Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold53
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4419549
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 41486 characters in sequence are not A, C, G, or T
File 5 of 28
Found at i:776433 original size:13 final size:13
Alignment explanation
Indices: 776415--776439 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
776405 ACATTTGGTC
776415 ATGTATCGATACA
1 ATGTATCGATACA
776428 ATGTATCGATAC
1 ATGTATCGATAC
776440 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:776472 original size:20 final size:19
Alignment explanation
Indices: 776449--776487 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
776439 CTGTGCATTA
776449 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
776469 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
776488 GTTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:778461 original size:20 final size:22
Alignment explanation
Indices: 778419--778463 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
778409 GCTGTGAGTG
* *
778419 TGGGGGCTGCTCGGTTGCGACC
1 TGGGGGCTGCTCGGTCGCAACC
778441 TGGGGG-TGC-CGGTCGCAACC
1 TGGGGGCTGCTCGGTCGCAACC
778461 TGG
1 TGG
778464 TGAGTGCTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.57
21 3 0.14
22 6 0.29
ACGTcount: A:0.07, C:0.27, G:0.47, T:0.20
Consensus pattern (22 bp):
TGGGGGCTGCTCGGTCGCAACC
Found at i:782386 original size:29 final size:29
Alignment explanation
Indices: 782353--782440 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 29
782343 GACGCCTTTT
782353 CCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * ** *
782382 CC-TTT--AGTCCTCA-AAG-AGCAGGACG
1 CCTTTTAAAGCCCACACAAGTTGGTGG-CA
782407 CCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA
782436 CCTTT
1 CCTTT
782441 AGTCCTCAAA
Statistics
Matches: 41, Mismatches: 12, Indels: 12
0.63 0.18 0.18
Matches are distributed among these distances:
24 3 0.07
25 6 0.15
26 9 0.22
28 9 0.22
29 11 0.27
30 3 0.07
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (29 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:782410 original size:25 final size:25
Alignment explanation
Indices: 782382--782465 Score: 62
Period size: 25 Copynumber: 3.2 Consensus size: 25
782372 GTTGGTGGCA
782382 CCTTTAGTCCTCAAAGAGCAGGACG
1 CCTTTAGTCCTCAAAGAGCAGGACG
* * * ** *
782407 CCTTTTAAAGCCCACACAAGTTGGTGG-CA
1 CC-TTT--AGTCCTCA-AAG-AGCAGGACG
782436 CCTTTAGTCCTCAAAGAGCAGGACG
1 CCTTTAGTCCTCAAAGAGCAGGACG
782461 CCTTT
1 CCTTT
782466 TAAAGCCCAC
Statistics
Matches: 41, Mismatches: 12, Indels: 12
0.63 0.18 0.18
Matches are distributed among these distances:
24 3 0.07
25 11 0.27
26 9 0.22
28 9 0.22
29 6 0.15
30 3 0.07
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (25 bp):
CCTTTAGTCCTCAAAGAGCAGGACG
Found at i:782592 original size:116 final size:114
Alignment explanation
Indices: 782258--783434 Score: 1216
Period size: 116 Copynumber: 10.2 Consensus size: 114
782248 TCTTTTAGCC
* * *
782258 CTTCCAGTCCTTAAAGAGCAGGATGCCTTTTTTTCTTTTTTAAAGCCCACACAAGTTGGTGGCAC
1 CTTCCAGTCCTCAAAGAGCAGGA-GCC---TTCTC-CTTTTAAAGCCCACACAAGTTGGTGGCAC
* * *
782323 CTT-TAGTCCTCAAAAAGAAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
61 CTTCCAGTCCTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
782382 CCTT-TAGTCCTCAAAGAGCAGGA-----CGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-
1 -CTTCCAGTCCTCAAAGAGCAGGAGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
782440 TAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGTCA
65 CAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
782490 CTTCCCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTT
1 CTT-CCAGTCCTCAAAGAGCAGGA-GCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* * *
782554 CCTAATCCTCAAAGAGCATGATGCCTTTTAAAGCCCACACAAGTTGGTGGCA
64 CC-AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
782606 CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCTTTTTAAAGCCCACACAAGTTGGTGGCA-CTT
1 CTT-CCAGTCCTCAAAGAGCAGGA-GCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* * * *
782670 CCTAATCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACAAAAGTTAGTGGCA
64 CC-AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
782722 CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCCTTTAAAGCCCACACAAGTTGGTGGCA-CTT
1 CTT-CCAGTCCTCAAAGAGCAGGA-GCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* *
782786 CCAGTCCTCAAAGAACAGGACGCCTTCTCCTCTTAAAGCCCACACAAGTTGGTGTCA
64 CCAGTCCTCAAAGAGCAGGACG-C--CT--T-TTAAAGCCCACACAAGTTGGTGGCA
* * * * *
782843 CCTTTCAGTCCTCAAAGAGCGGGACGCCTT-TTCTTTTAAAGCCGACACAAGTTGGTGGCATCTT
1 -CTTCCAGTCCTCAAAGAGCAGGA-GCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* * *
782907 -CAGTCCTCAAAGAGCAAGATGCCTTTTCTTTTAAAGCCCACACAAGTTAGTGGCA
64 CCAGTCCTCAAAGAGCAGGACG-C----CTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
782962 CCTT-CAGTCCTCAAAGAGCGGGACGCCTT-TTCTTTTAAAGCCCACCCAAGTTGGTGGCACCTT
1 -CTTCCAGTCCTCAAAGAGCAGGA-GCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
*
783025 -CAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
64 CCAGTCCTCAAAGAGCAGGACGC-----CTTTT-AAAGCCCACACAAGTTGGTGGCA
* * * **
783081 CCTTTCAGTCCCCAAAGAGCAGGA--C--C-CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
1 -CTTCCAGTCCTCAAAGAGCAGGAGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC
* *
783141 CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
65 CAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
783191 TTTTCTAGTCCTCAAAGAGCAGGA-CAC--CT-C--TTAAAGCCCACACAAGTTGGTGGCACCTT
1 -CTTCCAGTCCTCAAAGAGCAGGAGC-CTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* * * *
783250 TCAGTCCCCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA
64 CCAGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
* *
783301 TTTTCCAGTCCTCAAAGAGCAGGA-CAC--CT-C--TTAAAGCCCACACAAGTTGGTGGCAACTT
1 -CTTCCAGTCCTCAAAGAGCAGGAGC-CTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTT
* *
783360 TCAGTCCTCAAAGAGCAGGACG-CTTTTCAAAGCCCACACGAGTTGGTGGCA
64 CCAGTCCTCAAAGAGCAGGACGCCTTTT-AAAGCCCACACAAGTTGGTGGCA
**
783411 CTTTTTAGTCCTCAAAGAGCAGGA
1 C-TTCCAGTCCTCAAAGAGCAGGA
783435 TACACTTTAT
Statistics
Matches: 950, Mismatches: 72, Indels: 75
0.87 0.07 0.07
Matches are distributed among these distances:
107 3 0.00
108 28 0.03
109 22 0.02
110 236 0.25
111 4 0.00
112 3 0.00
114 53 0.06
115 76 0.08
116 241 0.25
117 2 0.00
118 87 0.09
119 53 0.06
120 66 0.07
121 49 0.05
122 7 0.01
124 17 0.02
125 3 0.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (114 bp):
CTTCCAGTCCTCAAAGAGCAGGAGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCC
AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:782606 original size:55 final size:55
Alignment explanation
Indices: 782295--783434 Score: 1199
Period size: 55 Copynumber: 19.9 Consensus size: 55
782285 TTTTTTTCTT
* * *
782295 TTTTAAAGCCCACACAAGTTGGTGGCACCTT-TAGTCCTCAAAAAGAAGGACGCCTTTTCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACG------CC
*
782355 TTTTAAAGCCCACACAAGTTGGTGGCACCTT-TAGTCCTCAAAGAGCAGGACGCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCC
*
782409 TTTTAAAGCCCACACAAGTTGGTGGCACCTT-TAGTCCTCAAAGAGCAGGACGCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCC
* *
782463 TTTTAAAGCCCACACAAGTTGGTGTCA-CTTCCCAGTCCTCAAAGAGCAGGATGCCTTCTCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTT-CCAGTCCTCAAAGAGCAGGA------CGCC
* * *
782524 TTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAATCCTCAAAGAGCATGATGCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCC-AGTCCTCAAAGAGCAGGACGCC
782579 TTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTT-CCAGTCCTCAAAGAGCAGGACG----C-C
* *
782639 TTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAATCCTCAAAGAGCAGGATGCC
1 -TTTTAAAGCCCACACAAGTTGGTGGCACCTTCC-AGTCCTCAAAGAGCAGGACGCC
* *
782695 TTTTAAAGCCCACAAAAGTTAGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCCTTC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTT-CCAGTCCTCAAAGAGCAGGACG-C--C
*
782753 TCCCTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAACAGGACGCCTTC
1 T---TTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACG-C--C
* * *
782813 TCCTCTTAAAGCCCACACAAGTTGGTGTCACCTTTCAGTCCTCAAAGAGCGGGACGCCTTTTC
1 T--T-TTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACG-C----C
* * * *
782876 TTTTAAAGCCGACACAAGTTGGTGGCATCTT-CAGTCCTCAAAGAGCAAGATGCCTTTTC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACG-C----C
* *
782935 TTTTAAAGCCCACACAAGTTAGTGGCACCTT-CAGTCCTCAAAGAGCGGGACGCCTTTTC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACG-C----C
* *
782994 TTTTAAAGCCCACCCAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGATGCTTTTTC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGC-----C
* * *
783053 TTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACCCC
1 TTTT-AAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCC
* ** *
783109 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCC
* ** * *
783164 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACACC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCC
* * * *
783219 TCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACACC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCC
* ** *
783274 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCC
* * *
783329 TCTTAAAGCCCACACAAGTTGGTGGCAACTTTCAGTCCTCAAAGAGCAGGACG-C
1 TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCC
* * **
783383 TTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 TTTT-AAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGA
783435 TACACTTTAT
Statistics
Matches: 971, Mismatches: 77, Indels: 69
0.87 0.07 0.06
Matches are distributed among these distances:
53 3 0.00
54 86 0.09
55 400 0.41
56 10 0.01
57 1 0.00
58 3 0.00
59 139 0.14
60 158 0.16
61 167 0.17
63 4 0.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (55 bp):
TTTTAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACGCC
Found at i:783603 original size:120 final size:115
Alignment explanation
Indices: 783418--783630 Score: 261
Period size: 120 Copynumber: 1.8 Consensus size: 115
783408 GCACTTTTTA
* *
783418 GTCCTCAAAGAGCAGGATACACTTTATTTTCCTCTTTCTCTTGTCCTCAAAGAGCAGGACGTATT
1 GTCCTCAAAGAGCAGGA-ACACTTTATTTTCCTCTTTCTCTTGTCCTCAAAGAGCAAGACCTATT
*
783483 TCATTTCCCTTTTTTCCTTTGTCCTTGGAAAATGGGACGTACTCTTTTTCACTTT
65 TCA-TT--CTCTTTTCCTTTGTCCTT-GAAAATGGGACGTACTCTTTTTCACTTT
* * * *
783538 GTCCTC-AAGAAGCAGG-ACACTTTCCTTTTCTTCTCTTC-CTTGGTCTTCAAGGAGCAAGACCT
1 GTCCTCAAAG-AGCAGGAACACTTT-ATTTTCCTCT-TTCTCTT-GTCCTCAAAGAGCAAGACCT
783600 ATTTCATTCTCTTTTCCTTTGTCCTTGAAAA
62 ATTTCATTCTCTTTTCCTTTGTCCTTGAAAA
783631 GTGGACACCC
Statistics
Matches: 82, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
116 5 0.06
117 17 0.21
118 7 0.09
119 16 0.20
120 37 0.45
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (115 bp):
GTCCTCAAAGAGCAGGAACACTTTATTTTCCTCTTTCTCTTGTCCTCAAAGAGCAAGACCTATTT
CATTCTCTTTTCCTTTGTCCTTGAAAATGGGACGTACTCTTTTTCACTTT
Found at i:784167 original size:21 final size:21
Alignment explanation
Indices: 784143--784219 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
784133 AATTTATCCA
784143 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
784164 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
* *
784185 AATGTATCGATACA-TTATACA
1 AATGTATCGATACATTTGTA-G
784206 AATGTATCGATACA
1 AATGTATCGATACA
784220 AGGTCCCAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 3 0.06
21 48 0.94
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:784357 original size:13 final size:13
Alignment explanation
Indices: 784339--784364 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
784329 CATTTTTCTG
784339 TGTATCGATACAT
1 TGTATCGATACAT
784352 TGTATCGATACAT
1 TGTATCGATACAT
784365 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:784363 original size:33 final size:33
Alignment explanation
Indices: 784319--784385 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
784309 GCCACGGAAA
***
784319 TGTATCAATACATTTTTCTGTGTATCGATACAT
1 TGTATCAATACATGGATCTGTGTATCGATACAT
* *
784352 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCAATACATGGATCTGTGTATCGATACAT
784385 T
1 T
784386 TGGGAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (33 bp):
TGTATCAATACATGGATCTGTGTATCGATACAT
Found at i:786649 original size:27 final size:28
Alignment explanation
Indices: 786619--786692 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 28
786609 TTTCTTCACA
786619 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
786646 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
786674 -TGAGGGGATACTCCAACCC
1 AT-CGGGGATACTCCAACCC
786693 TGACTTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 25 0.58
28 18 0.42
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:786803 original size:52 final size:50
Alignment explanation
Indices: 786510--786898 Score: 223
Period size: 52 Copynumber: 7.4 Consensus size: 50
786500 CTCAATTCTC
* * * * *
786510 CACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAA-TTTT
1 CACAATCGGGGATACTCCAACCCCGATTTTATTCT-AAAATACCAATTTTT
* * * *
786560 CTATAATCGGGGATGCTCCAACTCCGATTTTATTTCCTAAAAACACCAATTTCTT
1 C-ACAATCGGGGATACTCCAACCCCGATTTTA-TT-CT-AAAATACCAATTT-TT
* ****
786615 CACAATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAACCCCGTTATTT
1 CACAATCGGGGATACTCCAACCCCGATTTTAT--TCTAAAATA--CCAA-----TT-TTT
** * * * ***
786673 C-TGA--GGGGATACTCCAACCCTGACTTTATTTCCAAAATATTGATTTTT
1 CACAATCGGGGATACTCCAACCCCGATTTTA-TTCTAAAATACCAATTTTT
* * *
786721 CATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAATACTAATTTTT
1 CACAATCGGGGATACTCCAACCCCGATTTTATT-CTAAAATACCAATTTTT
* * *
786772 CCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTC
1 -CACAATCGGGGATACTCCAACCCCGATTTTATTCT-AAAATACCAATTTTT
** * * *
786824 CTTTAATCGGGGATACTCCAACTCTGATTTTATTTCCAAAAATACCAATTTTT
1 C-ACAATCGGGGATACTCCAACCCCGATTTTA-TT-CTAAAATACCAATTTTT
*
786877 CACAATCGAGGATACTCCAACC
1 CACAATCGGGGATACTCCAACC
786899 TCATTATTTC
Statistics
Matches: 261, Mismatches: 51, Indels: 52
0.72 0.14 0.14
Matches are distributed among these distances:
48 4 0.02
49 4 0.02
50 3 0.01
51 67 0.26
52 92 0.35
53 31 0.12
54 24 0.09
55 20 0.08
56 5 0.02
57 4 0.02
58 6 0.02
59 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (50 bp):
CACAATCGGGGATACTCCAACCCCGATTTTATTCTAAAATACCAATTTTT
Found at i:786883 original size:104 final size:103
Alignment explanation
Indices: 786677--786898 Score: 275
Period size: 104 Copynumber: 2.1 Consensus size: 103
786667 TTATTTCTGA
* * *** *
786677 GGGGATACTCCAACCCTGACTTTATTTCCAAAATATTGATTTTTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAACACCAATTTTCCATAATCGGGGATACTCCAAC
* * * *
786742 CCCGGTTTTATTGCTAAAATACTAATTTTTCCACAATC
66 CCCGATTTTATTCCAAAAATACCAATTTTTCCACAATC
* * *
786780 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAACACCAATTTTCC-ATAATCGGGGATACTCCAA
* *
786845 CTCTGATTTTATTTCCAAAAATACCAATTTTT-CACAATC
65 CCCCGATTTTA-TTCCAAAAATACCAATTTTTCCACAATC
*
786884 GAGGATACTCCAACC
1 GGGGATACTCCAACC
786899 TCATTATTTC
Statistics
Matches: 101, Mismatches: 16, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
103 37 0.37
104 47 0.47
105 17 0.17
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (103 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAACACCAATTTTCCATAATCGGGGATACTCCAAC
CCCGATTTTATTCCAAAAATACCAATTTTTCCACAATC
Found at i:786917 original size:28 final size:28
Alignment explanation
Indices: 786881--786956 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
786871 ATTTTTCACA
* * *
786881 ATCGAGGATACTCCAACCTCATTATTTC
1 ATCGGGGATACTCCAACCCCATTACTTC
*
786909 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCATTACTTC
***
786937 CGAGGGGATACTCCAACCCC
1 ATCGGGGATACTCCAACCCC
786957 GGCTTTATTC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.24
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCATTACTTC
Found at i:786975 original size:263 final size:263
Alignment explanation
Indices: 786508--787005 Score: 802
Period size: 263 Copynumber: 1.9 Consensus size: 263
786498 TTCTCAATTC
* * *
786508 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* *
786573 TGCTCCAACTCCGATTTTATTTCCTAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCTAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
* * * *
786638 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCTGACTTTATT
131 CATTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATT
* *
786703 TCCAAAATATTGATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAATACTAAT
196 CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAATACTAAT
786768 TTT
261 TTT
*
786771 TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGG
1 TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGG
* *
786836 ATACTCCAACTCTGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAACC
65 ATACTCCAACTCCGATTTTATTTCCTAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACC
* * *
786899 TCATTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTA
130 CCATTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTA
*
786964 TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACC
194 TTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACC
787006 TCGTTATTTT
Statistics
Matches: 215, Mismatches: 18, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
262 27 0.13
263 154 0.72
264 34 0.16
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (263 bp):
TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCTAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CATTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATT
CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAATACTAAT
TTT
Found at i:787060 original size:79 final size:79
Alignment explanation
Indices: 786911--787115 Score: 241
Period size: 79 Copynumber: 2.6 Consensus size: 79
786901 ATTATTTCAT
* * *
786911 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
* * *
786976 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * * * * *
786990 TGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTCC-TAATCA
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAAT-A
787054 TCGATTTCTCACAAC
65 TCGATTTCTCACAAC
* * * *
787069 CGGGGATACTCCAGCCCCGTCATTTTCAAGGGGACACTCCAACCCCG
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
787116 TTATTATCTC
Statistics
Matches: 105, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
78 3 0.03
79 102 0.97
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:797255 original size:20 final size:20
Alignment explanation
Indices: 797226--797295 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
797216 CCCTTATTTC
797226 TATCGATACATA-TGCAGATG
1 TATCGATACATATTGCA-ATG
* *
797246 TATTGATACACATTGCAATG
1 TATCGATACATATTGCAATG
*
797266 TATCGATACAAATTGCAATG
1 TATCGATACATATTGCAATG
797286 TATCGATACA
1 TATCGATACA
797296 CTATGGAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 41 0.91
21 4 0.09
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (20 bp):
TATCGATACATATTGCAATG
Found at i:797410 original size:20 final size:22
Alignment explanation
Indices: 797341--797412 Score: 62
Period size: 22 Copynumber: 3.4 Consensus size: 22
797331 GCTACCCTTT
* * *
797341 AATTATATCGATACAA-CCATG
1 AATTGTATCGATACAAGTCAAG
* *
797362 CAATTATATCGATACAAGTTAAG
1 -AATTGTATCGATACAAGTCAAG
797385 -ATTGTATCGATAC-A-TCAAG
1 AATTGTATCGATACAAGTCAAG
797404 AATTGTATC
1 AATTGTATC
797413 AATAAATTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
19 4 0.09
20 9 0.21
21 12 0.28
22 16 0.37
23 2 0.05
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.32
Consensus pattern (22 bp):
AATTGTATCGATACAAGTCAAG
Found at i:797922 original size:33 final size:33
Alignment explanation
Indices: 797879--797974 Score: 106
Period size: 33 Copynumber: 2.8 Consensus size: 33
797869 AATGATTAAG
797879 AGGTTCTATCTAAGCCTTTGAAACGATAGTG-TA
1 AGGTTCTATCTAAGCCTTTGAAA-GATAGTGTTA
* *
797912 CAGGTT-TATCTTAGCCTTTGAAGAGAAAGTGTTA
1 -AGGTTCTATCTAAGCCTTTGAA-AGATAGTGTTA
* *
797946 AGGTTCTATCTAAGCTTTTAAAAAGATAG
1 AGGTTCTATCTAAGCCTTT-GAAAGATAG
797975 AGTTGTAAGG
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
33 26 0.50
34 24 0.46
35 2 0.04
ACGTcount: A:0.32, C:0.12, G:0.21, T:0.34
Consensus pattern (33 bp):
AGGTTCTATCTAAGCCTTTGAAAGATAGTGTTA
Found at i:801163 original size:26 final size:27
Alignment explanation
Indices: 801133--801214 Score: 80
Period size: 26 Copynumber: 3.1 Consensus size: 27
801123 TTTTCTTGAC
*
801133 ATAAAAAAATTTATATA-AATAAAAAA
1 ATAAAAAAATATATATATAATAAAAAA
* * *
801159 ATAAAATAATATATATATAATAATAAC
1 ATAAAAAAATATATATATAATAAAAAA
* * *
801186 AT-AAAAAATAGA-ATAGAATAAAAAT
1 ATAAAAAAATATATATATAATAAAAAA
801211 ATAA
1 ATAA
801215 TAATAAAAAC
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
25 12 0.27
26 24 0.53
27 9 0.20
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.27
Consensus pattern (27 bp):
ATAAAAAAATATATATATAATAAAAAA
Found at i:801313 original size:44 final size:44
Alignment explanation
Indices: 801264--801381 Score: 184
Period size: 44 Copynumber: 2.7 Consensus size: 44
801254 CACATTTCAT
*
801264 CCACCTAATTCAATTAGGTGGCATTGCATGCTTTAATCCAATTA
1 CCACCTAATTCAATTAGGTGGCATTGCATGCTATAATCCAATTA
*
801308 CCACCTAATTCAATTAGGTGGCATTGCTTGCTATAATCCAATTA
1 CCACCTAATTCAATTAGGTGGCATTGCATGCTATAATCCAATTA
* * *
801352 CCACCTAA-ACCATTAGGTGGCATTTCATGC
1 CCACCTAATTCAATTAGGTGGCATTGCATGC
801382 CTTCATGCAC
Statistics
Matches: 68, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
43 18 0.26
44 50 0.74
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (44 bp):
CCACCTAATTCAATTAGGTGGCATTGCATGCTATAATCCAATTA
Found at i:801627 original size:22 final size:22
Alignment explanation
Indices: 801575--801632 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 22
801565 TGCAAATGAA
*
801575 AAAAACAAACAAAATAGCTAGT
1 AAAAAGAAACAAAATAGCTAGT
801597 AAAAGAGAAAC-AAATAGCTA-T
1 AAAA-AGAAACAAAATAGCTAGT
801618 AGCAAAAGAAA-AAAA
1 A--AAAAGAAACAAAA
801633 CAAACGAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
21 2 0.06
22 21 0.68
23 8 0.26
ACGTcount: A:0.67, C:0.10, G:0.12, T:0.10
Consensus pattern (22 bp):
AAAAAGAAACAAAATAGCTAGT
Found at i:801669 original size:55 final size:52
Alignment explanation
Indices: 801566--801687 Score: 136
Period size: 53 Copynumber: 2.3 Consensus size: 52
801556 AAGAAAAAAT
* * *
801566 GCAAATGAAAAAAACAAACAAAATAGCTAGTAAAAGAGAAACAAATAGCTATA
1 GCAAAAGAAAAAAACAAACAAAATAGCTAGCAAAAGAGAAACAAATAGC-AAA
* ***
801619 GCAAAAGAAAAAAACAAACGAAATAGCTACAGCAAAAGAGAAATGGATAGCAAA
1 GCAAAAGAAAAAAACAAACAAAATAGCT--AGCAAAAGAGAAACAAATAGCAAA
*
801673 GCAAGAAGAATAAAA
1 GCAA-AAGAAAAAAA
801688 GTGAACGAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
53 26 0.45
54 6 0.10
55 26 0.45
ACGTcount: A:0.62, C:0.11, G:0.16, T:0.10
Consensus pattern (52 bp):
GCAAAAGAAAAAAACAAACAAAATAGCTAGCAAAAGAGAAACAAATAGCAAA
Found at i:802999 original size:20 final size:22
Alignment explanation
Indices: 802957--803002 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
802947 CATCGAGTAT
* *
802957 GAAATGTAATTTTCAAAATTTA
1 GAAATGTAATTTTAAAAACTTA
802979 GAAAT-TAA-TTTAAAAACTTA
1 GAAATGTAATTTTAAAAACTTA
802999 GAAA
1 GAAA
803003 AGTTTGGTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
21 3 0.14
22 5 0.23
ACGTcount: A:0.52, C:0.04, G:0.09, T:0.35
Consensus pattern (22 bp):
GAAATGTAATTTTAAAAACTTA
Found at i:805873 original size:39 final size:39
Alignment explanation
Indices: 805829--805905 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
805819 TGTCTAGGCC
805829 AGTGAAAATCCTACTAG-GTGTAAATTCCTATGCCTACCT
1 AGTGAAAATCCTA-TAGAGTGTAAATTCCTATGCCTACCT
*
805868 AGTGAAAATCCTATCGAGTGTAAATTCCTATGCCTACC
1 AGTGAAAATCCTATAGAGTGTAAATTCCTATGCCTACC
805906 CAAGGTGTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 2 0.06
39 34 0.94
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (39 bp):
AGTGAAAATCCTATAGAGTGTAAATTCCTATGCCTACCT
Found at i:806352 original size:20 final size:21
Alignment explanation
Indices: 806327--806379 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
806317 TTCTATGATT
806327 TGTATCGATACAATAG-TG-AA
1 TGTATCGATACAAT-GCTGAAA
806347 TGTATCGATAC-ATGTCTGAAA
1 TGTATCGATACAATG-CTGAAA
806368 TGTATCGATACA
1 TGTATCGATACA
806380 CAACCATGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 1 0.03
19 2 0.07
20 13 0.45
21 13 0.45
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (21 bp):
TGTATCGATACAATGCTGAAA
Found at i:809654 original size:52 final size:52
Alignment explanation
Indices: 809584--809704 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
809574 GAAAATTTAT
*
809584 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
809636 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
809688 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
809705 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:809717 original size:52 final size:51
Alignment explanation
Indices: 809584--809724 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
809574 GAAAATTTAT
809584 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
809636 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
809688 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
809725 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:809731 original size:13 final size:13
Alignment explanation
Indices: 809713--809737 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
809703 CAAAGATCAG
809713 TGTATCGATACAA
1 TGTATCGATACAA
809726 TGTATCGATACA
1 TGTATCGATACA
809738 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:809819 original size:13 final size:13
Alignment explanation
Indices: 809801--809825 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
809791 CAAAAAAATA
809801 TGTATCGATACAT
1 TGTATCGATACAT
809814 TGTATCGATACA
1 TGTATCGATACA
809826 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:809821 original size:33 final size:33
Alignment explanation
Indices: 809779--809845 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
809769 AGTAGCTTAA
809779 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
809812 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
809845 A
1 A
809846 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:810619 original size:49 final size:49
Alignment explanation
Indices: 810559--810898 Score: 416
Period size: 49 Copynumber: 7.1 Consensus size: 49
810549 ATATGCGGCT
810559 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
*
810608 AGCGACATTGGACTT----A-AAA-GTGCCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * * *
810651 AGCTACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * *
810700 AGCTACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * *
810749 AGCTATATTGGACTTAAAGATAAAGGTGCCAATATGGTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
* * *
810798 AACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGAT-----AAAGG-TGCCAATGTGCTGATTCAAGGCC
810853 AGCGATATTGGACTT----A-AAA-GTGCCAATGTGCTGATTCAAGGCC
1 AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
810896 AGC
1 AGC
810899 TAATATGCTG
Statistics
Matches: 261, Mismatches: 18, Indels: 30
0.84 0.06 0.10
Matches are distributed among these distances:
43 63 0.24
44 4 0.02
45 4 0.02
47 1 0.00
48 2 0.01
49 148 0.57
51 1 0.00
54 5 0.02
55 33 0.13
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (49 bp):
AGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCC
Found at i:810944 original size:66 final size:66
Alignment explanation
Indices: 810838--810966 Score: 258
Period size: 66 Copynumber: 2.0 Consensus size: 66
810828 GATGTCAATG
810838 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
810903 A
66 A
810904 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
810967 CATTGGACTT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (66 bp):
TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
A
Found at i:811010 original size:49 final size:49
Alignment explanation
Indices: 810904--811075 Score: 239
Period size: 49 Copynumber: 3.6 Consensus size: 49
810894 CCAGCTAATA
* *
810904 TGCTGATTCAAGGCCAGCGATATTGGACTT----A-AAA-GTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATG
*
810947 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATG
* *
810996 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATG
* *
811045 TGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTA
811076 GAAGGGTTGC
Statistics
Matches: 114, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
43 28 0.25
47 1 0.01
48 2 0.02
49 83 0.73
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATG
Found at i:811042 original size:164 final size:164
Alignment explanation
Indices: 810730--811064 Score: 412
Period size: 164 Copynumber: 2.0 Consensus size: 164
810720 TAAAGGTGCC
* *
810730 AATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGCCAATATGGTGATTCAAG
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTT--A-ATAAAGGTGCCAATATGCTGATTCAAG
* * * * *
810795 GCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCGATA
63 GCCAACGACATTGGACTTAAAGAT-AG--AAAGGATGCCAATGTGCTGAGTCAAGGCCAGCGACA
*
810860 TTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCT
125 TTGGACTTAAAAGTGCCAATATGCTGATTCAAGGCCAGCT
*
810900 AATATGCTGATTCAAGGCCAGCGATATTGGACTT-A-AAA-GTGCCAATGTGCTGATTCAAGGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAATAAAGGTGCCAATATGCTGATTCAAGGCC
* * *
810962 AGCTACATTGGACTTAAAGAT-G-AAGG-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGAC
66 AACGACATTGGACTTAAAGATAGAAAGGATGCCAATGTGCTGAGTCAAGGCCAGCGACATTGGAC
811024 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
131 TT----A-AAA-GTGCCAATATGCTGATTCAAGGCCAGCT
811064 A
1 A
811065 TATTGGGCTT
Statistics
Matches: 147, Mismatches: 12, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
158 34 0.23
159 4 0.03
162 2 0.01
163 3 0.02
164 67 0.46
165 3 0.02
166 1 0.01
170 33 0.22
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (164 bp):
AATATGCTGATTCAAGGCCAGCGATATTGGACTTAATAAAGGTGCCAATATGCTGATTCAAGGCC
AACGACATTGGACTTAAAGATAGAAAGGATGCCAATGTGCTGAGTCAAGGCCAGCGACATTGGAC
TTAAAAGTGCCAATATGCTGATTCAAGGCCAGCT
Found at i:811119 original size:33 final size:35
Alignment explanation
Indices: 811075--811144 Score: 117
Period size: 33 Copynumber: 2.1 Consensus size: 35
811065 TATTGGGCTT
*
811075 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTCGGCTTTAGGA
811109 AGAA-GGTTGCCACCGACTTGTGTCGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTCGGCTTTAGGA
811143 AG
1 AG
811145 GGAGAAAGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 25 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.19, G:0.36, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTCGGCTTTAGGA
Found at i:811199 original size:35 final size:35
Alignment explanation
Indices: 811149--811380 Score: 294
Period size: 33 Copynumber: 6.9 Consensus size: 35
811139 AGGAAGGGAG
*
811149 AAAGA-TGCCACGGAGTTGTGGAC-TTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GGAA
811183 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
811217 AAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-GGAA
811253 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
811287 AAA-AGTGCCACGGAGTTGTGGGCTTT------AA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
*
811315 AAAGAGTGCCACGGAGTTATGGGCTTTGAAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGGAA
*
811350 GAAG-GTGCCACGGAGTTGTGGGCTTTGAAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA
811381 AGATGCCACT
Statistics
Matches: 181, Mismatches: 4, Indels: 26
0.86 0.02 0.12
Matches are distributed among these distances:
28 5 0.03
29 22 0.12
33 46 0.25
34 45 0.25
35 26 0.14
36 14 0.08
37 23 0.13
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (35 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
Found at i:811259 original size:70 final size:69
Alignment explanation
Indices: 811149--811380 Score: 320
Period size: 70 Copynumber: 3.4 Consensus size: 69
811139 AGGAAGGGAG
*
811149 AAAGATGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAG-TGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
811213 AGGAA
65 AGGAA
811218 AAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAGTGCCACGGAGTTGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
*
811283 AGAAA
65 AGGAA
*
811288 AAAGTGCCACGGAGTTGTGGGCTTT-------AAAAAGAGTGCCACGGAGTTATGGGCTTTGAAA
1 AAAGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAA
811346 A-GAA
65 AGGAA
*
811350 GAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
1 -AAAGTGCCACGGAGTTGTGGGCTTT-AAAA
811381 AGATGCCACT
Statistics
Matches: 149, Mismatches: 5, Indels: 19
0.86 0.03 0.11
Matches are distributed among these distances:
62 30 0.20
63 28 0.19
68 17 0.11
69 6 0.04
70 68 0.46
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (69 bp):
AAAGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
GGAA
Found at i:811283 original size:29 final size:30
Alignment explanation
Indices: 811251--811404 Score: 186
Period size: 29 Copynumber: 5.0 Consensus size: 30
811241 TTGAAAAGGG
811251 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT--A
*
811283 AGAAAAAAGTGCCACGGAGTTGTGGGCTTT-
1 A-AAAAGAGTGCCACGGAGTTGTGGGCTTTA
*
811313 AAAAAGAGTGCCACGGAGTTATGGGCTTTGA
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-A
*
811344 AAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTG
1 AAA-AAG-A-GTGCCACGGAGTTGTGGGCTTTA
* *
811377 AAAAAGA-TGCCACTGACTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
811405 TGAAGGGTAA
Statistics
Matches: 109, Mismatches: 7, Indels: 15
0.83 0.05 0.11
Matches are distributed among these distances:
29 45 0.41
30 1 0.01
31 4 0.04
32 7 0.06
33 31 0.28
34 21 0.19
ACGTcount: A:0.31, C:0.14, G:0.32, T:0.23
Consensus pattern (30 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTTA
Found at i:811327 original size:62 final size:64
Alignment explanation
Indices: 811250--811404 Score: 244
Period size: 63 Copynumber: 2.5 Consensus size: 64
811240 TTTGAAAAGG
811250 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT
* * *
811313 -AAAAAGAGTGCCACGGAGTTATGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT
* *
811376 GAAAAAGA-TGCCACTGACTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT
811405 TGAAGGGTAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
62 28 0.33
63 49 0.58
64 7 0.08
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (64 bp):
GAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT
Found at i:812854 original size:1 final size:1
Alignment explanation
Indices: 812848--812970 Score: 75
Period size: 1 Copynumber: 123.0 Consensus size: 1
812838 CGGACCCCTC
* * * * * * * **
812848 TTTTTTTTTGTTTGTTTTTTTATTGTTTTTTGTTTTTTTTCTTTTGTTTTTTTTTTTTTTGGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** ** ** ** **
812913 TTCATTTTTTCGTTTTTTTTTTTTGGTTTTTCATTTTTTTTCGTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
812971 GAAGGACGCC
Statistics
Matches: 92, Mismatches: 30, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 92 1.00
ACGTcount: A:0.02, C:0.04, G:0.09, T:0.85
Consensus pattern (1 bp):
T
Found at i:812876 original size:21 final size:20
Alignment explanation
Indices: 812851--812970 Score: 102
Period size: 21 Copynumber: 5.8 Consensus size: 20
812841 ACCCCTCTTT
812851 TTTTTTGTTTGTTTTTTTATTG
1 TTTTTTGTTT-TTTTTTT-TTG
812873 TTTTTTGTTTTTTTTCTTTTG
1 TTTTTTGTTTTTTTT-TTTTG
* *
812894 TTTTTTTTTTTTTTGGTTTTTCA
1 TTTTTTGTTTTTTT--TTTTT-G
812917 TTTTTTCGTTTTTTTTTTTTG
1 TTTTTT-GTTTTTTTTTTTTG
* ** *
812938 -GTTTT-TCATTTTTTTTCG
1 TTTTTTGTTTTTTTTTTTTG
812956 TTTTTT-TTTTTTTTT
1 TTTTTTGTTTTTTTTT
812971 GAAGGACGCC
Statistics
Matches: 81, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
18 10 0.12
19 11 0.14
20 4 0.05
21 21 0.26
22 21 0.26
23 7 0.09
24 7 0.09
ACGTcount: A:0.03, C:0.04, G:0.09, T:0.84
Consensus pattern (20 bp):
TTTTTTGTTTTTTTTTTTTG
Found at i:812876 original size:22 final size:21
Alignment explanation
Indices: 812851--812970 Score: 97
Period size: 22 Copynumber: 5.6 Consensus size: 21
812841 ACCCCTCTTT
812851 TTTTTTGTTTGTTTTT-TTATTG
1 TTTTTTGTTT-TTTTTCTT-TTG
812873 TTTTTTGTTTTTTTTCTTTTG
1 TTTTTTGTTTTTTTTCTTTTG
* *
812894 TTTTTT-TTTTTTTTGGTTTTTCA
1 TTTTTTGTTTTTTTT--CTTTT-G
812917 TTTTTTCGTTTTTTTT-TTTTGG
1 TTTTTT-GTTTTTTTTCTTTT-G
** *
812939 TTTTTCATTTTTTTTCGTTT-
1 TTTTTTGTTTTTTTTCTTTTG
812959 TTTTTT-TTTTTT
1 TTTTTTGTTTTTT
812971 GAAGGACGCC
Statistics
Matches: 83, Mismatches: 8, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
19 6 0.07
20 13 0.16
21 22 0.27
22 28 0.34
23 6 0.07
25 8 0.10
ACGTcount: A:0.03, C:0.04, G:0.09, T:0.84
Consensus pattern (21 bp):
TTTTTTGTTTTTTTTCTTTTG
Found at i:812897 original size:29 final size:26
Alignment explanation
Indices: 812848--812967 Score: 93
Period size: 31 Copynumber: 4.3 Consensus size: 26
812838 CGGACCCCTC
*
812848 TTTTTTTTTGTTTGTTTTTTTATTGTTT
1 TTTTTTTTTGTTT-TTTTTTT-TCGTTT
* *
812876 TTTGTTTTTT-TTCTTTTGTTT--TTT
1 TTT-TTTTTTGTTTTTTTTTTTCGTTT
*
812900 TTTTTTTTGGTTTTTCATTTTTTCGTTT
1 TTTTTTTTTGTTTTT--TTTTTTCGTTT
812928 TTTTTTTTTGGTTTTTCATTTTTTTTCGTTT
1 TTTTTTTTT-G--TTT--TTTTTTTTCGTTT
812959 TTTTTTTTT
1 TTTTTTTTT
812968 TTTGAAGGAC
Statistics
Matches: 75, Mismatches: 6, Indels: 19
0.75 0.06 0.19
Matches are distributed among these distances:
23 5 0.07
24 10 0.13
26 6 0.08
27 6 0.08
28 16 0.21
29 7 0.09
31 23 0.31
33 2 0.03
ACGTcount: A:0.03, C:0.04, G:0.09, T:0.84
Consensus pattern (26 bp):
TTTTTTTTTGTTTTTTTTTTTCGTTT
Found at i:812902 original size:36 final size:34
Alignment explanation
Indices: 812848--812970 Score: 105
Period size: 36 Copynumber: 3.7 Consensus size: 34
812838 CGGACCCCTC
*
812848 TTTTT-TTTTGTTTGTTTTTTTATTGTTTTTTGTTT
1 TTTTTCTTTTGTTT-TTTTTTTTTTGTTTTTT-TTT
* **
812883 TTTTTCTTTTGTTTTTTTTTTTTTTGGTTTTTCAT
1 TTTTTCTTTTG-TTTTTTTTTTTTTGTTTTTTTTT
* *
812918 TTTTTC----GTTTTTTTTTTTTGGTTTTTCATTT
1 TTTTTCTTTTGTTTTTTTTTTTTTGTTTTT-TTTT
*
812949 TTTTTCGTTT-TTTTTTTTTTTT
1 TTTTTCTTTTGTTTTTTTTTTTT
812971 GAAGGACGCC
Statistics
Matches: 72, Mismatches: 9, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
30 17 0.24
31 8 0.11
34 12 0.17
35 12 0.17
36 20 0.28
37 3 0.04
ACGTcount: A:0.02, C:0.04, G:0.09, T:0.85
Consensus pattern (34 bp):
TTTTTCTTTTGTTTTTTTTTTTTTGTTTTTTTTT
Found at i:825178 original size:170 final size:165
Alignment explanation
Indices: 824847--825178 Score: 498
Period size: 164 Copynumber: 2.0 Consensus size: 165
824837 GGATTGCACC
824847 GAAGCATCCGAGTACCTCGAGATGAAATCCGAGAGAGAGAAATCACGTTTTGACCAAGACCAAAA
1 GAAGCATCCGAGTACCTCGAGATGAAATCCGAGAGAGAGAAATCACGTTTTGACCAAGACCAAAA
824912 CAGGGGACAGCATCGCGCTGTCCCGCTTTCCAAATTTATTTCGGATTGATTTGAAGGCTTAGAGG
66 CAGGGGACAGCATCGCGCTGTCCCGCTTTCCAAATTTATTTCGGATTGATTTGAAGGCTTAGAGG
824977 ATAAAAGGTACCGTTGGAAAGGTAACTCGAGGTCG
131 ATAAAAGGTACCGTTGGAAAGGTAACTCGAGGTCG
825012 GAAGCATCCGAGTACCT-GAGATGAAATCCGAG-GAGAGAAATCAACGTTTTGACCAAGA-CAAA
1 GAAGCATCCGAGTACCTCGAGATGAAATCCGAGAGAGAGAAATC-ACGTTTTGACCAAGACCAAA
825074 ACAGGGGAACACAAGCCATCGCGCTGTTCCCCGC-TTCCAAA-TTATTTCGG-TTGATTTGAAGG
65 ACAGGGG---AC-AG-CATCGCGCTG-T-CCCGCTTTCCAAATTTATTTCGGATTGATTTGAAGG
*
825136 CTTTTAGAGG-TACAAGGGTTACCGTTGGAAAGGTAACTCGAGG
123 C--TTAGAGGATA-AAAGG-TACCGTTGGAAAGGTAACTCGAGG
825179 GGGTCGATTT
Statistics
Matches: 154, Mismatches: 1, Indels: 19
0.89 0.01 0.11
Matches are distributed among these distances:
163 21 0.14
164 30 0.19
165 17 0.11
166 2 0.01
167 15 0.10
168 21 0.14
169 19 0.12
170 29 0.19
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (165 bp):
GAAGCATCCGAGTACCTCGAGATGAAATCCGAGAGAGAGAAATCACGTTTTGACCAAGACCAAAA
CAGGGGACAGCATCGCGCTGTCCCGCTTTCCAAATTTATTTCGGATTGATTTGAAGGCTTAGAGG
ATAAAAGGTACCGTTGGAAAGGTAACTCGAGGTCG
Found at i:827201 original size:13 final size:13
Alignment explanation
Indices: 827183--827208 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
827173 TACAAAGATC
827183 ATGTATCGATACA
1 ATGTATCGATACA
827196 ATGTATCGATACA
1 ATGTATCGATACA
827209 TGTGGAGGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:828571 original size:50 final size:50
Alignment explanation
Indices: 828468--828611 Score: 116
Period size: 50 Copynumber: 2.9 Consensus size: 50
828458 CTTAAAGTGG
* * * *
828468 CCAATGTGCTGATGTCAAAAGGCCAGAGTACATT-GACTTAAAGAGAAGTTGC
1 CCAATATGCTGA-GTC-TAAGGCCAG-CTACATTGGACTTAAAGAGAAATTGC
* * *
828520 CCCATGTTGCTGAGTC-AAGGCCAGCTACATTGGAC-TAAAGATAAATGTGC
1 CCAAT-ATGCTGAGTCTAAGGCCAGCTACATTGGACTTAAAGAGAAAT-TGC
* * * *
828570 CCAATATGCTGATTCTACGGCCAGCTA-ATTGGGCTTAGAGAG
1 CCAATATGCTGAGTCTAAGGCCAGCTACATTGGACTTAAAGAG
828612 TGTTTTGCCA
Statistics
Matches: 75, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
49 29 0.39
50 33 0.44
52 7 0.09
53 6 0.08
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (50 bp):
CCAATATGCTGAGTCTAAGGCCAGCTACATTGGACTTAAAGAGAAATTGC
Found at i:828841 original size:34 final size:35
Alignment explanation
Indices: 828741--828863 Score: 139
Period size: 34 Copynumber: 3.5 Consensus size: 35
828731 ACGGAGTTCT
*
828741 GTTG-GGGCTTT-AAAAGTAAAAAAGTGCCCACGGA
1 GTTGTGGGCTTTGAAAAGAAAAAAAGTG-CCACGGA
828775 GTTGTGGG-TTTGAAAAGGGAAAGAAAAAGTGCCACGGA
1 GTTGTGGGCTTTGAAAA--G-AA-AAAAAGTGCCACGGA
828813 GTTGTGGGCTTTGAAAAG-AAAAAAGTGCCACGG-
1 GTTGTGGGCTTTGAAAAGAAAAAAAGTGCCACGGA
*
828846 GTTTGTGGGCTTTAAAAA
1 G-TTGTGGGCTTTGAAAA
828864 TAGTGCCACG
Statistics
Matches: 79, Mismatches: 2, Indels: 16
0.81 0.02 0.16
Matches are distributed among these distances:
33 1 0.01
34 36 0.46
35 8 0.10
37 2 0.03
38 16 0.20
39 16 0.20
ACGTcount: A:0.34, C:0.11, G:0.33, T:0.23
Consensus pattern (35 bp):
GTTGTGGGCTTTGAAAAGAAAAAAAGTGCCACGGA
Found at i:830473 original size:1 final size:1
Alignment explanation
Indices: 830469--830579 Score: 69
Period size: 1 Copynumber: 111.0 Consensus size: 1
830459 TTTTGAAATG
* * * ** ** * **
830469 TTTTTTTGTTTTTTTTTTTCTTTTGTTTTTTTTTTTTTTGGTTTTTCATTTTTTTTGTCGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** ** ** *
830534 TTTTTTTGGTTTTTCATTTTTTTCGTTTTTTTGTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
830580 GAAGACGTCG
Statistics
Matches: 84, Mismatches: 26, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 84 1.00
ACGTcount: A:0.02, C:0.05, G:0.09, T:0.85
Consensus pattern (1 bp):
T
Found at i:830492 original size:17 final size:16
Alignment explanation
Indices: 830469--830579 Score: 116
Period size: 16 Copynumber: 6.8 Consensus size: 16
830459 TTTTGAAATG
830469 TTTTTTTGTTTTTTTT
1 TTTTTTTGTTTTTTTT
830485 TTTCTTTTGTTTTTTTT
1 TTT-TTTTGTTTTTTTT
* **
830502 TTTTTTGGTTTTTCAT
1 TTTTTTTGTTTTTTTT
*
830518 TTTTTTTGTCGTTTTTT
1 TTTTTTTGT-TTTTTTT
* **
830535 TTTTTTGGTTTTTCAT
1 TTTTTTTGTTTTTTTT
*
830551 TTTTTTCGTTTTTTTGT
1 TTTTTTTGTTTTTTT-T
830568 TTTTTTT-TTTTT
1 TTTTTTTGTTTTT
830580 GAAGACGTCG
Statistics
Matches: 77, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
16 42 0.55
17 35 0.45
ACGTcount: A:0.02, C:0.05, G:0.09, T:0.85
Consensus pattern (16 bp):
TTTTTTTGTTTTTTTT
Found at i:830506 original size:33 final size:32
Alignment explanation
Indices: 830469--830573 Score: 140
Period size: 33 Copynumber: 3.2 Consensus size: 32
830459 TTTTGAAATG
**
830469 TTTTTTT-GTTTTTTTTTTTCTTTTGTTTTTTT
1 TTTTTTTGGTTTTTCATTTT-TTTTGTTTTTTT
*
830501 TTTTTTTGGTTTTTCATTTTTTTTGTCGTTTTT
1 TTTTTTTGGTTTTTCATTTTTTTTGT-TTTTTT
*
830534 TTTTTTTGGTTTTTCATTTTTTTCGTTTTTTT
1 TTTTTTTGGTTTTTCATTTTTTTTGTTTTTTT
830566 GTTTTTTT
1 -TTTTTTT
830574 TTTTTTGAAG
Statistics
Matches: 65, Mismatches: 5, Indels: 5
0.87 0.07 0.07
Matches are distributed among these distances:
32 18 0.28
33 47 0.72
ACGTcount: A:0.02, C:0.05, G:0.10, T:0.84
Consensus pattern (32 bp):
TTTTTTTGGTTTTTCATTTTTTTTGTTTTTTT
Found at i:841322 original size:39 final size:39
Alignment explanation
Indices: 841261--841337 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
841251 GCTCTAGGCC
*
841261 AGTGAAAATTCCTACTAGGTGTAAATTCCTATGCCTACCT
1 AGTGAAAATTCCTACGAGGTGTAAATT-CTATGCCTACCT
841301 AGTGAAAA-TCCTATCGA-GTGTAAATTCTATGCCTACC
1 AGTGAAAATTCCTA-CGAGGTGTAAATTCTATGCCTACC
841338 CAAGGTGTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
38 11 0.31
39 14 0.40
40 10 0.29
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (39 bp):
AGTGAAAATTCCTACGAGGTGTAAATTCTATGCCTACCT
Found at i:841791 original size:20 final size:21
Alignment explanation
Indices: 841766--841818 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
841756 TTCTATGATT
841766 TGTATCGATACAATAG-TG-AA
1 TGTATCGATACAAT-GCTGAAA
841786 TGTATCGATAC-ATGTCTGAAA
1 TGTATCGATACAATG-CTGAAA
841807 TGTATCGATACA
1 TGTATCGATACA
841819 CAACCATGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 1 0.03
19 2 0.07
20 13 0.45
21 13 0.45
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (21 bp):
TGTATCGATACAATGCTGAAA
Found at i:845096 original size:52 final size:52
Alignment explanation
Indices: 845026--845146 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
845016 GAAAATTTAT
*
845026 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
845078 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
845130 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
845147 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:845159 original size:52 final size:51
Alignment explanation
Indices: 845026--845166 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
845016 GAAAATTTAT
845026 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
845078 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
845130 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
845167 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:845173 original size:13 final size:13
Alignment explanation
Indices: 845155--845179 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
845145 CAAAGATCAG
845155 TGTATCGATACAA
1 TGTATCGATACAA
845168 TGTATCGATACA
1 TGTATCGATACA
845180 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:845261 original size:13 final size:13
Alignment explanation
Indices: 845243--845267 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
845233 CAAAAAAATA
845243 TGTATCGATACAT
1 TGTATCGATACAT
845256 TGTATCGATACA
1 TGTATCGATACA
845268 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:845263 original size:33 final size:33
Alignment explanation
Indices: 845221--845287 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
845211 AGTAGCTTAA
845221 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
845254 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
845287 A
1 A
845288 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:846292 original size:55 final size:49
Alignment explanation
Indices: 846002--846339 Score: 412
Period size: 49 Copynumber: 7.0 Consensus size: 49
845992 GCGGCTAGCG
*
846002 ATATTGGACTT-AAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCG
1 ATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCT
*
846050 ACATTGGACTT--A-A-AAA-GTGCCAATGTGCTGATTCAAGGCCAGCT
1 ATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCT
* * *
846094 ACATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCT
1 ATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCT
* *
846143 ACATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
1 ATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCT
* * * *
846192 ATATTGGACTTAAAGATAAAGGTGCCAATATGGTGATTCAAGGCCAACG
1 ATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCT
* * *
846241 ATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCG
1 ATATTGGACTTAAAGAT-----AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCT
846296 ATATTGGACTT----A-AAA-GTGCCAATGTGCTGATTCAAGGCCAGCT
1 ATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCT
846339 A
1 A
846340 ATATGCTGAT
Statistics
Matches: 260, Mismatches: 19, Indels: 27
0.85 0.06 0.09
Matches are distributed among these distances:
43 26 0.10
44 39 0.15
45 6 0.02
46 2 0.01
47 2 0.01
48 12 0.05
49 134 0.52
51 1 0.00
54 5 0.02
55 33 0.13
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (49 bp):
ATATTGGACTTAAAGATAAAGGTGCCAATGTGCTGATTCAAGGCCAGCT
Found at i:846383 original size:66 final size:66
Alignment explanation
Indices: 846277--846405 Score: 258
Period size: 66 Copynumber: 2.0 Consensus size: 66
846267 GATGTCAATG
846277 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
846342 A
66 A
846343 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
1 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTA
846406 CATTGGACTT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (66 bp):
TGCTGATTCAAGGCCAGCGATATTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCTAAT
A
Found at i:846449 original size:49 final size:49
Alignment explanation
Indices: 846343--846514 Score: 239
Period size: 49 Copynumber: 3.6 Consensus size: 49
846333 CCAGCTAATA
* *
846343 TGCTGATTCAAGGCCAGCGATATTGGACTT----A-AAA-GTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATG
*
846386 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATG
* *
846435 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATG
* *
846484 TGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTA
846515 GAAGGGTTGC
Statistics
Matches: 114, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
43 28 0.25
47 1 0.01
48 2 0.02
49 83 0.73
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAATG
Found at i:846481 original size:164 final size:164
Alignment explanation
Indices: 846169--846503 Score: 412
Period size: 164 Copynumber: 2.0 Consensus size: 164
846159 TAAAGGTGCC
* *
846169 AATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAAGGTGCCAATATGGTGATTCAAG
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTT--A-ATAAAGGTGCCAATATGCTGATTCAAG
* * * * *
846234 GCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAATGTGCTGATTCAAGGCCAGCGATA
63 GCCAACGACATTGGACTTAAAGAT-AG--AAAGGATGCCAATGTGCTGAGTCAAGGCCAGCGACA
*
846299 TTGGACTTAAAAGTGCCAATGTGCTGATTCAAGGCCAGCT
125 TTGGACTTAAAAGTGCCAATATGCTGATTCAAGGCCAGCT
*
846339 AATATGCTGATTCAAGGCCAGCGATATTGGACTT-A-AAA-GTGCCAATGTGCTGATTCAAGGCC
1 AATATGCTGATTCAAGGCCAGCGATATTGGACTTAATAAAGGTGCCAATATGCTGATTCAAGGCC
* * *
846401 AGCTACATTGGACTTAAAGAT-G-AAGG-TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGAC
66 AACGACATTGGACTTAAAGATAGAAAGGATGCCAATGTGCTGAGTCAAGGCCAGCGACATTGGAC
846463 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCT
131 TT----A-AAA-GTGCCAATATGCTGATTCAAGGCCAGCT
846503 A
1 A
846504 TATTGGGCTT
Statistics
Matches: 147, Mismatches: 12, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
158 34 0.23
159 4 0.03
162 2 0.01
163 3 0.02
164 67 0.46
165 3 0.02
166 1 0.01
170 33 0.22
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (164 bp):
AATATGCTGATTCAAGGCCAGCGATATTGGACTTAATAAAGGTGCCAATATGCTGATTCAAGGCC
AACGACATTGGACTTAAAGATAGAAAGGATGCCAATGTGCTGAGTCAAGGCCAGCGACATTGGAC
TTAAAAGTGCCAATATGCTGATTCAAGGCCAGCT
Found at i:846558 original size:33 final size:35
Alignment explanation
Indices: 846514--846583 Score: 117
Period size: 33 Copynumber: 2.1 Consensus size: 35
846504 TATTGGGCTT
*
846514 AGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GGA
1 AGAAGGGTTGCCACCGACTTGTGTCGGCTTTAGGA
846548 AGAA-GGTTGCCACCGACTTGTGTCGGCTTTAGGA
1 AGAAGGGTTGCCACCGACTTGTGTCGGCTTTAGGA
846582 AG
1 AG
846584 GGAGAAAGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 25 0.74
34 9 0.26
ACGTcount: A:0.20, C:0.19, G:0.36, T:0.26
Consensus pattern (35 bp):
AGAAGGGTTGCCACCGACTTGTGTCGGCTTTAGGA
Found at i:846638 original size:35 final size:35
Alignment explanation
Indices: 846588--846819 Score: 294
Period size: 33 Copynumber: 6.9 Consensus size: 35
846578 AGGAAGGGAG
*
846588 AAAGA-TGCCACGGAGTTGTGGAC-TTAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GGAA
846622 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
846656 AAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-GGAA
846692 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
846726 AAA-AGTGCCACGGAGTTGTGGGCTTT------AA
1 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
*
846754 AAAGAGTGCCACGGAGTTATGGGCTTTGAAAA-GAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGGAA
*
846789 GAAG-GTGCCACGGAGTTGTGGGCTTTGAAAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA
846820 AGATGCCACT
Statistics
Matches: 181, Mismatches: 4, Indels: 26
0.86 0.02 0.12
Matches are distributed among these distances:
28 5 0.03
29 22 0.12
33 46 0.25
34 45 0.25
35 26 0.14
36 14 0.08
37 23 0.13
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (35 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAA
Found at i:846698 original size:70 final size:69
Alignment explanation
Indices: 846588--846819 Score: 320
Period size: 70 Copynumber: 3.4 Consensus size: 69
846578 AGGAAGGGAG
*
846588 AAAGATGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAG-TGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
846652 AGGAA
65 AGGAA
846657 AAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAGTGCCACGGAGTTGTGGGCTTT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
*
846722 AGAAA
65 AGGAA
*
846727 AAAGTGCCACGGAGTTGTGGGCTTT-------AAAAAGAGTGCCACGGAGTTATGGGCTTTGAAA
1 AAAGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAA
846785 A-GAA
65 AGGAA
*
846789 GAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
1 -AAAGTGCCACGGAGTTGTGGGCTTT-AAAA
846820 AGATGCCACT
Statistics
Matches: 149, Mismatches: 5, Indels: 19
0.86 0.03 0.11
Matches are distributed among these distances:
62 30 0.20
63 28 0.19
68 17 0.11
69 6 0.04
70 68 0.46
ACGTcount: A:0.33, C:0.12, G:0.34, T:0.21
Consensus pattern (69 bp):
AAAGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
GGAA
Found at i:846722 original size:29 final size:30
Alignment explanation
Indices: 846690--846843 Score: 186
Period size: 29 Copynumber: 5.0 Consensus size: 30
846680 TTGAAAAGGG
846690 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT--A
*
846722 AGAAAAAAGTGCCACGGAGTTGTGGGCTTT-
1 A-AAAAGAGTGCCACGGAGTTGTGGGCTTTA
*
846752 AAAAAGAGTGCCACGGAGTTATGGGCTTTGA
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT-A
*
846783 AAAGAAGAAGGTGCCACGGAGTTGTGGGCTTTG
1 AAA-AAG-A-GTGCCACGGAGTTGTGGGCTTTA
* *
846816 AAAAAGA-TGCCACTGACTTGTGGGCTTT
1 AAAAAGAGTGCCACGGAGTTGTGGGCTTT
846844 TGAAGGGTAA
Statistics
Matches: 109, Mismatches: 7, Indels: 15
0.83 0.05 0.11
Matches are distributed among these distances:
29 45 0.41
30 1 0.01
31 4 0.04
32 7 0.06
33 31 0.28
34 21 0.19
ACGTcount: A:0.31, C:0.14, G:0.32, T:0.23
Consensus pattern (30 bp):
AAAAAGAGTGCCACGGAGTTGTGGGCTTTA
Found at i:846766 original size:62 final size:64
Alignment explanation
Indices: 846689--846843 Score: 244
Period size: 63 Copynumber: 2.5 Consensus size: 64
846679 TTTGAAAAGG
846689 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT
* * *
846752 -AAAAAGAGTGCCACGGAGTTATGGGCTTTGAAAAGAAGAAGGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT
* *
846815 GAAAAAGA-TGCCACTGACTTGTGGGCTTT
1 GAAAAAGAGTGCCACGGAGTTGTGGGCTTT
846844 TGAAGGGTAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
62 28 0.33
63 49 0.58
64 7 0.08
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (64 bp):
GAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAAGTGCCACGGAGTTGTGGGCTTT
Found at i:848293 original size:1 final size:1
Alignment explanation
Indices: 848287--848405 Score: 67
Period size: 1 Copynumber: 119.0 Consensus size: 1
848277 CGGACCCCTC
* * * * * * * **
848287 TTTTTTTTGTTTGTTTTTTTATTGTTTTTTGTTTTTTTTCTTTTGTTTTTTTTTTTTTGGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** ** ** ** **
848352 CATTTTTTCGTTTTTTTTTGGTTTTTCATTTTTTTTCGTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
848406 GAAGGACGCC
Statistics
Matches: 88, Mismatches: 30, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 88 1.00
ACGTcount: A:0.03, C:0.04, G:0.09, T:0.84
Consensus pattern (1 bp):
T
Found at i:848305 original size:11 final size:10
Alignment explanation
Indices: 848289--848405 Score: 75
Period size: 10 Copynumber: 11.7 Consensus size: 10
848279 GACCCCTCTT
848289 TTTTTTGTTTG
1 TTTTTT-TTTG
848300 TTTTTTTATTG
1 TTTTTTT-TTG
848311 TTTTTTGTTT-
1 TTTTTT-TTTG
848321 TTTTTCTTTTG
1 TTTTT-TTTTG
848332 TTTTTTTTT-
1 TTTTTTTTTG
848341 TTTTGGTTTTT-
1 TTTT--TTTTTG
** *
848352 CATTTTTTCG
1 TTTTTTTTTG
848362 TTTTTTTTTG
1 TTTTTTTTTG
* **
848372 --GTTTTTCA
1 TTTTTTTTTG
*
848380 TTTTTTTTCG
1 TTTTTTTTTG
848390 TTTTTTTTT-
1 TTTTTTTTTG
848399 TTTTTTT
1 TTTTTTT
848406 GAAGGACGCC
Statistics
Matches: 85, Mismatches: 12, Indels: 20
0.73 0.10 0.17
Matches are distributed among these distances:
8 5 0.06
9 15 0.18
10 34 0.40
11 30 0.35
12 1 0.01
ACGTcount: A:0.03, C:0.04, G:0.09, T:0.84
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:848311 original size:15 final size:14
Alignment explanation
Indices: 848287--848402 Score: 92
Period size: 14 Copynumber: 7.9 Consensus size: 14
848277 CGGACCCCTC
848287 TTTTTTTTGTTTGTT-
1 TTTTTTTT-TTT-TTG
848302 TTTTTATTGTTTTTTG
1 TTTTT-TT-TTTTTTG
*
848318 TTTTTTTTCTTTTG
1 TTTTTTTTTTTTTG
848332 TTTTTTTTTTTTTGG
1 TTTTTTTTTTTTT-G
* *
848347 TTTTTCATTTTTTCG
1 TTTTT-TTTTTTTTG
*
848362 TTTTTTTTTGGTTT-
1 TTTTTTTTT-TTTTG
** *
848376 TTCATTTTTTTTCG
1 TTTTTTTTTTTTTG
848390 TTTTTTTTTTTTT
1 TTTTTTTTTTTTT
848403 TTTGAAGGAC
Statistics
Matches: 80, Mismatches: 14, Indels: 15
0.73 0.13 0.14
Matches are distributed among these distances:
13 2 0.03
14 38 0.47
15 23 0.29
16 16 0.20
17 1 0.01
ACGTcount: A:0.03, C:0.04, G:0.09, T:0.84
Consensus pattern (14 bp):
TTTTTTTTTTTTTG
Found at i:848314 original size:22 final size:21
Alignment explanation
Indices: 848289--848344 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
848279 GACCCCTCTT
848289 TTTTTTGTTTGTTTTT-TTATTG
1 TTTTTTGTTT-TTTTTCTT-TTG
848311 TTTTTTGTTTTTTTTCTTTTG
1 TTTTTTGTTTTTTTTCTTTTG
848332 TTTTTT-TTTTTTT
1 TTTTTTGTTTTTTT
848345 GGTTTTTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 7 0.21
21 14 0.42
22 12 0.36
ACGTcount: A:0.02, C:0.02, G:0.09, T:0.88
Consensus pattern (21 bp):
TTTTTTGTTTTTTTTCTTTTG
Found at i:848330 original size:26 final size:25
Alignment explanation
Indices: 848287--848404 Score: 116
Period size: 26 Copynumber: 4.6 Consensus size: 25
848277 CGGACCCCTC
*
848287 TTTTTTTTGTTTGTT-TTTTTATTGT
1 TTTTTTTTGTTT-TTCTTTTTTTTGT
848312 TTTTTGTTT-TTTTTCTTTTGTTTT-T
1 TTTTT-TTTGTTTTTCTTTT-TTTTGT
* *
848337 TTTTTTTTGGTTTTTCATTTTTTCGT
1 TTTTTTTT-GTTTTTCTTTTTTTTGT
848363 TTTTTTTTGGTTTTTCATTTTTTTTCGT
1 TTTTTTTT-GTTTTTC-TTTTTTTT-GT
*
848391 TTTTTTTTTTTTTT
1 TTTTTTTTGTTTTT
848405 TGAAGGACGC
Statistics
Matches: 79, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
24 5 0.06
25 21 0.27
26 32 0.41
27 11 0.14
28 10 0.13
ACGTcount: A:0.03, C:0.04, G:0.09, T:0.84
Consensus pattern (25 bp):
TTTTTTTTGTTTTTCTTTTTTTTGT
Found at i:848340 original size:36 final size:34
Alignment explanation
Indices: 848287--848405 Score: 107
Period size: 36 Copynumber: 3.4 Consensus size: 34
848277 CGGACCCCTC
* *
848287 TTTTTTTTGTTTGTTTTTTTATTGTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTATTGTTTTTTGTTT
**
848321 TTTTTCTTTTGTTTTTTTTTTT-TTGGTTTTTCATTT
1 TTTTT-TTTT-TTTTTTTTTTTATT-GTTTTTTGTTT
** *
848357 TTTCGTTTTTTTTTGGTTTTTCATT-TTTTTTCGTTT
1 TTT--TTTTTTTTTTTTTTTTTATTGTTTTTT-GTTT
848393 TTTTTTTTTTTTT
1 TTTTTTTTTTTTT
848406 GAAGGACGCC
Statistics
Matches: 68, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
34 14 0.21
35 10 0.15
36 36 0.53
37 6 0.09
38 2 0.03
ACGTcount: A:0.03, C:0.04, G:0.09, T:0.84
Consensus pattern (34 bp):
TTTTTTTTTTTTTTTTTTTTATTGTTTTTTGTTT
Found at i:858122 original size:10 final size:10
Alignment explanation
Indices: 858107--858133 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
858097 ATGTATCAAG
858107 CAAAAACAAA
1 CAAAAACAAA
858117 CAAAAACAAA
1 CAAAAACAAA
858127 CAAAAAC
1 CAAAAAC
858134 TTAGTTAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.78, C:0.22, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAACAAA
Found at i:862337 original size:52 final size:52
Alignment explanation
Indices: 862267--862387 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
862257 GAAAATTTAT
*
862267 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
862319 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
862371 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
862388 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:862400 original size:52 final size:51
Alignment explanation
Indices: 862267--862407 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
862257 GAAAATTTAT
862267 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
862319 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
862371 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
862408 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:862414 original size:13 final size:13
Alignment explanation
Indices: 862396--862420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
862386 CAAAGATCAG
862396 TGTATCGATACAA
1 TGTATCGATACAA
862409 TGTATCGATACA
1 TGTATCGATACA
862421 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:862502 original size:13 final size:13
Alignment explanation
Indices: 862484--862508 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
862474 CAAAAAAATA
862484 TGTATCGATACAT
1 TGTATCGATACAT
862497 TGTATCGATACA
1 TGTATCGATACA
862509 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:862502 original size:33 final size:33
Alignment explanation
Indices: 862462--862528 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
862452 AGTAGCTTAA
862462 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
862495 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
862528 A
1 A
862529 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:866591 original size:19 final size:19
Alignment explanation
Indices: 866552--866635 Score: 99
Period size: 19 Copynumber: 4.7 Consensus size: 19
866542 TTTCAACGAT
866552 TTGTATCGATACATAAAGTG
1 TTGTATCGATACAT-AAGTG
866572 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
866591 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
* *
866605 -TGTATCAATACATAAGTT
1 TTGTATCGATACATAAGTG
866623 TTGTATCGATACA
1 TTGTATCGATACA
866636 ATGTAAGCTA
Statistics
Matches: 56, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
13 10 0.18
15 2 0.04
17 2 0.04
19 28 0.50
20 14 0.25
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:866616 original size:32 final size:32
Alignment explanation
Indices: 866573--866640 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
866563 CATAAAGTGT
*
866573 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCAATACATAAGTGTTGTATCGATACAA
*
866605 TGTATCAATACATAAGTTTTGTATCGATACAA
1 TGTATCAATACATAAGTGTTGTATCGATACAA
866637 TGTA
1 TGTA
866641 AGCTACTGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCAATACATAAGTGTTGTATCGATACAA
Found at i:866696 original size:13 final size:13
Alignment explanation
Indices: 866678--866702 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
866668 ATTACTCAAA
866678 TGTATCGATACAT
1 TGTATCGATACAT
866691 TGTATCGATACA
1 TGTATCGATACA
866703 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:866755 original size:52 final size:52
Alignment explanation
Indices: 866711--866943 Score: 430
Period size: 52 Copynumber: 4.5 Consensus size: 52
866701 CACTGATCTT
866711 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
866763 TGTATCGATGCATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
866815 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
866867 TGTATCGATGCATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
866919 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
866944 TCATATTTTG
Statistics
Matches: 174, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 174 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:874231 original size:30 final size:30
Alignment explanation
Indices: 874126--874263 Score: 95
Period size: 30 Copynumber: 4.6 Consensus size: 30
874116 CAGTTGACTA
*
874126 TTTTGATTTCA-CTCAAGTCA-TTGTTTAAG
1 TTTTGGTTTCATC-CAAGTCATTTGTTTAAG
* * * * *
874155 TATTTGGTTTTATCGAAGTCGTTTTTATTGAG
1 T-TTTGGTTTCATCCAAGTCATTTGT-TTAAG
* * *
874187 TCTTAGTTTTATCCAAGTC-TTTGTTTAAG
1 TTTTGGTTTCATCCAAGTCATTTGTTTAAG
**
874216 TTTTTGGTTTCATCCAACCCATTT-TTGTAAG
1 -TTTTGGTTTCATCCAAGTCATTTGTT-TAAG
*
874247 TTTTGGTTTCACCCAAG
1 TTTTGGTTTCATCCAAG
874264 CTATTTTGTA
Statistics
Matches: 84, Mismatches: 18, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
29 5 0.06
30 48 0.57
31 26 0.31
32 5 0.06
ACGTcount: A:0.20, C:0.14, G:0.16, T:0.49
Consensus pattern (30 bp):
TTTTGGTTTCATCCAAGTCATTTGTTTAAG
Found at i:874753 original size:90 final size:90
Alignment explanation
Indices: 874600--874775 Score: 309
Period size: 90 Copynumber: 2.0 Consensus size: 90
874590 AAATGAGAGG
874600 GAACCACACATTCCCAATCATATCCCCTTCATTCAACCACTAGATGGTATTAATGCATCACAAAG
1 GAACCACACATTCCCAATCATATCCCCTTCATTCAACCACTAGATGGTATTAATGCATCACAAAG
874665 CTTG-ATTTCCTTGAGGCAAGGGTGC
66 -TTGAATTTCCTTGAGGCAAGGGTGC
* *
874690 GAACCACACATTCCCAATCATATCCCCTTCATTCAACCGCTAGATGGTATTAATGCATTACAAAG
1 GAACCACACATTCCCAATCATATCCCCTTCATTCAACCACTAGATGGTATTAATGCATCACAAAG
*
874755 TTGAATTTCCTTGGGGCAAGG
66 TTGAATTTCCTTGAGGCAAGG
874776 ATATCTTGAC
Statistics
Matches: 82, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
89 3 0.04
90 79 0.96
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (90 bp):
GAACCACACATTCCCAATCATATCCCCTTCATTCAACCACTAGATGGTATTAATGCATCACAAAG
TTGAATTTCCTTGAGGCAAGGGTGC
Found at i:874997 original size:30 final size:30
Alignment explanation
Indices: 874963--875037 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
874953 CCTCAGTTGC
*
874963 CTATATTCGATCAAACTTTTC-ATCATTGGA
1 CTATATTAGATCAAA-TTTTCTATCATTGGA
* * *
874993 CTATACTAGATCAAATTTTCTATCGTTTGA
1 CTATATTAGATCAAATTTTCTATCATTGGA
875023 CTATATCTAG-TCAAA
1 CTATAT-TAGATCAAA
875038 CACTTTCCAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
29 5 0.13
30 30 0.79
31 3 0.08
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.40
Consensus pattern (30 bp):
CTATATTAGATCAAATTTTCTATCATTGGA
Found at i:875071 original size:35 final size:35
Alignment explanation
Indices: 874982--875161 Score: 156
Period size: 35 Copynumber: 5.3 Consensus size: 35
874972 ATCAAACTTT
*
874982 TCATCATTGGACTATA-CTAGATCAAA-T-TTT-C-
1 TCATCATTTGACTATATCTAG-TCAAACTCTTTCCA
* *
875013 T-ATCGTTTGACTATATCTAGTCAAACACTTTCCA
1 TCATCATTTGACTATATCTAGTCAAACTCTTTCCA
* * *
875047 TCATCATTTGACTATATTTGGTCAAACTCTTTTCA
1 TCATCATTTGACTATATCTAGTCAAACTCTTTCCA
* * * * * *
875082 TCACCGTTTAACTACATCTGGTCAAACTTTTTCCA
1 TCATCATTTGACTATATCTAGTCAAACTCTTTCCA
* * * *
875117 TCTTCATTTGCCTATATCTAGTTAAACTCTTTCTA
1 TCATCATTTGACTATATCTAGTCAAACTCTTTCCA
*
875152 TCATCGTTTG
1 TCATCATTTG
875162 GCTCTTTCCA
Statistics
Matches: 116, Mismatches: 27, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
30 17 0.15
31 5 0.04
32 3 0.03
33 1 0.01
34 1 0.01
35 89 0.77
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (35 bp):
TCATCATTTGACTATATCTAGTCAAACTCTTTCCA
Found at i:875160 original size:70 final size:70
Alignment explanation
Indices: 874982--875160 Score: 183
Period size: 70 Copynumber: 2.6 Consensus size: 70
874972 ATCAAACTTT
* * *
874982 TCATCATTGGACTATA-CTAGATCAAA---TTTTC-T-ATCGTTTGACTATATCTAGTCAAACAC
1 TCATCATTTGACTATATCTAG-TCAAACTCTTTTCATCATCGTTTAACTACATCTAGTCAAACAC
875041 TTTCCA
65 TTTCCA
* * * * **
875047 TCATCATTTGACTATATTTGGTCAAACTCTTTTCATCACCGTTTAACTACATCTGGTCAAACTTT
1 TCATCATTTGACTATATCTAGTCAAACTCTTTTCATCATCGTTTAACTACATCTAGTCAAACACT
875112 TTCCA
66 TTCCA
* * *
875117 TCTTCATTTGCCTATATCTAGTTAAACTC-TTTCTATCATCGTTT
1 TCATCATTTGACTATATCTAGTCAAACTCTTTTC-ATCATCGTTT
875161 GGCTCTTTCC
Statistics
Matches: 92, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
65 20 0.22
66 2 0.02
68 5 0.05
69 5 0.05
70 60 0.65
ACGTcount: A:0.26, C:0.23, G:0.08, T:0.42
Consensus pattern (70 bp):
TCATCATTTGACTATATCTAGTCAAACTCTTTTCATCATCGTTTAACTACATCTAGTCAAACACT
TTCCA
Found at i:875168 original size:20 final size:20
Alignment explanation
Indices: 875143--875181 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
875133 TCTAGTTAAA
*
875143 CTCTTTCTATCATCGTTTGG
1 CTCTTTCCATCATCGTTTGG
875163 CTCTTTCCATCATCGTTTG
1 CTCTTTCCATCATCGTTTG
875182 ACCGTATCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.28, G:0.13, T:0.49
Consensus pattern (20 bp):
CTCTTTCCATCATCGTTTGG
Found at i:875277 original size:44 final size:44
Alignment explanation
Indices: 875207--875593 Score: 250
Period size: 44 Copynumber: 8.8 Consensus size: 44
875197 ATCTGCCCCC
* * *
875207 TTTTTGTTTGACATATGGTTAGCACCTTGGTCAAACTCTTTTCA
1 TTTTGGTTTGACATATGGTTACCACCTTGGTCAAATTCTTTTCA
* * *
875251 TTTTGGTCTGACATATGATTACCACCTTGGTCAGATTCTTTTCA
1 TTTTGGTTTGACATATGGTTACCACCTTGGTCAAATTCTTTTCA
* * * * * *** *
875295 TTCTGATTTGCCGTATGGTTACCACCTTGGTTAAA-TCTACCCC
1 TTTTGGTTTGACATATGGTTACCACCTTGGTCAAATTCTTTTCA
** * *
875338 TTTTCTATTTGACGTATGGTTACCAACC-TGGTCAAACTCTTCTT-A
1 TTTT-GGTTTGACATATGGTTACC-ACCTTGGTCAAATTCTT-TTCA
* * * *
875383 TTTTAGTTTGACTTATGGTTACCACCCTAGT-AAGATTCTTTTCA
1 TTTTGGTTTGACATATGGTTACCACCTTGGTCAA-ATTCTTTTCA
* * * *** *
875427 TTCTGATTTGAC-TCATAGTTACCACCTTGGT-AAA-TCTGCCCC
1 TTTTGGTTTGACAT-ATGGTTACCACCTTGGTCAAATTCTTTTCA
* ** * *
875469 TTTCTTGTTTGATGTATGGTTACCACCGTGGTTAAATTCTTCTT-A
1 TTT-TGGTTTGACATATGGTTACCACCTTGGTCAAATTCTT-TTCA
* * * *
875514 TTTCGGTCTGACATATGGTTACCACCCTAGTCAAATTCTTTTCA
1 TTTTGGTTTGACATATGGTTACCACCTTGGTCAAATTCTTTTCA
* * ** * *
875558 TTTTGATTTAATGTATAGTTACCACCTTGGTTAAAT
1 TTTTGGTTTGACATATGGTTACCACCTTGGTCAAAT
875594 CTGCCACTTT
Statistics
Matches: 260, Mismatches: 69, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
42 6 0.02
43 39 0.15
44 199 0.77
45 16 0.06
ACGTcount: A:0.21, C:0.21, G:0.15, T:0.43
Consensus pattern (44 bp):
TTTTGGTTTGACATATGGTTACCACCTTGGTCAAATTCTTTTCA
Found at i:875888 original size:131 final size:129
Alignment explanation
Indices: 875628--876091 Score: 359
Period size: 131 Copynumber: 3.6 Consensus size: 129
875618 GTGGTGTTTG
* * * * * * * *
875628 ACATATGGTTACCACCCTCGTCAAACTATTCTTATTTTGGTCTAACGTATGGTTACCACTTTGGT
1 ACATATGGTTACCACCCTAGTCAAACTCTTCTCATTTCGGTTTGACGTATGATTACCACCTTGGT
* * * * * * * * *
875693 AAGATT-TTTTCATTCTAATTTGATGTATGATTACTACCCTGGTCAAATTTGCCTTCTTCTTATT
66 CAGATTCTTTT-ATTCT-ATTTGATGCATGGTTACCACCCTGGTCAAGTCT-CTTTTTTCCTATT
875757 TA
128 TA
*
875759 ACATATGGTTACCACCCTAGTCAAACTCTTCTCATTTCGGTTTGATGTATGATTACCACCTTGGT
1 ACATATGGTTACCACCCTAGTCAAACTCTTCTCATTTCGGTTTGACGTATGATTACCACCTTGGT
* * *
875824 CAGATTCTTTTGTTCTGATTTGATGCATGGTTACCACCTTGGTGAAGTCTACTTTTTTCCTATTT
66 CAGATTCTTTTATTCT-ATTTGATGCATGGTTACCACCCTGGTCAAGTCT-CTTTTTTCCTATTT
*
875889 G
129 A
** * * * * * * * *
875890 AGGTATGGTAACAACCCTAGTCAAACTCTTTTTAAGTT-AGATTGACATATGGA-TACCACCTTG
1 ACATATGGTTACCACCCTAGTCAAACTC-TTCTCATTTCGGTTTGACGTAT-GATTACCACCTTG
* * *
875953 GTCAGACTCCTTTTATTCTTTCTTGA--CATGTGGTTACCACCCTAGTCAAG-CTCTTTTCATTC
64 GTCAGA-TTCTTTTATTCTAT-TTGATGCA--TGGTTACCACCCTGGTCAAGTCTCTTTT--TTC
**
876015 CCGTTTA
123 CTATTTA
* * * * * *
876022 ACGTATGATTACCACTCTGGTCAAACAT-TTCTCATTTCGGTTTGGCG-ATGGTTACCACCTTGG
1 ACATATGGTTACCACCCTAGTCAAAC-TCTTCTCATTTCGGTTTGACGTATGATTACCACCTTGG
876085 TCAGATT
65 TCAGATT
876092 TTTATTATGT
Statistics
Matches: 262, Mismatches: 59, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
130 9 0.03
131 177 0.68
132 75 0.29
133 1 0.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (129 bp):
ACATATGGTTACCACCCTAGTCAAACTCTTCTCATTTCGGTTTGACGTATGATTACCACCTTGGT
CAGATTCTTTTATTCTATTTGATGCATGGTTACCACCCTGGTCAAGTCTCTTTTTTCCTATTTA
Found at i:878124 original size:12 final size:12
Alignment explanation
Indices: 878107--878136 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
878097 GTCATAAAAT
*
878107 TGGTGAGTCATA
1 TGGTGAGCCATA
878119 TGGTGAGCCATA
1 TGGTGAGCCATA
878131 TGGTGA
1 TGGTGA
878137 ATTAAATGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.10, G:0.37, T:0.30
Consensus pattern (12 bp):
TGGTGAGCCATA
Found at i:881422 original size:78 final size:78
Alignment explanation
Indices: 881287--881442 Score: 206
Period size: 78 Copynumber: 2.0 Consensus size: 78
881277 AAAAAGTTTT
* * * *
881287 ATTTTGGGGAAATTCCATTACCACTCTTCTGAGGGGATACTCTAACCTTGATCTTTAATAAACTC
1 ATTTTAGGGAAATTCCATTACCACTCTTCTGAGGGGATACTCTAACCCTGATATTTAAAAAACTC
*
881352 AAACTTTTTCTTC
66 AAACTTTTCCTTC
* * * **
881365 ATTTTAGGGAAATTCCA-TCCTCAGTCTTTTGAGGGGATGTTCTAACCCTGATATTTAAAAAACT
1 ATTTTAGGGAAATTCCATTAC-CACTCTTCTGAGGGGATACTCTAACCCTGATATTTAAAAAACT
881429 CAAACTTTTCCTTC
65 CAAACTTTTCCTTC
881443 GTACAATGTT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
77 2 0.03
78 65 0.97
ACGTcount: A:0.28, C:0.21, G:0.13, T:0.38
Consensus pattern (78 bp):
ATTTTAGGGAAATTCCATTACCACTCTTCTGAGGGGATACTCTAACCCTGATATTTAAAAAACTC
AAACTTTTCCTTC
Found at i:889327 original size:21 final size:22
Alignment explanation
Indices: 889303--889343 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
889293 GACATGCTGT
889303 AAATGCATGAAACAT-AGCTCA
1 AAATGCATGAAACATGAGCTCA
*
889324 AAATGCATGAATCATGAGCT
1 AAATGCATGAAACATGAGCT
889344 GTTAACATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.22
Consensus pattern (22 bp):
AAATGCATGAAACATGAGCTCA
Found at i:890920 original size:31 final size:33
Alignment explanation
Indices: 890877--891055 Score: 179
Period size: 33 Copynumber: 5.5 Consensus size: 33
890867 ACCTCTTCGT
* *
890877 AAGCCCATACAAGTTGGTGGCAT-C-TTATTCA
1 AAGCCCACACAAGTTGGTGGCATCCTTTTTTCA
890908 AAGCCCACACAAGTTGGTGGCATCCTTTTTTCA
1 AAGCCCACACAAGTTGGTGGCATCCTTTTTTCA
* * *
890941 AAGCCCACACAAGTTAGAGGCATCCTTTTTTTTTTA
1 AAGCCCACACAAGTTGGTGGCATCC---TTTTTTCA
*
890977 AAGCCCATACAAGTTGGTGGCATCC-TTTTTCAA
1 AAGCCCACACAAGTTGGTGGCATCCTTTTTTC-A
* * * * *
891010 AAGCCCATACGAGTCGATGGCAACC-TTTTT-A
1 AAGCCCACACAAGTTGGTGGCATCCTTTTTTCA
*
891041 AAGCCCACATAAGTT
1 AAGCCCACACAAGTT
891056 AATGGTAACC
Statistics
Matches: 125, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
31 34 0.27
32 6 0.05
33 56 0.45
36 29 0.23
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (33 bp):
AAGCCCACACAAGTTGGTGGCATCCTTTTTTCA
Found at i:890946 original size:33 final size:32
Alignment explanation
Indices: 890817--891096 Score: 187
Period size: 32 Copynumber: 8.6 Consensus size: 32
890807 TTTTTAAATT
*
890817 CCACACAAGTTGGTGGCAACCTCTTCTT--AAGC
1 CCACACAAGTTGGTGGCATCCT-TT-TTCAAAGC
* * * * *
890849 CCACGCGAA-TTGGTGGTAACC-TCTTCGTAAGC
1 CCACAC-AAGTTGGTGGCATCCTTTTTC-AAAGC
* *
890881 CCATACAAGTTGGTGGCAT-CTTATTCAAAGC
1 CCACACAAGTTGGTGGCATCCTTTTTCAAAGC
890912 CCACACAAGTTGGTGGCATCCTTTTTTCAAAGC
1 CCACACAAGTTGGTGGCATCC-TTTTTCAAAGC
* * *
890945 CCACACAAGTTAGAGGCATCCTTTTTTTTTTAAAGC
1 CCACACAAGTTGGTGGCATCC----TTTTTCAAAGC
*
890981 CCATACAAGTTGGTGGCATCCTTTTTCAAAAGC
1 CCACACAAGTTGGTGGCATCCTTTTTC-AAAGC
* * * * *
891014 CCATACGAGTCGATGGCAACCTTTTT-AAAGC
1 CCACACAAGTTGGTGGCATCCTTTTTCAAAGC
* ** * * * *
891045 CCACATAAGTTAATGGTAACC-CTCTCAAAAGC
1 CCACACAAGTTGGTGGCATCCTTTTTC-AAAGC
*
891077 CCACACAAGTTGGTGACATC
1 CCACACAAGTTGGTGGCATC
891097 TCCTTCTGAG
Statistics
Matches: 198, Mismatches: 36, Indels: 28
0.76 0.14 0.11
Matches are distributed among these distances:
29 2 0.01
30 3 0.02
31 45 0.23
32 61 0.31
33 58 0.29
36 29 0.15
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (32 bp):
CCACACAAGTTGGTGGCATCCTTTTTCAAAGC
Found at i:890980 original size:36 final size:36
Alignment explanation
Indices: 890877--891006 Score: 150
Period size: 36 Copynumber: 3.8 Consensus size: 36
890867 ACCTCTTCGT
* *
890877 AAGCCCATACAAGTTGGTGGCAT-C----TTATTCA
1 AAGCCCACACAAGTTGGTGGCATCCTTTTTTTTTCA
890908 AAGCCCACACAAGTTGGTGGCATCC---TTTTTTCA
1 AAGCCCACACAAGTTGGTGGCATCCTTTTTTTTTCA
* * *
890941 AAGCCCACACAAGTTAGAGGCATCCTTTTTTTTTTA
1 AAGCCCACACAAGTTGGTGGCATCCTTTTTTTTTCA
*
890977 AAGCCCATACAAGTTGGTGGCATCCTTTTT
1 AAGCCCACACAAGTTGGTGGCATCCTTTTT
891007 CAAAAGCCCA
Statistics
Matches: 86, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
31 22 0.26
32 1 0.01
33 29 0.34
36 34 0.40
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (36 bp):
AAGCCCACACAAGTTGGTGGCATCCTTTTTTTTTCA
Found at i:890994 original size:100 final size:100
Alignment explanation
Indices: 890877--891056 Score: 265
Period size: 100 Copynumber: 1.8 Consensus size: 100
890867 ACCTCTTCGT
* * *
890877 AAGCCCATACAAGTTGGTGGCAT-CTTATTC-AAAGCCCACACAAGTTGGTGGCATCCTTTTTTC
1 AAGCCCATACAAGTTGGTGGCATCCTTATTCAAAAGCCCACACAAGTCGATGGCAACC-TTTTT-
890940 AAAGCCCACACAAGTTAGAGGCATCCTTTTTTTTTTA
64 AAAGCCCACACAAGTTAGAGGCATCCTTTTTTTTTTA
* * *
890977 AAGCCCATACAAGTTGGTGGCATCCTTTTTCAAAAGCCCATACGAGTCGATGGCAACCTTTTTAA
1 AAGCCCATACAAGTTGGTGGCATCCTTATTCAAAAGCCCACACAAGTCGATGGCAACCTTTTTAA
*
891042 AGCCCACATAAGTTA
66 AGCCCACACAAGTTA
891057 ATGGTAACCC
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
100 39 0.55
101 11 0.15
102 21 0.30
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (100 bp):
AAGCCCATACAAGTTGGTGGCATCCTTATTCAAAAGCCCACACAAGTCGATGGCAACCTTTTTAA
AGCCCACACAAGTTAGAGGCATCCTTTTTTTTTTA
Found at i:891037 original size:69 final size:69
Alignment explanation
Indices: 890907--891039 Score: 189
Period size: 69 Copynumber: 1.9 Consensus size: 69
890897 CATCTTATTC
*
890907 AAAGCCCACACAAGTTGGTGGCATCCTTTTTTCAAAGCCCACACAAGTTAGAGGCATCCTTTTTT
1 AAAGCCCACACAAGTTGGTGGCATCCTTTTTTCAAAGCCCACACAAGTTAGAGGCAACCTTTTTT
890972 TTTT
66 TTTT
* * * *
890976 AAAGCCCATACAAGTTGGTGGCATCC-TTTTTCAAAAGCCCATACGAG-TCGATGGCAACCTTTT
1 AAAGCCCACACAAGTTGGTGGCATCCTTTTTTC-AAAGCCCACACAAGTTAGA-GGCAACCTTTT
891039 T
64 T
891040 AAAGCCCACA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
68 9 0.16
69 48 0.84
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (69 bp):
AAAGCCCACACAAGTTGGTGGCATCCTTTTTTCAAAGCCCACACAAGTTAGAGGCAACCTTTTTT
TTTT
Found at i:891354 original size:155 final size:155
Alignment explanation
Indices: 891171--891479 Score: 399
Period size: 155 Copynumber: 2.0 Consensus size: 155
891161 CTGATGTCAT
* * * * * * *
891171 TGGCCCTGAATTAGTACATTGGCAACCTTCA-TCGTTAAGTCCAATTTTGCTAGTCGGGAATCAG
1 TGGCCCTAAATTAGCACATTAGCAACCTTCACT-GTTAAGTCCAATATCGCTAGCCAGGAATCAG
* * *
891235 CATATTGGCACATTTTATCATCTCTATGTCCAACA-ATGCTAGCCTTGAATCT-GCATATTGGCA
65 CATATTGGCACATTTTATCATCTCTAAGTCCAA-AGATGCTAGCCTTGAAT-TAGCACATTAGCA
891298 CCCTAATTGTCTTTAAGTCCAATGTCGC
128 CCCTAATTGTCTTTAAGTCCAATGTCGC
* *
891326 TGGCCCTAAATTAGCACATTAGCTACCTTCACTGTTAAGTCCAATATCGCTAGCCATGAATCAGC
1 TGGCCCTAAATTAGCACATTAGCAACCTTCACTGTTAAGTCCAATATCGCTAGCCAGGAATCAGC
* * * * * *
891391 ATATTGGCACCTTTTATCATCTTTAAGTCCAAAGTTGTTGGCCTTGAATTAGCACATTAGTACCC
66 ATATTGGCACATTTTATCATCTCTAAGTCCAAAGATGCTAGCCTTGAATTAGCACATTAGCACCC
*
891456 TTATTGTCTTTAAGTCCAATGTCG
131 TAATTGTCTTTAAGTCCAATGTCG
891480 TGACCCTGAA
Statistics
Matches: 132, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
154 2 0.02
155 129 0.98
156 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.34
Consensus pattern (155 bp):
TGGCCCTAAATTAGCACATTAGCAACCTTCACTGTTAAGTCCAATATCGCTAGCCAGGAATCAGC
ATATTGGCACATTTTATCATCTCTAAGTCCAAAGATGCTAGCCTTGAATTAGCACATTAGCACCC
TAATTGTCTTTAAGTCCAATGTCGC
Found at i:891541 original size:155 final size:155
Alignment explanation
Indices: 891228--891573 Score: 371
Period size: 155 Copynumber: 2.2 Consensus size: 155
891218 TGCTAGTCGG
* * * *
891228 GAATCAGCATATTGGCACATTTTATCATCTCTATGTCCAACAATGCTAGCCTTGAATCTGCATAT
1 GAATCAGCATATTGGCACCTTTTATCATCTTTAAGTCCAACAATGCTAGCCTTGAATCTGCACAT
* * * *
891293 TGGCACCCTAATTGTCTTTAAGTCCAATGTCGCTGGCCCTAAATTAGCACATTAGCTACCTTCAC
66 TAGCACCCTAATTGTCTTTAAGTCCAATGTCGCTGACCCTAAATCAACACATTAGCTACCTTCAC
*
891358 TGTTAAGTCCAATATCGCTAGCCAT
131 TGTTAAGTCCAATATCACTAGCCAT
* * *
891383 GAATCAGCATATTGGCACCTTTTATCATCTTTAAGTCCAA-AGTTGTTGGCCTTGAAT-TAGCAC
1 GAATCAGCATATTGGCACCTTTTATCATCTTTAAGTCCAACA-ATGCTAGCCTTGAATCT-GCAC
* * * * *
891446 ATTAGTACCCTTATTGTCTTTAAGTCCAATGTCG-TGACCCTGAATCAACATATT-GGTAACCTT
64 ATTAGCACCCTAATTGTCTTTAAGTCCAATGTCGCTGACCCTAAATCAACACATTAGCT-ACCTT
* * * * *
891509 CATCT-TTATGTCCAAATGTCACTGGTCTT
128 CA-CTGTTAAGTCC-AATATCACTAGCCAT
* * **
891538 GAATCAGCACATTGGCACC-CTTATTGTCTTTAAGTC
1 GAATCAGCATATTGGCACCTTTTATCATCTTTAAGTC
891574 TAATGTCATT
Statistics
Matches: 160, Mismatches: 26, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
153 2 0.01
154 45 0.28
155 113 0.71
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.34
Consensus pattern (155 bp):
GAATCAGCATATTGGCACCTTTTATCATCTTTAAGTCCAACAATGCTAGCCTTGAATCTGCACAT
TAGCACCCTAATTGTCTTTAAGTCCAATGTCGCTGACCCTAAATCAACACATTAGCTACCTTCAC
TGTTAAGTCCAATATCACTAGCCAT
Found at i:891596 original size:52 final size:52
Alignment explanation
Indices: 891276--892076 Score: 270
Period size: 52 Copynumber: 15.5 Consensus size: 52
891266 AACAATGCTA
* * * **
891276 GCCTTGAATCTGCATATTGGCACCCTAATTGTCTTTAAGTCCAATGTCGCTG
1 GCCTTGAATCAGCACATTGGCACCCTTATTGTCTTTAAGTCCAATGTCATTG
* * * * * * ** *
891328 GCCCTAAATTAGCACATTAGCTA-CCTTCACTG---TTAAGTCCAATATCGCTA
1 GCCTTGAATCAGCACATTGGC-ACCCTT-ATTGTCTTTAAGTCCAATGTCATTG
* * * ** * **
891378 GCCATGAATCAGCATATTGGCACCTTTTATCATCTTTAAGTCCAAAGTTGTTG
1 GCCTTGAATCAGCACATTGGCACC-CTTATTGTCTTTAAGTCCAATGTCATTG
* * * *
891431 GCCTTGAATTAGCACATTAGTACCCTTATTGTCTTTAAGTCCAATGTC-GTG
1 GCCTTGAATCAGCACATTGGCACCCTTATTGTCTTTAAGTCCAATGTCATTG
* * * * * * * *
891482 ACCCTGAATCAACATATTGGTAACCTTCA---TCTTTATGTCCAAATGTCACTG
1 GCCTTGAATCAGCACATTGGCACCCTT-ATTGTCTTTAAGTCC-AATGTCATTG
* *
891533 GTCTTGAATCAGCACATTGGCACCCTTATTGTCTTTAAGTCTAATGTCATTG
1 GCCTTGAATCAGCACATTGGCACCCTTATTGTCTTTAAGTCCAATGTCATTG
* * * * *
891585 GCCTT-ACATCAGCACATTGACAACCTTCA---TCGTTAAGTCCAATATCACTG
1 GCCTTGA-ATCAGCACATTGGCACCCTT-ATTGTCTTTAAGTCCAATGTCATTG
* * * * * * *** * * ** *
891635 GTCATGAATAAACATATTGGCACCTTTTAACATCTTTTAGTGCAATGTCGCTA
1 GCCTTGAATCAGCACATTGGCACC-CTTATTGTCTTTAAGTCCAATGTCATTG
* * * * * ** * * **
891688 GCCCTAAATCAGTACATTAGCA-AC--ATTCACCATTAAGTCCAATATCGCTG
1 GCCTTGAATCAGCACATTGGCACCCTTATT-GTCTTTAAGTCCAATGTCATTG
* * * * ** ** * *
891738 GTCATGAATCAGCATACTGGCAGCTTTTATCATCTTCAAGTCCAATGTCATTA
1 GCCTTGAATCAGCACATTGGCA-CCCTTATTGTCTTTAAGTCCAATGTCATTG
* * **
891791 GCCTTGAATCAACACATTGGCACCCTTATTATCTTTAAGTCCAATGTCGCTG
1 GCCTTGAATCAGCACATTGGCACCCTTATTGTCTTTAAGTCCAATGTCATTG
* * * * ** *
891843 GCCTTAAATCAGCACATTGGTAACCTTCA---TCTTTAAGTCCAAATATCGCTA
1 GCCTTGAATCAGCACATTGGCACCCTT-ATTGTCTTTAAGTCC-AATGTCATTG
* * ** * ** *
891894 GCCTTGAATCAACACATTGGCACCTTTATCATCTTTAAGTTCAATGTCGCTA
1 GCCTTGAATCAGCACATTGGCACCCTTATTGTCTTTAAGTCCAATGTCATTG
* * ** * * ** * ** *
891946 GCCATAAATCAATACATTAGCACCTTTATCATCTTTAAGTTCAATGTCGCTA
1 GCCTTGAATCAGCACATTGGCACCCTTATTGTCTTTAAGTCCAATGTCATTG
* * * * * ** * *** *
891998 GCCATAAATCAACACATTAGCACCTTTATCATCATTAAGTCTGGTGTCATAG
1 GCCTTGAATCAGCACATTGGCACCCTTATTGTCTTTAAGTCCAATGTCATTG
* * *
892050 GCCTTAAATCAGCACATTTGCAACCTT
1 GCCTTGAATCAGCACATTGGCACCCTT
892077 CACCGTTAAG
Statistics
Matches: 565, Mismatches: 154, Indels: 60
0.73 0.20 0.08
Matches are distributed among these distances:
49 12 0.02
50 117 0.21
51 80 0.14
52 236 0.42
53 118 0.21
54 2 0.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.33
Consensus pattern (52 bp):
GCCTTGAATCAGCACATTGGCACCCTTATTGTCTTTAAGTCCAATGTCATTG
Found at i:891633 original size:102 final size:101
Alignment explanation
Indices: 891407--892015 Score: 364
Period size: 103 Copynumber: 5.9 Consensus size: 101
891397 GCACCTTTTA
*** * * * * **
891407 TCATCTTTAAGTCCAA-AGTTGTTGGCCTTGAATTAGCACATTAGTACCCTTATTGTCTTTAAGT
1 TCATCTTTAAGTCCAATA-TCACTGGTCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGT
* * * * * **
891471 CCAATGTCGTGACCCTGAATCAACATATTGGTAACCT
65 CCAATGTCATTAGCCTTAATCAACACATTGACAACCT
* * **
891508 TCATCTTTATGTCCAAATGTCACTGGTCTTGAATCAGCACATTGGCACCCTTATTGTCTTTAAGT
1 TCATCTTTAAGTCC-AATATCACTGGTCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGT
* * *
891573 CTAATGTCATTGGCCTTACATCAGCACATTGACAACCT
65 CCAATGTCATTAGCCTTA-ATCAACACATTGACAACCT
* * * * * * * *
891611 TCATCGTTAAGTCCAATATCACTGGTCATGAATAAACATATTGGCACCTTTTAACATCTTTTAGT
1 TCATCTTTAAGTCCAATATCACTGGTCTTGAATCAGCACATTGGCACC-CTTATCATCTTTAAGT
* ** * ** *
891676 GCAATGTCGCTAGCCCTAAATCAGTACATT-AGCAACAT
65 CCAATGTCATTAG-CCTTAATCAACACATTGA-CAACCT
* * * * * * ** *
891714 TCACCATTAAGTCCAATATCGCTGGTCATGAATCAGCATACTGGCAGCTTTTATCATCTTCAAGT
1 TCATCTTTAAGTCCAATATCACTGGTCTTGAATCAGCACATTGGCA-CCCTTATCATCTTTAAGT
* *
891779 CCAATGTCATTAGCCTTGAATCAACACATTGGCACCCTT
65 CCAATGTCATTAGCCTT-AATCAACACATTGACAACC-T
* * * * * * *
891818 ATTATCTTTAAGTCCAATGTCGCTGGCCTTAAATCAGCACATTGGTAACC-T-TCATCTTTAAGT
1 -TCATCTTTAAGTCCAATATCACTGGTCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGT
* ** *
891881 CCAAATATCGCTAGCCTTGAATCAACACATTGGC-ACCTTT
65 CC-AATGTCATTAGCCTT-AATCAACACATTGACAACC--T
* * * * * * * ** * *
891921 ATCATCTTTAAGTTCAATGTCGCTAGCCATAAATCAATACATTAGCACCTTTATCATCTTTAAGT
1 -TCATCTTTAAGTCCAATATCACTGGTCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGT
* ** *
891986 TCAATGTCGCTAGCCATAAATCAACACATT
65 CCAATGTCATTAGCC-TTAATCAACACATT
892016 AGCACCTTTA
Statistics
Matches: 403, Mismatches: 89, Indels: 29
0.77 0.17 0.06
Matches are distributed among these distances:
101 13 0.03
102 101 0.25
103 208 0.52
104 31 0.08
105 50 0.12
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (101 bp):
TCATCTTTAAGTCCAATATCACTGGTCTTGAATCAGCACATTGGCACCCTTATCATCTTTAAGTC
CAATGTCATTAGCCTTAATCAACACATTGACAACCT
Found at i:891836 original size:155 final size:155
Alignment explanation
Indices: 891611--892019 Score: 453
Period size: 155 Copynumber: 2.6 Consensus size: 155
891601 TTGACAACCT
* * * * * * *
891611 TCATCGTT-AAGTCCAATATCACTGGTCATGAATAAACATATTGGCACCTTTTAACATCTTTTAG
1 TCATC-TTCAAGTCCAATGTCACTAGCCATGAATCAACACATTGGCACC-TTTATCATCTTTAAG
* * * *
891675 TGCAATGTCGCTAGCCCTAAATCAGTACATTAGCAACATTCACCATTAAGTCC-AATATCGCTGG
64 TCCAATGTCGCTAGCCATAAATCAGCACATTAGCAACATTCACCATTAAGTCCAAATATCGCTAG
* * * *
891739 TCATGAATCAGCATACTGGCAGCTTTTA
129 CCATGAATCAACACACTGGCA-CCTTTA
* * * *
891767 TCATCTTCAAGTCCAATGTCATTAGCCTTGAATCAACACATTGGCACCCTTATTATCTTTAAGTC
1 TCATCTTCAAGTCCAATGTCACTAGCCATGAATCAACACATTGGCACCTTTATCATCTTTAAGTC
* * * * * * *
891832 CAATGTCGCTGGCCTTAAATCAGCACATTGGTAACCTTCATCTTTAAGTCCAAATATCGCTAGCC
66 CAATGTCGCTAGCCATAAATCAGCACATTAGCAACATTCACCATTAAGTCCAAATATCGCTAGCC
* *
891897 TTGAATCAACACATTGGCACCTTTA
131 ATGAATCAACACACTGGCACCTTTA
* * * * * * *
891922 TCATCTTTAAGTTCAATGTCGCTAGCCATAAATCAATACATTAGCACCTTTATCATCTTTAAGTT
1 TCATCTTCAAGTCCAATGTCACTAGCCATGAATCAACACATTGGCACCTTTATCATCTTTAAGTC
*
891987 CAATGTCGCTAGCCATAAATCAACACATTAGCA
66 CAATGTCGCTAGCCATAAATCAGCACATTAGCA
892020 CCTTTATCAT
Statistics
Matches: 208, Mismatches: 43, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
155 144 0.69
156 64 0.31
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.32
Consensus pattern (155 bp):
TCATCTTCAAGTCCAATGTCACTAGCCATGAATCAACACATTGGCACCTTTATCATCTTTAAGTC
CAATGTCGCTAGCCATAAATCAGCACATTAGCAACATTCACCATTAAGTCCAAATATCGCTAGCC
ATGAATCAACACACTGGCACCTTTA
Found at i:892164 original size:79 final size:79
Alignment explanation
Indices: 892028--892189 Score: 279
Period size: 79 Copynumber: 2.1 Consensus size: 79
892018 CACCTTTATC
* *
892028 ATCATTAAGTCTGGTGTCATAGGCCTTAAATCAGCACATTTGCAACCTTCACCGTTAAGCCCGAC
1 ATCAATAAGTCTGGTGTCATAGGCCTTAAATCAACACATTTGCAACCTTCACCGTTAAGCCCGAC
892093 ATCGCTAGCCATGA
66 ATCGCTAGCCATGA
*
892107 ATCAATAAGTCTGGTGTCATAGGCCTTGAATCAACACATTTGCAACCTTCACCGTTAAGCCCGAC
1 ATCAATAAGTCTGGTGTCATAGGCCTTAAATCAACACATTTGCAACCTTCACCGTTAAGCCCGAC
* *
892172 ATCGCTGGCTATGA
66 ATCGCTAGCCATGA
892186 ATCA
1 ATCA
892190 GCATATTGGC
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 78 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (79 bp):
ATCAATAAGTCTGGTGTCATAGGCCTTAAATCAACACATTTGCAACCTTCACCGTTAAGCCCGAC
ATCGCTAGCCATGA
Found at i:892291 original size:103 final size:102
Alignment explanation
Indices: 892121--892558 Score: 332
Period size: 103 Copynumber: 4.3 Consensus size: 102
892111 ATAAGTCTGG
* * * *
892121 TGTCA-TAGGCCTTGAATCAACACATTTGCAACCTTCACCGTTAAGCCCGACATCGCTGGCTATG
1 TGTCACTA-GCCTTGAATCAGCACATTAGCAACCTTCACCATTAAGCCCAACATCGCTGGCTATG
* *
892185 AATCAGCATATTGGCCCCTTTTATCATCTTTAAGTCCAT
65 AATCAGCATATTGG-CACTTTTATCATCTTTAAGTCCAA
* * * *
892224 TGTCACTAGCCTTGAATCAGCACATTAGCAACCTTCACCATTAAGTCCAATATCGTTGGCTGTGA
1 TGTCACTAGCCTTGAATCAGCACATTAGCAACCTTCACCATTAAGCCCAACATCGCTGGCTATGA
*
892289 ATCAGCATATTGGTACTTTTATCATCTTTAAGTCCAA
66 ATCAGCATATTGGCACTTTTATCATCTTTAAGTCCAA
* * * * * * * * **
892326 TGTCGCTAGCCTTGAATCAGCACATTGGC-ACCTTTATTGTCTTTAAGTCCAATATCGCTAGCCC
1 TGTCACTAGCCTTGAATCAGCACATTAGCAACCTTCA---CCATTAAGCCCAACATCGCTGGCTA
* * *
892390 TGAATCAGCACATTGGTAAC--CT-TCATCTTTAAGTCCAAA
63 TGAATCAGCATATTGG-CACTTTTATCATCTTTAAGTCC-AA
* ** * * * * * ** * * *
892429 TATCGTTGGCCTTGAATCAGCACATTGGC-ACCTTTATCATCTTTAAGTCCAATGTTGCTAGCCA
1 TGTCACTAGCCTTGAATCAGCACATTAGCAACC--T-TCACCATTAAGCCCAACATCGCTGGCTA
* * * ** *
892493 TGAATCAGCACATTGGCACCTTTATCATCATTAAGTTTAG
63 TGAATCAGCATATTGGCACTTTTATCATCTTTAAGTCCAA
*
892533 TGTCA-TAGGCCTTGAATCTGCACATT
1 TGTCACTA-GCCTTGAATCAGCACATT
892559 GGCACATTAC
Statistics
Matches: 282, Mismatches: 40, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
101 6 0.02
102 64 0.23
103 138 0.49
104 58 0.21
105 14 0.05
106 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (102 bp):
TGTCACTAGCCTTGAATCAGCACATTAGCAACCTTCACCATTAAGCCCAACATCGCTGGCTATGA
ATCAGCATATTGGCACTTTTATCATCTTTAAGTCCAA
Found at i:892549 original size:52 final size:51
Alignment explanation
Indices: 892183--892563 Score: 344
Period size: 52 Copynumber: 7.4 Consensus size: 51
892173 TCGCTGGCTA
* * *
892183 TGAATCAGCATATTGGCCCCTTTTATCATCTTTAAGTCCATTGTCACTAGCCT
1 TGAATCAGCACATTGGCACC-TTTATCATCTTTAAGTCCAATGTCA-TAGCCT
* * * * * * *
892236 TGAATCAGCACATTAGCAACC--T-TCACCATTAAGTCCAATATCGTTGGCT
1 TGAATCAGCACATTGGC-ACCTTTATCATCTTTAAGTCCAATGTCATAGCCT
* * * *
892285 GTGAATCAGCATATTGGTACTTTTATCATCTTTAAGTCCAATGTCGCTAGCCT
1 -TGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATGTC-ATAGCCT
** * * *
892338 TGAATCAGCACATTGGCACCTTTATTGTCTTTAAGTCCAATATCGCTAGCCC
1 TGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATGTC-ATAGCCT
* * * *
892390 TGAATCAGCACATTGGTAACC--T-TCATCTTTAAGTCCAAATATCGTTGGCCT
1 TGAATCAGCACATTGG-CACCTTTATCATCTTTAAGTCC-AATGTC-ATAGCCT
*
892441 TGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATGTTGC-TAGCCA
1 TGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATG-T-CATAGCCT
* ** *
892493 TGAATCAGCACATTGGCACCTTTATCATCATTAAGTTTAGTGTCATAGGCCT
1 TGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATGTCATA-GCCT
*
892545 TGAATCTGCACATTGGCAC
1 TGAATCAGCACATTGGCAC
892564 ATTACATGAG
Statistics
Matches: 270, Mismatches: 43, Indels: 31
0.78 0.12 0.09
Matches are distributed among these distances:
49 6 0.02
50 46 0.17
51 33 0.12
52 145 0.54
53 37 0.14
54 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (51 bp):
TGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATGTCATAGCCT
Found at i:892549 original size:155 final size:153
Alignment explanation
Indices: 892173--892562 Score: 503
Period size: 155 Copynumber: 2.5 Consensus size: 153
892163 AAGCCCGACA
* * * * *
892173 TCGCTGGCTATGAATCAGCATATTGGCCCCTTTTATCATCTTTAAGTCCATTGTCACTAGCCTTG
1 TCGCTAGCCATGAATCAGCACATTGGCACC-TTTATCATCTTTAAGTCCAATGTCA-TAGCCTTG
* * *
892238 AATCAGCACATTAGCAACCTTCACCATTAAGTCCAATATCGTTGGCTGTGAATCAGCATATTGGT
64 AATCAGCACATTGGCAACCTTCACCATTAAGTCCAATATCGTTGGCTGTGAATCAGCACATTGGC
*
892303 ACTTTTATCATCTTTAAGTCCAATG
129 ACCTTTATCATCTTTAAGTCCAATG
* ** * * *
892328 TCGCTAGCCTTGAATCAGCACATTGGCACCTTTATTGTCTTTAAGTCCAATATCGCTAGCCCTGA
1 TCGCTAGCCATGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATGTC-ATAGCCTTGA
* * *
892393 ATCAGCACATTGGTAACCTTCATCTTTAAGTCCAAATATCGTTGGCCT-TGAATCAGCACATTGG
65 ATCAGCACATTGGCAACCTTCACCATTAAGTCC-AATATCGTTGG-CTGTGAATCAGCACATTGG
892457 CACCTTTATCATCTTTAAGTCCAATG
128 CACCTTTATCATCTTTAAGTCCAATG
* * ** *
892483 TTGCTAGCCATGAATCAGCACATTGGCACCTTTATCATCATTAAGTTTAGTGTCATAGGCCTTGA
1 TCGCTAGCCATGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATGTCATA-GCCTTGA
*
892548 ATCTGCACATTGGCA
65 ATCAGCACATTGGCA
892563 CATTACATGA
Statistics
Matches: 200, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
154 59 0.29
155 139 0.69
156 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (153 bp):
TCGCTAGCCATGAATCAGCACATTGGCACCTTTATCATCTTTAAGTCCAATGTCATAGCCTTGAA
TCAGCACATTGGCAACCTTCACCATTAAGTCCAATATCGTTGGCTGTGAATCAGCACATTGGCAC
CTTTATCATCTTTAAGTCCAATG
Found at i:895720 original size:283 final size:284
Alignment explanation
Indices: 895202--895764 Score: 905
Period size: 283 Copynumber: 2.0 Consensus size: 284
895192 ATTTTTTGAT
*
895202 ACCAAATGAGTCCGAGATGATTTTTCAAAGTTTGACATATCTGTTTTCTTGCATACTCTGCTAGT
1 ACCAAATGAGTCCAAGATGATTTTTCAAAGTTTGACATATCTGTTTTCTTGCATACTCTGCTAGT
*
895267 AGTGTACTTAACCTGACTTCAAAAATTTATTTCTCTTAGAAAATGATTTTTTGAGATTTTTGAGA
66 AGTGTACTTAACCTGACTTCAAAAAGTTATTTCTCTTAGAAAATGATTTTTTGAGATTTTTGAGA
* * *
895332 TATATTTAGATCAACCCTCATCGTGTTCCCTTTCTAACGGTACCTTTTACACCCTCTAGAATCCT
131 TATATTTAGATCAACCCTCATCGTGTTACCTTTCTAACGGTACCTTTTACACCCTCTAGAACCCC
* * * *
895397 TGAATCAAGCTAAAATAAATTCAGAAGGTGGGATAGCGCGATGCTATCCCTTA-TTTTAGCTATT
196 CGAATCAAGCTAAAATAAATTCAGAACGTAGGACAGCGCGATGCTATCCCTTACTTTTAGCTATT
*
895461 GCTAAAATTCGTGTATTTTCCTGG
261 GCCAAAATTCGTGTATTTTCCTGG
* *
895485 ACCAAATGAGTCCAAGGTGATTTTTCAAAGTTTGACATA-CGTGTTTTCTTGCATGCTCTGCTAG
1 ACCAAATGAGTCCAAGATGATTTTTCAAAGTTTGACATATC-TGTTTTCTTGCATACTCTGCTAG
* *
895549 TAGTGTACTTAACCTGGCTTCAAAAAGTTATTTCTCTTAGAAATTGATTTTTTGAGATTTTTGAG
65 TAGTGTACTTAACCTGACTTCAAAAAGTTATTTCTCTTAGAAAATGATTTTTTGAGATTTTTGAG
* * *
895614 ATATATTTAGATCAACCTTCATCTTGTTACCTTTCTAACGGTATCTTTTACACCCTCTAGAACCC
130 ATATATTTAGATCAACCCTCATCGTGTTACCTTTCTAACGGTACCTTTTACACCCTCTAGAACCC
* * * *
895679 CCGAATCAATCTGAAATATATTCAGAACTTAGGACAGCGCGATGCTATCCCTTACTTTTAGCTAT
195 CCGAATCAAGCTAAAATAAATTCAGAACGTAGGACAGCGCGATGCTATCCCTTACTTTTAGCTAT
*
895744 TGCCAAAATTGGTGTATTTTC
260 TGCCAAAATTCGTGTATTTTC
895765 TCGAGTTTCA
Statistics
Matches: 256, Mismatches: 22, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
282 1 0.00
283 226 0.88
284 29 0.11
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (284 bp):
ACCAAATGAGTCCAAGATGATTTTTCAAAGTTTGACATATCTGTTTTCTTGCATACTCTGCTAGT
AGTGTACTTAACCTGACTTCAAAAAGTTATTTCTCTTAGAAAATGATTTTTTGAGATTTTTGAGA
TATATTTAGATCAACCCTCATCGTGTTACCTTTCTAACGGTACCTTTTACACCCTCTAGAACCCC
CGAATCAAGCTAAAATAAATTCAGAACGTAGGACAGCGCGATGCTATCCCTTACTTTTAGCTATT
GCCAAAATTCGTGTATTTTCCTGG
Found at i:898213 original size:51 final size:51
Alignment explanation
Indices: 898147--898243 Score: 140
Period size: 51 Copynumber: 1.9 Consensus size: 51
898137 ATTTTTGTCA
* * *
898147 AAAACCTAGAATGTATCGAGACAATGAAAAATTTATCAATACATTTGGGTC
1 AAAACCCAGAATGTATCAAGACAATGAAAAATGTATCAATACATTTGGGTC
* **
898198 AAAACCCAGAATGTATCAATACAATGAAAAATGTATGGATACATTT
1 AAAACCCAGAATGTATCAAGACAATGAAAAATGTATCAATACATTT
898244 TCATTCCGGG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 40 1.00
ACGTcount: A:0.45, C:0.13, G:0.14, T:0.27
Consensus pattern (51 bp):
AAAACCCAGAATGTATCAAGACAATGAAAAATGTATCAATACATTTGGGTC
Found at i:898324 original size:20 final size:20
Alignment explanation
Indices: 898299--898352 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
898289 CGTTTTAGAC
*
898299 ATGTATCGATACATT-CACTT
1 ATGTATCGATACATTAC-CCT
*
898319 ATGTATCGATACGTTACCCT
1 ATGTATCGATACATTACCCT
898339 ATTGTATCGATACA
1 A-TGTATCGATACA
898353 AATTGTTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTACCCT
Found at i:899776 original size:10 final size:10
Alignment explanation
Indices: 899757--899801 Score: 56
Period size: 10 Copynumber: 4.6 Consensus size: 10
899747 TTTTATTGTG
899757 AAAG-AAAAA
1 AAAGAAAAAA
899766 AAAGAAAAAA
1 AAAGAAAAAA
*
899776 AAAGAAGAAA
1 AAAGAAAAAA
* *
899786 AGAGAAAAGA
1 AAAGAAAAAA
899796 AAAGAA
1 AAAGAA
899802 TAAATGGAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
9 4 0.13
10 26 0.87
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:899791 original size:20 final size:19
Alignment explanation
Indices: 899757--899801 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
899747 TTTTATTGTG
899757 AAAGAAAAAAAAGAAAAAA
1 AAAGAAAAAAAAGAAAAAA
* *
899776 AAAGAAGAAAAGAGAAAAGA
1 AAAGAA-AAAAAAGAAAAAA
899796 AAAGAA
1 AAAGAA
899802 TAAATGGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (19 bp):
AAAGAAAAAAAAGAAAAAA
Found at i:901137 original size:92 final size:92
Alignment explanation
Indices: 900971--901154 Score: 237
Period size: 92 Copynumber: 2.0 Consensus size: 92
900961 TCAATATTGG
* * *
900971 AAGCTTGATTTCCTTAGGGCAAGGACATCCAGACCACGTATTCCCAATCATATCCCTTTCATTCA
1 AAGCCTGATTTACTTAGGGCAAAGACATCCAGACCACGTATTCCCAATCATATCCCTTTCATTCA
901036 ACCACTAGATGATATTGATGCATCACA
66 ACCACTAGATGATATTGATGCATCACA
* * *
901063 AAGCCTGATTTACTTGGGGCAAAGATATCCCGACCAC-TCATTCCCAATCATATCCCTTTC-TCT
1 AAGCCTGATTTACTTAGGGCAAAGACATCCAGACCACGT-ATTCCCAATCATATCCCTTTCAT-T
* * * * *
901126 TAGCCATTAGATGCTGTTGATGCATCACA
64 CAACCACTAGATGATATTGATGCATCACA
901155 GAAAAACAAA
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
91 2 0.03
92 77 0.97
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (92 bp):
AAGCCTGATTTACTTAGGGCAAAGACATCCAGACCACGTATTCCCAATCATATCCCTTTCATTCA
ACCACTAGATGATATTGATGCATCACA
Found at i:901782 original size:47 final size:47
Alignment explanation
Indices: 901653--902202 Score: 148
Period size: 47 Copynumber: 11.9 Consensus size: 47
901643 GTTGCCCCAA
* * ** * * * *
901653 TCAAACTCTTTT-ACCTTTGTTTGATTGTATTGGCATTA-GTCCTGG
1 TCAAACTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACCAGG
* ** ** * *
901698 TCAAACTCTTTCCACCCTCGTTTGATTCTATTGGCATTAGGACCTA-G
1 TCAAACTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACC-AGG
* *
901745 TTAACCTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACCAGG
1 TCAAACTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACCAGG
* * * *
901792 TCAAACTTTTTTCACCCTTGTTTGGCTATATT-GACATTTGGA-CATGA
1 TCAAACTCTTTTCACCCTTATTTGGCTATATTAG-CATTAGGACCA-GG
* * * * *** * * ** *
901839 TCAAA--CTATCCAACCTTGTTTAATTGTATTGGTGTTAAGACCTA-G
1 TCAAACTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACC-AGG
* * *
901884 TCAAACTCTTTTCACCCTTATTTGGTTGTATTGGCATTAGGACCTA-G
1 TCAAACTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACC-AGG
* * ** *** * * * **
901931 TCAAACCCTTTCCACCCTTGCTTAATTGTATTGGCATTATGACTTGG
1 TCAAACTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACCAGG
* ** * * *
901978 TCAAACTGTTTT---CCTTCGTTGGCTATATTTGCATTA-GTCCTGG
1 TCAAACTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACCAGG
* * ** * * *
902021 TCAAACTCTTTCCACCCTTGGTTT-ATTGTATTGGCATTAGGACCTGG
1 TCAAACTCTTTTCACCCTT-ATTTGGCTATATTAGCATTAGGACCAGG
* * ** **
902068 TCAGACTCTTTTTACCCCCATTTGATTATATTA--ATGCTAGGACCTA-G
1 TCAAACTCTTTTCACCCTTATTTGGCTATATTAGCAT--TAGGACC-AGG
* *** * * *
902115 TCAAACTCTTTTTA-CCTTCGCCTGACTATATTAGCATTAGGTCCTGG
1 TCAAACTCTTTTCACCCTT-ATTTGGCTATATTAGCATTAGGACCAGG
* * ** *
902162 TTAAACT-TCTTTAACCCTCGTTTGACTATATTAGCAATTAG
1 TCAAACTCT-TTTCACCCTTATTTGGCTATATTAGC-ATTAG
902203 TCCTAGTTAA
Statistics
Matches: 381, Mismatches: 96, Indels: 53
0.72 0.18 0.10
Matches are distributed among these distances:
43 15 0.04
44 17 0.04
45 39 0.10
46 50 0.13
47 250 0.66
48 8 0.02
49 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.40
Consensus pattern (47 bp):
TCAAACTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACCAGG
Found at i:901908 original size:92 final size:93
Alignment explanation
Indices: 901791--901964 Score: 226
Period size: 92 Copynumber: 1.9 Consensus size: 93
901781 TTAGGACCAG
* * *
901791 GTCAAACTTTTTTCACCCTTGTTTGGCTATATTGACATTTGGACAT-GATCAAA-CTATCCAACC
1 GTCAAACTCTTTTCACCCTTATTTGGCTATATTGACATTAGGACATAG-TCAAACCTATCCAACC
*
901854 TTGTTTAATTGTATTGGTGTTAAGACCTA
65 TTGCTTAATTGTATTGGTGTTAAGACCTA
* * * * * *
901883 GTCAAACTCTTTTCACCCTTATTTGGTTGTATTGGCATTAGGACCTAGTCAAACCCTTTCCACCC
1 GTCAAACTCTTTTCACCCTTATTTGGCTATATTGACATTAGGACATAGTCAAA-CCTATCCAACC
901948 TTGCTTAATTGTATTGG
65 TTGCTTAATTGTATTGG
901965 CATTATGACT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 44 0.64
93 1 0.01
94 24 0.35
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (93 bp):
GTCAAACTCTTTTCACCCTTATTTGGCTATATTGACATTAGGACATAGTCAAACCTATCCAACCT
TGCTTAATTGTATTGGTGTTAAGACCTA
Found at i:901982 original size:139 final size:139
Alignment explanation
Indices: 901676--901984 Score: 327
Period size: 139 Copynumber: 2.2 Consensus size: 139
901666 CCTTTGTTTG
* * * * * *
901676 ATTGTATTGGCATTA-GTCCTGGTCAAACTCTTTCCACCCTCGTTTGATTCTATTGGCATTAGGA
1 ATTGTATTGGCATTATGACATGGTCAAA--CTATCCAACCTCGTTTAATTCTATTGGCATTAAGA
* * ** *
901740 CCTAGTTAACCTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACCAGGTCAAACTTTTTTC
64 CCTAGTCAAACTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACCAGGTCAAACCCTTTCC
* *
901805 ACCCTTGTTTG
129 ACCCTTGCTTA
** * * * * * **
901816 GCTATATTGACATT-TGGACATGATCAAACTATCCAACCTTGTTTAATTGTATTGGTGTTAAGAC
1 ATTGTATTGGCATTAT-GACATGGTCAAACTATCCAACCTCGTTTAATTCTATTGGCATTAAGAC
* * *
901880 CTAGTCAAACTCTTTTCACCCTTATTTGGTTGTATTGGCATTAGGACCTA-GTCAAACCCTTTCC
65 CTAGTCAAACTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACC-AGGTCAAACCCTTTCC
901944 ACCCTTGCTTA
129 ACCCTTGCTTA
*
901955 ATTGTATTGGCATTATGACTTGGTCAAACT
1 ATTGTATTGGCATTATGACATGGTCAAACT
901985 GTTTTCCTTC
Statistics
Matches: 134, Mismatches: 31, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
139 113 0.84
140 12 0.09
141 9 0.07
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (139 bp):
ATTGTATTGGCATTATGACATGGTCAAACTATCCAACCTCGTTTAATTCTATTGGCATTAAGACC
TAGTCAAACTCTTTTCACCCTTATTTGGCTATATTAGCATTAGGACCAGGTCAAACCCTTTCCAC
CCTTGCTTA
Found at i:902050 original size:90 final size:91
Alignment explanation
Indices: 901676--902079 Score: 282
Period size: 94 Copynumber: 4.4 Consensus size: 91
901666 CCTTTGTTTG
* * * ** *
901676 ATTGTATTGGCATTA-GTCCTGGTCAAACTCTTTCCACCCTCGTTTGATTCTATTGGCATTAGGA
1 ATTGTATTGGCATTAGGACCTGGTCAAACTCTTT--TCCTTCG-TTGGCTATATTGGCATTAGGA
* * ** *
901740 CCTAGT-TAACCTCTTTTCACCCTTATTTG
63 CCTAGTCAAACC-CTTTCCACCCTTGCTTA
** * * * * * *
901769 GCTATATTAGCATTAGGACCAGGTCAAACTTTTTTCACCCTT-GTTTGGCTATATTGACATTTGG
1 ATTGTATTGGCATTAGGACCTGGTCAAACTCTTTT---CCTTCG-TTGGCTATATTGGCATTAGG
* * * *
901833 ACAT-GATCAAA--CTATCCAACCTTGTTTA
62 ACCTAG-TCAAACCCTTTCCACCCTTGCTTA
** * * ** * *
901861 ATTGTATTGGTGTTAAGACCTAGTCAAACTCTTTTCACCCTTATTTGGTTGTATTGGCATTAGGA
1 ATTGTATTGGCATTAGGACCTGGTCAAACTCTTTT---CCTTCGTTGGCTATATTGGCATTAGGA
901926 CCTAGTCAAACCCTTTCCACCCTTGCTTA
63 CCTAGTCAAACCCTTTCCACCCTTGCTTA
* * * * *
901955 ATTGTATTGGCATTATGACTTGGTCAAACTGTTTTCCTTCGTTGGCTATATTTGCATTA-GTCCT
1 ATTGTATTGGCATTAGGACCTGGTCAAACTCTTTTCCTTCGTTGGCTATATTGGCATTAGGACCT
* * * *
902019 GGTCAAACTCTTTCCACCCTTGGTTT
66 AGTCAAACCCTTTCCACCCTTGCTTA
*
902045 ATTGTATTGGCATTAGGACCTGGTCAGACTCTTTT
1 ATTGTATTGGCATTAGGACCTGGTCAAACTCTTTT
902080 TACCCCCATT
Statistics
Matches: 241, Mismatches: 60, Indels: 23
0.74 0.19 0.07
Matches are distributed among these distances:
90 57 0.24
91 19 0.08
92 68 0.28
93 13 0.05
94 79 0.33
95 5 0.02
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.40
Consensus pattern (91 bp):
ATTGTATTGGCATTAGGACCTGGTCAAACTCTTTTCCTTCGTTGGCTATATTGGCATTAGGACCT
AGTCAAACCCTTTCCACCCTTGCTTA
Done.