Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold53
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4419549
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 41486 characters in sequence are not A, C, G, or T
File 18 of 28
Found at i:2649823 original size:28 final size:28
Alignment explanation
Indices: 2649779--2649835 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
2649769 TCTCAGGCAC
*
2649779 AGCCCCATCTTCGTCAACCACCATCTTT
1 AGCCCCATCTTCATCAACCACCATCTTT
2649807 AGCCCCATCTTCATCAACCACCATCTTT
1 AGCCCCATCTTCATCAACCACCATCTTT
2649835 A
1 A
2649836 ACTTGATCTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.42, G:0.05, T:0.28
Consensus pattern (28 bp):
AGCCCCATCTTCATCAACCACCATCTTT
Found at i:2653112 original size:21 final size:21
Alignment explanation
Indices: 2653086--2653141 Score: 80
Period size: 19 Copynumber: 2.8 Consensus size: 21
2653076 CTGCCAATTT
**
2653086 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAATTTGAA
2653107 CATGTATCGATAC-A-TTGAA
1 CATGTATCGATACAATTTGAA
2653126 CATGTATCGATACAAT
1 CATGTATCGATACAAT
2653142 GTATCGATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 16 0.52
20 2 0.06
21 13 0.42
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34
Consensus pattern (21 bp):
CATGTATCGATACAATTTGAA
Found at i:2653145 original size:13 final size:13
Alignment explanation
Indices: 2653127--2653153 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2653117 TACATTGAAC
2653127 ATGTATCGATACA
1 ATGTATCGATACA
2653140 ATGTATCGATACA
1 ATGTATCGATACA
2653153 A
1 A
2653154 AATAGCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2655626 original size:13 final size:13
Alignment explanation
Indices: 2655608--2655635 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2655598 AATAGTACCT
2655608 AATGTATCGATAC
1 AATGTATCGATAC
2655621 AATGTATCGATAC
1 AATGTATCGATAC
2655634 AA
1 AA
2655636 GGAATGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:2661806 original size:33 final size:33
Alignment explanation
Indices: 2661769--2661835 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 33
2661759 GTTACAAGCT
2661769 ATGTATCGATACATT-T-CTTCATGTATCGATACA
1 ATGTATCGATACATTGTAC--CATGTATCGATACA
*
2661802 ATGTATCGATACGTTGTACCATGTATCGATACA
1 ATGTATCGATACATTGTACCATGTATCGATACA
2661835 A
1 A
2661836 ATAGTGATAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 29 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:2661819 original size:13 final size:13
Alignment explanation
Indices: 2661789--2661813 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2661779 ACATTTCTTC
2661789 ATGTATCGATACA
1 ATGTATCGATACA
2661802 ATGTATCGATAC
1 ATGTATCGATAC
2661814 GTTGTACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2661890 original size:21 final size:20
Alignment explanation
Indices: 2661864--2661937 Score: 80
Period size: 20 Copynumber: 3.7 Consensus size: 20
2661854 CTGCCAATTT
* *
2661864 CATGTATCGATACAATTTATC
1 CATGTATCGATACAATTGA-A
2661885 CATGTATCGATAC-ATTGAA
1 CATGTATCGATACAATTGAA
* *
2661904 CATGTATCGATACAA-AGCAG
1 CATGTATCGATACAATTG-AA
2661924 CATGTATCGATACA
1 CATGTATCGATACA
2661938 TCTGGGTGTG
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
19 14 0.30
20 20 0.43
21 13 0.28
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:2661929 original size:20 final size:19
Alignment explanation
Indices: 2661885--2661937 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
2661875 ACAATTTATC
**
2661885 CATGTATCGATACATTGAA
1 CATGTATCGATACAAAGAA
*
2661904 CATGTATCGATACAAAGCAG
1 CATGTATCGATACAAAG-AA
2661924 CATGTATCGATACA
1 CATGTATCGATACA
2661938 TCTGGGTGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (19 bp):
CATGTATCGATACAAAGAA
Found at i:2663143 original size:79 final size:80
Alignment explanation
Indices: 2663000--2663391 Score: 404
Period size: 79 Copynumber: 4.9 Consensus size: 80
2662990 AATTAATGGA
* * * * *
2663000 TTAGAGTATCCCCTCGAAAATAACGGGGTTGGAATATCCTCGATGGTGGAAAATCGATATTTTAG
1 TTAGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATAGTGGAAAATCAATATTTTAG
*
2663065 AAATAAAACTAG-GG
66 AAATAAAACTCGAGG
* * * *
2663079 TT-GAAGTATCCCTTTGAAAATAACGGGGTTGGAGTATCCCCTATGGTGGAAAATCAATACTTTA
1 TTAG-AGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATAGTGGAAAATCAATATTTTA
2663143 GAAATAAAA-TCGAGG
65 GAAATAAAACTCGAGG
** * ** * *
2663158 TTAGAGTATCCCCTCCAAAATAATGGGGTTAAAGTAT-CCCGATAGTAGAAAAATCAATGTTTTA
1 TTAGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATAGT-GGAAAATCAATATTTTA
2663222 -AGAATAAAAC-CGAGG
65 GA-AATAAAACTCGAGG
* * * ** * *
2663237 TTAGAGTATTCCC-TCAATAATAATGGGGTTAAAGTATCCTCGATAGTGAAAAAATCAATATTTT
1 TTAGAGTATCCCCTTGAA-AATAACGGGGTTGGAGTATCCCCGATAGTG-GAAAATCAATATTTT
* *
2663301 AGGAATAAAA-TCGGGG
64 AGAAATAAAACTCGAGG
* * * *
2663317 TTAGAGTATCCTCTTGAAAATAACGGGGTTGGAATATCCCCAATAGTGGAAAATCGATATTTTAG
1 TTAGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATAGTGGAAAATCAATATTTTAG
2663382 AAATGAAAAC
66 AAAT-AAAAC
2663392 ATCAATGAAA
Statistics
Matches: 262, Mismatches: 37, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
78 14 0.05
79 171 0.65
80 74 0.28
81 3 0.01
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (80 bp):
TTAGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATAGTGGAAAATCAATATTTTAG
AAATAAAACTCGAGG
Found at i:2663211 original size:158 final size:158
Alignment explanation
Indices: 2663000--2663392 Score: 449
Period size: 158 Copynumber: 2.5 Consensus size: 158
2662990 AATTAATGGA
*
2663000 TTAGAGTATCCCCTCGAAAATAACGGGGTTGGAATATCCTCGATGGTGGAAAATCGATATTTTAG
1 TTAGAGTATCCCCTCGAAAATAACGGGGTTGGAATATCC-CGATAGTGGAAAATCGATATTTTAG
* ** * *
2663065 AAATAAAACTAG-GGTT-GAAGTA-TCCCTTTGAA-AATAACGGGGTTGGAGTATCCCCTATGGT
65 AAATAAAAC-AGAGGTTAG-AGTATTCCC--TCAATAATAACGGGGTTAAAGTATCCCCGATAGT
*
2663126 G-GAAAATCAATACTTTAGAAATAAAATCGAGG
126 GAAAAAATCAATACTTTAGAAATAAAATCGAGG
* * * * * *
2663158 TTAGAGTATCCCCTCCAAAATAATGGGGTT-AAAGTATCCCGATAGTAGAAAAATCAATGTTTTA
1 TTAGAGTATCCCCTCGAAAATAACGGGGTTGGAA-TATCCCGATAGT-GGAAAATCGATATTTTA
* * *
2663222 -AGAATAAAACCGAGGTTAGAGTATTCCCTCAATAATAATGGGGTTAAAGTATCCTCGATAGTGA
64 GA-AATAAAACAGAGGTTAGAGTATTCCCTCAATAATAACGGGGTTAAAGTATCCCCGATAGTGA
* * *
2663286 AAAAATCAATATTTTAGGAATAAAATCGGGG
128 AAAAATCAATACTTTAGAAATAAAATCGAGG
* * *
2663317 TTAGAGTATCCTCTTGAAAATAACGGGGTTGGAATATCCCCAATAGTGGAAAATCGATATTTTAG
1 TTAGAGTATCCCCTCGAAAATAACGGGGTTGGAATAT-CCCGATAGTGGAAAATCGATATTTTAG
2663382 AAATGAAAACA
65 AAAT-AAAACA
2663393 TCAATGAAAT
Statistics
Matches: 194, Mismatches: 29, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
157 13 0.07
158 87 0.45
159 78 0.40
160 16 0.08
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.27
Consensus pattern (158 bp):
TTAGAGTATCCCCTCGAAAATAACGGGGTTGGAATATCCCGATAGTGGAAAATCGATATTTTAGA
AATAAAACAGAGGTTAGAGTATTCCCTCAATAATAACGGGGTTAAAGTATCCCCGATAGTGAAAA
AATCAATACTTTAGAAATAAAATCGAGG
Found at i:2664526 original size:14 final size:14
Alignment explanation
Indices: 2664509--2664536 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2664499 GATAGAGTGT
2664509 TTGAAAAAAAAAAA
1 TTGAAAAAAAAAAA
2664523 TTGAAAAAAAAAAA
1 TTGAAAAAAAAAAA
2664537 ATTTATCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.79, C:0.00, G:0.07, T:0.14
Consensus pattern (14 bp):
TTGAAAAAAAAAAA
Found at i:2664570 original size:21 final size:21
Alignment explanation
Indices: 2664546--2664602 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
2664536 AATTTATCCA
2664546 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
2664567 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
2664588 AATGTATCGATACAT
1 AATGTATCGATACAT
2664603 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:2664697 original size:13 final size:13
Alignment explanation
Indices: 2664679--2664735 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
2664669 ATATAAGTTT
2664679 TGTATCGATACAA
1 TGTATCGATACAA
2664692 TGTATCGATACATAAGTA
1 TGTATCGATAC---A--A
2664710 TTGTATCGATACAA
1 -TGTATCGATACAA
2664724 TGTATCGATACA
1 TGTATCGATACA
2664736 TAAGTATTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
14 1 0.03
16 2 0.05
18 1 0.03
19 11 0.29
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2664697 original size:32 final size:32
Alignment explanation
Indices: 2664660--2664754 Score: 172
Period size: 32 Copynumber: 3.0 Consensus size: 32
2664650 TTCAACAATT
* *
2664660 TGTATCGATATATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
2664692 TGTATCGATACATAAGTATTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
2664724 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
2664755 TGATTAGCTA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:2664716 original size:19 final size:19
Alignment explanation
Indices: 2664659--2664755 Score: 92
Period size: 19 Copynumber: 5.7 Consensus size: 19
2664649 ATTCAACAAT
* *
2664659 TTGTATCGATATATAAGTT
1 TTGTATCGATACATAAGTA
2664678 TTGTATCGATAC---A--A
1 TTGTATCGATACATAAGTA
2664692 -TGTATCGATACATAAGTA
1 TTGTATCGATACATAAGTA
2664710 TTGTATCGATAC---A--A
1 TTGTATCGATACATAAGTA
2664724 -TGTATCGATACATAAGTA
1 TTGTATCGATACATAAGTA
2664742 TTGTATCGATACAT
1 TTGTATCGATACAT
2664756 GATTAGCTAC
Statistics
Matches: 64, Mismatches: 2, Indels: 24
0.71 0.02 0.27
Matches are distributed among these distances:
13 22 0.34
14 1 0.02
16 4 0.06
18 2 0.03
19 35 0.55
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.38
Consensus pattern (19 bp):
TTGTATCGATACATAAGTA
Found at i:2664815 original size:13 final size:13
Alignment explanation
Indices: 2664797--2664823 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2664787 CATTTTTCTG
2664797 TGTATCGATACAT
1 TGTATCGATACAT
2664810 TGTATCGATACAT
1 TGTATCGATACAT
2664823 T
1 T
2664824 TGGAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2667341 original size:28 final size:27
Alignment explanation
Indices: 2667274--2667342 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
2667264 CTTCACAATC
**
2667274 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCAGA
* *
2667301 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTA-ATCAGA
2667329 GGGGATACTCCAAC
1 GGGGATACTCCAAC
2667343 TCCGGTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.22
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCAGA
Found at i:2667414 original size:52 final size:53
Alignment explanation
Indices: 2667329--2667498 Score: 172
Period size: 52 Copynumber: 3.3 Consensus size: 53
2667319 TTATTTCCGA
* * *
2667329 GGGGATACTCCAACTCCGGTTTTA--TCGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAATTTTTCCACAATC
* * * * **
2667381 GGGGATACTTCAA-TCCTGGTTTTATTTTC-AAAACGCCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACTCC-GATTTTATTTCCAAAAACACCAATTTTTCC-ACAATC
*
2667433 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCCACAATC
*
2667485 GAGGATACTCCAAC
1 GGGGATACTCCAAC
2667499 CTCGTTATTT
Statistics
Matches: 97, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
51 9 0.09
52 70 0.72
53 13 0.13
54 5 0.05
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (53 bp):
GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCCACAATC
Found at i:2667519 original size:28 final size:28
Alignment explanation
Indices: 2667487--2667558 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
2667477 TCACAATCGA
* * *
2667487 GGATACTCCAACCTCGTTA-TTTCATTGG
1 GGATACTCCAACCCCGTTACTTCCA-AGG
2667515 GGATACTCCAACCCCGTTACTTCCAAGG
1 GGATACTCCAACCCCGTTACTTCCAAGG
2667543 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
2667559 GCTTTATTCC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 36 0.90
29 4 0.10
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTTCCAAGG
Found at i:2680131 original size:11 final size:10
Alignment explanation
Indices: 2680115--2680168 Score: 56
Period size: 11 Copynumber: 5.2 Consensus size: 10
2680105 CTTCTCTTCA
2680115 AAAAAAAAAG
1 AAAAAAAAAG
2680125 CAAAAAAAAA-
1 -AAAAAAAAAG
2680135 AAAAAACAAAG
1 AAAAAA-AAAG
* *
2680146 AAAAAGAGAG
1 AAAAAAAAAG
2680156 AAAAGAAAAAG
1 AAAA-AAAAAG
2680167 AA
1 AA
2680169 CCTACTTAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
9 6 0.17
10 10 0.28
11 20 0.56
ACGTcount: A:0.83, C:0.04, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:2680136 original size:17 final size:17
Alignment explanation
Indices: 2680114--2680150 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
2680104 CCTTCTCTTC
*
2680114 AAAAAAAAAAGCAAA-A
1 AAAAAAAAAAACAAAGA
2680130 AAAAAAAAAAACAAAGA
1 AAAAAAAAAAACAAAGA
2680147 AAAA
1 AAAA
2680151 GAGAGAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.89, C:0.05, G:0.05, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAACAAAGA
Found at i:2681212 original size:26 final size:26
Alignment explanation
Indices: 2681182--2681322 Score: 70
Period size: 26 Copynumber: 5.2 Consensus size: 26
2681172 AAGTTGGTGG
*
2681182 CACCTTTCAGTCCTCAAAGAGCAGGA
1 CACCTTTCAGTCCACAAAGAGCAGGA
* * * **
2681208 CACCTCTTAAAGCCCACACAAGTTGGTGG-
1 CACCT-TT-CAGTCCACA-AAG-AGCAGGA
*
2681237 CACCTTTCAGTCCCCAAAGAGCAGGA
1 CACCTTTCAGTCCACAAAGAGCAGGA
* * * **
2681263 CACCTCTTAAAGCCCACACAAGTTGGTGG-
1 CACCT-TT-CAGTCCACA-AAG-AGCAGGA
* *
2681292 CACCTTTCAATCCCCAAAGAGCAGGA
1 CACCTTTCAGTCCACAAAGAGCAGGA
2681318 CACCT
1 CACCT
2681323 CTTAAAGCCC
Statistics
Matches: 80, Mismatches: 25, Indels: 20
0.64 0.20 0.16
Matches are distributed among these distances:
25 6 0.08
26 21 0.26
27 15 0.19
28 16 0.20
29 16 0.20
30 6 0.08
ACGTcount: A:0.30, C:0.33, G:0.18, T:0.18
Consensus pattern (26 bp):
CACCTTTCAGTCCACAAAGAGCAGGA
Found at i:2681307 original size:29 final size:29
Alignment explanation
Indices: 2681220--2681307 Score: 69
Period size: 29 Copynumber: 3.1 Consensus size: 29
2681210 CCTCTTAAAG
*
2681220 CCCACACAAGTTGGTGGCACCTTTCAGTC
1 CCCACACAAGTTGGTGGCACCTTTCAATC
** * **
2681249 CCCA-A-AGAG-CAG-GACACCTCTT-AAAG
1 CCCACACA-AGTTGGTGGCACCT-TTCAATC
2681275 CCCACACAAGTTGGTGGCACCTTTCAATC
1 CCCACACAAGTTGGTGGCACCTTTCAATC
2681304 CCCA
1 CCCA
2681308 AAGAGCAGGA
Statistics
Matches: 41, Mismatches: 11, Indels: 14
0.62 0.17 0.21
Matches are distributed among these distances:
26 11 0.27
27 7 0.17
28 7 0.17
29 16 0.39
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.19
Consensus pattern (29 bp):
CCCACACAAGTTGGTGGCACCTTTCAATC
Found at i:2681333 original size:26 final size:26
Alignment explanation
Indices: 2681249--2681333 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
2681239 CCTTTCAGTC
2681249 CCCAAAGAGCAGGACACCTCTTAAAG
1 CCCAAAGAGCAGGACACCTCTTAAAG
** * **
2681275 CCCACACA-AGTTGGTGGCACCT-TTCAATC
1 CCCA-A-AGAG-CAG-GACACCTCTT-AAAG
2681304 CCCAAAGAGCAGGACACCTCTTAAAG
1 CCCAAAGAGCAGGACACCTCTTAAAG
2681330 CCCA
1 CCCA
2681334 CACAAGTTGG
Statistics
Matches: 42, Mismatches: 10, Indels: 14
0.64 0.15 0.21
Matches are distributed among these distances:
26 16 0.38
27 7 0.17
28 7 0.17
29 12 0.29
ACGTcount: A:0.33, C:0.34, G:0.18, T:0.15
Consensus pattern (26 bp):
CCCAAAGAGCAGGACACCTCTTAAAG
Found at i:2681407 original size:57 final size:57
Alignment explanation
Indices: 2681135--2681659 Score: 684
Period size: 55 Copynumber: 9.3 Consensus size: 57
2681125 TCCGCTTTTT
2681135 AGTCCTCAAAGAGCAGGACACC--TCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
2681190 AGTCCTCAAAGAGCAGGACACC--TCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
2681245 AGTCCCCAAAGAGCAGGACACC--TCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
2681300 AATCCCCAAAGAGCAGGACACC--TCTTAAAGCCCACACAAGTTGGTGGCACC-TTC
1 AGTCCTCAAAGAGCAGGACACCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
2681354 AGTCCTCAAAGAGCGGGACGCCTTTTCTTAAAGCCCACACAAGTTGGTGGCACC-TTC
1 AGTCCTCAAAGAGCAGGACACC-TTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* * *
2681411 AGTCCTCAAAAAG-AGGGACACATTTTCTTTTAAAGCCCACACAAGTTGATGGCACC-TTC
1 AGTCCTCAAAGAGCA-GGACAC-CTTTC--TTAAAGCCCACACAAGTTGGTGGCACCTTTC
** * *
2681470 AGTCCTCAAAGAGTGGGACGTCTTTTCTTAAAGCCCACACAAGTTGGTGGCACC-TTC
1 AGTCCTCAAAGAGCAGGAC-ACCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
2681527 AGTCCTCAAAGAGCGGGACACATTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACAC-CTTTC--TTAAAGCCCACACAAGTTGGTGGCACCTTTC
* * * *
2681587 AGTCCTCAAAGAGCAGGACGCCTTTC--AAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACACCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
2681642 ACTCCTCAATGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
2681660 TACACTTTAT
Statistics
Matches: 432, Mismatches: 25, Indels: 26
0.89 0.05 0.05
Matches are distributed among these distances:
54 21 0.05
55 201 0.47
56 1 0.00
57 105 0.24
59 81 0.19
60 23 0.05
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (57 bp):
AGTCCTCAAAGAGCAGGACACCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
Found at i:2681471 original size:116 final size:112
Alignment explanation
Indices: 2681135--2681659 Score: 685
Period size: 116 Copynumber: 4.7 Consensus size: 112
2681125 TCCGCTTTTT
*
2681135 AGTCCTCAAAGAGCAGGACACC--TCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCA
1 AGTCCTCAAAGAGCAGGACGCCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCA
2681198 AAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
66 AAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* * * *
2681245 AGTCCCCAAAGAGCAGGACACC--TCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCCCA
1 AGTCCTCAAAGAGCAGGACGCCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCA
2681308 AAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACC-TTC
66 AAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
2681354 AGTCCTCAAAGAGCGGGACGCCTTTTCTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTC
1 AGTCCTCAAAGAGCAGGACGCC-TTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
* * *
2681418 AAAAAG-AGGGACACATTTTCTTTTAAAGCCCACACAAGTTGATGGCACC-TTC
65 AAAGAGCA-GGACAC-----CTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
** *
2681470 AGTCCTCAAAGAGTGGGACGTCTTTTCTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTC
1 AGTCCTCAAAGAGCAGGACG-CCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTC
* *
2681534 AAAGAGCGGGACACATTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTC
65 AAAGAGCAGGACAC-----CTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
* * * *
2681587 AGTCCTCAAAGAGCAGGACGCCTTTC--AAAGCCCACACGAGTTGGTGGCACTTTTTACTCCTCA
1 AGTCCTCAAAGAGCAGGACGCCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCA
*
2681650 ATGAGCAGGA
66 AAGAGCAGGA
2681660 TACACTTTAT
Statistics
Matches: 377, Mismatches: 25, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
109 22 0.06
110 104 0.28
111 19 0.05
112 29 0.08
114 23 0.06
115 17 0.05
116 141 0.37
117 22 0.06
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (112 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCA
AAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
Found at i:2682377 original size:21 final size:21
Alignment explanation
Indices: 2682353--2682409 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
2682343 AATTTATCCA
2682353 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
2682374 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
2682395 AATGTATCGATACAT
1 AATGTATCGATACAT
2682410 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:2682489 original size:19 final size:19
Alignment explanation
Indices: 2682465--2682530 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
2682455 AATTCAACAA
2682465 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
2682484 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
2682499 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
2682516 ATTGTATCGATACAT
1 TTTGTATCGATACAT
2682531 GATTAGCTAC
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.27
15 2 0.05
17 2 0.05
19 26 0.63
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.39
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:2682504 original size:13 final size:13
Alignment explanation
Indices: 2682486--2682510 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2682476 ACATAAGTTT
2682486 TGTATCGATACAA
1 TGTATCGATACAA
2682499 TGTATCGATACA
1 TGTATCGATACA
2682511 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2682504 original size:32 final size:32
Alignment explanation
Indices: 2682467--2682529 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
2682457 TTCAACAATT
*
2682467 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
2682499 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
2682530 TGATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:2682590 original size:13 final size:13
Alignment explanation
Indices: 2682572--2682597 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2682562 CATTTTTCTG
2682572 TGTATCGATACAT
1 TGTATCGATACAT
2682585 TGTATCGATACAT
1 TGTATCGATACAT
2682598 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2682594 original size:33 final size:33
Alignment explanation
Indices: 2682552--2682618 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2682542 GCCAAGGAAA
***
2682552 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
2682585 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
2682618 T
1 T
2682619 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:2685138 original size:28 final size:27
Alignment explanation
Indices: 2685071--2685139 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 27
2685061 CTTCACAATC
*
2685071 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCATA
*
2685098 GGGGATACTCCAACCCCGTTATTTCCA-A
1 GGGGATACTCCAACCCCGTTA-AT-CATA
2685126 GGGGATACTCCAAC
1 GGGGATACTCCAAC
2685140 TCCGGTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 21 0.55
28 15 0.39
29 2 0.05
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCATA
Found at i:2685179 original size:107 final size:104
Alignment explanation
Indices: 2685017--2685409 Score: 314
Period size: 107 Copynumber: 3.7 Consensus size: 104
2685007 TTCTATAATC
*
2685017 GGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACTCCGATTTTA-TTCC-AAAAACACCAATTT-TTCACAATCGGGGATACTCC
2685082 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCAA
63 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTA-TTCC-A
* * *
2685126 GGGGATACTCCAACTCCGGTTTTA-TCGCTAAAACACTAATTTTTTCACAATCGGGGATACTCCA
1 GGGGATACTCCAACTCCGATTTTATTC-CAAAAACACCAA-TTTTTCACAATCGGGGATACTCCA
** * ** * * * ** * *
2685190 ATCCTGGTTTTATTTTC---AAAACGCCAATTTTCCTTTAAT-C-
64 A-CCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATTCCA
* * *
2685230 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAAATTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACTCCGATTTTA-TTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
* *
2685295 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
65 CCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTA-TTCC-A
** * * *** * * *
2685338 GGGGATACTCCAAC-CTCGGCTTTATTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACTC-CGATTTTATTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
2685402 CCCCGTTA
65 CCCCGTTA
2685410 TTTTCGAAGG
Statistics
Matches: 221, Mismatches: 46, Indels: 36
0.73 0.15 0.12
Matches are distributed among these distances:
102 2 0.01
103 7 0.03
104 51 0.23
105 10 0.05
106 18 0.08
107 73 0.33
108 32 0.14
109 28 0.13
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (104 bp):
GGGGATACTCCAACTCCGATTTTATTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTCCA
Found at i:2685211 original size:52 final size:53
Alignment explanation
Indices: 2685126--2685295 Score: 174
Period size: 52 Copynumber: 3.3 Consensus size: 53
2685116 TTATTTCCAA
* *
2685126 GGGGATACTCCAACTCCGGTTTTA--TCGCTAAAACACTAATTTTTTCACAATC
1 GGGGATACTCCAACTCCGGTTTTATTTC-CAAAAACACCAATTTTTTCACAATC
* * *
2685178 GGGGATACTCCAA-TCCTGGTTTTATTTTC-AAAACGCCAATTTTCCTT--TAATC
1 GGGGATACTCCAACTCC-GGTTTTATTTCCAAAAACACCAATTTT--TTCACAATC
* * *
2685230 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAA-ATTTTCACAATC
1 GGGGATACTCCAACTCCGGTTTTATTTCCAAAAACACCAATTTTTTCACAATC
*
2685282 GAGGATACTCCAAC
1 GGGGATACTCCAAC
2685296 CTCGTTATTT
Statistics
Matches: 98, Mismatches: 11, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
50 2 0.02
51 3 0.03
52 78 0.80
53 12 0.12
54 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (53 bp):
GGGGATACTCCAACTCCGGTTTTATTTCCAAAAACACCAATTTTTTCACAATC
Found at i:2685315 original size:28 final size:28
Alignment explanation
Indices: 2685279--2685355 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
2685269 AATTTTCACA
* *
2685279 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCTCGTTACTTC
*
2685307 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCTCGTTACTTC
***
2685335 CGAGGGGATACTCCAACCTCG
1 ATCGGGGATACTCCAACCTCG
2685356 GCTTTATTCC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCTCGTTACTTC
Found at i:2685458 original size:79 final size:79
Alignment explanation
Indices: 2685309--2685510 Score: 221
Period size: 79 Copynumber: 2.6 Consensus size: 79
2685299 GTTATTTCAT
* * * *
2685309 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCTCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCTCGACTTTATTCCCAAAATAT
* * *
2685374 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * ** *
2685388 TGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAATCC-CGATTTTTTTTTC-TAATC
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAA-CCTCGACTTTATTCCCAAAAT-
2685451 ATCGATTTCTCACAAC
64 ATCGATTTCTCACAAC
* *
2685467 CGGGGATACTCCAGCCCCGTTATTTTC-AAGGGAACACTCCAACC
1 CGGGGATACTCCAACCCCGTTATTTTCGAAGGG-ATACTCCAACC
2685511 CTGTTATTAT
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
78 10 0.10
79 92 0.88
80 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCTCGACTTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:2688736 original size:59 final size:60
Alignment explanation
Indices: 2688546--2689231 Score: 621
Period size: 61 Copynumber: 11.4 Consensus size: 60
2688536 GGAGAGAGGC
* * **
2688546 GTCCTGCTCTTTGAAGACTAG-AAGGTGCCACCAGCTTGTGTGGGCTTTGAAAAAAAAGAAGT
1 GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTG--AAAGGA-AAGT
* * * * * * *
2688608 ATCCTACT-TTTCAAGGACTA-AAAGGTGCCACCAAATT-TTTGGGCTTTGAAAAGAAAAT
1 GTCCTGCTCTTT-GAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGT
* * *
2688666 GTCCTGTTCTTTGGGGACTAGAAA-GTGCTACCAACTTGTGTGGGCTTTGAAAGGAAAGT
1 GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGT
* * *
2688725 GTCTTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTATTTGGGCTTTGAAAGGAAAGT
1 GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGT
* * * * *
2688784 TTCCTACTCCTTGAGGA-T-GGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGGAAGT
1 GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGT
* * * * *
2688842 GTCCTGCTTTTTGAGGAGTAG-AAGGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGAC
1 GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAAG-T
* * * * *
2688903 GTCTTGCTCTTTAAGGACT-GAAATGTGCCACCAACTTGTATGGGCTTTGAAAGAAGAAGGT
1 GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAG--GAAAGT
* * * * *
2688964 GTCCTACTCTTTGAGGAC--GTAAAGGTGACACCAACTTGTATGGGCTTTAAAAGGAAAAGGC
1 GTCCTGCTCTTTGAGGACTAG-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAA-GT
* * * * **
2689025 GTCCTGCTTTTTAAGGACT-GAAAGGTGCCACTAATTTGTGTGGGCTTTGAAAGGAGAAAAC
1 GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-G-GAAAGT
* * * * *
2689086 ATCTTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAAGGAAAAT
1 GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAGGAAAGT
* * * * *
2689146 GTCATACTCTTTGAGGACTA-AAAGGTGCCACCAACCTGTGTGGGCTTTAAAAGGAAAATGC
1 GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAA-GT
* *
2689207 GTCTTGCTCTTTGAAGACT-GAAAGG
1 GTCCTGCTCTTTGAGGACTAGAAAGG
2689232 ATAAAAGGTT
Statistics
Matches: 512, Mismatches: 87, Indels: 51
0.79 0.13 0.08
Matches are distributed among these distances:
58 77 0.15
59 130 0.25
60 58 0.11
61 208 0.41
62 37 0.07
63 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (60 bp):
GTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGT
Found at i:2690183 original size:20 final size:19
Alignment explanation
Indices: 2690155--2690206 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
2690145 CTTAAGCAAG
*
2690155 TTCTTTTTTCT-TTTTTCT
1 TTCTTTTTTTTGTTTTTCT
*
2690173 TTCTATTTTTTTGTTTTTTT
1 TTCT-TTTTTTTGTTTTTCT
2690193 TTCTTTTTTTTGTT
1 TTCTTTTTTTTGTT
2690207 GATTTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 4 0.13
19 16 0.53
20 10 0.33
ACGTcount: A:0.02, C:0.10, G:0.04, T:0.85
Consensus pattern (19 bp):
TTCTTTTTTTTGTTTTTCT
Found at i:2690197 original size:24 final size:22
Alignment explanation
Indices: 2690165--2690216 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
2690155 TTCTTTTTTC
* *
2690165 TTTTTTCTTTCTATTTTTTTGTTT
1 TTTTTTCTTT-T-TTTTGTTGATT
2690189 TTTTTTCTTTTTTTTGTTGATT
1 TTTTTTCTTTTTTTTGTTGATT
2690211 TTTTTT
1 TTTTTT
2690217 AAAAGAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 15 0.58
23 1 0.04
24 10 0.38
ACGTcount: A:0.04, C:0.06, G:0.06, T:0.85
Consensus pattern (22 bp):
TTTTTTCTTTTTTTTGTTGATT
Found at i:2690212 original size:19 final size:20
Alignment explanation
Indices: 2690172--2690213 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
2690162 TTCTTTTTTC
**
2690172 TTTCTATTTTTTTGTTTTTT
1 TTTCTATTTTTTTGTTGATT
2690192 TTTCT-TTTTTTTGTTGATT
1 TTTCTATTTTTTTGTTGATT
2690211 TTT
1 TTT
2690214 TTTAAAAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.05, C:0.05, G:0.07, T:0.83
Consensus pattern (20 bp):
TTTCTATTTTTTTGTTGATT
Found at i:2690212 original size:20 final size:20
Alignment explanation
Indices: 2690158--2690214 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 20
2690148 AAGCAAGTTC
* *
2690158 TTTTTTCTTTTTTCTTTCTAT
1 TTTTTTGTTATTT-TTTCTAT
*
2690179 TTTTTTGTTTTTTTTTCT-T
1 TTTTTTGTTATTTTTTCTAT
2690198 TTTTTTGTTGATTTTTT
1 TTTTTTGTT-ATTTTTT
2690215 TTAAAAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 10 0.30
20 11 0.33
21 12 0.36
ACGTcount: A:0.04, C:0.07, G:0.05, T:0.84
Consensus pattern (20 bp):
TTTTTTGTTATTTTTTCTAT
Found at i:2692780 original size:19 final size:19
Alignment explanation
Indices: 2692756--2692821 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
2692746 TGTCAACGAT
2692756 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
2692775 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
2692789 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
*
2692807 TTGTATTGATACATA
1 TTGTATCGATACATA
2692822 TGAAGCAACT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
15 2 0.05
17 2 0.05
19 25 0.62
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:2692793 original size:32 final size:32
Alignment explanation
Indices: 2692757--2692819 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
2692747 GTCAACGATT
2692757 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
2692789 TGTATCGATACATAAGTGTTGTATTGATACA
1 TGTATCGATACATAAGTGTTGTATCGATACA
2692820 TATGAAGCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:2692794 original size:13 final size:13
Alignment explanation
Indices: 2692776--2692800 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2692766 ACATAAGTGT
2692776 TGTATCGATACAA
1 TGTATCGATACAA
2692789 TGTATCGATACA
1 TGTATCGATACA
2692801 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2693863 original size:20 final size:20
Alignment explanation
Indices: 2693826--2693864 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2693816 ACAACCTTGA
*
2693826 TCATGCATTTTTACCATGTT
1 TCATGCATTTATACCATGTT
*
2693846 TCATGCATTTATAGCATGT
1 TCATGCATTTATACCATGT
2693865 CCAGCACCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (20 bp):
TCATGCATTTATACCATGTT
Found at i:2700357 original size:20 final size:20
Alignment explanation
Indices: 2700332--2700387 Score: 112
Period size: 20 Copynumber: 2.8 Consensus size: 20
2700322 GCTGCCAAGG
2700332 AAATGTATCGATACATAAGT
1 AAATGTATCGATACATAAGT
2700352 AAATGTATCGATACATAAGT
1 AAATGTATCGATACATAAGT
2700372 AAATGTATCGATACAT
1 AAATGTATCGATACAT
2700388 TCAGGCATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.45, C:0.11, G:0.14, T:0.30
Consensus pattern (20 bp):
AAATGTATCGATACATAAGT
Found at i:2702924 original size:20 final size:20
Alignment explanation
Indices: 2702899--2702955 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
2702889 TTTTACCCAG
2702899 ATGTATTGATACATTTTTCA
1 ATGTATTGATACATTTTTCA
* * * * *
2702919 ATGTATCGATGCATGTATGA
1 ATGTATTGATACATTTTTCA
*
2702939 ATGTATTAATACATTTT
1 ATGTATTGATACATTTT
2702956 GTCTTTTTAC
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.46
Consensus pattern (20 bp):
ATGTATTGATACATTTTTCA
Found at i:2705668 original size:25 final size:25
Alignment explanation
Indices: 2705640--2705688 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
2705630 GGGATCATAT
*
2705640 TGAAA-TAATATCGAGTCGAAACTAA
1 TGAAACTAATATCAAGTC-AAACTAA
*
2705665 TGAAACTAATGTCAAGTCAAACTA
1 TGAAACTAATATCAAGTCAAACTA
2705689 TAGCTAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.24
Consensus pattern (25 bp):
TGAAACTAATATCAAGTCAAACTAA
Found at i:2710329 original size:18 final size:18
Alignment explanation
Indices: 2710306--2710341 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
2710296 TTTCCATTAT
2710306 TTAATACAAAATATTTAC
1 TTAATACAAAATATTTAC
2710324 TTAATACAAAATATTTAC
1 TTAATACAAAATATTTAC
2710342 ATCCAAATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (18 bp):
TTAATACAAAATATTTAC
Found at i:2712625 original size:13 final size:13
Alignment explanation
Indices: 2712607--2712632 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2712597 ACACACAATA
2712607 TGTATCGATACAT
1 TGTATCGATACAT
2712620 TGTATCGATACAT
1 TGTATCGATACAT
2712633 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2712630 original size:32 final size:33
Alignment explanation
Indices: 2712587--2712654 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
2712577 ATAGCCAAAT
* * *
2712587 TTGTATTGATACA-CACAATATGTATCGATACA
1 TTGTATCGATACATCACAAAATGTATCGACACA
*
2712619 TTGTATCGATACATCCCAAAATGTATCGACACA
1 TTGTATCGATACATCACAAAATGTATCGACACA
2712652 TTG
1 TTG
2712655 GCTTGTAACG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 12 0.39
33 19 0.61
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACATCACAAAATGTATCGACACA
Found at i:2719786 original size:13 final size:13
Alignment explanation
Indices: 2719768--2719792 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2719758 AGATTGCACA
2719768 GTATCGATACATT
1 GTATCGATACATT
2719781 GTATCGATACAT
1 GTATCGATACAT
2719793 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2719805 original size:20 final size:21
Alignment explanation
Indices: 2719780--2719832 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
2719770 ATCGATACAT
**
2719780 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
2719800 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
2719821 TGTATCGATACA
1 TGTATCGATACA
2719833 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:2719892 original size:13 final size:13
Alignment explanation
Indices: 2719874--2719899 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2719864 ACACACAATA
2719874 TGTATCGATACAT
1 TGTATCGATACAT
2719887 TGTATCGATACAT
1 TGTATCGATACAT
2719900 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2719915 original size:33 final size:32
Alignment explanation
Indices: 2719854--2719921 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
2719844 GTAGCCAAAT
*
2719854 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
2719886 TTGTATCGATACATCCCAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
2719919 TTG
1 TTG
2719922 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:2721165 original size:62 final size:62
Alignment explanation
Indices: 2721068--2721198 Score: 237
Period size: 62 Copynumber: 2.1 Consensus size: 62
2721058 GGGAACCTTC
2721068 GACTCATCAATTGCTGTTACTTTGGCTTCCCAAGACTTAGGAAGGCTATTGAGGAGCTTCTT
1 GACTCATCAATTGCTGTTACTTTGGCTTCCCAAGACTTAGGAAGGCTATTGAGGAGCTTCTT
* *
2721130 GACTCATCAATTGTTGTTACTTTGGCTTCCCAAGACTTAGGAAGGTTATTGAGGAGCTTCTT
1 GACTCATCAATTGCTGTTACTTTGGCTTCCCAAGACTTAGGAAGGCTATTGAGGAGCTTCTT
2721192 GAC-CATC
1 GACTCATC
2721199 TCTTTATTTG
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
61 4 0.06
62 63 0.94
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (62 bp):
GACTCATCAATTGCTGTTACTTTGGCTTCCCAAGACTTAGGAAGGCTATTGAGGAGCTTCTT
Found at i:2722603 original size:20 final size:21
Alignment explanation
Indices: 2722578--2722629 Score: 72
Period size: 20 Copynumber: 2.5 Consensus size: 21
2722568 GTTGGGCTCA
2722578 ATGTATCGATACAAATAC-A-T
1 ATGTATCGATAC-AATACAAGT
*
2722598 ATGTATCGATACAATTCAAGT
1 ATGTATCGATACAATACAAGT
2722619 ATGTATCGATA
1 ATGTATCGATA
2722630 TAATGTATCG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 4 0.14
20 13 0.45
21 12 0.41
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACAATACAAGT
Found at i:2723476 original size:20 final size:21
Alignment explanation
Indices: 2723394--2723476 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 21
2723384 CAATTTAATA
*
2723394 CTCCCCATTAAT-AGAATTTTT
1 CTCCCCCTTAATCA-AATTTTT
* *
2723415 CTCCCCCATAATGAAATATTTAAT
1 CTCCCCCTTAATCAAAT-TTT--T
*
2723439 ACTCACCCTTAATC-AATTTTT
1 -CTCCCCCTTAATCAAATTTTT
2723460 CTCCCCCTTAA-CAAATT
1 CTCCCCCTTAATCAAATT
2723477 ATCCCTTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
19 1 0.02
20 14 0.28
21 14 0.28
22 4 0.08
23 3 0.06
24 4 0.08
25 10 0.20
ACGTcount: A:0.31, C:0.29, G:0.02, T:0.37
Consensus pattern (21 bp):
CTCCCCCTTAATCAAATTTTT
Found at i:2725787 original size:16 final size:17
Alignment explanation
Indices: 2725754--2725788 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
2725744 GTAGCTAAAC
2725754 TTGTATCGATACACATTG
1 TTGTATCGATA-ACATTG
2725772 TTGTATCGAT-ACATTG
1 TTGTATCGATAACATTG
2725788 T
1 T
2725789 ATTGATACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
18 10 0.59
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (17 bp):
TTGTATCGATAACATTG
Found at i:2725884 original size:20 final size:20
Alignment explanation
Indices: 2725859--2725916 Score: 107
Period size: 20 Copynumber: 2.9 Consensus size: 20
2725849 TTCAAATACA
2725859 TGTATCGATACATCACAAAT
1 TGTATCGATACATCACAAAT
2725879 TGTATCGATACATCACAAAT
1 TGTATCGATACATCACAAAT
2725899 TGTATCGATACATTCACA
1 TGTATCGATACA-TCACA
2725917 CGGGAAATCA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 32 0.86
21 5 0.14
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATCACAAAT
Found at i:2731781 original size:8 final size:8
Alignment explanation
Indices: 2731768--2731799 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
2731758 ATTTGATTAA
2731768 ATTTTGTG
1 ATTTTGTG
2731776 ATTTTGTG
1 ATTTTGTG
2731784 ATTTTGTG
1 ATTTTGTG
2731792 ATTTTGTG
1 ATTTTGTG
2731800 TTGAATGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.12, C:0.00, G:0.25, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:2732021 original size:13 final size:13
Alignment explanation
Indices: 2732003--2732041 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
2731993 ACATCATTCT
2732003 TTGTATCGATACA
1 TTGTATCGATACA
2732016 TTGTATCGATACA
1 TTGTATCGATACA
*
2732029 CTGTATCGATACA
1 TTGTATCGATACA
2732042 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2733870 original size:43 final size:43
Alignment explanation
Indices: 2733822--2733908 Score: 165
Period size: 43 Copynumber: 2.0 Consensus size: 43
2733812 TATATGTGCA
2733822 AATAAATTTTTGATTAAGGGGGAGAAAAAGATAAGTGCTTATG
1 AATAAATTTTTGATTAAGGGGGAGAAAAAGATAAGTGCTTATG
*
2733865 AATAAATTTTTGATTAAGGGGGAGAAAGAGATAAGTGCTTATG
1 AATAAATTTTTGATTAAGGGGGAGAAAAAGATAAGTGCTTATG
2733908 A
1 A
2733909 TTAAGGGGGA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.41, C:0.02, G:0.26, T:0.30
Consensus pattern (43 bp):
AATAAATTTTTGATTAAGGGGGAGAAAAAGATAAGTGCTTATG
Found at i:2734638 original size:33 final size:32
Alignment explanation
Indices: 2734577--2734644 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
2734567 GTAGCTAAAC
* **
2734577 TTGTATCGATACACATAGTATGTATCGATACA
1 TTGTACCGATACACATAAAATGTATCGATACA
2734609 TTGTACCGATACACCATAAAATGTATCGATACA
1 TTGTACCGATACA-CATAAAATGTATCGATACA
2734642 TTG
1 TTG
2734645 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 12 0.38
33 20 0.62
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (32 bp):
TTGTACCGATACACATAAAATGTATCGATACA
Found at i:2737570 original size:20 final size:20
Alignment explanation
Indices: 2737545--2737597 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
2737535 ATAATCCAAA
2737545 GTATCGATACATAGGTATTT
1 GTATCGATACATAGGTATTT
2737565 GTATCGATACATAGGTATTT
1 GTATCGATACATAGGTATTT
2737585 GTATCGATACATA
1 GTATCGATACATA
2737598 AAGGTTGACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (20 bp):
GTATCGATACATAGGTATTT
Found at i:2737699 original size:19 final size:20
Alignment explanation
Indices: 2737662--2737705 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
2737652 AAACGTATCG
*
2737662 ATACATATTGCTTAGTATTA
1 ATACATATTGCTTAATATTA
* *
2737682 ATACATGTT-CTTAATATTG
1 ATACATATTGCTTAATATTA
2737701 ATACA
1 ATACA
2737706 CACTAAATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.43
Consensus pattern (20 bp):
ATACATATTGCTTAATATTA
Found at i:2743202 original size:17 final size:18
Alignment explanation
Indices: 2743182--2743232 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
2743172 ATATTACTAA
*
2743182 TTTTGTTATT-TAAAATT
1 TTTTATTATTATAAAATT
2743199 TTTTATTATTAATAAAATT
1 TTTTATTATT-ATAAAATT
*
2743218 TATTA-TATTCATAAA
1 TTTTATTATT-ATAAA
2743233 TAAGAATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
17 9 0.31
18 9 0.31
19 11 0.38
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (18 bp):
TTTTATTATTATAAAATT
Found at i:2743231 original size:18 final size:19
Alignment explanation
Indices: 2743192--2743232 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
2743182 TTTTGTTATT
*
2743192 TAAAATTTTTTATTATTAA
1 TAAAATTTATTATTATTAA
*
2743211 TAAAATTTATTA-TATTCA
1 TAAAATTTATTATTATTAA
2743229 TAAA
1 TAAA
2743233 TAAGAATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
TAAAATTTATTATTATTAA
Found at i:2743291 original size:75 final size:75
Alignment explanation
Indices: 2743194--2743430 Score: 341
Period size: 75 Copynumber: 3.2 Consensus size: 75
2743184 TTGTTATTTA
** * * * * *
2743194 AAATTTTTTATTATTAATAAAATTTATTATATTCATAAATAAGAATTTTAAATTTATTGAAAGAT
1 AAATTTTTT-TTAACAATAAAATTTATCATATTTATAAATAATAATTTTAATTTTATTGAAAGAC
2743259 TTTGGTTAAAT
65 TTTGGTTAAAT
**
2743270 GGATTTTTTTTAACAATAAAATTTATCATATTTATAAATAATAATTTTAATTTTATTGAAAGACT
1 AAATTTTTTTTAACAATAAAATTTATCATATTTATAAATAATAATTTTAATTTTATTGAAAGACT
2743335 TTGGTTAAAT
66 TTGGTTAAAT
* **
2743345 AAATTTTTTTTAACAATAAAATTTATCATATTTATAAATAATAATTATAATTTTATTGAATTACT
1 AAATTTTTTTTAACAATAAAATTTATCATATTTATAAATAATAATTTTAATTTTATTGAAAGACT
2743410 TTGGTTAAAT
66 TTGGTTAAAT
*
2743420 -AATTTATTTTA
1 AAATTTTTTTTA
2743431 TAATAAATAA
Statistics
Matches: 146, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
74 10 0.07
75 129 0.88
76 7 0.05
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.49
Consensus pattern (75 bp):
AAATTTTTTTTAACAATAAAATTTATCATATTTATAAATAATAATTTTAATTTTATTGAAAGACT
TTGGTTAAAT
Found at i:2743392 original size:22 final size:21
Alignment explanation
Indices: 2743359--2743400 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
2743349 TTTTTTTAAC
*
2743359 AATAAAATTTATCATATTTATA
1 AATAAAATTTATAAT-TTTATA
2743381 AATAATAA-TTATAATTTTAT
1 AATAA-AATTTATAATTTTAT
2743401 TGAATTACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 5 0.28
22 11 0.61
23 2 0.11
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
AATAAAATTTATAATTTTATA
Found at i:2744970 original size:38 final size:38
Alignment explanation
Indices: 2744910--2745007 Score: 110
Period size: 38 Copynumber: 2.6 Consensus size: 38
2744900 CGGTAGAACA
*
2744910 AAACAAAAACTACTATTCTAAACT-GATGGCATGGTTGG
1 AAACAAAAACTACTATTCTAAACTAG-TGGCATGGTTAG
* *
2744948 AAACAAAAA-TCATTATTTTAAACTAGTGGCATGGTTAG
1 AAACAAAAACT-ACTATTCTAAACTAGTGGCATGGTTAG
* * *
2744986 AAACAAAATCGACAATTCTAAA
1 AAACAAAAACTACTATTCTAAA
2745008 TCGGTGGCAA
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
37 1 0.02
38 47 0.96
39 1 0.02
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.27
Consensus pattern (38 bp):
AAACAAAAACTACTATTCTAAACTAGTGGCATGGTTAG
Found at i:2746297 original size:21 final size:20
Alignment explanation
Indices: 2746272--2746324 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
2746262 TACAAGCCAA
**
2746272 TGTATCGATACAATTTTTTTG
1 TGTATCGATACAA-TACTTTG
2746293 TGTATCGATAC-ATACTTTG
1 TGTATCGATACAATACTTTG
2746312 TGTATCGATACAA
1 TGTATCGATACAA
2746325 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 16 0.55
20 2 0.07
21 11 0.38
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:2748411 original size:21 final size:20
Alignment explanation
Indices: 2748382--2748424 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
2748372 GGCTAGTATG
*
2748382 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCGACCT
*
2748403 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
2748423 GG
1 GG
2748425 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.30, G:0.44, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:2748883 original size:13 final size:13
Alignment explanation
Indices: 2748865--2748902 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
2748855 ATAATCCCCC
2748865 TGTATCGATACAG
1 TGTATCGATACAG
*
2748878 TGTATCGATACAT
1 TGTATCGATACAG
2748891 TGTATCGATACA
1 TGTATCGATACA
2748903 AAGAAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:2751001 original size:15 final size:15
Alignment explanation
Indices: 2750981--2751011 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2750971 ATTTCGTTTG
*
2750981 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
2750996 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
2751011 G
1 G
2751012 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:2752843 original size:21 final size:21
Alignment explanation
Indices: 2752814--2752858 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
2752804 AAGTTTTTAT
*
2752814 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
2752834 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
2752856 TTT
1 TTT
2752859 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:2755080 original size:21 final size:20
Alignment explanation
Indices: 2755055--2755107 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 20
2755045 TACAAGCCAA
**
2755055 TGTATCGATACAATTTTTTTG
1 TGTATCGATACAA-TACTTTG
2755076 TGTATCGATAC-ATACTTTG
1 TGTATCGATACAATACTTTG
2755095 TGTATCGATACAA
1 TGTATCGATACAA
2755108 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 16 0.55
20 2 0.07
21 11 0.38
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.43
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:2755911 original size:22 final size:21
Alignment explanation
Indices: 2755868--2755912 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
2755858 AGAATCAATT
* *
2755868 ATTAAAAATAACTTTTAAAAA
1 ATTAAAAATAAATTTCAAAAA
*
2755889 ATTAAAAATAAAATTTCATAAA
1 ATTAAAAAT-AAATTTCAAAAA
2755911 AT
1 AT
2755913 GCTGAAATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (21 bp):
ATTAAAAATAAATTTCAAAAA
Found at i:2757271 original size:2 final size:2
Alignment explanation
Indices: 2757264--2757290 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
2757254 TAAAAATAAG
2757264 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
2757291 TATCCATCCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2757553 original size:3 final size:3
Alignment explanation
Indices: 2757545--2757570 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
2757535 AACATCTCAA
2757545 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
2757571 CAACAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:2758240 original size:15 final size:15
Alignment explanation
Indices: 2758197--2758245 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
2758187 AAATAATAAG
*
2758197 ATTTAATTTAAAAGT
1 ATTTAATTTAAAAAT
2758212 AATTTACTATTTAAAAAT
1 -ATTTA--ATTTAAAAAT
2758230 ATTTAATTTAAAAAT
1 ATTTAATTTAAAAAT
2758245 A
1 A
2758246 AATTCAGACA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
15 11 0.37
16 5 0.17
17 5 0.17
18 9 0.30
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (15 bp):
ATTTAATTTAAAAAT
Found at i:2759245 original size:20 final size:23
Alignment explanation
Indices: 2759205--2759248 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
2759195 AAAGGAAAAA
2759205 ACGGAAGAAAAATAAAGAAAACC
1 ACGGAAGAAAAATAAAGAAAACC
* * *
2759228 ACGGAAAAAAAAAAAAAAAAA
1 ACGGAAGAAAAATAAAGAAAA
2759249 ACTTAACGTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.75, C:0.09, G:0.14, T:0.02
Consensus pattern (23 bp):
ACGGAAGAAAAATAAAGAAAACC
Found at i:2765761 original size:19 final size:19
Alignment explanation
Indices: 2765716--2765753 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
2765706 ACCACCAAAC
2765716 AGACCCCAGGAAATAAAAT
1 AGACCCCAGGAAATAAAAT
2765735 AGACCCCAGGAAATAAAAT
1 AGACCCCAGGAAATAAAAT
2765754 CAACCCCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.16, T:0.11
Consensus pattern (19 bp):
AGACCCCAGGAAATAAAAT
Found at i:2766152 original size:19 final size:20
Alignment explanation
Indices: 2766130--2766173 Score: 72
Period size: 19 Copynumber: 2.2 Consensus size: 20
2766120 AAGTTAAAAT
2766130 ATATTTTTATTA-AAATTAA
1 ATATTTTTATTATAAATTAA
*
2766149 ATATTTTTATTATAATTTAA
1 ATATTTTTATTATAAATTAA
2766169 ATATT
1 ATATT
2766174 AAAAATTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATATTTTTATTATAAATTAA
Found at i:2766254 original size:15 final size:15
Alignment explanation
Indices: 2766236--2766280 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
2766226 AAGATTAAAT
2766236 TTTTAAAAAAATATA
1 TTTTAAAAAAATATA
* *
2766251 TTTTTAAAAAATAAA
1 TTTTAAAAAAATATA
*
2766266 TTATAAAAAAATATA
1 TTTTAAAAAAATATA
2766281 ATATATAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TTTTAAAAAAATATA
Found at i:2766285 original size:15 final size:15
Alignment explanation
Indices: 2766239--2766285 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
2766229 ATTAAATTTT
* *
2766239 TAAAAAAATATATTT
1 TAAAAAAATATAATA
*
2766254 TTAAAAAATA-AATTA
1 TAAAAAAATATAA-TA
2766269 TAAAAAAATATAATA
1 TAAAAAAATATAATA
2766284 TA
1 TA
2766286 TAAATTTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 1 0.04
15 23 0.88
16 2 0.08
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
TAAAAAAATATAATA
Found at i:2766331 original size:10 final size:10
Alignment explanation
Indices: 2766316--2766340 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
2766306 TTATTTATTT
2766316 ATAAATATAA
1 ATAAATATAA
2766326 ATAAATATAA
1 ATAAATATAA
2766336 ATAAA
1 ATAAA
2766341 ATTTAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
ATAAATATAA
Found at i:2766389 original size:15 final size:16
Alignment explanation
Indices: 2766350--2766390 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
2766340 AATTTAAAAT
2766350 TTAATTTTAAATTAAA
1 TTAATTTTAAATTAAA
*
2766366 TTAAATTTAAA-TAAA
1 TTAATTTTAAATTAAA
2766381 -TATATTTTAA
1 TTA-ATTTTAA
2766391 TGTTGTACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 2 0.09
15 10 0.45
16 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
TTAATTTTAAATTAAA
Found at i:2766492 original size:2 final size:2
Alignment explanation
Indices: 2766485--2766516 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
2766475 ATCACTCCTC
2766485 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
2766517 GGCAATGGGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:2768020 original size:16 final size:16
Alignment explanation
Indices: 2767996--2768029 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
2767986 TCAAAAAATT
2767996 AAAAATTTAAA-TTAA
1 AAAAATTTAAACTTAA
2768011 AAAAACTTTAAACTTAA
1 AAAAA-TTTAAACTTAA
2768028 AA
1 AA
2768030 TGACCTGAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 6 0.35
17 6 0.35
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (16 bp):
AAAAATTTAAACTTAA
Found at i:2769195 original size:39 final size:39
Alignment explanation
Indices: 2769140--2769216 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
2769130 TAAAGATGAG
*
2769140 ACTAATGCATGGATTCTTTA-TTGAAATCCAAAAAATGTA
1 ACTAATGCATGAATTCTTTATTTG-AATCCAAAAAATGTA
2769179 ACTAATGCATGAATTCTTTATTTGAATCCAAAAAATGT
1 ACTAATGCATGAATTCTTTATTTGAATCCAAAAAATGT
2769217 GATTAATATG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
39 33 0.92
40 3 0.08
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (39 bp):
ACTAATGCATGAATTCTTTATTTGAATCCAAAAAATGTA
Found at i:2771890 original size:13 final size:13
Alignment explanation
Indices: 2771872--2771897 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2771862 CAATTTTTTG
2771872 TGTATCGATACAT
1 TGTATCGATACAT
2771885 TGTATCGATACAT
1 TGTATCGATACAT
2771898 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2778455 original size:51 final size:52
Alignment explanation
Indices: 2778359--2778494 Score: 174
Period size: 51 Copynumber: 2.7 Consensus size: 52
2778349 ATTTAACTGG
* * *
2778359 ATGTATCGATACATTAAAG-ATCTATCGATACATTTGAGTCAAAAACCCAAA
1 ATGTATCGATACAATGAAGAATGTATCGATACATTTGAGTCAAAAACCCAAA
* *
2778410 ATGTATTGATACAATGAAGAATGTATCGATACATTTG-GATC-AAAACCCAGA
1 ATGTATCGATACAATGAAGAATGTATCGATACATTTGAG-TCAAAAACCCAAA
*
2778461 ATGT-TCGATAAAATGAA-AATGTATCGATACATTT
1 ATGTATCGATACAATGAAGAATGTATCGATACATTT
2778495 TCTTTCTAGA
Statistics
Matches: 76, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
49 17 0.22
50 11 0.14
51 30 0.39
52 18 0.24
ACGTcount: A:0.42, C:0.14, G:0.15, T:0.29
Consensus pattern (52 bp):
ATGTATCGATACAATGAAGAATGTATCGATACATTTGAGTCAAAAACCCAAA
Found at i:2780761 original size:149 final size:146
Alignment explanation
Indices: 2780484--2780929 Score: 431
Period size: 149 Copynumber: 3.0 Consensus size: 146
2780474 AAATAAATGA
* * * * * *
2780484 AAAACCAAACCTATCCGTAATACATACCCTTAGCATAGAAACGACCTGGTAGTTTCGCAGGACTA
1 AAAACAAAACCCATCC-TAATACATA-CCTTGGCATAGAAGCGACCTAGTAGTTTCGTAGGACTA
** * ** *
2780549 GGTTTCGAAGAAAAATGCTAAAAGG-TCCTTAAGGTCTACGATCAACTTAGAAGTAC-CTGGTGA
64 GGTTTCGGGGAAAAATGCTAAAAGGTTCCTTAAGGTCTACCATTGACTTAGAAGTGCTC-GGTGA
2780612 TCCTAAAGGACTTAAAAACG
128 TCCTAAAGGACTTAAAAA-G
* * * *
2780632 TAAAACTAGACCTTCA-CCTAATACATACCTGTGGTATAGAAGCGACCCAGTAGTTTCGTAGGAC
1 -AAAACAAAACC--CATCCTAATACATACCT-TGGCATAGAAGCGACCTAGTAGTTTCGTAGGAC
* * * * *
2780696 TACGTTTTGGGGAAAAATGCTAAAAGGTTCC-TAAGGTTTACCATTGACTTATAAGTGCTCAGTG
62 TAGGTTTCGGGGAAAAATGCTAAAAGGTTCCTTAAGGTCTACCATTGACTTAGAAGTGCTCGGTG
*
2780760 ATCC-AAAGGGACGTGAAAAAG
127 ATCCTAAA-GGAC-TTAAAAAG
* * * **
2780781 ATAACAAAACCCATTTCTAATTCATACCTTCGGCATAGAAGCGCACCTAGTAGTTTTATAGGACT
1 AAAACAAAACCCA-TCCTAATACATACCTT-GGCATAGAAGCG-ACCTAGTAGTTTCGTAGGACT
* *
2780846 AGGTTTCGGGG-AAAATGCTAACA--TATCCTTAAGGTCTGCCATTGACTTAGAAGTGCTCGGTG
63 AGGTTTCGGGGAAAAATGCTAAAAGGT-TCCTTAAGGTCTACCATTGACTTAGAAGTGCTCGGTG
*
2780908 ATCCTAGAGGACTTGAAAAAG
127 ATCCTAAAGGACTT-AAAAAG
2780929 A
1 A
2780930 TTAAAATAAC
Statistics
Matches: 243, Mismatches: 39, Indels: 31
0.78 0.12 0.10
Matches are distributed among these distances:
146 3 0.01
147 5 0.02
148 92 0.38
149 130 0.53
150 12 0.05
151 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (146 bp):
AAAACAAAACCCATCCTAATACATACCTTGGCATAGAAGCGACCTAGTAGTTTCGTAGGACTAGG
TTTCGGGGAAAAATGCTAAAAGGTTCCTTAAGGTCTACCATTGACTTAGAAGTGCTCGGTGATCC
TAAAGGACTTAAAAAG
Found at i:2784080 original size:14 final size:14
Alignment explanation
Indices: 2784061--2784088 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2784051 AGACAGCGCA
2784061 GACGAAATTAGGTG
1 GACGAAATTAGGTG
2784075 GACGAAATTAGGTG
1 GACGAAATTAGGTG
2784089 TCTACAACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.36, T:0.21
Consensus pattern (14 bp):
GACGAAATTAGGTG
Found at i:2784591 original size:43 final size:42
Alignment explanation
Indices: 2784542--2785109 Score: 316
Period size: 43 Copynumber: 13.4 Consensus size: 42
2784532 AGCCGACAGA
* *
2784542 TAAACAAAGGATACAAAAGTTAACTGGGGATTAAACTGACAAG
1 TAAACAAAGGATA-AAAAGTTAACTCGGGATTGAACTGACAAG
* * * * * * * * *
2784585 TCAACAAAGGATAAAAGGATTTACCCGAGACT-AAGCCGATATG
1 TAAACAAAGGATAAAAAG-TTAACTCGGGATTGAA-CTGACAAG
* * *
2784628 TAAACAAAGGATAAAAAGTTGAC-CGAGATTGAACTAACAAG
1 TAAACAAAGGATAAAAAGTTAACTCGGGATTGAACTGACAAG
* * * * * * * *
2784669 TCAACAAAAGATAAAAGGATCTATCT-AGGATTGAGCCGACAGG
1 TAAACAAAGGATAAAAAG-T-TAACTCGGGATTGAACTGACAAG
*
2784712 TAAACAAAGGATAAAAAGTTAACT-GGGATTGAACCGACAAG
1 TAAACAAAGGATAAAAAGTTAACTCGGGATTGAACTGACAAG
* * * * ** *
2784753 TCAACAAAGGATAAAAGGATTTACCCGGGGCT-AAGTCGAC-AG
1 TAAACAAAGGATAAAAAG-TTAACTCGGGATTGAACT-GACAAG
* *
2784795 TTAAACAAAGGATATAAAAGTTGACT-GGGATTGAATTGACAAG
1 -TAAACAAAGGATA-AAAAGTTAACTCGGGATTGAACTGACAAG
* * * * * *
2784838 TCAACAAATGATAAAAAGATTTACTAGGGACT-AAGCTGACAAT
1 TAAACAAAGGATAAAAAG-TTAACTCGGGATTGAA-CTGACAAG
*
2784881 TAAATAAAGGATAAAAAGTTAA--CGGGAATTGAACTGACAAG
1 TAAACAAAGGATAAAAAGTTAACTCGGG-ATTGAACTGACAAG
* * * * * *** * * *
2784922 TTAACAAAAGATAAAAAAATTTACTCGAGACAAAACCGATAGG
1 TAAACAAAGGAT-AAAAAGTTAACTCGGGATTGAACTGACAAG
* * * *
2784965 TAAAACAAAAGATAAAAATATTAAC-CAGGATTGAACCGACAAG
1 T-AAACAAAGGATAAAAA-GTTAACTCGGGATTGAACTGACAAG
* * * * * *
2785008 TTAACAAAAGATAAAAGGATTTACTCGGGATT-AAGTAGACAGG
1 TAAACAAAGGATAAAAAG-TTAACTCGGGATTGAACT-GACAAG
* *
2785051 TAAACAACGGATAAAAAGGTTAACT-AGGATTGAACTGACAAG
1 TAAACAAAGGATAAAAA-GTTAACTCGGGATTGAACTGACAAG
*
2785093 TCAACAAAGGATAAAAA
1 TAAACAAAGGATAAAAA
2785110 AGATACTTGA
Statistics
Matches: 394, Mismatches: 103, Indels: 57
0.71 0.19 0.10
Matches are distributed among these distances:
40 3 0.01
41 82 0.21
42 105 0.27
43 181 0.46
44 23 0.06
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.19
Consensus pattern (42 bp):
TAAACAAAGGATAAAAAGTTAACTCGGGATTGAACTGACAAG
Found at i:2784844 original size:85 final size:84
Alignment explanation
Indices: 2784328--2785108 Score: 730
Period size: 85 Copynumber: 9.2 Consensus size: 84
2784318 AGGCAGTCAG
* * **
2784328 GTCAACAAAAGATGAAAGGGGTTAC-CTGGGACTAAGCCGACAGGTAAACAAAGGATACAAAAGT
1 GTCAACAAAGGATAAAAGGATTTACTC-GGGACTAAGCCGACAGGTAAACAAAGGATA-AAAAGT
* * * **
2784392 TGAC-GAAGACTGAACCAACAA
64 TAACTG-GGATTGAACTGACAA
* ** * * ** *
2784413 GTCAACAAAAGG-TAAAAAGATTTACTTAGAACTAAGCTGATGGGTAAACAAAGAATAAAAAGGT
1 GTCAAC-AAAGGATAAAAGGATTTACTCGGGACTAAGCCGACAGGTAAACAAAGGATAAAAA-GT
* ** *
2784477 TGACTAAGATTGAA-TCAACAA
64 TAACTGGGATTGAACT-GACAA
* * *
2784498 GTCAA-AAAGGGATAAAAGGATTTACTTGAGACTAAGCCGACAGATAAACAAAGGATACAAAAGT
1 GTCAACAAA-GGATAAAAGGATTTACTCGGGACTAAGCCGACAGGTAAACAAAGGATA-AAAAGT
*
2784562 TAACTGGGGATTAAACTGACAA
64 TAACT-GGGATTGAACTGACAA
* * * * *
2784584 GTCAACAAAGGATAAAAGGATTTACCCGAGACTAAGCCGATATGTAAACAAAGGATAAAAAGTTG
1 GTCAACAAAGGATAAAAGGATTTACTCGGGACTAAGCCGACAGGTAAACAAAGGATAAAAAGTTA
* * *
2784649 ACCGAGATTGAACTAACAA
66 ACTGGGATTGAACTGACAA
* * * * *
2784668 GTCAACAAAAGATAAAAGGATCTA-TCTAGGATTGAGCCGACAGGTAAACAAAGGATAAAAAGTT
1 GTCAACAAAGGATAAAAGGATTTACTC-GGGACTAAGCCGACAGGTAAACAAAGGATAAAAAGTT
*
2784732 AACTGGGATTGAACCGACAA
65 AACTGGGATTGAACTGACAA
* * * *
2784752 GTCAACAAAGGATAAAAGGATTTACCCGGGGCTAAGTCGACAGTTAAACAAAGGATATAAAAGTT
1 GTCAACAAAGGATAAAAGGATTTACTCGGGACTAAGCCGACAGGTAAACAAAGGATA-AAAAGTT
* *
2784817 GACTGGGATTGAATTGACAA
65 AACTGGGATTGAACTGACAA
* * * * ** *
2784837 GTCAACAAATGATAAAAAGATTTACTAGGGACTAAGCTGACAATTAAATAAAGGATAAAAAGTTA
1 GTCAACAAAGGATAAAAGGATTTACTCGGGACTAAGCCGACAGGTAAACAAAGGATAAAAAGTTA
2784902 AC-GGGAATTGAACTGACAA
66 ACTGGG-ATTGAACTGACAA
* * ** * * * * * *
2784921 GTTAACAAAAGATAAAAAAATTTACTCGAGACAAAACCGATAGGTAAAACAAAAGATAAAAATAT
1 GTCAACAAAGGATAAAAGGATTTACTCGGGACTAAGCCGACAGGT-AAACAAAGGATAAAAA-GT
** *
2784986 TAACCAGGATTGAACCGACAA
64 TAACTGGGATTGAACTGACAA
* * * ** *
2785007 GTTAACAAAAGATAAAAGGATTTACTCGGGATTAAGTAGACAGGTAAACAACGGATAAAAAGGTT
1 GTCAACAAAGGATAAAAGGATTTACTCGGGACTAAGCCGACAGGTAAACAAAGGATAAAAA-GTT
*
2785072 AACTAGGATTGAACTGACAA
65 AACTGGGATTGAACTGACAA
2785092 GTCAACAAAGGATAAAA
1 GTCAACAAAGGATAAAA
2785109 AAGATACTTG
Statistics
Matches: 569, Mismatches: 109, Indels: 36
0.80 0.15 0.05
Matches are distributed among these distances:
83 7 0.01
84 188 0.33
85 249 0.44
86 119 0.21
87 6 0.01
ACGTcount: A:0.47, C:0.13, G:0.21, T:0.19
Consensus pattern (84 bp):
GTCAACAAAGGATAAAAGGATTTACTCGGGACTAAGCCGACAGGTAAACAAAGGATAAAAAGTTA
ACTGGGATTGAACTGACAA
Found at i:2784999 original size:339 final size:339
Alignment explanation
Indices: 2784360--2785109 Score: 890
Period size: 339 Copynumber: 2.2 Consensus size: 339
2784350 TACCTGGGAC
* * * *
2784360 TAAGCCGACAGGTAAACAAAGGATACAAAAGTTGAC-GAAGACTGAACCAACAAGTCAACAAAAG
1 TAAGCCGACAGGTAAACAAAGGATA-AAAAGTTAACTG-GGATTGAACCGACAAGTCAAC-AAAG
** **
2784424 G-TAAAAAGATTTACTTAGAACTAAGCTGATGGGTAAACAAAGAATAAAAAGGTTGACTAAGATT
63 GATAAAAAGATTTACCCAGAACTAAGCTGACAGGTAAACAAAGAATAAAAAGGTTGACTAAGATT
* *
2784488 GAATCAACAAGTCAAAAAGGGATAAAAGGATTTACTTGAGACTAAGCCGACAGATAAACAAAGGA
128 GAATCAACAAGTCAAAAAGGGATAAAAAGATTTACTAGAGACTAAGCCGACAGATAAACAAAGGA
* * ** *
2784553 TACAAAAGTTAACTGGGGATTAAACTGACAAGTCAACAAAGGATAAAAGGATTTACCCGAGACTA
193 TACAAAAGTTAACTGGGAATTAAACTGACAAGTCAACAAAAGATAAAAAAATTTACCCGAGACAA
* * * * * *
2784618 AGCCGATATGTAAACAAAGGATAAAAAGTTGACCGAGATTGAACTAACAAGTCAACAAAAGATAA
258 AACCGATAGGTAAACAAAAGATAAAAAATTAACCGAGATTGAACCAACAAGTCAACAAAAGATAA
2784683 AAGGATCTA-TCTAGGAT
323 AAGGATCTACTC-AGGAT
*
2784700 TGAGCCGACAGGTAAACAAAGGATAAAAAGTTAACTGGGATTGAACCGACAAGTCAACAAAGGAT
1 TAAGCCGACAGGTAAACAAAGGATAAAAAGTTAACTGGGATTGAACCGACAAGTCAACAAAGGAT
* * ** * * **
2784765 AAAAGGATTTACCCGGGGCTAAG-TCGACAGTTAAACAAAGGATATAAAA-GTTGACTGGGATTG
66 AAAAAGATTTACCCAGAACTAAGCT-GACAGGTAAACAAAGAATA-AAAAGGTTGACTAAGATTG
** * * * *
2784828 AATTGACAAGTCAACAAA-TGATAAAAAGATTTACTAGGGACTAAGCTGACA-ATTAAATAAAGG
129 AATCAACAAGTCAA-AAAGGGATAAAAAGATTTACTAGAGACTAAGCCGACAGA-TAAACAAAGG
* * *
2784891 ATA-AAAAGTTAAC-GGGAATTGAACTGACAAGTTAACAAAAGATAAAAAAATTTACTCGAGACA
192 ATACAAAAGTTAACTGGGAATTAAACTGACAAGTCAACAAAAGATAAAAAAATTTACCCGAGACA
* *
2784954 AAACCGATAGGTAAAACAAAAGATAAAAATATTAACC-AGGATTGAACCGACAAGTTAACAAAAG
257 AAACCGATAGGT-AAACAAAAGATAAAAA-ATTAACCGA-GATTGAACCAACAAGTCAACAAAAG
* *
2785018 ATAAAAGGATTTACTCGGGAT
319 ATAAAAGGATCTACTCAGGAT
** * * *
2785039 TAAGTAGACAGGTAAACAACGGATAAAAAGGTTAACTAGGATTGAACTGACAAGTCAACAAAGGA
1 TAAGCCGACAGGTAAACAAAGGATAAAAA-GTTAACTGGGATTGAACCGACAAGTCAACAAAGGA
2785104 TAAAAA
65 TAAAAA
2785110 AGATACTTGA
Statistics
Matches: 349, Mismatches: 50, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
337 52 0.15
338 33 0.09
339 192 0.55
340 72 0.21
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.19
Consensus pattern (339 bp):
TAAGCCGACAGGTAAACAAAGGATAAAAAGTTAACTGGGATTGAACCGACAAGTCAACAAAGGAT
AAAAAGATTTACCCAGAACTAAGCTGACAGGTAAACAAAGAATAAAAAGGTTGACTAAGATTGAA
TCAACAAGTCAAAAAGGGATAAAAAGATTTACTAGAGACTAAGCCGACAGATAAACAAAGGATAC
AAAAGTTAACTGGGAATTAAACTGACAAGTCAACAAAAGATAAAAAAATTTACCCGAGACAAAAC
CGATAGGTAAACAAAAGATAAAAAATTAACCGAGATTGAACCAACAAGTCAACAAAAGATAAAAG
GATCTACTCAGGAT
Found at i:2790398 original size:1 final size:1
Alignment explanation
Indices: 2790337--2790386 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
2790327 CGTCATTCTC
* * * **
2790337 AAAAAAAAAAAAAAAAAAGAAAACAAAAAACAAAAACCAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
2790387 CAACACAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.90, C:0.08, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:2791748 original size:28 final size:28
Alignment explanation
Indices: 2791704--2792233 Score: 573
Period size: 28 Copynumber: 18.6 Consensus size: 28
2791694 AATACGACCT
*
2791704 CTTTTCAAAGCCTACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* **
2791732 CTTTTCAAAGCCCACAATTCAACGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-AC
*
2791761 CTTTTTTAAAGCCCACAAGTCAGTGGCAACC
1 C-TTTTCAAAGCCCACAAGTCAGTGGC-A-C
* *
2791792 CTTTTTAAAGTCCACAAGTCAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
2791821 C-TTTCAAAGCCCACAAGTCAGTGGCAAC
1 CTTTTCAAAGCCCACAAGTCAGTGGC-AC
* *
2791849 CATTTTCAAAACCCATAAGTCAGTGGCATC
1 C-TTTTCAAAGCCCACAAGTCAGTGGCA-C
*
2791879 C-TTTCAAAGCCCACAAGTCAGTGACAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
2791906 CTTTTCAAAGCCCATAAGTCAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
2791934 CTTTTCAAAGCCCACAAGTAAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * * **
2791962 CATTTCAGAGCCCACAAGTTAGTGGCTT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
2791990 CTTTTCAAAGCCCACATGTTAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
** *
2792018 CTTTTCAAAGCCTGCAAGTCAATGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
2792046 CTTCTT-AAAGCCCACAAGTCAGTGGCAC
1 CTT-TTCAAAGCCCACAAGTCAGTGGCAC
2792074 CTTTTCAAAGCCCACAAGTCAGTGGCAC
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* * *
2792102 CTTCTCAAAGCCCACAAGTTAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *
2792130 ATTTTCAAAGCCCACAAGTCAGTGGCAT
1 CTTTTCAAAGCCCACAAGTCAGTGGCAC
* *** *
2792158 CTTTTTAAAGCTTGCAAGTTAGTGGCATC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-C
* *
2792187 C-TTTCAAAGCCCATACAAGTCGGTGGCAA
1 CTTTTCAAAGCCC--ACAAGTCAGTGGCAC
*
2792216 TTTTCTCTAAAGCCCACA
1 CTTT-TC-AAAGCCCACA
2792234 TAAGTTGGTG
Statistics
Matches: 426, Mismatches: 60, Indels: 30
0.83 0.12 0.06
Matches are distributed among these distances:
27 4 0.01
28 313 0.73
29 11 0.03
30 87 0.20
31 4 0.01
32 7 0.02
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (28 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCAC
Found at i:2791774 original size:30 final size:30
Alignment explanation
Indices: 2791704--2791898 Score: 132
Period size: 30 Copynumber: 6.7 Consensus size: 30
2791694 AATACGACCT
* * **
2791704 CTTTTCAAAGCCTACAAGTCAGTGGC-A-C
1 CTTTTTAAAGCCCACAAGTCAACGGCAACC
* *
2791732 CTTTTCAAAGCCCACAATTCAACGGCAACC
1 CTTTTTAAAGCCCACAAGTCAACGGCAACC
* **
2791762 TTTTTTAAAGCCCACAAGTCAGTGGCAACC
1 CTTTTTAAAGCCCACAAGTCAACGGCAACC
* ** *
2791792 CTTTTTAAAGTCCACAAGTCAGTGGC-ATC
1 CTTTTTAAAGCCCACAAGTCAACGGCAACC
* **
2791821 C-TTTCAAAGCCCACAAGTCAGTGGCAACC
1 CTTTTTAAAGCCCACAAGTCAACGGCAACC
* * * * ** *
2791850 ATTTTCAAAACCCATAAGTCAGTGGC-ATC
1 CTTTTTAAAGCCCACAAGTCAACGGCAACC
*
2791879 C-TTTCAAAGCCCACAAGTCA
1 CTTTTTAAAGCCCACAAGTCA
2791899 GTGACACCTT
Statistics
Matches: 141, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
28 61 0.43
29 8 0.06
30 72 0.51
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (30 bp):
CTTTTTAAAGCCCACAAGTCAACGGCAACC
Found at i:2798562 original size:79 final size:79
Alignment explanation
Indices: 2798475--2798645 Score: 222
Period size: 79 Copynumber: 2.2 Consensus size: 79
2798465 AAAGGCGGGG
* *
2798475 TTGGAGTATCCCCTCAGAAATAACGGG-GCTGGAGTAT-CCTCGATTGT-GAAAAATCGATGTTC
1 TTGGAGTATCCCCTCAGAAATAACGGGATC-GGAGTATCCCT-GATTGTAG-AAAATCGATATTC
*
2798537 TGGAAATAAAACCAGGA
63 TGAAAATAAAACCAGGA
* *
2798554 TTGGAGTATCCTCTCGGAAATAACGGGATCGGAGTATCCCTGATTGTAGAAAATCGATATTCTGA
1 TTGGAGTATCCCCTCAGAAATAACGGGATCGGAGTATCCCTGATTGTAGAAAATCGATATTCTGA
* * *
2798619 AAATAAAATCGGGG
66 AAATAAAACCAGGA
2798633 TTGGAGTATCCCC
1 TTGGAGTATCCCC
2798646 GATGGTGGAA
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
79 75 0.94
80 5 0.06
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26
Consensus pattern (79 bp):
TTGGAGTATCCCCTCAGAAATAACGGGATCGGAGTATCCCTGATTGTAGAAAATCGATATTCTGA
AAATAAAACCAGGA
Found at i:2798674 original size:51 final size:50
Alignment explanation
Indices: 2798616--2798747 Score: 165
Period size: 51 Copynumber: 2.6 Consensus size: 50
2798606 ATCGATATTC
* * *
2798616 TGAAAATAAAATCGGGGTTGGAGTATCCCCGATGGTGGAAATTTGGTGTTT
1 TGAAAATAAAA-CAGGGTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTT
* * **
2798667 TGGAAATAAAACCAGGGTTGAAGTATCCTTGATGGTGAAAAATTGGTGTTT
1 TGAAAATAAAA-CAGGGTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTT
*
2798718 TGAAAATAAAACTAGGGTTGGAGCATCCCC
1 TGAAAATAAAAC-AGGGTTGGAGTATCCCC
2798748 TCATAAATAA
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 1 0.01
51 66 0.99
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.29
Consensus pattern (50 bp):
TGAAAATAAAACAGGGTTGGAGTATCCCCGATGGTGAAAAATTGGTGTTT
Found at i:2799675 original size:17 final size:17
Alignment explanation
Indices: 2799655--2799690 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
2799645 AAGGAAGATG
* *
2799655 AAGAAGAAAGAAAGAAA
1 AAGAAAAAAAAAAGAAA
2799672 AAGAAAAAAAAAAGAAA
1 AAGAAAAAAAAAAGAAA
2799689 AA
1 AA
2799691 ATATGAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAAAAAGAAA
Found at i:2800075 original size:2 final size:2
Alignment explanation
Indices: 2800062--2800092 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
2800052 TTATTTTATT
*
2800062 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2800093 TTTGAAAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2802734 original size:237 final size:237
Alignment explanation
Indices: 2802341--2802995 Score: 849
Period size: 237 Copynumber: 2.8 Consensus size: 237
2802331 GGTATTTTAG
* * *
2802341 AAATAAAATCGGGGTTGGAGTATCCTTTCAGAAATAACAGGGTTAGAGTATCC-CTGATTGTGGA
1 AAATAAAATCGGGGTTGGAGTATCCTCTCAGAAATAACGGGGTTGGAGTATCCTCTGATTGT-GA
* *
2802405 AAATCGATGTTTTGGAAATAAAACCGAGGTTGGAGTATCCCTTCAGAAATAATAGGGTTGGAGTA
65 AAATCGATGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCTTCAGAAATAATGGGGTTGGAGTA
* * *
2802470 TCCCTCATTGTAAAAAATTAGTGTTTTGGAAATAAAA-CTGGGGTTGGAGTATTCC-CTC-AGAA
130 TCCC-AATTGTGAAAAATCAGTGTTTTGGAAATAAAATC-GGGGTTGGAGTATTCCTCTCGAG-A
*
2802532 ATAACGGGGTTGGAGTATCCTCGATTATGAAAAATCAATGTTTTGA
192 ATAACAGGGTTGGAGTATCCTCGATTATGAAAAATCAATGTTTTGA
*
2802578 AAATAAAA-CTGGGGTTGGAGTATCCTCTCAGAAATAACGGGGTTGGAATATCCTC-GATTGTGA
1 AAATAAAATC-GGGGTTGGAGTATCCTCTCAGAAATAACGGGGTTGGAGTATCCTCTGATTGTG-
* * * * *
2802641 AAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCTTCAAAAATAACGGGGTTGGAGT
64 AAAATCGATGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCTTCAGAAATAATGGGGTTGGAGT
* * *
2802706 ATCTCCAATTGTGAAAAATCATTGTTTTGGGAATAAAAATCGAGGTTGGAGTA-TCCTCTCGAGA
129 ATC-CCAATTGTGAAAAATCAGTGTTTTGGAAAT-AAAATCGGGGTTGGAGTATTCCTCTCGAGA
* * * *
2802770 ATAACAGGGTTGGAGTATCCTTGATTGTGAAAAATTAGTGTTTTGA
192 ATAACAGGGTTGGAGTATCCTCGATTATGAAAAATCAATGTTTTGA
* * * *
2802816 AAATAAAATCGAGGTTGGAGTATCCTCTCAAAAATAACGGGGTTGGAGTAT-CTCTGATTATGGA
1 AAATAAAATCGGGGTTGGAGTATCCTCTCAGAAATAACGGGGTTGGAGTATCCTCTGATTGTGAA
* * ** ** *
2802880 AATCGATGCTTTGGAAATAAAATCGGGGTTAAAGTATCCCTTTGGAAATAATGGGGTTAGAGTAT
66 AATCGATGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCTTCAGAAATAATGGGGTTGGAGTAT
* * *
2802945 CCCCGATTATGAAAAATCGGTGTTTTGGAAATAAAATCGGGGTTGGAGTAT
131 -CCCAATTGTGAAAAATCAGTGTTTTGGAAATAAAATCGGGGTTGGAGTAT
2802996 CCCCGATTAT
Statistics
Matches: 361, Mismatches: 45, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
236 19 0.05
237 222 0.61
238 116 0.32
239 4 0.01
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (237 bp):
AAATAAAATCGGGGTTGGAGTATCCTCTCAGAAATAACGGGGTTGGAGTATCCTCTGATTGTGAA
AATCGATGTTTTGGAAATAAAACCGGGGTTGGAGTATCCCTTCAGAAATAATGGGGTTGGAGTAT
CCCAATTGTGAAAAATCAGTGTTTTGGAAATAAAATCGGGGTTGGAGTATTCCTCTCGAGAATAA
CAGGGTTGGAGTATCCTCGATTATGAAAAATCAATGTTTTGA
Found at i:2802944 original size:28 final size:30
Alignment explanation
Indices: 2802888--2802947 Score: 88
Period size: 28 Copynumber: 2.0 Consensus size: 30
2802878 GAAATCGATG
2802888 CTTTGGAAATAAAATCGGGGTTAAAGTATCC
1 CTTTGGAAAT-AAATCGGGGTTAAAGTATCC
*
2802919 CTTTGGAAAT-AAT-GGGGTTAGAGTATCC
1 CTTTGGAAATAAATCGGGGTTAAAGTATCC
2802947 C
1 C
2802948 CGATTATGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 15 0.54
29 3 0.11
31 10 0.36
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (30 bp):
CTTTGGAAATAAATCGGGGTTAAAGTATCC
Found at i:2802994 original size:51 final size:51
Alignment explanation
Indices: 2802920--2803050 Score: 196
Period size: 51 Copynumber: 2.6 Consensus size: 51
2802910 AAAGTATCCC
* *
2802920 TTTGGAAAT--AAT-GGGGTTAGAGTATCCCCGATTATGAAAAATCGGTGT
1 TTTGGAAATAAAATCGGGGTTGGAGTATCCCCGATTATGAAAAATCGGTAT
*
2802968 TTTGGAAATAAAATCGGGGTTGGAGTATCCCCGATTATGAAGAATCGGTAT
1 TTTGGAAATAAAATCGGGGTTGGAGTATCCCCGATTATGAAAAATCGGTAT
* *
2803019 TTTGGGAATAAAATCGGGGTAGGAGTATCCCC
1 TTTGGAAATAAAATCGGGGTTGGAGTATCCCC
2803051 TCGGAAATAA
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
48 9 0.12
50 3 0.04
51 63 0.84
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (51 bp):
TTTGGAAATAAAATCGGGGTTGGAGTATCCCCGATTATGAAAAATCGGTAT
Found at i:2802998 original size:79 final size:79
Alignment explanation
Indices: 2802301--2802998 Score: 739
Period size: 79 Copynumber: 8.8 Consensus size: 79
2802291 TGCGACAATA
* ** * * *
2802301 GGGTTGGACTATCTGCGATTGTGGAAAATCGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCC
* *
2802366 TTTCAGAAATAACA
66 CTTCAGAAATAACG
* * * * * *
2802380 GGGTTAGAGTATCCCTGATTGTGGAAAATCGATGTTTTGGAAATAAAACCGAGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCC
**
2802445 CTTCAGAAATAATA
66 CTTCAGAAATAACG
* **
2802459 GGGTTGGAGTATCCCTC-ATTGTAAAAAATTAGTGTTTTGGAAATAAAA-CTGGGGTTGGAGTAT
1 GGGTTGGAGTATCCC-CGATTGTGAAAAATCGGTGTTTTGGAAATAAAATC-GGGGTTGGAGTA-
2802522 TCCC-TCAGAAATAACG
63 TCCCTTCAGAAATAACG
* * ** *
2802538 GGGTTGGAGTATCCTCGATTATGAAAAATCAATGTTTTGAAAATAAAA-CTGGGGTTGGAGTAT-
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTGGAAATAAAATC-GGGGTTGGAGTATC
2802601 CCTCTCAGAAATAACG
65 CCT-TCAGAAATAACG
* * * * *
2802617 GGGTTGGAATATCCTCGATTGTGAAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCC
*
2802682 CTTCAAAAATAACG
66 CTTCAGAAATAACG
* * ** * *
2802696 GGGTTGGAGTATCTCCAATTGTGAAAAATCATTGTTTTGGGAATAAAAATCGAGGTTGGAGTAT-
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTGGAAAT-AAAATCGGGGTTGGAGTATC
*
2802760 CCTCTC-GAGAATAACA
65 CCT-TCAGA-AATAACG
** ** * *
2802776 GGGTTGGAGTATCCTTGATTGTGAAAAATTAGTGTTTTGAAAATAAAATCGAGGTTGGAGTAT-C
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCC
*
2802840 CTCTCAAAAATAACG
66 CT-TCAGAAATAACG
* * * * * * **
2802855 GGGTTGGAGTATCTCTGATTATG-GAAATCGATGCTTTGGAAATAAAATCGGGGTTAAAGTATCC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCC
** *
2802919 CTTTGGAAATAATG
66 CTTCAGAAATAACG
* *
2802933 GGGTTAGAGTATCCCCGATTATGAAAAATCGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCC
2802998 C
66 C
2802999 CGATTATGAA
Statistics
Matches: 524, Mismatches: 81, Indels: 28
0.83 0.13 0.04
Matches are distributed among these distances:
77 2 0.00
78 61 0.12
79 391 0.75
80 70 0.13
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCGATTGTGAAAAATCGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCC
CTTCAGAAATAACG
Found at i:2805248 original size:14 final size:15
Alignment explanation
Indices: 2805229--2805262 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
2805219 AAGAAAAGCC
*
2805229 AAAAAGAAATGAA-A
1 AAAAAGAAAGGAAGA
2805243 AAAAAGAAAGGAAGA
1 AAAAAGAAAGGAAGA
2805258 AAAAA
1 AAAAA
2805263 AAGTAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (15 bp):
AAAAAGAAAGGAAGA
Found at i:2805252 original size:18 final size:17
Alignment explanation
Indices: 2805231--2805265 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
2805221 GAAAAGCCAA
2805231 AAAGAAATGAAAAAAAAG
1 AAAGAAA-GAAAAAAAAG
*
2805249 AAAGGAAGAAAAAAAAG
1 AAAGAAAGAAAAAAAAG
2805266 TAAATAATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.77, C:0.00, G:0.20, T:0.03
Consensus pattern (17 bp):
AAAGAAAGAAAAAAAAG
Found at i:2806237 original size:35 final size:35
Alignment explanation
Indices: 2806197--2806330 Score: 90
Period size: 35 Copynumber: 3.5 Consensus size: 35
2806187 AACAAACTTT
2806197 TTTTCATTCTCGTTTGACTGTACCTAGTCAAACTC
1 TTTTCATTCTCGTTTGACTGTACCTAGTCAAACTC
* * *
2806232 TTTTCATTATCATTTGACTTGATGGTTCTTGCCCTAGTCAAACATC
1 TTTTCATTCTCGTTTGAC----T-G----T-ACCTAGTCAAAC-TC
* * * *
2806278 TTTTCGTTCTTGTTTGACTATACCTGGTCAAACTC
1 TTTTCATTCTCGTTTGACTGTACCTAGTCAAACTC
2806313 TTTTCATTACT-GTTTGAC
1 TTTTCATT-CTCGTTTGAC
2806331 GTGATGGTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
35 32 0.42
36 12 0.16
37 1 0.01
39 1 0.01
40 1 0.01
42 1 0.01
44 1 0.01
45 11 0.14
46 16 0.21
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCATTCTCGTTTGACTGTACCTAGTCAAACTC
Found at i:2806329 original size:81 final size:80
Alignment explanation
Indices: 2806197--2806679 Score: 340
Period size: 81 Copynumber: 6.0 Consensus size: 80
2806187 AACAAACTTT
* * * * * *
2806197 TTTTCATTCTCGTTTGACTGTACCTAGTCAAACTCTTTTCATTATCATTTGACTTGATGGTTCTT
1 TTTTCATTCCCGTTTGACTATACCTGGTCAAACTCTTTTCATTAT-GTTTGACATGATGGTTCTC
2806262 GCCCTAGTCAAACATC
65 GCCCTAGTCAAACATC
* ** *
2806278 TTTTCGTTCTTGTTTGACTATACCTGGTCAAACTCTTTTCATTACTGTTTGACGTGATGGTTCTC
1 TTTTCATTCCCGTTTGACTATACCTGGTCAAACTCTTTTCATTA-TGTTTGACATGATGGTTCTC
* * *
2806343 ACCCTGGTCAAACATTT
65 GCCCTAGTCAAACA-TC
* * *
2806360 TTTTTATTCCCGTTTAACTATAACTGGTCAAACTCTTTTCATTATTGTTTGACATGATGGTTCTC
1 TTTTCATTCCCGTTTGACTATACCTGGTCAAACTCTTTTCATTA-TGTTTGACATGATGGTTCTC
2806425 GCCCTAGTCAAACATC
65 GCCCTAGTCAAACATC
* * *
2806441 TTTTCATTCCTGTTTGACGTGATGGCTCTCGCCCTAGTCAAACT-TTTT--TTCA---TT--CCT
1 TTTTCATTCCCGTTTGAC-T-AT-AC-CT-G-----GTCAAACTCTTTTCATT-ATGTTTGACAT
* * * *
2806498 GATTGATTAT--ACCTAGTCAAAC-TT
55 GA-TGGTTCTCGCCCTAGTCAAACATC
* * * * * * * * **
2806522 TTTTTATTCCCGTTTGGCTGTACCTAGTCAGACTTTTTTCACTACTATTTGATGTGATGGTTCTC
1 TTTTCATTCCCGTTTGACTATACCTGGTCAAACTCTTTTCATTA-TGTTTGACATGATGGTTCTC
* *
2806587 ACCCTAGTCAAAGATC
65 GCCCTAGTCAAACATC
* * * * ** * **
2806603 TTTTCATTCTCGTTTGACTGTACCTGGTTAAACTCTTTTCATTCTGTTTGATGTGATGGTCCTTA
1 TTTTCATTCCCGTTTGACTATACCTGGTCAAACTCTTTTCATTATGTTTGACATGATGGTTCTCG
2806668 CCCTAGTCAAAC
66 CCCTAGTCAAAC
2806680 TCCATTCATT
Statistics
Matches: 317, Mismatches: 59, Indels: 53
0.74 0.14 0.12
Matches are distributed among these distances:
71 7 0.02
72 4 0.01
73 1 0.00
74 1 0.00
77 4 0.01
78 6 0.02
79 4 0.01
80 40 0.13
81 136 0.43
82 83 0.26
83 6 0.02
84 5 0.02
85 4 0.01
86 1 0.00
88 2 0.01
89 1 0.00
90 4 0.01
91 8 0.03
ACGTcount: A:0.20, C:0.23, G:0.14, T:0.43
Consensus pattern (80 bp):
TTTTCATTCCCGTTTGACTATACCTGGTCAAACTCTTTTCATTATGTTTGACATGATGGTTCTCG
CCCTAGTCAAACATC
Found at i:2806455 original size:46 final size:45
Alignment explanation
Indices: 2806386--2806503 Score: 164
Period size: 46 Copynumber: 2.6 Consensus size: 45
2806376 ACTATAACTG
** *
2806386 GTCAAACTCTTTTCATTATTGTTTGACATGATGGTTCTCGCCCTA
1 GTCAAACTCTTTTCATTCCTGTTTGACATGATGGCTCTCGCCCTA
*
2806431 GTCAAACATCTTTTCATTCCTGTTTGACGTGATGGCTCTCGCCCTA
1 GTCAAAC-TCTTTTCATTCCTGTTTGACATGATGGCTCTCGCCCTA
* *
2806477 GTCAAACTTTTTTTCATTCCTGATTGA
1 GTCAAAC-TCTTTTCATTCCTGTTTGA
2806504 TTATACCTAG
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
45 7 0.11
46 58 0.89
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (45 bp):
GTCAAACTCTTTTCATTCCTGTTTGACATGATGGCTCTCGCCCTA
Found at i:2806531 original size:35 final size:36
Alignment explanation
Indices: 2806473--2806560 Score: 115
Period size: 35 Copynumber: 2.5 Consensus size: 36
2806463 TGGCTCTCGC
* *
2806473 CCTAGTCAAACTTTTTTTCATTCCTGATTGATTATA
1 CCTAGTCAAACTTTTTTTCATTCCCGATTGACTATA
* * *
2806509 CCTAGTCAAACTTTTTTT-ATTCCCGTTTGGCTGTA
1 CCTAGTCAAACTTTTTTTCATTCCCGATTGACTATA
*
2806544 CCTAGTCAGACTTTTTT
1 CCTAGTCAAACTTTTTT
2806561 CACTACTATT
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
35 28 0.61
36 18 0.39
ACGTcount: A:0.20, C:0.22, G:0.11, T:0.47
Consensus pattern (36 bp):
CCTAGTCAAACTTTTTTTCATTCCCGATTGACTATA
Found at i:2806722 original size:43 final size:43
Alignment explanation
Indices: 2806625--2806723 Score: 110
Period size: 45 Copynumber: 2.3 Consensus size: 43
2806615 TTTGACTGTA
* ** * **
2806625 CCTGGTTAAACTCTTTTCATTCTGTTTGATGTGATGGTCCTTAC
1 CCTGGTCAAACTCCATTCATTATGTTTGACATGATGGT-CTTAC
*
2806669 CCTAGTCAAACTCCATTCATTTATGTTTGACATGATGGT-TTAC
1 CCTGGTCAAACTCCATTCA-TTATGTTTGACATGATGGTCTTAC
2806712 CCTGGTCAAACT
1 CCTGGTCAAACT
2806724 TTTTTCATCC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
43 15 0.33
44 15 0.33
45 16 0.35
ACGTcount: A:0.21, C:0.22, G:0.16, T:0.40
Consensus pattern (43 bp):
CCTGGTCAAACTCCATTCATTATGTTTGACATGATGGTCTTAC
Found at i:2806731 original size:43 final size:44
Alignment explanation
Indices: 2806625--2806731 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 44
2806615 TTTGACTGTA
* * **
2806625 CCTGGTTAAACTCTTTTCA-TTCTGTTTGATGTGATGGTCCTTAC
1 CCTGGTCAAACTCTTTTCATTTATGTTTGACATGATGGT-CTTAC
* **
2806669 CCTAGTCAAACTCCATTCATTTATGTTTGACATGATGGT-TTAC
1 CCTGGTCAAACTCTTTTCATTTATGTTTGACATGATGGTCTTAC
*
2806712 CCTGGTCAAACTTTTTTCAT
1 CCTGGTCAAACTCTTTTCAT
2806732 CCTTAATTGA
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
43 20 0.39
44 15 0.29
45 16 0.31
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (44 bp):
CCTGGTCAAACTCTTTTCATTTATGTTTGACATGATGGTCTTAC
Found at i:2806842 original size:42 final size:41
Alignment explanation
Indices: 2806794--2806937 Score: 116
Period size: 42 Copynumber: 3.4 Consensus size: 41
2806784 ATCAAGTATC
*
2806794 ACTTTTTGTCCTTTGTTGACTTGTCAGTTCATTTCTGGTCA
1 ACTTTTTATCCTTTGTTGACTTGTCAGTTCATTTCTGGTCA
* * * *
2806835 ACCTTTTTATCCTTAGTTTG-CTTGTCGACTT-AGTCTT-AGGTAA
1 A-CTTTTTATCCTTTG-TTGACTTGTC-AGTTCA-T-TTCTGGTCA
* *
2806878 ATCTTTTTATCCTTTGTTGATTTGTCAGTTCA-ATCTTGGTCA
1 A-CTTTTTATCCTTTGTTGACTTGTCAGTTCATTTC-TGGTCA
*
2806920 ACTTTTGTATTCTTTGTT
1 ACTTTT-TATCCTTTGTT
2806938 AACCTGTCGA
Statistics
Matches: 80, Mismatches: 13, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
40 1 0.01
41 6 0.08
42 40 0.50
43 31 0.39
44 2 0.03
ACGTcount: A:0.15, C:0.17, G:0.15, T:0.52
Consensus pattern (41 bp):
ACTTTTTATCCTTTGTTGACTTGTCAGTTCATTTCTGGTCA
Found at i:2806903 original size:43 final size:41
Alignment explanation
Indices: 2806794--2806983 Score: 127
Period size: 43 Copynumber: 4.5 Consensus size: 41
2806784 ATCAAGTATC
* * *
2806794 ACTTTTTGTCCTTTGTTGACTTGTC-AGTTCA-TTTCTGGTCAA
1 ACTTTTTATCCTTTGTTGACTTGTCGACTT-AGTCT-TGGT-AA
* *
2806836 CCTTTTTATCCTTAGTTTG-CTTGTCGACTTAGTCTTAGGTAA
1 ACTTTTTATCCTTTG-TTGACTTGTCGACTTAGTCTT-GGTAA
* * * *
2806878 ATCTTTTTATCCTTTGTTGATTTGTC-AGTTCAATCTTGGTCA
1 A-CTTTTTATCCTTTGTTGACTTGTCGACTT-AGTCTTGGTAA
* * * *
2806920 ACTTTTGTATTCTTTGTTAACCTGTCGACTTAGTCCTGGGTAA
1 ACTTTT-TATCCTTTGTTGACTTGTCGACTTAGT-CTTGGTAA
* *
2806963 CCCTTTTCATCCTTTGTTGAC
1 -ACTTTTTATCCTTTGTTGAC
2806984 CTGACTGCCT
Statistics
Matches: 114, Mismatches: 23, Indels: 21
0.72 0.15 0.13
Matches are distributed among these distances:
41 5 0.04
42 50 0.44
43 54 0.47
44 5 0.04
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (41 bp):
ACTTTTTATCCTTTGTTGACTTGTCGACTTAGTCTTGGTAA
Done.