original size:20 final size:20
Alignment explanation
Indices: 2187553--2187626 Score: 105
Period size: 20 Copynumber: 3.7 Consensus size: 20
2187543 TAAAAAAAAC
2187553 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
*
2187573 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
*
2187593 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
*
2187613 AAAATGTATCGATA
1 AGAATGTATCGATA
2187627 TATTTGGGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:2189755 original size:78 final size:78
Alignment explanation
Indices: 2189490--2189756 Score: 345
Period size: 79 Copynumber: 3.4 Consensus size: 78
2189480 AATACAAAAA
** * * *
2189490 TTTCTACAATCGGGGATACTCCAACCCCATTATTTCCGAGCGGATACTCTAACCCCGACTTTATT
1 TTTC-ACAATCGGGGATACTCCAACCCCATTATTTTTGAGAGGATACTCCAACCCC-AATTTATT
* *
2189555 TTTAAAACATCAATT
64 TCTAAAACATCGATT
* * * * *
2189570 TTTCACAATCAGAGATACTCCATCCCCATTATTTTTGAGAGGATACTCCAACCCCAGTCGTATTT
1 TTTCACAATCGGGGATACTCCAACCCCATTATTTTTGAGAGGATACTCCAACCCCAAT-TTATTT
2189635 CTAAAACATCGATT
65 CTAAAACATCGATT
* *
2189649 TTTCACAATCGGGGATACTCCAATCCCATTATTTTTGAGAGGATACTCCAACCCCAATTTCTTTC
1 TTTCACAATCGGGGATACTCCAACCCCATTATTTTTGAGAGGATACTCCAACCCCAATTTATTTC
*
2189714 CAAAACATCGATT
66 TAAAACATCGATT
* * *
2189727 TTCCACCATTGGGGATACTCCAACCCCATT
1 TTTCACAATCGGGGATACTCCAACCCCATT
2189757 TTTCTCTCCA
Statistics
Matches: 163, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 45 0.28
79 114 0.70
80 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (78 bp):
TTTCACAATCGGGGATACTCCAACCCCATTATTTTTGAGAGGATACTCCAACCCCAATTTATTTC
TAAAACATCGATT
Found at i:2191390 original size:15 final size:16
Alignment explanation
Indices: 2191360--2191392 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
2191350 TGTTCTTTTC
2191360 CAAAAAAGAAACAAAA
1 CAAAAAAGAAACAAAA
2191376 CAAAAAAGAAA-AAAA
1 CAAAAAAGAAACAAAA
2191391 CA
1 CA
2191393 GAACAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.82, C:0.12, G:0.06, T:0.00
Consensus pattern (16 bp):
CAAAAAAGAAACAAAA
Found at i:2191397 original size:20 final size:21
Alignment explanation
Indices: 2191363--2191403 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
2191353 TCTTTTCCAA
2191363 AAAAGAAACAAAACAAAAAAG
1 AAAAGAAACAAAACAAAAAAG
*
2191384 AAAA-AAACAGAACAAAAAAG
1 AAAAGAAACAAAACAAAAAAG
2191404 GTGTAAAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.80, C:0.10, G:0.10, T:0.00
Consensus pattern (21 bp):
AAAAGAAACAAAACAAAAAAG
Found at i:2191606 original size:281 final size:281
Alignment explanation
Indices: 2191086--2191952 Score: 1646
Period size: 281 Copynumber: 3.1 Consensus size: 281
2191076 GTAAACACAC
* * * *
2191086 AAACAAAAGTCAAAAAA-AAAAAAACAAAACAAAAAAGGTGTAAAAGCAAAATCAAAAAAGGAGC
1 AAACAAAA--CAAAAAAGAAAAAAACAGAACAAAAAAGGTGTAAAGGCAAAATCACAAAGGGAGC
*
2191150 ACCAAAGTCAAAAAACAAGGACATAAATGCCCATATGAACAAAAATGATCATTGATCCTATTACC
64 ACCAAAGTCGAAAAACAAGGACATAAATGCCCATATGAACAAAAATGATCATTGATCCTATTACC
2191215 CTTAAAATGACATATTTTTGGGCCTTTTTATCCCTTCTTTCTGAACCAAGAACCTTGGCCTACGT
129 CTTAAAATGACATATTTTTGGGCCTTTTTATCCCTTCTTTCTGAACCAAGAACCTTGGCCTACGT
2191280 TACGATCCTTCAAAAGTCCATTTCGATCGAACATTGCCGGGTGAACTGGTGAACCTACTCTTCGG
194 TACGATCCTTCAAAAGTCCATTTCGATCGAACATTGCCGGGTGAACTGGTGAACCTACTCTTCGG
2191345 AGAATTGTTCTTTTCCAAAAAAG
259 AGAATTGTTCTTTTCCAAAAAAG
2191368 AAACAAAACAAAAAAGAAAAAAACAGAACAAAAAAGGTGTAAAGGCAAAATCACAAAGGGAGCAC
1 AAACAAAACAAAAAAGAAAAAAACAGAACAAAAAAGGTGTAAAGGCAAAATCACAAAGGGAGCAC
2191433 CAAAGTCGAAAAACAAGGACATAAATGCCCATATGAACAAAAATGATCATTGATCCTATTACCCT
66 CAAAGTCGAAAAACAAGGACATAAATGCCCATATGAACAAAAATGATCATTGATCCTATTACCCT
2191498 TAAAATGACATATTTTTGGGCCTTTTTATCCCTTCTTTCTGAACCAAGAACCTTGGCCTACGTTA
131 TAAAATGACATATTTTTGGGCCTTTTTATCCCTTCTTTCTGAACCAAGAACCTTGGCCTACGTTA
2191563 CGATCCTTCAAAAGTCCATTTCGATCGAACATTGCCGGGTGAACTGGTGAACCTACTCTTCGGAG
196 CGATCCTTCAAAAGTCCATTTCGATCGAACATTGCCGGGTGAACTGGTGAACCTACTCTTCGGAG
2191628 AATTGTTCTTTTCCAAAAAAG
261 AATTGTTCTTTTCCAAAAAAG
2191649 AAACAAAACAAAAAAGAAAAAAACAGAACAAAAAAGGTGTAAAGGCAAAATCACAAAGGGAGCAC
1 AAACAAAACAAAAAAGAAAAAAACAGAACAAAAAAGGTGTAAAGGCAAAATCACAAAGGGAGCAC
2191714 CAAAGTCGAAAAACAAGGACATAAATGCCCATATGAACAAAAATGATCATTGATCCTATTACCCT
66 CAAAGTCGAAAAACAAGGACATAAATGCCCATATGAACAAAAATGATCATTGATCCTATTACCCT
*
2191779 TAAAATGACATATTTTTGGGCCTTTTTATCCCTTCTTTCTGAACCAAGAACCTTGGCCTACGTTT
131 TAAAATGACATATTTTTGGGCCTTTTTATCCCTTCTTTCTGAACCAAGAACCTTGGCCTACGTTA
*
2191844 CGGTCCTTCAAAAGTCCATTTCGATCGAACATTGCCGGGTGAACTGGTGAACCTACTCTTCGGAG
196 CGATCCTTCAAAAGTCCATTTCGATCGAACATTGCCGGGTGAACTGGTGAACCTACTCTTCGGAG
2191909 AATTGTTCTTTTCCAAAAAAG
261 AATTGTTCTTTTCCAAAAAAG
2191930 AAACAAAACAAAAAAGAAAAAAA
1 AAACAAAACAAAAAAGAAAAAAA
2191953 AACCAAAAAA
Statistics
Matches: 577, Mismatches: 7, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
280 7 0.01
281 562 0.97
282 8 0.01
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.23
Consensus pattern (281 bp):
AAACAAAACAAAAAAGAAAAAAACAGAACAAAAAAGGTGTAAAGGCAAAATCACAAAGGGAGCAC
CAAAGTCGAAAAACAAGGACATAAATGCCCATATGAACAAAAATGATCATTGATCCTATTACCCT
TAAAATGACATATTTTTGGGCCTTTTTATCCCTTCTTTCTGAACCAAGAACCTTGGCCTACGTTA
CGATCCTTCAAAAGTCCATTTCGATCGAACATTGCCGGGTGAACTGGTGAACCTACTCTTCGGAG
AATTGTTCTTTTCCAAAAAAG
Found at i:2191671 original size:15 final size:16
Alignment explanation
Indices: 2191641--2191673 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
2191631 TGTTCTTTTC
2191641 CAAAAAAGAAACAAAA
1 CAAAAAAGAAACAAAA
2191657 CAAAAAAGAAA-AAAA
1 CAAAAAAGAAACAAAA
2191672 CA
1 CA
2191674 GAACAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.82, C:0.12, G:0.06, T:0.00
Consensus pattern (16 bp):
CAAAAAAGAAACAAAA
Found at i:2191678 original size:20 final size:21
Alignment explanation
Indices: 2191644--2191684 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
2191634 TCTTTTCCAA
2191644 AAAAGAAACAAAACAAAAAAG
1 AAAAGAAACAAAACAAAAAAG
*
2191665 AAAA-AAACAGAACAAAAAAG
1 AAAAGAAACAAAACAAAAAAG
2191685 GTGTAAAGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.80, C:0.10, G:0.10, T:0.00
Consensus pattern (21 bp):
AAAAGAAACAAAACAAAAAAG
Done.