Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold53
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4419549
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 41486 characters in sequence are not A, C, G, or T
File 16 of 28
Found at i:2296417 original size:5 final size:5
Alignment explanation
Indices: 2296400--2296433 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
2296390 ATATACCACT
* *
2296400 TTTTC TTTCC TTTGC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
2296434 GTTGGTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (5 bp):
TTTTC
Found at i:2296544 original size:6 final size:6
Alignment explanation
Indices: 2296533--2296584 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
2296523 CCCACCTCGC
* * * * * *
2296533 CTCAAT CTCAAT CTGAAC CTCAAA CTCAAA CTCAAT CTCAAC CTCATT
1 CTCAAT CTCAAT CTCAAT CTCAAT CTCAAT CTCAAT CTCAAT CTCAAT
2296581 CTCA
1 CTCA
2296585 TTGGATCGGT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.35, C:0.37, G:0.02, T:0.27
Consensus pattern (6 bp):
CTCAAT
Found at i:2296583 original size:12 final size:12
Alignment explanation
Indices: 2296533--2296584 Score: 59
Period size: 12 Copynumber: 4.3 Consensus size: 12
2296523 CCCACCTCGC
*
2296533 CTCAATCTCAAT
1 CTCAACCTCAAT
* *
2296545 CTGAACCTCAAA
1 CTCAACCTCAAT
*
2296557 CTCAAACTCAAT
1 CTCAACCTCAAT
*
2296569 CTCAACCTCATT
1 CTCAACCTCAAT
2296581 CTCA
1 CTCA
2296585 TTGGATCGGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.35, C:0.37, G:0.02, T:0.27
Consensus pattern (12 bp):
CTCAACCTCAAT
Found at i:2296584 original size:24 final size:24
Alignment explanation
Indices: 2296533--2296578 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
2296523 CCCACCTCGC
* *
2296533 CTCAATCTCAATCTGAACCTCAAA
1 CTCAAACTCAATCTCAACCTCAAA
2296557 CTCAAACTCAATCTCAACCTCA
1 CTCAAACTCAATCTCAACCTCA
2296579 TTCTCATTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.37, C:0.37, G:0.02, T:0.24
Consensus pattern (24 bp):
CTCAAACTCAATCTCAACCTCAAA
Found at i:2299900 original size:7 final size:7
Alignment explanation
Indices: 2299888--2299917 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
2299878 TATTATAATG
2299888 ATAATAA
1 ATAATAA
2299895 ATAATAA
1 ATAATAA
*
2299902 ATAACAA
1 ATAATAA
2299909 ATAATAA
1 ATAATAA
2299916 AT
1 AT
2299918 CTTTTTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (7 bp):
ATAATAA
Found at i:2300383 original size:22 final size:24
Alignment explanation
Indices: 2300342--2300386 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
2300332 AACATTTTAA
*
2300342 TATATTTATATATATTAAAATAAT
1 TATATTTATATATATAAAAATAAT
2300366 TATATTT-TA-ATATAAAAATAA
1 TATATTTATATATATAAAAATAA
2300387 ATATTTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 11 0.55
23 2 0.10
24 7 0.35
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
TATATTTATATATATAAAAATAAT
Found at i:2309637 original size:1 final size:1
Alignment explanation
Indices: 2309633--2309660 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
2309623 GAAGGAAAGG
2309633 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
2309661 CAGTGCAGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:2310482 original size:5 final size:5
Alignment explanation
Indices: 2310472--2310503 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
2310462 GGCATCTATG
*
2310472 TCTAA TCTAA TCTAA TCTAA TCTAA TCCAA TC
1 TCTAA TCTAA TCTAA TCTAA TCTAA TCTAA TC
2310504 AAAATTTATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38
Consensus pattern (5 bp):
TCTAA
Found at i:2316970 original size:7 final size:7
Alignment explanation
Indices: 2316960--2316984 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2316950 CGGCTCTTGG
2316960 CTCCAGC
1 CTCCAGC
2316967 CTCCAGC
1 CTCCAGC
2316974 CTCCAGC
1 CTCCAGC
2316981 CTCC
1 CTCC
2316985 GGCTCCTGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.60, G:0.12, T:0.16
Consensus pattern (7 bp):
CTCCAGC
Found at i:2317719 original size:20 final size:22
Alignment explanation
Indices: 2317686--2317726 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
2317676 ATATATATAT
2317686 AAATATAATGAAATAAAATAAA
1 AAATATAATGAAATAAAATAAA
*
2317708 AAATA-AAT-AAATAATATAA
1 AAATATAATGAAATAAAATAA
2317727 TCAAAACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (22 bp):
AAATATAATGAAATAAAATAAA
Found at i:2317866 original size:18 final size:17
Alignment explanation
Indices: 2317839--2317879 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
2317829 TTACTTGTGG
*
2317839 TTCTTATTTCTCTTCTTT
1 TTCTTTTTTCT-TTCTTT
2317857 TTCTTTTTTCTTTCTTT
1 TTCTTTTTTCTTTCTTT
2317874 TT-TTTT
1 TTCTTTT
2317880 ACAATTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 8 0.36
18 10 0.45
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (17 bp):
TTCTTTTTTCTTTCTTT
Found at i:2322636 original size:13 final size:13
Alignment explanation
Indices: 2322618--2322643 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2322608 CAATTTTTTG
2322618 TGTATCGATACAT
1 TGTATCGATACAT
2322631 TGTATCGATACAT
1 TGTATCGATACAT
2322644 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2322708 original size:21 final size:21
Alignment explanation
Indices: 2322682--2322757 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
2322672 CTGCCAAGAA
*
2322682 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
****
2322703 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
2322723 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
2322744 ATGTATCGATACAT
1 ATGTATCGATACAT
2322758 TGCAACATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:2322728 original size:20 final size:20
Alignment explanation
Indices: 2322703--2322775 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2322693 CATCTTTTTT
2322703 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
2322723 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
2322744 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
2322764 ATGTATCGATAC
1 ATGTATCGATAC
2322776 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:2322739 original size:41 final size:41
Alignment explanation
Indices: 2322682--2322775 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
2322672 CTGCCAAGAA
*
2322682 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2322723 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2322764 ATGTATCGATAC
1 ATGTATCGATAC
2322776 TTTGAATTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:2326502 original size:20 final size:20
Alignment explanation
Indices: 2326477--2326531 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
2326467 TAAACTCAAA
2326477 GTATCGATACATTTATGGA-T
1 GTATCGATACATTT-TGGATT
* *
2326497 GTATCGATACATCTTGTATT
1 GTATCGATACATTTTGGATT
*
2326517 GTATTGATACATTTT
1 GTATCGATACATTTT
2326532 CATATGTATC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 3 0.10
20 27 0.90
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.45
Consensus pattern (20 bp):
GTATCGATACATTTTGGATT
Found at i:2326539 original size:20 final size:21
Alignment explanation
Indices: 2326477--2326547 Score: 60
Period size: 20 Copynumber: 3.5 Consensus size: 21
2326467 TAAACTCAAA
* **
2326477 GTATCGATACAT-TTATGGAT
1 GTATCGATACATCTTGTATAT
2326497 GTATCGATACATCTTGTAT-T
1 GTATCGATACATCTTGTATAT
*
2326517 GTATTGATACAT-TT-TCATAT
1 GTATCGATACATCTTGT-ATAT
*
2326537 GTATCAATACA
1 GTATCGATACA
2326548 AATAAGGGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
18 1 0.02
19 4 0.10
20 34 0.81
21 3 0.07
ACGTcount: A:0.31, C:0.13, G:0.14, T:0.42
Consensus pattern (21 bp):
GTATCGATACATCTTGTATAT
Found at i:2326683 original size:92 final size:93
Alignment explanation
Indices: 2326522--2326694 Score: 242
Period size: 93 Copynumber: 1.9 Consensus size: 93
2326512 GTATTGTATT
* * * * *
2326522 GATACATTTTCATATGTATCAATACAAATAAGGGTTTCAGGATTTGTTTAGCTATTGCTAACAAA
1 GATACATTTTCATATGTATCAATAAAAATAAGGGTTTCAGCATTTGTGTAGCTACTGCCAACAAA
2326587 ATGTATGGATACATTCTCATAATTTATC
66 ATGTATGGATACATTCTCATAATTTATC
* * *
2326615 GATATATTTTCACT-TGTATCGATAAAAATAAGGGTTTTAGCATTT-TGTAGCTACTGCCAACAA
1 GATACATTTTCA-TATGTATCAATAAAAATAAGGGTTTCAGCATTTGTGTAGCTACTGCCAACAA
*
2326678 GATGTATGGATACATTC
65 AATGTATGGATACATTC
2326695 AATCCTTAAC
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
92 31 0.44
93 38 0.54
94 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.38
Consensus pattern (93 bp):
GATACATTTTCATATGTATCAATAAAAATAAGGGTTTCAGCATTTGTGTAGCTACTGCCAACAAA
ATGTATGGATACATTCTCATAATTTATC
Found at i:2328242 original size:21 final size:21
Alignment explanation
Indices: 2328216--2328276 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
2328206 CGATAGAATG
2328216 AATAATGTATCGATACATTAC
1 AATAATGTATCGATACATTAC
**
2328237 AATAATGTATATATACATTTAC
1 AATAATGTATCGATACA-TTAC
*
2328259 --TTATGTATCGATACATTA
1 AATAATGTATCGATACATTA
2328277 ACTTGTTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
19 3 0.09
20 12 0.35
21 15 0.44
22 4 0.12
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.39
Consensus pattern (21 bp):
AATAATGTATCGATACATTAC
Found at i:2328288 original size:21 final size:20
Alignment explanation
Indices: 2328220--2328280 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
2328210 AGAATGAATA
* *
2328220 ATGTATCGATACATTACAATA
1 ATGTATCGATACATTA-ACTT
** *
2328241 ATGTATATATACATTTACTT
1 ATGTATCGATACATTAACTT
2328261 ATGTATCGATACATTAACTT
1 ATGTATCGATACATTAACTT
2328281 GTTGTATCTT
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
20 19 0.59
21 13 0.41
ACGTcount: A:0.38, C:0.13, G:0.08, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTAACTT
Found at i:2328669 original size:20 final size:19
Alignment explanation
Indices: 2328641--2328690 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
2328631 TTTATATAAA
*
2328641 TTTTAATATGTT-TATGTAT
1 TTTTTATATGTTGTAT-TAT
2328660 TTATTTATAT-TTGTATTAT
1 TT-TTTATATGTTGTATTAT
*
2328679 TTTTTGTATGTT
1 TTTTTATATGTT
2328691 AGATGTATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
18 6 0.23
19 11 0.42
20 9 0.35
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.68
Consensus pattern (19 bp):
TTTTTATATGTTGTATTAT
Found at i:2335848 original size:52 final size:52
Alignment explanation
Indices: 2335770--2336165 Score: 393
Period size: 52 Copynumber: 7.6 Consensus size: 52
2335760 GTTAAAACTT
* *
2335770 CTAATCGCCACCATGGCGTCATCATTATCAATGACACTAGGTCACTTTGATC
1 CTAATCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACTTTGATC
** * * *
2335822 CTAATCGCCACCATGGCGCCATCATTATCAGTGACACTAAGTCA-TTCTGATC
1 CTAATCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACTT-TGATC
* * * * * * *
2335874 TTAATCGTCACCATGGTGTGATCATTATCAATGACACTAGGTCAATCTGATC
1 CTAATCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACTTTGATC
* * *
2335926 CTAATCGCCACCATGGTGTTATCGTTATCAATGACAGCAGGTCACTTTGATC
1 CTAATCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACTTTGATC
* * * * *
2335978 CTAATCGCCACAATGGCGCTATCGTTATCAATGACACCAAGTCA-TTCTAATC
1 CTAATCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACTT-TGATC
* * * * * *
2336030 CTAACCGCCACTATGGCGCTATCATTATCAGTGACACCAGGTCACTCTAATC
1 CTAATCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACTTTGATC
* * * * * **
2336082 CTAACCGCCATCGTGGCGTTATCATTATCAGTGACACCAAGTCACTCCCG-TC
1 CTAATCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACT-TTGATC
* ** *
2336134 CTAATCGCCATCATGGTATTATCATTACCAAT
1 CTAATCGCCACCATGGCGTTATCATTATCAAT
2336166 AAAAACAAGT
Statistics
Matches: 295, Mismatches: 44, Indels: 10
0.85 0.13 0.03
Matches are distributed among these distances:
51 4 0.01
52 288 0.98
53 3 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (52 bp):
CTAATCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACTTTGATC
Found at i:2336143 original size:156 final size:156
Alignment explanation
Indices: 2335770--2336127 Score: 466
Period size: 156 Copynumber: 2.3 Consensus size: 156
2335760 GTTAAAACTT
* * * *
2335770 CTAATCGCCACCATGGCGTCATCATTATCAATGACACTAGGTCACTTTGATCCTAATCGCCACCA
1 CTAACCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACTTTGATCCTAATCGCCACAA
* * * * * * *
2335835 TGGCGCCATCATTATCAGTGACACTAAGTCATTCTGATCTTAATCGTCACCATGGTGTGATCATT
66 TGGCGCCATCATTATCAATGACACCAAGTCATTCTAATCCTAACCGCCACCATGGCGTGATCATT
* *
2335900 ATCAATGACACTAGGTCAATCTGATC
131 ATCAATGACACCAGGTCAATCTAATC
* * * *
2335926 CTAATCGCCACCATGGTGTTATCGTTATCAATGACAGCAGGTCACTTTGATCCTAATCGCCACAA
1 CTAACCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACTTTGATCCTAATCGCCACAA
* * *
2335991 TGGCGCTATCGTTATCAATGACACCAAGTCATTCTAATCCTAACCGCCACTATGGCGCT-ATCAT
66 TGGCGCCATCATTATCAATGACACCAAGTCATTCTAATCCTAACCGCCACCATGGCG-TGATCAT
* *
2336055 TATCAGTGACACCAGGTCACTCTAATC
130 TATCAATGACACCAGGTCAATCTAATC
* * * *
2336082 CTAACCGCCATCGTGGCGTTATCATTATCAGTGACACCAAGTCACT
1 CTAACCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACT
2336128 CCCGTCCTAA
Statistics
Matches: 173, Mismatches: 28, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
156 172 0.99
157 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (156 bp):
CTAACCGCCACCATGGCGTTATCATTATCAATGACACCAGGTCACTTTGATCCTAATCGCCACAA
TGGCGCCATCATTATCAATGACACCAAGTCATTCTAATCCTAACCGCCACCATGGCGTGATCATT
ATCAATGACACCAGGTCAATCTAATC
Found at i:2343329 original size:2 final size:2
Alignment explanation
Indices: 2343322--2343347 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2343312 TTCAATATGC
2343322 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
2343348 GCATTGCCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2345385 original size:2 final size:2
Alignment explanation
Indices: 2345378--2345402 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2345368 AAAATTTTGA
2345378 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2345403 AATTTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2346781 original size:165 final size:166
Alignment explanation
Indices: 2346403--2346832 Score: 646
Period size: 165 Copynumber: 2.6 Consensus size: 166
2346393 GAGTTTTCTT
* * *
2346403 AATTTTTAAAATTCATTAAATATTATTATTTATTTCATATTAAATCAGTTTTCAAAAATTAATTC
1 AATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTC
* * *
2346468 ATGTTCATGAGTTTTTGAATTTTTTCTTTGAAATTTTTTTATTTTCAAAATACGATGTTTTCTAC
66 ATCTTCATGAGTTTTTGAATTTTTTCTTTGAAATTCTTTTATTTCCAAAATACGATGTTTTCTAC
* * *
2346533 TCTGTAATTTTTTCGAGGGGATTTTTCTTGGTTTTT
131 TCCGTAATTTTTTCGAGGGGATTTTTCTAGGTTTTC
* *
2346569 AATTTTTAAAATTCATAAAATATTATTATTTATTTCATATAAATTCAGTTTTCAAAAATTCATTT
1 AATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTC
* * * * *
2346634 ATTTTCATGAGTTTTTGAATTTTTTCCTTGAAATTCTTTT-TTTCCAAAGTACGGTGTTTTTTAC
66 ATCTTCATGAGTTTTTGAATTTTTTCTTTGAAATTCTTTTATTTCCAAAATACGATGTTTTCTAC
*
2346698 TCCGTAATTTTTTTGAGGGGATTTTTCTAGGTTTTC
131 TCCGTAATTTTTTCGAGGGGATTTTTCTAGGTTTTC
* * * * * *
2346734 AATTTTTAAAATTCATCAAACATCATTATTTATTTCTTCTTAATTCAGTTTTTAAAAATTCATTC
1 AATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTC
2346799 ATCTTCATGAGTTTTTGAATTTTTTCTTTGAAAT
66 ATCTTCATGAGTTTTTGAATTTTTTCTTTGAAAT
2346833 CCCCATTTTC
Statistics
Matches: 238, Mismatches: 26, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
165 141 0.59
166 97 0.41
ACGTcount: A:0.29, C:0.10, G:0.09, T:0.53
Consensus pattern (166 bp):
AATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTC
ATCTTCATGAGTTTTTGAATTTTTTCTTTGAAATTCTTTTATTTCCAAAATACGATGTTTTCTAC
TCCGTAATTTTTTCGAGGGGATTTTTCTAGGTTTTC
Found at i:2349098 original size:156 final size:156
Alignment explanation
Indices: 2348629--2349962 Score: 1774
Period size: 156 Copynumber: 8.6 Consensus size: 156
2348619 AATATTTTGT
* * * *
2348629 ATCCCTTTACTAGTCTTTTTAGGTCTTTTAGGGTTG-CTAGGATACTTTTACGTTGAAGGTATAC
1 ATCCCTTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGAGG-TACTTTTACGTCGAAGGTATAC
* * * * *
2348693 CCATAGGGGTATTTTCGTAATTTTTTAGAATCGAGTCTTAGGTTGTCACCGGGTTCGCTTTTATG
65 CCATAGGGGCATTTTCGTAATTTCTTAGAACCGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATG
2348758 CCGAAGGTGGGCATTTAGGATAGGTTC
130 CCGAAGGTGGGCATTTAGGATAGGTTC
* * * *
2348785 ATCCATTTTCTAGTCTTTTTAGGTCTTTTAAGGTTGCCAAGGTACTTTTACGTCGAAGGTATACC
1 ATCCCTTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGAGGTACTTTTACGTCGAAGGTATACC
* * *** * *
2348850 TATAGAGGCA-TTTCGTAATTT-TTGAGAATTAAGCCCTAGGTTGTCACTGGGTCCGCTTTTATG
66 CATAGGGGCATTTTCGTAATTTCTT-AGAACCGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATG
* *
2348913 CCGAAGGTGAGCATTTAGGAAAGGTTC
130 CCGAAGGTGGGCATTTAGGATAGGTTC
* * * *
2348940 ATCCTTTTTCTAGTCTTTTCAGGTCTTTTAGGGTTGTCGAGGTACTTTTACGTCGAAGGTATACC
1 ATCCCTTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGAGGTACTTTTACGTCGAAGGTATACC
* * * * *
2349005 CATAGGGGTATTTTCGTAATTTCTTGGAACCAAGTCTTAGGTTGTCACCGGGTCTGCTTTTATGC
66 CATAGGGGCATTTTCGTAATTTCTTAGAACCGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATGC
2349070 CGAAGGTGGGCATTTAGGATAGGTTC
131 CGAAGGTGGGCATTTAGGATAGGTTC
* * * *
2349096 ATCCATTTTCTAGTCTTTTTAGGTCCTTTAGGATTGCCG-GGATATTTTTACGTCGAAAGTATAC
1 ATCCCTTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGAGG-TACTTTTACGTCGAAGGTATAC
* *
2349160 CCATAGGGGCATTTTCATAATTTCTTAGAACCGAGTCCTAGATTGTCACCGGGTCCGCTTTTATG
65 CCATAGGGGCATTTTCGTAATTTCTTAGAACCGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATG
2349225 CCGAAGGTGGGCATTTAGGATAGGTTC
130 CCGAAGGTGGGCATTTAGGATAGGTTC
* *
2349252 ATCCCTTTTCTAGTCTTTTTAGGTCCTTTAAGGTTGCCAAGGTACTTTTACGTCGAAGGTATACC
1 ATCCCTTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGAGGTACTTTTACGTCGAAGGTATACC
* * * ** *
2349317 CATATGGGCATTTTCATAATTT-TCAAGAACCGAACCCTAGGTTGTCACCGGGTCTGCTTTTATG
66 CATAGGGGCATTTTCGTAATTTCT-TAGAACCGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATG
* *
2349381 CCGAAGGTGGGCATTTAGGAAAGATTC
130 CCGAAGGTGGGCATTTAGGATAGGTTC
* * *
2349408 ATCCTTTTTCTAGTCTTTTTAGGTCTTTTAGGGTTGTCGAGGTACTTTTACGTCGAAGGTATACC
1 ATCCCTTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGAGGTACTTTTACGTCGAAGGTATACC
* * * * *
2349473 CATATGGGCATTTTCGTAATTTCTTGGAATCGAGTCTTAGGTTGTCACCGGGTCCGCTTTTATGT
66 CATAGGGGCATTTTCGTAATTTCTTAGAACCGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATGC
2349538 CGAAGGTGGGCATTTAGGATAGGTTC
131 CGAAGGTGGGCATTTAGGATAGGTTC
**
2349564 ATCTATTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCG-GGATACTTTTACGTCGAAGGTATAC
1 ATCCCTTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGAGG-TACTTTTACGTCGAAGGTATAC
* * *
2349628 CCATAGGGGCATTTTCGTAATTTCTTAGAACTGAGTCCTAGGTTGTCACTGGGTCCGGTTTTATG
65 CCATAGGGGCATTTTCGTAATTTCTTAGAACCGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATG
*
2349693 CCGAAGGTAGGCATTTAGGATAGGTTC
130 CCGAAGGTGGGCATTTAGGATAGGTTC
* * * * *
2349720 ATCCCTTCTCTAGTCTTTTTAGGTCCTTTAGGGTTACC-AGGGTACTTTTACATTGAAGCTATAC
1 ATCCCTTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGA-GGTACTTTTACGTCGAAGGTATAC
* * *
2349784 CCATAGCGGTATTTTCGTAATTTC-TCGAAACCGAGTCCTAGGTTGTCACCGGGTCCGCTTTTAT
65 CCATAGGGGCATTTTCGTAATTTCTTAG-AACCGAGTCCTAGGTTGTCACCGGGTCCGCTTTTAT
*
2349848 GCCGAAGGTGGGTATTTAGGATAGGTTC
129 GCCGAAGGTGGGCATTTAGGATAGGTTC
* * * * * *
2349876 A-CCCCTTTATAGTCATTTTTTA-GTCCTTTAGGAG-TACC-ACGATACTTTTATGTCAAAGGTA
1 ATCCCTTTTCTAGTC--TTTTTAGGTCCTTTAGG-GTTGCCGA-GGTACTTTTACGTCGAAGGTA
* * *
2349937 TACCCTTAGGGGTATTTTGGTAATTT
62 TACCCATAGGGGCATTTTCGTAATTT
2349963 TTTTGAAACT
Statistics
Matches: 1045, Mismatches: 118, Indels: 30
0.88 0.10 0.03
Matches are distributed among these distances:
154 2 0.00
155 153 0.15
156 872 0.83
157 18 0.02
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.38
Consensus pattern (156 bp):
ATCCCTTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGAGGTACTTTTACGTCGAAGGTATACC
CATAGGGGCATTTTCGTAATTTCTTAGAACCGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATGC
CGAAGGTGGGCATTTAGGATAGGTTC
Found at i:2349924 original size:468 final size:467
Alignment explanation
Indices: 2348629--2349962 Score: 1971
Period size: 468 Copynumber: 2.9 Consensus size: 467
2348619 AATATTTTGT
* * * ** *
2348629 ATCCCTTTACTAGTCTTTTTAGGTCTTTTAGGGTTGCTAGGATACTTTTACGTTGAAGGTATACC
1 ATCCATTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGGGATACTTTTACGTCGAAGGTATACC
* * * *
2348694 CATAGGGGTATTTTCGTAATTTTTTAGAA-TCGAGTCTTAGGTTGTCACCGGGTTCGCTTTTATG
66 CATAGGGGCATTTTCGTAATTTCTTAGAACT-GAGTCCTAGGTTGTCACCGGGTCCGCTTTTATG
* *
2348758 CCGAAGGTGGGCATTTAGGATAGGTTCATCCATTTTCTAGTCTTTTTAGGTCTTTTAAGGTTGCC
130 CCGAAGGTGGGCATTTAGGATAGGTTCATCCCTTTTCTAGTCTTTTTAGGTCCTTTAAGGTTGCC
* * ***
2348823 AAGGTACTTTTACGTCGAAGGTATACCTATAGAGGCA-TTTCGTAATTTTTGAGAATTAAGCCCT
195 AAGGTACTTTTACGTCGAAGGTATACCCATAG-GGCATTTTCGTAATTTTCGAGAACCGAGCCCT
* *
2348887 AGGTTGTCACTGGGTCCGCTTTTATGCCGAAGGTGAGCATTTAGGAAAGGTTCATCCTTTTTCTA
259 AGGTTGTCACCGGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGAAAGGTTCATCCTTTTTCTA
*
2348952 GTCTTTTCAGGTCTTTTAGGGTTGTCGAGGTACTTTTACGTCGAAGGTATACCCATAGGGGTATT
324 GTCTTTTTAGGTCTTTTAGGGTTGTCGAGGTACTTTTACGTCGAAGGTATACCCATAGGGGTATT
*
2349017 TTCGTAATTTCTTGGAACCAAGTCTTAGGTTGTCACCGGGTCTGCTTTTATGCCGAAGGTGGGCA
389 TTCGTAATTTCTTGGAACCAAGTCTTAGGTTGTCACCGGGTCCGCTTTTATGCCGAAGGTGGGCA
2349082 TTTAGGATAGGTTC
454 TTTAGGATAGGTTC
* * *
2349096 ATCCATTTTCTAGTCTTTTTAGGTCCTTTAGGATTGCCGGGATATTTTTACGTCGAAAGTATACC
1 ATCCATTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGGGATACTTTTACGTCGAAGGTATACC
* * *
2349161 CATAGGGGCATTTTCATAATTTCTTAGAACCGAGTCCTAGATTGTCACCGGGTCCGCTTTTATGC
66 CATAGGGGCATTTTCGTAATTTCTTAGAACTGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATGC
2349226 CGAAGGTGGGCATTTAGGATAGGTTCATCCCTTTTCTAGTCTTTTTAGGTCCTTTAAGGTTGCCA
131 CGAAGGTGGGCATTTAGGATAGGTTCATCCCTTTTCTAGTCTTTTTAGGTCCTTTAAGGTTGCCA
* * *
2349291 AGGTACTTTTACGTCGAAGGTATACCCATATGGGCATTTTCATAATTTTCAAGAACCGAACCCTA
196 AGGTACTTTTACGTCGAAGGTATACCCATA-GGGCATTTTCGTAATTTTCGAGAACCGAGCCCTA
* *
2349356 GGTTGTCACCGGGTCTGCTTTTATGCCGAAGGTGGGCATTTAGGAAAGATTCATCCTTTTTCTAG
260 GGTTGTCACCGGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGAAAGGTTCATCCTTTTTCTAG
* *
2349421 TCTTTTTAGGTCTTTTAGGGTTGTCGAGGTACTTTTACGTCGAAGGTATACCCATATGGGCATTT
325 TCTTTTTAGGTCTTTTAGGGTTGTCGAGGTACTTTTACGTCGAAGGTATACCCATAGGGGTATTT
* * *
2349486 TCGTAATTTCTTGGAATCGAGTCTTAGGTTGTCACCGGGTCCGCTTTTATGTCGAAGGTGGGCAT
390 TCGTAATTTCTTGGAACCAAGTCTTAGGTTGTCACCGGGTCCGCTTTTATGCCGAAGGTGGGCAT
2349551 TTAGGATAGGTTC
455 TTAGGATAGGTTC
*
2349564 ATCTATTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGGGATACTTTTACGTCGAAGGTATACC
1 ATCCATTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGGGATACTTTTACGTCGAAGGTATACC
* *
2349629 CATAGGGGCATTTTCGTAATTTCTTAGAACTGAGTCCTAGGTTGTCACTGGGTCCGGTTTTATGC
66 CATAGGGGCATTTTCGTAATTTCTTAGAACTGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATGC
* * * *
2349694 CGAAGGTAGGCATTTAGGATAGGTTCATCCCTTCTCTAGTCTTTTTAGGTCCTTTAGGGTTACCA
131 CGAAGGTGGGCATTTAGGATAGGTTCATCCCTTTTCTAGTCTTTTTAGGTCCTTTAAGGTTGCCA
* * * * * *
2349759 GGGTACTTTTACATTGAAGCTATACCCATAGCGGTATTTTCGTAATTTCTCGA-AACCGAGTCCT
196 AGGTACTTTTACGTCGAAGGTATACCCATAG-GGCATTTTCGTAATTT-TCGAGAACCGAGCCCT
* * ** *
2349823 AGGTTGTCACCGGGTCCGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCA-CCCCTTTATA
259 AGGTTGTCACCGGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGAAAGGTTCATCCTTTTTCTA
* * * * * * *
2349887 GTCATTTTTTA-GTCCTTTAGGAG-T-ACCACGATACTTTTATGTCAAAGGTATACCCTTAGGGG
324 GTC--TTTTTAGGTCTTTTAGG-GTTGTCGA-GGTACTTTTACGTCGAAGGTATACCCATAGGGG
*
2349949 TATTTTGGTAATTT
385 TATTTTCGTAATTT
2349963 TTTTGAAACT
Statistics
Matches: 782, Mismatches: 76, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
467 222 0.28
468 550 0.70
469 10 0.01
ACGTcount: A:0.21, C:0.18, G:0.24, T:0.38
Consensus pattern (467 bp):
ATCCATTTTCTAGTCTTTTTAGGTCCTTTAGGGTTGCCGGGATACTTTTACGTCGAAGGTATACC
CATAGGGGCATTTTCGTAATTTCTTAGAACTGAGTCCTAGGTTGTCACCGGGTCCGCTTTTATGC
CGAAGGTGGGCATTTAGGATAGGTTCATCCCTTTTCTAGTCTTTTTAGGTCCTTTAAGGTTGCCA
AGGTACTTTTACGTCGAAGGTATACCCATAGGGCATTTTCGTAATTTTCGAGAACCGAGCCCTAG
GTTGTCACCGGGTCCGCTTTTATGCCGAAGGTGGGCATTTAGGAAAGGTTCATCCTTTTTCTAGT
CTTTTTAGGTCTTTTAGGGTTGTCGAGGTACTTTTACGTCGAAGGTATACCCATAGGGGTATTTT
CGTAATTTCTTGGAACCAAGTCTTAGGTTGTCACCGGGTCCGCTTTTATGCCGAAGGTGGGCATT
TAGGATAGGTTC
Found at i:2352073 original size:21 final size:19
Alignment explanation
Indices: 2352036--2352074 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
2352026 TCATGGGTTT
2352036 AAAATTTTTTTAATTTATC
1 AAAATTTTTTTAATTTATC
*
2352055 AAAATTATTATTTATTTTAT
1 AAAATT-TT-TTTAATTTAT
2352075 ATTAAATCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 2 0.12
21 9 0.53
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (19 bp):
AAAATTTTTTTAATTTATC
Found at i:2352385 original size:162 final size:162
Alignment explanation
Indices: 2352058--2352464 Score: 532
Period size: 162 Copynumber: 2.5 Consensus size: 162
2352048 ATTTATCAAA
** *
2352058 ATTATTATTTATTTTATATTAAATCAGTTTTCAAAAATTTC-TTCATTTCCATTAGTTTTTGAAT
1 ATTATTATTTATTCCATATTAAATCAGTTTTC-AAAATTTCATTCATTTTCATTAGTTTTTGAAT
* * *
2352122 CTTTTCTTTGAAATTCCCTTGTTTTCGAAATACGAAATTTTCTATTCATTAAATTTTTTTTGAGG
65 -TTTTCTTTGAAATT---TTGTTTTCAAAATACGAAATTTTCTATTCAGTAAAGTTTTTTTGAGG
*
2352187 ATTTTTCTTAGTTTTTAATTTTTTAAATTCATAAAAT
126 ATTTTTCTTAGTTTTTAATTTTTAAAATTCATAAAAT
* * * *
2352224 ATTATTATTTATTCCATATTAAGTCAATTTTCCAAATTTCATTCATTTTCATTAGTTTTTAAATT
1 ATTATTATTTATTCCATATTAAATCAGTTTTCAAAATTTCATTCATTTTCATTAGTTTTTGAATT
* * * * *
2352289 TTTCCTTGAAATTTTTTTTTCAAAATATGGAGTTTTCTACTTC-GT-AAGTTTTTTTGAGGGATT
66 TTTCTTTGAAATTTTGTTTTCAAAATACGAAATTTTCTA-TTCAGTAAAGTTTTTTTGA-GGATT
* *
2352352 TTTCTTGGTTTTTTATTTTTAAAATTCATAAAAT
129 TTTCTTAGTTTTTAATTTTTAAAATTCATAAAAT
* ** *
2352386 ATTATTATTTATTCCATATTAAATCAGGTTTCAAAAAGTAATTCATTTTCATTAGTTTTTGAATT
1 ATTATTATTTATTCCATATTAAATCAGTTTTCAAAATTTCATTCATTTTCATTAGTTTTTGAATT
2352451 TTTCTTTGAAATTT
66 TTTCTTTGAAATTT
2352465 CCCTTTTCCT
Statistics
Matches: 211, Mismatches: 27, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
161 11 0.05
162 128 0.61
163 3 0.01
165 20 0.09
166 49 0.23
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.54
Consensus pattern (162 bp):
ATTATTATTTATTCCATATTAAATCAGTTTTCAAAATTTCATTCATTTTCATTAGTTTTTGAATT
TTTCTTTGAAATTTTGTTTTCAAAATACGAAATTTTCTATTCAGTAAAGTTTTTTTGAGGATTTT
TCTTAGTTTTTAATTTTTAAAATTCATAAAAT
Found at i:2354485 original size:55 final size:55
Alignment explanation
Indices: 2354242--2354657 Score: 453
Period size: 55 Copynumber: 7.3 Consensus size: 55
2354232 ACGAATTCGA
* *
2354242 TCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACC-TTCAG
1 TCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCACCTTTCAG
* *
2354301 TCCTCAAAGAGCAGGATGCTTTTGCCGTTCAAAGCCCACACAAGTTGGTGGCACC-TTCAG
1 TCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
* *
2354361 TCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
1 TCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
* * * * *
2354422 TCCCCAAAGAGCAGGACCCCTTTCAAAGCCCACATAAGTTGGTGGCA-TTTTCCAA
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAG
*
2354477 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAG
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAG
* *
2354532 TCCTCAAAGAGCATGACACCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAG
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
* * * * * *
2354587 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGTACTTTTTAA
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
2354642 TCCTCAAAGAGCAGGA
1 TCCTCAAAGAGCAGGA
2354658 TACACTTTAT
Statistics
Matches: 322, Mismatches: 26, Indels: 22
0.87 0.07 0.06
Matches are distributed among these distances:
54 3 0.01
55 191 0.59
56 3 0.01
59 17 0.05
60 81 0.25
61 21 0.07
64 3 0.01
65 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (55 bp):
TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
Found at i:2354581 original size:29 final size:29
Alignment explanation
Indices: 2354493--2354583 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 29
2354483 AAGAGCAGGA
*
2354493 CACCTTTCAAAGCCCACACAAGTTGGTGG
1 CACCTTTTAAAGCCCACACAAGTTGGTGG
** * * * * *
2354522 CA--TTTTCCAGTCCTCA-AAG-AGCATGA
1 CACCTTTTAAAGCCCACACAAGTTG-GTGG
2354548 CACCTTTTAAAGCCCACACAAGTTGGTGG
1 CACCTTTTAAAGCCCACACAAGTTGGTGG
2354577 CACCTTT
1 CACCTTT
2354584 CAGTCCTCAA
Statistics
Matches: 42, Mismatches: 15, Indels: 10
0.63 0.22 0.15
Matches are distributed among these distances:
25 1 0.02
26 7 0.17
27 9 0.21
28 10 0.24
29 14 0.33
30 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (29 bp):
CACCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:2354611 original size:165 final size:168
Alignment explanation
Indices: 2354242--2354657 Score: 509
Period size: 165 Copynumber: 2.4 Consensus size: 168
2354232 ACGAATTCGA
* ** *
2354242 TCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCA
1 TCCTCAAAGAGCAGGACGCC-TTTC----AAAGCCCACACAAGTTGGTGGCATTTTCAATCCTCA
*
2354307 AAGAGCAGGATGCTTTTGCCGTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAG
61 AAGAGCAGGA-GC---TACCGTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAG
**
2354372 CAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
122 CAGGA-GC--TACCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
* * *
2354422 TCCCCAAAGAGCAGGACCCCTTTCAAAGCCCACATAAGTTGGTGGCATTTTCCAATCCTCAAAGA
1 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTT-CAATCCTCAAAGA
* ** *
2354487 GCAGGA-C-ACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCATGA-C
65 GCAGGAGCTACCGTTCAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGAGC
2354549 -ACCTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAG
129 TACCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
* * *
2354587 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGTACTTTTTAATCCTCAAAGA
1 TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCAATCCTCAAAGA
2354652 GCAGGA
65 GCAGGA
2354658 TACACTTTAT
Statistics
Matches: 213, Mismatches: 20, Indels: 21
0.84 0.08 0.08
Matches are distributed among these distances:
165 91 0.43
166 9 0.04
169 1 0.00
170 30 0.14
171 18 0.08
174 1 0.00
175 23 0.11
176 18 0.08
179 4 0.02
180 18 0.08
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (168 bp):
TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCAATCCTCAAAGAG
CAGGAGCTACCGTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGAGCTA
CCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
Found at i:2357754 original size:27 final size:27
Alignment explanation
Indices: 2357720--2357803 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
2357710 TTTCTTCACA
2357720 ATCA-GGGATACTCCAACCCCGTTAATT
1 ATCAGGGGATACTCCAACCCCGTT-ATT
2357747 ATC-GGGGATACTCCAACCCCGTTATT
1 ATCAGGGGATACTCCAACCCCGTTATT
* *
2357773 TTCGAGGGGATACTCTAACCCCGGTT-TT
1 ATC-AGGGGATACTCCAACCCC-GTTATT
2357801 ATC
1 ATC
2357804 GCTAAAACAC
Statistics
Matches: 50, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
26 5 0.10
27 22 0.44
28 20 0.40
29 3 0.06
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (27 bp):
ATCAGGGGATACTCCAACCCCGTTATT
Found at i:2357850 original size:52 final size:52
Alignment explanation
Indices: 2357778--2357951 Score: 167
Period size: 52 Copynumber: 3.3 Consensus size: 52
2357768 TTATTTTCGA
* * * *
2357778 GGGGATACTCTAACCCCGGTTTTATCGCT-AAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCTCGGTTTTAT-TCTAAAAACACCAATTTTTCCACAATC
* * * * **
2357830 GGGGATACTCCAATCTCGGTTTTATTTTCAAAACGCCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACCTCGGTTTTATTCTAAAAACACCAATTTTTCC-ACAATC
* *
2357882 GGGGATACTCCAA-CTCCGATTTTATTTCTAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACCT-CGGTTTTA-TTCTAAAAACACCAATTTTTCCACAATC
*
2357934 GAGGATACTCCAACCTCG
1 GGGGATACTCCAACCTCG
2357952 TTATTTCATC
Statistics
Matches: 99, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
51 9 0.09
52 72 0.73
53 14 0.14
54 4 0.04
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (52 bp):
GGGGATACTCCAACCTCGGTTTTATTCTAAAAACACCAATTTTTCCACAATC
Found at i:2357931 original size:104 final size:103
Alignment explanation
Indices: 2357611--2357947 Score: 281
Period size: 104 Copynumber: 3.2 Consensus size: 103
2357601 CTCAATTCTC
* * * * *
2357611 CACAATCAGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTT-CTATAATCGTGGAT
1 CACAATCAGGGATACTCCAACT-CGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
*
2357675 ACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTT
65 ACTCTAACTCCGATTTTATTT-CTAAAAACACCAATTT-TT
* * * * * * * ** **
2357716 CACAATCAGGGATACTCCAACCCCG-TTAATTATCGGGGATACTCCAA--CCCCGTTATTTTCGA
1 CACAATCAGGGATACTCCAACTCGGTTTTATTTTC---AAAACACCAATTTTCC-TT-TAATC--
* * ** *
2357778 GGGGATACTCTAACCCCGGTTTTATCGCT-AAAACACTAATTTTT
59 GGGGATACTCTAACTCCGATTTTATTTCTAAAAACACCAATTTTT
* *
2357822 CCACAATCGGGGATACTCCAATCTCGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGA
1 -CACAATCAGGGATACTCCAA-CTCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGA
* *
2357887 TACTCCAACTCCGATTTTATTTCTAAAAATACCAATTTTT
64 TACTCTAACTCCGATTTTATTTCTAAAAACACCAATTTTT
2357927 CACAATC-GAGGATACTCCAAC
1 CACAATCAG-GGATACTCCAAC
2357948 CTCGTTATTT
Statistics
Matches: 176, Mismatches: 41, Indels: 32
0.71 0.16 0.13
Matches are distributed among these distances:
103 9 0.05
104 43 0.24
105 34 0.19
106 19 0.11
107 36 0.20
108 6 0.03
109 29 0.16
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (103 bp):
CACAATCAGGGATACTCCAACTCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATA
CTCTAACTCCGATTTTATTTCTAAAAACACCAATTTTT
Found at i:2357976 original size:212 final size:212
Alignment explanation
Indices: 2357609--2357999 Score: 583
Period size: 212 Copynumber: 1.8 Consensus size: 212
2357599 TTCTCAATTC
* * *
2357609 TCCACAATCAGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGTGGA
1 TCCACAATCAGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
*
2357674 TACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCAGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCAGGGATACTCCAACCC
* * *
2357739 CGTTAATTATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCTAACCCCGGTTTTATC
131 CGTTAATTATCGGGGATACTCCAACCCCGTTACTTCCGAAGGGATACTCTAACCCCGGTTTTATC
2357804 GCTAAAACACTAATTTT
196 GCTAAAACACTAATTTT
* * * *
2357821 TCCACAATCGGGGATACTCCAA-TCTCGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCAGGGATACTCCAACTC-CGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
* *
2357885 GATACTCCAACTCCGATTTTATTT-CTAAAAATACCAATTT-TTCACAATC-GAGGATACTCCAA
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCAG-GGATACTCCAA
* *
2357947 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAAGGGATACTC
128 CCCCGTTAATT-ATCGGGGATACTCCAACCCCGTTACTTCCGAAGGGATACTC
2358000 CAATCCCGAT
Statistics
Matches: 160, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
210 1 0.01
211 31 0.19
212 96 0.60
213 32 0.20
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (212 bp):
TCCACAATCAGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCAGGGATACTCCAACCC
CGTTAATTATCGGGGATACTCCAACCCCGTTACTTCCGAAGGGATACTCTAACCCCGGTTTTATC
GCTAAAACACTAATTTT
Found at i:2357994 original size:28 final size:27
Alignment explanation
Indices: 2357936--2358007 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
2357926 TCACAATCGA
* *
2357936 GGATACTCCAACCTCGTTATTTCATCGG
1 GGATACTCCAACCCCGTTACTTCA-CGG
2357964 GGATACTCCAACCCCGTTACTTC-CGAAG
1 GGATACTCCAACCCCGTTACTTCACG--G
*
2357992 GGATACTCCAATCCCG
1 GGATACTCCAACCCCG
2358008 ATTTTTTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 2 0.05
28 37 0.95
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (27 bp):
GGATACTCCAACCCCGTTACTTCACGG
Found at i:2370500 original size:8 final size:8
Alignment explanation
Indices: 2370487--2370555 Score: 59
Period size: 8 Copynumber: 8.5 Consensus size: 8
2370477 CCTTCTCTTC
2370487 AAAAAAGA
1 AAAAAAGA
*
2370495 AAAAAAAA
1 AAAAAAGA
*
2370503 ACAAAAAAA
1 A-AAAAAGA
*
2370512 AAAAAACA
1 AAAAAAGA
*
2370520 AAAAAACA
1 AAAAAAGA
2370528 AAACAAAGA
1 AAA-AAAGA
*
2370537 AAAAGAG-
1 AAAAAAGA
*
2370544 AGAAAAGA
1 AAAAAAGA
2370552 AAAA
1 AAAA
2370556 GAACCTACTT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
7 5 0.10
8 31 0.61
9 15 0.29
ACGTcount: A:0.86, C:0.06, G:0.09, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:2370510 original size:13 final size:13
Alignment explanation
Indices: 2370494--2370540 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
2370484 TTCAAAAAAG
2370494 AAAAAAAAAACAAA
1 AAAAAAAAAAC-AA
2370508 AAAAAAAAAACAA
1 AAAAAAAAAACAA
*
2370521 AAAAACAAAACAA
1 AAAAAAAAAACAA
2370534 AGAAAAA
1 A-AAAAA
2370541 GAGAGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 15 0.50
14 15 0.50
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAACAA
Found at i:2370513 original size:14 final size:14
Alignment explanation
Indices: 2370494--2370540 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
2370484 TTCAAAAAAG
2370494 AAAAAAAAAACAAA
1 AAAAAAAAAACAAA
2370508 AAAAAAAAAAC-AA
1 AAAAAAAAAACAAA
*
2370521 AAAAACAAAACAAA
1 AAAAAAAAAACAAA
2370535 GAAAAA
1 -AAAAA
2370541 GAGAGAAAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 12 0.40
14 13 0.43
15 5 0.17
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAACAAA
Found at i:2370514 original size:22 final size:22
Alignment explanation
Indices: 2370494--2370540 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
2370484 TTCAAAAAAG
2370494 AAAAAAAAAACAAAAAAA-AAA
1 AAAAAAAAAACAAAAAAACAAA
*
2370515 AAACAAAAAAACAAAACAAAGAAA
1 AAA-AAAAAAACAAAA-AAACAAA
2370539 AA
1 AA
2370541 GAGAGAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 3 0.13
22 12 0.52
23 3 0.13
24 5 0.22
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAACAAAAAAACAAA
Found at i:2370555 original size:1 final size:1
Alignment explanation
Indices: 2370487--2370540 Score: 54
Period size: 1 Copynumber: 54.0 Consensus size: 1
2370477 CCTTCTCTTC
* * * * * *
2370487 AAAAAAGAAAAAAAAAACAAAAAAAAAAAAACAAAAAAACAAAACAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2370541 GAGAGAAAAG
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.89, C:0.07, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Found at i:2371739 original size:59 final size:59
Alignment explanation
Indices: 2371524--2372299 Score: 901
Period size: 59 Copynumber: 13.3 Consensus size: 59
2371514 TCCGCTTTTT
* * * * * **
2371524 AGTCCTCGAAGAGCAGGATGCCTTTTCCTTTTAAAAGCCCCCACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACG-CTTTTTCTCTT-AAAGCCCACACAAGTTGGTGGCACCTT-C
* * **
2371586 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTC
1 AGTCCTCAAAGAGCAGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * *
2371645 TAGTCTTCAAAGAGCAGGACACTTTTTCTCTTAAAGCCCAGACAAGTTGGTGGCACCTTC
1 -AGTCCTCAAAGAGCAGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTTC
*
2371705 AGTCCTCAAAGAGCGGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
2371764 AGTCCTCAAAGAGCAGGACACCTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * *
2371823 AATCCTCAAAGAGCAGGACACCTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTTC
* * * *
2371882 AATCCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
2371941 AGTCCTCAAAGAGCAGGATGCTTTTGC-CTTTCAAAGCCCACACAAGTTGGTGGCACCTTC
1 AGTCCTCAAAGAGCAGGACGCTTTTTCTC-TT-AAAGCCCACACAAGTTGGTGGCACCTTC
* * *
2372001 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGTACCTTTC
1 AGTCCTCAAAGAGCAGGACGCTTTTTCTCTT-AAAGCCCACACAAGTTGGTGGCACC-TTC
* ** **
2372062 AGTCCCCAAAGAGCAGGAC-C-CCTT-TC--AAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTT-C
* * * **
2372117 AATCCTCAAAGAGCAGGACAC--CTT-TC--AAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTT-C
*
2372172 AGTCCTCAAAGAGCAGGACAC-----CTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACC-TTC
* * * *
2372227 AGTCCTCAAAGAGCAGGACGC--CTT-TC--AAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCAC-CTTC
2372282 AGTCCTCAAAGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
2372300 TACACTTTAT
Statistics
Matches: 650, Mismatches: 49, Indels: 37
0.88 0.07 0.05
Matches are distributed among these distances:
53 2 0.00
54 2 0.00
55 181 0.28
56 3 0.00
57 2 0.00
58 1 0.00
59 253 0.39
60 159 0.24
61 29 0.04
62 18 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (59 bp):
AGTCCTCAAAGAGCAGGACGCTTTTTCTCTTAAAGCCCACACAAGTTGGTGGCACCTTC
Found at i:2375320 original size:51 final size:53
Alignment explanation
Indices: 2375252--2375593 Score: 174
Period size: 52 Copynumber: 6.5 Consensus size: 53
2375242 AGTTTCTCAA
* * * * *
2375252 TTCTCCACAATTGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
* *
2375303 TT-TTCTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
* * * *** * * *
2375357 TTCTTCACAATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTAT-TTC-CAAAAACACCAAT
** ** * * * * *
2375410 CCCGTT-A-TTTCTGAGGGGATACTCTAACCCCGGTTTTA--TCGCTAAAACACTAAT
1 TTC-TTCACAATC---GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAAT
* *
2375464 TT-TTCCACAATCGGGGATACTCCAA-TCCCGATTTTATTTTC-AAAACGCCAATT
1 TTCTT-CACAATCGGGGATACTCCAACT-CCGATTTTATTTCCAAAAACACCAA-T
* * * *
2375517 TTCCTT--TAATCGTGGATACTCCAACTCCGATTTTATTTCTAAAAATACCAAT
1 TT-CTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
*
2375569 TT-TTCACAATCGAGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
2375594 CTCGTTATTT
Statistics
Matches: 216, Mismatches: 49, Indels: 51
0.68 0.16 0.16
Matches are distributed among these distances:
50 4 0.02
51 32 0.15
52 84 0.39
53 33 0.15
54 36 0.17
55 24 0.11
57 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.33
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:2375438 original size:28 final size:27
Alignment explanation
Indices: 2375369--2375441 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
2375359 CTTCACAATC
*
2375369 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
2375396 GGGGATACTCCAACCCCGTTATTTC-TGA
1 GGGGATACTCCAACCCCGTTA-ATCAT-A
*
2375424 GGGGATACTCTAACCCCG
1 GGGGATACTCCAACCCCG
2375442 GTTTTATCGC
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:2375577 original size:104 final size:103
Alignment explanation
Indices: 2375257--2375594 Score: 292
Period size: 104 Copynumber: 3.2 Consensus size: 103
2375247 CTCAATTCTC
* * * *
2375257 CACAATTGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTT-CTATAATCGGGGAT
1 CACAATCGGGGATACTCCAAC-CCGATTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
*
2375321 ACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTT
65 ACTCTAACTCCGATTTTATTT-CTAAAAACACCAATTT-TT
* ** * * * ** * *
2375362 CACAATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAA--CCCCGTTATTTCTG
1 CACAATCGGGGATACTCCAA-CCCGATTTTATTTTC---AAAACACCAATTTTCCTTTA-ATC--
* * ** *
2375423 AGGGGATACTCTAACCCCGGTTTTATCGCT-AAAACACTAATTTTT
59 -GGGGATACTCTAACTCCGATTTTATTTCTAAAAACACCAATTTTT
* *
2375468 CCACAATCGGGGATACTCCAATCCCGATTTTATTTTCAAAACGCCAATTTTCCTTTAATCGTGGA
1 -CACAATCGGGGATACTCCAA-CCCGATTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGA
* *
2375533 TACTCCAACTCCGATTTTATTTCTAAAAATACCAATTTTT
64 TACTCTAACTCCGATTTTATTTCTAAAAACACCAATTTTT
*
2375573 CACAATCGAGGATACTCCAACC
1 CACAATCGGGGATACTCCAACC
2375595 TCGTTATTTC
Statistics
Matches: 178, Mismatches: 40, Indels: 32
0.71 0.16 0.13
Matches are distributed among these distances:
103 8 0.04
104 42 0.24
105 37 0.21
106 18 0.10
107 38 0.21
108 6 0.03
109 29 0.16
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (103 bp):
CACAATCGGGGATACTCCAACCCGATTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATA
CTCTAACTCCGATTTTATTTCTAAAAACACCAATTTTT
Found at i:2375613 original size:28 final size:28
Alignment explanation
Indices: 2375577--2375653 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
2375567 ATTTTTCACA
* * *
2375577 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
2375605 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*** *
2375633 CGAGGGGATACTCCAATCCCG
1 ATCGGGGATACTCCAACCCCG
2375654 ATTTTTTTTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:2375622 original size:212 final size:212
Alignment explanation
Indices: 2375255--2375645 Score: 608
Period size: 212 Copynumber: 1.8 Consensus size: 212
2375245 TTCTCAATTC
* * *
2375255 TCCACAATTGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* *
2375320 TACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
* *
2375385 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCTAACCCCGGTTTTATC
131 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCTAACCCCGGTTTTATC
2375450 GCTAAAACACTAATTTT
196 GCTAAAACACTAATTTT
* * *
2375467 TCCACAATCGGGGATACTCCAA-TCCCGATTTTATTTTCAAAACGCCAATTTTCCTTTAATCGTG
1 TCCACAATCGGGGATACTCCAACT-CCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
* *
2375531 GATACTCCAACTCCGATTTTATTT-CTAAAAATACCAATTT-TTCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* *
2375594 CTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTC
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTC
2375646 CAATCCCGAT
Statistics
Matches: 162, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
211 29 0.18
212 101 0.62
213 32 0.20
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.32
Consensus pattern (212 bp):
TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCTAACCCCGGTTTTATC
GCTAAAACACTAATTTT
Found at i:2381921 original size:19 final size:19
Alignment explanation
Indices: 2381897--2381952 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
2381887 AGTATTGATA
2381897 CATTGTATCGATACATGCT
1 CATTGTATCGATACATGCT
* *
2381916 CATTGTATTGATACATACT
1 CATTGTATCGATACATGCT
2381935 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
2381953 AAACTAGCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (19 bp):
CATTGTATCGATACATGCT
Found at i:2387977 original size:109 final size:110
Alignment explanation
Indices: 2387853--2388076 Score: 441
Period size: 110 Copynumber: 2.0 Consensus size: 110
2387843 GTATTATTAG
2387853 TATTTTTACCA-TTTTTTTATGAAAAATCATGTTTGATGACCATTTTTGCTCAATGCCAATTATG
1 TATTTTTACCATTTTTTTTATGAAAAATCATGTTTGATGACCATTTTTGCTCAATGCCAATTATG
2387917 ATTGTTGTTGGTCACATGAAAAGTCATGATGCACTCTTGATGATT
66 ATTGTTGTTGGTCACATGAAAAGTCATGATGCACTCTTGATGATT
2387962 TATTTTTACCATTTTTTTTATGAAAAATCATGTTTGATGACCATTTTTGCTCAATGCCAATTATG
1 TATTTTTACCATTTTTTTTATGAAAAATCATGTTTGATGACCATTTTTGCTCAATGCCAATTATG
2388027 ATTGTTGTTGGTCACATGAAAAGTCATGATGCACTCTTGATGATT
66 ATTGTTGTTGGTCACATGAAAAGTCATGATGCACTCTTGATGATT
2388072 TATTT
1 TATTT
2388077 GAATAATTTT
Statistics
Matches: 114, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
109 11 0.10
110 103 0.90
ACGTcount: A:0.27, C:0.13, G:0.15, T:0.44
Consensus pattern (110 bp):
TATTTTTACCATTTTTTTTATGAAAAATCATGTTTGATGACCATTTTTGCTCAATGCCAATTATG
ATTGTTGTTGGTCACATGAAAAGTCATGATGCACTCTTGATGATT
Found at i:2388267 original size:20 final size:21
Alignment explanation
Indices: 2388242--2388280 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
2388232 ATTTTTCAGA
*
2388242 ATGTATCGATACAT-TGAATG
1 ATGTATCAATACATCTGAATG
2388262 ATGTATCAATACATCTGAA
1 ATGTATCAATACATCTGAA
2388281 AAAACCCAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (21 bp):
ATGTATCAATACATCTGAATG
Found at i:2389790 original size:13 final size:13
Alignment explanation
Indices: 2389772--2389798 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2389762 AATACATGGC
2389772 ACAATGTATCGAT
1 ACAATGTATCGAT
2389785 ACAATGTATCGAT
1 ACAATGTATCGAT
2389798 A
1 A
2389799 AATAATGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ACAATGTATCGAT
Found at i:2397517 original size:33 final size:33
Alignment explanation
Indices: 2397475--2397541 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
2397465 CGAGAGTTGA
*
2397475 TCACTTCACTTTCACAGCACATGAATGAGCACT
1 TCACTTCACTCTCACAGCACATGAATGAGCACT
* *
2397508 TCACTTCACTCTCACAGCGCATGGATGAGCACT
1 TCACTTCACTCTCACAGCACATGAATGAGCACT
2397541 T
1 T
2397542 TAGTGCACTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (33 bp):
TCACTTCACTCTCACAGCACATGAATGAGCACT
Found at i:2398477 original size:19 final size:19
Alignment explanation
Indices: 2398453--2398507 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
2398443 ATATTATACT
**
2398453 TTGTATCGATACATGTTAA
1 TTGTATCGATACATGACAA
*
2398472 TTGTATCGATACATCCACAA
1 TTGTATCGATACAT-GACAA
2398492 TTGTATCGATACATGA
1 TTGTATCGATACATGA
2398508 AACTAGTAGT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATGACAA
Found at i:2400808 original size:19 final size:20
Alignment explanation
Indices: 2400783--2400834 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
2400773 ATCATGCCTA
*
2400783 GTATCGAGACATGCTC-ATT
1 GTATCGATACATGCTCAATT
* *
2400802 TTATCGATACATACTCAATT
1 GTATCGATACATGCTCAATT
2400822 GTATCGATACATG
1 GTATCGATACATG
2400835 AAACTAGTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (20 bp):
GTATCGATACATGCTCAATT
Found at i:2400828 original size:20 final size:19
Alignment explanation
Indices: 2400743--2400833 Score: 69
Period size: 20 Copynumber: 4.6 Consensus size: 19
2400733 ACCCTCGAAA
*
2400743 GTATCGATACATA-TCCAGAT
1 GTATCGATACATACT-CA-TT
* *
2400763 GTATCGATACAT-CATGCCTA
1 GTATCGATACATAC-T-CATT
* *
2400783 GTATCGAGACATGCTCATT
1 GTATCGATACATACTCATT
*
2400802 TTATCGATACATACTCAATT
1 GTATCGATACATACTC-ATT
2400822 GTATCGATACAT
1 GTATCGATACAT
2400834 GAAACTAGTA
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
19 15 0.27
20 38 0.68
21 3 0.05
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.33
Consensus pattern (19 bp):
GTATCGATACATACTCATT
Found at i:2400906 original size:20 final size:20
Alignment explanation
Indices: 2400861--2400915 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
2400851 CCCTAAATGA
*
2400861 AATGTATCGATACATGGGAC
1 AATGTATCGATACATGAGAC
2400881 AATGTATCGATACATGAAGA-
1 AATGTATCGATACATG-AGAC
* *
2400901 ATTGTATTGATACAT
1 AATGTATCGATACAT
2400916 TATGCCCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 29 0.94
21 2 0.06
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATGAGAC
Found at i:2402680 original size:16 final size:16
Alignment explanation
Indices: 2402661--2402717 Score: 62
Period size: 16 Copynumber: 3.6 Consensus size: 16
2402651 TTCGGATTCT
2402661 TTCAAGTTTAGGCCTA
1 TTCAAGTTTAGGCCTA
* *
2402677 TTCAGGTTT-GAGCTTA
1 TTCAAGTTTAG-GCCTA
**
2402693 TTCGGGTTTAGGCCTA
1 TTCAAGTTTAGGCCTA
2402709 TTCAAGTTT
1 TTCAAGTTT
2402718 GAGACTTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 1 0.03
16 31 0.94
17 1 0.03
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (16 bp):
TTCAAGTTTAGGCCTA
Found at i:2402950 original size:19 final size:18
Alignment explanation
Indices: 2402937--2402974 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
2402927 AAAATCTATA
2402937 TTGATATATAAAATTAAT
1 TTGATATATAAAATTAAT
*
2402955 TTGTTATATAAAATTAAT
1 TTGATATATAAAATTAAT
2402973 TT
1 TT
2402975 TTAAATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (18 bp):
TTGATATATAAAATTAAT
Found at i:2403715 original size:21 final size:22
Alignment explanation
Indices: 2403691--2403741 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
2403681 TATATCAATG
*
2403691 AATGTTTTAGAGT-TATAAA-CA
1 AATGTTTTAGAATCT-TAAATCA
*
2403712 AATGTTTTTGAATCTTAAATCA
1 AATGTTTTAGAATCTTAAATCA
2403734 AATGTTTT
1 AATGTTTT
2403742 TAAGTAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.37, C:0.06, G:0.12, T:0.45
Consensus pattern (22 bp):
AATGTTTTAGAATCTTAAATCA
Found at i:2407629 original size:20 final size:20
Alignment explanation
Indices: 2407604--2407657 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
2407594 GTTTGAAGCA
* *
2407604 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATGCACC
*
2407624 ATGTATCGATACAGTGCACC
1 ATGTATCGATACAATGCACC
*
2407644 ATGTATTGATACAA
1 ATGTATCGATACAA
2407658 ATAGTGGTAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACAATGCACC
Found at i:2407736 original size:19 final size:20
Alignment explanation
Indices: 2407686--2407738 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
2407676 CTGCCAGTTT
**
2407686 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGAA
*
2407706 CATGTATTGATACAA-TGAA
1 CATGTATCGATACAATTGAA
*
2407725 CATGCATCGATACA
1 CATGTATCGATACA
2407739 TTATATCAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 14 0.50
20 14 0.50
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:2408189 original size:13 final size:13
Alignment explanation
Indices: 2408171--2408197 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2408161 ACATTATGCT
2408171 TTGTATCGATACA
1 TTGTATCGATACA
2408184 TTGTATCGATACA
1 TTGTATCGATACA
2408197 T
1 T
2408198 GAAATTGGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2408267 original size:33 final size:34
Alignment explanation
Indices: 2408225--2408294 Score: 90
Period size: 33 Copynumber: 2.1 Consensus size: 34
2408215 CCCTACCACT
* *
2408225 ATTTGTATCGATCCATGGT-ACAATGTATCGATAC
1 ATTTGTATCGATACATGATGA-AATGTATCGATAC
*
2408259 ATTT-TATCGATACATGATGAATTGTATCGATAC
1 ATTTGTATCGATACATGATGAAATGTATCGATAC
2408292 ATT
1 ATT
2408295 ACTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 27 0.84
34 5 0.16
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (34 bp):
ATTTGTATCGATACATGATGAAATGTATCGATAC
Found at i:2409519 original size:21 final size:23
Alignment explanation
Indices: 2409493--2409537 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
2409483 GCTCTCGTTT
*
2409493 AAAAAAA-TT-TTCCCTTTGATA
1 AAAAAAATTTCTTCCCCTTGATA
2409514 AAAAAAATTTCTTCCCCTTGATA
1 AAAAAAATTTCTTCCCCTTGATA
2409537 A
1 A
2409538 TCAATTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.33
22 2 0.10
23 12 0.57
ACGTcount: A:0.42, C:0.18, G:0.04, T:0.36
Consensus pattern (23 bp):
AAAAAAATTTCTTCCCCTTGATA
Found at i:2413030 original size:22 final size:22
Alignment explanation
Indices: 2413005--2413046 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
2412995 TTTTTTAAGA
2413005 TTTGACAAAGGGGGAGAAATGC
1 TTTGACAAAGGGGGAGAAATGC
*
2413027 TTTGATAAAGGGGGAGAAAT
1 TTTGACAAAGGGGGAGAAAT
2413047 ATGTTTATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.36, T:0.21
Consensus pattern (22 bp):
TTTGACAAAGGGGGAGAAATGC
Found at i:2413645 original size:20 final size:20
Alignment explanation
Indices: 2413622--2413688 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 20
2413612 CTCACCCATA
2413622 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
2413642 TGTATCGATAC---A----T
1 TGTATCGATACATTATGCTT
2413655 TGTATCGATACATTATGCTT
1 TGTATCGATACATTATGCTT
2413675 TGTATCGATACATT
1 TGTATCGATACATT
2413689 GTATCGATAC
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.30
16 1 0.03
17 1 0.03
20 26 0.65
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATTATGCTT
Found at i:2413659 original size:13 final size:13
Alignment explanation
Indices: 2413641--2413700 Score: 69
Period size: 13 Copynumber: 5.1 Consensus size: 13
2413631 ACATTATGCT
2413641 TTGTATCGATACA
1 TTGTATCGATACA
2413654 TTGTATCGATACA
1 TTGTATCGATACA
*
2413667 -T-TAT-G---CT
1 TTGTATCGATACA
2413674 TTGTATCGATACA
1 TTGTATCGATACA
2413687 TTGTATCGATACA
1 TTGTATCGATACA
2413700 T
1 T
2413701 GTTCATTGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.08
10 2 0.05
11 3 0.08
12 1 0.03
13 28 0.72
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2413664 original size:33 final size:33
Alignment explanation
Indices: 2413622--2413719 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
2413612 CTCACCCATA
2413622 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATTATGCTTTGTATCGATACAT
2413655 TGTATCGATACATTATGCTTTGTATCGATACAT
1 TGTATCGATACATTATGCTTTGTATCGATACAT
*
2413688 TGTATCGATACATGT-T-CATTGTATCGATACAT
1 TGTATCGATACAT-TATGCTTTGTATCGATACAT
2413720 GGACAATTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
32 15 0.24
33 47 0.75
34 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATTATGCTTTGTATCGATACAT
Found at i:2413730 original size:20 final size:19
Alignment explanation
Indices: 2413684--2413740 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
2413674 TTGTATCGAT
*
2413684 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
2413703 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
2413722 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
2413741 AAATTAGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:2413814 original size:33 final size:33
Alignment explanation
Indices: 2413772--2413836 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2413762 CCACTGTTTG
2413772 TATCGATACATGGTAT-AA-TGTATCGATACATTT
1 TATCGATACAT-G-ATGAATTGTATCGATACATTT
2413805 TATCGATACATGATGAATTGTATCGATACATT
1 TATCGATACATGATGAATTGTATCGATACATT
2413837 GCTTGTAACG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 2 0.07
32 3 0.10
33 25 0.83
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.38
Consensus pattern (33 bp):
TATCGATACATGATGAATTGTATCGATACATTT
Found at i:2415069 original size:22 final size:22
Alignment explanation
Indices: 2415035--2415078 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
2415025 GCTTTCGTTT
**
2415035 AAAAATATTTTCCTTTTGATAA
1 AAAAATATTTTCCCCTTGATAA
2415057 AAAAAT-TTCTTCCCCTTGATAA
1 AAAAATATT-TTCCCCTTGATAA
2415079 TCGGTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.41
Consensus pattern (22 bp):
AAAAATATTTTCCCCTTGATAA
Found at i:2416086 original size:22 final size:21
Alignment explanation
Indices: 2416051--2416100 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
2416041 ATTGTTGATG
*
2416051 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
2416071 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
2416092 AATTTGAAG
1 ATTTTGAAG
2416101 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:2416097 original size:21 final size:22
Alignment explanation
Indices: 2416058--2416100 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
2416048 ATGATTTTGA
* *
2416058 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
2416080 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
2416101 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:2420019 original size:3 final size:3
Alignment explanation
Indices: 2420011--2420049 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
2420001 TCCGAGTTAC
* *
2420011 CAT CAT CAT CAT CAT CAT CAT CAT TAT CAT CAT CTT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
2420050 TGTCTTTGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (3 bp):
CAT
Found at i:2421655 original size:20 final size:20
Alignment explanation
Indices: 2421630--2421683 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
2421620 GTTTGAAGCA
* *
2421630 ATGTATCGATACAATTTATC
1 ATGTATCGATACAATGTACC
2421650 ATGTATCGATACAATGTACC
1 ATGTATCGATACAATGTACC
*
2421670 ATGTATTGATACAA
1 ATGTATCGATACAA
2421684 ACAGTGGTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:2424156 original size:20 final size:21
Alignment explanation
Indices: 2424109--2424161 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
2424099 GCCAATCACT
*
2424109 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATTCTGTGCA
*
2424130 AGTATCGATACATT-TG-GTCA
1 TGTATCGATACATTCTGTG-CA
2424150 TGTATCGATACA
1 TGTATCGATACA
2424162 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 14 0.50
21 13 0.46
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTGTGCA
Found at i:2424167 original size:13 final size:13
Alignment explanation
Indices: 2424149--2424173 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2424139 ACATTTGGTC
2424149 ATGTATCGATACA
1 ATGTATCGATACA
2424162 ATGTATCGATAC
1 ATGTATCGATAC
2424174 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2426163 original size:21 final size:22
Alignment explanation
Indices: 2426139--2426183 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
2426129 GTGTGGGGGC
*
2426139 TGCCCGGTTGCGACCT-GGGAG
1 TGCCCGGTCGCGACCTAGGGAG
*
2426160 TG-CCGGTCGCGACCTAGTGAG
1 TGCCCGGTCGCGACCTAGGGAG
2426181 TGC
1 TGC
2426184 TGCCTAGAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.11, C:0.29, G:0.40, T:0.20
Consensus pattern (22 bp):
TGCCCGGTCGCGACCTAGGGAG
Found at i:2426636 original size:13 final size:13
Alignment explanation
Indices: 2426618--2426655 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
2426608 ATAAACCCTT
*
2426618 TGTATCGATACAC
1 TGTATCGATACAA
2426631 TGTATCGATACAA
1 TGTATCGATACAA
2426644 TGTATCGATACA
1 TGTATCGATACA
2426656 GAGAATGCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2426865 original size:8 final size:8
Alignment explanation
Indices: 2426847--2426877 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
2426837 TTTTCAACAT
2426847 CAAACATCA
1 CAAA-ATCA
2426856 CAAAATCA
1 CAAAATCA
2426864 CAAAATCA
1 CAAAATCA
2426872 CAAAAT
1 CAAAAT
2426878 TTAATCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.82
9 4 0.18
ACGTcount: A:0.61, C:0.26, G:0.00, T:0.13
Consensus pattern (8 bp):
CAAAATCA
Found at i:2429989 original size:27 final size:27
Alignment explanation
Indices: 2429957--2430013 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
2429947 ACATTTTCAA
*
2429957 TGCAAAATGAAGAAATGTTACCAATGG
1 TGCAAAATGAAGAAATGTTACCAACGG
2429984 TGCAAAATGAAGAAATGTTACCAACGG
1 TGCAAAATGAAGAAATGTTACCAACGG
2430011 TGC
1 TGC
2430014 CGATTCTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.21
Consensus pattern (27 bp):
TGCAAAATGAAGAAATGTTACCAACGG
Found at i:2432872 original size:19 final size:20
Alignment explanation
Indices: 2432823--2432874 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
2432813 TTACAAGCCA
*
2432823 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATATTGGG
*
2432843 ATGTATCGATACATATTGTG
1 ATGTATCGATACATATTGGG
*
2432863 -TGTATTGATACA
1 ATGTATCGATACA
2432875 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATATTGGG
Found at i:2432963 original size:20 final size:19
Alignment explanation
Indices: 2432916--2433001 Score: 67
Period size: 20 Copynumber: 4.6 Consensus size: 19
2432906 GCCAATCACT
*
2432916 TGTATCGATACATTCTTTGCA
1 TGTATCGATACATT-TGT-CA
*
2432937 AGTATCGATACATTTGGTCA
1 TGTATCGATACATTT-GTCA
2432957 TGTATCGATACA------A
1 TGTATCGATACATTTGTCA
*
2432970 TGTATTGATACATTTGGTCA
1 TGTATCGATACATTT-GTCA
2432990 TGTATCGATACA
1 TGTATCGATACA
2433002 ATGTATCGAT
Statistics
Matches: 52, Mismatches: 5, Indels: 17
0.70 0.07 0.23
Matches are distributed among these distances:
13 12 0.23
20 26 0.50
21 14 0.27
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATTTGTCA
Found at i:2432974 original size:13 final size:12
Alignment explanation
Indices: 2432955--2433013 Score: 54
Period size: 13 Copynumber: 5.1 Consensus size: 12
2432945 TACATTTGGT
2432955 CATGTATCGATA
1 CATGTATCGATA
*
2432967 CAATGTATTGATA
1 C-ATGTATCGATA
*
2432980 CAT-T-T-GGT-
1 CATGTATCGATA
2432988 CATGTATCGATA
1 CATGTATCGATA
2433000 CAATGTATCGATA
1 C-ATGTATCGATA
2433013 C
1 C
2433014 TGTGCATTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
8 3 0.08
9 3 0.08
10 2 0.05
11 3 0.08
12 4 0.11
13 23 0.61
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (12 bp):
CATGTATCGATA
Found at i:2432985 original size:33 final size:33
Alignment explanation
Indices: 2432938--2433013 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
2432928 TTCTTTGCAA
2432938 GTATCGATACATTTGGTCATGTATCGATACAAT
1 GTATCGATACATTTGGTCATGTATCGATACAAT
*
2432971 GTATTGATACATTTGGTCATGTATCGATACAAT
1 GTATCGATACATTTGGTCATGTATCGATACAAT
2433004 GTATCGATAC
1 GTATCGATAC
2433014 TGTGCATTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.37
Consensus pattern (33 bp):
GTATCGATACATTTGGTCATGTATCGATACAAT
Found at i:2433026 original size:33 final size:33
Alignment explanation
Indices: 2432938--2433033 Score: 122
Period size: 33 Copynumber: 2.9 Consensus size: 33
2432928 TTCTTTGCAA
* *
2432938 GTATCGATACATTTGGTCATGTATCGATACAAT
1 GTATCGATACATGTGATCATGTATCGATACAAT
* * *
2432971 GTATTGATACATTTGGTCATGTATCGATACAAT
1 GTATCGATACATGTGATCATGTATCGATACAAT
*
2433004 GTATCGATAC-TGTGCATTATGTATCGATAC
1 GTATCGATACATGTG-ATCATGTATCGATAC
2433034 TGTAGAAGGT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
32 3 0.05
33 54 0.95
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.38
Consensus pattern (33 bp):
GTATCGATACATGTGATCATGTATCGATACAAT
Found at i:2434935 original size:20 final size:20
Alignment explanation
Indices: 2434910--2434961 Score: 88
Period size: 20 Copynumber: 2.6 Consensus size: 20
2434900 AAAACCTAGA
2434910 TGTATCGATACAGA-ATTCTT
1 TGTATCGATACA-ATATTCTT
2434930 TGTATCGATACAATATTCTT
1 TGTATCGATACAATATTCTT
2434950 TGTATCGATACA
1 TGTATCGATACA
2434962 TCGTATCGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 1 0.03
20 30 0.97
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
TGTATCGATACAATATTCTT
Found at i:2435567 original size:30 final size:30
Alignment explanation
Indices: 2435498--2435587 Score: 112
Period size: 30 Copynumber: 3.0 Consensus size: 30
2435488 CTTCAAATAC
* *
2435498 CTTCTTAAAGTCCATGACTCAGTGGCAATCT
1 CTTCTCAAAGTCCACGACTCAGTGGC-ATCT
2435529 CTTCTCAAAG-CTCACGACTCAGTGGCAT-T
1 CTTCTCAAAGTC-CACGACTCAGTGGCATCT
*
2435558 TTGTCTCAAAGTCCACGACTCAGTGGCATC
1 CT-TCTCAAAGTCCACGACTCAGTGGCATC
2435588 CCTTTTAAGT
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
29 2 0.04
30 27 0.52
31 23 0.44
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (30 bp):
CTTCTCAAAGTCCACGACTCAGTGGCATCT
Found at i:2435642 original size:27 final size:26
Alignment explanation
Indices: 2435566--2435647 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 26
2435556 TTTTGTCTCA
2435566 AAGTCCACGACTCAGTGGCATCCCTTTT
1 AAGTCCACGACTCA-TGGCA-CCCTTTT
* * * **
2435594 AAGTCCACAATTCCCTTTCACCCTTTT
1 AAGTCCACGACT-CATGGCACCCTTTT
2435621 AAGTCCACGACTCTATGGCACCCTTTT
1 AAGTCCACGACTC-ATGGCACCCTTTT
2435648 TCCCTTTTAA
Statistics
Matches: 42, Mismatches: 10, Indels: 5
0.74 0.18 0.09
Matches are distributed among these distances:
26 1 0.02
27 27 0.64
28 13 0.31
29 1 0.02
ACGTcount: A:0.22, C:0.34, G:0.12, T:0.32
Consensus pattern (26 bp):
AAGTCCACGACTCATGGCACCCTTTT
Found at i:2435698 original size:34 final size:34
Alignment explanation
Indices: 2435615--2435778 Score: 211
Period size: 34 Copynumber: 4.8 Consensus size: 34
2435605 TCCCTTTCAC
* ** * *
2435615 CCTTTTAAGTCCACGACTCTATGGCACCCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
* * *
2435649 CCCTTTTAAGCCCACACCTCCATGGCATCCTTGTT
1 -CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
*
2435684 CCTTTTAAGTCCACAACTCTGTGGCATCCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
* *
2435718 CCTTTTAATTCCACAACTTCGTGGCATCCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
*
2435752 CCTTTTAAATCCACAACTCCGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAT
2435779 GTTTCTCCTG
Statistics
Matches: 114, Mismatches: 15, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
34 86 0.75
35 28 0.25
ACGTcount: A:0.19, C:0.33, G:0.12, T:0.36
Consensus pattern (34 bp):
CCTTTTAAGTCCACAACTCCGTGGCATCCTTGTT
Found at i:2436173 original size:49 final size:49
Alignment explanation
Indices: 2435905--2436420 Score: 641
Period size: 48 Copynumber: 10.8 Consensus size: 49
2435895 GGCATCTTCT
* * * *
2435905 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGGCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT---ATC
* * * * *
2435957 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGTACATTGGCACC-TCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
2436005 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * *
2436054 TTTAAGT-CAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
2436101 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * * * *
2436150 TTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACC-TCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
*
2436198 TTTAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTTATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* *
2436247 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC----TC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* * *
2436292 --CAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* *
2436339 TTTAAGTCCAATGTAGCTGGCCTTGAATCAACATATTGGCA-C-----C
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
* *
2436382 TTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
2436421 TGCCTGTCGT
Statistics
Matches: 406, Mismatches: 48, Indels: 29
0.84 0.10 0.06
Matches are distributed among these distances:
43 72 0.18
45 2 0.00
47 12 0.03
48 152 0.37
49 130 0.32
51 1 0.00
52 37 0.09
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (49 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC
Found at i:2436231 original size:97 final size:97
Alignment explanation
Indices: 2435905--2436420 Score: 811
Period size: 97 Copynumber: 5.4 Consensus size: 97
2435895 GGCATCTTCT
* * * *
2435905 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGGCACCTTTAAGTCCAATG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT---ATCTTTAAGTCCAATG
*
2435970 TAGCTGGCCTTGAATCAGTACATTGGCACCTCACC
63 TAGCTGGCCTTGAATCAGCACATTGGCACCTCACC
2436005 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGT-CAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
2436069 CTGGCCTTGAATCAGCACATTGGCACCTCACC
66 CTGGCCTTGAATCAGCACATTGGCACCTCACC
2436101 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
*
2436166 CTAGCCTTGAATCAGCACATTGGCACCTCACC
66 CTGGCCTTGAATCAGCACATTGGCACCTCACC
*
2436198 TTTAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
2436263 CTGGCCTTGAATCAGCACATTGGCACCT--CC
66 CTGGCCTTGAATCAGCACATTGGCACCTCACC
* *
2436293 ---AAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
* *
2436355 CTGGCCTTGAATCAACATATTGG-----CACC
66 CTGGCCTTGAATCAGCACATTGGCACCTCACC
* *
2436382 TTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGG
2436421 TGCCTGTCGT
Statistics
Matches: 395, Mismatches: 15, Indels: 20
0.92 0.03 0.05
Matches are distributed among these distances:
89 2 0.01
92 114 0.29
95 2 0.01
96 95 0.24
97 139 0.35
100 43 0.11
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (97 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGGCACCTCACC
Found at i:2439580 original size:52 final size:52
Alignment explanation
Indices: 2439495--2439619 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
2439485 ATATGAAAAG
* *
2439495 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
2439547 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
2439599 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
2439620 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:2439632 original size:52 final size:51
Alignment explanation
Indices: 2439495--2439639 Score: 211
Period size: 52 Copynumber: 2.8 Consensus size: 51
2439485 ATATGAAAAG
*
2439495 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
2439547 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
2439599 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
2439640 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:2439646 original size:13 final size:13
Alignment explanation
Indices: 2439628--2439652 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2439618 CAAAGATCAG
2439628 TGTATCGATACAA
1 TGTATCGATACAA
2439641 TGTATCGATACA
1 TGTATCGATACA
2439653 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2439734 original size:33 final size:33
Alignment explanation
Indices: 2439692--2439761 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
2439682 GGCAGTAGCT
2439692 TACATTGTATCGATACAAAAAAATATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
* ***
2439725 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAAAAAAATATGTATCGA
2439758 TACA
1 TACA
2439762 AATCGTTGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (33 bp):
TACATTGTATCGATACAAAAAAATATGTATCGA
Found at i:2439735 original size:13 final size:13
Alignment explanation
Indices: 2439717--2439741 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2439707 CAAAAAAATA
2439717 TGTATCGATACAT
1 TGTATCGATACAT
2439730 TGTATCGATACA
1 TGTATCGATACA
2439742 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2440113 original size:22 final size:22
Alignment explanation
Indices: 2440046--2440113 Score: 54
Period size: 22 Copynumber: 3.1 Consensus size: 22
2440036 ACATTGGCAT
2440046 CTTTAAGTCCAATATCGCTGGC
1 CTTTAAGTCCAATATCGCTGGC
* * *
2440068 CTTGAA-TCAGCACAT-TGGC--AC
1 CTTTAAGTC--CA-ATATCGCTGGC
2440089 CTTTAAGTCCAATATCGCTGGC
1 CTTTAAGTCCAATATCGCTGGC
2440111 CTT
1 CTT
2440114 GAATCAGCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 8 0.24
22 11 0.33
23 5 0.15
24 2 0.06
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.31
Consensus pattern (22 bp):
CTTTAAGTCCAATATCGCTGGC
Found at i:2440177 original size:92 final size:89
Alignment explanation
Indices: 2440003--2440275 Score: 327
Period size: 92 Copynumber: 3.0 Consensus size: 89
2439993 CCTTTGTCAT
* * * * *
2440003 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC---ATCTTTAAGTCCAATATCGCT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGCCTTTATCTTTAAGTCCAATGTCGCT
2440065 GGCCTTGAATCAGCACATTGGCAC
66 GGCCTTGAATCAGCACATTGGCAC
*
2440089 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG---CCTTTATCTTTAAGTCCAATGTC
*
2440154 GCTGGCCTTGAATCAGCATATTGGCAC
63 GCTGGCCTTGAATCAGCACATTGGCAC
* * * **
2440181 CTTTAAGTCTAATATCGTTGGCCTTGAATCAGTATATTGGTGCCTTTGTCATCTTTAAAACCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA-T--TGCC-TT-T-ATCTTTAAGTCCAAT
*
2440246 GTCGCTGGCCTTGAATCAGCACATTAGCAC
60 GTCGCTGGCCTTGAATCAGCACATTGGCAC
2440276 AAACCCAATA
Statistics
Matches: 160, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
86 36 0.22
89 1 0.01
92 77 0.48
93 3 0.02
94 1 0.01
95 42 0.26
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (89 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGCCTTTATCTTTAAGTCCAATGTCGCT
GGCCTTGAATCAGCACATTGGCAC
Found at i:2440227 original size:43 final size:43
Alignment explanation
Indices: 2440003--2440220 Score: 283
Period size: 43 Copynumber: 4.9 Consensus size: 43
2439993 CCTTTGTCAT
* * * *
2440003 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
*
2440046 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
*
2440089 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACACC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C
* *
2440133 TTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCAC
1 -----CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
* * *
2440181 CTTTAAGTCTAATATCGTTGGCCTTGAATCAGTATATTGG
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
2440221 TGCCTTTGTC
Statistics
Matches: 156, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
43 115 0.74
44 1 0.01
48 1 0.01
49 39 0.25
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.33
Consensus pattern (43 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
Found at i:2440963 original size:19 final size:19
Alignment explanation
Indices: 2440939--2441004 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
2440929 TTTCAACGAT
*
2440939 TTGTATTGATACATAAGTG
1 TTGTATCGATACATAAGTG
2440958 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
2440972 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
2440990 TTGTATCGATACATA
1 TTGTATCGATACATA
2441005 TGAAGCTACT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
15 2 0.05
17 2 0.05
19 25 0.62
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:2440976 original size:32 final size:32
Alignment explanation
Indices: 2440940--2441002 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
2440930 TTCAACGATT
*
2440940 TGTATTGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
2440972 TGTATCGATACATAAGTGTTGTATCGATACA
1 TGTATCGATACATAAGTGTTGTATCGATACA
2441003 TATGAAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:2440977 original size:13 final size:13
Alignment explanation
Indices: 2440959--2440983 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2440949 ACATAAGTGT
2440959 TGTATCGATACAA
1 TGTATCGATACAA
2440972 TGTATCGATACA
1 TGTATCGATACA
2440984 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2441064 original size:13 final size:13
Alignment explanation
Indices: 2441046--2441070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2441036 ATTACTCAAA
2441046 TGTATCGATACAT
1 TGTATCGATACAT
2441059 TGTATCGATACA
1 TGTATCGATACA
2441071 CTGAACTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2443285 original size:24 final size:26
Alignment explanation
Indices: 2443258--2443311 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
2443248 TCAAAATTTT
2443258 ATTCAT-C-GGGGACACTCCAACCCC
1 ATTCATCCAGGGGACACTCCAACCCC
*
2443282 ATTCTTCCGAGGGGACACTCCAACCCC
1 ATTCATCC-AGGGGACACTCCAACCCC
2443309 ATT
1 ATT
2443312 TTCAACCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 1 0.04
27 20 0.77
ACGTcount: A:0.24, C:0.39, G:0.17, T:0.20
Consensus pattern (26 bp):
ATTCATCCAGGGGACACTCCAACCCC
Found at i:2446127 original size:21 final size:22
Alignment explanation
Indices: 2446086--2446129 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
2446076 TTTTAAACGA
*
2446086 TTATCAAGGGGGAGAAAATTTT
1 TTATCAAAGGGGAGAAAATTTT
2446108 TTATCAAAGGGGAG-AAATTTT
1 TTATCAAAGGGGAGAAAATTTT
2446129 T
1 T
2446130 AAACGAGAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.36, C:0.05, G:0.25, T:0.34
Consensus pattern (22 bp):
TTATCAAAGGGGAGAAAATTTT
Found at i:2446787 original size:13 final size:13
Alignment explanation
Indices: 2446769--2446793 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2446759 CATGGCACAT
2446769 TGTATCGATACAA
1 TGTATCGATACAA
2446782 TGTATCGATACA
1 TGTATCGATACA
2446794 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2446791 original size:33 final size:32
Alignment explanation
Indices: 2446749--2446813 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 32
2446739 TACCACTACT
2446749 TGTATCGATACATG-GCACATTGTATCGATACAA
1 TGTATCGATACATGAG-A-ATTGTATCGATACAA
2446782 TGTATCGATACATGATGAATTGTATCGATACA
1 TGTATCGATACATGA-GAATTGTATCGATACA
2446814 TTGCTTCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 28 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.32
Consensus pattern (32 bp):
TGTATCGATACATGAGAATTGTATCGATACAA
Found at i:2448229 original size:2 final size:2
Alignment explanation
Indices: 2448224--2448256 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
2448214 TATATATATA
*
2448224 TG TG TG TG TG TG TG TG TG TG TG TG TA TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
2448257 ATAATATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.03, C:0.00, G:0.45, T:0.52
Consensus pattern (2 bp):
TG
Found at i:2449598 original size:51 final size:52
Alignment explanation
Indices: 2449503--2449609 Score: 144
Period size: 51 Copynumber: 2.1 Consensus size: 52
2449493 ATGCATTTGA
* * *
2449503 AATTCTAGTTGTTGGACTCAATGTATCGATACAATTCATAATGTATCGATAC
1 AATTATAGTCGTTGGACTCAATGTATCGATACAATTCACAATGTATCGATAC
* * * *
2449555 AATTATAGTCGTTGGGCTTAAT-TATCGATACAATTTACCATGTATCGATAC
1 AATTATAGTCGTTGGACTCAATGTATCGATACAATTCACAATGTATCGATAC
2449606 AATT
1 AATT
2449610 CACTTAAGGT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
51 30 0.62
52 18 0.38
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (52 bp):
AATTATAGTCGTTGGACTCAATGTATCGATACAATTCACAATGTATCGATAC
Found at i:2449691 original size:13 final size:13
Alignment explanation
Indices: 2449673--2449697 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2449663 TAGAAAGAAC
2449673 ATGTATCGATACA
1 ATGTATCGATACA
2449686 ATGTATCGATAC
1 ATGTATCGATAC
2449698 TAAGCAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2450288 original size:16 final size:17
Alignment explanation
Indices: 2450261--2450292 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
2450251 AATTATGCAA
2450261 TCCTTCAAAACAATCTT
1 TCCTTCAAAACAATCTT
2450278 TCCTT-AAAACAATCT
1 TCCTTCAAAACAATCT
2450293 CCCATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.34
Consensus pattern (17 bp):
TCCTTCAAAACAATCTT
Found at i:2456613 original size:13 final size:13
Alignment explanation
Indices: 2456595--2456619 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2456585 ATGTTGCACA
2456595 GTATCGATACATT
1 GTATCGATACATT
2456608 GTATCGATACAT
1 GTATCGATACAT
2456620 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2456632 original size:20 final size:21
Alignment explanation
Indices: 2456607--2456659 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
2456597 ATCGATACAT
**
2456607 TGTATCGATACATGACCAA-A
1 TGTATCGATACATGAAAAAGA
*
2456627 TGTATCGATACTTGAAAAAGA
1 TGTATCGATACATGAAAAAGA
2456648 TGTATCGATACA
1 TGTATCGATACA
2456660 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAAGA
Found at i:2456729 original size:13 final size:13
Alignment explanation
Indices: 2456711--2456735 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2456701 ACACACAGTA
2456711 TGTATCGATACAT
1 TGTATCGATACAT
2456724 TGTATCGATACA
1 TGTATCGATACA
2456736 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2456732 original size:32 final size:33
Alignment explanation
Indices: 2456691--2456758 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
2456681 GTAGCCAAAC
**
2456691 TTGTATCGATACA-CACAGTATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
*
2456723 TTGTATCGATACACCATAAAATGTATCGATACA
1 TTGTATCGATACACCACAAAATGTATCGATACA
2456756 TTG
1 TTG
2456759 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCACAAAATGTATCGATACA
Found at i:2458357 original size:3 final size:3
Alignment explanation
Indices: 2458343--2458373 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
2458333 CATCAAGGAC
*
2458343 GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
2458374 GTGACTCAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:2465400 original size:13 final size:13
Alignment explanation
Indices: 2465382--2465406 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2465372 ATGTTGCACA
2465382 GTATCGATACATT
1 GTATCGATACATT
2465395 GTATCGATACAT
1 GTATCGATACAT
2465407 AACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Done.