Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold53
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4419549
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.31
Warning! 41486 characters in sequence are not A, C, G, or T
File 6 of 28
Found at i:902208 original size:94 final size:94
Alignment explanation
Indices: 902110--902312 Score: 221
Period size: 94 Copynumber: 2.2 Consensus size: 94
902100 AATGCTAGGA
* ** * * *
902110 CCTAGTCAAACTCTTTTTACC-TTCGCCTGACTATATTAGCATTAGGTCCTGGTTAAACTTCTTT
1 CCTAGTCAAACTCTTTTTACCGTT-GCCTAACTATATTAGCATTAGGAACTGATCAAACTTCTCT
*
902174 AACCCTCGTTT-GACTATATTAGCAATTAGT
65 AACCCTCATTTAG-CTATATTAGCAATTAGT
* ** * *
902204 CCTAGTTAAACTCTTTTTACCGTTGTTTAACTGTATTGGCATTAGGAACTGATCAAACTTCTCTA
1 CCTAGTCAAACTCTTTTTACCGTTGCCTAACTATATTAGCATTAGGAACTGATCAAACTTCTCTA
* **
902269 ACCCTCATTTAGCTGTATTAGTTATTAGT
66 ACCCTCATTTAGCTATATTAGCAATTAGT
* *
902298 TCTGGTCAAACTCTT
1 CCTAGTCAAACTCTT
902313 ATCACCAATG
Statistics
Matches: 89, Mismatches: 18, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
94 86 0.97
95 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.13, T:0.40
Consensus pattern (94 bp):
CCTAGTCAAACTCTTTTTACCGTTGCCTAACTATATTAGCATTAGGAACTGATCAAACTTCTCTA
ACCCTCATTTAGCTATATTAGCAATTAGT
Found at i:902803 original size:21 final size:22
Alignment explanation
Indices: 902779--902828 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
902769 ATCAAATCTT
* *
902779 CTTCAAATTTCTT-ATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
902800 CTTCAAAATACTTCATTTTTCA
1 CTTCAAAATACTTCATTTTTCA
902822 --TCAAAAT
1 CTTCAAAAT
902829 CATCAACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 7 0.27
21 11 0.42
22 8 0.31
ACGTcount: A:0.32, C:0.20, G:0.00, T:0.48
Consensus pattern (22 bp):
CTTCAAAATACTTCATTTTTCA
Found at i:904563 original size:21 final size:23
Alignment explanation
Indices: 904525--904575 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 23
904515 TGAAAATAAA
* *
904525 TTTTTTATCAAAATGGGAGAAAT
1 TTTTTTATCAAAATGGGAAAAAG
904548 TTTTTTATC-AAA-GGGAAAAAG
1 TTTTTTATCAAAATGGGAAAAAG
904569 TTTTTTA
1 TTTTTTA
904576 ACGAAAGCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 14 0.54
22 3 0.12
23 9 0.35
ACGTcount: A:0.37, C:0.04, G:0.16, T:0.43
Consensus pattern (23 bp):
TTTTTTATCAAAATGGGAAAAAG
Found at i:905250 original size:20 final size:19
Alignment explanation
Indices: 905225--905278 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
905215 CTACCACTGC
905225 TTGTATCAATACATG-GCACA
1 TTGTATCAATACATGAG-A-A
**
905245 TTGTATTGATACATGATGAA
1 TTGTATCAATACATGA-GAA
905265 TTGTATCAATACAT
1 TTGTATCAATACAT
905279 TGCTTCAAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
20 26 0.93
21 1 0.04
22 1 0.04
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (19 bp):
TTGTATCAATACATGAGAA
Found at i:910040 original size:52 final size:51
Alignment explanation
Indices: 909962--910110 Score: 226
Period size: 52 Copynumber: 2.9 Consensus size: 51
909952 CAAAATATGA
909962 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* *
910014 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
* **
910066 AAATTTGCCTGTATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
910111 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 84 0.95
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:910117 original size:13 final size:13
Alignment explanation
Indices: 910099--910123 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
910089 CAAAGATCAG
910099 TGTATCGATACAA
1 TGTATCGATACAA
910112 TGTATCGATACA
1 TGTATCGATACA
910124 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:910205 original size:13 final size:13
Alignment explanation
Indices: 910187--910211 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
910177 CAGAAAAAAA
910187 TGTATCGATACAT
1 TGTATCGATACAT
910200 TGTATCGATACA
1 TGTATCGATACA
910212 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:910595 original size:32 final size:32
Alignment explanation
Indices: 910554--910661 Score: 216
Period size: 32 Copynumber: 3.4 Consensus size: 32
910544 CACTGATCTT
910554 TGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGA
910586 TGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGA
910618 TGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGA
910650 TGTATCGATACA
1 TGTATCGATACA
910662 CTATTAAATG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 76 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (32 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:917818 original size:9 final size:9
Alignment explanation
Indices: 917791--917827 Score: 56
Period size: 9 Copynumber: 3.9 Consensus size: 9
917781 TTCTTTTCCA
917791 AAAAAGAAAC
1 AAAAA-AAAC
917801 AAAACAAAAC
1 AAAA-AAAAC
917811 AAAAAAAAC
1 AAAAAAAAC
917820 AAAAAAAA
1 AAAAAAAA
917828 AAGGAAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 13 0.50
10 12 0.46
11 1 0.04
ACGTcount: A:0.86, C:0.11, G:0.03, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:917818 original size:14 final size:13
Alignment explanation
Indices: 917791--917829 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
917781 TTCTTTTCCA
917791 AAAAAGAAACAAAAC
1 AAAAA-AAA-AAAAC
917806 AAAACAAAAAAAAC
1 AAAA-AAAAAAAAC
917820 AAAAAAAAAA
1 AAAAAAAAAA
917830 GGAAAAACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 6 0.26
14 9 0.39
15 7 0.30
16 1 0.04
ACGTcount: A:0.87, C:0.10, G:0.03, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAAAC
Found at i:917828 original size:10 final size:10
Alignment explanation
Indices: 917789--917828 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
917779 TGTTCTTTTC
917789 CAAAAAAGAAA
1 CAAAAAA-AAA
*
917800 CAAAACAAAA
1 CAAAAAAAAA
917810 C-AAAAAAAA
1 CAAAAAAAAA
917819 CAAAAAAAAA
1 CAAAAAAAAA
917829 AGGAAAAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
9 8 0.31
10 12 0.46
11 6 0.23
ACGTcount: A:0.85, C:0.12, G:0.03, T:0.00
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:918806 original size:31 final size:30
Alignment explanation
Indices: 918769--918956 Score: 180
Period size: 31 Copynumber: 6.0 Consensus size: 30
918759 AATTCTTCAA
* *
918769 ATCTCTTCTCAAAGCCCACGACTCAGTGGC
1 ATCTTTTCTCAAAGTCCACGACTCAGTGGC
*
918799 AATCTCTTCTCAAAGTCCACGACTCAGTGGC
1 -ATCTTTTCTCAAAGTCCACGACTCAGTGGC
918830 ATCCTTTTCATCAAAGTCCACGACTCAGTGGC
1 AT-CTTTTC-TCAAAGTCCACGACTCAGTGGC
* *
918862 AT-TTTGTCACAAAGTCAACGACTCAGTGGC
1 ATCTTT-TCTCAAAGTCCACGACTCAGTGGC
* * * *
918892 ATTTTTTCTTCAAAGCCCACAACTCCGTGGC
1 ATCTTTTC-TCAAAGTCCACGACTCAGTGGC
* * * *
918923 ACCTTGTTCCTTCTAAGTCCACAACTCCGTGGC
1 ATCTT-TT-C-TCAAAGTCCACGACTCAGTGGC
918956 A
1 A
918957 CCCTTTTAAA
Statistics
Matches: 137, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
30 29 0.21
31 59 0.43
32 26 0.19
33 23 0.17
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (30 bp):
ATCTTTTCTCAAAGTCCACGACTCAGTGGC
Found at i:919106 original size:34 final size:34
Alignment explanation
Indices: 918903--920735 Score: 1864
Period size: 34 Copynumber: 54.8 Consensus size: 34
918893 TTTTTTCTTC
* * *
918903 AAAGCCCACAACTCCGTGGCACCTTGTTCCTTCT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
918937 -AAGTCCACAACTCCGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * *
918964 AAAGCCCACAATTCCATGGCAACCTTTTTCTTCTC
1 AAAGCCCACAACTCCGTGGC-ACCTTTTTCTTTTT
*
918999 AAAGCCCACCACT-CGTGGCA-CTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
919031 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
*
919068 AAAGCCCACAACTCTGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
919102 AAAGCCCACCACTCTGTGGAACC-TTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
** * *
919135 -AAGTACACGACCCCGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
919162 AAAGCCCACAACTCCGTGGCACCGTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
919196 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
919233 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
919267 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
* *
919304 AAAGCCCACAACTTCGTGGCACCTTTTTCTTTTC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
919338 AAAGCCCACAACTCCGTGGCACCTTGTTCCTTCT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
919372 -AAGTCCACAACTCCGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * * *
919399 CAAGCCCACAATTCCGTGGCAACCTTTTCCTTCTC
1 AAAGCCCACAACTCCGTGGC-ACCTTTTTCTTTTT
*
919434 AAAGCCCACCACT-CGTGGCA-CTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * *
919466 AAAGGCCATAACTCCATGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
*
919503 AAAGCCCACAACTTCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
919537 AAAGCCCACCACTCTGTGGCACC-TTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
919570 -AAGTCCACGAC-CCTGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCC-GTGGCACCTTTTTCTTTTT
*
919597 AAAGCCCACAACTCCGTGACACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
919631 AAATCCCACAACTCCCTGGCACTCTTTTTCCTTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
*
919667 CAAAGCCCACAACTCCATGGCACCTTTTTCTTTTT
1 -AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
919702 AAAGCCCACAACTTCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
** *
919739 AAAGCCCACAACTCTATGGCACCTTTTTCTTTTC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
919773 AAAGCCCACAACTCCGTGGCACCTTGTTCCTTCT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
919807 -AAGTCCACAACTCCGTGCCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * *
919834 AAAGCCCACAATTCCATGGCAACCTTTTTCTTCTC
1 AAAGCCCACAACTCCGTGGC-ACCTTTTTCTTTTT
*
919869 AAAGCCCACCACT-CGTGGCA-CTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
919901 AAAGCCCACAACTCCGTGGCACTCTTTATCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTT-T-TCTTTTT
919938 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
919972 AAAGCCCACCACTCTGTGGCA-CATTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
920005 -AAGTCCACGACCCCGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
920032 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
920066 AAAGCCCACAACTCTGTGGCACCGTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
920100 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
920136 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
920170 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
* *
920207 AAAGCCCACAACTCCGTGGCACCTTTTCCTTTTC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
920241 AAAGCCCACAACTCCGTGGCACCTTGTTCCTTCT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
920275 -AAGTCCACAACTCCGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * *
920302 CAAGCCCACAATTCCGTGGCAACCTTTTTCTTCTC
1 AAAGCCCACAACTCCGTGGC-ACCTTTTTCTTTTT
*
920337 AAAGCCCACCACT-CGTGGCA-CTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
920369 AAAGCCCACAACTTCGTGGCACTCTTTCTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTT-T-TCTTTTT
920406 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
920440 AAAGCCCACCA-TCTGTGGCACCTTTTT-TTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
920472 -AAGTCCACGACCCCGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
920499 AAAGCCTACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
920533 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
920570 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
920604 AAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
*
920641 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTGT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
** *
920675 AAAGCCCACAACTCAATGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
* * *
920711 -AAGTCCACAACTCCATGGCATCTTT
1 AAAGCCCACAACTCCGTGGCACCTTT
920736 CTCCCTTCCT
Statistics
Matches: 1519, Mismatches: 170, Indels: 220
0.80 0.09 0.12
Matches are distributed among these distances:
27 28 0.02
28 143 0.09
29 14 0.01
31 9 0.01
32 148 0.10
33 165 0.11
34 479 0.32
35 154 0.10
36 100 0.07
37 279 0.18
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.33
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
Found at i:919710 original size:435 final size:433
Alignment explanation
Indices: 918900--920702 Score: 2485
Period size: 435 Copynumber: 4.1 Consensus size: 433
918890 GCATTTTTTC
918900 TTCAAAGCCCACAACTCCGTGGCACCTTGTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTTA
1 TTCAAAGCCCACAACTCCGTGGCACCTTGTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTTA
*
918965 AAGCCCACAATTCCATGGCAACCTTTTTCTTCTCAAAGCCCACCACTCGTGGCACTTTTTCTTTT
66 AAGCCCACAATTCCATGGCAACCTTTTCCTTCTCAAAGCCCACCACTCGTGGCACTTTTTCTTTT
919030 TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAAC-TCTGTGGCACCTTT
131 TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTTC-GTGGCACCTTT
* *
919094 TTCTTTTTAAAGCCCACCACTCTGTGGAACCTTTTCTTTTTAAGTACACGACCCCGTGGCACCCT
195 TTCTTTTTAAAGCCCACCACTCTGTGGCACCTTTTCTTTTTAAGTCCACGACCCCGTGGCACCCT
*
919159 TTTAAAGCCCACAACTCCGTGGCACCGTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
260 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTT
*
919224 TCCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTTAAAGCCCACAACTCCGTGGC
324 T--CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGC
*
919287 ACTCTTTTTCCCTTTTCAAAGCCCACAACTTCGTGGCAC-CTTTTT-CTT
387 AC-CTTTTT--CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCTT
*
919335 TTCAAAGCCCACAACTCCGTGGCACCTTGTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTTC
1 TTCAAAGCCCACAACTCCGTGGCACCTTGTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTTA
*
919400 AAGCCCACAATTCCGTGGCAACCTTTTCCTTCTCAAAGCCCACCACTCGTGGCACTTTTTCTTTT
66 AAGCCCACAATTCCATGGCAACCTTTTCCTTCTCAAAGCCCACCACTCGTGGCACTTTTTCTTTT
* * *
919465 TAAAGGCCATAACTCCATGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTTCGTGGCACCTTTT
131 TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTTCGTGGCACCTTTT
*
919530 TCTTTTTAAAGCCCACCACTCTGTGGCACCTTTTCTTTTTAAGTCCACGACCCTGTGGCACCCTT
196 TCTTTTTAAAGCCCACCACTCTGTGGCACCTTTTCTTTTTAAGTCCACGACCCCGTGGCACCCTT
* * *
919595 TTAAAGCCCACAACTCCGTGACACCTTTTTCTTTTTAAATCCCACAACTCCCTGGCACTCTTTTT
261 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT
* *
919660 CCTTTTTCAAAGCCCACAACTCCATGGCAC-CTTTTT-CTTTTTAAAGCCCACAACTTCGTGGCA
325 -CTTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCA
**
919723 CTCTTTTTCCCTTTTCAAAGCCCACAACTCTATGGCAC-CTTTTT-CTT
388 C-CTTTTT--CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCTT
*
919770 TTCAAAGCCCACAACTCCGTGGCACCTTGTTCCTTCTAAGTCCACAACTCCGTGCCACCCTTTTA
1 TTCAAAGCCCACAACTCCGTGGCACCTTGTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTTA
*
919835 AAGCCCACAATTCCATGGCAACCTTTTTCTTCTCAAAGCCCACCACTCGTGGCACTTTTTCTTTT
66 AAGCCCACAATTCCATGGCAACCTTTTCCTTCTCAAAGCCCACCACTCGTGGCACTTTTTCTTTT
* *
919900 TAAAGCCCACAACTCCGTGGCACTCTTTATCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTT
131 TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTTCGTGGCACCTTTT
*
919965 TCTTTTTAAAGCCCACCACTCTGTGGCACATTTTCTTTTTAAGTCCACGACCCCGTGGCACCCTT
196 TCTTTTTAAAGCCCACCACTCTGTGGCACCTTTTCTTTTTAAGTCCACGACCCCGTGGCACCCTT
* *
920030 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACCGTTTTC
261 TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
*
920095 TTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGCCCACAACTCCGTGGCACCT
326 TTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCACCT
*
920160 TTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTT
391 TTTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT-CCTT
* * *
920204 TTCAAAGCCCACAACTCCGTGGCACCTT-TTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTGT
1 TTCAAAGCCCACAACTCCGTGGCACCTTGTTCC--TTCTAAGTCCACAACTCCGTGGCACC--CT
* * * * * * *
920268 TCCTTCTAAGTCCACAACTCCGTGGC-A-C----CCTTTTC-AAGCCCACAATTCCGTGGCAACC
62 T--TT-AAAGCCCACAATTCCATGGCAACCTTTTCCTTCTCAAAGCCCACCACT-CGTGGC-A-C
* * * *
920326 TTTTTCTTCTCAAAGCCCACCACT-CGTGGCA--CTTTTT--CTTTTTAAAGCCCACAACTTCGT
121 TTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTTCGT
* * * * * *
920386 GGCACTCTTTCTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACCA
186 GGCAC-CTTT-T-TCTTTTTAAAGCCCACCACTCTGTGGCACC-TTTTCTTTTT-AAGTCCACGA
* * * * * * * *
920451 -TCTGTGGCACCTTTTTTTTTTAAGTCCACGACCCCGTGGCACC-----C-TTTTAAAGCCTACA
246 CCCCGTGGCACC----CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACA
*
920509 ACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAG
307 ACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT-CCTTTTTAAAG
* *
920574 CCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACTCTTTTTCCCTT
371 CCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTT-CCTT
* * * * ** *
920638 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTGTAAAGCCCACAACTCAATGGCACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTGTTCCTTCT-AAGTCCACAACTCCGTGGCACCCTTTT
920703 TCCCTTTTAA
Statistics
Matches: 1253, Mismatches: 86, Indels: 63
0.89 0.06 0.04
Matches are distributed among these distances:
430 2 0.00
431 51 0.04
432 33 0.03
433 104 0.08
434 224 0.18
435 762 0.61
436 32 0.03
437 2 0.00
438 1 0.00
439 26 0.02
440 16 0.01
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.33
Consensus pattern (433 bp):
TTCAAAGCCCACAACTCCGTGGCACCTTGTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTTTA
AAGCCCACAATTCCATGGCAACCTTTTCCTTCTCAAAGCCCACCACTCGTGGCACTTTTTCTTTT
TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTTCGTGGCACCTTTT
TCTTTTTAAAGCCCACCACTCTGTGGCACCTTTTCTTTTTAAGTCCACGACCCCGTGGCACCCTT
TTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
TTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCACCT
TTTTCTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCTT
Found at i:920752 original size:71 final size:70
Alignment explanation
Indices: 920492--920735 Score: 373
Period size: 71 Copynumber: 3.5 Consensus size: 70
920482 CCCCGTGGCA
* *
920492 CCCTTTTAAAGCCTACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTC
1 CCCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTCTAAAGCCCACAACTCCGTGGCACTC
920557 TTTTT
66 TTTTT
* *
920562 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACT
1 CCCTTTT-AAAGCCCACAACTCCGTGGCACCTTTTTCTTTCTAAAGCCCACAACTCCGTGGCACT
920627 CTTTTT
65 CTTTTT
* **
920633 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTGTAAAGCCCACAACTCAATGGCACT
1 CCCTTTT-AAAGCCCACAACTCCGTGGCACCTTTTTCTTTCTAAAGCCCACAACTCCGTGGCACT
920698 CTTTTT
65 CTTTTT
* * *
920704 CCCTTTT-AAGTCCACAACTCCATGGCATCTTT
1 CCCTTTTAAAGCCCACAACTCCGTGGCACCTTT
920736 CTCCCTTCCT
Statistics
Matches: 164, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
69 22 0.13
70 7 0.04
71 135 0.82
ACGTcount: A:0.21, C:0.34, G:0.11, T:0.34
Consensus pattern (70 bp):
CCCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTCTAAAGCCCACAACTCCGTGGCACTC
TTTTT
Found at i:920776 original size:105 final size:102
Alignment explanation
Indices: 918903--920788 Score: 893
Period size: 104 Copynumber: 18.8 Consensus size: 102
918893 TTTTTTCTTC
* *
918903 AAAGCCCACAACTCCGTGGCAC-CTTGT-T-CCTTCT--AAGTCCACAACTCCGTGGCACC---C
1 AAAGCCCACAACTCCATGGCACTCTT-TCTCCCTTCTCAAAGCCCACAACTCCGTGGCACCTTTC
* * * *
918960 TTTTAAAGCCCACAATTCCATGGCAACCTTTTT-CTTCTC
65 TTCTAAAGCCCACAACTCAATGGC-ACCTTTTTCCTT-TT
* * * *
918999 AAAGCCCACCACT-CGTGGCACT-TTT-T--CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCAC-C--TT
* ** *
919059 TCCCTTTTCAAAGCCCACAACTCTGTGGCACCTTTTTCTTTTT
63 T--CTTCT-AAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* ** * ** ** * *
919102 AAAGCCCACCACTCTGTGGAAC-CTTT-T--CTT-TTTAAGTACACGACCCCGTGGCACC---CT
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACCTTTCT
* ** * *
919159 TTTAAAGCCCACAACTCCGTGGCACCGTTTTCTTTTT
66 TCTAAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* * *
919196 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACC--TTT
* **
919261 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
64 C-TTCTAAAGCCCACAACTCAATGGCAC-CTTTTT-CCTTTT
* * * *
919303 CAAAGCCCACAACTTCGTGGCAC-CTTT-T-TCTTTTCAAAGCCCACAACTCCGTGGCACCTTGT
1 -AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACC-T-T
* **
919365 TCCTTCT-AAGTCCACAACTCCGTGGCA-C-----CCTTTT
63 T-CTTCTAAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* * * * *
919399 CAAGCCCACAATTCCGTGGCAAC-CTTT-T-CCTTCTCAAAGCCCACCACT-CGTGGCACTTTTT
1 AAAGCCCACAACTCCATGGC-ACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCAC-CTTT
* * * *
919460 CTTTTTAAAGGCCATAACTCCATGGCACTCTTTTTCCCTTTT
64 C-TTCTAAAGCCCACAACTCAATGGCAC-CTTTTT-CCTTTT
* * * * * * *
919502 CAAAGCCCACAACTTCGTGGCAC-CTTT-T-TCTTTTTAAAGCCCACCACTCTGTGGCACCTTTT
1 -AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACC-TTT
* * * * * **
919564 CTTTTTAAGTCCACGACCCTGTGGCA-C-----CCTTTT
64 CTTCTAAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* * * * * * *
919597 AAAGCCCACAACTCCGTGACAC-CTTT-T-TCTTTTTAAATCCCACAACTCCCTGGCACTCTTTT
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCAC-C--TT
* * *
919659 TCCTTTTTCAAAGCCCACAACTCCATGGCACCTTTTTCTTTTT
63 T-C-TTCT-AAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* * * * **
919702 AAAGCCCACAACTTCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCTATGGCACCTTTTT
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACC--TTT
* ** * *
919767 CTTTTCAAAGCCCACAACTCCGTGGCACCTTGTTCCTTCT
64 CTTCT-AAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* * * * *
919807 -AAGTCCACAACTCCGTGCCAC-C---CT---TT-T-AAAGCCCACAATTCCATGGCAACCTTTT
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGC-ACC--TT
* * *
919862 TCTTCTCAAAGCCCACCACTC-GTGGCA-CTTTTTCTTTTT
63 TCTTCT-AAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* * *
919901 AAAGCCCACAACTCCGTGGCACTCTTTATCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACC--TTT
* * ** *
919966 CTTTTTAAAGCCCACCACTCTGTGGCA-CATTTT-CTTTT
64 C-TTCTAAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* * * * *
920004 TAAGTCCACGACCCCGTGGCAC-C---CT---TT-T-AAAGCCCACAACTCCGTGGCACCTTTTT
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACC--TTT
* ** * *
920060 CTTTTTAAAGCCCACAACTCTGTGGCACCGTTTTCTTTTT
64 C-TTCTAAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* * *
920100 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTT-TTAAAGCCCACAACTCCGTGGCACCTTTTT
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACC--TTT
* **
920164 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
64 C-TTCTAAAGCCCACAACTCAATGGCAC-CTTTTT-CCTTTT
* *
920206 CAAAGCCCACAACTCCGTGGCAC-CTTT-T-CCTTTTCAAAGCCCACAACTCCGTGGCACCTTGT
1 -AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACC-T-T
* **
920268 TCCTTCT-AAGTCCACAACTCCGTGGCA-C-----CCTTTT
63 T-CTTCTAAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* * * * * *
920302 CAAGCCCACAATTCCGTGGCAAC-CTTT-T-TCTTCTCAAAGCCCACCACT-CGTGGCACTTTTT
1 AAAGCCCACAACTCCATGGC-ACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCAC-CTTT
* * *
920363 CTTTTTAAAGCCCACAACTTC-GTGGCACTCTTTCTCCCTTTT
64 C-TTCTAAAGCCCACAAC-TCAATGGCAC-CTTT-TTCCTTTT
* * * * * *
920405 CAAAGCCCACAACTCCGTGGCAC-CTTT-T-TCTTTTTAAAGCCCACCA-TCTGTGGCACCTTTT
1 -AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACC-TTT
* * * * * * **
920466 TTTTTTAAGTCCACGACCCCGTGGCA-C-----CCTTTT
64 CTTCTAAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* * * * *
920499 AAAGCCTACAACTCCGTGGCAC-CTTT-T-TCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCAC-C--TT
* ** *
920561 TCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
63 T--CTTCT-AAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
* * * *
920604 AAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACC--TTT
*
920669 CTTTGTAAAGCCCACAACTCAATGGCACTCTTTTTCCCTTTT
64 C-TTCTAAAGCCCACAACTCAATGGCAC-CTTTTT-CCTTTT
* * *
920711 -AAGTCCACAACTCCATGGCA-TCTTTCTCCCTTC-CTAAAGCCCGCACAAGTCGGTGGCAACC-
1 AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTC-AAAG-CC-CACAACTCCGTGGC-ACCT
920772 TTCTTCTAAAGCCCACA
62 TTCTTCTAAAGCCCACA
920789 CAAGTTGGTG
Statistics
Matches: 1498, Mismatches: 164, Indels: 248
0.78 0.09 0.13
Matches are distributed among these distances:
93 49 0.03
94 191 0.13
95 182 0.12
96 136 0.09
97 6 0.00
98 11 0.01
99 53 0.04
100 5 0.00
101 2 0.00
102 26 0.02
103 183 0.12
104 244 0.16
105 219 0.15
106 54 0.04
107 62 0.04
108 75 0.05
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.32
Consensus pattern (102 bp):
AAAGCCCACAACTCCATGGCACTCTTTCTCCCTTCTCAAAGCCCACAACTCCGTGGCACCTTTCT
TCTAAAGCCCACAACTCAATGGCACCTTTTTCCTTTT
Found at i:920781 original size:33 final size:33
Alignment explanation
Indices: 920744--920849 Score: 157
Period size: 33 Copynumber: 3.3 Consensus size: 33
920734 TTCTCCCTTC
*
920744 CTAAAGCCCGCACAAGTCGGTGGCAACCTTCTT
1 CTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
*
920777 CTAAAGCCCACACAAGTTGGTGGCAACCATTC-T
1 CTAAAGCCCACACAAGTCGGTGGCAACC-TTCTT
920810 CTAAAGCCCACACAAGTCGGTGGCAACC--CTT
1 CTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
920841 CT-AAGCCCA
1 CTAAAGCCCA
920850 ATATAGCTGG
Statistics
Matches: 68, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
30 8 0.12
31 3 0.04
33 54 0.79
34 3 0.04
ACGTcount: A:0.28, C:0.34, G:0.19, T:0.19
Consensus pattern (33 bp):
CTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
Found at i:920900 original size:49 final size:49
Alignment explanation
Indices: 920842--921113 Score: 343
Period size: 43 Copynumber: 5.7 Consensus size: 49
920832 GCAACCCTTC
* *
920842 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
920891 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT-G-A----CACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
920934 TAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
920983 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
921026 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* *
921078 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTG
921114 ACATCCTTTT
Statistics
Matches: 194, Mismatches: 14, Indels: 27
0.83 0.06 0.11
Matches are distributed among these distances:
43 78 0.40
44 1 0.01
45 2 0.01
47 1 0.01
48 1 0.01
49 74 0.38
50 1 0.01
52 36 0.19
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:921004 original size:92 final size:92
Alignment explanation
Indices: 920837--921122 Score: 464
Period size: 92 Copynumber: 3.1 Consensus size: 92
920827 CGGTGGCAAC
* *
920837 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATG
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
920902 TAGCTGGCCTTGAATCAGCACATTGACA
65 TAGCTGGCCTTGAATCAGCACATTGACA
* *
920930 CCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
*
920995 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGACA
* *
921022 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAA
921087 TGTAGCTGGCCTTGAATCAGCACATTGACA
63 TGTAGCTGGCCTTGAATCAGCACATTGACA
921117 TCCTTT
1 -CCTTT
921123 TTCTCATCTT
Statistics
Matches: 179, Mismatches: 10, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
92 124 0.69
93 4 0.02
94 3 0.02
95 43 0.24
96 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGACA
Found at i:921101 original size:52 final size:53
Alignment explanation
Indices: 921023--921176 Score: 193
Period size: 52 Copynumber: 2.9 Consensus size: 53
921013 ACATTGGCAC
921023 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
* * * *
921075 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTCTCAT
* * * * * *
921130 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
921177 ATCACTTTTC
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
52 38 0.45
53 5 0.06
54 6 0.07
55 36 0.42
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
Found at i:921234 original size:67 final size:68
Alignment explanation
Indices: 921126--921252 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
921116 ATCCTTTTTC
* * *
921126 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
921190 TCT
66 TCT
* * * * *
921193 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATTAGCATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
921253 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:921859 original size:13 final size:13
Alignment explanation
Indices: 921841--921865 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
921831 CATAAAGTGT
921841 TGTATCGATACAA
1 TGTATCGATACAA
921854 TGTATCGATACA
1 TGTATCGATACA
921866 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:921946 original size:13 final size:13
Alignment explanation
Indices: 921928--921952 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
921918 ATTACTCAAA
921928 TGTATCGATACAT
1 TGTATCGATACAT
921941 TGTATCGATACA
1 TGTATCGATACA
921953 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:922017 original size:52 final size:52
Alignment explanation
Indices: 921961--922085 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
921951 CACTGATCTT
*
921961 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
922013 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
922065 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAGGCAA
922086 CTTTTCATAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:926844 original size:29 final size:33
Alignment explanation
Indices: 926794--926863 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 33
926784 AAACAAACAT
* *
926794 AATTCAATCATACAACATAACA-AA-CATC-AA
1 AATTCATTCATACAACAAAACAGAATCATCAAA
926824 AATTCATTCA-ACAACAAAACATGAATCATCAAA
1 AATTCATTCATACAACAAAACA-GAATCATCAAA
926857 AATTCAT
1 AATTCAT
926864 AATATCACAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 10 0.29
30 9 0.26
31 2 0.06
32 4 0.12
33 9 0.26
ACGTcount: A:0.54, C:0.21, G:0.01, T:0.23
Consensus pattern (33 bp):
AATTCATTCATACAACAAAACAGAATCATCAAA
Found at i:932840 original size:13 final size:13
Alignment explanation
Indices: 932822--932847 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
932812 CAATTTTAGC
932822 ATGTATCGATACA
1 ATGTATCGATACA
932835 ATGTATCGATACA
1 ATGTATCGATACA
932848 TTGTCCCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:932863 original size:33 final size:34
Alignment explanation
Indices: 932799--932868 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 34
932789 CCGTTACAAG
* *
932799 CAATGTATCGATACAATTTTAGCATGTATCGATA
1 CAATGTATCGATACAATTGTACCATGTATCGATA
*
932833 CAATGTATCGATAC-ATTGTCCCATGTATCGATA
1 CAATGTATCGATACAATTGTACCATGTATCGATA
932866 CAA
1 CAA
932869 ACAGTGGTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
33 19 0.58
34 14 0.42
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (34 bp):
CAATGTATCGATACAATTGTACCATGTATCGATA
Found at i:932923 original size:20 final size:20
Alignment explanation
Indices: 932893--932950 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
932883 GCTACTGCCA
932893 ATCTCATGTATCGATACAATT
1 ATCT-ATGTATCGATACAATT
*
932914 ATCTATGTATTGATACAATT
1 ATCTATGTATCGATACAATT
*
932934 AAC-ATGTATCGATACAA
1 ATCTATGTATCGATACAA
932951 GCATAATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 13 0.38
20 17 0.50
21 4 0.12
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCTATGTATCGATACAATT
Found at i:940608 original size:19 final size:19
Alignment explanation
Indices: 940584--940651 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
940574 AATTCAACGA
940584 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
940603 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
940618 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
940635 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
940652 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:940622 original size:32 final size:32
Alignment explanation
Indices: 940586--940648 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
940576 TTCAACGATT
*
940586 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
940618 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
940649 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:940623 original size:13 final size:13
Alignment explanation
Indices: 940605--940629 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
940595 ACATAAGTTT
940605 TGTATCGATACAA
1 TGTATCGATACAA
940618 TGTATCGATACA
1 TGTATCGATACA
940630 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:943159 original size:27 final size:28
Alignment explanation
Indices: 943128--943199 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 28
943118 AACACCAAAT
**
943128 GGGATACTCCAACCCCGTTA-ATCATCG
1 GGGATACTCCAACCCCGTTATATCAGAG
* * *
943155 GGGATACTCCAACCCTGTTATTTCCGAG
1 GGGATACTCCAACCCCGTTATATCAGAG
943183 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
943200 GTTTTATTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
27 19 0.50
28 19 0.50
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (28 bp):
GGGATACTCCAACCCCGTTATATCAGAG
Found at i:943307 original size:52 final size:50
Alignment explanation
Indices: 943182--943404 Score: 223
Period size: 52 Copynumber: 4.3 Consensus size: 50
943172 TTATTTCCGA
* * *** *
943182 GGGGATACTCCAACCCCGGTTTTATTTCCAAAATATTGATTTTTCATAATC
1 GGGGATACTCCAACCCCGGTTTTA-TTCTAAAACACCAATTTTTCACAATC
*
943233 GGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGGTTTTATT-CTAAAACACCAATTTTT-CACAATC
* *
943285 GGGGATACTCCAACCCCAGTTTTATTTTCAAAACACCAATTTTTC-CTTTAATC
1 GGGGATACTCCAACCCCGGTTTTATTCT-AAAACACCAATTTTTCAC---AATC
** * * *
943338 GGGGATACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACCCCGGTTTTA-TT-CTAAAACACCAATTTTTCACAATC
*
943390 GAGGATACTCCAACC
1 GGGGATACTCCAACC
943405 TCGTTATCTC
Statistics
Matches: 145, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
50 3 0.02
51 39 0.27
52 61 0.42
53 24 0.17
54 17 0.12
55 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (50 bp):
GGGGATACTCCAACCCCGGTTTTATTCTAAAACACCAATTTTTCACAATC
Found at i:943396 original size:105 final size:103
Alignment explanation
Indices: 943184--943404 Score: 273
Period size: 105 Copynumber: 2.1 Consensus size: 103
943174 ATTTCCGAGG
* * ***
943184 GGATACTCCAACCCCGGTTTTATTTCCAAAATATTGATTTTTCATAATCGGGGATACTCCAACCC
1 GGATACTCCAACCCCAGTTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCC
* * * * *
943249 CGGTTTTATTGCTAAAACACTAATTTTTCCACAATCGG
66 CGATTTTATTCCAAAAACACCAATTTTTCCACAATCGA
* * *
943287 GGATACTCCAACCCCAGTTTTATTTTCAAAACACCAATTTTTCCTTTAATCGGGGATACTCCAAT
1 GGATACTCCAACCCCAGTTTTATTTCCAAAACACCAATTTTT-C-ATAATCGGGGATACTCCAAC
* *
943352 TCCGATTTTATTTCCAAAAATACCAATTTTT-CACAATCGA
64 CCCGATTTTA-TTCCAAAAACACCAATTTTTCCACAATCGA
943392 GGATACTCCAACC
1 GGATACTCCAACC
943405 TCGTTATCTC
Statistics
Matches: 100, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
103 36 0.36
104 1 0.01
105 47 0.47
106 16 0.16
ACGTcount: A:0.30, C:0.25, G:0.11, T:0.33
Consensus pattern (103 bp):
GGATACTCCAACCCCAGTTTTATTTCCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCC
CGATTTTATTCCAAAAACACCAATTTTTCCACAATCGA
Found at i:943498 original size:28 final size:28
Alignment explanation
Indices: 943418--943486 Score: 120
Period size: 28 Copynumber: 2.5 Consensus size: 28
943408 TTATCTCATC
* *
943418 GGGGATACTCCAACCCCATTACTTCCGA
1 GGGGATACTCCAACCCCATTATTTTCGA
943446 GGGGATACTCCAACCCCATTATTTTCGA
1 GGGGATACTCCAACCCCATTATTTTCGA
943474 GGGGATACTCCAA
1 GGGGATACTCCAA
943487 TCCCGATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.23
Consensus pattern (28 bp):
GGGGATACTCCAACCCCATTATTTTCGA
Found at i:945308 original size:157 final size:157
Alignment explanation
Indices: 945022--945335 Score: 558
Period size: 157 Copynumber: 2.0 Consensus size: 157
945012 TATGGCCTCC
*
945022 CGAATCAAATCATCACAGACAATGCAACTAACTTAAACAACAAAATGATGCAAGCCATTTGCTTT
1 CGAATCAAATCATCACAGACAATGCAACTAACTTAAACAACAAAATGATGCAAGCCATCTGCTTT
* *
945087 CAGTTCAAGATCAAGCATCATAATTCTGTCCCTTATTGCCCAAAGATGAATGGGGTAGTCGAGGC
66 CAGTTCAAGATCAAGCATCATAATTCTGTCCCTTATCGCCCAAAGATGAATGGGGCAGTCGAGGC
945152 AGCCAACAAAAACATC-AAGAGAATAGT
131 AGCCAACAAAAACATCTAA-AGAATAGT
* * *
945179 CGAATCAAATCATCACAGATAATGTAACTAACTTAAATAACAAAATGATGCAAGCCATCTGCTTT
1 CGAATCAAATCATCACAGACAATGCAACTAACTTAAACAACAAAATGATGCAAGCCATCTGCTTT
945244 CAGTTCAAGATCAAGCATCATAATTCTGTCCCTTATCGCCCAAAGATGAATGGGGCAGTCGAGGC
66 CAGTTCAAGATCAAGCATCATAATTCTGTCCCTTATCGCCCAAAGATGAATGGGGCAGTCGAGGC
945309 AGCCAACAAAAACATCTAAAGAATAGT
131 AGCCAACAAAAACATCTAAAGAATAGT
945336 TGAGAAAATG
Statistics
Matches: 150, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
157 148 0.99
158 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.23
Consensus pattern (157 bp):
CGAATCAAATCATCACAGACAATGCAACTAACTTAAACAACAAAATGATGCAAGCCATCTGCTTT
CAGTTCAAGATCAAGCATCATAATTCTGTCCCTTATCGCCCAAAGATGAATGGGGCAGTCGAGGC
AGCCAACAAAAACATCTAAAGAATAGT
Found at i:946670 original size:28 final size:28
Alignment explanation
Indices: 946635--947072 Score: 569
Period size: 28 Copynumber: 15.6 Consensus size: 28
946625 ATCTTTGAAA
* *
946635 CCACAAGTCAATGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
946663 CCACAAGTCAATGGCAT-CTCTTCAAAGC
1 CCACAAGTCAGTGGCATCCT-TTCAAAGC
946691 CCACAAGTCAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
946719 CCACAAGTCAGTGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
946747 CCACAAGTCAG-GAGCATCTTTTCAAAGC
1 CCACAAGTCAGTG-GCATCCTTTCAAAGC
* * * **
946775 CCATAAGTCAGGGGTATTTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
946803 CCACAAGTTAGTGGCATCCGTTT-AAAGC
1 CCACAAGTCAGTGGCATCC-TTTCAAAGC
946831 CCACAAGTCAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
946859 CTACAAGTTAGTGGCAT-CTCTTCAAAGC
1 CCACAAGTCAGTGGCATCCT-TTCAAAGC
*
946887 CCACAAGTCAGTGGCATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
946915 CCACAAGTCAGTGGCACCCTTTCGAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
946943 CCACAAGTCAGTGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* * * *
946971 CTATAAGTCAGTGGCATCCTTTCGAGGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
**
946999 CCACAAGTCAGTGGCATCCTTTTGAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
947027 GCACAAGTTAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
947055 CCATACAAGTCAGTGGCA
1 CC--ACAAGTCAGTGGCA
947073 ACTTTCTCTA
Statistics
Matches: 361, Mismatches: 39, Indels: 18
0.86 0.09 0.04
Matches are distributed among these distances:
27 8 0.02
28 333 0.92
29 7 0.02
30 13 0.04
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (28 bp):
CCACAAGTCAGTGGCATCCTTTCAAAGC
Found at i:947792 original size:138 final size:138
Alignment explanation
Indices: 947544--947821 Score: 448
Period size: 138 Copynumber: 2.0 Consensus size: 138
947534 CGGAGTTCTT
* * * *
947544 ATGGGATCTAGTGCATTAGTGCAGGGATGGTCACACCCATCCCTTGTTGTAATGACAAACTACAA
1 ATGGGATCCAGTGCAATAGTGCAGGGATGGTCACACCCATCCCTTGATGCAATGACAAACTACAA
* * * * *
947609 ATGCCATTCTTTCTTATTTTGTTCAAACCAATCTTTAACACCCTGGGCATTTGTAGTAGTTGGAG
66 ATGCCATTCTTTATTATTTTGTTCAAACCAATCTTTAACACCCTGGGCAATCGTAGTAGGTGAAG
*
947674 GATTGGAG
131 GATCGGAG
* *
947682 ATGGGATCCAGTGCAATAGTGCAGGTATGGTCGCACCCATCCCTTGATGCAATGACAAACTACAA
1 ATGGGATCCAGTGCAATAGTGCAGGGATGGTCACACCCATCCCTTGATGCAATGACAAACTACAA
947747 ATGCCATTCTTTATTATTTTGTTCAAACCAATCTTTAACACCCTGGGCAATCGTAGTAGGTGAAG
66 ATGCCATTCTTTATTATTTTGTTCAAACCAATCTTTAACACCCTGGGCAATCGTAGTAGGTGAAG
947812 GATCGGAG
131 GATCGGAG
947820 AT
1 AT
947822 ATGTGGGGAC
Statistics
Matches: 128, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
138 128 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (138 bp):
ATGGGATCCAGTGCAATAGTGCAGGGATGGTCACACCCATCCCTTGATGCAATGACAAACTACAA
ATGCCATTCTTTATTATTTTGTTCAAACCAATCTTTAACACCCTGGGCAATCGTAGTAGGTGAAG
GATCGGAG
Found at i:948088 original size:20 final size:20
Alignment explanation
Indices: 948033--948088 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
948023 TTTACCCATG
* * *
948033 TGTATCGAAACATTTTTCAA
1 TGTATCGATACATTCTCCAA
* *
948053 TGTATCGATGCGTTCTCCAA
1 TGTATCGATACATTCTCCAA
948073 TGTATCGATACATTCT
1 TGTATCGATACATTCT
948089 GTCTTTTTAC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATTCTCCAA
Found at i:948124 original size:16 final size:16
Alignment explanation
Indices: 948103--948133 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
948093 TTTTACCTAG
948103 ATGTATCGATACATCA
1 ATGTATCGATACATCA
*
948119 ATGTATGGATACATC
1 ATGTATCGATACATC
948134 TAGTTAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (16 bp):
ATGTATCGATACATCA
Found at i:951888 original size:20 final size:21
Alignment explanation
Indices: 951863--951916 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
951853 TTTACCCACA
951863 TGTATCGATACATTTTGC-AT
1 TGTATCGATACATTTTGCTAT
951883 TGTATCGATACA--TTGCTTAT
1 TGTATCGATACATTTTGC-TAT
951903 TGTATCGATACATT
1 TGTATCGATACATT
951917 CCGGATTTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 4 0.13
20 26 0.87
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.44
Consensus pattern (21 bp):
TGTATCGATACATTTTGCTAT
Found at i:951926 original size:69 final size:69
Alignment explanation
Indices: 951813--951965 Score: 211
Period size: 69 Copynumber: 2.2 Consensus size: 69
951803 TTTTCACAAT
* *
951813 TTGTATCGATACATTGTTCATTGTATTGATACATTCTAAGTTTACCCACATGTATCGATACATTT
1 TTGTATCGATACATTGTTCATTGTATCGATACATTCGAAGTTTACCCACATGTATCGATACATTT
*
951878 TGCA
66 TACA
* *
951882 TTGTATCGATACATTGCTT-ATTGTATCGATACATTCCGGA-TTTACCCAGATGTATCGATACAT
1 TTGTATCGATACATTG-TTCATTGTATCGATACATT-CGAAGTTTACCCACATGTATCGATACAT
951945 TTTACA
64 TTTACA
* *
951951 ATGTATCGACACATT
1 TTGTATCGATACATT
951966 CAGGCATTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
69 71 0.95
70 4 0.05
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.40
Consensus pattern (69 bp):
TTGTATCGATACATTGTTCATTGTATCGATACATTCGAAGTTTACCCACATGTATCGATACATTT
TACA
Found at i:954426 original size:28 final size:27
Alignment explanation
Indices: 954386--954452 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 27
954376 AATTGGAATC
954386 CTCCAACCCCGTTACTTCATC-GGAGATA
1 CTCCAACCCCGTTACTTC-TCAGG-GATA
*
954414 CTCCAACCCCGTTATTTCTCAAGGGATA
1 CTCCAACCCCGTTACTTCTC-AGGGATA
*
954442 TTCCAACCCCG
1 CTCCAACCCCG
954453 ACTTTATATC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
27 2 0.06
28 31 0.89
29 2 0.06
ACGTcount: A:0.24, C:0.37, G:0.13, T:0.25
Consensus pattern (27 bp):
CTCCAACCCCGTTACTTCTCAGGGATA
Found at i:954521 original size:107 final size:106
Alignment explanation
Indices: 954348--954605 Score: 306
Period size: 107 Copynumber: 2.4 Consensus size: 106
954338 CGACTCTGAT
* * * * * *
954348 TTTATTTCCAAAATACCAATTTTTTCACAAT-TGGAATCCTCCAACCCCGTTACTTCATCGGAGA
1 TTTATATCTAAAATACTAA-TTTTTCACAATCGGGGATACTCCAACCCCGTTACTTCATCGGAGA
*
954412 TACTCCAACCCCGTTATTTCTCAA-GGGATATTCCAACCCCGA
65 TACTCCAACCCCGTTATTTC-CAAGGGGATACTCCAACCCCGA
* * * *
954454 CTTTATATCTAAAATATTAATTTTTCATAATCGGGGGTACTCCAACCCCGTTA-TGTCATCGGGG
1 -TTTATATCTAAAATACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTACT-TCATCGGAG
* * *
954518 ATACTCCAATCCCGTTGTTTCCAAGGGGATACTCTAACCCCGA
64 ATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGA
* * *
954561 TTTTTTTCTAAAATACTAATTTTTCACAATTGGGGATACTCCAAC
1 TTTATATCTAAAATACTAATTTTTCACAATCGGGGATACTCCAAC
954606 TCTGATTTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 7
0.83 0.13 0.05
Matches are distributed among these distances:
106 53 0.41
107 75 0.59
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (106 bp):
TTTATATCTAAAATACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTACTTCATCGGAGAT
ACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGA
Found at i:954523 original size:28 final size:29
Alignment explanation
Indices: 954483--954559 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
954473 ATTTTTCATA
*
954483 ATCGGGGGTACTCCAACCCCGTTATGT-C
1 ATCGGGGATACTCCAACCCCGTTATGTCC
* * *
954511 ATCGGGGATACTCCAATCCCGTTGTTTCC
1 ATCGGGGATACTCCAACCCCGTTATGTCC
* *
954540 A-AGGGGATACTCTAACCCCG
1 ATCGGGGATACTCCAACCCCG
954560 ATTTTTTTCT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
28 39 0.95
29 2 0.05
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.25
Consensus pattern (29 bp):
ATCGGGGATACTCCAACCCCGTTATGTCC
Found at i:954601 original size:50 final size:50
Alignment explanation
Indices: 954542--954668 Score: 148
Period size: 51 Copynumber: 2.5 Consensus size: 50
954532 TTGTTTCCAA
* * * * *
954542 GGGGATACTCTAACCCCGATTTTTTTCTAAAATACTAATTTTTCACAATT
1 GGGGATACTCTAACCCCGATTTTTTTCCAAAACACCAATTTCTCACAATC
* * *
954592 GGGGATACTCCAACTCTGATTTTATTTCCAAAACACCAATTTCTCACAATC
1 GGGGATACTCTAACCCCGATTTT-TTTCCAAAACACCAATTTCTCACAATC
* *
954643 AGGGATACTCTAACCCCG-TTATTTTC
1 GGGGATACTCTAACCCCGATTTTTTTC
954669 ACGGGGATAC
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
49 4 0.06
50 23 0.37
51 36 0.57
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.35
Consensus pattern (50 bp):
GGGGATACTCTAACCCCGATTTTTTTCCAAAACACCAATTTCTCACAATC
Found at i:954869 original size:52 final size:51
Alignment explanation
Indices: 954670--954843 Score: 294
Period size: 52 Copynumber: 3.4 Consensus size: 51
954660 GTTATTTTCA
** *
954670 CGGGGATACTCCAACCCCGACCTTATTTCTTAAGCATCGATTTTCCATAAT
1 CGGGGATACTCCAACCCCGGTCTTATTTCTAAAGCATCGATTTTCCATAAT
954721 CGAGGGATACTCCAACCCCGGTCTTATTTCTAAAGCATCGATTTTCCATAAT
1 CG-GGGATACTCCAACCCCGGTCTTATTTCTAAAGCATCGATTTTCCATAAT
954773 CGGGGGATACTCCAACCCCGGTCTTATTTCTAAAGCATCGATTTTCCATAAT
1 C-GGGGATACTCCAACCCCGGTCTTATTTCTAAAGCATCGATTTTCCATAAT
*
954825 CGGGGATACTCCAGCCCCG
1 CGGGGATACTCCAACCCCG
954844 TGGTTATCTC
Statistics
Matches: 117, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
51 19 0.16
52 97 0.83
53 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (51 bp):
CGGGGATACTCCAACCCCGGTCTTATTTCTAAAGCATCGATTTTCCATAAT
Found at i:954869 original size:104 final size:104
Alignment explanation
Indices: 954671--954869 Score: 276
Period size: 104 Copynumber: 1.9 Consensus size: 104
954661 TTATTTTCAC
*
954671 GGGGATACTCCAACCCCGACCTTATTTCTTAAGCATCGATTTTCCATAATCGAGGGATACTCCAA
1 GGGGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTTTCCATAATCGAGGGATACTCCAA
* * **
954736 CCCCGGTCTTATTTCTAAAGCATCGATTTTCCATAATCG
66 CCCCGGTCTTATCTCCAAAGCATAAATTTTCCATAATCG
** *
954775 GGGGATACTCCAACCCCGGTCTTATTTCTAAAGCATCGATTTTCCATAATCG-GGGATACTCCAG
1 GGGGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTTTCCATAATCGAGGGATACTCCAA
* *
954839 CCCC-GTGGTTATCTCCAAAGTATTAAATTTT
66 CCCCGGT-CTTATCTCCAAAGCA-TAAATTTT
954870 TCGTCAGGAG
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
102 2 0.02
103 26 0.31
104 55 0.66
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.31
Consensus pattern (104 bp):
GGGGATACTCCAACCCCGACCTTATTTCTAAAGCATCGATTTTCCATAATCGAGGGATACTCCAA
CCCCGGTCTTATCTCCAAAGCATAAATTTTCCATAATCG
Found at i:963306 original size:40 final size:40
Alignment explanation
Indices: 963262--963338 Score: 154
Period size: 40 Copynumber: 1.9 Consensus size: 40
963252 GGCTCACTCA
963262 TCAAGACAAGGCATGGGGAATGAGATAAAGAGAATTCTCG
1 TCAAGACAAGGCATGGGGAATGAGATAAAGAGAATTCTCG
963302 TCAAGACAAGGCATGGGGAATGAGATAAAGAGAATTC
1 TCAAGACAAGGCATGGGGAATGAGATAAAGAGAATTC
963339 CTTCGCTTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.42, C:0.12, G:0.30, T:0.17
Consensus pattern (40 bp):
TCAAGACAAGGCATGGGGAATGAGATAAAGAGAATTCTCG
Found at i:967218 original size:12 final size:12
Alignment explanation
Indices: 967201--967254 Score: 56
Period size: 12 Copynumber: 4.4 Consensus size: 12
967191 CCACTTTTTT
* *
967201 AAAAAAATAAAC
1 AAAAAAACAAAA
967213 AAAAAAACAAAA
1 AAAAAAACAAAA
967225 AACAAAAA-AAAA
1 AA-AAAAACAAAA
*
967237 AACAAAACAAAGA
1 AAAAAAACAAA-A
967250 AAAAA
1 AAAAA
967255 GAGAGAAGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
11 4 0.11
12 21 0.60
13 10 0.29
ACGTcount: A:0.87, C:0.09, G:0.02, T:0.02
Consensus pattern (12 bp):
AAAAAAACAAAA
Found at i:967227 original size:15 final size:14
Alignment explanation
Indices: 967201--967238 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
967191 CCACTTTTTT
*
967201 AAAAAAATAAACAA
1 AAAAAAAAAAACAA
967215 AAAAACAAAAAACAA
1 AAAAA-AAAAAACAA
967230 AAAAAAAAA
1 AAAAAAAAA
967239 CAAAACAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.89, C:0.08, G:0.00, T:0.03
Consensus pattern (14 bp):
AAAAAAAAAAACAA
Found at i:967231 original size:27 final size:28
Alignment explanation
Indices: 967201--967254 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
967191 CCACTTTTTT
*
967201 AAAAAAATAAACAAAA-AAACAAAAAAC
1 AAAAAAAAAAACAAAACAAACAAAAAAC
*
967228 AAAAAAAAAAACAAAACAAAGAAAAAA
1 AAAAAAAAAAACAAAACAAACAAAAAA
967255 GAGAGAAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.87, C:0.09, G:0.02, T:0.02
Consensus pattern (28 bp):
AAAAAAAAAAACAAAACAAACAAAAAAC
Found at i:967233 original size:17 final size:17
Alignment explanation
Indices: 967209--967254 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
967199 TTAAAAAAAT
*
967209 AAAC-AAAAAAACAA-A
1 AAACAAAAAAAAAAACA
967224 AAACAAAAAAAAAAACA
1 AAACAAAAAAAAAAACA
967241 AAACAAAGAAAAAA
1 AAACAAA-AAAAAA
967255 GAGAGAAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 4 0.15
16 9 0.33
17 8 0.30
18 6 0.22
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (17 bp):
AAACAAAAAAAAAAACA
Found at i:967252 original size:15 final size:13
Alignment explanation
Indices: 967201--967253 Score: 54
Period size: 13 Copynumber: 3.8 Consensus size: 13
967191 CCACTTTTTT
*
967201 AAAAAAATAAACA
1 AAAAAAAAAAACA
967214 AAAAAACAAAAA-A
1 AAAAAA-AAAAACA
967227 CAAAAAAAAAAACA
1 -AAAAAAAAAAACA
967241 AAACAAAGAAAAA
1 AAA-AAA-AAAAA
967254 AGAGAGAAGA
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
13 15 0.44
14 14 0.41
15 5 0.15
ACGTcount: A:0.87, C:0.09, G:0.02, T:0.02
Consensus pattern (13 bp):
AAAAAAAAAAACA
Found at i:967254 original size:19 final size:19
Alignment explanation
Indices: 967202--967243 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
967192 CACTTTTTTA
* *
967202 AAAAAATAAACAAAAAAAC
1 AAAAAACAAAAAAAAAAAC
967221 AAAAAACAAAAAAAAAAAC
1 AAAAAACAAAAAAAAAAAC
967240 AAAA
1 AAAA
967244 CAAAGAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (19 bp):
AAAAAACAAAAAAAAAAAC
Found at i:968370 original size:55 final size:55
Alignment explanation
Indices: 968268--968437 Score: 196
Period size: 61 Copynumber: 3.0 Consensus size: 55
968258 ATGTCTTTTT
* * * * **
968268 CTTTCAAAGCCTACACAAGTTGGTAGCATTTTTTTAGTCCTCAAAGAGCAGGGCAC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGGCAC
* *
968324 CTTTTAAAGCCCACATAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCCTTCTC
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGG--G----CAC
*
968385 CTTTTAAAGCTCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGGC
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGGC
968438 GCTTTCTCCT
Statistics
Matches: 98, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
55 21 0.21
56 24 0.24
57 1 0.01
59 1 0.01
61 51 0.52
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (55 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGGCAC
Found at i:968418 original size:61 final size:61
Alignment explanation
Indices: 968323--968450 Score: 220
Period size: 61 Copynumber: 2.1 Consensus size: 61
968313 GAGCAGGGCA
*
968323 CCTTTTAAAGCCCACATAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCCTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCCTTCT
* * *
968384 CCTTTTAAAGCTCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGGCGCTTTCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCCTTCT
968445 CCTTTT
1 CCTTTT
968451 TCCCTTTAGG
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (61 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCCTTCT
Found at i:968583 original size:156 final size:155
Alignment explanation
Indices: 968300--968591 Score: 444
Period size: 156 Copynumber: 1.9 Consensus size: 155
968290 GTAGCATTTT
* * *
968300 TTTAGTCCTCAAAGAGCAGGGCACCTTTTAAAGCCCACATAAGTTGGTGGCACTTCCTAGTCCTC
1 TTTAGGCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTC
* * *
968365 AAAGAGCAGGACGCCTTCTCCTTTTAAAGCTCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAG
66 AAAGAGCAAGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAG
968430 AGCAGGGCGCTTTCTCCTTTTTCCC
131 AGCAGGGCGCTTTCTCCTTTTTCCC
* * * *
968455 TTTAGGCCTCAAAGCGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAG-CGC
1 TTTAGGCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCCTAGTC-C
*
968519 TCAAAGAGCAAGACACCTT-TGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCA
64 TCAAAGAGCAAGACACCTTCT-CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCA
968583 AAGAGCAGG
128 AAGAGCAGG
968592 ATGCCTTTTA
Statistics
Matches: 123, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
155 49 0.40
156 74 0.60
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (155 bp):
TTTAGGCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTC
AAAGAGCAAGACACCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAG
AGCAGGGCGCTTTCTCCTTTTTCCC
Found at i:968667 original size:117 final size:117
Alignment explanation
Indices: 968461--969127 Score: 723
Period size: 117 Copynumber: 5.7 Consensus size: 117
968451 TCCCTTTAGG
* *
968461 CCTCAAAGCGTAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAG-CGCTCAAAG
1 CCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTC-CTCAAAG
* * *
968525 AGCAAGACACCTTTGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGT
65 AGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGT
* * *
968578 CCTCAAAGAGCAGGATGCCTTTTAAAGCCCACACAAGTTGGTAGCACTTTTCTAGTCCTCAAAAA
1 CCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGA
* *
968643 GCAGAACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGT
66 GCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGT
* * * * * *
968695 CCCCAAAAAGCAGGACACGTGTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGA
1 CCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGA
* * * * *
968760 GAAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGATGGCATTTTCCAGT
66 GCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGT
*
968812 CCTCAAAGAGCAGGACG-CTTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAG
1 CCTCAAAGAGCAGGACGCCTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAG
* * *
968875 AGCTGGACACC-TTT-C----AAAGCCCACACAAGTTGGTGGCA-TTTTTCAGT
65 AGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCT-AGT
* * * * * *
968922 CCTCAAATAGCAGGATGCTTTTTCCTTTTAAAGACCACACAAGTTGGTGGCAC-CTTCCAATCCT
1 CCTCAAAGAGCAGGA--C----GCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCT
* * *
968986 CAAAGAGCAGGATGCCTTTT-CTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTC-AAT
60 CAAAGAGCAGGACGCCTTTTCCTTT-TAAAGCCCACACAAGTTGGTGGCA-CTTTCTAGT
* * * *
969044 CCTCAAAGAGCAAGATGCCTTTTCTTTTCAAAGCCCACACGAGTTTGTGGCAC-TTTCTAGTCCT
1 CCTCAAAGAGCAGGACG-C----CTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCT
*
969108 CAAAGAGTAGGACGCACTTT
60 CAAAGAGCAGGACGC-CTTT
969128 ATTTTCCTCT
Statistics
Matches: 463, Mismatches: 61, Indels: 46
0.81 0.11 0.08
Matches are distributed among these distances:
109 3 0.01
110 39 0.08
112 1 0.00
114 1 0.00
115 3 0.01
116 70 0.15
117 253 0.55
118 1 0.00
121 5 0.01
122 80 0.17
123 4 0.01
124 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (117 bp):
CCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGA
GCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGT
Found at i:969133 original size:61 final size:58
Alignment explanation
Indices: 968480--969119 Score: 610
Period size: 61 Copynumber: 10.9 Consensus size: 58
968470 GTAGGACGCC
* **
968480 TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAG-CGCTCAAAGAGCAAGACACCTTT
1 TTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCTAGTC-CTCAAAGAGCAGGATGCCTTT
968539 GCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGATGCC---
1 ---TTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGATGCCTTT
* * * *
968597 TTTTAAAGCCCACACAAGTTGGTAGCACTTTTCTAGTCCTCAAAAAGCAGAACGCCTTTT
1 TTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCTAGTCCTCAAAGAGCAGGATGCC-TTT
* * * *
968657 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCCCAAAAAGCAGGA--CAC--G
1 --TTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGATGC-CTTT
* * *
968714 TGTTAAAGCCCACACAAGTTGGTGGCATTTTTCTAGTCCTCAAAGAGAAGGATGCCTTTT
1 TTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCTAGTCCTCAAAGAGCAGGATGCC-TTT
* * * *
968774 CCTTTTAAAGCCCACACAAGTTGATGGCATTTTCCAGTCCTCAAAGAGCAGGACG-C--T
1 --TTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGATGCCTTT
* * * * **
968831 TTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCTGGACACC---
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGATGCCTTT
* * * *
968886 TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTTCAGTCCTCAAATAGCAGGATGCTTTTT
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTTCT-AGTCCTCAAAGAGCAGGATGC-CTTT
* * * *
968945 CCTTTTAAAGACCACACAAGTTGGTGGCACCTTCCAATCCTCAAAGAGCAGGATGCCTTT
1 --TTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGATGCCTTT
* *
969005 TCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTTC-AATCCTCAAAGAGCAAGATGCCTTTT
1 T-TTT--AAAGCCCACACAAGTTGGTGGCA-CTTTCTAGTCCTCAAAGAGCAGGATGCC-TTT
* * *
969067 CTTTTCAAAGCCCACACGAGTTTGTGGCACTTTCTAGTCCTCAAAGAGTAGGA
1 -TTTT-AAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGA
969120 CGCACTTTAT
Statistics
Matches: 494, Mismatches: 51, Indels: 67
0.81 0.08 0.11
Matches are distributed among these distances:
54 3 0.01
55 146 0.30
56 44 0.09
57 2 0.00
58 2 0.00
59 4 0.01
60 10 0.02
61 189 0.38
62 93 0.19
63 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (58 bp):
TTTTAAAGCCCACACAAGTTGGTGGCACTTTCTAGTCCTCAAAGAGCAGGATGCCTTT
Found at i:972192 original size:51 final size:51
Alignment explanation
Indices: 972137--972281 Score: 121
Period size: 51 Copynumber: 2.8 Consensus size: 51
972127 TCTCGGTTCC
*
972137 ATTTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAACTCTGATTTT
1 ATTTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAACTCCGATTTT
* * * ** ** * * * *
972188 ATTTCTAAAGCATCGATTTACCACAATCGAGGATATTTCGACTCCGATTTT
1 ATTTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAACTCCGATTTT
* * * *
972239 ATTTCCAAAATACCAATTTTT-TTACAATTGGGAATACTCCAAC
1 ATTTCCAAAACATCAATTTTTCTT--AATCGGGGATACTCCAAC
972282 CCCGTTACTT
Statistics
Matches: 65, Mismatches: 27, Indels: 3
0.68 0.28 0.03
Matches are distributed among these distances:
51 53 0.82
52 12 0.18
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (51 bp):
ATTTCCAAAACATCAATTTTTCTTAATCGGGGATACTCCAACTCCGATTTT
Found at i:972306 original size:28 final size:27
Alignment explanation
Indices: 972272--972341 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 27
972262 ACAATTGGGA
*
972272 ATACTCCAACCCCGTTACTT-CATCGGAG
1 ATACTCCAACCCCGTTACTTCCA-AGG-G
*
972300 ATACTCCAACCCCGTTATTTCCCAAGGG
1 ATACTCCAACCCCGTTACTT-CCAAGGG
972328 ATACTCCAACCCCG
1 ATACTCCAACCCCG
972342 GCTTTATATC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
28 34 0.89
29 2 0.05
30 2 0.05
ACGTcount: A:0.26, C:0.39, G:0.13, T:0.23
Consensus pattern (27 bp):
ATACTCCAACCCCGTTACTTCCAAGGG
Found at i:972410 original size:107 final size:107
Alignment explanation
Indices: 972231--972495 Score: 286
Period size: 107 Copynumber: 2.5 Consensus size: 107
972221 TATTTCGACT
* * * * * * *
972231 CCGATTTTATTTCCAAAATACCAATTTTTTTACAATTGGGAATACTCCAACCCCGTTACTTCATC
1 CCGACTTTATATCTAAAATACTAA-TTTTTCACAATCGGGGATACTCCAACCCCGTTACTTCATC
972296 GGAGATACTCCAACCCCGTT-ATTTCCCAA-GGGATACTCCAACC
65 GGAGATACTCCAACCCCGTTGA-TT-CCAAGGGGATACTCCAACC
* * * * * *
972339 CCGGCTTTATATCTAAAATATTGATTTTTCATAATCGGGGGTACTCCAACCTCGTTA-TGTCATC
1 CCGACTTTATATCTAAAATACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTACT-TCATC
* *
972403 AGG-GATACTCCAATCCCGTTGATTCCAAGGGGATACTCTAACC
65 -GGAGATACTCCAACCCCGTTGATTCCAAGGGGATACTCCAACC
* * * *
972446 TCGATTTTTTTTCTAAAATACTAATTTTTCACAATCGGGGATACTCCAAC
1 CCGACTTTATATCTAAAATACTAATTTTTCACAATCGGGGATACTCCAAC
972496 TCTGATTTTA
Statistics
Matches: 129, Mismatches: 24, Indels: 9
0.80 0.15 0.06
Matches are distributed among these distances:
106 5 0.04
107 104 0.81
108 20 0.16
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (107 bp):
CCGACTTTATATCTAAAATACTAATTTTTCACAATCGGGGATACTCCAACCCCGTTACTTCATCG
GAGATACTCCAACCCCGTTGATTCCAAGGGGATACTCCAACC
Found at i:972503 original size:51 final size:51
Alignment explanation
Indices: 972431--972547 Score: 164
Period size: 51 Copynumber: 2.3 Consensus size: 51
972421 TTGATTCCAA
* * * * * *
972431 GGGGATACTCTAACCTCGATTTTTTTTCTAAAATACTAATTTTTCACAATC
1 GGGGATACTCCAACCTCGATTTTATTTCCAAAACACCAATTTCTCACAATC
972482 GGGGATACTCCAA-CTCTGATTTTATTTCCAAAACACCAATTTCTCACAATC
1 GGGGATACTCCAACCTC-GATTTTATTTCCAAAACACCAATTTCTCACAATC
972533 GGGGATACTCCAACC
1 GGGGATACTCCAACC
972548 CTGTTATTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
50 3 0.05
51 54 0.93
52 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (51 bp):
GGGGATACTCCAACCTCGATTTTATTTCCAAAACACCAATTTCTCACAATC
Found at i:972624 original size:51 final size:51
Alignment explanation
Indices: 972560--972680 Score: 188
Period size: 51 Copynumber: 2.4 Consensus size: 51
972550 GTTATTTTCA
*
972560 CGGGGATACTCCAACCCCGGCCTCATTTCTAAAGCGTCGATTTTCCATAAC
1 CGGGGATACTCCAACCCCGGCCTCATTTCTAAAGCATCGATTTTCCATAAC
* * *
972611 CGGGGATACTCCAACCCCGGCCTTATTTCTAAAGCATCGATTTTTCATAAT
1 CGGGGATACTCCAACCCCGGCCTCATTTCTAAAGCATCGATTTTCCATAAC
* *
972662 CGGAGATACTCCAGCCCCG
1 CGGGGATACTCCAACCCCG
972681 TGGTTATCTC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 64 1.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (51 bp):
CGGGGATACTCCAACCCCGGCCTCATTTCTAAAGCATCGATTTTCCATAAC
Found at i:980563 original size:20 final size:20
Alignment explanation
Indices: 980538--980662 Score: 79
Period size: 20 Copynumber: 5.7 Consensus size: 20
980528 TTTTAACTGG
980538 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
980558 ATGTATCGATACATCTAGGTAAAAAGATAGA
1 ATGTATCGATACAT-T--G-----A-A-A-A
* *
980589 ATGTATCGATGCATTGAAGA
1 ATGTATCGATACATTGAAAA
* * *
980609 ATGTATCGATACATTTATAC
1 ATGTATCGATACATTGAAAA
* *
980629 ATGTATCGATACATCGAACA
1 ATGTATCGATACATTGAAAA
*
980649 ATGTTTCGATACAT
1 ATGTATCGATACAT
980663 CTGGGTAAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
20 58 0.72
21 1 0.01
22 1 0.01
23 2 0.02
28 2 0.02
29 1 0.01
30 2 0.02
31 14 0.17
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:980663 original size:20 final size:20
Alignment explanation
Indices: 980588--980663 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 20
980578 AAAAAGATAG
* * *
980588 AATGTATCGATGCATTGAAG
1 AATGTATCGATACATCGAAC
**
980608 AATGTATCGATACATTTATAC
1 AATGTATCGATACATCGA-AC
980629 -ATGTATCGATACATCGAAC
1 AATGTATCGATACATCGAAC
*
980648 AATGTTTCGATACATC
1 AATGTATCGATACATC
980664 TGGGTAAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 2 0.04
20 45 0.94
21 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATCGAAC
Found at i:982365 original size:20 final size:20
Alignment explanation
Indices: 982340--982391 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
982330 ACCCTAGAAA
982340 GTATCGATACATA-TCAAGAT-
1 GTATCGATACATACTC-A-ATC
982360 GTATCGATACATACTCAATC
1 GTATCGATACATACTCAATC
982380 GTATCGATACAT
1 GTATCGATACAT
982392 GAAACTGGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (20 bp):
GTATCGATACATACTCAATC
Found at i:982455 original size:13 final size:13
Alignment explanation
Indices: 982437--982466 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
982427 GATACATGGG
982437 ACATTGTATCGAT
1 ACATTGTATCGAT
*
982450 ACATTGTATTGAT
1 ACATTGTATCGAT
982463 ACAT
1 ACAT
982467 GAAGAATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (13 bp):
ACATTGTATCGAT
Found at i:985372 original size:13 final size:13
Alignment explanation
Indices: 985354--985378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
985344 ATTACTCAAA
985354 TGTATCGATACAT
1 TGTATCGATACAT
985367 TGTATCGATACA
1 TGTATCGATACA
985379 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:985443 original size:52 final size:52
Alignment explanation
Indices: 985387--985511 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
985377 CACTGATCTT
* *
985387 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
985439 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATAAAA
985491 TGTATCGATACATGCAAGCAA
1 TGTATCGATACATGCAAGCAA
985512 CTTTTCATAT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:989401 original size:155 final size:154
Alignment explanation
Indices: 989206--989995 Score: 887
Period size: 155 Copynumber: 5.1 Consensus size: 154
989196 ATCCCTAGAG
* *
989206 GACTTAAAAATGATCACAAATGGAATGAACCTATCCTAAATACACA-CTTTCGGCATAAAAGCAT
1 GACTT-AAAATGATCATAAATGGGATGAACCTATCCTAAATACACACCTTT-GGCATAAAAGCAT
* *
989270 CCCGGTGACAACCTAAGATTCGGTTTTAGAAAAATTACAAAATTGCCTTTAGGATATACCTTCAA
64 CCCGATGACAACCTAAGACTCGGTTTTAGAAAAATTACAAAA-TGCCTTTAGGATATACCTTCAA
*
989335 CATGAAAGTATCCTAGTAACTTTAAAA
128 CATGAAAGTATCCTAGTAACCTTAAAA
* *
989362 GACTTAAAATTGATCATAAAT-GGATGAACCTATCCTAAATGCATACCTTTGGCATAAAAGCATC
1 GACTTAAAA-TGATCATAAATGGGATGAACCTATCCTAAATACACACCTTTGGCATAAAAGCATC
* * * * * * * *
989426 CTGATGACAACCTAAAACTCCGTTTTAAAAAAATTATGAAAATGCTTTTAAAGA-ATACCTTTAA
65 CCGATGACAACCTAAGACTCGGTTTTAGAAAAATTA-CAAAATGCCTTT-AGGATATACCTTCAA
* * * *
989490 TATAAAAGTATCC-CGTCAACCTTAAAG
128 CATGAAAGTATCCTAGT-AACCTTAAAA
* *
989517 GATTTAAAATGATCATAAATGGGATGAACCTATCCTAAATACACATCTTTGGCATAAAAGCAT-C
1 GACTTAAAATGATCATAAATGGGATGAACCTATCCTAAATACACACCTTTGGCATAAAAGCATCC
* * * * *
989581 CGGTGACAACCTAAGACTCAGTTTTAGAAAAATTTAAAAAATGCCTTTAGTATATGCCTTCAACA
66 CGATGACAACCTAAGACTCGGTTTTAGAAAAA-TTACAAAATGCCTTTAGGATATACCTTCAACA
* * *
989646 TGAAACTATCTTAGTAACCCTAAAA
130 TGAAAGTATCCTAGTAACCTTAAAA
* *
989671 GACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAATGCACACCTTTGGCATACAAGCATC
1 GACTT-AAAATGATCATAAATGGGATGAACCTATCCTAAATACACACCTTTGGCATAAAAGCATC
* * * * * * *
989736 ACGATGACAACCTAGGACTCTGTTTTAAAAAAAAATTACGAAAATGCTCCTAAAG-TATACCTTC
65 CCGATGACAACCTAAGACTCGGTTTT--AGAAAAATTAC-AAAATGC-CTTTAGGATATACCTTC
* * * * * *
989800 GATATAAAAGTAT-CTCGGCAACCTTAAAG
126 AACATGAAAGTATCCT-AGTAACCTTAAAA
* *
989829 GATTTAAAATGATCATAAATGGGATGAACCTATCCTAAATACACACCTTTGGCATAAAAGCATCT
1 GACTTAAAATGATCATAAATGGGATGAACCTATCCTAAATACACACCTTTGGCATAAAAGCATCC
* * ** *
989894 CGATGACAACCTAAGACTTAGG-TTTAGAAAAATTACAAAAATCCCCCTAGG-TATACCTTCGAC
66 CGATGACAACCTAAGAC-TCGGTTTTAGAAAAATTAC-AAAATGCCTTTAGGATATACCTTCAAC
* *
989957 ATGAAAGTATCCTAGTAACCCTAAAG
129 ATGAAAGTATCCTAGTAACCTTAAAA
*
989983 GATTTAAAATGAT
1 GACTTAAAATGAT
989996 TAAAGGAATG
Statistics
Matches: 533, Mismatches: 83, Indels: 38
0.81 0.13 0.06
Matches are distributed among these distances:
153 2 0.00
154 127 0.24
155 228 0.43
156 48 0.09
157 80 0.15
158 45 0.08
159 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.27
Consensus pattern (154 bp):
GACTTAAAATGATCATAAATGGGATGAACCTATCCTAAATACACACCTTTGGCATAAAAGCATCC
CGATGACAACCTAAGACTCGGTTTTAGAAAAATTACAAAATGCCTTTAGGATATACCTTCAACAT
GAAAGTATCCTAGTAACCTTAAAA
Found at i:989871 original size:312 final size:307
Alignment explanation
Indices: 989212--989995 Score: 1126
Period size: 312 Copynumber: 2.5 Consensus size: 307
989202 AGAGGACTTA
* *
989212 AAAATGATCACAAATGGAATGAACCTATCCTAAATACACACTTTCGGCATAAAAGCATCCCGGTG
1 AAAATGATCATAAATGGGATGAACCTATCCTAAATACACACTTT-GGCATAAAAGCAT-CCGGTG
* * * *
989277 ACAACCTAAGATTCGGTTTTAGAAAAATTACAAAATTGCCTTTAGGATATACCTTCAACATGAAA
64 ACAACCTAAGACTCAGTTTTAGAAAAATTACAAAAATGCCTTTAGTATAT-CCTTCAACATGAAA
** * *
989342 GTATCCTAGTAACTTTAAAAGACTTAAAATTGATCATAAATGGATGAACCTATCCTAAATGCATA
128 GTATCCTAGTAACCCTAAAAGACTTAAAAATGATCATAAATGGATGAACCTATCCTAAATGCACA
*
989407 CCTTTGGCATAAAAGCATCCTGATGACAACCTAAAACTCCGTTTTAAAAAAATTATGAAAATGCT
193 CCTTTGGCATAAAAGCATCCTGATGACAACCTAAAACTCCGTTTTAAAAAAATTACGAAAATGCT
** * *
989472 TTTAAAGAATACCTTTAATATAAAAGTATCCCGTCAACCTTAAAGGATTT
258 CCTAAAGAATACCTTCAATATAAAAGTATCCCGGCAACCTTAAAGGATTT
989522 AAAATGATCATAAATGGGATGAACCTATCCTAAATACACATCTTTGGCATAAAAGCATCCGGTGA
1 AAAATGATCATAAATGGGATGAACCTATCCTAAATACACA-CTTTGGCATAAAAGCATCCGGTGA
989587 CAACCTAAGACTCAGTTTTAGAAAAATTTA-AAAAATGCCTTTAGTATATGCCTTCAACATGAAA
65 CAACCTAAGACTCAGTTTTAGAAAAA-TTACAAAAATGCCTTTAGTATAT-CCTTCAACATGAAA
* *
989651 CTATCTTAGTAACCCTAAAAGACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAATGCAC
128 GTATCCTAGTAACCCTAAAAGACTTAAAAATGATCATAAAT-GGATGAACCTATCCTAAATGCAC
* ** *
989716 ACCTTTGGCATACAAGCATCAC-GATGACAACCTAGGACTCTGTTTTAAAAAAAAATTACGAAAA
192 ACCTTTGGCATAAAAGCATC-CTGATGACAACCTAAAACTCCGTTTT--AAAAAAATTACGAAAA
* * *
989780 TGCTCCTAAAGTATACCTTCGATATAAAAGTATCTCGGCAACCTTAAAGGATTT
254 TGCTCCTAAAGAATACCTTCAATATAAAAGTATCCCGGCAACCTTAAAGGATTT
*
989834 AAAATGATCATAAATGGGATGAACCTATCCTAAATACACACCTTTGGCATAAAAGCATCTCGATG
1 AAAATGATCATAAATGGGATGAACCTATCCTAAATACACA-CTTTGGCATAAAAGCATC-CGGTG
* * * ** *
989899 ACAACCTAAGACTTAGGTTTAGAAAAATTACAAAAATCCCCCTAGGTATA-CCTTCGACATGAAA
64 ACAACCTAAGACTCAGTTTTAGAAAAATTACAAAAATGCCTTTA-GTATATCCTTCAACATGAAA
* *
989963 GTATCCTAGTAACCCTAAAGGA-TTTAAAATGAT
128 GTATCCTAGTAACCCTAAAAGACTTAAAAATGAT
989996 TAAAGGAATG
Statistics
Matches: 428, Mismatches: 37, Indels: 17
0.89 0.08 0.04
Matches are distributed among these distances:
309 98 0.23
310 116 0.27
311 15 0.04
312 155 0.36
313 39 0.09
314 5 0.01
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.27
Consensus pattern (307 bp):
AAAATGATCATAAATGGGATGAACCTATCCTAAATACACACTTTGGCATAAAAGCATCCGGTGAC
AACCTAAGACTCAGTTTTAGAAAAATTACAAAAATGCCTTTAGTATATCCTTCAACATGAAAGTA
TCCTAGTAACCCTAAAAGACTTAAAAATGATCATAAATGGATGAACCTATCCTAAATGCACACCT
TTGGCATAAAAGCATCCTGATGACAACCTAAAACTCCGTTTTAAAAAAATTACGAAAATGCTCCT
AAAGAATACCTTCAATATAAAAGTATCCCGGCAACCTTAAAGGATTT
Found at i:993742 original size:40 final size:40
Alignment explanation
Indices: 993543--993768 Score: 145
Period size: 40 Copynumber: 5.7 Consensus size: 40
993533 GTTCAAAAAG
** *
993543 GGTTGACTAGGACAAAA-CTGATAAATCAACAAAAAGTAAA
1 GGTTGACTAGGACAAAATC-GATAAGCCAACAAAGAGTAAA
* * * * * *
993583 GGTTGAATAAGACAAAATTGAAAAGCCAATAAAGAATAAA
1 GGTTGACTAGGACAAAATCGATAAGCCAACAAAGAGTAAA
* ** ** * * *
993623 -GCTGACCGGGATGAAATCAACAAGCCAACAAAGAGTATA
1 GGTTGACTAGGACAAAATCGATAAGCCAACAAAGAGTAAA
* * *** * *
993662 GGTTTA-TCGAGATGCAATCGACAAGCCCAC-AAGAGTAAA
1 GGTTGACTAG-GACAAAATCGATAAGCCAACAAAGAGTAAA
*
993701 GGCTGACTAGGACAAAATCGATAAGCCAACAAAGAGTAAA
1 GGTTGACTAGGACAAAATCGATAAGCCAACAAAGAGTAAA
* * * *
993741 GGTTAACTGGGACAAAACCAATAAGCCA
1 GGTTGACTAGGACAAAATCGATAAGCCA
993769 GTAAAAAATA
Statistics
Matches: 138, Mismatches: 43, Indels: 10
0.72 0.23 0.05
Matches are distributed among these distances:
39 54 0.39
40 84 0.61
ACGTcount: A:0.47, C:0.16, G:0.21, T:0.15
Consensus pattern (40 bp):
GGTTGACTAGGACAAAATCGATAAGCCAACAAAGAGTAAA
Found at i:993781 original size:40 final size:40
Alignment explanation
Indices: 993710--993787 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
993700 AGGCTGACTA
* * * *
993710 GGACAAAATCGATAAGCCAACAAAGAGTAAAGGTTAACTG
1 GGACAAAACCAATAAGCCAACAAAAAATAAAGGTTAACTG
**
993750 GGACAAAACCAATAAGCCAGTAAAAAATAAAGGTTAAC
1 GGACAAAACCAATAAGCCAACAAAAAATAAAGGTTAAC
993788 CATGACAAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.51, C:0.15, G:0.19, T:0.14
Consensus pattern (40 bp):
GGACAAAACCAATAAGCCAACAAAAAATAAAGGTTAACTG
Found at i:999114 original size:20 final size:20
Alignment explanation
Indices: 999072--999121 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
999062 TCTTTTTCAA
*
999072 GTATCGATACAATGCAACAT
1 GTATCGATACAATGAAACAT
* **
999092 GTATCGATACAATTAAATGT
1 GTATCGATACAATGAAACAT
999112 GTATCGATAC
1 GTATCGATAC
999122 TTTTCAAGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACAATGAAACAT
Found at i:1001530 original size:13 final size:13
Alignment explanation
Indices: 1001512--1001550 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1001502 ATAATCCCCC
*
1001512 TGTATCGATACAG
1 TGTATCGATACAA
1001525 TGTATCGATACAA
1 TGTATCGATACAA
1001538 TGTATCGATACAA
1 TGTATCGATACAA
1001551 AGAATGCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1003818 original size:13 final size:13
Alignment explanation
Indices: 1003800--1003825 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1003790 TACAGCAAGT
1003800 ATGTATCGATACA
1 ATGTATCGATACA
1003813 ATGTATCGATACA
1 ATGTATCGATACA
1003826 CAACAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1007903 original size:15 final size:15
Alignment explanation
Indices: 1007883--1007913 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1007873 TAAAAATGTC
*
1007883 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1007898 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1007913 C
1 C
1007914 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1010010 original size:13 final size:13
Alignment explanation
Indices: 1009992--1010030 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
1009982 ACATATTTCT
1009992 TTGTATCGATACA
1 TTGTATCGATACA
1010005 TTGTATCGATACA
1 TTGTATCGATACA
1010018 TTGTATCGATACA
1 TTGTATCGATACA
1010031 GGGTGATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1010194 original size:20 final size:20
Alignment explanation
Indices: 1010151--1010197 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
1010141 AAATCTTTTG
1010151 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1010172 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1010192 CAAAAT
1 CAAAAT
1010198 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.32, C:0.19, G:0.04, T:0.45
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1012490 original size:20 final size:20
Alignment explanation
Indices: 1012465--1012516 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
1012455 ACCCTTAAAA
1012465 GTATCGATACACAATT-CAAT
1 GTATCGATACA-AATTGCAAT
**
1012485 GTATCGATACATGTTGCAAT
1 GTATCGATACAAATTGCAAT
1012505 GTATCGATACAA
1 GTATCGATACAA
1012517 GAAAAAGATG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (20 bp):
GTATCGATACAAATTGCAAT
Found at i:1013514 original size:16 final size:15
Alignment explanation
Indices: 1013478--1013517 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
1013468 TTCATCAATT
*
1013478 TCATTTGGAGCTTCG
1 TCATTTGGAGCTTCC
*
1013493 TCATTTTGAGCTTCC
1 TCATTTGGAGCTTCC
1013508 TCAATTTGGA
1 TC-ATTTGGA
1013518 CGTTTTTATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.42
Consensus pattern (15 bp):
TCATTTGGAGCTTCC
Found at i:1015968 original size:9 final size:9
Alignment explanation
Indices: 1015954--1015984 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
1015944 TCTGAGTCAC
*
1015954 CATCATCAT
1 CATCATCTT
1015963 CATCATCTT
1 CATCATCTT
1015972 CATCATCTT
1 CATCATCTT
1015981 CATC
1 CATC
1015985 GTCCTTAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.26, C:0.35, G:0.00, T:0.39
Consensus pattern (9 bp):
CATCATCTT
Found at i:1017611 original size:13 final size:13
Alignment explanation
Indices: 1017593--1017617 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1017583 CATTTTATGG
1017593 TGTATCGATACAA
1 TGTATCGATACAA
1017606 TGTATCGATACA
1 TGTATCGATACA
1017618 TACTGTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1017633 original size:32 final size:33
Alignment explanation
Indices: 1017570--1017637 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
1017560 CGTTACAAGC
**
1017570 CAATGTATCGATACATTTTATGGTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
*
1017603 CAATGTATCGATACATACTGT-GTGTATCGATA
1 CAATGTATCGATACATACTATGGTGTATCGATA
1017635 CAA
1 CAA
1017638 GTTTGGCTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 14 0.44
33 18 0.56
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (33 bp):
CAATGTATCGATACATACTATGGTGTATCGATA
Found at i:1017733 original size:20 final size:20
Alignment explanation
Indices: 1017691--1017740 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
1017681 TCTTTTTCAA
*
1017691 GTATCGATACAATGCAACAT
1 GTATCGATACAATGAAACAT
* **
1017711 GTATCGATACAATTAAATGT
1 GTATCGATACAATGAAACAT
1017731 GTATCGATAC
1 GTATCGATAC
1017741 TTTTCAGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (20 bp):
GTATCGATACAATGAAACAT
Found at i:1019894 original size:80 final size:80
Alignment explanation
Indices: 1019758--1020111 Score: 279
Period size: 80 Copynumber: 4.6 Consensus size: 80
1019748 TGCTAAATAT
* * ** * * * *
1019758 TTCATC-TTAGGGATAATCTAATGCCATCATCTCTG-AGGGATACTCTAACCTCATTTTTACTTC
1 TTCATCTTTAGGGATACTCCAACCCCACCATCTCTGAAAGGATACTCCAACCCCATTTTTACTTC
*
1019821 TAAAACATTGAATTC
66 CAAAACATTGAATTC
* ** ** *
1019836 TTCATCTTTGGGGATACTCCAACCCCACCATCTCTGAAAGGATACTTTAACCTTATTTTTACTTA
1 TTCATCTTTAGGGATACTCCAACCCCACCATCTCTGAAAGGATACTCCAACCCCATTTTTACTTC
* *
1019901 GAAAACATTGAATTT
66 CAAAACATTGAATTC
* * **
1019916 TTCATCTCTAAGGATACT-----------ATCTCTGAGGGGATACTCCAACCCCATTTTTACTTC
1 TTCATCTTTAGGGATACTCCAACCCCACCATCTCTGAAAGGATACTCCAACCCCATTTTTACTTC
1019970 CAAAACATTGAATTC
66 CAAAACATTGAATTC
* * ** * * * **
1019985 TTCATCTTTTGGGATACTCCAAGCTTACCATATC-CAAGAGAATACTCCAACCCTGTTTTTACTT
1 TTCATCTTTAGGGATACTCCAACCCCACCATCTCTGAA-AGGATACTCCAACCCCATTTTTACTT
* *
1020049 CCAAAGCATTAAATTC
65 CCAAAACATTGAATTC
* *
1020065 TTTATCTTTAGGGATACTCCAACCCCACCATCTC-CAAAGGGATACTC
1 TTCATCTTTAGGGATACTCCAACCCCACCATCTCTGAAA-GGATACTC
1020112 TCACCTTGGT
Statistics
Matches: 218, Mismatches: 43, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
69 57 0.26
78 6 0.03
79 25 0.11
80 130 0.60
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.34
Consensus pattern (80 bp):
TTCATCTTTAGGGATACTCCAACCCCACCATCTCTGAAAGGATACTCCAACCCCATTTTTACTTC
CAAAACATTGAATTC
Found at i:1020080 original size:149 final size:148
Alignment explanation
Indices: 1019786--1020082 Score: 373
Period size: 149 Copynumber: 2.0 Consensus size: 148
1019776 TAATGCCATC
* * *
1019786 ATCTCTGAGGGATACTCTAACCTCATTTTTACTTCTAAAACATTGAATTCTTCATCTTTGGGGAT
1 ATCTCTGAGGGATACTCCAACCCCATTTTTACTTCCAAAACATTGAATTCTTCATCTTTGGGGAT
* * * ** * * *
1019851 ACTCCAACCCCACCATCTCTGAAAGGATACTTTAACCTTATTTTTACTTAGAAAACATTGAATTT
66 ACTCCAACCCCACCATATCTCAAAGAATACTCCAACCCTATTTTTACTTACAAAACATTAAATTT
1019916 TTCATCTCTAAGGATACT
131 TTCATCTCTAAGGATACT
*
1019934 ATCTCTGAGGGGATACTCCAACCCCATTTTTACTTCCAAAACATTGAATTCTTCATCTTTTGGGA
1 ATCTCTGA-GGGATACTCCAACCCCATTTTTACTTCCAAAACATTGAATTCTTCATCTTTGGGGA
* ** * * *
1019999 TACTCCAAGCTTACCATATC-CAAGAGAATACTCCAACCCTGTTTTTACTTCCAAAGCATTAAAT
65 TACTCCAACCCCACCATATCTCAA-AGAATACTCCAACCCTATTTTTACTTACAAAACATTAAAT
* *
1020063 TCTTT-ATCTTTAGGGATACT
129 T-TTTCATCTCTAAGGATACT
1020083 CCAACCCCAC
Statistics
Matches: 126, Mismatches: 20, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
148 10 0.08
149 113 0.90
150 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.11, T:0.36
Consensus pattern (148 bp):
ATCTCTGAGGGATACTCCAACCCCATTTTTACTTCCAAAACATTGAATTCTTCATCTTTGGGGAT
ACTCCAACCCCACCATATCTCAAAGAATACTCCAACCCTATTTTTACTTACAAAACATTAAATTT
TTCATCTCTAAGGATACT
Found at i:1033736 original size:16 final size:16
Alignment explanation
Indices: 1033715--1033746 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1033705 CATCTACCAC
1033715 ACTGTGTCAAAGGCTA
1 ACTGTGTCAAAGGCTA
1033731 ACTGTGTCAAAGGCTA
1 ACTGTGTCAAAGGCTA
1033747 GTCATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (16 bp):
ACTGTGTCAAAGGCTA
Found at i:1033929 original size:55 final size:54
Alignment explanation
Indices: 1033839--1033946 Score: 171
Period size: 55 Copynumber: 2.0 Consensus size: 54
1033829 GATAGCCCTC
* * * *
1033839 AAAAACCCAATGACTGAGAAGGATGCTTCAGAATTTCTAAAGTTCATCAAGCAT
1 AAAAACCCAATGACTAAGAAAGATGCTACAAAATTTCTAAAGTTCATCAAGCAT
1033893 AAAACACCCAATGACTAAGAAAGATGCTACAAAATTTCTAAAGTTCATCAAGCA
1 AAAA-ACCCAATGACTAAGAAAGATGCTACAAAATTTCTAAAGTTCATCAAGCA
1033947 CAACTGTAGA
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
54 4 0.08
55 45 0.92
ACGTcount: A:0.44, C:0.19, G:0.14, T:0.22
Consensus pattern (54 bp):
AAAAACCCAATGACTAAGAAAGATGCTACAAAATTTCTAAAGTTCATCAAGCAT
Found at i:1035567 original size:18 final size:18
Alignment explanation
Indices: 1035546--1035580 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
1035536 TTGGACATGT
*
1035546 CAAAATGCATGGAATCAA
1 CAAAATGCATGAAATCAA
1035564 CAAAATGCATGAAATCA
1 CAAAATGCATGAAATCA
1035581 TGACACAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.17, G:0.14, T:0.17
Consensus pattern (18 bp):
CAAAATGCATGAAATCAA
Found at i:1036667 original size:20 final size:21
Alignment explanation
Indices: 1036642--1036696 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
1036632 ACATATCAAG
1036642 TATGTATTGATACATTCACT-
1 TATGTATTGATACATTCACTA
* *
1036662 TATGTATCGATACATTTACTA
1 TATGTATTGATACATTCACTA
* *
1036683 TTTATATTGATACA
1 TATGTATTGATACA
1036697 AATTGTAGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 18 0.62
21 11 0.38
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (21 bp):
TATGTATTGATACATTCACTA
Found at i:1041660 original size:15 final size:15
Alignment explanation
Indices: 1041640--1041675 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
1041630 TCTTTTTGGC
*
1041640 CAAAAAAATAAAAAA
1 CAAAAAAACAAAAAA
1041655 CAAAAAAACAAAAAA
1 CAAAAAAACAAAAAA
*
1041670 TAAAAA
1 CAAAAA
1041676 CAAAACAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.86, C:0.08, G:0.00, T:0.06
Consensus pattern (15 bp):
CAAAAAAACAAAAAA
Found at i:1042867 original size:76 final size:77
Alignment explanation
Indices: 1042711--1042922 Score: 210
Period size: 76 Copynumber: 2.9 Consensus size: 77
1042701 ATGGCACCTT
* ** *
1042711 TTTCATTTTTCTTTTTCAAAGCCCACACAAGTTAGTATCA--CTTTTTACCTTTTCAGTCCTT-A
1 TTTCCTTTTTCTTTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTTTACCTTTTTAGT-CTTCA
* **
1042773 AAGAGTAGGATGTT
65 AAAAGTAGGA-GCA
* * * *
1042787 TTTCCTTTTTCTTTTTCAAAGCCCATACAAGTTTGTGGCACCCTTTATCCCTTTTTAGTCTTCAA
1 TTTCCTTTTTCTTTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTTTACCTTTTTAGTCTTCAA
1042852 AAAGTAGGA-CA
66 AAAGTAGGAGCA
* * *
1042863 TTTCC---TT-TTTTT-AAA-CCCACACAAGTTGGTGGCACCCTTTTTATCTTTTTAGTCCTCAA
1 TTTCCTTTTTCTTTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTTTACCTTTTTAGTCTTCAA
1042922 A
66 A
1042923 GAGCAGGATG
Statistics
Matches: 116, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
70 39 0.34
71 3 0.03
72 5 0.04
73 2 0.02
76 40 0.34
77 3 0.03
78 24 0.21
ACGTcount: A:0.24, C:0.23, G:0.11, T:0.42
Consensus pattern (77 bp):
TTTCCTTTTTCTTTTTCAAAGCCCACACAAGTTAGTGGCACCCTTTTTACCTTTTTAGTCTTCAA
AAAGTAGGAGCA
Found at i:1043216 original size:44 final size:43
Alignment explanation
Indices: 1043088--1043215 Score: 148
Period size: 44 Copynumber: 2.9 Consensus size: 43
1043078 GATGCTTTTC
*
1043088 TTTTAAAGCCCACACAAGCTGATGGCACCTCTTTCCTTTTTCTT
1 TTTTAAAGCCCACACAAGCTGGTGGCACCT-TTTCCTTTTTCTT
* * * * **
1043132 TTTCAAAGCTCATACAAGCTAGTGGCATATTTTTCCTTTTTCTT
1 TTTTAAAGCCCACACAAGCTGGTGGCA-CCTTTTCCTTTTTCTT
* * *
1043176 TTTTAAAGCCCACCCAAGCTGGTGGTACCTTTTACTTTTT
1 TTTTAAAGCCCACACAAGCTGGTGGCACCTTTTCCTTTTT
1043216 TAGTCTTCAA
Statistics
Matches: 67, Mismatches: 16, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
43 10 0.15
44 56 0.84
45 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.12, T:0.41
Consensus pattern (43 bp):
TTTTAAAGCCCACACAAGCTGGTGGCACCTTTTCCTTTTTCTT
Found at i:1043576 original size:21 final size:21
Alignment explanation
Indices: 1043550--1043605 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
1043540 ACACAATTCA
1043550 ATGTATCGATACATCAAAAAT
1 ATGTATCGATACATCAAAAAT
1043571 ATGTATCGATACATCAAAAAT
1 ATGTATCGATACATCAAAAAT
1043592 ATGTATCGATACAT
1 ATGTATCGATACAT
1043606 GTCATTGGGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.45, C:0.14, G:0.11, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATCAAAAAT
Found at i:1043674 original size:13 final size:13
Alignment explanation
Indices: 1043656--1043681 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1043646 ACACCAAAGT
1043656 ATGTATCGATACA
1 ATGTATCGATACA
1043669 ATGTATCGATACA
1 ATGTATCGATACA
1043682 TAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1049860 original size:13 final size:13
Alignment explanation
Indices: 1049842--1049880 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
1049832 ACATTTTTCT
1049842 TTGTATCGATACA
1 TTGTATCGATACA
1049855 TTGTATCGATACA
1 TTGTATCGATACA
* *
1049868 CTGTATCAATACA
1 TTGTATCGATACA
1049881 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1050047 original size:20 final size:20
Alignment explanation
Indices: 1050004--1050049 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
1049994 AAATCTTTTG
1050004 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
1050025 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
1050045 CAAAA
1 CAAAA
1050050 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:1052478 original size:13 final size:13
Alignment explanation
Indices: 1052460--1052485 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1052450 ACACCAAAGT
1052460 ATGTATCGATACA
1 ATGTATCGATACA
1052473 ATGTATCGATACA
1 ATGTATCGATACA
1052486 GAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1052570 original size:20 final size:22
Alignment explanation
Indices: 1052540--1052582 Score: 72
Period size: 20 Copynumber: 2.0 Consensus size: 22
1052530 CTATATTTTC
1052540 AAATATGTATCGATACA-TCAA
1 AAATATGTATCGATACATTCAA
1052561 AAAT-TGTATCGATACATTCAA
1 AAATATGTATCGATACATTCAA
1052582 A
1 A
1052583 CGGGAAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (22 bp):
AAATATGTATCGATACATTCAA
Found at i:1053501 original size:71 final size:72
Alignment explanation
Indices: 1053426--1053588 Score: 213
Period size: 71 Copynumber: 2.3 Consensus size: 72
1053416 TAAAAAAAAG
* * *
1053426 GCCTAAACAAGTTGGTAGCACCCCTTTTATCCT-TTTAGTCCTCAAACAACAGGATACATTTTTC
1 GCCTATACAAGTTGGTGGCACCCCTTTTATCCTCTTTAGTCCTCAAACAACAAGATACATTTTTC
1053490 TTTTAAA
66 TTTTAAA
* * * * * * * *
1053497 GCCTATACAA-CTGGTGGCACTCCTTTTATCCTCTTTAGTCTTGAAAGAGCAAGATGCTTTTTTC
1 GCCTATACAAGTTGGTGGCACCCCTTTTATCCTCTTTAGTCCTCAAACAACAAGATACATTTTTC
1053561 TTTTAAA
66 TTTTAAA
1053568 GCCTATACAAGTTGGTGGCAC
1 GCCTATACAAGTTGGTGGCAC
1053589 TTTTTATCCC
Statistics
Matches: 78, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
70 19 0.24
71 50 0.64
72 9 0.12
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (72 bp):
GCCTATACAAGTTGGTGGCACCCCTTTTATCCTCTTTAGTCCTCAAACAACAAGATACATTTTTC
TTTTAAA
Found at i:1057009 original size:80 final size:79
Alignment explanation
Indices: 1056857--1057120 Score: 293
Period size: 80 Copynumber: 3.3 Consensus size: 79
1056847 GGATAACGTC
* * * * *
1056857 GAATTTTTCATC-TTATGGGATACTCAGCCCCACCATCT-TAGAGGGGATACTCCAACCCTATTA
1 GAATTATTCATCTTTA-GGGATACTCAACCTCACCATCTCT-GAGAGGATACTCCAACCCTATTT
*
1056920 TTACTTCCAAAACATT
64 TTACATCCAAAACATT
* * *
1056936 GAATTATTCATCTTTAAGGATACTACAACCTCACCATCTCTGAGAGGATACTCCAGCCTTATTTT
1 GAATTATTCATCTTTAGGGATACT-CAACCTCACCATCTCTGAGAGGATACTCCAACCCTATTTT
1057001 TACATCCAAAACATT
65 TACATCCAAAACATT
* * * * *
1057016 GAATTCTTCATCTTTGGGGATACCCCAACCTCACCATCTCTAAGAGGATACTCCAACCCCATTTT
1 GAATTATTCATCTTTAGGGATA-CTCAACCTCACCATCTCTGAGAGGATACTCCAACCCTATTTT
** *
1057081 TA-ATTCCAAAATGTC
65 TACA-TCCAAAACATT
1057096 GAA-TACTTCATCTTTAGGGATACTC
1 GAATTA-TTCATCTTTAGGGATACTC
1057121 CAGCCCCACC
Statistics
Matches: 156, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
79 22 0.14
80 132 0.85
81 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.32
Consensus pattern (79 bp):
GAATTATTCATCTTTAGGGATACTCAACCTCACCATCTCTGAGAGGATACTCCAACCCTATTTTT
ACATCCAAAACATT
Found at i:1057131 original size:80 final size:80
Alignment explanation
Indices: 1056863--1057172 Score: 283
Period size: 80 Copynumber: 3.9 Consensus size: 80
1056853 CGTCGAATTT
* * * * *
1056863 TTCATC-TTATGGGATACT-CAGCCCCACCATCT-TAGAGGGGATACTCCAACCCTATTATTACT
1 TTCATCTTTA-GGGATACTCCAACCCCACCATCTCTA-AGAGGATACTCCAACCCCATTTTTAAT
*
1056925 TCCAAAACATTGAATTA-
64 TCCAAAACATCGAA-TAC
* * * * * **
1056942 TTCATCTTTAAGGATACTACAACCTCACCATCTCTGAGAGGATACTCCAGCCTTATTTTTACA-T
1 TTCATCTTTAGGGATACTCCAACCCCACCATCTCTAAGAGGATACTCCAACCCCATTTTTA-ATT
* *
1057006 CCAAAACATTGAATTC
65 CCAAAACATCGAATAC
* * *
1057022 TTCATCTTTGGGGATACCCCAACCTCACCATCTCTAAGAGGATACTCCAACCCCATTTTTAATTC
1 TTCATCTTTAGGGATACTCCAACCCCACCATCTCTAAGAGGATACTCCAACCCCATTTTTAATTC
**
1057087 CAAAATGTCGAATAC
66 CAAAACATCGAATAC
* * * * *
1057102 TTCATCTTTAGGGATACTCCAGCCCCACCATTTCTAATG-GGGTACTCCCAA-CCCAGCTTTTAC
1 TTCATCTTTAGGGATACTCCAACCCCACCATCTCTAA-GAGGATACT-CCAACCCCA-TTTTTAA
1057165 TTCCAAAA
63 TTCCAAAA
1057173 TCTCACCCAC
Statistics
Matches: 192, Mismatches: 30, Indels: 16
0.81 0.13 0.07
Matches are distributed among these distances:
79 15 0.08
80 158 0.82
81 19 0.10
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.30
Consensus pattern (80 bp):
TTCATCTTTAGGGATACTCCAACCCCACCATCTCTAAGAGGATACTCCAACCCCATTTTTAATTC
CAAAACATCGAATAC
Found at i:1057447 original size:80 final size:79
Alignment explanation
Indices: 1057178--1057448 Score: 260
Period size: 80 Copynumber: 3.4 Consensus size: 79
1057168 CAAAATCTCA
* * * * *
1057178 CCCACCATCTCTGAAGGGATACTTCAA-CCTGGTTTTTACTTTCAAAATGTC-AAATTCTTCAAC
1 CCCACCATCTCTGAAAGGATACTCCAACCCT-ATTTTTACTTCCAAAATGTCAAAATT-TTCATC
*
1057241 TTTGGGGATACTCTAAC
64 TTT-GGGATACTCCAAC
* * * * * *
1057258 CCCACCATCTCTGAGAGGATACTCCAACTCTGTTTTCACTTCCAAAATGTCAAATTTTTCATCTC
1 CCCACCATCTCTGAAAGGATACTCCAACCCTATTTTTACTTCCAAAATGTCAAAATTTTCATCTT
* * * *
1057323 TAGGTTACTTCAGC
66 TGGGATACTCCAAC
* * ** * **
1057337 CCCACC-CCTTCGGAGGGGATGCTCCAACCCTATTTTTACTTCCAAAACATCAAAATTTTCATCT
1 CCCACCATC-TCTGAAAGGATACTCCAACCCTATTTTTACTTCCAAAATGTCAAAATTTTCATCT
1057401 TTCGGGATACTCCAAC
65 TT-GGGATACTCCAAC
*
1057417 CCCACCATCTTTGAAAGGATACTCCAACCCTA
1 CCCACCATCTCTGAAAGGATACTCCAACCCTA
1057449 CTATTTCTGA
Statistics
Matches: 151, Mismatches: 35, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
78 1 0.01
79 61 0.40
80 82 0.54
81 7 0.05
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (79 bp):
CCCACCATCTCTGAAAGGATACTCCAACCCTATTTTTACTTCCAAAATGTCAAAATTTTCATCTT
TGGGATACTCCAAC
Found at i:1057701 original size:80 final size:78
Alignment explanation
Indices: 1057527--1057710 Score: 194
Period size: 80 Copynumber: 2.3 Consensus size: 78
1057517 CTCTAATCCC
* * * *
1057527 TTTTTAGTTTAAAAACATTGAATTCTTAATCTTTGGGGATACTCCAACCTACCAACTCTAAAGGG
1 TTTTTACTTTAAAAACATTAAATTCTTAATC-TTGGGAATACTCAAACCTACCAACTCTAAAGGG
*
1057592 ATACTCCAACCCTG
65 ATAATCCAACCCTG
** * *
1057606 TTTTTACTTCCAAAACATTAAATTCTTCAAGTC-TGGGAATACTTCAAACCTACCATCT-TTAAG
1 TTTTTACTTTAAAAACATTAAATTCTT-AA-TCTTGGGAATAC-TCAAACCTACCAACTCTAAAG
*
1057669 GAGATAATCTAA-CCTCG
63 G-GATAATCCAACCCT-G
*
1057686 TTTTTACTTTTAAAACATTAAATTC
1 TTTTTACTTTAAAAACATTAAATTC
1057711 ATCATCTTTA
Statistics
Matches: 88, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
79 39 0.44
80 47 0.53
81 2 0.02
ACGTcount: A:0.33, C:0.21, G:0.10, T:0.36
Consensus pattern (78 bp):
TTTTTACTTTAAAAACATTAAATTCTTAATCTTGGGAATACTCAAACCTACCAACTCTAAAGGGA
TAATCCAACCCTG
Found at i:1058057 original size:60 final size:60
Alignment explanation
Indices: 1057987--1058121 Score: 207
Period size: 60 Copynumber: 2.2 Consensus size: 60
1057977 TACATAAGTG
* * * *
1057987 AATGTATCGATATATGCTTGAAATGTATCGATACAAAACCACATTGCATTCTAGAAAGGA
1 AATGTATCGATACATGCCTGAAATGTATCGATACAAAACCACACTACATTCTAGAAAGGA
* * *
1058047 AATGTATCGATACATGCCTGAAATGTATCGATACAAAAGCACCCTATATTCTAGAAAGGA
1 AATGTATCGATACATGCCTGAAATGTATCGATACAAAACCACACTACATTCTAGAAAGGA
1058107 AATGTATCGATACAT
1 AATGTATCGATACAT
1058122 AAGTAAATGT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 68 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (60 bp):
AATGTATCGATACATGCCTGAAATGTATCGATACAAAACCACACTACATTCTAGAAAGGA
Found at i:1059928 original size:19 final size:20
Alignment explanation
Indices: 1059904--1059955 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
1059894 ACATTATGCT
* *
1059904 TTGTATCGATGCATGCTC-A
1 TTGTATCGATACATACTCAA
*
1059923 TTGTATCAATACATACTCAA
1 TTGTATCGATACATACTCAA
*
1059943 TTATATCGATACA
1 TTGTATCGATACA
1059956 AGAAACTGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 15 0.56
20 12 0.44
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATACTCAA
Found at i:1060025 original size:33 final size:33
Alignment explanation
Indices: 1059983--1060049 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
1059973 CCCTAAGTGA
*
1059983 AATGTATCGATACATG-GGACATTATATCGATAC
1 AATGTATCGATACATGAAGA-ATTATATCGATAC
**
1060016 AATGTATCGATATGTGAAGAATTATATCGATAC
1 AATGTATCGATACATGAAGAATTATATCGATAC
1060049 A
1 A
1060050 TTATGCCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (33 bp):
AATGTATCGATACATGAAGAATTATATCGATAC
Found at i:1064635 original size:20 final size:20
Alignment explanation
Indices: 1064612--1064684 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1064602 ACAATTCAAA
1064612 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
1064632 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
1064653 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
1064673 GTATCGATACAT
1 GTATCGATACAT
1064685 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:1064656 original size:21 final size:21
Alignment explanation
Indices: 1064630--1064705 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1064620 ACATGTTGCA
1064630 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
1064651 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
1064671 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
1064692 ATGTATCGATACAT
1 ATGTATCGATACAT
1064706 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:1064663 original size:41 final size:41
Alignment explanation
Indices: 1064612--1064705 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1064602 ACAATTCAAA
*
1064612 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1064653 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1064694 GTATCGATACAT
1 GTATCGATACAT
1064706 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:1064762 original size:13 final size:13
Alignment explanation
Indices: 1064744--1064769 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1064734 TGCAGCAAGT
1064744 ATGTATCGATACA
1 ATGTATCGATACA
1064757 ATGTATCGATACA
1 ATGTATCGATACA
1064770 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1068852 original size:15 final size:15
Alignment explanation
Indices: 1068832--1068862 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1068822 TAAAAATGTC
*
1068832 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1068847 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1068862 C
1 C
1068863 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1070940 original size:13 final size:13
Alignment explanation
Indices: 1070922--1070946 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1070912 GGAAATTCTA
1070922 TGTATCGATACAC
1 TGTATCGATACAC
1070935 TGTATCGATACA
1 TGTATCGATACA
1070947 GGGTGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:1072773 original size:31 final size:31
Alignment explanation
Indices: 1072738--1072798 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
1072728 AATTTTGATA
1072738 TGAATTACTTGATTAAGGGGGAGATTTTTTT
1 TGAATTACTTGATTAAGGGGGAGATTTTTTT
1072769 TGAATTACTTGATTAAGGGGGAGATTTTTT
1 TGAATTACTTGATTAAGGGGGAGATTTTTT
1072799 AATAAACGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.44
Consensus pattern (31 bp):
TGAATTACTTGATTAAGGGGGAGATTTTTTT
Found at i:1073442 original size:20 final size:20
Alignment explanation
Indices: 1073419--1073491 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
1073409 ACAATTCAAA
1073419 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
1073439 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
1073460 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
1073480 GTATCGATACAT
1 GTATCGATACAT
1073492 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:1073463 original size:21 final size:21
Alignment explanation
Indices: 1073437--1073512 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
1073427 ACATGTTGCA
1073437 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
1073458 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
1073478 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
1073499 ATGTATCGATACAT
1 ATGTATCGATACAT
1073513 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:1073470 original size:41 final size:41
Alignment explanation
Indices: 1073419--1073512 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
1073409 ACAATTCAAA
*
1073419 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1073460 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1073501 GTATCGATACAT
1 GTATCGATACAT
1073513 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Done.