Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold53
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4419549
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 41486 characters in sequence are not A, C, G, or T
File 26 of 28
Found at i:4026996 original size:22 final size:22
Alignment explanation
Indices: 4026971--4027034 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
4026961 TGATTATAAT
4026971 ATAATATTATGATTATTAT-TTA
1 ATAATATTATGATT-TTATATTA
* ** *
4026993 ATAATTTTAAAATTTTTTATTA
1 ATAATATTATGATTTTATATTA
*
4027015 TTAATATTATGA-TTTATATT
1 ATAATATTATGATTTTATATT
4027035 TTATCATAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
21 10 0.31
22 22 0.69
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (22 bp):
ATAATATTATGATTTTATATTA
Found at i:4028874 original size:17 final size:17
Alignment explanation
Indices: 4028844--4028877 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
4028834 TAAAAAATAA
* *
4028844 TATATTAATTTTATTTT
1 TATATAAATATTATTTT
4028861 TATATAAATATTATTTT
1 TATATAAATATTATTTT
4028878 AAGTAATATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TATATAAATATTATTTT
Found at i:4029489 original size:20 final size:20
Alignment explanation
Indices: 4029426--4029489 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
4029416 TTCATTAATA
*
4029426 ATTTAATATATTTAATA-TTT
1 ATTTAA-ATATTTAAAATTTT
4029446 ATTT-AATA-TT--AATTTT
1 ATTTAAATATTTAAAATTTT
4029462 -TTTAAAATATTTAAAATTTT
1 ATTT-AAATATTTAAAATTTT
4029482 ATTTAAAT
1 ATTTAAAT
4029490 GAATTGATCA
Statistics
Matches: 36, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
15 4 0.11
16 3 0.08
17 6 0.17
18 5 0.14
19 1 0.03
20 14 0.39
21 3 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTAAATATTTAAAATTTT
Found at i:4029751 original size:19 final size:18
Alignment explanation
Indices: 4029693--4029752 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 18
4029683 AAAACCTCAT
*
4029693 TTAATTATTTATTATATTA
1 TTAA-TATTTATTATTTTA
*
4029712 TTAAAATATTATT-TTTATA
1 TTAATAT-TTATTATTT-TA
4029731 TTAATATTTATATATTTTA
1 TTAATATTTAT-TATTTTA
4029750 TTA
1 TTA
4029753 TTATATTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
18 8 0.24
19 23 0.68
20 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTAATATTTATTATTTTA
Found at i:4031592 original size:13 final size:13
Alignment explanation
Indices: 4031574--4031598 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4031564 ACATAAATTT
4031574 TGTATCGATACAA
1 TGTATCGATACAA
4031587 TGTATCGATACA
1 TGTATCGATACA
4031599 GAACTACCAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4033992 original size:98 final size:98
Alignment explanation
Indices: 4033782--4034008 Score: 301
Period size: 98 Copynumber: 2.3 Consensus size: 98
4033772 CCAACCTCAT
* * *
4033782 TCTTTCGAGGGGATACTCCAACCCCATTTTTGAAACTTGTCAAGATTTAAATCTTTTTTTTGCCT
1 TCTTTCGAGGGGATACTCCAACCCCATTTTTAAAACTTGTCAAGATTTAAATCTTGTTTTTGCCC
* * *
4033847 AACATATCATTGTCGAGGACAATCCAAGCCCAT
66 AAAATATCATTGTCGAGGACAATACAAGCCCAC
* * * * *
4033880 TCCTCCGAGAGGATACTCCAATCCCATTTTTAAAACTTGTCAAGATTTGAATCTTGTTTTTGCCC
1 TCTTTCGAGGGGATACTCCAACCCCATTTTTAAAACTTGTCAAGATTTAAATCTTGTTTTTGCCC
* * *
4033945 AAAATATCATTGTCGAGGACATTACAATCCTAC
66 AAAATATCATTGTCGAGGACAATACAAGCCCAC
* * *
4033978 TCTTTCGAGGGGATACTTCAACTCCGTTTTT
1 TCTTTCGAGGGGATACTCCAACCCCATTTTT
4034009 CAACCAAAAG
Statistics
Matches: 108, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
98 108 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (98 bp):
TCTTTCGAGGGGATACTCCAACCCCATTTTTAAAACTTGTCAAGATTTAAATCTTGTTTTTGCCC
AAAATATCATTGTCGAGGACAATACAAGCCCAC
Found at i:4039914 original size:21 final size:21
Alignment explanation
Indices: 4039890--4039930 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4039880 AGATAATAAA
*
4039890 GAATTAACTAATAAAAACAAC
1 GAATTAACTAAGAAAAACAAC
* *
4039911 GAATTTACTAGGAAAAACAA
1 GAATTAACTAAGAAAAACAA
4039931 GAACTTGCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.59, C:0.12, G:0.10, T:0.20
Consensus pattern (21 bp):
GAATTAACTAAGAAAAACAAC
Found at i:4043049 original size:27 final size:28
Alignment explanation
Indices: 4043012--4043094 Score: 114
Period size: 27 Copynumber: 3.0 Consensus size: 28
4043002 ATCTTTTCCC
*
4043012 AAAGTCCACGACTCTGTGGTACCCTTTT
1 AAAGTCCACGACTCCGTGGTACCCTTTT
*
4043040 -AAGTCCACGACTCCGTGGCACCCTTTT
1 AAAGTCCACGACTCCGTGGTACCCTTTT
* * *
4043067 AAAGCCCACAACTCCGTGGTACCTTTTT
1 AAAGTCCACGACTCCGTGGTACCCTTTT
4043095 CTTTTCAAAG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
27 25 0.52
28 23 0.48
ACGTcount: A:0.22, C:0.33, G:0.17, T:0.29
Consensus pattern (28 bp):
AAAGTCCACGACTCCGTGGTACCCTTTT
Found at i:4043181 original size:33 final size:34
Alignment explanation
Indices: 4043062--4043253 Score: 215
Period size: 34 Copynumber: 5.9 Consensus size: 34
4043052 CCGTGGCACC
*
4043062 CTTTT-AAAGCCCACAACTCCGTGGTACCTTTTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
*
4043095 CTTTTCAAAGCCTACAACTCCGTGGCACCTTTTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
* * *
4043129 CTTTTCAAAGCCCATAACTCCATGGCACATTTTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
* *
4043163 -TTTTCAAAGTCCACAACTCTGTGGCACC-----
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
* *
4043191 CTTTT--AAGTCCACAACTCCGTGGCACCTTGTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
* *
4043223 CTTTT-TAAGTCCACAACTCCGTGGCACCTTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTT
4043254 AAGTCCAATA
Statistics
Matches: 138, Mismatches: 13, Indels: 16
0.83 0.08 0.10
Matches are distributed among these distances:
27 21 0.15
29 4 0.03
32 5 0.04
33 52 0.38
34 56 0.41
ACGTcount: A:0.22, C:0.31, G:0.12, T:0.34
Consensus pattern (34 bp):
CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
Found at i:4043199 original size:27 final size:27
Alignment explanation
Indices: 4043169--4043260 Score: 107
Period size: 33 Copynumber: 3.3 Consensus size: 27
4043159 TTTTTTTTCA
*
4043169 AAGTCCACAACTCTGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
4043196 AAGTCCACAACTCCGTGGCACCTTGTTCTTTTT
1 AAGTCCACAACTCCGTGGCACC-----C-TTTT
4043229 AAGTCCACAACTCCGTGGCA-CC-TTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
4043254 AAGTCCA
1 AAGTCCA
4043261 ATATCGCTGG
Statistics
Matches: 58, Mismatches: 1, Indels: 14
0.79 0.01 0.19
Matches are distributed among these distances:
25 10 0.17
27 22 0.38
32 2 0.03
33 24 0.41
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.29
Consensus pattern (27 bp):
AAGTCCACAACTCCGTGGCACCCTTTT
Found at i:4043233 original size:60 final size:60
Alignment explanation
Indices: 4043036--4043250 Score: 229
Period size: 60 Copynumber: 3.4 Consensus size: 60
4043026 TGTGGTACCC
* *
4043036 TTTTAAGTCCACGACTCCGTGGCACCCTTTTAAAGCCCACAACTCCGTGGTACCTTTTTCT
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGCCCACAACTCCGTGGCACC-TTTTCT
* * * *
4043097 TTTCAAAG-CCTACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCATAACTCCATGGCACATTT
1 TTT-TAAGTCC-ACAACTCCGTGGCACC-----CTTTT-AAAGCCCACAACTCCGTGGCACCTTT
4043161 T-T
58 TCT
* *
4043163 TTTTCAAAGTCCACAACTCTGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCTTGTTCT
1 TTTT--AAGTCCACAACTCCGTGGCACCCTTTTAAAGCCCACAACTCCGTGGCACCTT-TTCT
4043225 TTTTAAGTCCACAACTCCGTGGCACC
1 TTTTAAGTCCACAACTCCGTGGCACC
4043251 TTTAAGTCCA
Statistics
Matches: 128, Mismatches: 13, Indels: 27
0.76 0.08 0.16
Matches are distributed among these distances:
60 41 0.32
61 7 0.05
62 28 0.22
66 4 0.03
67 27 0.21
68 21 0.16
ACGTcount: A:0.22, C:0.32, G:0.13, T:0.33
Consensus pattern (60 bp):
TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGCCCACAACTCCGTGGCACCTTTTCT
Found at i:4043320 original size:49 final size:49
Alignment explanation
Indices: 4043248--4044988 Score: 1122
Period size: 49 Copynumber: 36.8 Consensus size: 49
4043238 ACTCCGTGGC
*
4043248 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
*
4043297 ACCTTTAAGTCCAATATCGCTGGCCTTGAATTAGCACATTGGCACCTTT
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
** * * *
4043346 GTCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGG---C---
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* *
4043389 ACCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTAGCA-----
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * *
4043433 A-TTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTCTT
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCT-TT
*
4043482 -CCATCTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 ACC-T-TTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* **
4043532 ATCTTTAAAACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
** * *
4043581 GTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG---C---
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* *
4043624 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTT
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
*
4043673 ACCATCTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 ACC-T-TTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
** * * *
4043724 ATTTTTAAGACCAATGTCGCCGGCCTTGAATCAGCACATTGGCACCTTT
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
** * * *
4043773 GTCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACATTGG---C---
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* *
4043816 ACCTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* *
4043865 ACCATCTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTT
1 ACC-T-TTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * *
4043916 ATCTTTAAGACCAATGTCGCTGGCTTTGAATCAGCACATTGG---C---
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * *
4043959 A----TAAGACCGATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGT
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT-T
* *
4044005 --CTCTAAGACCAA-AGTCGCTGGCCTTGAATCAGCACATT-G-A-C---
1 ACCTTTAAGTCCAATA-TCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* *
4044046 A----TGAGCCCAATATCGCTGGCCTTGAATCAGCACATTGG---C---
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * * *
4044085 A----TGAGCCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTC
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * * * * * * **
4044130 ATCATGAAGACCGATGTCGTTGGCCTTGAATCAGCACATCGGCACCTCA
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * *
4044179 ACCATCTGTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACGTCT
1 ACC-T-T-TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * *** * * *
4044231 ATCTTTAAGTCCAATGTCGCCAACCTTGAATCAGCATATTGGCATCTTC
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * * * *
4044280 ATCTTTAAGTCCGATATCGTTGGCCTTGAATTAGCATATTGGCATCTTT
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * *
4044329 AAAATTCC-TTAA-CCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTCT
1 ---A--CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTT-T
* * * * * * * * *
4044383 CATCTTCAAGTCTAATGTCGCTGACCGTGAATCAACACATTGACATTCTTT
1 -ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTTT
* *
4044434 ACATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCACCTTT
1 AC--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * *
4044485 ATCTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGG---C---
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* *
4044528 A-C---AAGGCCAATATTGCTGGCCTTGAATCAGCACATTGG---C---
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * *
4044567 A----TAAGCCCAATATCACTGGCCGTGAATCAGCATATTGGCACCTTGT
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT-T
* *
4044613 --CTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGG---C---
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * * * *
4044654 A-C---GAGCCCAATATCGCTGGCCTTGAATCAACATATTGACACCTTC
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * ** * * * * * **
4044699 ATCTTAAAGAT-TGATGTTGTTGGTCTTGAATCAGCACATCGGCACCTCA
1 ACCTTTAAG-TCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * *
4044748 ACCATCTTTAAGTCCAATGTCGTTAGCCTTGAATCAGCATATTGGCACCTTT
1 A-C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * * * * *
4044800 ATCTTCAAGTCTAGTGTCGCTCGCCTTGAATCAGCACATTAGCA-CTTT
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * * *
4044848 CATCC-TTAAGTCCGATATCGTTGGCTTTGAATCAGCATATTGGCATCTTT
1 -A-CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
* * * **
4044898 AACATTCCTAAGCCCAATGTCGCTGGCCTTGTCTCAGCACATTGGCA--TTCT
1 -ACCTT--TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT-T
* * * * *
4044949 -TCTTCAAGTCTAATGTCGCTGGCCATGAATCAGCACATTG
1 ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTG
4044989 TCATTCTTCG
Statistics
Matches: 1375, Mismatches: 217, Indels: 202
0.77 0.12 0.11
Matches are distributed among these distances:
39 198 0.14
40 2 0.00
42 6 0.00
43 147 0.11
44 1 0.00
45 4 0.00
46 9 0.01
47 32 0.02
48 67 0.05
49 530 0.39
50 20 0.01
51 146 0.11
52 203 0.15
53 8 0.01
54 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
ACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTT
Found at i:4043663 original size:192 final size:189
Alignment explanation
Indices: 4043244--4044988 Score: 1406
Period size: 192 Copynumber: 9.2 Consensus size: 189
4043234 CACAACTCCG
*
4043244 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-ACCTTTAAGTC
1 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATC-TTAAGTC
* * * * *
4043308 CAATATCGCTGGCCTTGAATTAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCGCTAGCCTT
65 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTT
*
4043373 GAATCAGCACATTGGCA-C----CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAT
130 GAATCAGCACATTGGCACCTTTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
* ** *
4043428 TAGCAATTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTCTTCCATCTTAAGT
1 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT-TT-CATCTTAAGT
*
4043493 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAAACCAATATCGCTGGCCT
64 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCT
4043558 TGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
129 TGAATCAGCACATTGGCACCTTT-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
*
4043620 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTTACCATCTTAAGT
1 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT--CATCTTAAGT
* * *
4043685 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATTTTTAAGACCAATGTCGCCGGCCT
64 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCT
*
4043750 TGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACAT
129 TGAATCAGCACATTGGCACCTTT-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
*
4043812 TGGCACCTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCATCTTAAGT
1 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT--CATCTTAAGT
* * *
4043877 CCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCTT
64 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCT
* * * *
4043942 TGAATCAGCACATTGGCA---------TAAGACCGATATCGTTGGCCTTGAATCAGCATAT
129 TGAATCAGCACATTGGCACCTTTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
* *
4043994 TGGCACCTTGTCTCTAAGACCAA-AGTCGCTGGCCTTGAATCAGCACATT-G-A-----CA---T
1 TGGCACC---T-T-TAAGTCCAATA-TCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTT
* * * * * *
4044048 GAGCCCAATATCGCTGGCCTTGAATCAGCACATTGG---C---A----TGAGCCCAATATCGTTG
60 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCGCTG
* * * * * *
4044103 GCCTTGAATCAGCATATTGGCACCTTCATCATGAAGACCGATGTCGTTGGCCTTGAATCAGCACA
125 GCCTTGAATCAGCACATTGGCACCTT-TTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACA
4044168 T
189 T
* * * *
4044169 CGGCACCTCAACCATCTGTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACGTCT-AT
1 TGG-----C-ACC-T-T-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCAT
* *** * * * *
4044233 CTTTAAGTCCAATGTCGCCAACCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCGATATC
57 C-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATC
* * * * * * *
4044298 GTTGGCCTTGAATTAGCATATTGGCATCTTTAAAATTCCTTAA-CCCAATGTCGTTGGCCTTGAA
121 GCTGGCCTTGAATCAGCACATTGGCA-CCTT----TTCTTTAAGACCAATGTCGCTGGCCTTGAA
4044362 TCAGCACAT
181 TCAGCACAT
* * * * * * * *
4044371 TGGCATTCTTCTCATCTTCAAGTCTAATGTCGCTGACCGTGAATCAACACATTGACATTCTTTAC
1 TGGCA-----C-C-T-TT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CCTTT-C
* *
4044436 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCACCTTTATCTTTAAGACCAATG
55 ATC-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATA
* * * *
4044501 TTGCTGGCCTTGAATCAGCACATTGGCA------C---AAGGCCAATATTGCTGGCCTTGAATCA
119 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTTTAAGACCAATGTCGCTGGCCTTGAATCA
4044557 GCACAT
184 GCACAT
* * * *
4044563 TGGCA----TAAGCCCAATATCACTGGCCGTGAATCAGCATATTGGCACCTTGTC-T-TTAAGCC
1 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TCATCTTAAGTC
* * * *
4044622 CAATGTCGCTGGCCTTGAATCAGCACATTGG---C---A-C---GAGCCCAATATCGCTGGCCTT
65 CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTT
* * * * * *** * * *
4044677 GAATCAACATATTGACACCTTCATCTTAAAGATTGATGTTGTTGGTCTTGAATCAGCACAT
130 GAATCAGCACATTGGCACCTT-TTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
* * * *
4044738 CGGCACCTCAACCATCTTTAAGTCCAATGTCGTTAGCCTTGAATCAGCATATTGGCACCTTT-AT
1 TGG-----C-A-C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCAT
* * * * * * * * *
4044802 CTTCAAGTCTAGTGTCGCTCGCCTTGAATCAGCACATTAGCA-CTTTCATCCTTAAGTCCGATAT
57 CTT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-ATCTTTAAGACCAATAT
* * * * * * **
4044866 CGTTGGCTTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATGTCGCTGGCCTTGTC
120 CGCTGGCCTTGAATCAGCACATTGGCACCTTT-TC-TT--TAAGACCAATGTCGCTGGCCTTGAA
4044931 TCAGCACAT
181 TCAGCACAT
* * * * *
4044940 TGGCATTCTTCTTCAAGTCTAATGTCGCTGGCCATGAATCAGCACATTG
1 TGGCA--C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
4044989 TCATTCTTCG
Statistics
Matches: 1281, Mismatches: 169, Indels: 209
0.77 0.10 0.13
Matches are distributed among these distances:
165 64 0.05
168 1 0.00
169 2 0.00
172 3 0.00
175 128 0.10
177 1 0.00
178 6 0.00
179 65 0.05
180 4 0.00
181 5 0.00
182 36 0.03
184 47 0.04
185 5 0.00
186 86 0.07
187 35 0.03
188 39 0.03
189 61 0.05
191 5 0.00
192 389 0.30
194 1 0.00
195 2 0.00
196 3 0.00
197 37 0.03
199 70 0.05
200 5 0.00
201 2 0.00
202 93 0.07
203 7 0.01
205 79 0.06
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (189 bp):
TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATCTTAAGTCC
AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCGCTGGCCTTG
AATCAGCACATTGGCACCTTTTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACAT
Found at i:4043667 original size:235 final size:233
Alignment explanation
Indices: 4043252--4044655 Score: 1211
Period size: 235 Copynumber: 6.0 Consensus size: 233
4043242 CGTGGCACCT
* *
4043252 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCTTTAAGTCCAATATCGC
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCGC
* * *
4043317 TGGCCTTGAATTAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCGCTAGCCTTGAATCAGCA
66 TGGCCTTGAATCAGCACATTGGCA-C-TTG-CTTTAAGACCAATATCGCTGGCCTTGAATCAGCA
* * *
4043382 CATTGGCACCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTAGCA-AT-TTTAAGTCCA
128 CATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATCTTTAAGTCCA
* * *
4043445 ATATCACTGGCCTTGAATCAGCATATTGGCACCTCTTCCATC
193 ATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTT-CATC
*
4043487 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAAACCAATATCGC
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCGC
*
4043552 TGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCA
66 TGGCCTTGAATCAGCACATTGGCA-C-TTG-CTTTAAGACCAATATCGCTGGCCTTGAATCAGCA
* *
4043617 CATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTTACCATCTTA
128 CATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C---ATC-T-TTA
* * *
4043682 AGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT-TT-ATTT
187 AGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTTCA-TC
* * * * * * *
4043728 TTAAGACCAATGTCGCCGGCCTTGAATCAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCAC
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCGC
* * *
4043793 TGGCCTTGAATCAGCACATTGGCAC---CTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATAT
66 TGGCCTTGAATCAGCACATTGGCACTTGCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
*
4043855 TGGCACCTTTACCATCTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTTATCT
131 TGG---C---ACC-T-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C---ATCT
* *
4043920 TTAAGACCAATGTCGCTGGCTTTGAATCAGCACATTGG--------CA--
184 TTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTCTTCATC
* * * * *
4043960 -TAAGACCGATATCGTTGGCCTTGAATCAGCATATTGGCACC-TTGTCTCTAAGACCAA-AGTCG
1 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATA-TCG
* *
4044022 CTGGCCTTGAATCAGCACATT-G-ACATG-----AGCCCAATATCGCTGGCCTTGAATCAGCACA
65 CTGGCCTTGAATCAGCACATTGGCACTTGCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACA
* * * * * *
4044080 TTGGCA----TGAGCCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCATCATGAAGAC
130 TTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA----CATCTTTAAGTC
* * * **
4044141 CGATGTCGTTGGCCTTGAATCAGCACATCGGCACCTCAACCATC
191 CAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTC-TTCATC
* * * * *
4044185 TGTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACGTCTATCTTTAAGTCCAATGTCG
1 T-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCG
*** * * * * * *
4044250 CCAACCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCGATATCGTTGGCCTTGAATTAGC
65 CTGGCCTTGAATCAGCACATTGGCA-CTT--GCTTTAAGACCAATATCGCTGGCCTTGAATCAGC
* * * * * *
4044315 ATATTGGCATCTTTAAAATTCCTTAACCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCT
127 ACATTGGCACCTTT--AA----GT---CCAATATCGCTGGCCTTGAATCAGCATATTGGCA----
* * * * * * *
4044380 TCTCATCTTCAAGTCTAATGTCGCTGACCGTGAATCAACACATTGACA-TTCTTTACATC
179 ---CATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTC-TT-CATC
* * *
4044439 TTTAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCACCTTTATCTTTAAGACCAATGTTG
1 -TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCG
* *
4044504 CTGGCCTTGAATCAGCACATTGGCA----C---AAGGCCAATATTGCTGGCCTTGAATCAGCACA
65 CTGGCCTTGAATCAGCACATTGGCACTTGCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACA
* * * * *
4044562 TTGGCA----TAAGCCCAATATCACTGGCCGTGAATCAGCATATTGGCACCTTGTCTTTAAGCCC
130 TTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C--ATCTTTAAGTCC
4044623 AATGTCGCTGGCCTTGAATCAGCACATTGGCAC
192 AATGTCGCTGGCCTTGAATCAGCACATTGGCAC
4044656 GAGCCCAATA
Statistics
Matches: 971, Mismatches: 127, Indels: 149
0.78 0.10 0.12
Matches are distributed among these distances:
214 71 0.07
217 1 0.00
220 1 0.00
223 3 0.00
225 1 0.00
226 32 0.03
227 72 0.07
228 34 0.04
229 2 0.00
230 39 0.04
231 67 0.07
235 211 0.22
238 35 0.04
240 4 0.00
241 119 0.12
242 6 0.01
243 87 0.09
244 33 0.03
247 1 0.00
251 32 0.03
253 2 0.00
254 117 0.12
255 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (233 bp):
TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATATCGC
TGGCCTTGAATCAGCACATTGGCACTTGCTTTAAGACCAATATCGCTGGCCTTGAATCAGCACAT
TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATCTTTAAGTCCAATG
TCGCTGGCCTTGAATCAGCACATTGGCACCTCTTCATC
Found at i:4043984 original size:39 final size:39
Alignment explanation
Indices: 4043921--4044124 Score: 203
Period size: 39 Copynumber: 5.0 Consensus size: 39
4043911 CCTTTATCTT
* *
4043921 TAAGACCAATGTCGCTGGCTTTGAATCAGCACATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
4043960 TAAGACCGATATCGTTGGCCTTGAATCAGCATATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
*
4043999 CCTTGTCTCTAAGACCAA-AGTCGCTGGCCTTGAATCAGCACATTGACA
1 ---------TAAGACCAATA-TCGCTGGCCTTGAATCAGCACATTGGCA
* *
4044047 TGAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * * *
4044086 TGAGCCCAATATCGTTGGCCTTGAATCAGCATATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
4044125 CCTTCATCAT
Statistics
Matches: 140, Mismatches: 14, Indels: 22
0.80 0.08 0.12
Matches are distributed among these distances:
39 105 0.75
40 1 0.01
47 1 0.01
48 33 0.24
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.26
Consensus pattern (39 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
Found at i:4044042 original size:87 final size:88
Alignment explanation
Indices: 4043872--4044085 Score: 313
Period size: 87 Copynumber: 2.4 Consensus size: 88
4043862 TTTACCATCT
* * * *
4043872 TAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTCTAAGACCAAAGTCGCT
* *
4043937 GGCTTTGAATCAGCACATTGGCA
66 GGCCTTGAATCAGCACATTGACA
* * *
4043960 TAAGACCGATATCGTTGGCCTTGAATCAGCATATTGGCACC-TTGTCTCTAAGACCAAAGTCGCT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTCTAAGACCAAAGTCGCT
4044024 GGCCTTGAATCAGCACATTGACA
66 GGCCTTGAATCAGCACATTGACA
* * *
4044047 TGAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA
4044086 TGAGCCCAAT
Statistics
Matches: 112, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
87 75 0.67
88 37 0.33
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (88 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTCTAAGACCAAAGTCGCT
GGCCTTGAATCAGCACATTGACA
Found at i:4044266 original size:101 final size:98
Alignment explanation
Indices: 4044091--4044323 Score: 261
Period size: 101 Copynumber: 2.3 Consensus size: 98
4044081 TGGCATGAGC
* ****
4044091 CCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCATCATGAAGACCGATGTCGTTGGCCT
1 CCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCATCATGAAGACCAATGTCGCCAACCT
4044156 TGAATCAGCACATCGGCACCTCAACCATCTGTAAGT
66 TGAATCAGCACATCGGCA--TC-ACCATCTGTAAGT
* * * * * *
4044192 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCA-CGTCTATCTTTAAGTCCAATGTCGCCAACC
1 CCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTC-ATCATGAAGACCAATGTCGCCAACC
* * ** *
4044256 TTGAATCAGCATATTGGCATCTTCATCTTTAAGT
65 TTGAATCAGCACATCGGCATCACCATCTGTAAGT
* *
4044290 CCGATATCGTTGGCCTTGAATTAGCATATTGGCA
1 CCAATATCGTTGGCCTTGAATCAGCATATTGGCA
4044324 TCTTTAAAAT
Statistics
Matches: 111, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
98 40 0.36
99 2 0.02
100 3 0.03
101 66 0.59
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (98 bp):
CCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCATCATGAAGACCAATGTCGCCAACCT
TGAATCAGCACATCGGCATCACCATCTGTAAGT
Found at i:4044549 original size:39 final size:39
Alignment explanation
Indices: 4044503--4044682 Score: 207
Period size: 39 Copynumber: 4.4 Consensus size: 39
4044493 GACCAATGTT
* *
4044503 GCTGGCCTTGAATCAGCACATTGGCACAAGGCCAATATT
1 GCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATC
*
4044542 GCTGGCCTTGAATCAGCACATTGGCATAAGCCCAATATC
1 GCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATC
* * * *
4044581 ACTGGCCGTGAATCAGCATATTGGCACCTTGTCTTTAAGCCCAATGTC
1 GCTGGCCTTGAATCAGCACATTGGCA------C---AAGCCCAATATC
*
4044629 GCTGGCCTTGAATCAGCACATTGGCACGAGCCCAATATC
1 GCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATC
4044668 GCTGGCCTTGAATCA
1 GCTGGCCTTGAATCA
4044683 ACATATTGAC
Statistics
Matches: 119, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
39 84 0.71
42 1 0.01
48 34 0.29
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
GCTGGCCTTGAATCAGCACATTGGCACAAGCCCAATATC
Found at i:4044567 original size:569 final size:560
Alignment explanation
Indices: 4043254--4044996 Score: 1923
Period size: 569 Copynumber: 3.1 Consensus size: 560
4043244 TGGCACCTTT
* * * * * *
4043254 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CCTTTA-C--CTTTAAGTCCAATATC
1 AAGTCTAATGTCGCTGGCCATGAATCAGCACATTGACATTCTTTACCATCTTTAAGTCCAATATC
* * * *
4043315 GCTGGCCTTGAATTAGCACATTGGCACCTTTGTCTTTAAGACCAATGTCGCTAGCCTTGAATCAG
66 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAG
* * * *
4043380 CACATTGGCACCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTAGCAATTTTAAGTCCA
131 CACATTGGCA-C---AAGACCAATATCGCTGGCCTTGAATCAGCACATTGGC-ATTTTAAGACCA
* *
4043445 ATATCACTGGCCTTGAATCAGCATATTGGCACCTCTTCCATCTTAAGTCCAATATCGCTGGCCTT
191 ATATCACTGGCCTTGAATCAGCATATTGGCA------CCA---TGAGCCCAATATCGCTGGCCTT
* * * *
4043510 GAATCAGCATATTGGCACCTTTATCTTTAAAACCAATATCGCTGGCCTTGAATCAGCACATTGGC
247 GAATCAGCACATTGGCA---TGAGC-------CCAATATCGCTGGCCTTGAATCAGCATATTGGC
** * * * *
4043575 ACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG-----C-ACC-T-TTAA
302 ACCTTCATCTTAAAGACCGATGTCGTTGGCCTTGAATCAGCACATCGGCACCTCAACCATCTTAA
* * * * *
4043632 GTCCAATATCGCTGGCCTTGAATCAGCATATTAGCACCTTTACCATCTTAAGTCCAATATCGCTG
367 GTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC-T-TTAAGTCCAATGTCGC-C
* * * * * ** *
4043697 GCCTTGAATCAGCATATTGGCACCTTTATTTTTAAGACCAATGTCGCCGGCCTTGAATCAGCACA
429 GCCTTGAATCAGCATATTGGCA-CTTCATCTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATA
* * * * *
4043762 TTGGCACCTTT---GTCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCA--C-CT-
493 TTGGCATCTTTAAATTCCTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTCTC
4043820 TT-
558 TTC
* * * * *
4043822 AAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCA-CCTTTACCATC-TTAAGTCCAATATC
1 AAGTCTAATGTCGCTGGCCATGAATCAGCACATTGACATTCTTTACCATCTTTAAGTCCAATATC
* *
4043885 ACTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCTTTGAATCAG
66 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAG
* * * *
4043950 CACATTGGCATAAGACCGATATCGTTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACC
131 CACATTGGCACAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA---T-T-T-TAAGACC
* *
4044015 AA-AGTCGCTGGCCTTGAATCAGCACATT-G-A-CATGAGCCCAATATCGCTGGCCTTGAATCAG
190 AATA-TCACTGGCCTTGAATCAGCATATTGGCACCATGAGCCCAATATCGCTGGCCTTGAATCAG
* * *
4044076 CACATTGGCATGAGCCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCTTCATCATGAAGAC
254 CACATTGGCATGAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTAAAGAC
4044141 CGATGTCGTTGGCCTTGAATCAGCACATCGGCACCTCAACCATCTGTAAGTCCAATGTCGCTGGC
319 CGATGTCGTTGGCCTTGAATCAGCACATCGGCACCTCAACCATCT-TAAGTCCAATGTCGCTGGC
* * *
4044206 CTTGAATCAGCATATTGGCACGTCTATCTTTAAGTCCAATGTCGCCAACCTTGAATCAGCATATT
383 CTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTCGCC-GCCTTGAATCAGCATATT
*
4044271 GGCATCTTCATCTTTAAGTCCGATATCGTTGGCCTTGAATTAGCATATTGGCATCTTTAAAATTC
447 GGCA-CTTCATCTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCATCTTT-AAATTC
*
4044336 CTTAA-CCCAATGTCGTTGGCCTTGAATCAGCACATTGGCATTCTTCTCATCTTC
510 CTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA---TTCTC-TCTTC
* * *
4044390 AAGTCTAATGTCGCTGACCGTGAATCAACACATTGACATTCTTTA-CATCTTTAAGTCCAATATC
1 AAGTCTAATGTCGCTGGCCATGAATCAGCACATTGACATTCTTTACCATCTTTAAGTCCAATATC
* *
4044454 GCTGGCCTTGAATCAGTATATTGGCACCTTTATCTTTAAGACCAATGTTGCTGGCCTTGAATCAG
66 GCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAG
* * *
4044519 CACATTGGCACAAGGCCAATATTGCTGGCCTTGAATCAGCACATTGGCA---TAAGCCCAATATC
131 CACATTGGCACAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCATTTTAAGACCAATATC
* * *
4044581 ACTGGCCGTGAATCAGCATATTGGCACCTTGTCTTTAAGCCCAATGTCGCTGGCCTTGAATCAGC
196 ACTGGCCTTGAATCAGCATATTGGCACCATG------AGCCCAATATCGCTGGCCTTGAATCAGC
* * * **
4044646 ACATTGGCACGAGCCCAATATCGCTGGCCTTGAATCAACATATTGACACCTTCATCTTAAAGATT
255 ACATTGGCATGAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTAAAGACC
* * * *
4044711 GATGTTGTTGGTCTTGAATCAGCACATCGGCACCTCAACCATCTTTAAGTCCAATGTCGTTAGCC
320 GATGTCGTTGGCCTTGAATCAGCACATCGGCACCTCAACCATC-TTAAGTCCAATGTCGCTGGCC
* * * * *
4044776 TTGAATCAGCATATTGGCACCTTTATCTTCAAGTCTAGTGTCGCTCGCCTTGAATCAGCACATTA
384 TTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTCGC-CGCCTTGAATCAGCATATTG
* *
4044841 GCACTTTCATCCTTAAGTCCGATATCGTTGGCTTTGAATCAGCATATTGGCATCTTTAACATTCC
448 GCAC-TTCATCTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCATCTTTAA-ATTCC
**
4044906 -TAAGCCCAATGTCGCTGGCCTTGTCTCAGCACATTGGCATTCT-TCTTC
511 TTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCATTCTCTCTTC
*
4044954 AAGTCTAATGTCGCTGGCCATGAATCAGCACATTGTCATTCTT
1 AAGTCTAATGTCGCTGGCCATGAATCAGCACATTGACATTCTT
4044997 CGTATCTTCG
Statistics
Matches: 1017, Mismatches: 108, Indels: 104
0.83 0.09 0.08
Matches are distributed among these distances:
549 72 0.07
554 1 0.00
555 3 0.00
556 83 0.08
557 2 0.00
558 42 0.04
559 68 0.07
560 35 0.03
561 2 0.00
562 3 0.00
563 3 0.00
564 45 0.04
565 2 0.00
566 36 0.04
567 2 0.00
568 86 0.08
569 413 0.41
570 88 0.09
571 31 0.03
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (560 bp):
AAGTCTAATGTCGCTGGCCATGAATCAGCACATTGACATTCTTTACCATCTTTAAGTCCAATATC
GCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGGCCTTGAATCAG
CACATTGGCACAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCATTTTAAGACCAATATC
ACTGGCCTTGAATCAGCATATTGGCACCATGAGCCCAATATCGCTGGCCTTGAATCAGCACATTG
GCATGAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTAAAGACCGATGTC
GTTGGCCTTGAATCAGCACATCGGCACCTCAACCATCTTAAGTCCAATGTCGCTGGCCTTGAATC
AGCATATTGGCACCTTTATCTTTAAGTCCAATGTCGCCGCCTTGAATCAGCATATTGGCACTTCA
TCTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCATCTTTAAATTCCTTAAGCCCAA
TGTCGCTGGCCTTGAATCAGCACATTGGCATTCTCTCTTC
Found at i:4044672 original size:126 final size:127
Alignment explanation
Indices: 4044441--4044682 Score: 387
Period size: 126 Copynumber: 1.9 Consensus size: 127
4044431 TTTACATCTT
* * * * *
4044441 TAAGTCCAATATCGCTGGCCTTGAATCAGTATATTGGCACCTTTATCTTTAAGACCAATGTTGCT
1 TAAGCCCAATATCACTGGCCGTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCT
* *
4044506 GGCCTTGAATCAGCACATTGGCACAAGGCCAATATTGCTGGCCTTGAATCAGCACATTGGCA
66 GGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
4044568 TAAGCCCAATATCACTGGCCGTGAATCAGCATATTGGCACC-TTGTCTTTAAGCCCAATGTCGCT
1 TAAGCCCAATATCACTGGCCGTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCT
*
4044632 GGCCTTGAATCAGCACATTGGCACGAGCCCAATATCGCTGGCCTTGAATCA
66 GGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCA
4044683 ACATATTGAC
Statistics
Matches: 105, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
126 68 0.65
127 37 0.35
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (127 bp):
TAAGCCCAATATCACTGGCCGTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCT
GGCCTTGAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCA
Found at i:4045457 original size:33 final size:33
Alignment explanation
Indices: 4045420--4045486 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
4045410 TTCAACGATT
4045420 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
4045453 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
4045486 T
1 T
4045487 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:4045458 original size:13 final size:13
Alignment explanation
Indices: 4045440--4045464 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4045430 CATAAAATGT
4045440 TGTATCGATACAA
1 TGTATCGATACAA
4045453 TGTATCGATACA
1 TGTATCGATACA
4045465 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4045548 original size:13 final size:13
Alignment explanation
Indices: 4045530--4045554 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4045520 ATTACTCACA
4045530 TGTATCGATACAT
1 TGTATCGATACAT
4045543 TGTATCGATACA
1 TGTATCGATACA
4045555 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4045619 original size:52 final size:52
Alignment explanation
Indices: 4045563--4045683 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
4045553 CACTGATCTT
*
4045563 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
4045615 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
4045667 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
4045684 TAACTCTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:4051171 original size:21 final size:20
Alignment explanation
Indices: 4051133--4051171 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
4051123 ATTTCATGTT
4051133 TAAAAATTATTTTAAAATAC
1 TAAAAATTATTTTAAAATAC
4051153 TAAAAGATT-TTTATAAAAT
1 TAAAA-ATTATTT-TAAAAT
4051172 TTTTTAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (20 bp):
TAAAAATTATTTTAAAATAC
Found at i:4054057 original size:18 final size:18
Alignment explanation
Indices: 4054034--4054070 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
4054024 TTTATTACAT
4054034 TGGTTTCATTCCAAAACA
1 TGGTTTCATTCCAAAACA
4054052 TGGTTTCATTCCAAAACA
1 TGGTTTCATTCCAAAACA
4054070 T
1 T
4054071 CCAAATTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (18 bp):
TGGTTTCATTCCAAAACA
Found at i:4056224 original size:19 final size:20
Alignment explanation
Indices: 4056181--4056231 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
4056171 CAAACCCAGA
*
4056181 TGTATCGATACATATTGCTT
1 TGTATCGATACATATTGCAT
*
4056201 TGTATCGATACAT-TTTCAT
1 TGTATCGATACATATTGCAT
4056220 TGTATCGATACA
1 TGTATCGATACA
4056232 CCATAAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATATTGCAT
Found at i:4057827 original size:2 final size:2
Alignment explanation
Indices: 4057820--4057853 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
4057810 TCCATACCCC
4057820 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4057854 CAGGGTGACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4058195 original size:21 final size:21
Alignment explanation
Indices: 4058169--4058212 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
4058159 ATTAAAAGTT
*
4058169 AAAATAAAAAATAAAATTTTA
1 AAAATAAAAAATAAAATTATA
* *
4058190 AAAATAATAAATAATATTATA
1 AAAATAAAAAATAAAATTATA
4058211 AA
1 AA
4058213 TATATACATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (21 bp):
AAAATAAAAAATAAAATTATA
Found at i:4058255 original size:17 final size:18
Alignment explanation
Indices: 4058224--4058269 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
4058214 ATATACATTT
4058224 TTTATTTTT-TAAAT-AA
1 TTTATTTTTATAAATAAA
*
4058240 TTTATTTTTATTAATAAA
1 TTTATTTTTATAAATAAA
4058258 TTT-TTTTTATAA
1 TTTATTTTTATAA
4058270 GTATAAGCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 9 0.35
17 12 0.46
18 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTATTTTTATAAATAAA
Found at i:4064578 original size:28 final size:26
Alignment explanation
Indices: 4064514--4064582 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 26
4064504 TGTTTATATA
4064514 TATTTTAATATATTTTGTATTTATGT
1 TATTTTAATATATTTTGTATTTATGT
* * *
4064540 TATATTCATATTATTTT-TCATGTTATTT
1 TATTTTAATA-TATTTTGT-AT-TTATGT
*
4064568 TATTTTTATATATTT
1 TATTTTAATATATTT
4064583 AATTTATTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
26 9 0.26
27 13 0.37
28 13 0.37
ACGTcount: A:0.26, C:0.03, G:0.04, T:0.67
Consensus pattern (26 bp):
TATTTTAATATATTTTGTATTTATGT
Found at i:4064592 original size:16 final size:15
Alignment explanation
Indices: 4064566--4064603 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
4064556 TTCATGTTAT
4064566 TTTATTT-TTATATA
1 TTTATTTATTATATA
*
4064580 TTTAATTTATTATAAA
1 TTT-ATTTATTATATA
4064596 TTTATTTA
1 TTTATTTA
4064604 AATATTTACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 3 0.14
15 9 0.43
16 9 0.43
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTATTTATTATATA
Found at i:4065571 original size:29 final size:28
Alignment explanation
Indices: 4065538--4065601 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
4065528 CTTTATAATT
* * *
4065538 TTAAAGTTAAAAGTTTGTTTGAATATAAA
1 TTAAAATTAAAAGCTTATTTGAATAT-AA
* *
4065567 TTAAAATTTAAAGCTTATTTGAATGTAA
1 TTAAAATTAAAAGCTTATTTGAATATAA
4065595 TTAAAAT
1 TTAAAAT
4065602 AAATGAGCTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 9 0.30
29 21 0.70
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.42
Consensus pattern (28 bp):
TTAAAATTAAAAGCTTATTTGAATATAA
Found at i:4066237 original size:143 final size:145
Alignment explanation
Indices: 4065966--4066242 Score: 393
Period size: 143 Copynumber: 1.9 Consensus size: 145
4065956 TTTATTTATA
* * * * * *
4065966 TACATGTTAAATGTTTTAAATTTATCTTTAATCAATATATTAACTTTGAAAGGAATGTATTATAG
1 TACATGTTAAATATGTTAAACTTATCTTTAATCAATATATTAACTTTAAAAGAAATATATTATAG
* *
4066031 TTTTTATTTGAAATAAATTAATAAAATTATTTAAAATGTTTATTGATAAAAGAAATTGATTAAAA
66 TTTTTATTTGAAATAAATTAATAAAATTATTTAAAAAGTTTAATGATAAAAGAAATTGATTAAAA
4066096 TCAAATTTAATGCAAG
131 -CAAATTTAATGCAAG
* *
4066112 TACATGTTAAATATGTTAAACTTATTTTTAATCTAATATATTAACTTTAAAATAAATATATTAT-
1 TACATGTTAAATATGTTAAACTTATCTTTAATC-AATATATTAACTTTAAAAGAAATATATTATA
*
4066176 G-TTTT-TTT-AAATAAATTAATAAAATTATTTCAAAAAGTTTAATGAT-AAAGAAATTTATTAA
65 GTTTTTATTTGAAATAAATTAATAAAATTATTT-AAAAAGTTTAATGATAAAAGAAATTGATTAA
4066237 AACAAA
129 AACAAA
4066243 AACTGATAAA
Statistics
Matches: 118, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
142 4 0.03
143 38 0.32
144 16 0.14
145 4 0.03
146 30 0.25
147 26 0.22
ACGTcount: A:0.46, C:0.04, G:0.07, T:0.43
Consensus pattern (145 bp):
TACATGTTAAATATGTTAAACTTATCTTTAATCAATATATTAACTTTAAAAGAAATATATTATAG
TTTTTATTTGAAATAAATTAATAAAATTATTTAAAAAGTTTAATGATAAAAGAAATTGATTAAAA
CAAATTTAATGCAAG
Found at i:4066448 original size:2 final size:2
Alignment explanation
Indices: 4066443--4066474 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
4066433 TTTGTCTCCC
4066443 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4066475 TTGTTTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4067615 original size:25 final size:24
Alignment explanation
Indices: 4067561--4067623 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
4067551 AAAGGTTTTT
* * *
4067561 TTTAAAATA-AAAATAGTGATAAC
1 TTTAAAATATAAAATAATAATAAA
*
4067584 TTGAAAATATAAAATAATAATAAA
1 TTTAAAATATAAAATAATAATAAA
*
4067608 TATTAAAATTTAAAAT
1 T-TTAAAATATAAAAT
4067624 TTAAAATTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
23 8 0.25
24 12 0.38
25 12 0.38
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (24 bp):
TTTAAAATATAAAATAATAATAAA
Found at i:4067631 original size:7 final size:7
Alignment explanation
Indices: 4067605--4067670 Score: 57
Period size: 7 Copynumber: 9.3 Consensus size: 7
4067595 AAATAATAAT
4067605 AAATATTA
1 AAAT-TTA
4067613 AAATTTA
1 AAATTTA
4067620 AAATTTA
1 AAATTTA
4067627 AAATTGTTA
1 AAA-T-TTA
4067636 AAATTTA
1 AAATTTA
*
4067643 ATAAATT-
1 A-AATTTA
4067650 AAA-TTA
1 AAATTTA
*
4067656 AAATAT-
1 AAATTTA
4067662 AAATTTA
1 AAATTTA
4067669 AA
1 AA
4067671 TATATATATA
Statistics
Matches: 49, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
5 2 0.04
6 10 0.20
7 21 0.43
8 10 0.20
9 6 0.12
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (7 bp):
AAATTTA
Found at i:4067638 original size:16 final size:14
Alignment explanation
Indices: 4067605--4067670 Score: 57
Period size: 16 Copynumber: 4.6 Consensus size: 14
4067595 AAATAATAAT
4067605 AAATATTAAAATTTA
1 AAAT-TTAAAATTTA
4067620 AAATTTAAAATTGTTA
1 AAATTTAAAA-T-TTA
*
4067636 AAATTTAATAAATT-
1 AAATTTAA-AATTTA
*
4067650 AAA-TTAAAATAT-
1 AAATTTAAAATTTA
4067662 AAATTTAAA
1 AAATTTAAA
4067671 TATATATATA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
12 6 0.14
13 9 0.20
14 9 0.20
15 7 0.16
16 11 0.25
17 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (14 bp):
AAATTTAAAATTTA
Found at i:4067984 original size:20 final size:20
Alignment explanation
Indices: 4067936--4067984 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
4067926 GTTTAAAAAA
*
4067936 TTTTTAATTTATTTAATATT
1 TTTTTAATTTAATTAATATT
**
4067956 TTTAAAATTTAATTAATATT
1 TTTTTAATTTAATTAATATT
4067976 TTTTTAATT
1 TTTTTAATT
4067985 AAATCTAAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTTAATTTAATTAATATT
Found at i:4068506 original size:20 final size:20
Alignment explanation
Indices: 4068469--4068506 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4068459 TAAAAATAAG
*
4068469 AAAACAAAAATTATAAAGCC
1 AAAACAAAAATTAAAAAGCC
4068489 AAAA-AAAAAGTTAAAAAG
1 AAAACAAAAA-TTAAAAAG
4068507 TAGTTTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.71, C:0.08, G:0.08, T:0.13
Consensus pattern (20 bp):
AAAACAAAAATTAAAAAGCC
Found at i:4068634 original size:22 final size:23
Alignment explanation
Indices: 4068591--4068642 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
4068581 GTTTAGTTGA
**
4068591 AAAAATAAAAAAATTTTAAAAAT
1 AAAAATAAAAAAAGGTTAAAAAT
*
4068614 AAAAATAAAAACAGGTT-AAAAT
1 AAAAATAAAAAAAGGTTAAAAAT
*
4068636 CAAAATA
1 AAAAATA
4068643 TATAAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
22 11 0.44
23 14 0.56
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.21
Consensus pattern (23 bp):
AAAAATAAAAAAAGGTTAAAAAT
Found at i:4068879 original size:18 final size:18
Alignment explanation
Indices: 4068856--4068897 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
4068846 ATTAATCTTT
4068856 TTAAAAAGTAATAA-ATTA
1 TTAAAAA-TAATAATATTA
*
4068874 TTAAAAATAATAATATTT
1 TTAAAAATAATAATATTA
4068892 TTAAAA
1 TTAAAA
4068898 TATTTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
TTAAAAATAATAATATTA
Found at i:4068898 original size:17 final size:17
Alignment explanation
Indices: 4068848--4068899 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
4068838 AAATAAAAAT
*
4068848 TAATCTTTTTAAAAAGTAA
1 TAATATTTTT-AAAA-TAA
*
4068867 TAA-ATTATTAAAAATAA
1 TAATATT-TTTAAAATAA
4068884 TAATATTTTTAAAATA
1 TAATATTTTTAAAATA
4068900 TTTATAAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 14 0.50
18 9 0.32
19 5 0.18
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (17 bp):
TAATATTTTTAAAATAA
Found at i:4078683 original size:97 final size:96
Alignment explanation
Indices: 4078532--4078963 Score: 457
Period size: 97 Copynumber: 4.5 Consensus size: 96
4078522 TTTTTTATTG
* *
4078532 AAAAATGAGATTGGAGTAT-TCTCTCGGAGGAATGGGGTTGGAGTGTCTCCGATGATGATAATTT
1 AAAAATGAGGTTGGAGTATCTCT-TCGGAGGAATAGGGTTGGAGTGT-TCCGATGATGATAATTT
* * * *
4078596 AATTGAAAATAAGATTTAAATTTTGATAAGTTT
64 AAGTGAGAATAAGATTTAAACTTTGATTAGTTT
* *
4078629 AAAAATGAGGTTGGAGAATCTTTTCGGAGGAAT-GAGGTTGGAGTGTTCACGATGATGATAATTT
1 AAAAATGAGGTTGGAGTATCTCTTCGGAGGAATAG-GGTTGGAGTGTTC-CGATGATGATAATTT
*
4078693 AAGTGAGATTAAGATTTAAACTTTGATGTA-TTT
64 AAGTGAGAATAAGATTTAAACTTTGAT-TAGTTT
* * * * * *
4078726 AAAAACGGGGTTAGAGTATCCCTTCGGAGGAATAGGGTTGGAGTGTTTTCAATGATGATAATTTA
1 AAAAATGAGGTTGGAGTATCTCTTCGGAGGAATAGGGTTGGAGTG-TTCCGATGATGATAATTTA
* *
4078791 AGTGAGAATAAGATTTAAATTTTGATTTGTTT
65 AGTGAGAATAAGATTTAAACTTTGATTAGTTT
* * *
4078823 AAAAGT-AGGGTTGGAGTATC-CTTCGTAGGAATATGGTTGGAGTGTCTTCCGATGATGATAATT
1 AAAAATGA-GGTTGGAGTATCTCTTCGGAGGAATAGGGTTGGAGTG--TTCCGATGATGATAATT
*
4078886 TAAAG-GAGAATAAGATTTAAACTTTGATGT-GCTT
63 T-AAGTGAGAATAAGATTTAAACTTTGAT-TAGTTT
* ** * * *
4078920 AAAAGTG-GAGTTTAAGTATCTCCTCGGAGAAATAAGGTTGGAGT
1 AAAAATGAG-GTTGGAGTATCTCTTCGGAGGAATAGGGTTGGAGT
4078964 ATCTTCGATT
Statistics
Matches: 285, Mismatches: 36, Indels: 27
0.82 0.10 0.08
Matches are distributed among these distances:
96 27 0.09
97 229 0.80
98 29 0.10
ACGTcount: A:0.33, C:0.07, G:0.26, T:0.34
Consensus pattern (96 bp):
AAAAATGAGGTTGGAGTATCTCTTCGGAGGAATAGGGTTGGAGTGTTCCGATGATGATAATTTAA
GTGAGAATAAGATTTAAACTTTGATTAGTTT
Found at i:4078884 original size:194 final size:194
Alignment explanation
Indices: 4078546--4078963 Score: 528
Period size: 194 Copynumber: 2.2 Consensus size: 194
4078536 ATGAGATTGG
* * *
4078546 AGTAT-TCTCTCGGAGGAATGGGGTTGGAGTGTCTCCGATGATGATAATTTAATTGAAAATAAGA
1 AGTATCTC-CTCGGAGGAATAGGGTTGGAGTGTCTCCAATGATGATAATTTAAGTGAAAATAAGA
*
4078610 TTTAAATTTTGATAAGTTTAAAAATGAGGTTGGAGAATCTTTTCGGAGGAATGAGGTTGGAGTGT
65 TTTAAATTTTGATAAGTTTAAAAATGAGGTTGGAGAATCTCTTCGGAGGAATGAGGTTGGAGTGT
* *
4078675 TCACGATGATGATAATTT-AAGTGAGATTAAGATTTAAACTTTGATGTATTTAAAAACGG-GGTT
130 TCACGATGATGATAATTTAAAG-GAGAATAAGATTTAAACTTTGATGTACTTAAAAACGGAGGTT
4078738 A
194 A
* * *
4078739 GAGTATC-CCTTCGGAGGAATAGGGTTGGAGTGTTTTCAATGATGATAATTTAAGTGAGAATAAG
1 -AGTATCTCC-TCGGAGGAATAGGGTTGGAGTGTCTCCAATGATGATAATTTAAGTGAAAATAAG
** * * *
4078803 ATTTAAATTTTGATTTGTTTAAAAGT-AGGGTTGGAGTATC-CTTCGTAGGAAT-ATGGTTGGAG
64 ATTTAAATTTTGATAAGTTTAAAAATGA-GGTTGGAGAATCTCTTCGGAGGAATGA-GGTTGGAG
* **
4078865 TGTCTTC-CGATGATGATAATTTAAAGGAGAATAAGATTTAAACTTTGATGTGCTTAAAAGTGGA
127 TG--TTCACGATGATGATAATTTAAAGGAGAATAAGATTTAAACTTTGATGTACTTAAAAACGGA
*
4078929 GTTTA
190 GGTTA
* *
4078934 AGTATCTCCTCGGAGAAATAAGGTTGGAGT
1 AGTATCTCCTCGGAGGAATAGGGTTGGAGT
4078964 ATCTTCGATT
Statistics
Matches: 195, Mismatches: 20, Indels: 18
0.84 0.09 0.08
Matches are distributed among these distances:
192 1 0.01
193 22 0.11
194 160 0.82
195 12 0.06
ACGTcount: A:0.32, C:0.07, G:0.26, T:0.35
Consensus pattern (194 bp):
AGTATCTCCTCGGAGGAATAGGGTTGGAGTGTCTCCAATGATGATAATTTAAGTGAAAATAAGAT
TTAAATTTTGATAAGTTTAAAAATGAGGTTGGAGAATCTCTTCGGAGGAATGAGGTTGGAGTGTT
CACGATGATGATAATTTAAAGGAGAATAAGATTTAAACTTTGATGTACTTAAAAACGGAGGTTA
Found at i:4080921 original size:18 final size:18
Alignment explanation
Indices: 4080898--4080952 Score: 62
Period size: 16 Copynumber: 3.2 Consensus size: 18
4080888 TTTCATTTTC
4080898 ATTTTTTTTGAA-TATTTA
1 ATTTTTTTT-AATTATTTA
*
4080916 ATTTTTTTTAATTTTTTA
1 ATTTTTTTTAATTATTTA
*
4080934 A--TTTTTTAATTTTTTA
1 ATTTTTTTTAATTATTTA
4080950 ATT
1 ATT
4080953 GATTTTTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
16 16 0.48
17 2 0.06
18 15 0.45
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
ATTTTTTTTAATTATTTA
Found at i:4080922 original size:17 final size:18
Alignment explanation
Indices: 4080900--4080952 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 18
4080890 TCATTTTCAT
4080900 TTTTTTTGAA-TATTTAA
1 TTTTTTTGAATTATTTAA
* *
4080917 TTTTTTTTAATTTTTTAA
1 TTTTTTTGAATTATTTAA
*
4080935 -TTTTTT-AATTTTTTAA
1 TTTTTTTGAATTATTTAA
4080951 TT
1 TT
4080953 GATTTTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
16 10 0.31
17 16 0.50
18 6 0.19
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (18 bp):
TTTTTTTGAATTATTTAA
Found at i:4080932 original size:8 final size:8
Alignment explanation
Indices: 4080919--4080952 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
4080909 ATATTTAATT
4080919 TTTTTTAA
1 TTTTTTAA
4080927 TTTTTTAA
1 TTTTTTAA
4080935 TTTTTTAA
1 TTTTTTAA
4080943 TTTTTTAA
1 TTTTTTAA
4080951 TT
1 TT
4080953 GATTTTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTTAA
Found at i:4080965 original size:8 final size:8
Alignment explanation
Indices: 4080918--4080997 Score: 52
Period size: 8 Copynumber: 9.2 Consensus size: 8
4080908 AATATTTAAT
4080918 TTTTTTTAA
1 TTTTTTT-A
*
4080927 TTTTTTAA
1 TTTTTTTA
*
4080935 TTTTTTAA
1 TTTTTTTA
4080943 TTTTTTAATTGA
1 -TTTTT--TT-A
4080955 TTTTTTTA
1 TTTTTTTA
4080963 TTTTTTTCA
1 TTTTTTT-A
*
4080972 TTTTATTA
1 TTTTTTTA
*
4080980 TTATTTTA
1 TTTTTTTA
* *
4080988 ATTTTATA
1 TTTTTTTA
4080996 TT
1 TT
4080998 AAAAAAAGAA
Statistics
Matches: 57, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
8 30 0.53
9 20 0.35
11 6 0.11
12 1 0.02
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.75
Consensus pattern (8 bp):
TTTTTTTA
Found at i:4080969 original size:38 final size:38
Alignment explanation
Indices: 4080918--4080990 Score: 105
Period size: 37 Copynumber: 1.9 Consensus size: 38
4080908 AATATTTAAT
4080918 TTTTTTTAATTTTTTAATTTT-TTAATT-TTTTAATTGA
1 TTTTTTTAATTTTTTAATTTTATT-ATTATTTTAATTGA
* *
4080955 TTTTTTTATTTTTTTCATTTTATTATTATTTTAATT
1 TTTTTTTAATTTTTTAATTTTATTATTATTTTAATT
4080991 TTATATTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
37 22 0.69
38 10 0.31
ACGTcount: A:0.22, C:0.01, G:0.01, T:0.75
Consensus pattern (38 bp):
TTTTTTTAATTTTTTAATTTTATTATTATTTTAATTGA
Found at i:4080980 original size:17 final size:17
Alignment explanation
Indices: 4080954--4080998 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
4080944 TTTTTAATTG
* * *
4080954 ATTTTTTTATTTTTTTC
1 ATTTTATTATTATTTTA
4080971 ATTTTATTATTATTTTA
1 ATTTTATTATTATTTTA
4080988 ATTTTA-TATTA
1 ATTTTATTATTA
4080999 AAAAAAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
16 5 0.20
17 20 0.80
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (17 bp):
ATTTTATTATTATTTTA
Found at i:4080986 original size:28 final size:29
Alignment explanation
Indices: 4080912--4080975 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
4080902 TTTTTGAATA
*
4080912 TTTAATTTTTT--TT-AATTTTTTAATTT
1 TTTAATTTTTTAATTGATTTTTTTAATTT
*
4080938 TTTAATTTTTTAATTGATTTTTTTATTTT
1 TTTAATTTTTTAATTGATTTTTTTAATTT
*
4080967 TTTCATTTT
1 TTTAATTTT
4080976 ATTATTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 11 0.34
28 2 0.06
29 19 0.59
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (29 bp):
TTTAATTTTTTAATTGATTTTTTTAATTT
Found at i:4084193 original size:21 final size:21
Alignment explanation
Indices: 4084169--4084225 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
4084159 CACTATTGAT
*
4084169 TTTAATCTCCCCACTATAGTA
1 TTTAATCTCACCACTATAGTA
* * *
4084190 TTTAATTTCATCATTATAGTA
1 TTTAATCTCACCACTATAGTA
*
4084211 ATTAATCTCACCACT
1 TTTAATCTCACCACT
4084226 CTTGCTGTTT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.42
Consensus pattern (21 bp):
TTTAATCTCACCACTATAGTA
Found at i:4091132 original size:21 final size:21
Alignment explanation
Indices: 4091090--4091132 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
4091080 ATTAATTTTA
* **
4091090 ATTTTCTTTTAATTTTGGATT
1 ATTTTATTTTAATTTTAAATT
*
4091111 ATTTTATTTTATTTTTAAATT
1 ATTTTATTTTAATTTTAAATT
4091132 A
1 A
4091133 GTTTCATGGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.02, G:0.05, T:0.67
Consensus pattern (21 bp):
ATTTTATTTTAATTTTAAATT
Found at i:4092868 original size:156 final size:155
Alignment explanation
Indices: 4092598--4093133 Score: 566
Period size: 156 Copynumber: 3.4 Consensus size: 155
4092588 TAGTTACTGT
** * * * *
4092598 GATGCTTTTATGATAAAGGTGTTCATTTATGATAGGTTCACC-TTTTTGGATCATTTTCGAGTAT
1 GATGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTCACCTTTTTTTGATCATTTTCGAGTCT
** * * *
4092662 TTTAAAGTAACTGGGATACTTTCATG-CTAAAGTTATACCCTAAGGGCATTTTGATAATTTTCCT
66 TTTAGGGTAACTGAGATACTTTAATGTC-AAAGGTATACCCTAAGGGCATTTTGATAATTTTCCT
* * * *
4092726 AGAACCAAGTCCAATGTAGTCACCAA
130 AAAACCAAGTCCGATGTAGTCATCGA
* * * *
4092752 GATGCTTTTATGTCAAAGATGTGCATTTAGGATAGGTTTTACCTTTTTTTGATCATTTTTGAGTC
1 GATGCTTTTATGCCAAAGGTGTGCATTTAGGATAGG-TTCACCTTTTTTTGATCATTTTCGAGTC
* *
4092817 TTTTAGGGTAACTGAGATACTTTAATGTCAAAGGTATACCCTAAAGGCATTTTGATAATTTTCTT
65 TTTTAGGGTAACTGAGATACTTTAATGTCAAAGGTATACCCTAAGGGCATTTTGATAATTTTCCT
* *
4092882 AAAACCAAGTCCGTTGTAGTCATTGA
130 AAAACCAAGTCCGATGTAGTCATCGA
* * * *
4092908 GATGCATTTATGCCAAAGGTGTACATTAAGGATAGGTTCACCCCCTTTTTTTGATCATTTTCAAG
1 GATGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTCA---CCTTTTTTTGATCATTTTCGAG
* * * * **
4092973 TCCTTTAGGTTAA-TCAAGATACTTTCATAT-TGAAA-GTATACTTTAAGGGCATTTTGATAATT
63 TCTTTTAGGGTAACT-GAGATACTTT-A-ATGTCAAAGGTATACCCTAAGGGCATTTTGATAATT
*** * *
4093035 CTT-CTAAAATTGAGTCTGATGTAGTCATCGG
125 -TTCCTAAAACCAAGTCCGATGTAGTCATCGA
* *
4093066 GATGCTTTTATGCCAAAGGTTTGCATTTAGGATAGAGTT-A-CTTTTTTTGATCATTTTTGAGTC
1 GATGCTTTTATGCCAAAGGTGTGCATTTAGGATAG-GTTCACCTTTTTTTGATCATTTTCGAGTC
4093129 TTTTA
65 TTTTA
4093134 AGGTTACTAG
Statistics
Matches: 319, Mismatches: 52, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
154 56 0.18
155 8 0.03
156 125 0.39
157 2 0.01
158 116 0.36
159 10 0.03
160 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (155 bp):
GATGCTTTTATGCCAAAGGTGTGCATTTAGGATAGGTTCACCTTTTTTTGATCATTTTCGAGTCT
TTTAGGGTAACTGAGATACTTTAATGTCAAAGGTATACCCTAAGGGCATTTTGATAATTTTCCTA
AAACCAAGTCCGATGTAGTCATCGA
Found at i:4097343 original size:20 final size:20
Alignment explanation
Indices: 4097320--4097386 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
4097310 AGATGTATGA
*
4097320 ATACATTTTTCAGTGTATCG
1 ATACATTTTTCAATGTATCG
* * *
4097340 ATACATGTATGAATGTATCG
1 ATACATTTTTCAATGTATCG
*
4097360 ATACATTCTTCAATGTATCG
1 ATACATTTTTCAATGTATCG
4097380 ATACATT
1 ATACATT
4097387 CTGTCTTTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
ATACATTTTTCAATGTATCG
Found at i:4108417 original size:1 final size:1
Alignment explanation
Indices: 4108413--4108480 Score: 64
Period size: 1 Copynumber: 68.0 Consensus size: 1
4108403 AGTCAAAAGT
* * * * * * * *
4108413 AAAAACAAAAAAAAAACAAAAAAAAAAAAACAAAAACAAAAACAAAAACAAAAAAAACACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4108478 AAA
1 AAA
4108481 GTGTCAAGGC
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:4108422 original size:6 final size:6
Alignment explanation
Indices: 4108413--4108477 Score: 80
Period size: 6 Copynumber: 10.8 Consensus size: 6
4108403 AGTCAAAAGT
*
4108413 AAAAAC AAAAA- AAAAAC AAAAAAAA AAAAAC AAAAAC AAAAAC AAAAAC
1 AAAAAC AAAAAC AAAAAC --AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC
*
4108462 AAAAA- AAACAC AAAAA
1 AAAAAC AAAAAC AAAAA
4108478 AAAGTGTCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
5 9 0.18
6 37 0.73
8 5 0.10
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:4108429 original size:11 final size:11
Alignment explanation
Indices: 4108413--4108480 Score: 95
Period size: 11 Copynumber: 6.3 Consensus size: 11
4108403 AGTCAAAAGT
4108413 AAAAACAAAAA
1 AAAAACAAAAA
4108424 AAAAAC-AAAA
1 AAAAACAAAAA
*
4108434 AAAAA-AAAAC
1 AAAAACAAAAA
4108444 AAAAACAAAAA
1 AAAAACAAAAA
4108455 CAAAAACAAAAA
1 -AAAAACAAAAA
*
4108467 AAACACAAAAA
1 AAAAACAAAAA
4108478 AAA
1 AAA
4108481 GTGTCAAGGC
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
10 17 0.33
11 23 0.45
12 11 0.22
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAACAAAAA
Found at i:4108815 original size:13 final size:13
Alignment explanation
Indices: 4108797--4108821 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4108787 CCTAATCTTG
4108797 ATAAAAATAAAAA
1 ATAAAAATAAAAA
4108810 ATAAAAATAAAA
1 ATAAAAATAAAA
4108822 GAGAGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
ATAAAAATAAAAA
Found at i:4109835 original size:62 final size:61
Alignment explanation
Indices: 4109749--4110209 Score: 475
Period size: 62 Copynumber: 7.5 Consensus size: 61
4109739 TCTTCAAAAT
*
4109749 TCTCTTCTTAAAGTCCACGACTCAGTGGTAATCTCTTCTCAAAGTCCACGACTCAAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGG-AATCTCTTCTCAAAGTCCACGACTCAAGTGGCA
* *
4109811 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTTTTCTTCAAAGTCCACGACTCAA-TGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGAATC---TCTTC-TCAAAGTCCACGACTCAAGTGGCA
* * * * * *
4109875 TTTTTTCTTCAAAGTCCACAACTCAGTGGCATCTCTTTTCTAAGTCCACGACTC-AGTGGCA
1 TCTCTTC-TCAAAGTCCACGACTCAGTGGAATCTCTTCTCAAAGTCCACGACTCAAGTGGCA
* * * * * * * * *
4109936 TCCTTTTCTTCCAAGTCCATGACTCAATGGCATTTTTTTCTTCAAAGTCCACAACT-TAGTGGCA
1 T-CTCTTC-TCAAAGTCCACGACTCAGTGG-AATCTCTTC-TCAAAGTCCACGACTCAAGTGGCA
* ** * * *
4110000 TCTCTTTTTTAAGTCCACGACTTAGTGGCATATCTTCTCAAAGTCCACGACTCAA-TGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGAATCTCTTCTCAAAGTCCACGACTCAAGTGGCA
* * *
4110060 TCTTTTCTTCAAAGTCAACGACTCAGTGGCAATCTCTTCTCAAAGTCCATGACTC-AGTGGCA
1 TCTCTTC-TCAAAGTCCACGACTCAGTGG-AATCTCTTCTCAAAGTCCACGACTCAAGTGGCA
* * * *
4110122 TCTCTTCCCAAAGTCCATGACTCAGTGGAAACTCTTCTCAAAGTCCACGACTCGA-TGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGAATCTCTTCTCAAAGTCCACGACTCAAGTGGCA
* *
4110182 TCTCTTCCCAAAGTCCACGACTCTGTGG
1 TCTCTTCTCAAAGTCCACGACTCAGTGG
4110210 CACCTTTTTC
Statistics
Matches: 333, Mismatches: 51, Indels: 32
0.80 0.12 0.08
Matches are distributed among these distances:
60 79 0.24
61 67 0.20
62 102 0.31
63 8 0.02
64 35 0.11
65 42 0.13
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (61 bp):
TCTCTTCTCAAAGTCCACGACTCAGTGGAATCTCTTCTCAAAGTCCACGACTCAAGTGGCA
Found at i:4109840 original size:30 final size:30
Alignment explanation
Indices: 4109749--4110277 Score: 510
Period size: 30 Copynumber: 17.2 Consensus size: 30
4109739 TCTTCAAAAT
* *
4109749 TCTCTTCTTAAAGTCCACGACTCAGTGGTAA
1 TCTCTTCTCAAAGTCCACGACTCAGTGG-CA
4109780 TCTCTTCTCAAAGTCCACGACTCAAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTC-AGTGGCA
4109811 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* *
4109841 TCTTTTTTTCTTCAAAGTCCACGACTCAATGGCA
1 TC---TCTTC-TCAAAGTCCACGACTCAGTGGCA
* * *
4109875 TTTTTTCTTCAAAGTCCACAACTCAGTGGCA
1 TCTCTTC-TCAAAGTCCACGACTCAGTGGCA
* *
4109906 TCTCTTTTCTAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* * * *
4109936 TCCTTTTCTTCCAAGTCCATGACTCAATGGCA
1 T-CTCTTC-TCAAAGTCCACGACTCAGTGGCA
* * * *
4109968 TTTTTTTCTTCAAAGTCCACAACTTAGTGGCA
1 -TCTCTTC-TCAAAGTCCACGACTCAGTGGCA
* ** *
4110000 TCTCTTTTTTAAGTCCACGACTTAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* *
4110030 TATCTTCTCAAAGTCCACGACTCAATGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* *
4110060 TCTTTTCTTCAAAGTCAACGACTCAGTGGCAA
1 TCTCTTC-TCAAAGTCCACGACTCAGTGGC-A
*
4110092 TCTCTTCTCAAAGTCCATGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* * *
4110122 TCTCTTCCCAAAGTCCATGACTCAGTGGAA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
*
4110152 ACTCTTCTCAAAGTCCACGACTC-GATGGCA
1 TCTCTTCTCAAAGTCCACGACTCAG-TGGCA
* *
4110182 TCTCTTCCCAAAGTCCACGACTCTGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* * * *
4110212 CCTTTTTCTTTTCAAAGTCCACAACTCTGTGGCA
1 ----TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* * *
4110246 TC-CTT-T-TAAGTCCACAACTCCGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
4110273 -CTCTT
1 TCTCTT
4110278 TTTCCTTTAA
Statistics
Matches: 424, Mismatches: 57, Indels: 38
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.00
27 22 0.05
28 1 0.00
29 4 0.01
30 160 0.38
31 126 0.30
32 56 0.13
33 5 0.01
34 49 0.12
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (30 bp):
TCTCTTCTCAAAGTCCACGACTCAGTGGCA
Found at i:4110232 original size:216 final size:221
Alignment explanation
Indices: 4109747--4110246 Score: 562
Period size: 216 Copynumber: 2.3 Consensus size: 221
4109737 ATTCTTCAAA
* * * * * * *
4109747 ATTCTCTTCT-TAAAGTCCACGACTCAGTGGTA-ATC-TCTTCTCAAAGTCCACGACTCAAGTGG
1 ATTCTCTTCTCCAAAGTCCACAACTTAGTGGCACCTCTTCTTTTCAAAGTCCACGACTCTAGTGG
* * *
4109809 CATCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTTTTCTTCAAAGTCCACGACTCAATGGC
66 CATATCTTCTCAAAGTCCACGACTCAATGGCATC--TTTTTCTTCAAAGTCAACGACTCAATGGC
* * ** * **
4109874 ATTTTTTCTTCAAAGTCCACAACTCAGTGGCATCTCTTTTCTAAGTCCACGACTCAGTGGCATCC
129 ATCTCTTCTTCAAAGTCCACAACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCAAAC
* * *
4109939 TTTTCTTCCAAGTCCATGACTCAATGGC
194 TCTTCTTCAAAGTCCACGACTCAATGGC
* * * *
4109967 ATTTTTTTCTTCAAAGTCCACAACTTAGTGGCATCTCTT-TTTT--AAGTCCACGACT-TAGTGG
1 ATTCTCTTCTCCAAAGTCCACAACTTAGTGGCACCTCTTCTTTTCAAAGTCCACGACTCTAGTGG
*
4110028 CATATCTTCTCAAAGTCCACGACTCAATGGCATC-TTTTCTTCAAAGTCAACGACTCAGTGGCAA
66 CATATCTTCTCAAAGTCCACGACTCAATGGCATCTTTTTCTTCAAAGTCAACGACTCAATGGC-A
** *
4110092 TCTCTTC-TCAAAGTCCATGACTCAGTGGCATCTCTTCCCAAAGTCCATGACTCAGTGG-AAACT
130 TCTCTTCTTCAAAGTCCACAACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCAAACT
*
4110155 CTTC-TCAAAGTCCACGACTCGATGGC
195 CTTCTTCAAAGTCCACGACTCAATGGC
* * *
4110181 A-TCTCTTC-CCAAAGTCCACGACTCT-GTGGCACCTTTTTCTTTTCAAAGTCCACAACTCT-GT
1 ATTCTCTTCTCCAAAGTCCACAACT-TAGTGGCACC-TCTTCTTTTCAAAGTCCACGACTCTAGT
4110242 GGCAT
64 GGCAT
4110247 CCTTTTAAGT
Statistics
Matches: 236, Mismatches: 34, Indels: 24
0.80 0.12 0.08
Matches are distributed among these distances:
212 20 0.08
213 9 0.04
214 24 0.10
215 6 0.03
216 89 0.38
217 7 0.03
219 37 0.16
220 20 0.08
221 18 0.08
222 5 0.02
223 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (221 bp):
ATTCTCTTCTCCAAAGTCCACAACTTAGTGGCACCTCTTCTTTTCAAAGTCCACGACTCTAGTGG
CATATCTTCTCAAAGTCCACGACTCAATGGCATCTTTTTCTTCAAAGTCAACGACTCAATGGCAT
CTCTTCTTCAAAGTCCACAACTCAGTGGCATCTCTTCCCAAAGTCCACGACTCAGTGGCAAACTC
TTCTTCAAAGTCCACGACTCAATGGC
Found at i:4110285 original size:34 final size:33
Alignment explanation
Indices: 4110192--4110663 Score: 436
Period size: 34 Copynumber: 14.8 Consensus size: 33
4110182 TCTCTTCCCA
* *
4110192 AAGTCCACGACTCTGTGGCACCTTTTT-CTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
4110224 CAAAGTCCACAACTCTGTGGCA------TCCTTTT
1 --AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
4110253 AAGTCCACAACTCCGTGGCACTCTTTTTCC-TTT
1 AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
4110286 AAGTCTACAACTCCGTGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
4110313 AAGTCTACAACTCCATGGCACTCTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
4110347 AAGTCCACAACTCCGTGGCACC--TTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
4110378 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
4110411 AAAGCCCATAACTCCGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* *
4110446 AAGTCCATAACTCCGTGGCA-C-----CCTTTG
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * **
4110473 AAGTCCACATCCCCGTGGCATTTTTTTCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
** *
4110506 AAGTCCACAACTCTATGGCACCTTGTTT-TTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTTCCTTTT
* *
4110539 AAGTCCACAACTTCGTGGCACC-TTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
4110571 AAGTCCACGACTCCGTAGCACATTTTTCCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT-CCTTTT
* * *
4110605 AAGCCCATACCTCCGTGGCATCCCTTTTTCC-TTT
1 AAGTCCACAACTCCGTGGCA--CCTTTTTCCTTTT
*
4110639 AAGTCCACAACTCCATGGCACCTTT
1 AAGTCCACAACTCCGTGGCACCTTT
4110664 AAGTCCAATA
Statistics
Matches: 364, Mismatches: 42, Indels: 66
0.77 0.09 0.14
Matches are distributed among these distances:
26 2 0.01
27 63 0.17
28 1 0.00
29 6 0.02
31 35 0.10
32 30 0.08
33 81 0.22
34 127 0.35
35 13 0.04
36 6 0.02
ACGTcount: A:0.20, C:0.32, G:0.13, T:0.36
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:4110304 original size:60 final size:59
Alignment explanation
Indices: 4110192--4110632 Score: 300
Period size: 60 Copynumber: 7.0 Consensus size: 59
4110182 TCTCTTCCCA
* * * *
4110192 AAGTCCACGACTCTGTGGCACCTTTTTCTTTTCAAAGTCCACAACTCTGTGGCATCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTT--AAGTCCACAACTCCGTGGCATCCTTTT
* *
4110253 AAGTCCACAACTCCGTGGCACTCTTTTTCCTTTAAGTCTACAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTAAGTCCACAACTCCGTGGCATCCTTTT
* *
4110313 AAGTCTACAACTCCATGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTCCTTTT
1 AAGTCCACAACTCCGTGGCAC-CTTTTTCC-TTTAAGTCCACAACTCCGTGGCA----TCCTTTT
* * *
4110378 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACCTTTTTC-CTTT-AAGTCCACAACTCCGTGGCA-------TCCT
4110443 TTT
57 TTT
* * *
4110446 AAGTCCATAACTCCGTGGCA-C-----CCTTTGAAGTCCACATCCCCGTGGCATTTTTTTCCTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTT-AAGTCCACAACTCCGTGGCA------TCCTTT
4110505 T
59 T
** ** * *
4110506 AAGTCCACAACTCTATGGCACCTTGTTTTTTTTAAGTCCACAACTTCGTGGCACCTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTT-TTTCCTTTAAGTCCACAACTCCGTGGCA-----TCCTTTT
* * * * * *
4110571 AAGTCCACGACTCCGTAGCACATTTTTCCCTTTTAAGCCCATACCTCCGTGGCATCCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT-CC-TTTAAGTCCACAACTCCGTGGCAT-CCTTTT
4110633 TCCTTTAAGT
Statistics
Matches: 311, Mismatches: 48, Indels: 41
0.78 0.12 0.10
Matches are distributed among these distances:
60 81 0.26
61 62 0.20
62 16 0.05
64 13 0.04
65 71 0.23
66 36 0.12
67 4 0.01
68 28 0.09
ACGTcount: A:0.20, C:0.31, G:0.13, T:0.36
Consensus pattern (59 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCCTTTAAGTCCACAACTCCGTGGCATCCTTTT
Found at i:4110310 original size:26 final size:26
Alignment explanation
Indices: 4110281--4110338 Score: 89
Period size: 27 Copynumber: 2.2 Consensus size: 26
4110271 CACTCTTTTT
*
4110281 CCTTTAAGTCTACAACTCCGTGGCAC
1 CCTTTAAGTCTACAACTCCATGGCAC
4110307 CCTTTTAAGTCTACAACTCCATGGCAC
1 CC-TTTAAGTCTACAACTCCATGGCAC
*
4110334 TCTTT
1 CCTTT
4110339 TTCCTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 5 0.17
27 24 0.83
ACGTcount: A:0.22, C:0.33, G:0.12, T:0.33
Consensus pattern (26 bp):
CCTTTAAGTCTACAACTCCATGGCAC
Found at i:4110370 original size:26 final size:27
Alignment explanation
Indices: 4110340--4110403 Score: 85
Period size: 31 Copynumber: 2.3 Consensus size: 27
4110330 GCACTCTTTT
4110340 TCCTTTTAAGTCCACAACTCCGTGGCA
1 TCCTTTTAAGTCCACAACTCCGTGGCA
4110367 CCTTTCCTTTTAAGTCCACAACTCCGTGGCA
1 ----TCCTTTTAAGTCCACAACTCCGTGGCA
4110398 -CCTTTT
1 TCCTTTT
4110404 TCTTTTTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
26 6 0.18
31 27 0.82
ACGTcount: A:0.19, C:0.34, G:0.12, T:0.34
Consensus pattern (27 bp):
TCCTTTTAAGTCCACAACTCCGTGGCA
Found at i:4110438 original size:159 final size:160
Alignment explanation
Indices: 4110261--4110631 Score: 482
Period size: 159 Copynumber: 2.3 Consensus size: 160
4110251 TTAAGTCCAC
* * * *
4110261 AACTCCGTGGCACTCTTTTTCC-TTTAAGTCTACAACTCCGTGGCACCCTTTTAAGTCTACAACT
1 AACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTGAAGTCCACAACC
*
4110325 CCATGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACC-T-TTCCTTTTAAGTCCACAA
66 CCATGGCA-TCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACAA
4110388 CTCCGTGGCACCTTTTTCTTTTTAAAGCCCAT
130 CTCCGTGGCACC-TTTTCTTTTTAAAGCCCAT
* *
4110420 AACTCCGTGGCACTCTTTTTCCTTTTAAGTCCATAACTCCGTGGCACCCTTTGAAGTCCACATCC
1 AACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTGAAGTCCACAACC
* * * **
4110485 CCGTGGCATTTTTTTCCTTTTAAGTCCACAACTCTATGGCACCTTGTTTTTTTTAAGTCCACAAC
66 CCATGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACAAC
* * *
4110550 TTCGTGGCACCTTTTCTTTTT-AAGTCCAC
131 TCCGTGGCACCTTTTCTTTTTAAAGCCCAT
* * * * * *
4110579 GACTCCGTAGCACAT-TTTTCCCTTTTAAGCCCATACCTCCGTGGCATCCCTTT
1 AACTCCGTGGCAC-TCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-CCCTTT
4110632 TTCCTTTAAG
Statistics
Matches: 187, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
159 99 0.53
160 61 0.33
161 27 0.14
ACGTcount: A:0.19, C:0.32, G:0.13, T:0.37
Consensus pattern (160 bp):
AACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCCTTTGAAGTCCACAACC
CCATGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCTTGTTCCTTTTAAGTCCACAAC
TCCGTGGCACCTTTTCTTTTTAAAGCCCAT
Found at i:4110518 original size:193 final size:191
Alignment explanation
Indices: 4110307--4110670 Score: 529
Period size: 193 Copynumber: 1.9 Consensus size: 191
4110297 TCCGTGGCAC
*
4110307 CCTTTTAAGTCTACAACTCCATGGCACTCTT-TTTCCTTTTAAGTCCACAACTCCGTGGCACC-T
1 CCTTTTAAGTCCACAACTCCATGGCAC-CTTGTTT-CTTTTAAGTCCACAACTCCGTGGCACCTT
* * *
4110370 TTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTT-CTTTTTAAAGCCCATAACTCCGTGGCA-C
64 TTCCTTTTAAGTCCACAACTCCGTAGCACATTTTTCCCTTTT-AAGCCCATAACTCCGTGGCATC
* * *
4110433 TCTTTTTCCTTTTAAGTCCATAACTCCGTGGCACCCTTTGAAGTCCACATCCCCGTGGCATTTTT
128 CCTTTTTCC-TTTAAGTCCACAACTCCATGGCA-CCTTT-AAGTCCACATCCCCGTGGCATTTTT
4110498 TT
190 TT
* * *
4110500 CCTTTTAAGTCCACAACTCTATGGCACCTTGTTTTTTTTAAGTCCACAACTTCGTGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCATGGCACCTTGTTTCTTTTAAGTCCACAACTCCGTGGCACCTTTT
* * *
4110565 CTTTTTAAGTCCACGACTCCGTAGCACATTTTTCCCTTTTAAGCCCATACCTCCGTGGCATCCCT
66 CCTTTTAAGTCCACAACTCCGTAGCACATTTTTCCCTTTTAAGCCCATAACTCCGTGGCATCCCT
4110630 TTTTCCTTTAAGTCCACAACTCCATGGCACCTTTAAGTCCA
131 TTTTCCTTTAAGTCCACAACTCCATGGCACCTTTAAGTCCA
4110671 ATATCGCTGG
Statistics
Matches: 154, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
191 7 0.05
192 33 0.21
193 100 0.65
194 14 0.09
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.37
Consensus pattern (191 bp):
CCTTTTAAGTCCACAACTCCATGGCACCTTGTTTCTTTTAAGTCCACAACTCCGTGGCACCTTTT
CCTTTTAAGTCCACAACTCCGTAGCACATTTTTCCCTTTTAAGCCCATAACTCCGTGGCATCCCT
TTTTCCTTTAAGTCCACAACTCCATGGCACCTTTAAGTCCACATCCCCGTGGCATTTTTTT
Found at i:4110769 original size:43 final size:43
Alignment explanation
Indices: 4110654--4111164 Score: 225
Period size: 48 Copynumber: 11.3 Consensus size: 43
4110644 CACAACTCCA
* *
4110654 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA-TT
1 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACAT
* * * *
4110696 TGACACCTTTATCTTTAAGACCAATGTCGCTAGCCTTGAATTAGCACAT
1 TGGCA-C-----CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACAT
* * * *
4110745 TGGCACCTTTAAGTCCAATATCGCTGGTCTTGAATCAACATAT
1 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACAT
* *
4110788 TGGCACCTTTATCTTTAAGACCAATGTCGCT-GACCTTGAATCAGCACAT
1 TGGCA-C-----CTTTAAGTCCAATATCGCTAG-CCTTGAATCAGCACAT
* *
4110837 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAACATAT
1 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACAT
* * * * *
4110880 TGGCATCTTTATCATCTTGAGTCCAATATTGCTGGCCTTGAATCATCATAT
1 TGGCA-C-----C-T-TTAAGTCCAATATCGCTAGCCTTGAATCAGCACAT
* * * * *
4110931 TGGCACCTTGTCTCTAAGACCAATGTTGTTGGCCTTGAATCAGCACAT
1 TGGCACC---T-T-TAAGTCCAATATCGCTAGCCTTGAATCAGCACAT
* * * *
4110979 TGGCA----TAAGCCCAATATTGCTGGCCTTGAATCAGCATAT
1 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACAT
* * * * * *
4111018 TGGCACCTTGTCTTTAAGACCAATGTTGTTGGCCTTAAATCAGCACAT
1 TGGCA-C----CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACAT
* * * *
4111066 TGGCA----TAAGCCCAATATCGCTGGCCTTGAATTAGCATAT
1 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACAT
* * * * *
4111105 TGGTACCTTCATCTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACAT
1 TGG------CACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACAT
4111154 TGGCA-CTTTAA
1 TGGCACCTTTAA
4111165 CCATCTTTAA
Statistics
Matches: 369, Mismatches: 55, Indels: 90
0.72 0.11 0.18
Matches are distributed among these distances:
39 65 0.18
42 10 0.03
43 74 0.20
44 3 0.01
45 3 0.01
47 3 0.01
48 100 0.27
49 73 0.20
50 2 0.01
51 36 0.10
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (43 bp):
TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCACAT
Found at i:4110826 original size:49 final size:49
Alignment explanation
Indices: 4110660--4111453 Score: 534
Period size: 49 Copynumber: 16.8 Consensus size: 49
4110650 TCCATGGCAC
*
4110660 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAT-TTGACACCTTTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
4110708 CTTTAAGACCAATGTCGCTAGCCTTGAATTAGCACATTGGCA-C-----
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
4110751 CTTTAAGTCCAATATCGCTGGTCTTGAATCAACATATTGGCACCTTTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
4110800 CTTTAAGACCAATGTCGCTGACCTTGAATCAGCACATTGGCA-C-----
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * *
4110843 CTTTAAGTCCAATATCGCTAGCCTTGAATCAACATATTGGCATCTTTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
4110892 CATCTTGAGTCCAATATTGCTGGCCTTGAATCATCATATTGGCACC-TTGT
1 C-T-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * * *
4110942 CTCTAAGACCAATGTTGTTGGCCTTGAATCAGCACATTGG---C---A-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * *
4110984 ---TAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCACC-TTGT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * * *
4111029 CTTTAAGACCAATGTTGTTGGCCTTAAATCAGCACATTGG---C---A-
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
4111071 ---TAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGTACCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
4111117 CTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGGCA-CTTTAACCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT----AT
* * * * * *
4111169 CTTTAAGTCTAATGTCG-TCGACCTTAAATCAGCATATTGGTATCTTTAT
1 CTTTAAGTCCAATATCGCT-GGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
4111218 CTTTAAGTCCGATATTGCTGGCCATGAATCAGAATATTGGAACCTTTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
4111267 CTTTAGGACTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
4111316 CTTTAAGTCCGATATCGTTGGCCTTGAATCACCATATTGGCATCTTTAA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * ** *
4111365 CATTCTTAAGCCCAATGTTGCTGGCCTTGTCTCAGCACATTGGCA--TTCT-T
1 C--T-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TAT
* * * * * *
4111415 CTTCAAGTCTAATGTCGCCGGCCATGAATCAGCACATTG
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
4111454 TCATTCTTCG
Statistics
Matches: 583, Mismatches: 118, Indels: 91
0.74 0.15 0.11
Matches are distributed among these distances:
39 63 0.11
42 2 0.00
43 71 0.12
44 2 0.00
45 3 0.01
47 29 0.05
48 99 0.17
49 194 0.33
50 9 0.02
51 40 0.07
52 67 0.11
53 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (49 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
Found at i:4110828 original size:92 final size:92
Alignment explanation
Indices: 4110654--4110939 Score: 414
Period size: 92 Copynumber: 3.1 Consensus size: 92
4110644 CACAACTCCA
* *
4110654 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAT-TTGACACCTTTATCTTTAAGACC
1 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACC
*
4110718 AATGTCGCT-AGCCTTGAATTAGCACAT
66 AATGTCGCTGA-CCTTGAATCAGCACAT
*
4110745 TGGCACCTTTAAGTCCAATATCGCTGGTCTTGAATCAACATATTGGCACCTTTATCTTTAAGACC
1 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACC
4110810 AATGTCGCTGACCTTGAATCAGCACAT
66 AATGTCGCTGACCTTGAATCAGCACAT
* * * *
4110837 TGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAACATATTGGCATCTTTATCATCTTGAGT
1 TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATC-T-TTAAGA
* * * * *
4110902 CCAATATTGCTGGCCTTGAATCATCATAT
64 CCAATGTCGCTGACCTTGAATCAGCACAT
4110931 TGGCACCTT
1 TGGCACCTT
4110940 GTCTCTAAGA
Statistics
Matches: 177, Mismatches: 14, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
91 39 0.22
92 99 0.56
93 2 0.01
94 37 0.21
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (92 bp):
TGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTTTAAGACC
AATGTCGCTGACCTTGAATCAGCACAT
Found at i:4111004 original size:39 final size:39
Alignment explanation
Indices: 4110945--4111107 Score: 146
Period size: 39 Copynumber: 3.9 Consensus size: 39
4110935 ACCTTGTCTC
* *
4110945 TAAGACCAATGTTGTTGGCCTTGAATCAGCACATTGGCA
1 TAAGACCAATATTGCTGGCCTTGAATCAGCACATTGGCA
* *
4110984 TAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCA
1 TAAGACCAATATTGCTGGCCTTGAATCAGCACATTGGCA
* * *
4111023 CCTTGTCTTTAAGACCAATGTTGTTGGCCTTAAATCAGCACATTGGCA
1 ---------TAAGACCAATATTGCTGGCCTTGAATCAGCACATTGGCA
* * * *
4111071 TAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGG
1 TAAGACCAATATTGCTGGCCTTGAATCAGCACATTGG
4111108 TACCTTCATC
Statistics
Matches: 99, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
39 65 0.66
48 34 0.34
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (39 bp):
TAAGACCAATATTGCTGGCCTTGAATCAGCACATTGGCA
Found at i:4111033 original size:143 final size:140
Alignment explanation
Indices: 4110756--4111022 Score: 385
Period size: 142 Copynumber: 1.9 Consensus size: 140
4110746 GGCACCTTTA
* *
4110756 AGTCCAATATCGCTGGTCTTGAATCAACATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGA
1 AGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTCTAAGACCAATGTCGCTGA
*
4110821 CCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTAGCCTTGAATCAACATATTGGCAT
66 CCTTGAATCAGCACATTGGCA-C--TAAGCCCAATATCGCTAGCCTTGAATCAACATATTGGCAT
4110886 CTTTATCATCTTG
128 CTTTATCATCTTG
* * * * * *
4110899 AGTCCAATATTGCTGGCCTTGAATCATCATATTGGCACC-TTGTCTCTAAGACCAATGTTGTTGG
1 AGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTCTAAGACCAATGTCGCTGA
* * *
4110963 CCTTGAATCAGCACATTGGCA-TAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCA
66 CCTTGAATCAGCACATTGGCACTAAGCCCAATATCGCTAGCCTTGAATCAACATATTGGCA
4111023 CCTTGTCTTT
Statistics
Matches: 112, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
138 35 0.31
142 41 0.37
143 36 0.32
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (140 bp):
AGTCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTATCTCTAAGACCAATGTCGCTGA
CCTTGAATCAGCACATTGGCACTAAGCCCAATATCGCTAGCCTTGAATCAACATATTGGCATCTT
TATCATCTTG
Found at i:4111048 original size:87 final size:87
Alignment explanation
Indices: 4110902--4111158 Score: 433
Period size: 87 Copynumber: 2.9 Consensus size: 87
4110892 CATCTTGAGT
* *
4110902 CCAATATTGCTGGCCTTGAATCATCATATTGGCACCTTGTCTCTAAGACCAATGTTGTTGGCCTT
1 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTTGTTGGCCTT
4110967 GAATCAGCACATTGGCATAAGC
66 GAATCAGCACATTGGCATAAGC
4110989 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTTGTTGGCCTT
1 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTTGTTGGCCTT
*
4111054 AAATCAGCACATTGGCATAAGC
66 GAATCAGCACATTGGCATAAGC
* * * * *
4111076 CCAATATCGCTGGCCTTGAATTAGCATATTGGTACCTTCATCTTTAAGACCAATGTCGTTGGCCT
1 CCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTTGTTGGCCT
4111141 TGAATCAGCACATTGGCA
65 TGAATCAGCACATTGGCA
4111159 CTTTAACCAT
Statistics
Matches: 160, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
87 119 0.74
88 41 0.26
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (87 bp):
CCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTTGTTGGCCTT
GAATCAGCACATTGGCATAAGC
Found at i:4111374 original size:150 final size:147
Alignment explanation
Indices: 4111071--4111453 Score: 385
Period size: 150 Copynumber: 2.6 Consensus size: 147
4111061 CACATTGGCA
* * * * * *
4111071 TAAGCCCAATATCGCTGGCCTTGAATTAGCATATTGGTACCTTCATCTTTAAGACCAATGTCGTT
1 TAAGCCCAATATTGCTGGCCATGAATCAGAATATTGGAACCTTCATCTTTAAGACCAATGTCGCT
* * *
4111136 GGCCTTGAATCAGCACATTGGCACTTTAACCATCTTTAAGTCTAATGTCGTCGACCTTAAATCAG
66 GGCCTTGAATCAGCACATTGGCACTTT-A--ATCTTTAAGTCCAATATCGTCGACCTTAAATCAC
* *
4111201 CATATTGGTATCTTTATCTT
128 CATATTGGCATCTTTAACTT
* * * * *
4111221 TAAGTCCGATATTGCTGGCCATGAATCAGAATATTGGAACCTTTATCTTTAGGACTAATGTCGCT
1 TAAGCCCAATATTGCTGGCCATGAATCAGAATATTGGAACCTTCATCTTTAAGACCAATGTCGCT
* * * *
4111286 GGCCTTGAATCAGCACATTGGCACCTTT-ATCTTTAAGTCCGATATCGTTGGCCTTGAATCACCA
66 GGCCTTGAATCAGCACATTGGCA-CTTTAATCTTTAAGTCCAATATCGTCGACCTTAAATCACCA
4111350 TATTGGCATCTTTAACATTCT
130 TATTGGCATCTTTAAC--T-T
* * ** * * * * * * * *
4111371 TAAGCCCAATGTTGCTGGCCTTGTCTCAGCACATTGG--CATTCTTCTTCAAGTCTAATGTCGCC
1 TAAGCCCAATATTGCTGGCCATGAATCAGAATATTGGAACCTTCATCTTTAAGACCAATGTCGCT
*
4111434 GGCCATGAATCAGCACATTG
66 GGCCTTGAATCAGCACATTG
4111454 TCATTCTTCG
Statistics
Matches: 193, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
147 43 0.22
148 38 0.20
149 1 0.01
150 107 0.55
151 4 0.02
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (147 bp):
TAAGCCCAATATTGCTGGCCATGAATCAGAATATTGGAACCTTCATCTTTAAGACCAATGTCGCT
GGCCTTGAATCAGCACATTGGCACTTTAATCTTTAAGTCCAATATCGTCGACCTTAAATCACCAT
ATTGGCATCTTTAACTT
Found at i:4112080 original size:21 final size:20
Alignment explanation
Indices: 4112052--4112090 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
4112042 TATATTTTTG
4112052 TCTAAATGTATAGATACATT
1 TCTAAATGTATAGATACATT
*
4112072 TCTAGAATGTATCGATACA
1 TCTA-AATGTATAGATACA
4112091 AGGTCCCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (20 bp):
TCTAAATGTATAGATACATT
Found at i:4112546 original size:13 final size:13
Alignment explanation
Indices: 4112530--4112559 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
4112520 TTGCATTGTT
4112530 CATTGTATCGATA
1 CATTGTATCGATA
4112543 CATTGTATCGATA
1 CATTGTATCGATA
4112556 CATT
1 CATT
4112560 CTGGGTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:4112600 original size:20 final size:19
Alignment explanation
Indices: 4112575--4112629 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
4112565 TTTACCCAGA
4112575 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
4112595 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
*
4112615 TGCATCGATACATTT
1 TGTATCGATACATTT
4112630 AGGCATTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:4114602 original size:28 final size:28
Alignment explanation
Indices: 4114569--4114642 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
4114559 TTTCATAATT
* **
4114569 GGGGATACTCCAACCCTGTTATTTCATC
1 GGGGATACTCCAACCCCGTTATTTCAGA
*
4114597 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTATTTCAGA
4114625 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
4114643 GCTTTATATT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCAGA
Found at i:4114710 original size:110 final size:109
Alignment explanation
Indices: 4114557--4114767 Score: 341
Period size: 110 Copynumber: 1.9 Consensus size: 109
4114547 AAAACACCAA
* *
4114557 TTTTTCATAATTGGGGATACTCCAACCCTGTTATTTCATCGGGGATACTCCAACCCCGTTATTTC
1 TTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCATCGGGGATACTCCAACCCCGTTATTTC
* *
4114622 CGAGGGGATACTCCAACCCCGGCTTTATATTCTAAAAATATTGTT
66 CGAGGAGATACTCCAACCCCGACTTTAT-TTCTAAAAATATTGTT
* *
4114667 TTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATCGGGGATACTCCAATCCCGTTATTTC
1 TTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCATCGGGGATACTCCAACCCCGTTATTTC
* *
4114732 CTAGGAGATACTCCAACCCCGATTTTATTTCTAAAA
66 CGAGGAGATACTCCAACCCCGACTTTATTTCTAAAA
4114768 TACCAATTTT
Statistics
Matches: 93, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
109 8 0.09
110 85 0.91
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.34
Consensus pattern (109 bp):
TTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCATCGGGGATACTCCAACCCCGTTATTTC
CGAGGAGATACTCCAACCCCGACTTTATTTCTAAAAATATTGTT
Found at i:4114715 original size:28 final size:28
Alignment explanation
Indices: 4114676--4114752 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
4114666 TTTTTTCATA
*
4114676 ATCGGGGGTACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
*
4114704 ATCGGGGATACTCCAATCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
* * *
4114732 CTAGGAGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
4114753 ATTTTATTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.26
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:4114807 original size:51 final size:51
Alignment explanation
Indices: 4114738--4114854 Score: 155
Period size: 51 Copynumber: 2.3 Consensus size: 51
4114728 TTTCCTAGGA
* * * *
4114738 GATACTCCAACCCCGATTTTATTTCTAAAATACCAATTT-TCCACAATCTGG
1 GATACTCCAACCCCGATTTTATATCCAAAACACCAATTTCT-CACAATCGGG
* *
4114789 GATACTCCAACTCTGATTTTATATCCAAAACACCAATTTCTCACAATCGGG
1 GATACTCCAACCCCGATTTTATATCCAAAACACCAATTTCTCACAATCGGG
*
4114840 GATACTCTAACCCCG
1 GATACTCCAACCCCG
4114855 TTATTTTCGC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 55 0.98
52 1 0.02
ACGTcount: A:0.32, C:0.29, G:0.09, T:0.30
Consensus pattern (51 bp):
GATACTCCAACCCCGATTTTATATCCAAAACACCAATTTCTCACAATCGGG
Found at i:4114871 original size:79 final size:78
Alignment explanation
Indices: 4114788--4115015 Score: 249
Period size: 79 Copynumber: 2.9 Consensus size: 78
4114778 CCACAATCTG
* * * *
4114788 GGATACTCCAACTCTGATTTTATATCCAAAACACCAATTTCTCACAATCGGGGATACTCTAACCC
1 GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTT-TCATAATCGGGGATACTCTAACCC
*
4114853 CGTTATTTTCGCGA
65 CGTTATTTTCGAGA
* * * * * * *
4114867 GGATACTCCAACCCCAATTTTATTTTCAAAATACCGATTTTCTATAATCAGGGATACTCCAACCT
1 GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTC-ATAATCGGGGATACTCTAACCC
* *
4114932 TGTTATTTTCGAGG
65 CGTTATTTTCGAGA
** * * *
4114946 GGATACTTTAACCCCGATTTTTATTTCTACAACACCAATTTTTCATAATCGGGGATACTCTAGCC
1 GGATACTCCAACCCCGA-TTTTATTTCCAAAACACCAA-TTTTCATAATCGGGGATACTCTAACC
4115011 CCGTT
64 CCGTT
4115016 GTTATCTCCA
Statistics
Matches: 119, Mismatches: 27, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
78 2 0.02
79 76 0.64
80 36 0.30
81 5 0.04
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (78 bp):
GGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTCATAATCGGGGATACTCTAACCCC
GTTATTTTCGAGA
Found at i:4127076 original size:1 final size:1
Alignment explanation
Indices: 4127072--4127150 Score: 59
Period size: 1 Copynumber: 79.0 Consensus size: 1
4127062 TTTCTTTTTC
* * * * * * * * *
4127072 AAAAAACAAAAAACAACAAAAAAAACAAAAAAACAAAAAAAAACAAAAAAACAAAAAACAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
4127137 AAACAAAGAAAAAA
1 AAAAAAAAAAAAAA
4127151 GAGAGACAAG
Statistics
Matches: 56, Mismatches: 22, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (1 bp):
A
Found at i:4127091 original size:10 final size:9
Alignment explanation
Indices: 4127072--4127149 Score: 92
Period size: 9 Copynumber: 8.7 Consensus size: 9
4127062 TTTCTTTTTC
4127072 AAAAAACAA
1 AAAAAACAA
4127081 AAAACAACAA
1 AAAA-AACAA
4127091 AAAAAAC-A
1 AAAAAACAA
4127099 AAAAAACAA
1 AAAAAACAA
4127108 AAAAAA-ACA
1 AAAAAACA-A
4127117 AAAAAAC--
1 AAAAAACAA
4127124 AAAAAACAA
1 AAAAAACAA
4127133 AACAAAACAA
1 AA-AAAACAA
4127143 AGAAAAA
1 A-AAAAA
4127150 AGAGAGACAA
Statistics
Matches: 61, Mismatches: 0, Indels: 15
0.80 0.00 0.20
Matches are distributed among these distances:
7 7 0.11
8 9 0.15
9 23 0.38
10 21 0.34
11 1 0.02
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (9 bp):
AAAAAACAA
Found at i:4127092 original size:8 final size:7
Alignment explanation
Indices: 4127071--4127134 Score: 67
Period size: 7 Copynumber: 8.7 Consensus size: 7
4127061 ATTTCTTTTT
4127071 CAAAAAA
1 CAAAAAA
4127078 CAAAAAA
1 CAAAAAA
4127085 CAACAAAA
1 CAA-AAAA
4127093 -AAAACAA
1 CAAAA-AA
*
4127100 AAAAACAA
1 CAAAA-AA
*
4127108 AAAAAAA
1 CAAAAAA
4127115 CAAAAAAA
1 C-AAAAAA
4127123 CAAAAAA
1 CAAAAAA
4127130 CAAAA
1 CAAAA
4127135 CAAAACAAAG
Statistics
Matches: 52, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
6 2 0.04
7 27 0.52
8 23 0.44
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (7 bp):
CAAAAAA
Found at i:4127095 original size:18 final size:17
Alignment explanation
Indices: 4127071--4127143 Score: 94
Period size: 17 Copynumber: 4.2 Consensus size: 17
4127061 ATTTCTTTTT
*
4127071 CAAAAAACAAAAAACAA
1 CAAAAAACAAAAAAAAA
4127088 CAAAAAA-AACAAAAAAA
1 CAAAAAACAA-AAAAAAA
*
4127105 CAAAAAAAAACAAAAAAA
1 CAAAAAACAA-AAAAAAA
*
4127123 CAAAAAACAAAACAAAA
1 CAAAAAACAAAAAAAAA
4127140 CAAA
1 CAAA
4127144 GAAAAAAGAG
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
16 2 0.04
17 30 0.59
18 19 0.37
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (17 bp):
CAAAAAACAAAAAAAAA
Found at i:4127123 original size:38 final size:38
Alignment explanation
Indices: 4127072--4127150 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 38
4127062 TTTCTTTTTC
4127072 AAAAAACAAAAAACAACAAAA-AAAACAAAA-AAACAAA
1 AAAAAACAAAAAACAA-AAAACAAAACAAAACAAACAAA
*
4127109 AAAAAACAAAAAAACAAAAAACAAAACAAAACAAAGAAA
1 AAAAAAC-AAAAAACAAAAAACAAAACAAAACAAACAAA
4127148 AAA
1 AAA
4127151 GAGAGACAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
37 11 0.29
38 18 0.47
39 9 0.24
ACGTcount: A:0.86, C:0.13, G:0.01, T:0.00
Consensus pattern (38 bp):
AAAAAACAAAAAACAAAAAACAAAACAAAACAAACAAA
Found at i:4128416 original size:156 final size:156
Alignment explanation
Indices: 4128123--4128770 Score: 608
Period size: 156 Copynumber: 4.0 Consensus size: 156
4128113 ATCTAAACTT
* * * *
4128123 TCTCCTTTCACTTTTCTAGTCCTCAAAGAGTAGGACGCCTTTTCTTTTCAAAGCCCATACAAGTT
1 TCTCCTTTCACCTTT-TAGTCCTCAAAGAGCAGGATG-C----CTTTT-AAAGCCCACACAAGTT
* * * * * *
4128188 GGTGGCATTTTTTTTAGTCCTCAAAGAGTA--A-GAC---ACCTTTTAAAGCCTACACAAGTTGG
59 GGTGGCA-CTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGG
*
4128247 TGGCA-CTTCCTAGTCCTCAAAGAGTAGGACGCTC
123 TGGCATCTT-CTAGTCCTCAAAGAGCAGGACGCTC
* * * *
4128281 TCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTAAAGTCCAGATAAGTTAGTGGCA
1 TCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
4128346 CTTTTCTAGTCCTCAAAGAGCAGGACACCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT
66 CTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATCT
*
4128411 TCTAGTCTTCAAAGAGCAGGACGCTC
131 TCTAGTCCTCAAAGAGCAGGACGCTC
* * * *
4128437 TCTCCTTTCACCCTTTAGTCCTTAAAGAGTAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 TCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
4128502 CTTTTCTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTCAAAGCCCACATAAGTTGGTGGCATTT
66 CTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATCT
* *
4128567 TCCAGTCCTTAAAGAGCAGGACGCCTTTC
131 TCTAGTCCTCAAAGAGCAGGACG-C--TC
* * ** *
4128596 AAAGGCCATACAAGTTGGTGGCATTTTTTTAGTCCTCAAAGAGCAGGATGCTTTTTAAAGCCCAC
1 -----TC-T-C--CTT--T--CA-CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCAC
* * * * *
4128661 ACAAGTTGGTGGCACTTTTCTAATCCTTAAAGAGCAAGACGCCTTTTTCTTTTCAAAGCTCACAC
52 ACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTT-AAAGCCCACAC
* * * * *
4128726 AAGTTGGTAGCATTTTCTAGTCCTCAAAGAGTAGGATGCTT
116 AAGTTGGTGGCATCTTCTAGTCCTCAAAGAGCAGGACGCTC
4128767 TCTC
1 TCTC
4128771 TTTGTAAAGC
Statistics
Matches: 408, Mismatches: 57, Indels: 44
0.80 0.11 0.09
Matches are distributed among these distances:
150 19 0.05
151 19 0.05
152 6 0.01
153 1 0.00
156 187 0.46
157 23 0.06
158 14 0.03
159 2 0.00
164 2 0.00
165 2 0.00
166 2 0.00
168 2 0.00
170 1 0.00
171 1 0.00
172 2 0.00
173 83 0.20
174 42 0.10
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (156 bp):
TCTCCTTTCACCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA
CTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCATCT
TCTAGTCCTCAAAGAGCAGGACGCTC
Found at i:4128432 original size:61 final size:62
Alignment explanation
Indices: 4128317--4128432 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 62
4128307 GAGCAGGATG
* * * *
4128317 CCTTTTAAAGTCCAGATAAGTTAGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACACCTTTT
1 CCTTTTAAAGCCCACACAAGTTAGTGGCACTCTTCTAGTCCTCAAAGAGCAGGACACCTTTT
* *
4128379 CCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCTTCAAAGAGCAGGAC
1 CCTTTTAAAGCCCACACAAGTTAGTGGCACTCTTCTAGTCCTCAAAGAGCAGGAC
4128433 GCTCTCTCCT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
61 22 0.46
62 26 0.54
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (62 bp):
CCTTTTAAAGCCCACACAAGTTAGTGGCACTCTTCTAGTCCTCAAAGAGCAGGACACCTTTT
Found at i:4128593 original size:61 final size:61
Alignment explanation
Indices: 4128474--4128886 Score: 433
Period size: 61 Copynumber: 6.9 Consensus size: 61
4128464 AGTAGGATGC
4128474 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTTTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATG-CTTTTT
* * * *
4128536 CTTTCAAAGCCCACATAAGTTGGTGGCA-TTTTCCAGTCCTTAAAGAGCAGGACGC-----
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCTTTTT
* * * *
4128591 CTTTCAAAGGCCATACAAGTTGGTGGCATTTTTTTAGTCCTCAAAGAGCAGGATGC---TT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCTTTTT
* * * *
4128649 -TTT-AAAGCCCACACAAGTTGGTGGCACTTTTCTAATCCTTAAAGAGCAAGACGCCTTTTT
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATG-CTTTTT
* * * *
4128709 CTTTTCAAAGCTCACACAAGTTGGTAGCA-TTTTCTAGTCCTCAAAGAGTAGGATGCTTTCT
1 C-TTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCTTTTT
* * * * *
4128770 CTTTGTAAAGCCTACACAAGTTTGTGGCACCTTT-TAGTCCTCAAAGAGCAAGATGCCTTTCTT
1 CTTT-CAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATG-CTTT-TT
* * * * *
4128833 -TTTCAAAGCCCACACGAGTTGGTGGCGCTTTTTTA-TCCTTAAAGAGTAGGATGC
1 CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGC
4128887 ACTTTATTTT
Statistics
Matches: 291, Mismatches: 45, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
55 25 0.09
56 65 0.22
57 4 0.01
60 7 0.02
61 105 0.36
62 63 0.22
63 22 0.08
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (61 bp):
CTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCTTTTT
Found at i:4128932 original size:42 final size:42
Alignment explanation
Indices: 4128868--4129009 Score: 106
Period size: 42 Copynumber: 3.3 Consensus size: 42
4128858 CGCTTTTTTA
* * ** *
4128868 TCCTTAAAGAGTAGGATGCACTTTATTTTCCTCTCTCCTTTG
1 TCCTCAAAGAGCAGGACACACTTTATTTTCTTCTCTCCTTTG
* * * * *
4128910 TCCTCAAAGAGCAGTACACACTTCATTCCCTTATTTTCTCTTTTG
1 TCCTCAAAGAGCAGGACACACTTTATT---TTCTTCTCTCCTTTG
* * * *
4128955 TCTTCAAAAAGCAGGACGCACTTTATTTTCTTCT-TTCTTTCG
1 TCCTCAAAGAGCAGGACACACTTTATTTTCTTCTCTCCTTT-G
*
4128997 TACTCAAAGAGCA
1 TCCTCAAAGAGCA
4129010 AGACGAATTA
Statistics
Matches: 74, Mismatches: 22, Indels: 8
0.71 0.21 0.08
Matches are distributed among these distances:
41 4 0.05
42 37 0.50
45 33 0.45
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.39
Consensus pattern (42 bp):
TCCTCAAAGAGCAGGACACACTTTATTTTCTTCTCTCCTTTG
Found at i:4129112 original size:41 final size:41
Alignment explanation
Indices: 4129051--4129154 Score: 115
Period size: 41 Copynumber: 2.5 Consensus size: 41
4129041 GTAGGACGTA
*
4129051 CTCTTTTTCACTTTGCCCTCAAGAAGCAG-GACACT-TTTC-TT
1 CTCTTTTTC-CTTTGTCCTCAAGAAG-AGAGAC-CTATTTCATT
* * *
4129092 TTCTTTTTTCCTTTGTCCTCAAGGAGTGAGACCTATTTCATT
1 CTC-TTTTTCCTTTGTCCTCAAGAAGAGAGACCTATTTCATT
4129134 CTCTTTTTCCTTTGTCCTCAA
1 CTCTTTTTCCTTTGTCCTCAA
4129155 AAAGTGGGAC
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
40 3 0.06
41 41 0.76
42 10 0.19
ACGTcount: A:0.16, C:0.27, G:0.12, T:0.45
Consensus pattern (41 bp):
CTCTTTTTCCTTTGTCCTCAAGAAGAGAGACCTATTTCATT
Found at i:4129181 original size:42 final size:40
Alignment explanation
Indices: 4129091--4129181 Score: 92
Period size: 41 Copynumber: 2.2 Consensus size: 40
4129081 ACACTTTTCT
** * * *
4129091 TTTCTTTTTTCCTTTGTCCTCAAGGAGTGAGACCTATTTCA
1 TTTC-TTTTTCCTTTGTCCTCAAAAAGTGACACCCATTCCA
*
4129132 TTCTCTTTTTCCTTTGTCCTCAAAAAGTGGGACACCCCTTCCA
1 TT-TCTTTTTCCTTTGTCCTCAAAAAGT--GACACCCATTCCA
4129175 TTTCTTT
1 TTTCTTT
4129182 CCCCTCCTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
41 23 0.56
42 7 0.17
43 11 0.27
ACGTcount: A:0.16, C:0.26, G:0.12, T:0.45
Consensus pattern (40 bp):
TTTCTTTTTCCTTTGTCCTCAAAAAGTGACACCCATTCCA
Found at i:4129739 original size:20 final size:20
Alignment explanation
Indices: 4129714--4129770 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
4129704 TTTTCACAAT
4129714 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
4129734 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
4129754 TTGCATCGATACATTGT
1 TTGTATCGATACATTGT
4129771 ATCGATACAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.44
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:4129748 original size:13 final size:13
Alignment explanation
Indices: 4129732--4129794 Score: 66
Period size: 13 Copynumber: 5.3 Consensus size: 13
4129722 ATACATTGTT
4129732 CATTGTATCGATA
1 CATTGTATCGATA
4129745 CATTGT-TC---A
1 CATTGTATCGATA
*
4129754 --TTGCATCGATA
1 CATTGTATCGATA
4129765 CATTGTATCGATA
1 CATTGTATCGATA
*
4129778 CATTGTATCGACA
1 CATTGTATCGATA
4129791 CATT
1 CATT
4129795 CTGGGTTTAC
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
7 3 0.07
8 2 0.05
9 1 0.02
11 1 0.02
12 2 0.05
13 32 0.78
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:4129835 original size:20 final size:19
Alignment explanation
Indices: 4129810--4129884 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 19
4129800 TTTACCCAGA
4129810 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
* *
4129830 TGTATCAATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
* *
4129850 TGTATCGGTACATTTTACAA
1 TGTATCGATACATTTT-CAT
*
4129870 TGTATCGTTACATTT
1 TGTATCGATACATTT
4129885 AGGCATTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
19 1 0.02
20 44 0.96
21 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:4132258 original size:51 final size:51
Alignment explanation
Indices: 4132181--4132341 Score: 146
Period size: 51 Copynumber: 3.2 Consensus size: 51
4132171 TTTCATCTCA
* ** * **
4132181 GGGATACTCCAA-TCCCGGTTCCATTTCCAAAACGTCAATTTTTCTTAATCG
1 GGGATACTCCAACT-CCGATTTTATTTCCAAAACATCAATTTTTCACAATCG
* * * ** *
4132232 GGGATACTCCAACTCCGATTTTATTTCTAAAGCATCGATTTACCGCAATCG
1 GGGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCACAATCG
* * * * *
4132283 GGGATAC-ACAACTCCGATTTTATTTTCAAATCACCAATTTTTCACAATTG
1 GGGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCACAATCG
4132333 GGGATACTC
1 GGGATACTC
4132342 GAACCCCGTT
Statistics
Matches: 86, Mismatches: 22, Indels: 4
0.77 0.20 0.04
Matches are distributed among these distances:
50 40 0.47
51 45 0.52
52 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (51 bp):
GGGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTTTCACAATCG
Found at i:4132336 original size:50 final size:51
Alignment explanation
Indices: 4132216--4132340 Score: 137
Period size: 50 Copynumber: 2.5 Consensus size: 51
4132206 TCCAAAACGT
** * *
4132216 CAATTTTTCTTAATCGGGGATACTCCAACTCCGATTTTATTTCTAAAGCAT
1 CAATTTTTCACAATCGGGGATACTACAACTCCGATTTTATTTCTAAAGCAC
* ** * *
4132267 CGATTTACCGCAATCGGGGATAC-ACAACTCCGATTTTATTT-TCAAATCAC
1 CAATTTTTCACAATCGGGGATACTACAACTCCGATTTTATTTCT-AAAGCAC
*
4132317 CAATTTTTCACAATTGGGGATACT
1 CAATTTTTCACAATCGGGGATACT
4132341 CGAACCCCGT
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
49 1 0.02
50 40 0.68
51 18 0.31
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (51 bp):
CAATTTTTCACAATCGGGGATACTACAACTCCGATTTTATTTCTAAAGCAC
Found at i:4132393 original size:28 final size:29
Alignment explanation
Indices: 4132332--4132397 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 29
4132322 TTTCACAATT
* *
4132332 GGGGATACTCGAACCCCGTTATTTAATCGA
1 GGGGATACTCCAACCCCGTTATTT-ACCGA
4132362 --GGATACTCCAACCCCGTTATTT-CCGA
1 GGGGATACTCCAACCCCGTTATTTACCGA
4132388 GGGGATACTC
1 GGGGATACTC
4132398 TGACCCCAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 3 0.09
28 29 0.91
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (29 bp):
GGGGATACTCCAACCCCGTTATTTACCGA
Found at i:4132555 original size:107 final size:106
Alignment explanation
Indices: 4132282--4132559 Score: 271
Period size: 107 Copynumber: 2.6 Consensus size: 106
4132272 TACCGCAATC
* * * * *
4132282 GGGGATACAC-AACTCCGATTTTATTT-TCAAATCACCAATTTTTCACAAT-TGGGGATACTCGA
1 GGGGATACTCTAACCCCGATTTTATTTCTAAAAT-ATCAATTTTTCACAATCT--GGATACTCCA
4132344 ACCCCGTTATTTAATCGAGGATACTCCAACCCCGTTATTTCCGA
63 ACCCCGTTATTTAATCGAGGATACTCCAACCCCGTTATTTCCGA
* * * * * * *
4132388 GGGGATACTCTGACCCC-AGCTTTATATCTAAAAATATTATTTTTTTCATAATC-GGGTACTCCA
1 GGGGATACTCTAACCCCGA-TTTTATTTCT-AAAATATCA-ATTTTTCACAATCTGGATACTCCA
* * * * *
4132451 ACCTCGTTATTTCATCG-GAGATACTCCAATCCTGTTATTTCTGA
63 ACCCCGTTATTTAATCGAG-GATACTCCAACCCCGTTATTTCCGA
* *
4132495 GGGGATACTGTAACCCCGATTTTATTTCTAAAATATCAATTTTCCACAATCTGAGATACTCCAAC
1 GGGGATACTCTAACCCCGATTTTATTTCTAAAATATCAATTTTTCACAATCTG-GATACTCCAAC
4132560 TCCGATTTTA
Statistics
Matches: 136, Mismatches: 26, Indels: 19
0.75 0.14 0.10
Matches are distributed among these distances:
105 10 0.07
106 20 0.15
107 88 0.65
108 4 0.03
109 14 0.10
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (106 bp):
GGGGATACTCTAACCCCGATTTTATTTCTAAAATATCAATTTTTCACAATCTGGATACTCCAACC
CCGTTATTTAATCGAGGATACTCCAACCCCGTTATTTCCGA
Found at i:4132569 original size:51 final size:52
Alignment explanation
Indices: 4132506--4132663 Score: 198
Period size: 51 Copynumber: 3.1 Consensus size: 52
4132496 GGGATACTGT
* *
4132506 AACCCCGATTTTATTTCTAAAATATCAATTTTC-CACAATCTGAGATACTCC
1 AACCCCGATTTTATTTCTAAAATACCAATTTTCTCACAATCGGAGATACTCC
* * * *
4132557 AACTCCGATTTTATTTCCAAAACACCAA-TTTCTCACAATCGGAGATACTCT
1 AACCCCGATTTTATTTCTAAAATACCAATTTTCTCACAATCGGAGATACTCC
* * *
4132608 AACCCCGATTTTATTTTTAAAATACCAATTTTCT-ATAATCAGG-GATACTCT
1 AACCCCGATTTTATTTCTAAAATACCAATTTTCTCACAATC-GGAGATACTCC
4132659 AACCC
1 AACCC
4132664 TGTTATTTTC
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
50 4 0.04
51 82 0.88
52 7 0.08
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (52 bp):
AACCCCGATTTTATTTCTAAAATACCAATTTTCTCACAATCGGAGATACTCC
Found at i:4140216 original size:21 final size:21
Alignment explanation
Indices: 4140192--4140240 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
4140182 GTGTCCTTCT
4140192 CAAAAAGCAGAAAAAGAA-AA-A
1 CAAAAAGCA-AAAAA-AATAATA
*
4140213 CAAAAACCAAAAAAAATAATA
1 CAAAAAGCAAAAAAAATAATA
4140234 CAAAAAG
1 CAAAAAG
4140241 GGAGGGGTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.08
20 7 0.29
21 15 0.62
ACGTcount: A:0.76, C:0.12, G:0.08, T:0.04
Consensus pattern (21 bp):
CAAAAAGCAAAAAAAATAATA
Found at i:4141574 original size:28 final size:28
Alignment explanation
Indices: 4141534--4141864 Score: 418
Period size: 28 Copynumber: 11.7 Consensus size: 28
4141524 GTCAATACGA
4141534 CACCTTTTCAAAGCCCACAAGTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
*
4141562 CACCTTTTCAAAGCCCACAAGTCAATGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
*
4141590 CACCCTTTCAAAGCCCACAAGTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
*
4141618 TATCC-TTTCAAAGCCCACAAGTCAGTGG
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
4141646 CATCC-TTTCAAAGCCCACAAGTCAGTGG
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
* *
4141674 CATCC-TTTCAGAGCCCACAAGTCAGGGG
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
*
4141702 CAACCCTTTTCAAAGCCCACAAGTCAATGG
1 C-A-CCTTTTCAAAGCCCACAAGTCAGTGG
4141732 CACCTTTTCAAAGCCCACAAGTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
* **
4141760 CATCC-TTTCAAAGCCTACAAGTCAGTAA
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGG
* * *
4141788 CACCCTTTCAAAACCTACAAGTCAGTGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
** *
4141816 CACCTTTTCAAAGTGCACAAGTCAATGG
1 CACCTTTTCAAAGCCCACAAGTCAGTGG
*
4141844 CAACCTCTTCTAAAGCCCACA
1 C-ACCTTTTC-AAAGCCCACA
4141865 CAGGTCGGTG
Statistics
Matches: 269, Mismatches: 27, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
27 2 0.01
28 223 0.83
29 15 0.06
30 29 0.11
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.21
Consensus pattern (28 bp):
CACCTTTTCAAAGCCCACAAGTCAGTGG
Found at i:4141825 original size:142 final size:141
Alignment explanation
Indices: 4141534--4141864 Score: 495
Period size: 142 Copynumber: 2.3 Consensus size: 141
4141524 GTCAATACGA
4141534 CACCTTTTCAAAGCCCACAAGTCAGTGGC-ACCTTTTCAAAGCCCACAAGTCAATGGCACCCTTT
1 CACCTTTTCAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAGCCCACAAGTCAATGGCACCCTTT
* ** * *
4141598 CAAAGCCCACAAGTCAGTGGTATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCA
66 CAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTAACACCCTTTCAAAACCCA
4141663 CAAGTCAGTGG
131 CAAGTCAGTGG
* * *
4141674 CATCC-TTTCAGAGCCCACAAGTCAGGGGCAACCCTTTTCAAAGCCCACAAGTCAATGGCACCTT
1 CA-CCTTTTCAAAGCCCACAAGTCAGTGGCAA-CCTTTTCAAAGCCCACAAGTCAATGGCACCCT
*
4141738 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCTACAAGTCAGTAACACCCTTTCAAAACC
64 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTAACACCCTTTCAAAACC
*
4141803 TACAAGTCAGTGG
129 CACAAGTCAGTGG
** * *
4141816 CACCTTTTCAAAGTGCACAAGTCAATGGCAACCTCTTCTAAAGCCCACA
1 CACCTTTTCAAAGCCCACAAGTCAGTGGCAACCTTTTC-AAAGCCCACA
4141865 CAGGTCGGTG
Statistics
Matches: 170, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
140 24 0.14
141 11 0.06
142 135 0.79
ACGTcount: A:0.31, C:0.32, G:0.16, T:0.21
Consensus pattern (141 bp):
CACCTTTTCAAAGCCCACAAGTCAGTGGCAACCTTTTCAAAGCCCACAAGTCAATGGCACCCTTT
CAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTAACACCCTTTCAAAACCCA
CAAGTCAGTGG
Found at i:4141923 original size:32 final size:30
Alignment explanation
Indices: 4141843--4141937 Score: 111
Period size: 31 Copynumber: 3.0 Consensus size: 30
4141833 CAAGTCAATG
* *
4141843 GCAACCTCTTCTAAAGCCCACACAGGTCGGT
1 GCAACCT-TTCTAAAGCCCACACAAGTTGGT
4141874 GTCAATCC-TTCTAAAGCCCACACAAGTTGGT
1 G-CAA-CCTTTCTAAAGCCCACACAAGTTGGT
*
4141905 AGCAACCTTTTCTAAAGCCCACACGAGTTGGT
1 -GCAACC-TTTCTAAAGCCCACACAAGTTGGT
4141937 G
1 G
4141938 ACAGCCCTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
30 2 0.04
31 26 0.46
32 26 0.46
33 2 0.04
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (30 bp):
GCAACCTTTCTAAAGCCCACACAAGTTGGT
Found at i:4142918 original size:11 final size:11
Alignment explanation
Indices: 4142902--4142954 Score: 60
Period size: 11 Copynumber: 5.1 Consensus size: 11
4142892 TACCCAGATG
4142902 TATCGATACAT
1 TATCGATACAT
4142913 TATCGATACAT
1 TATCGATACAT
*
4142924 TTTC---A-AT
1 TATCGATACAT
4142931 GTATCGATACAT
1 -TATCGATACAT
4142943 TATCGATACAT
1 TATCGATACAT
4142954 T
1 T
4142955 TTCAATGTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
7 2 0.06
8 4 0.11
11 27 0.77
12 2 0.06
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (11 bp):
TATCGATACAT
Found at i:4142935 original size:30 final size:30
Alignment explanation
Indices: 4142899--4142971 Score: 146
Period size: 30 Copynumber: 2.4 Consensus size: 30
4142889 TTTTACCCAG
4142899 ATGTATCGATACATTATCGATACATTTTCA
1 ATGTATCGATACATTATCGATACATTTTCA
4142929 ATGTATCGATACATTATCGATACATTTTCA
1 ATGTATCGATACATTATCGATACATTTTCA
4142959 ATGTATCGATACA
1 ATGTATCGATACA
4142972 ATCTATCTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.38
Consensus pattern (30 bp):
ATGTATCGATACATTATCGATACATTTTCA
Found at i:4144139 original size:36 final size:36
Alignment explanation
Indices: 4144080--4144148 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
4144070 TTCCATACAC
*
4144080 AACACTATACTTTTACTCGTTACAT-AGACAATTCAT
1 AACACTATACTTTTACTCATTACATGAG-CAATTCAT
*
4144116 AACACTATACTTTTTC-CTATTACATGAGCAATT
1 AACACTATACTTTTACTC-ATTACATGAGCAATT
4144149 TATTTTCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 1 0.03
36 26 0.90
37 2 0.07
ACGTcount: A:0.35, C:0.22, G:0.06, T:0.38
Consensus pattern (36 bp):
AACACTATACTTTTACTCATTACATGAGCAATTCAT
Found at i:4148448 original size:50 final size:50
Alignment explanation
Indices: 4148385--4148484 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
4148375 TCTTTTGCAA
*
4148385 CCTGAAACTGAAAGTAAGATTTGCCCCTAGATCTGTAATCTTTTAGTTTT
1 CCTGAAACTGAAAGTAAGATTGGCCCCTAGATCTGTAATCTTTTAGTTTT
4148435 CCTGAAACTGAAAGTAAGATTGGCCCCTAGATCTGTAATCTTTTAGTTTT
1 CCTGAAACTGAAAGTAAGATTGGCCCCTAGATCTGTAATCTTTTAGTTTT
4148485 AGTTTAGACT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (50 bp):
CCTGAAACTGAAAGTAAGATTGGCCCCTAGATCTGTAATCTTTTAGTTTT
Found at i:4151005 original size:165 final size:164
Alignment explanation
Indices: 4150629--4151367 Score: 777
Period size: 165 Copynumber: 4.5 Consensus size: 164
4150619 CTTCTCTATG
* * * * *
4150629 AATTTTTTTAGGAGGATTTTTCTCA-ATTTTTAATTTTTAAAATTCATTAAATATTATTATTTAA
1 AATTCTTTTAGG-GGATTTTT-T-ATTTTTTTTATTTTTAAAATTCATCAAATATTATTATTTAT
* ** * *
4150693 CTCGCATTAAATCAGTTTTCAAAAATTTATTCATCTT-CATAAAATTTTGAATTTTTTCCTTGAA
63 TTCATATTAATTCAGTTTTCAAAAATTCATTCAT-TTCCAT-AAATTTTGAATTTTTTCCTTGAA
* * * * *
4150757 GTTTTCCTTTTTTTCCGAAATACGGAGTTTTTTGCTCCGTA
126 -ATCT-CTTTTTTTCCGAAATACGGAGTTTTCTACTTCGTA
* * * *
4150798 AATT-TTTTAAGAGGGATTTTTCATGGTTTTATATTTTTAAAATTCATCAAATCTTATTATTTAT
1 AATTCTTTT-AG-GGGATTTTTTAT-TTTTTTTATTTTTAAAATTCATCAAATATTATTATTTAT
* * *
4150862 TTCTTATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTAAATTTTTTCCTCGAAAT
63 TTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAAAT
*
4150927 CTC-ATTTTTCCGAAATACGGAGTTTTCTACTTCGTA
128 CTCTTTTTTTCCGAAATACGGAGTTTTCTACTTCGTA
* *
4150963 AATTCTTTTAGGGGATTTTTTTTTGTTTTTTGATTTTTAAAATTCATAAAATATTATTATTTATT
1 AATTCTTTTAGGGGATTTTTTATT-TTTTTT-ATTTTTAAAATTCATCAAATATTATTATTTATT
* * * * * * *
4151028 TCATAATAATTTATTTTTTAGAAATTAATTCATTTCTATAAATTTTGAATTTTTTCCTTGAAATC
64 TCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAAATC
** *
4151093 -CTTTTTTTCTAAAATATGGAGTTTTCTAC-TC-TA
129 TCTTTTTTTCCGAAATACGGAGTTTTCTACTTCGTA
*
4151126 TAATTTCTTTT-GGAGGATTTTTCTTGTTTTTTTTATTTTTAAAATTCATCAAATATTATTATTT
1 -AA-TTCTTTTAGG-GGA-TTTT-TTATTTTTTTTATTTTTAAAATTCATCAAATATTATTATTT
* * * * *
4151190 ATTTTATATTATTTCAGTTTCCAAAAATTCACTT-ATTTCCTTAAATTTTGGATTTTTTCCTTGA
61 ATTTCATATTAATTCAGTTTTCAAAAATTCA-TTCATTTCCATAAATTTTGAATTTTTTCCTTGA
* * *
4151254 AATCTCCTTTTTT--GAAATATGGAGTTTCCTACTAT-GTA
125 AATCTCTTTTTTTCCGAAATACGGAGTTTTCTACT-TCGTA
*
4151292 AATTCTTTCAGGGGGA-TTTTTATTTTTTTTATTTTTAAAA-TCTATCAAATATTATTATTTATT
1 AATTCTTTTA-GGGGATTTTTTATTTTTTTTATTTTTAAAATTC-ATCAAATATTATTATTTATT
*
4151355 TCATATTCATTCA
64 TCATATTAATTCA
4151368 TTTCCATAAA
Statistics
Matches: 486, Mismatches: 62, Indels: 51
0.81 0.10 0.09
Matches are distributed among these distances:
161 2 0.00
162 50 0.10
163 5 0.01
164 45 0.09
165 241 0.50
166 29 0.06
167 7 0.01
168 27 0.06
169 79 0.16
170 1 0.00
ACGTcount: A:0.29, C:0.11, G:0.08, T:0.52
Consensus pattern (164 bp):
AATTCTTTTAGGGGATTTTTTATTTTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTC
ATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAAATCTC
TTTTTTTCCGAAATACGGAGTTTTCTACTTCGTA
Found at i:4151030 original size:22 final size:22
Alignment explanation
Indices: 4151005--4151047 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
4150995 ATTTTTAAAA
4151005 TTCATAA-AATATTATTATTTAT
1 TTCATAATAAT-TTATTATTTAT
*
4151027 TTCATAATAATTTATTTTTTA
1 TTCATAATAATTTATTATTTA
4151048 GAAATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (22 bp):
TTCATAATAATTTATTATTTAT
Found at i:4151247 original size:330 final size:329
Alignment explanation
Indices: 4150655--4151619 Score: 940
Period size: 330 Copynumber: 3.0 Consensus size: 329
4150645 TTTTTCTCAA
* * ** ** *
4150655 TTTTTAATTTTTAAAATTCATTAAATATTATTATTTAACTCGCATTAAATCAGTTTTCAAAAATT
1 TTTTTTATTTTTAAAATTCATAAAATATTATTATTTATTTCATAATAAATCAGTTTTCAAAAATT
* * *
4150720 TATTCATCTTCATAAAATTTTGAATTTTTTCCTTGAAGTTTTCCTTTTTTTCCGAAATACGGAGT
66 AATTCATCTTCATAAAATTTTGAATTTTTTCCTTGAA--TATCCTTTTTTTCCAAAATACGGAGT
* *
4150785 TTTTTGCTCCGTAAATTTTTTAAGAGGGATTTTTCATGGTTTTATATTTTTAAAATTCATCAAAT
129 TTTCTACTCCGTAAATTTTTTAAGAGGGATTTTTCATGGTTTTATATTTTTAAAATTCATCAAAT
* *
4150850 CTTATTATTTATTTCTTATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTAAATTT
194 ATTATTATTTATTTCTTATTAATTCAGTTTCCAAAAATTCATTCATTTCCATAAATTTTAAATTT
* *
4150915 TTTCCTCGAAATCTCATTTTTCCGAAATACGGAGTTTTCTACT-TCGTAAATTCTTTTA-GGGGA
259 TTTCCTCGAAATCTCATTTTT-CGAAATACGGAGTTTCCTACTAT-GTAAATTCTTTCAGGGGGA
*
4150978 TTTTTTTTT
322 -TTTTTATT
* * * * *
4150987 GTTTTTTGATTTTTAAAATTCATAAAATATTATTATTTATTTCATAATAATTTATTTTTTAGAAA
1 -TTTTTT-ATTTTTAAAATTCATAAAATATTATTATTTATTTCATAATAAATCAGTTTTCAAAAA
* *
4151052 TTAATTCAT-TTC-TATAAATTTTGAATTTTTTCCTTGAA-ATCCTTTTTTTCTAAAATATGGAG
64 TTAATTCATCTTCATA-AAATTTTGAATTTTTTCCTTGAATATCCTTTTTTTCCAAAATACGGAG
** * * *
4151114 TTTTCTACT-C-TATAATTTCTTTTGGA-GGATTTTTCTTGTTTTTTTTATTTTTAAAATTCATC
128 TTTTCTACTCCGTA-AATTT-TTTAAGAGGGATTTTTCATG-GTTTTATATTTTTAAAATTCATC
* *
4151176 AAATATTATTATTTATTT-TATATTATTTCAGTTTCCAAAAATTCACTT-ATTTCCTTAAATTTT
190 AAATATTATTATTTATTTCT-TATTAATTCAGTTTCCAAAAATTCA-TTCATTTCCATAAATTTT
** * * * *
4151239 GGATTTTTTCCTTGAAATCTCCTTTTTTGAAATATGGAGTTTCCTACTATGTAAATTCTTTCAGG
253 AAATTTTTTCCTCGAAATCTCATTTTTCGAAATACGGAGTTTCCTACTATGTAAATTCTTTCAGG
4151304 GGGATTTTTATT
318 GGGATTTTTATT
*
4151316 TTTTTTATTTTTAAAA-TCTATCAAATATTATTATTTATTTCAT-AT---TCA---TTC------
1 TTTTTTATTTTTAAAATTC-ATAAAATATTATTATTTATTTCATAATAAATCAGTTTTCAAAAAT
* * * ** *
4151367 --ATT--TC--CAT-AAATTTTTAATTTTTTCCTTGAATTTCC-CTTTTTCTGAAATACTG-GTT
65 TAATTCATCTTCATAAAATTTTGAATTTTTTCCTTGAATATCCTTTTTTTCCAAAATACGGAGTT
** * * *
4151423 TTCTACTTTGTAAATTTTTTCAAGAGGGATTTTTCTTGGTTTT-TGA-TTTTAAAATTAATAAAA
130 TTCTACTCCGTAAATTTTTT-AAGAGGGATTTTTCATGGTTTTAT-ATTTTTAAAATTCATCAAA
* * ** * *
4151486 TATTATTATTTATTTCATATTAATTCAATTTTTAAAAATTCATTCATTTCCATGAATTTTGAATT
193 TATTATTATTTATTTCTTATTAATTCAGTTTCCAAAAATTCATTCATTTCCATAAATTTTAAATT
* ** * * ** * * *
4151551 TTTT-CTTGAAATTCTTTTTTTTCAAAATACGGAGTTTTCTACTCCGTAAATTTTTTCAGAGAGA
258 TTTTCCTCGAAA-TCTCATTTTTCGAAATACGGAGTTTCCTACTATGTAAATTCTTTCAGGGGGA
4151615 TTTTT
322 TTTTT
4151620 CTTGATTTAA
Statistics
Matches: 540, Mismatches: 71, Indels: 68
0.80 0.10 0.10
Matches are distributed among these distances:
306 9 0.02
307 132 0.24
308 47 0.09
309 18 0.03
310 2 0.00
312 3 0.01
320 2 0.00
323 2 0.00
326 4 0.01
327 33 0.06
328 8 0.01
329 55 0.10
330 136 0.25
331 2 0.00
332 2 0.00
333 31 0.06
334 54 0.10
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.52
Consensus pattern (329 bp):
TTTTTTATTTTTAAAATTCATAAAATATTATTATTTATTTCATAATAAATCAGTTTTCAAAAATT
AATTCATCTTCATAAAATTTTGAATTTTTTCCTTGAATATCCTTTTTTTCCAAAATACGGAGTTT
TCTACTCCGTAAATTTTTTAAGAGGGATTTTTCATGGTTTTATATTTTTAAAATTCATCAAATAT
TATTATTTATTTCTTATTAATTCAGTTTCCAAAAATTCATTCATTTCCATAAATTTTAAATTTTT
TCCTCGAAATCTCATTTTTCGAAATACGGAGTTTCCTACTATGTAAATTCTTTCAGGGGGATTTT
TATT
Found at i:4151381 original size:143 final size:144
Alignment explanation
Indices: 4151216--4151512 Score: 374
Period size: 143 Copynumber: 2.1 Consensus size: 144
4151206 GTTTCCAAAA
* *
4151216 ATTCACTT-ATTTCCTTAAATTTTGGATTTTTTCCTTGAAATCT-CCTTTTT-TGAAATA-TGGA
1 ATTCA-TTCATTTCCATAAATTTTGAATTTTTTCCTTG-AATCTCCCTTTTTCTGAAATACT-G-
* * *
4151277 GTTTCCTACTATGTAAATTCTTTC-AGGGGGATTTTTATT-TTTTTTATTTTTAAAATCT-ATCA
62 GTTTCCTACTATGTAAATTCTTTCAAGAGGGATTTTTATTGTTTTTGA-TTTTAAAAT-TAATAA
4151339 AATATTATTATTTATTTCAT
125 AATATTATTATTTATTTCAT
* *
4151359 ATTCATTCATTTCCATAAATTTTTAATTTTTTCCTTGAATTTCCCTTTTTCTGAAATACTGGTTT
1 ATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAATCTCCCTTTTTCTGAAATACTGGTTT
* * * *
4151424 TCTACTTTGTAAATTTTTTCAAGAGGGATTTTTCTTGGTTTTTGATTTTAAAATTAATAAAATAT
66 CCTACTATGTAAATTCTTTCAAGAGGGATTTTTATT-GTTTTTGATTTTAAAATTAATAAAATAT
4151489 TATTATTTATTTCAT
130 TATTATTTATTTCAT
*
4151504 ATTAATTCA
1 ATTCATTCA
4151513 ATTTTTAAAA
Statistics
Matches: 134, Mismatches: 12, Indels: 14
0.84 0.08 0.09
Matches are distributed among these distances:
142 6 0.04
143 59 0.44
144 22 0.16
145 41 0.31
146 6 0.04
ACGTcount: A:0.27, C:0.11, G:0.08, T:0.53
Consensus pattern (144 bp):
ATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAATCTCCCTTTTTCTGAAATACTGGTTT
CCTACTATGTAAATTCTTTCAAGAGGGATTTTTATTGTTTTTGATTTTAAAATTAATAAAATATT
ATTATTTATTTCAT
Found at i:4151553 original size:145 final size:144
Alignment explanation
Indices: 4151261--4151562 Score: 305
Period size: 145 Copynumber: 2.1 Consensus size: 144
4151251 TGAAATCTCC
* *
4151261 TTTTT-TGAAATATGGAGTTTCCTACTATGTAAATTCTTTCAGGGGGATTTTTATTTTTTTTATT
1 TTTTTCTGAAATATGGAGTTTCCTACTATGTAAATTCTTTCAGAGGGATTTTTATTTTTTTGATT
* * ** *
4151325 TTTAAAATCTATCAAATATTATTATTTATTTCATATTCATTCATTTCCATAAATTTTTAATTTTT
66 TTTAAAATCTATAAAATATTATTATTTATTTCATATTAATTCATTT-CATAAATAATTAATTATT
* **
4151390 TCCTTGAATTTC-CC
130 TCCATGAATTTCAAT
* * * *
4151404 TTTTTCTGAAATACT-G-GTTTTCTACTTTGTAAATTTTTTCAAGAGGGATTTTTCTTGGTTTTT
1 TTTTTCTGAAATA-TGGAGTTTCCTACTATGTAAATTCTTTC-AGAGGGATTTTTATT--TTTTT
* *
4151467 GA-TTTTAAAAT-TAATAAAATATTATTATTTATTTCATATTAATTCAATTT-TTAAA-AATTCA
62 GATTTTTAAAATCT-ATAAAATATTATTATTTATTTCATATTAATTC-ATTTCATAAATAATTAA
*
4151528 TTCATTTCCATGAATTTTGAAT
125 TT-ATTTCCATGAA-TTTCAAT
4151550 TTTTTCTTGAAAT
1 TTTTTC-TGAAAT
4151563 TCTTTTTTTT
Statistics
Matches: 131, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
143 31 0.24
144 35 0.27
145 43 0.33
146 16 0.12
147 6 0.05
ACGTcount: A:0.28, C:0.10, G:0.08, T:0.53
Consensus pattern (144 bp):
TTTTTCTGAAATATGGAGTTTCCTACTATGTAAATTCTTTCAGAGGGATTTTTATTTTTTTGATT
TTTAAAATCTATAAAATATTATTATTTATTTCATATTAATTCATTTCATAAATAATTAATTATTT
CCATGAATTTCAAT
Found at i:4151674 original size:164 final size:165
Alignment explanation
Indices: 4151357--4151718 Score: 383
Period size: 164 Copynumber: 2.2 Consensus size: 165
4151347 TATTTATTTC
* * * *
4151357 ATATTCATTCATTTCCATAAATTTTTAATTTTTTCCTTGAATTTCCCTTTTTCTGAAATACTGGT
1 ATATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAAATTCCCTTTTTCTAAAATACGGGT
** * * ***
4151422 TTTCTACTTTGTAAATTTTTTCAAGAGGGATTTTTCTTGGTTTTTGATTTTAAAATTAATAAAAT
66 TTTCTACTCCGTAAATTTTTTCAAGAGAGATTTTTCTTGATTTAAAATTTTAAAATTAATAAAAT
* * ** * *
4151487 ATTATTATTTATTTCATATTAATTCAATTTTTAAA
131 ATTATCATTGAACTCACATTAATTCAATTTTGAAA
* * *
4151522 A-ATTCATTCATTTCCATGAATTTTGAATTTTTT-CTTGAAATT-CTTTTTTTTCAAAATACGGA
1 ATATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAAATTCCCTTTTTCT-AAAATACGG-
* * *
4151584 GTTTTCTACTCCGTAAATTTTTTC-AGAGAGATTTTTCTTGATTTAAAATTTTTTAAATTCATAT
64 GTTTTCTACTCCGTAAATTTTTTCAAGAGAGATTTTTCTTGATTTAAAA-TTTTAAAATTAATAA
* * * *
4151648 AATATTGTCATTGAACTCCCATTAATTTAGTTTTGAAA
128 AATATTATCATTGAACTCACATTAATTCAATTTTGAAA
* * * *
4151686 ATTTTAATTTATTT-CATTAATTTTGAATTTTTT
1 ATATTCATTCATTTCCATAAATTTTGAATTTTTT
4151719 TGTATATACT
Statistics
Matches: 162, Mismatches: 31, Indels: 9
0.80 0.15 0.04
Matches are distributed among these distances:
162 7 0.04
163 34 0.21
164 111 0.69
165 10 0.06
ACGTcount: A:0.29, C:0.10, G:0.08, T:0.52
Consensus pattern (165 bp):
ATATTCATTCATTTCCATAAATTTTGAATTTTTTCCTTGAAATTCCCTTTTTCTAAAATACGGGT
TTTCTACTCCGTAAATTTTTTCAAGAGAGATTTTTCTTGATTTAAAATTTTAAAATTAATAAAAT
ATTATCATTGAACTCACATTAATTCAATTTTGAAA
Found at i:4152736 original size:177 final size:177
Alignment explanation
Indices: 4152438--4152759 Score: 468
Period size: 178 Copynumber: 1.8 Consensus size: 177
4152428 TTTAGGGATT
*
4152438 TGTATGCAAAACTGATTTTTCTCTAGAAATGTTGTGCATGGCCAAAGCCAAGATATTTCTTTGCT
1 TGTATGCAAAACTGATTTTTCTCTAGAAATGTTGTGCATGGCCAAAGCCAAGATATTTCTTAGCT
* *
4152503 GTATTTTTGCTCATATTGCTAAGCTGATTTCATGCTTTAAATGATGTGTTCCCATGTTATTTTGG
66 GTAATTTTGCTCATATTGCTAAGCTGATTTCATGCTTTAAATGATGTGTTCCCATGTTA-TTTCG
* *
4152568 ATGTATAGGGACCAAAATGCAAATATCCAAAATACAGGGACTTGTATG
130 ATATACAGGGACCAAAATGCAAATATCCAAAATACAGGGACTTGTATG
* * ** *** *
4152616 TGTATGCAAAATTGATTTTTCTTTAGAAATGTTGTGTTTGGCCAAATTTAAGATGTTTCTTAGCT
1 TGTATGCAAAACTGATTTTTCTCTAGAAATGTTGTGCATGGCCAAAGCCAAGATATTTCTTAGCT
* * *
4152681 G-AATTTTGCT-ATTCTTGTTAGGCTGATTTCATGCTTTAAATGATGTGTTCCCATGTTATTTCG
66 GTAATTTTGCTCA-TATTGCTAAGCTGATTTCATGCTTTAAATGATGTGTTCCCATGTTATTTCG
4152744 ATATACAGGGACCAAA
130 ATATACAGGGACCAAA
4152760 GTGTAAATGG
Statistics
Matches: 127, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
176 19 0.15
177 51 0.40
178 57 0.45
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (177 bp):
TGTATGCAAAACTGATTTTTCTCTAGAAATGTTGTGCATGGCCAAAGCCAAGATATTTCTTAGCT
GTAATTTTGCTCATATTGCTAAGCTGATTTCATGCTTTAAATGATGTGTTCCCATGTTATTTCGA
TATACAGGGACCAAAATGCAAATATCCAAAATACAGGGACTTGTATG
Found at i:4153390 original size:159 final size:160
Alignment explanation
Indices: 4152989--4153613 Score: 886
Period size: 159 Copynumber: 3.9 Consensus size: 160
4152979 TAAAATTAAA
* * * *
4152989 TAATATTTATTTTTTCTAATCTTTTATATTCCTATGGGCATCCGTAGGGGTATAAAAGGTTTAAA
1 TAATATTTATTTTTTCTAATCTTTTATATTCCTATAGGCATCCGTAGAGGTATAAAAGATTTCAA
* *
4153054 AAACTTTTCGTATTCTTTCGAGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAACTAAAA
66 AAACCTTTCGTATTCTTTCGAGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAA--ATAA
* *
4153119 TTAAATTAAATTGATATTATCAGGATAAATTT
129 TTAAATTAAATTGATATTATTAGGATAAATTC
* *
4153151 TAATATTTATTTTTTATAATATGTTTATATTCCTAT-GGACATCCGTAGAGGTATAAAAGATTTC
1 TAATATTTATTTTTTCTAATCT-TTTATATTCCTATAGG-CATCCGTAGAGGTATAAAAGATTTC
* * * *
4153215 AAAAATCTTTCGTATTCTTTC-AGGCTTCCATTAGGGTATGAACTAGTATTTTCAAAAATAAATA
64 AAAAACCTTTCGTATTCTTTCGA-GCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATA
*
4153279 ATTAAATTAAATTGATATTATTAGGATGAATTC
128 ATTAAATTAAATTGATATTATTAGGATAAATTC
* * * *
4153312 TAATATTTATTTTTT-TAATTTTTTATATTCTTATAGGCATCCGTAGGGGTGTAAAAGATTTCAA
1 TAATATTTATTTTTTCTAATCTTTTATATTCCTATAGGCATCCGTAGAGGTATAAAAGATTTCAA
* * *
4153376 AAACCTTTCGTATTCTTTCGAACTTCCAGTAGGATACGAAATGGTATTTTCAAAAATAAATAATT
66 AAACCTTTCGTATTCTTTCGAGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATAATT
* *
4153441 AAATTAAATTGGTATTATTGGGATAAATTC
131 AAATTAAATTGATATTATTAGGATAAATTC
* *
4153471 TAATATCTATTTTTTCTAATCTTTTATATTCCTATAGGCATCCGTAGAAGTATAAAAGATTTCAA
1 TAATATTTATTTTTTCTAATCTTTTATATTCCTATAGGCATCCGTAGAGGTATAAAAGATTTCAA
* * * *
4153536 AAACCTTTCGTATTCTTTCGGGCTTCCATTAGAGTACAAAACGGTATTTTCAAAAATAAAT-A--
66 AAACCTTTCGTATTCTTTCGAGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATAATT
4153598 AAATTAAATTGA-ATTA
131 AAATTAAATTGATATTA
4153614 ATACTTTCGA
Statistics
Matches: 415, Mismatches: 42, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
156 4 0.01
157 11 0.03
159 135 0.33
160 106 0.26
161 47 0.11
162 23 0.06
163 89 0.21
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.41
Consensus pattern (160 bp):
TAATATTTATTTTTTCTAATCTTTTATATTCCTATAGGCATCCGTAGAGGTATAAAAGATTTCAA
AAACCTTTCGTATTCTTTCGAGCTTCCATTAGGGTACGAAATGGTATTTTCAAAAATAAATAATT
AAATTAAATTGATATTATTAGGATAAATTC
Found at i:4154197 original size:154 final size:155
Alignment explanation
Indices: 4153917--4154217 Score: 372
Period size: 154 Copynumber: 1.9 Consensus size: 155
4153907 TATCGAGTAC
* * * *
4153917 TTTTACGTCGAAAGAATCTCATAGGGGCATTTTCGTAATTTTTTAGAATCGAGTCCTAGGTTGTC
1 TTTTACGTCGAAAGAATCTCATAGAGGCACTTTCGTAATTTCTTAAAATCGAGTCCTAGGTTGTC
* * * * **
4153982 ATCGGGTCTGCTTTTATGCCAAAGGTAGATATTTAGGATAGGTTCATCTCATATATTATCCTCTT
66 ATCGAGTATGCTTTCATGCCAAAGGTAGATATTTAGGATAGGTTCATCCCATATAAAATCCTCTT
4154047 TAAGTCCTTTAG-GGTACCAGGTAT
131 TAAGTCCTTTAGAGGTACCAGGTAT
* * * * * *
4154071 TTTTACGTCGAAGGTATCTCTTAGAGGTACTTTGGTAATTTCTTAAAATCGAGTTCTAGGTTGTC
1 TTTTACGTCGAAAGAATCTCATAGAGGCACTTTCGTAATTTCTTAAAATCGAGTCCTAGGTTGTC
** * * * * *
4154136 A-CTGAGTATGCTTTCATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCTTTTAAAATCCTTT
66 ATC-GAGTATGCTTTCATGCCAAAGGTAGATATTTAGGATAGGTTCATCCCATATAAAATCCTCT
4154200 TTAAGTCCTTTAGAGGTA
130 TTAAGTCCTTTAGAGGTA
4154218 TTGGTTACTT
Statistics
Matches: 122, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
153 1 0.01
154 117 0.96
155 4 0.03
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.39
Consensus pattern (155 bp):
TTTTACGTCGAAAGAATCTCATAGAGGCACTTTCGTAATTTCTTAAAATCGAGTCCTAGGTTGTC
ATCGAGTATGCTTTCATGCCAAAGGTAGATATTTAGGATAGGTTCATCCCATATAAAATCCTCTT
TAAGTCCTTTAGAGGTACCAGGTAT
Done.