Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold536
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6218
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.36
Found at i:2597 original size:476 final size:476
Alignment explanation
Indices: 1--6218 Score: 10285
Period size: 475 Copynumber: 13.2 Consensus size: 476
1 GACAATTATCGATTCTCGTAACTGTCTCC-TTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
* * *
65 TTCTTTAGGATAAATGATATTGATGCTTTGGTGTCGCAAAGTAAAGGTTTCGGCTCTACCGTTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGC-AAGAAAAGGTTTCGCCTCTACCGTTTT
*
130 TGTTAGAATCAAA-TTTGGCTCTTAAAT-AGACAAACATGAATAGTCATACTAATCCCTAATCTT
130 TGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTT
193 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATA-ACGAAAATTGATGCTTTGGATT
195 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACG-AAATTGATGCTTTGGATT
257 CGCAAGAATGGATTTCTTCACTCCAATTT-TGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAA
259 CGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAA
* *
321 AAAGG-TTCTAGTAATAATCTTC-TTCA-TTTGTGATTACGCACTATAAACACATTCTTTTCAGT
324 AAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGT
*
383 AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA-CA-TTCTTTACCCTATTTTTCCTTAA
389 TGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTA-TTTTCCTTAA
446 AATAAAAATTCAT-CCTGAA-TAT
453 AATAAAAATTCATCCCTGAATTAT
* *
468 GAC-A--ATCGATTCTCGGAACTGTCTCCATTCTTTTCAAGA-TTGGAACTACGAAACCCAATCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAG-AACCCAATCC
*
529 CTTC-TTAGGATAAATGATA-TGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACTGTTTT
65 CTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTT
592 TGTTAGAATCAAAG-TTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTT
130 TGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTT
656 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
195 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
* * *
721 GCAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAAA
260 GCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAA
786 AAGGATTCTAGTAATGATCTTCA-TCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTT
325 AAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTT
*
850 GGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTA-TTTCCTTAAAA
390 GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAA
914 TAAAAATTCATCCCTGAATTAT
455 TAAAAATTCATCCCTGAATTAT
* ** *
936 GACAATTATCGATTTTCGTAACTGTCTGTATTCTTTTCAAGATTTGGATCTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
*
1001 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGTAAAGGTTTCGCCTCTACCGTTTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
*
1066 GTTAGAATCAAAGTTTGACTCTTAAATAAGACAAACATG-ATAGTCATACTAATCCCTAATCTTT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
*
1130 TCAGGATTAGGCAACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTCGGATTC
196 TCAGGATTAGGC-ACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
* * *
1195 GCAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAAA
260 GCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAA
1260 AAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTT
325 AAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTT
*
1325 GGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAA
390 GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAA
1390 T-AAAATTCATCCCTGAATTAT
455 TAAAAATTCATCCCTGAATTAT
* *
1411 GACAATTATCGATTCTCGTAACTGTCTCTATTCTTTTCAAGATTTGGATCTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
1476 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCG-TTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
1540 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
1605 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
196 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
* * * * *
1670 CAAGAATGGATTTTTTTTCACTCCAATTTGTATAAAGTCTAAGTTCGTGCTTCAAATGAGACAAA
261 CAAGAATGGA--TTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAA
* * * * * ** *
1735 CAAGGATTCTAGTAA-AATCTTCATTAATTTTGTGATTAGGCACTATAAATACCTTCTTTTC-CT
324 AAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGT
* * * * *
1798 TATGATAAATGATATTCATGACTTTC-TTTGCATGGAAATCATTTCTTTACCCTATTTTACATAA
389 T-GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAA
1862 AATAAAAATTCATCCCT-AAGTTAT
453 AATAAAAATTCATCCCTGAA-TTAT
1886 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACT--GAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
* * *
1949 TTCTTTAGGATAAATGATAGTGATGCTTTGG-GTCGCAAGAAAAGGTTTCGCCTCTACTG-TTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
2012 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
2077 TCAGGATTAGGCCACTATC-ACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
196 TCAGGATTAGG-CACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
* * * *
2141 GCAAGGATGGATTTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCGAATGAGACAAA
260 GCAAGAATGGA-TTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAA
*
2206 AAAGGATTCTAGTAATGATCTTCCTTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGT
324 AAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGT
*
2271 TGGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAA
389 TGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAA
2336 ATAAAAATTCATCCCTGAATTAT
454 ATAAAAATTCATCCCTGAATTAT
2359 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGA-TTGGAACTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
* * * *
2423 TTCTTTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGTAAAGGTTTCGGCTCTACCGTTTCT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
*
2488 GTTAGAATCAAAGTTTGGCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
2553 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
196 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
2618 CAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAAA
261 CAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAAA
* * * * *
2683 AGGGTTCTAGTAATAATCTTCTTTCATTTTGTGATTACGCACTATAAACACATTCTTTTCAGTAG
326 AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTTG
*
2748 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCAATTCTTTACCCTATTTTCCTTAAAAT
391 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAAT
2813 AAAAATTCATCCCTGAATTAT
456 AAAAATTCATCCCTGAATTAT
2834 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
* *
2899 TTCTTTAGGATAAATGATATTGATGCTTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACTGTTTT
66 TTCATTAGGATAAATGATATTGATGC-TTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTT
* *
2964 TGTTAGAATCAAAGTTGGCCTCTTAAATAAGACAAACATGAATAGTCGTACTAATCCCTAATCTT
130 TGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTT
3029 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
195 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
* * *
3094 GCAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAAA
260 GCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGAC-AAA
3159 AAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTT-AGT
324 AAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGT
*
3223 TGGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAA
389 TGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAA
3288 ATAAAAATTCATCCCTGAATTAT
454 ATAAAAATTCATCCCTGAATTAT
* * *
3311 GACAATTATCGATTTTCGTAACTGTCTCTATTCTTTTCAAGATTTGGATCTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
*
3376 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGTAAAGGTTTCGCCTCTACCGTTTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
*
3441 GTTAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
3506 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
196 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
* * *
3571 CAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAAAA
261 CAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAAA
3636 AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTTG
326 AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTTG
*
3701 GATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAAT
391 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAAT
3766 AAAAATTCATCCCTGAATTAT
456 AAAAATTCATCCCTGAATTAT
* *
3787 GACAATTATCGATTCTCGTAACTGTCTCTATTCTTTTCAAGATTTGGATCTAAGAACCCAAATCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCC-AATCC
3852 CTTCATTAGGATAAATGA-ATTGATGC-TTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTT
65 CTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTT
3915 TGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTT
130 TGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTT
3980 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
195 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
* * * * *
4045 GCAAGAAAATGGATTTTTTTCACTCCAATTTGTATAAAGTCTAAGTTCGTGCTTCAAATGAGACA
260 GCAAG--AATGGA-TTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACA
* * * * * *
4110 AACAAGGATTCTAGTAACGATCTTCATTAATTTTGTGATTAAGCACTATAAATACATTC-TTTC-
322 AAAAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCA
* * * * *
4173 CTTATGATAAATGATATTCATGACTTTCTTTTGCATGG-AATCATTTCTTTACCCTA-TTTCCAT
387 GTT-GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTT
*
4236 AAAATAAAAATTCAT-CCTGAGTTAT
451 AAAATAAAAATTCATCCCTGAATTAT
*
4261 GACAATTATCGATTCTCGTAACTGTCTCCACTCTTTTCAAGATTT-GAACTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
* * *
4325 TTCATTAGGATAAATGATATTGATGCTTTGGTGTTGTAAGAAAAGGCTTC-CTCTCTACCGTTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGC-CTCTACCGTTTT
4389 TGTTAGAATCAAAGTTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCT
130 TGTTAGAATCAAAG-TTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCT
** * * * *
4454 TTTCAATATTAGGCACTATCAACATAGTCAAACTCATTAGGATAAAAGAAAAATTGAAGCTTTAG
194 TTTCAGGATTAGGCACTATCAACATAGTC-AACTCATTAGGATAGACG--AAATTGATGCTTTGG
* *
4519 ATTCGCAAGAATGGATTTCTTCACTCCAATTTTTGTAAAGTCTAAG-TTGTGCCTCAAATGAGAT
256 ATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGAC
* * * *
4583 TAAAAAGGATTCAAGTAATGATCTTCATT-A-TTTGTAATTA-GCACTATAAACACATTCTTTTC
321 AAAAAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTC
*
4645 AGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTT
386 AGTTGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTT
4710 AAAATAAAAATTCATCCCTG-ATTAT
451 AAAATAAAAATTCATCCCTGAATTAT
*
4735 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGA-TTGGCACTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
4799 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
4864 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATC-TT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
*
4928 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACG-AATTGATGCTTTTGATTCG
196 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
* * *
4992 CAAGGATGGATTT-TTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAG-CAAAAA
261 CAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAAA
*
5055 AGGA-TCTCGTAATGA--TTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTTG
326 AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTTG
* *
5117 GATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTTTTTACCCTATTTTCCTTAAAAT
391 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAAT
5182 AAAAATTCATCCCTGAATTAT
456 AAAAATTCATCCCTGAATTAT
* *
5203 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAATATTTGGCACTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
*
5268 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCACAAGAAAAGGTTTCGCCTCTACCGTTTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
5333 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
*
5398 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACAAAATTGATGCTTTGGATTCG
196 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
*
5463 CAAGAATGGATTTCATCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAA-GAGACAAAAA
261 CAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAAA
* * * *
5527 AGGGTTC---TAATAATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTTTTCAGTAG
326 AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTTG
*
5589 GATAAATGATATTGATGA-TTTCTTTTGCATGGAAATCA-TTCTTTACTCTATTTTCCTTAAAA-
391 GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAAT
5651 AAAAATTCATCCCTGAATTAT
456 AAAAATTCATCCCTGAATTAT
* *
5672 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGCACTAAGAACACAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
5737 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAG-AAAGGTTTCGCCTCTA-CGTTTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
5800 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
* *
5865 TGAGGATTAGGCACTATCAACAAAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
196 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
* * * * * *
5930 CAAGAATGGATTTTTTCACTCCAATTTCTATAAAGTCTGAGTTCGTGCTTCAAATGAGACAAATA
261 CAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAAA
* * * * *
5995 AGGATTCTAGTAACGATCTTCATTAATTTCGTCATTA-GCCACTATAAA-ATACATTC-TTTC-C
326 AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACG-CACTATAAACA-A-ATTCTTTTCAG
* * * *
6056 TTATGATACATGATATTCATGACTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTA
388 TT-GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTA
6121 AAATAAAAATTCATCCCTGAATTAT
452 AAATAAAAATTCATCCCTGAATTAT
*
6146 GAC-ATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTAG-ACTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
6209 TTCATTAGGA
66 TTCATTAGGA
Statistics
Matches: 5421, Mismatches: 244, Indels: 167
0.93 0.04 0.03
Matches are distributed among these distances:
462 49 0.01
463 141 0.03
464 93 0.02
465 46 0.01
466 112 0.02
467 329 0.06
468 139 0.03
469 272 0.05
470 76 0.01
471 240 0.04
472 506 0.09
473 401 0.07
474 672 0.12
475 1034 0.19
476 676 0.12
477 456 0.08
478 179 0.03
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.36
Consensus pattern (476 bp):
GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
CAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAAAA
AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTTG
GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAAT
AAAAATTCATCCCTGAATTAT
Found at i:2762 original size:158 final size:159
Alignment explanation
Indices: 241--5605 Score: 614
Period size: 159 Copynumber: 34.0 Consensus size: 159
231 GATAACGAAA
* *
241 ATTGATGCTTTGGATTCGCAAG-AATGGATTTCTTCACTCCAATTT-TGTAAAGTCTAAGTTTGT
1 ATTGATGCTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTAT
* *
304 GCCTCAAATGAGACAAAAAAGG-TTCTAGTAATAATCTTC-TTCATTT-GTGATTACGCACTATA
66 GCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTCCTTTCTTTTCGTGATTACGCACTATA
366 AACACATTCTTTTCAGTAGGATAAATGAT
131 AACACATTCTTTTCAGTAGGATAAATGAT
* *** * * * * * * * *
395 ATTGATGATTTTCTTTTGCATGGAAA--CA-TTCTTTAC-CCTATTTTTCCT-TAAAATAAAAAT
1 ATTGATGCTTTGGATTCGCA-AGAAATGGATTTCTTCACTCC-A-ATTT-CTGTAAAGTCAAAGT
* * ** * * * * ** * *
455 TCAT-CCT-GAAT-ATGAC---AATCGATTCTCGGAACT-GTCTCCATTCTTTTCAAGATT-GGA
62 TTATGCCTCAAATGA-GACAAAAAAGGATTCTAGTAA-TAATCTCCTTTCTTTTCGTGATTACGC
* * * ** *
512 ACTACGAAACCCAATCCCTTC-TTAGGATAAATGAT
125 ACTA-TAAACACATTCTTTTCAGTAGGATAAATGAT
* ** * * ** *
547 A-TGATGCTTTGG-TGTCGCAAGAAAAGG-TTTCGCCTCTACTGTTTTTGTTAGAA-TCAAAG--
1 ATTGATGCTTTGGAT-TCGCAAGAAATGGATTTCTTCACTCCAATTTCTG-TA-AAGTCAAAGTT
* * * * * *
606 T-TGCCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATC-CCTAATCTTTTCAG-GATTA
63 TATGCCTC--AAATGAGACAAAAAAGGAT--TCTAGTAATAATCTCCT-TTCTTTTC-GTGATTA
* * * * *** * * * *
666 GGCACTATCAACATAGTCAACTCATTAGGATAGACGAA
122 CGCACTATAAACACATTCTTTTCAGTAGGATAAATGAT
* * *
704 ATTGATGCTTTGGATTCGCAAG-GATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTAT
1 ATTGATGCTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTAT
* * *
768 GCCTCAAATGAGACAAAAAAGGATTCTAGTAATGATCTTC-ATCATTTT-GTGATTACGCACTAT
66 GCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTCCTTTC-TTTTCGTGATTACGCACTAT
* *
831 AAACAAATTCTTTTCAGTTGGATAAATGAT
130 AAACACATTCTTTTCAGTAGGATAAATGAT
* * * * * * * * * * * *
861 ATTGATGATTTTGTTTTGCATGGAAAT-CATTTCTTTAC-CCTATTTCCT-TAAAATAAAAATTC
1 ATTGATGCTTTGGATTCGCA-AGAAATGGATTTCTTCACTCCAATTT-CTGTAAAGTCAAAGTTT
* * * ** ** * * * * ** * *
923 ATCCCT-GAATTATGACAATTATCGATTTTCGTAACT-GTCT-GTATTCTTTTCAAGATT-TGGA
64 ATGCCTCAAATGA-GACAAAAAAGGATTCTAGTAA-TAATCTCCT-TTCTTTTCGTGATTACGCA
* * ** *
984 TCTA-AGAACCCAATCCCTTCATTAGGATAAATGAT
126 -CTATA-AACACATTCTTTTCAGTAGGATAAATGAT
** * * *
1019 ATTGATGCTTTGG-TGTCGCAAGTAAA-GG-TTTCGCCTCTACC-GTTTTTGTTAGAA-TCAAAG
1 ATTGATGCTTTGGAT-TCGCAAG-AAATGGATTTCTTCACT-CCAATTTCTG-TA-AAGTCAAAG
* * * * * *
1079 -TT-TGACTCTTAAATAAGAC-AAACATGATAGTC-A-TACTAATC-CCTAATCTTTTCAG-GAT
61 TTTATG-C-CTCAAATGAGACAAAAAAGGAT--TCTAGTAATAATCTCCT-TTCTTTTC-GTGAT
* * * * *** * * * *
1137 TAGGCAACTATCAACATAGTCAACTCATTAGGATAGACGAA
120 TACGC-ACTATAAACACATTCTTTTCAGTAGGATAAATGAT
* * * *
1178 ATTGATGCTTCGGATTCGCAAG-GATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTAT
1 ATTGATGCTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTAT
* * *
1242 GCCTCAAATGAGACAAAAAAGGATTCTAGTAATGATCTTCATTCATTTT-GTGATTACGCACTAT
66 GCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTCCTTTC-TTTTCGTGATTACGCACTAT
* *
1306 AAACAAATTCTTTTCAGTTGGATAAATGAT
130 AAACACATTCTTTTCAGTAGGATAAATGAT
* * * * * * * * * *
1336 ATTGATGATTTTGTTTTGCATGGAAAT-CATTTCTTTAC-CCTATTTTCCT-TAAAAT-AAAATT
1 ATTGATGCTTTGGATTCGCA-AGAAATGGATTTCTTCACTCC-AATTT-CTGTAAAGTCAAAGTT
* * * * ** ** * * ** * *
1397 CATCCCT-GAATTATGACAATTATCGATTCTCGTAACT-GTCT-CTATTCTTTTCAAGATT-TGG
63 TATGCCTCAAATGA-GACAAAAAAGGATTCTAGTAA-TAATCTCCT-TTCTTTTCGTGATTACGC
* * ** *
1458 ATCTA-AGAACCCAATCCCTTCATTAGGATAAATGAT
125 A-CTATA-AACACATTCTTTTCAGTAGGATAAATGAT
* ** * *
1494 ATTGATGCTTTGG-TGTCGCAAGAAAAGG-TTTCGCCTCTACC-GTTT-TGTTAGAA-TCAAAG-
1 ATTGATGCTTTGGAT-TCGCAAGAAATGGATTTCTTCACT-CCAATTTCTG-TA-AAGTCAAAGT
* * * * * *
1553 TT-TGCCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATC-CCTAATCTTTTCAG-GATT
62 TTATGCCTC--AAATGAGACAAAAAAGGAT--TCTAGTAATAATCTCCT-TTCTTTTC-GTGATT
* * * * *** * * * *
1613 AGGCACTATCAACATAGTCAACTCATTAGGATAGACGAA
121 ACGCACTATAAACACATTCTTTTCAGTAGGATAAATGAT
* * * * *
1652 ATTGATGCTTTGGATTCGCAAG-AATGGATTTTTTTTCACTCCAATTTGTATAAAGTCTAAGTTC
1 ATTGATGCTTTGGATTCGCAAGAAATGGA--TTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTT
* * * * ** *
1716 GTGCTTCAAATGAGACAAACAAGGATTCTAGTAA-AATCTTCATTAATTTT-GTGATTAGGCACT
64 ATGCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATC-TCCTTTCTTTTCGTGATTACGCACT
* * ** *
1779 ATAAATACCTTCTTTTCCTTATGATAAATGAT
128 ATAAACACATTCTTTTCAGTAGGATAAATGAT
* * * * * * * * * * *
1811 ATTCATGACTTT--CTTTGCATGGAAAT-CATTTCTTTAC-CCTATTT-TACATAAAATAAAAAT
1 ATTGATG-CTTTGGATTCGCA-AGAAATGGATTTCTTCACTCCAATTTCT--GTAAAGTCAAAGT
* * * * ** ** * * * ** ** *
1871 TCATCCCT-AAGTTATGACAATTATCGATTCTCGTAACT-GTCTCCATTCTTTTCAAGATTTGGA
62 TTATGCCTCAAATGA-GACAAAAAAGGATTCTAGTAA-TAATCTCCTTTCTTTTCGTGATTACGC
* * * ** **
1934 AC--TGAACCCAATCCCTTCTTTAGGATAAATGAT
125 ACTATAAACACATTCTTTTCAGTAGGATAAATGAT
* * * * * * *
1967 AGTGATGCTTTGG-GTCGCAAGAAAAGG-TTTC-GC-CTCTACTGTTTTGTTAGAA-TCAAAG-T
1 ATTGATGCTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAAT-TTCTG-TA-AAGTCAAAGTT
* * * * * *
2026 T-TGCCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATC-CCTAATCTTTTCAG-GATTA
63 TATGCCTC--AAATGAGACAAAAAAGGAT--TCTAGTAATAATCTCCT-TTCTTTTC-GTGATTA
* * * * *** * * * *
2086 GGCCACTAT-CACATAGTCAACTCATTAGGATAGACGAA
122 CG-CACTATAAACACATTCTTTTCAGTAGGATAAATGAT
* * *
2124 ATTGATGCTTTGGATTCGCAAG-GATGGATTTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTA
1 ATTGATGCTTTGGATTCGCAAGAAATGGA-TTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTA
* *
2188 TGCCTCGAATGAGACAAAAAAGGATTCTAGTAATGATCTTCC-TTCATTTT-GTGATTACGCACT
65 TGCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATC-TCCTTTC-TTTTCGTGATTACGCACT
* *
2251 ATAAACAAATTCTTTTCAGTTGGATAAATGAT
128 ATAAACACATTCTTTTCAGTAGGATAAATGAT
* * * * * * * * * * *
2283 ATTGATGATTTTGTTTTGCATGGAAAT-CATTTCTTTAC-CCTATTTTCCT-TAAAATAAAAATT
1 ATTGATGCTTTGGATTCGCA-AGAAATGGATTTCTTCACTCC-AATTT-CTGTAAAGTCAAAGTT
* * * * ** ** * * * ** * *
2345 CATCCCT-GAATTATGACAATTATCGATTCTCGTAACT-GTCTCCATTCTTTTCAAGATT-GGAA
63 TATGCCTCAAATGA-GACAAAAAAGGATTCTAGTAA-TAATCTCCTTTCTTTTCGTGATTACGCA
* * ** **
2407 CTA-AGAACCCAATCCCTTCTTTAGGATAAATGAT
126 CTATA-AACACATTCTTTTCAGTAGGATAAATGAT
** * *
2441 ATTGATGCTTTGG-TGTCGCAAGTAAA-GG-TTTCGGCTCTACC-GTTTCTGTTAGAA-TCAAAG
1 ATTGATGCTTTGGAT-TCGCAAG-AAATGGATTTCTTCACT-CCAATTTCTG-TA-AAGTCAAAG
* * * * * * * *
2501 TTT-GGCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATC-CCTAATCTTTTCAG-GATT
61 TTTATGC-CTCAAATGAGACAAAAAAGGAT--TCTAGTAATAATCTCCT-TTCTTTTC-GTGATT
* * * * *** * * * *
2561 AGGCACTATCAACATAGTCAACTCATTAGGATAGACGAA
121 ACGCACTATAAACACATTCTTTTCAGTAGGATAAATGAT
* *
2600 ATTGATGCTTTGGATTCGCAAG-AATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTTGT
1 ATTGATGCTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTAT
* *
2664 GCCTCAAATGAGACAAAAAAGGGTTCTAGTAATAATCTTCTTTCATTTT-GTGATTACGCACTAT
66 GCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTCCTTTC-TTTTCGTGATTACGCACTAT
2728 AAACACATTCTTTTCAGTAGGATAAATGAT
130 AAACACATTCTTTTCAGTAGGATAAATGAT
* *** * * * * * * * * *
2758 ATTGATGATTTTCTTTTGCATGGAAAT-CAATTCTTTAC-CCTATTTTCCT-TAAAATAAAAATT
1 ATTGATGCTTTGGATTCGCA-AGAAATGGATTTCTTCACTCC-AATTT-CTGTAAAGTCAAAGTT
* * * * ** ** * * * ** ** *
2820 CATCCCT-GAATTATGACAATTATCGATTCTCGTAACT-GTCTCCATTCTTTTCAAGATTTGGAA
63 TATGCCTCAAATGA-GACAAAAAAGGATTCTAGTAA-TAATCTCCTTTCTTTTCGTGATTACGCA
* * ** **
2883 CTA-AGAACCCAATCCCTTCTTTAGGATAAATGAT
126 CTATA-AACACATTCTTTTCAGTAGGATAAATGAT
* ** * * ** *
2917 ATTGATGCTTTTGG-TGTCGCAAGAAAAGG-TTTCGCCTCTACTGTTTTTGTTAGAA-TCAAAG-
1 ATTGATGC-TTTGGAT-TCGCAAGAAATGGATTTCTTCACTCCAATTTCTG-TA-AAGTCAAAGT
* * * * * ** * * * *
2978 TT-GGCCTCTTAAATAAGACAAACATGAATAGTCGTACTAATC-CCTAATCTTTTCAG-GATTAG
62 TTATGCCTC--AAATGAGACAAAAAAGGATTCTAGTAATAATCTCCT-TTCTTTTC-GTGATTAC
* * * *** * * * *
3040 GCACTATCAACATAGTCAACTCATTAGGATAGACGAA
123 GCACTATAAACACATTCTTTTCAGTAGGATAAATGAT
* * *
3077 ATTGATGCTTTGGATTCGCAAG-GATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTAT
1 ATTGATGCTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTAT
* * *
3141 GCCTCAAATGAGACAAAAAAAGGATTCTAGTAATGATCTTCATTCATTTT-GTGATTACGCACTA
66 GCCTCAAATGAGAC-AAAAAAGGATTCTAGTAATAATCTCCTTTC-TTTTCGTGATTACGCACTA
* *
3205 TAAACAAATTCTTTT-AGTTGGATAAATGAT
129 TAAACACATTCTTTTCAGTAGGATAAATGAT
* * * * * * * * * * *
3235 ATTGATGATTTTGTTTTGCATGGAAAT-CATTTCTTTAC-CCTATTTTCCT-TAAAATAAAAATT
1 ATTGATGCTTTGGATTCGCA-AGAAATGGATTTCTTCACTCC-AATTT-CTGTAAAGTCAAAGTT
* * * * ** ** * * * ** * *
3297 CATCCCT-GAATTATGACAATTATCGATTTTCGTAACT-GTCT-CTATTCTTTTCAAGATT-TGG
63 TATGCCTCAAATGA-GACAAAAAAGGATTCTAGTAA-TAATCTCCT-TTCTTTTCGTGATTACGC
* * ** *
3358 ATCTA-AGAACCCAATCCCTTCATTAGGATAAATGAT
125 A-CTATA-AACACATTCTTTTCAGTAGGATAAATGAT
** * * *
3394 ATTGATGCTTTGG-TGTCGCAAGTAAA-GG-TTTCGCCTCTACC-GTTTTTGTTAGAA-TCAAAG
1 ATTGATGCTTTGGAT-TCGCAAG-AAATGGATTTCTTCACT-CCAATTTCTG-TA-AAGTCAAAG
* * * * * * *
3454 -TT-TGACTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATC-CCTAATCTTTTCAG-GAT
61 TTTATG-C-CTCAAATGAGACAAAAAAGGAT--TCTAGTAATAATCTCCT-TTCTTTTC-GTGAT
* * * * *** * * * *
3513 TAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAA
120 TACGCACTATAAACACATTCTTTTCAGTAGGATAAATGAT
* * *
3553 ATTGATGCTTTGGATTCGCAAG-GATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTAT
1 ATTGATGCTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTAT
* * *
3617 GCCTCAAATGAGACAAAAAAGGATTCTAGTAATGATCTTCATTCATTTT-GTGATTACGCACTAT
66 GCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTCCTTTC-TTTTCGTGATTACGCACTAT
* *
3681 AAACAAATTCTTTTCAGTTGGATAAATGAT
130 AAACACATTCTTTTCAGTAGGATAAATGAT
* * * * * * * * * * *
3711 ATTGATGATTTTGTTTTGCATGGAAAT-CATTTCTTTAC-CCTATTTTCCT-TAAAATAAAAATT
1 ATTGATGCTTTGGATTCGCA-AGAAATGGATTTCTTCACTCC-AATTT-CTGTAAAGTCAAAGTT
* * * * ** ** * * ** * *
3773 CATCCCT-GAATTATGACAATTATCGATTCTCGTAACT-GTCT-CTATTCTTTTCAAGATT-TGG
63 TATGCCTCAAATGA-GACAAAAAAGGATTCTAGTAA-TAATCTCCT-TTCTTTTCGTGATTACGC
* * ** *
3834 ATCTA-AGAACCCAAATCCCTTCATTAGGATAAATGA-
125 A-CTATA-AACAC-ATTCTTTTCAGTAGGATAAATGAT
* ** * * *
3870 ATTGATGC-TTGG-TGTCGCAAGAAAAGG-TTTCGCCTCTACC-GTTTTTGTTAGAA-TCAAAG-
1 ATTGATGCTTTGGAT-TCGCAAGAAATGGATTTCTTCACT-CCAATTTCTG-TA-AAGTCAAAGT
* * * * * *
3929 TT-TGCCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATC-CCTAATCTTTTCAG-GATT
62 TTATGCCTC--AAATGAGACAAAAAAGGAT--TCTAGTAATAATCTCCT-TTCTTTTC-GTGATT
* * * * *** * * * *
3989 AGGCACTATCAACATAGTCAACTCATTAGGATAGACGAA
121 ACGCACTATAAACACATTCTTTTCAGTAGGATAAATGAT
* * * * *
4028 ATTGATGCTTTGGATTCGCAAGAAAATGGATTTTTTTCACTCCAATTTGTATAAAGTCTAAGTTC
1 ATTGATGCTTTGGATTCGCAAG-AAATGGA-TTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTT
* * * ** * ** *
4093 GTGCTTCAAATGAGACAAACAAGGATTCTAGTAACGATCTTCATTAATTTT-GTGATTAAGCACT
64 ATGCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATC-TCCTTTCTTTTCGTGATTACGCACT
* ** *
4157 ATAAATACATTC-TTTCCTTATGATAAATGAT
128 ATAAACACATTCTTTTCAGTAGGATAAATGAT
* ** * * * * * * ** * * * *
4188 ATTCATGACTTT-CTTTTGCATGGAAT-CATTTCTTTAC-CCTATTTCCATAAAATAAAAATTCA
1 ATTGATG-CTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTA
* * * ** ** * * ** ** * *
4250 T-CCT-GAGTTATGACAATTATCGATTCTCGTAACT-GTCTCCACTCTTTTCAAGATT-TGAACT
65 TGCCTCAAATGA-GACAAAAAAGGATTCTAGTAA-TAATCTCCTTTCTTTTCGTGATTACGCACT
* * ** *
4311 A-AGAACCCAATCCCTTCATTAGGATAAATGAT
128 ATA-AACACATTCTTTTCAGTAGGATAAATGAT
* * * * * * * *
4343 ATTGATGCTTTGG-TGTTGTAAGAAAAGG-CTTCCTCTCTACC-GTTTTTGTTAGAA-TCAAAGT
1 ATTGATGCTTTGGAT-TCGCAAGAAATGGATTTCTTCACT-CCAATTTCTG-TA-AAGTCAAAGT
* * * * * * *
4404 TT-TGCCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATC-CCTAATCTTTTCAAT-ATT
62 TTATGCCTC--AAATGAGACAAAAAAGGAT--TCTAGTAATAATCTCCT-TTCTTTTC-GTGATT
* * * * *** * * *
4464 AGGCACTATCAACATAGTCAAACTCATTAGGATAAAAGAAAA
121 ACGCACTATAAACACATTC-TTTTCAGTAGGATAAATG--AT
* * * * *
4506 ATTGAAGCTTTAGATTCGCAAG-AATGGATTTCTTCACTCCAATTTTTGTAAAGTCTAAG-TTGT
1 ATTGATGCTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTAT
** * * * * * *
4569 GCCTCAAATGAGATTAAAAAGGATTCAAGTAATGATCTTCATT-ATTT-GTAATTA-GCACTATA
66 GCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTCCTTTCTTTTCGTGATTACGCACTATA
4631 AACACATTCTTTTCAGTAGGATAAATGAT
131 AACACATTCTTTTCAGTAGGATAAATGAT
* *** * * * * * * * *
4660 ATTGATGATTTTCTTTTGCATGGAAAT-CATTTCTTTAC-CCTATTTTCCT-TAAAATAAAAATT
1 ATTGATGCTTTGGATTCGCA-AGAAATGGATTTCTTCACTCC-AATTT-CTGTAAAGTCAAAGTT
* ** * ** ** * * * ** *
4722 CAT-CC-CTGATTATGACAATTATCGATTCTCGTAACT-GTCTCCATTCTTTTCAAGATT-GGCA
63 TATGCCTCAAATGA-GACAAAAAAGGATTCTAGTAA-TAATCTCCTTTCTTTTCGTGATTACGCA
* * ** *
4783 CTA-AGAACCCAATCCCTTCATTAGGATAAATGAT
126 CTATA-AACACATTCTTTTCAGTAGGATAAATGAT
* ** * * *
4817 ATTGATGCTTTGG-TGTCGCAAGAAAAGG-TTTCGCCTCTACC-GTTTTTGTTAGAA-TCAAAG-
1 ATTGATGCTTTGGAT-TCGCAAGAAATGGATTTCTTCACT-CCAATTTCTG-TA-AAGTCAAAGT
* * * * * *
4877 TT-TGCCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATC-CCTAATC-TTTCAG-GATT
62 TTATGCCTC--AAATGAGACAAAAAAGGAT--TCTAGTAATAATCTCCT-TTCTTTTC-GTGATT
* * * * *** * * *
4936 AGGCACTATCAACATAGTCAACTCATTAGGATAGACGA-
121 ACGCACTATAAACACATTCTTTTCAGTAGGATAAATGAT
* * * *
4974 ATTGATGCTTTTGATTCGCAAG-GATGGATTT-TTCACTCCAATTTCTGTGAAGTCTAAGTTTAT
1 ATTGATGCTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTAT
* * *
5037 GCCTCAAATGAG-CAAAAAAGGA-TCTCGTAATGAT-T-CATTCATTTT-GTGATTACGCACTAT
66 GCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTCCTTTC-TTTTCGTGATTACGCACTAT
* *
5097 AAACAAATTCTTTTCAGTTGGATAAATGAT
130 AAACACATTCTTTTCAGTAGGATAAATGAT
* * * * * * * * * * * *
5127 ATTGATGATTTTGTTTTGCATGGAAAT-CATTTTTTTAC-CCTATTTTCCT-TAAAATAAAAATT
1 ATTGATGCTTTGGATTCGCA-AGAAATGGATTTCTTCACTCC-AATTT-CTGTAAAGTCAAAGTT
* * * * ** ** * * * * **
5189 CATCCCT-GAATTATGACAATTATCGATTCTCGTAACT-GTCTCCATTCTTTTCAAT-ATTTGGC
63 TATGCCTCAAATGA-GACAAAAAAGGATTCTAGTAA-TAATCTCCTTTCTTTTC-GTGATTACGC
* * ** *
5251 ACTA-AGAACCCAATCCCTTCATTAGGATAAATGAT
125 ACTATA-AACACATTCTTTTCAGTAGGATAAATGAT
* * ** * * *
5286 ATTGATGCTTTGG-TGTCACAAGAAAAGG-TTTCGCCTCTACC-GTTTTTGTTAGAA-TCAAAG-
1 ATTGATGCTTTGGAT-TCGCAAGAAATGGATTTCTTCACT-CCAATTTCTG-TA-AAGTCAAAGT
* * * * * *
5346 TT-TGCCTCTTAAATAAGACAAACATGAATAGTC-A-TACTAATC-CCTAATCTTTTCAG-GATT
62 TTATGCCTC--AAATGAGACAAAAAAGGAT--TCTAGTAATAATCTCCT-TTCTTTTC-GTGATT
* * * * *** * * ** *
5406 AGGCACTATCAACATAGTCAACTCATTAGGATAGACAAA
121 ACGCACTATAAACACATTCTTTTCAGTAGGATAAATGAT
* * *
5445 ATTGATGCTTTGGATTCGCAAG-AATGGATTTCATCACTCCAATTTCTGTAAAGTCTAAGTTTGT
1 ATTGATGCTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTAT
* * *
5509 GCCTCAAA-GAGACAAAAAAGGGTTC---TAATAATCTTCATTCATTTT-GTGATTACGCACTAT
66 GCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTCCTTTC-TTTTCGTGATTACGCACTAT
5569 AAACACATTCTTTTCAGTAGGATAAATGAT
130 AAACACATTCTTTTCAGTAGGATAAATGAT
5599 ATTGATG
1 ATTGATG
5606 ATTTCTTTTG
Statistics
Matches: 3578, Mismatches: 1190, Indels: 886
0.63 0.21 0.16
Matches are distributed among these distances:
149 1 0.00
150 12 0.00
151 31 0.01
152 71 0.02
153 70 0.02
154 142 0.04
155 210 0.06
156 186 0.05
157 476 0.13
158 932 0.26
159 957 0.27
160 312 0.09
161 101 0.03
162 39 0.01
163 37 0.01
164 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.36
Consensus pattern (159 bp):
ATTGATGCTTTGGATTCGCAAGAAATGGATTTCTTCACTCCAATTTCTGTAAAGTCAAAGTTTAT
GCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTCCTTTCTTTTCGTGATTACGCACTATA
AACACATTCTTTTCAGTAGGATAAATGAT
Found at i:3408 original size:953 final size:952
Alignment explanation
Indices: 1--6218 Score: 10355
Period size: 953 Copynumber: 6.6 Consensus size: 952
1 GACAATTATCGATTCTCGTAACTGTCTCC-TTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
* * *
65 TTCTTTAGGATAAATGATATTGATGCTTTGGTGTCGCAAAGTAAAGGTTTCGGCTCTACCGTTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGC-AAGAAAAGGTTTCGCCTCTACCGTTTT
*
130 TGTTAGAATCAAA-TTTGGCTCTTAAAT-AGACAAACATGAATAGTCATACTAATCCCTAATCTT
130 TGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTT
193 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATA-ACGAAAATTGATGCTTTGGATT
195 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACG-AAATTGATGCTTTGGATT
* * *
257 CGCAAGAATGGATTTCTTCACTCCAATTT-TGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAA
259 CGCAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAA
* *
321 AAAGG-TTCTAGTAATAATCTTC-TTCA-TTTGTGATTACGCACTATAAACACATTCTTTTCAGT
324 AAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGT
* *
383 AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAA-CA-TTCTTTACCCTATTTTTCCTTAA
389 TGGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTA-TTTTCCTTAA
*
446 AATAAAAATTCAT-CCTGAA-TATGAC-A--ATCGATTCTCGGAACTGTCTCCATTCTTTTCAAG
453 AATAAAAATTCATCCCTGAATTATGACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAG
*
506 A-TTGGAACTACGAAACCCAATCCCTTC-TTAGGATAAATGATA-TGATGCTTTGGTGTCGCAAG
518 ATTTGGAACTAAG-AACCCAATCCCTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAG
*
568 AAAAGGTTTCGCCTCTACTGTTTTTGTTAGAATCAAAG-TTGCCTCTTAAATAAGACAAACATGA
582 AAAAGGTTTCGCCTCTACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGA
632 ATAGTCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGAT
647 ATAGTCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGAT
* *
697 AGACGAAATTGATGCTTTGGATTCGCAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAA
712 AGACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAA
* *
762 GTTTATGCCTCAAATGAGACAAAAAAGGATTCTAGTAATGATCTTCA-TCATTTTGTGATTACGC
777 GTTTGTGCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTTCATTCATTTTGTGATTACGC
* * *
826 ACTATAAACAAATTCTTTTCAGTTGGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCAT
842 ACTATAAACACATTCTTTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCAT
891 TTCTTTACCCTA-TTTCCTTAAAATAAAAATTCATCCCTGAATTAT
907 TTCTTTACCCTATTTTCCTTAAAATAAAAATTCATCCCTGAATTAT
* ** *
936 GACAATTATCGATTTTCGTAACTGTCTGTATTCTTTTCAAGATTTGGATCTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
*
1001 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGTAAAGGTTTCGCCTCTACCGTTTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
*
1066 GTTAGAATCAAAGTTTGACTCTTAAATAAGACAAACATG-ATAGTCATACTAATCCCTAATCTTT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
*
1130 TCAGGATTAGGCAACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTCGGATTC
196 TCAGGATTAGGC-ACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
1195 GCAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAAA
260 GCAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAAA
1260 AAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTT
325 AAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTT
1325 GGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAA
390 GGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAA
*
1390 T-AAAATTCATCCCTGAATTATGACAATTATCGATTCTCGTAACTGTCTCTATTCTTTTCAAGAT
455 TAAAAATTCATCCCTGAATTATGACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGAT
*
1454 TTGGATCTAAGAACCCAATCCCTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAA
520 TTGGAACTAAGAACCCAATCCCTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAA
1519 AGGTTTCGCCTCTACCG-TTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATA
585 AGGTTTCGCCTCTACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATA
1583 GTCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGA
650 GTCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGA
* * *
1648 CGAAATTGATGCTTTGGATTCGCAAGAATGGATTTTTTTTCACTCCAATTTGTATAAAGTCTAAG
715 CGAAATTGATGCTTTGGATTCGCAAGAATGGA--TTTCTTCACTCCAATTTCTGTAAAGTCTAAG
* * * * *
1713 TTCGTGCTTCAAATGAGACAAACAAGGATTCTAGTAA-AATCTTCATTAATTTTGTGATTAGGCA
778 TTTGTGCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTTCATTCATTTTGTGATTACGCA
* * ** * * *
1777 CTATAAATACCTTCTTTTCCTTATGATAAATGATATTCATGACTTTC-TTTGCATGGAAATCATT
843 CTATAAACACATTCTTTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATT
* *
1841 TCTTTACCCTATTTTACATAAAATAAAAATTCATCCCT-AAGTTAT
908 TCTTTACCCTATTTTCCTTAAAATAAAAATTCATCCCTGAA-TTAT
1886 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACT--GAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
* * *
1949 TTCTTTAGGATAAATGATAGTGATGCTTTGG-GTCGCAAGAAAAGGTTTCGCCTCTACTG-TTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
2012 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
2077 TCAGGATTAGGCCACTATC-ACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
196 TCAGGATTAGG-CACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
*
2141 GCAAGGATGGATTTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCGAATGAGACAAA
260 GCAAGGATGGA-TTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAA
*
2206 AAAGGATTCTAGTAATGATCTTCCTTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGT
324 AAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGT
2271 TGGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAA
389 TGGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAA
2336 ATAAAAATTCATCCCTGAATTATGACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGA
454 ATAAAAATTCATCCCTGAATTATGACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGA
* *
2401 -TTGGAACTAAGAACCCAATCCCTTCTTTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGTA
519 TTTGGAACTAAGAACCCAATCCCTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAA
* * *
2465 AAGGTTTCGGCTCTACCGTTTCTGTTAGAATCAAAGTTTGGCTCTTAAATAAGACAAACATGAAT
584 AAGGTTTCGCCTCTACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAT
2530 AGTCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAG
649 AGTCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAG
2595 ACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGT
714 ACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGT
* *
2660 TTGTGCCTCAAATGAGACAAAAAAGGGTTCTAGTAATAATCTTCTTTCATTTTGTGATTACGCAC
779 TTGTGCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTTCATTCATTTTGTGATTACGCAC
*
2725 TATAAACACATTCTTTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCAATT
844 TATAAACACATTCTTTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTT
2790 CTTTACCCTATTTTCCTTAAAATAAAAATTCATCCCTGAATTAT
909 CTTTACCCTATTTTCCTTAAAATAAAAATTCATCCCTGAATTAT
2834 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
* *
2899 TTCTTTAGGATAAATGATATTGATGCTTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACTGTTTT
66 TTCATTAGGATAAATGATATTGATGC-TTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTT
* *
2964 TGTTAGAATCAAAGTTGGCCTCTTAAATAAGACAAACATGAATAGTCGTACTAATCCCTAATCTT
130 TGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTT
3029 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
195 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
3094 GCAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAAA
260 GCAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGAC-AAA
3159 AAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTT-AGT
324 AAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGT
3223 TGGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAA
389 TGGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAA
* *
3288 ATAAAAATTCATCCCTGAATTATGACAATTATCGATTTTCGTAACTGTCTCTATTCTTTTCAAGA
454 ATAAAAATTCATCCCTGAATTATGACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGA
* *
3353 TTTGGATCTAAGAACCCAATCCCTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGTA
519 TTTGGAACTAAGAACCCAATCCCTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAA
*
3418 AAGGTTTCGCCTCTACCGTTTTTGTTAGAATCAAAGTTTGACTCTTAAATAAGACAAACATGAAT
584 AAGGTTTCGCCTCTACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAAT
3483 AGTCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAG
649 AGTCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAG
* *
3548 ACGAAATTGATGCTTTGGATTCGCAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGT
714 ACGAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGT
* *
3613 TTATGCCTCAAATGAGACAAAAAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCAC
779 TTGTGCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTTCATTCATTTTGTGATTACGCAC
* * *
3678 TATAAACAAATTCTTTTCAGTTGGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTT
844 TATAAACACATTCTTTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTT
3743 CTTTACCCTATTTTCCTTAAAATAAAAATTCATCCCTGAATTAT
909 CTTTACCCTATTTTCCTTAAAATAAAAATTCATCCCTGAATTAT
* *
3787 GACAATTATCGATTCTCGTAACTGTCTCTATTCTTTTCAAGATTTGGATCTAAGAACCCAAATCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCC-AATCC
3852 CTTCATTAGGATAAATGA-ATTGATGC-TTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTT
65 CTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTT
3915 TGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTT
130 TGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTT
3980 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
195 TTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTC
* * * * * ** *
4045 GCAAGAAAATGGATTTTTTTCACTCCAATTTGTATAAAGTCTAAGTTCGTGCTTCAAATGAGACA
260 GCAAG--GATGGA-TTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACA
* * * * * *
4110 AACAAGGATTCTAGTAACGATCTTCATTAATTTTGTGATTAAGCACTATAAATACATTC-TTTC-
322 AAAAAGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCA
* * * * * *
4173 CTTATGATAAATGATATTCATGACTTTCTTTTGCATGG-AATCATTTCTTTACCCTA-TTTCCAT
387 GTT-GGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTT
* *
4236 AAAATAAAAATTCAT-CCTGAGTTATGACAATTATCGATTCTCGTAACTGTCTCCACTCTTTTCA
451 AAAATAAAAATTCATCCCTGAATTATGACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCA
* *
4300 AGATTT-GAACTAAGAACCCAATCCCTTCATTAGGATAAATGATATTGATGCTTTGGTGTTGTAA
516 AGATTTGGAACTAAGAACCCAATCCCTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAA
*
4364 GAAAAGGCTTC-CTCTCTACCGTTTTTGTTAGAATCAAAGTTTTGCCTCTTAAATAAGACAAACA
581 GAAAAGGTTTCGC-CTCTACCGTTTTTGTTAGAATCAAAG-TTTGCCTCTTAAATAAGACAAACA
**
4428 TGAATAGTCATACTAATCCCTAATCTTTTCAATATTAGGCACTATCAACATAGTCAAACTCATTA
644 TGAATAGTCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTC-AACTCATTA
* * * * *
4493 GGATAAAAGAAAAATTGAAGCTTTAGATTCGCAAGAATGGATTTCTTCACTCCAATTTTTGTAAA
708 GGATAGACG--AAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAA
** * * *
4558 GTCTAAG-TTGTGCCTCAAATGAGATTAAAAAGGATTCAAGTAATGATCTTCATT-A-TTTGTAA
771 GTCTAAGTTTGTGCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTTCATTCATTTTGTGA
4620 TTA-GCACTATAAACACATTCTTTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
836 TTACGCACTATAAACACATTCTTTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGA
4684 AATCATTTCTTTACCCTATTTTCCTTAAAATAAAAATTCATCCCTG-ATTAT
901 AATCATTTCTTTACCCTATTTTCCTTAAAATAAAAATTCATCCCTGAATTAT
*
4735 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGA-TTGGCACTAAGAACCCAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
4799 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
4864 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATC-TT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
*
4928 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACG-AATTGATGCTTTTGATTCG
196 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
4992 CAAGGATGGATTT-TTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAG-CAAAAA
261 CAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAAAA
*
5055 AGGA-TCTCGTAATGA--TTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTTG
326 AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTTG
*
5117 GATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTTTTTACCCTATTTTCCTTAAAAT
391 GATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAAT
*
5182 AAAAATTCATCCCTGAATTATGACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAATATT
456 AAAAATTCATCCCTGAATTATGACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATT
* *
5247 TGGCACTAAGAACCCAATCCCTTCATTAGGATAAATGATATTGATGCTTTGGTGTCACAAGAAAA
521 TGGAACTAAGAACCCAATCCCTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAA
5312 GGTTTCGCCTCTACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAG
586 GGTTTCGCCTCTACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAG
5377 TCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGAC
651 TCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGAC
* *
5442 AAAATTGATGCTTTGGATTCGCAAGAATGGATTTCATCACTCCAATTTCTGTAAAGTCTAAGTTT
716 GAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTT
*
5507 GTGCCTCAAA-GAGACAAAAAAGGGTTC---TAATAATCTTCATTCATTTTGTGATTACGCACTA
781 GTGCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTTCATTCATTTTGTGATTACGCACTA
5568 TAAACACATTCTTTTCAGTAGGATAAATGATATTGATGA-TTTCTTTTGCATGGAAATCA-TTCT
846 TAAACACATTCTTTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCT
*
5631 TTACTCTATTTTCCTTAAAA-AAAAATTCATCCCTGAATTAT
911 TTACCCTATTTTCCTTAAAATAAAAATTCATCCCTGAATTAT
* *
5672 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGCACTAAGAACACAATCCC
1 GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
5737 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAG-AAAGGTTTCGCCTCTA-CGTTTTT
66 TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
5800 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
131 GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
* *
5865 TGAGGATTAGGCACTATCAACAAAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
196 TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
* * * * * ** * *
5930 CAAGAATGGATTTTTTCACTCCAATTTCTATAAAGTCTGAGTTCGTGCTTCAAATGAGACAAATA
261 CAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAAAA
* * * * *
5995 AGGATTCTAGTAACGATCTTCATTAATTTCGTCATTA-GCCACTATAAA-ATACATTC-TTTC-C
326 AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACG-CACTATAAACA-A-ATTCTTTTCAG
* * * * *
6056 TTATGATACATGATATTCATGACTTTCTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTA
388 TT-GGATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTA
6121 AAATAAAAATTCATCCCTGAATTATGAC-ATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAA
452 AAATAAAAATTCATCCCTGAATTATGACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAA
*
6185 GATTTAG-ACTAAGAACCCAATCCCTTCATTAGGA
517 GATTTGGAACTAAGAACCCAATCCCTTCATTAGGA
Statistics
Matches: 4973, Mismatches: 232, Indels: 150
0.93 0.04 0.03
Matches are distributed among these distances:
935 65 0.01
936 217 0.04
937 217 0.04
938 194 0.04
939 204 0.04
940 53 0.01
941 161 0.03
942 233 0.05
943 225 0.05
944 11 0.00
946 250 0.05
947 503 0.10
948 663 0.13
949 233 0.05
950 361 0.07
951 212 0.04
952 281 0.06
953 825 0.17
954 65 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.36
Consensus pattern (952 bp):
GACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATTTGGAACTAAGAACCCAATCCC
TTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAAGGTTTCGCCTCTACCGTTTTT
GTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCTAATCTTT
TCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGACGAAATTGATGCTTTGGATTCG
CAAGGATGGATTTCTTCACTCCAATTTCTGTGAAGTCTAAGTTTATGCCTCAAATGAGACAAAAA
AGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACAAATTCTTTTCAGTTG
GATAAATGATATTGATGATTTTGTTTTGCATGGAAATCATTTCTTTACCCTATTTTCCTTAAAAT
AAAAATTCATCCCTGAATTATGACAATTATCGATTCTCGTAACTGTCTCCATTCTTTTCAAGATT
TGGAACTAAGAACCCAATCCCTTCATTAGGATAAATGATATTGATGCTTTGGTGTCGCAAGAAAA
GGTTTCGCCTCTACCGTTTTTGTTAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAG
TCATACTAATCCCTAATCTTTTCAGGATTAGGCACTATCAACATAGTCAACTCATTAGGATAGAC
GAAATTGATGCTTTGGATTCGCAAGAATGGATTTCTTCACTCCAATTTCTGTAAAGTCTAAGTTT
GTGCCTCAAATGAGACAAAAAAGGATTCTAGTAATAATCTTCATTCATTTTGTGATTACGCACTA
TAAACACATTCTTTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCATTTCT
TTACCCTATTTTCCTTAAAATAAAAATTCATCCCTGAATTAT
Done.