Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold543
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 103261
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
Found at i:714 original size:21 final size:21
Alignment explanation
Indices: 675--714 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
665 AAGTGGAAGG
*
675 TTGTTGGTATGTTTACAATAA
1 TTGTTGGTATATTTACAATAA
696 TTGTTGG-ATATTTATCAAT
1 TTGTTGGTATATTTA-CAAT
715 TTTTCTATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.28, C:0.05, G:0.17, T:0.50
Consensus pattern (21 bp):
TTGTTGGTATATTTACAATAA
Found at i:7088 original size:21 final size:19
Alignment explanation
Indices: 7062--7113 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
7052 TTCAATAATT
7062 TGTATCGATACAAACAGTAAA
1 TGTATCGATACAAA-AGT-AA
* * *
7083 TGTATCGATATATAAGTAT
1 TGTATCGATACAAAAGTAA
7102 TGTATCGATACA
1 TGTATCGATACA
7114 GTGTATCGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 12 0.44
20 3 0.11
21 12 0.44
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAAAAGTAA
Found at i:7168 original size:20 final size:20
Alignment explanation
Indices: 7143--7198 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
7133 CTGCCAAGGA
7143 AATGTATCGATACATT-ATTC
1 AATGTATCGATACATTGA-TC
7163 AATGTATCGATACATTGATC
1 AATGTATCGATACATTGATC
**
7183 TTTGTATCGATACATT
1 AATGTATCGATACATT
7199 TAGGAAGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
20 32 0.97
21 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.41
Consensus pattern (20 bp):
AATGTATCGATACATTGATC
Found at i:18640 original size:1 final size:1
Alignment explanation
Indices: 18634--18755 Score: 91
Period size: 1 Copynumber: 122.0 Consensus size: 1
18624 AAATCTTCAC
* * ** * * * **
18634 TTTTTTTTTTTGTTTTTTTTTTTCTTTTTCCTTTTTTTTGTTTTGTTTTTTTTTTCTTTTTCCTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * ** * * *
18699 TTTTTTGTTTTGTTTTTTTTTTCTTTTTCCTTTTTTTTGTTTTGTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
18756 CCAATTGCCA
Statistics
Matches: 93, Mismatches: 28, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 93 1.00
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (1 bp):
T
Found at i:18683 original size:32 final size:32
Alignment explanation
Indices: 18634--18749 Score: 216
Period size: 32 Copynumber: 3.6 Consensus size: 32
18624 AAATCTTCAC
18634 TTTTTTT-TTTTGTTTTTTTTTTTCTTTTTCCT
1 TTTTTTTGTTTTG-TTTTTTTTTTCTTTTTCCT
18666 TTTTTTTGTTTTGTTTTTTTTTTCTTTTTCCT
1 TTTTTTTGTTTTGTTTTTTTTTTCTTTTTCCT
18698 TTTTTTTGTTTTGTTTTTTTTTTCTTTTTCCT
1 TTTTTTTGTTTTGTTTTTTTTTTCTTTTTCCT
18730 TTTTTTTGTTTTGTTTTTTT
1 TTTTTTTGTTTTGTTTTTTT
18750 CTTTTTCCAA
Statistics
Matches: 83, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
32 78 0.94
33 5 0.06
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (32 bp):
TTTTTTTGTTTTGTTTTTTTTTTCTTTTTCCT
Found at i:32394 original size:1 final size:1
Alignment explanation
Indices: 32388--32444 Score: 60
Period size: 1 Copynumber: 57.0 Consensus size: 1
32378 CTCCTCTTCT
* * * * * *
32388 AAAAAAAAAAACAAAAAAAAAAAAAAACACAAAAAAAAAACAAAACAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
32445 GAGAAAAGAA
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:32409 original size:16 final size:16
Alignment explanation
Indices: 32388--32444 Score: 87
Period size: 17 Copynumber: 3.4 Consensus size: 16
32378 CTCCTCTTCT
32388 AAAAAAAAAAACAAAA
1 AAAAAAAAAAACAAAA
32404 AAAAAAAAAAACACAAA
1 AAAAAAAAAAACA-AAA
*
32421 AAAAAAACAAAACAAAG
1 AAAAAAA-AAAACAAAA
32438 AAAAAAA
1 AAAAAAA
32445 GAGAAAAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
16 13 0.34
17 19 0.50
18 6 0.16
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAACAAAA
Found at i:32411 original size:18 final size:18
Alignment explanation
Indices: 32388--32444 Score: 78
Period size: 18 Copynumber: 3.1 Consensus size: 18
32378 CTCCTCTTCT
32388 AAAAAAAAAAACAAAAAA
1 AAAAAAAAAAACAAAAAA
*
32406 AAAAAAAAACACAAAAAA
1 AAAAAAAAAAACAAAAAA
*
32424 AAAACAAAACAAAGAAAAAA
1 AAAA-AAAA-AAACAAAAAA
32444 A
1 A
32445 GAGAAAAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
18 21 0.62
19 4 0.12
20 9 0.26
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAACAAAAAA
Found at i:33606 original size:55 final size:55
Alignment explanation
Indices: 33518--33984 Score: 634
Period size: 55 Copynumber: 8.4 Consensus size: 55
33508 TTCGCCCTTG
* *
33518 AGTCCTCAAAGAGCATGACGCCTCTTAAAGCCCACATAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
33573 AGTCCTCAAAAAGCAGGACGCCTCTTAAGGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
*
33628 AGTCCTCAAAGAGCAGGACGCCT-TTCAAACCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTCTT-AAAGCCCACACAAGTTGGTGGCATTTTCC
* * * *
33683 AGTCCTCAAAGAGTAGGACACCT-TTCAAAGCCCACATAAGTTGGTGCCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTCTT-AAAGCCCACACAAGTTGGTGGCATTTTCC
*
33738 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGACATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
33793 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTAGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
* * * * *
33848 AGTCCTCAAAAAGCAGGACACCTTTTAAAGCCCGCACAAGTTGATGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
* * * *
33903 AGTCTTCAAAGAGTAGGACGCCTTTCTTTTTCAAAGCCCACACGAGTTGGTGGCACTTTT-T
1 AGTCCTCAAAGAGCAGGACGCC--TC---TT-AAAGCCCACACAAGTTGGTGGCA-TTTTCC
*
33964 TGTCCTCAAAGAGCAGGACGC
1 AGTCCTCAAAGAGCAGGACGC
33985 ACTTTATTTT
Statistics
Matches: 367, Mismatches: 36, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
54 2 0.01
55 318 0.87
56 2 0.01
57 1 0.00
60 2 0.01
61 38 0.10
62 4 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:34021 original size:42 final size:42
Alignment explanation
Indices: 33962--34114 Score: 182
Period size: 42 Copynumber: 3.6 Consensus size: 42
33952 GTGGCACTTT
33962 TTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTCTCC
1 TTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTCTCC
* * * * ** * *
34004 TTTGTCTTCAAAGAGCAGGACACACCTCATTCCCTTATTTTCTCT
1 TTTGTCCTCAAAGAGCAGGACGCACTTTATT---TTCCTCTCTCC
*
34049 TTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCT-TTC
1 TTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTCTCC
34090 TTCTGTCCTCAAAGAGCAGGACGCA
1 TT-TGTCCTCAAAGAGCAGGACGCA
34115 TTTCGTTTTC
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 3 0.03
42 53 0.59
45 34 0.38
ACGTcount: A:0.22, C:0.29, G:0.15, T:0.35
Consensus pattern (42 bp):
TTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTCTCC
Found at i:34854 original size:13 final size:13
Alignment explanation
Indices: 34836--34860 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34826 ATTATTGAAT
34836 GTATCGATACATG
1 GTATCGATACATG
34849 GTATCGATACAT
1 GTATCGATACAT
34861 CGATCTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
GTATCGATACATG
Found at i:37351 original size:28 final size:27
Alignment explanation
Indices: 37287--37352 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
37277 CATAATCGGA
*
37287 GATACTCCAACCCCGTTAATCATCGGG
1 GATACTCCAACCCCGTTAATCATAGGG
*
37314 GATACTCCAACCCCGTTATTTCCA-AGGG
1 GATACTCCAACCCCGTTA-AT-CATAGGG
37342 GATACTCCAAC
1 GATACTCCAAC
37353 TCCGGCTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
27 18 0.51
28 15 0.43
29 2 0.06
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (27 bp):
GATACTCCAACCCCGTTAATCATAGGG
Found at i:37442 original size:79 final size:78
Alignment explanation
Indices: 37312--37881 Score: 676
Period size: 79 Copynumber: 7.2 Consensus size: 78
37302 TTAATCATCG
* *
37312 GGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACTCCGGCTTTATTTCTAAAATATTG
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTG
37377 ATTTCTCATAATC
66 ATTTCTCATAATC
* * *
37390 GGGAATACTCCAACCCCGTTATTTCTGAGGGGATATTCCAACCCCGGTTTTATTTCTAAAATATT
1 GGG-ATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATT
*
37455 GATTTCTGATAATC
65 GATTTCTCATAATC
**
37469 GGGGATACTTTAA-CCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATT
1 -GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATT
*
37533 GATTTCTCACAATC
65 GATTTCTCATAATC
* * *
37547 GGAGATGCTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATT
1 GG-GATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATT
*
37612 GATTTCTCACAATC
65 GATTTCTCATAATC
* * * * * *
37626 AGGGATACTCCAATCCCATTATTTCCAAGGAGATACTCCAATCCCGGCTTTATTCCTAAAATATT
1 -GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATT
37691 GATTTCTCATAATC
65 GATTTCTCATAATC
** * ** * * **
37705 GAGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCGCGATTTTATTTTTAAAACACC
1 G-GGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATT
* *
37770 AATTT-TCTATAATTA
65 GATTTCTC-ATAA-TC
* * ** * * * **
37785 GGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCCAGAACACCG
1 GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTG
*
37850 ATTTTTCATAATC
66 ATTTCTCATAATC
* *
37863 AGGGGTACTCCAGCCCCGT
1 -GGGATACTCCAACCCCGT
37882 CGTCATCTCC
Statistics
Matches: 426, Mismatches: 56, Indels: 19
0.85 0.11 0.04
Matches are distributed among these distances:
77 2 0.00
78 74 0.17
79 341 0.80
80 9 0.02
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (78 bp):
GGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCTAAAATATTG
ATTTCTCATAATC
Found at i:37650 original size:236 final size:235
Alignment explanation
Indices: 37312--37829 Score: 682
Period size: 236 Copynumber: 2.2 Consensus size: 235
37302 TTAATCATCG
* *
37312 GGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACTCCGGCTTTATTTCTAAAATATTG
1 GGGATACTCCAA-CCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATTG
* * ** * * *
37377 ATTTCTCATAATCGGGAATACTCCAACCCCGTTATTTCTGAGGGGATATTCCAACCCCGGTTTTA
65 ATTTCTCACAATCGGGAATACTCCAACCCCATTATTTCCAAGGAGATACTCCAACCCCGGCTTTA
* * * **
37442 TTTCTAAAATATTGATTTCTGATAATCGGGGATACTTTAA-CCCGTTATTTCCGAGGGGATACTC
130 TTCCTAAAATATTGATTTCTCATAATCGAGGATACTCCAACCCCGTTATTTCCGAGGGGATACTC
* * ***
37506 CAACCCCGGCTTTATTTCTAAAATATTGA-TTTCTCACAATC
195 CAACCCCGACTTTATTTCTAAAACACCAATTTTCT-ACAATC
* *
37547 GGAGATGCTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATT
1 GG-GATACTCCAACC-CGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATT
* *
37612 GATTTCTCACAATCAGGG-ATACTCCAATCCCATTATTTCCAAGGAGATACTCCAATCCCGGCTT
64 GATTTCTCACAATC-GGGAATACTCCAACCCCATTATTTCCAAGGAGATACTCCAACCCCGGCTT
**
37676 TATTCCTAAAATATTGATTTCTCATAATCGAGGATACTCCAACCCCGTTATTTTTGAGGGGATAC
128 TATTCCTAAAATATTGATTTCTCATAATCGAGGATACTCCAACCCCGTTATTTCCGAGGGGATAC
* * * * *
37741 TCCAACCGCGATTTTATTTTTAAAACACCAATTTTCTATAATTA
193 TCCAACCCCGACTTTATTTCTAAAACACCAATTTTCTACAA-TC
37785 GGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCCG
1 GGGATACTCCAACCC-GTTATTTCCAAGGGGATACTCCAACCCCG
37830 ATTTTATTTC
Statistics
Matches: 244, Mismatches: 32, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
235 4 0.02
236 144 0.59
237 88 0.36
238 8 0.03
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (235 bp):
GGGATACTCCAACCCGTTATTTCCAAGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATTGA
TTTCTCACAATCGGGAATACTCCAACCCCATTATTTCCAAGGAGATACTCCAACCCCGGCTTTAT
TCCTAAAATATTGATTTCTCATAATCGAGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCC
AACCCCGACTTTATTTCTAAAACACCAATTTTCTACAATC
Found at i:41184 original size:79 final size:79
Alignment explanation
Indices: 41048--41251 Score: 214
Period size: 79 Copynumber: 2.6 Consensus size: 79
41038 GAGATAATAA
* * * ** * *
41048 CGGGGTTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCTCGGTTGTGAGAAATCGATG
1 CGGGGTTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-
*
41112 A-TCAGAAAAAAAAAT
64 ATTCAGAAAAAAAAAC
*
41127 CGGGATTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
** ** * *
41192 TTTGGGAATAAAGC
66 TCAGAAAAAAAAAC
* * *
41206 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCC
41252 GATGAGATAA
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
78 7 0.07
79 97 0.93
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
TCAGAAAAAAAAAC
Found at i:41246 original size:28 final size:28
Alignment explanation
Indices: 41206--41277 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
41196 GGAATAAAGC
**
41206 CGGGGTTGGAGTATCCCCTCGGA-AGTAA
1 CGGGGTTGGAGTATCCCCGAGGAGA-TAA
*
41234 CGGGGTTGGAGTATCCCCGATGAGATAA
1 CGGGGTTGGAGTATCCCCGAGGAGATAA
*
41262 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
41278 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.36, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAGATAA
Found at i:41486 original size:51 final size:51
Alignment explanation
Indices: 41265--41637 Score: 234
Period size: 51 Copynumber: 7.1 Consensus size: 51
41255 GAGATAACGA
* * * *
41265 GGTTGGAGTATCCTCGATTGTGAAAATTTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTA-TTTTGGAAATAAAATCGG
* * * * * * *
41317 AGTTGGAGTATCCCCGATTAAAGGAAAAATTGGTGTTTTGAAAAGAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTAGTATTTTGGAAATAAAATCGG
* * * **
41370 GGTTGGAGTAT-CCCGATTGTGGAAAAATTAGTGTTTTAGCGATAAAATCGG
1 GGTTGGAGTATCCCCGATTAT-GAAAAATTAGTATTTTGGAAATAAAATCGG
* * *
41421 GGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAATCGG
** *** **** * *
41472 GGTTGGAGTATCCCCTCGAAAAT-AACGGGGTTGGAGTATCCCCGATGAT-TAA-CGG
1 GGTTGGAGTAT-CCC-CGATTATGAA--AAATT--AGTATTTTGGA-AATAAAATCGG
* * * *
41527 GGTTGGAGTATCCCCGATTGTGAAAATTTGGTGTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATT--AGTATTTTGGAAATAAAATCGG
* * * *
41580 AGTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTCTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGA-AAAATTAGTATTTTGGAAATAAAATCGG
*
41631 AGTTGGA
1 GGTTGGA
41638 ATTACCTCGA
Statistics
Matches: 244, Mismatches: 62, Indels: 31
0.72 0.18 0.09
Matches are distributed among these distances:
51 95 0.39
52 49 0.20
53 61 0.25
54 16 0.07
55 14 0.06
56 7 0.03
57 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAATCGG
Found at i:41532 original size:27 final size:27
Alignment explanation
Indices: 41469--41544 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 27
41459 GAAATAAAGT
41469 CGGGGTTGGAGTATCCCCTCGA-AAATAA
1 CGGGGTTGGAGTAT-CCC-CGATAAATAA
* *
41497 CGGGGTTGGAGTATCCCCGATGATTAA
1 CGGGGTTGGAGTATCCCCGATAAATAA
41524 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
41545 TGTGAAAATT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 3 0.07
27 28 0.62
28 14 0.31
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.24
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGATAAATAA
Found at i:44025 original size:13 final size:13
Alignment explanation
Indices: 44007--44065 Score: 60
Period size: 13 Copynumber: 5.0 Consensus size: 13
43997 ACAAAGATCC
44007 ATGTATCGATACA
1 ATGTATCGATACA
44020 ATGTATCGATACA
1 ATGTATCGATACA
44033 CA-G-A---A-A-A
1 -ATGTATCGATACA
44040 ATGTATCGATACA
1 ATGTATCGATACA
44053 ATGTATCGATACA
1 ATGTATCGATACA
44066 CAGAAAAATG
Statistics
Matches: 38, Mismatches: 0, Indels: 16
0.70 0.00 0.30
Matches are distributed among these distances:
6 1 0.03
7 2 0.05
8 2 0.05
9 1 0.03
11 1 0.03
12 2 0.05
13 28 0.74
14 1 0.03
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.27
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:44028 original size:33 final size:33
Alignment explanation
Indices: 43986--44085 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
43976 AAAATTTCCA
* ***
43986 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACACAGAAAAATGTATCGATAC
44019 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACACAGAAAAATGTATCGATAC
44052 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACACAGAAAAATGTATCGATAC
44085 A
1 A
44086 TTTCCTTGGC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACACAGAAAAATGTATCGATAC
Found at i:44044 original size:20 final size:20
Alignment explanation
Indices: 44019--44085 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 20
44009 GTATCGATAC
44019 AATGTATCGATACACAGAAA
1 AATGTATCGATACACAGAAA
44039 AATGTATCGAT--AC-----
1 AATGTATCGATACACAGAAA
44052 AATGTATCGATACACAGAAA
1 AATGTATCGATACACAGAAA
44072 AATGTATCGATACA
1 AATGTATCGATACA
44086 TTTCCTTGGC
Statistics
Matches: 40, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 11 0.28
15 2 0.05
18 2 0.05
20 25 0.62
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (20 bp):
AATGTATCGATACACAGAAA
Found at i:44129 original size:19 final size:18
Alignment explanation
Indices: 44105--44172 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
44095 CAGTAGCTAA
44105 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
44124 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
44139 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
44156 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
44173 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:44145 original size:13 final size:13
Alignment explanation
Indices: 44127--44151 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44117 ACAATACTTA
44127 TGTATCGATACAT
1 TGTATCGATACAT
44140 TGTATCGATACA
1 TGTATCGATACA
44152 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:44149 original size:32 final size:32
Alignment explanation
Indices: 44108--44170 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
44098 TAGCTAATTA
*
44108 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
44140 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
44171 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:44962 original size:119 final size:116
Alignment explanation
Indices: 44757--44974 Score: 255
Period size: 119 Copynumber: 1.9 Consensus size: 116
44747 TGGAAAGGGT
* * * * * *
44757 GTCCACTTTTCAAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAAGACCAAGGAAG
1 GTCCAATTTTCAAAGACAAAGGAAAAGAGAATGAAATACGTCCTGCTCCTTGAAGACAAAAGAAG
44822 AGAAGAAAAGGAAAGTGTCCTGCT-TCTTGAGGACAAAGTGAAAAAGAGTAC
66 AGAAGAAAAGGAAAGTGTCCTGCTCT-TTGAGGACAAAGTGAAAAAGAGTAC
* *
44873 GTCCAATTTTCCAAAGACAAAGGAAAAAGGGAAATGAAATACGTCCTGCT-CTCTGAGGACAAAA
1 GTCCAATTTT-CAAAGACAAAGG-AAAAGAG-AATGAAATACGTCCTGCTCCT-TGAAGACAAAA
* *
44937 GAA-AGAGGAAAA-TAAAGTGTATCCTGCTCTTTGAGGAC
62 GAAGAGAAGAAAAGGAAAGTG--TCCTGCTCTTTGAGGAC
44975 TAAGAAGTGC
Statistics
Matches: 85, Mismatches: 10, Indels: 11
0.80 0.09 0.10
Matches are distributed among these distances:
116 9 0.11
117 17 0.20
118 16 0.19
119 42 0.49
120 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.24, T:0.20
Consensus pattern (116 bp):
GTCCAATTTTCAAAGACAAAGGAAAAGAGAATGAAATACGTCCTGCTCCTTGAAGACAAAAGAAG
AGAAGAAAAGGAAAGTGTCCTGCTCTTTGAGGACAAAGTGAAAAAGAGTAC
Found at i:45253 original size:171 final size:169
Alignment explanation
Indices: 45019--45460 Score: 617
Period size: 171 Copynumber: 2.6 Consensus size: 169
45009 GGCGAAGGCA
* * * *
45019 TCCTGCTCTCTGAGGACTGGGAAGTGCTACCAACTTGTGTGGGCTTT--AA-G-AGGTGTCCTGC
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAGGCGTCCTGC
* *
45080 TCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTGGGGA
66 TCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTGGGGA
*
45145 CTGAAAGGTGCCACTAACTTGTGTAGGCTTTGAGAGGTG
131 CTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAGAGGTG
*
45184 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAA-G-GAAGGCGTCCT
* * * *
45249 GCTCTCTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTCGAAAGGTGTCCTGCTCTTTGGG
64 GCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTGGG
*
45314 GACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTG
129 GACTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAGAGGTG
* * * * *
45355 TCTTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTG-AAAG-GAAGGCGTCC
* *
45419 TGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGAGTGGGCTT
63 TGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTT
45461 TAAAAGAAAA
Statistics
Matches: 244, Mismatches: 25, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
165 43 0.18
167 2 0.01
170 28 0.11
171 168 0.69
172 3 0.01
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.28
Consensus pattern (169 bp):
TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAGGCGTCCTGC
TCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTGGGGA
CTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAGAGGTG
Found at i:45354 original size:29 final size:29
Alignment explanation
Indices: 45268--45405 Score: 89
Period size: 26 Copynumber: 5.0 Consensus size: 29
45258 GGACTGGGAA
*
45268 GTGCCACCAACTTGTGTGGGCTTCGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTGAAAG
** *
45297 GTGTCCTGC-TCTT-TG-GGGAC--TGAAAG
1 GTG-CCACCAACTTGTGTGGG-CTTTGAAAG
*
45323 GTGCCACCAACTTGTGTGGGCTTTGAGAG
1 GTGCCACCAACTTGTGTGGGCTTTGAAAG
*** *
45352 GTGTCTTGC-TCTT-TG-GGGAC--TGAAAG
1 GTG-CCACCAACTTGTGTGGG-CTTTGAAAG
45378 GTGCCACCAACTTGTGTGGGCTTTGAAA
1 GTGCCACCAACTTGTGTGGGCTTTGAAA
45406 AGAAAAAGCA
Statistics
Matches: 78, Mismatches: 17, Indels: 28
0.63 0.14 0.23
Matches are distributed among these distances:
25 5 0.06
26 22 0.28
27 12 0.15
28 12 0.15
29 22 0.28
30 5 0.06
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.29
Consensus pattern (29 bp):
GTGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:45364 original size:226 final size:225
Alignment explanation
Indices: 44957--45520 Score: 740
Period size: 226 Copynumber: 2.5 Consensus size: 225
44947 AATAAAGTGT
*
44957 ATCCTGCTCTTTGAGGACTAAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGAAGGCATCC
1 ATCCTGCTCTTTGAGGACTAA-AA-TGCCACCAACTTGTGTGGGCTTT-AAAGGAGAAGGCATCC
* *
45022 TGCTCTCTGAGGACTGGGAAGTGCTACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTAA
63 TGCTCTCTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTGAAGAGGTGTCCTGCTCTTTAA
45087 GGACTAGAAAATGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTGGGGACTGAAAG
128 GGACTAGAAAATGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTGGGGACTGAAAG
* * *
45152 GTGCCACTAACTTGTGTAGGCTTTG-AG-AGGT
193 GTGCCACCAACTTGTGTAGGCTTTGAAGAAAGC
* * *
45183 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGAAGGCGTCC
1 ATCCTGCTCTTTGAGGACT--AAAATGCCACCAACTTGTGTGGGCTTT-AAAGGAGAAGGCATCC
*
45248 TGCTCTCTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTCGAA-AGGTGTCCTGCTCTTTG
63 TGCTCTCTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTT-GAAGAGGTGTCCTGCTCTTTA
* * * * * *
45312 GGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCTTGCTCTTTGGGGACTGAA
127 AGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTGGGGACTGAA
*
45376 AGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
191 AGGTGCCACCAACTTGTGTAGGCTTTG--AAG--AAAGC
* * * * **
45415 ATCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGAGTGGGCTTTAAAAGAAAAGGCATCCCA
1 ATCCTGCTCTTTGAGGACTAAA-ATGCCACCAACTTGTGTGGGCTTTAAAGGAGAAGGCATCCTG
* ** *
45480 CTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTT
65 CTCTCTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTT
45521 TAAAAGAAAA
Statistics
Matches: 297, Mismatches: 30, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
225 4 0.01
226 191 0.64
227 4 0.01
228 2 0.01
229 2 0.01
230 52 0.18
231 22 0.07
232 20 0.07
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (225 bp):
ATCCTGCTCTTTGAGGACTAAAATGCCACCAACTTGTGTGGGCTTTAAAGGAGAAGGCATCCTGC
TCTCTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTGAAGAGGTGTCCTGCTCTTTAAGGA
CTAGAAAATGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTGGGGACTGAAAGGTG
CCACCAACTTGTGTAGGCTTTGAAGAAAGC
Found at i:45458 original size:60 final size:60
Alignment explanation
Indices: 44957--45558 Score: 519
Period size: 55 Copynumber: 10.4 Consensus size: 60
44947 AATAAAGTGT
* **
44957 ATCCTGCTCTTTGAGGACT-AAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGAAGGC
1 ATCCTGCTCTTTGAGGACTGAA-AGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGC
* * * *
45018 ATCCTGCTCTCTGAGGACTGGGAA-GTGCTACCAACTTGTGTGGGCTTT--AAG---AGGT
1 ATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* * * * *
45073 GTCCTGCTCTTTAAGGACTAGAAA-ATGCCACCAACTTGTGTGGGC-TT---CG-AAAGGG
1 ATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* * * * * *
45128 GTCCTGCTCTTTGGGGACTGAAAGGTGCCACTAACTTGTGTAGGCTTT----G-AGAGGT
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* * * **
45183 GTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGAAGGC
1 ATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGC
* * * * *
45244 GTCCTGCTCTCTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGC-TT---CG-AAAGGT
1 ATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* * * *
45299 GTCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AGAGGT
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
* * * *
45354 GTCTTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGC
*
45415 ATCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGAGTGGGCTTTAAAAGAAAAGGC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
** ** *
45474 ATCCCACTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAATGC
1 ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
*
45534 GTCCTGCTCTTTGAGGACTGGAAAG
1 ATCCTGCTCTTTGAGGACT-GAAAG
45559 CGGAAGGAGA
Statistics
Matches: 462, Mismatches: 56, Indels: 46
0.82 0.10 0.08
Matches are distributed among these distances:
53 1 0.00
54 9 0.02
55 218 0.47
56 9 0.02
58 1 0.00
59 30 0.06
60 83 0.18
61 109 0.24
62 1 0.00
63 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (60 bp):
ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGC
Found at i:46553 original size:16 final size:16
Alignment explanation
Indices: 46534--46577 Score: 61
Period size: 17 Copynumber: 2.7 Consensus size: 16
46524 TCTTTTCTCT
*
46534 CTTTTTCTTTGTTTTG
1 CTTTTTTTTTGTTTTG
46550 CTTTTTGTTTTGTTTTG
1 CTTTTT-TTTTGTTTTG
*
46567 TTTTTTTTTTG
1 CTTTTTTTTTG
46578 AAGAGAAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 11 0.44
17 14 0.56
ACGTcount: A:0.00, C:0.07, G:0.14, T:0.80
Consensus pattern (16 bp):
CTTTTTTTTTGTTTTG
Found at i:46561 original size:17 final size:16
Alignment explanation
Indices: 46541--46577 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
46531 TCTCTTTTTC
46541 TTTGTTTTGCTTTTTGT
1 TTTGTTTTG-TTTTTGT
*
46558 TTTGTTTTGTTTTTTT
1 TTTGTTTTGTTTTTGT
46574 TTTG
1 TTTG
46578 AAGAGAAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.00, C:0.03, G:0.16, T:0.81
Consensus pattern (16 bp):
TTTGTTTTGTTTTTGT
Found at i:58952 original size:28 final size:28
Alignment explanation
Indices: 58912--58983 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
58902 GGAATAAAGC
**
58912 CGGGGTTGGAGTATCCCCTCGGA-AGTAA
1 CGGGGTTGGAGTATCCCCGAGGACA-TAA
*
58940 CGGGGTTGGAGTATCCCCGATGACATAA
1 CGGGGTTGGAGTATCCCCGAGGACATAA
*
58968 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
58984 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGACATAA
Found at i:59036 original size:52 final size:51
Alignment explanation
Indices: 58971--59190 Score: 246
Period size: 51 Copynumber: 4.3 Consensus size: 51
58961 GACATAACGA
* * *
58971 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCTCGATTGTGAAAAATTAGT-GTTTTGGAAATAAAACCGG
* * *
59023 AGTTGGAGTATCCTCGATTAAAG-GAAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCTCGATT---GTGAAAAATTAGTGTTTTGGAAATAAAACCGG
* *
59076 GGTTGGAGTAT-CTCGATTGTGGAAAAATTAGTGTTTTAGAGATAAAACCGG
1 GGTTGGAGTATCCTCGATTGT-GAAAAATTAGTGTTTTGGAAATAAAACCGG
* * * * * **
59127 GGTTGGAGTATCCCCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCTCGATTGTGAAAAATTAGTGTTTTGGAAATAAAACCGG
59178 GGTTGGAGTATCC
1 GGTTGGAGTATCC
59191 CCTCGAAAAT
Statistics
Matches: 144, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
49 1 0.01
51 73 0.51
52 32 0.22
53 26 0.18
54 11 0.08
55 1 0.01
ACGTcount: A:0.33, C:0.10, G:0.27, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCTCGATTGTGAAAAATTAGTGTTTTGGAAATAAAACCGG
Found at i:59132 original size:104 final size:102
Alignment explanation
Indices: 58971--59189 Score: 260
Period size: 104 Copynumber: 2.1 Consensus size: 102
58961 GACATAACGA
* * * *
58971 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCC
1 GGTTGGAGTAT-CTCGATTGTGAAAAATTAGTAGTTTTAGAAATAAAACCGGAGTTGGAGTATCC
* *** *
59036 TCGATTAAAGGAAAAATTGGTGTTTTGAAAATAAAACCGG
65 CCGATT--AGGAAAAATCAATATTTTGAAAATAAAACCGG
* *
59076 GGTTGGAGTATCTCGATTGTGGAAAAATTAGT-GTTTTAGAGATAAAACCGGGGTTGGAGTATCC
1 GGTTGGAGTATCTCGATTGT-GAAAAATTAGTAGTTTTAGAAATAAAACCGGAGTTGGAGTATCC
* * **
59140 CCGATTATGAAAAATCAATATTTTGGAAATAAAGTCGG
65 CCGATTAGGAAAAATCAATATTTTGAAAATAAAACCGG
59178 GGTTGGAGTATC
1 GGTTGGAGTATC
59190 CCCTCGAAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
102 36 0.37
104 41 0.42
105 21 0.21
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (102 bp):
GGTTGGAGTATCTCGATTGTGAAAAATTAGTAGTTTTAGAAATAAAACCGGAGTTGGAGTATCCC
CGATTAGGAAAAATCAATATTTTGAAAATAAAACCGG
Found at i:59242 original size:27 final size:27
Alignment explanation
Indices: 59175--59250 Score: 91
Period size: 27 Copynumber: 2.8 Consensus size: 27
59165 GAAATAAAGT
59175 CGGGGTTGGAGTATCCCCTCGA-AAATAA
1 CGGGGTTGGAGTAT-CCC-CGATAAATAA
* * * *
59203 CAGGGTTGTAGTATCCCCGATGATTAA
1 CGGGGTTGGAGTATCCCCGATAAATAA
59230 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
59251 TGTGAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 3 0.07
27 26 0.63
28 12 0.29
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCGATAAATAA
Found at i:61730 original size:13 final size:13
Alignment explanation
Indices: 61712--61737 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
61702 ACAAAGATCC
61712 ATGTATCGATACA
1 ATGTATCGATACA
61725 ATGTATCGATACA
1 ATGTATCGATACA
61738 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:61736 original size:33 final size:33
Alignment explanation
Indices: 61694--61757 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
61684 ATTTCCAAAC
***
61694 GTATCGATACAAAGATCCATGTATCGATACAAT
1 GTATCGATACAAAGAAAAATGTATCGATACAAT
*
61727 GTATCGATACACAGAAAAATGTATCGATACA
1 GTATCGATACAAAGAAAAATGTATCGATACA
61758 TTTCCTTGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.25
Consensus pattern (33 bp):
GTATCGATACAAAGAAAAATGTATCGATACAAT
Found at i:61817 original size:13 final size:13
Alignment explanation
Indices: 61799--61823 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61789 ACAATATTTA
61799 TGTATCGATACAT
1 TGTATCGATACAT
61812 TGTATCGATACA
1 TGTATCGATACA
61824 AAACTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:61821 original size:32 final size:32
Alignment explanation
Indices: 61780--61842 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
61770 TAGCTAATTA
* *
61780 TGTATCGATACAATATTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
*
61812 TGTATCGATACAAAACTTATTTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
61843 AATTGTTGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:63062 original size:21 final size:20
Alignment explanation
Indices: 63047--63085 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
63037 TTCAAATTTC
63047 ATCT-TTTTTGCATCAAAATT
1 ATCTGTTTTT-CATCAAAATT
63067 ATCTGTTTTTCATCAAAAT
1 ATCTGTTTTTCATCAAAAT
63086 CATCAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.31, C:0.15, G:0.05, T:0.49
Consensus pattern (20 bp):
ATCTGTTTTTCATCAAAATT
Found at i:65497 original size:26 final size:23
Alignment explanation
Indices: 65446--65489 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
65436 GTTAAAGTAT
*
65446 AAATGTTTTTCAAGTAATAAATC
1 AAATATTTTTCAAGTAATAAATC
65469 AAATATTTTTCAAGTAA-AAAT
1 AAATATTTTTCAAGTAATAAAT
65490 AATTCAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (23 bp):
AAATATTTTTCAAGTAATAAATC
Found at i:65613 original size:20 final size:19
Alignment explanation
Indices: 65590--65638 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
65580 CACCCAGATA
*
65590 TATCGATACATATTGCTTAG
1 TATCGATACATATT-CGTAG
* *
65610 TATCGATACGTGTTCGTAG
1 TATCGATACATATTCGTAG
65629 TATCGATACA
1 TATCGATACA
65639 CCTTGAAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (19 bp):
TATCGATACATATTCGTAG
Found at i:65907 original size:10 final size:10
Alignment explanation
Indices: 65889--65930 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
65879 ATAGTTGAAG
65889 AACAACAAGA
1 AACAACAAGA
*
65899 AAAAACAAGA
1 AACAACAAGA
*
65909 ACCAACAAGA
1 AACAACAAGA
*
65919 AACATCAAGA
1 AACAACAAGA
65929 AA
1 AA
65931 TCCAAGCATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.69, C:0.19, G:0.10, T:0.02
Consensus pattern (10 bp):
AACAACAAGA
Found at i:69726 original size:15 final size:15
Alignment explanation
Indices: 69705--69741 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
69695 ATAGAACTCA
69705 CAATCATCAACAATT
1 CAATCATCAACAATT
*
69720 TAATCATCAACAATT
1 CAATCATCAACAATT
69735 CAATCAT
1 CAATCAT
69742 AATAAAGAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (15 bp):
CAATCATCAACAATT
Found at i:70153 original size:2 final size:2
Alignment explanation
Indices: 70137--70170 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
70127 TTCTTGGTGA
*
70137 AG AG AG AA AG CAG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG -AG AG AG AG AG AG AG AG AG AG AG A
70171 ACTAAAGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.53, C:0.03, G:0.44, T:0.00
Consensus pattern (2 bp):
AG
Found at i:70492 original size:16 final size:15
Alignment explanation
Indices: 70471--70504 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
70461 AATTAATTAA
*
70471 TTTTTTATTTACTTCT
1 TTTTTTACTTACTT-T
70487 TTTTTTACTTACTTT
1 TTTTTTACTTACTTT
70502 TTT
1 TTT
70505 ACTCAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTTACTTACTTT
Found at i:73573 original size:16 final size:16
Alignment explanation
Indices: 73552--73586 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
73542 GAAGCCTCTA
73552 AAACAAAAAAAAAAAG
1 AAACAAAAAAAAAAAG
* *
73568 AAACAAAGAAATAAAG
1 AAACAAAAAAAAAAAG
73584 AAA
1 AAA
73587 AACATACATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.83, C:0.06, G:0.09, T:0.03
Consensus pattern (16 bp):
AAACAAAAAAAAAAAG
Found at i:79323 original size:34 final size:34
Alignment explanation
Indices: 79280--79347 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
79270 ACCTCAAGTG
*
79280 AAACATCCACAAGTAATGTTGTTGGTAGAGGTAA
1 AAACATCCACAAGTAATGTTGCTGGTAGAGGTAA
* *
79314 AAACATCCACAAGTAGTGTTGCTGGTAGGGGTAA
1 AAACATCCACAAGTAATGTTGCTGGTAGAGGTAA
79348 CTCCCTTGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.25
Consensus pattern (34 bp):
AAACATCCACAAGTAATGTTGCTGGTAGAGGTAA
Found at i:80934 original size:22 final size:21
Alignment explanation
Indices: 80895--80943 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 21
80885 ATGATGAGAA
*
80895 AAAAGAAAAAAAACAAAATAATTT
1 AAAA-AAAAAAAA-AAAA-AAGTT
80919 AAAAAAAAAGAAAAAAAAAGTT
1 AAAAAAAAA-AAAAAAAAAGTT
80941 AAA
1 AAA
80944 GCTCAAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 7 0.30
23 9 0.39
24 7 0.30
ACGTcount: A:0.80, C:0.02, G:0.06, T:0.12
Consensus pattern (21 bp):
AAAAAAAAAAAAAAAAAAGTT
Found at i:81001 original size:12 final size:11
Alignment explanation
Indices: 80954--81004 Score: 52
Period size: 12 Copynumber: 4.6 Consensus size: 11
80944 GCTCAAATGA
80954 AAAGAAAAGAGT
1 AAAGAAAAGA-T
80966 AAAGAAAAG-T
1 AAAGAAAAGAT
* *
80976 AAA-AAAAAAA
1 AAAGAAAAGAT
80986 AAAGGAAAAGAT
1 AAA-GAAAAGAT
80998 AAAGAAA
1 AAAGAAA
81005 CGAAGGTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
9 4 0.12
10 7 0.22
11 4 0.12
12 17 0.53
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (11 bp):
AAAGAAAAGAT
Found at i:86327 original size:59 final size:59
Alignment explanation
Indices: 86184--86364 Score: 220
Period size: 59 Copynumber: 3.1 Consensus size: 59
86174 ATTCTAGATA
*
86184 TTTGGTGGTGTATCCAAAGATTCT-AGTGGTGGTAACTAGAATATTCTTAGAAGCCAAGTC
1 TTTGGTGGTGTATCCAAAGATTCTGA-TGGTGGTAACTAGAATATTC-TAGAAGTCAAGTC
* * * *** *
86244 ATTGGTGGTGTATCCAAGGCTTCTGATGGCATTAACTAGATTATTCTAGAAGTCAAGTC
1 TTTGGTGGTGTATCCAAAGATTCTGATGGTGGTAACTAGAATATTCTAGAAGTCAAGTC
* * * * *
86303 TTTGATGGTGTATCCAAAGTTTCTGGTGGTGGTGACCAGAATATTCTAGAAGTCAAGTC
1 TTTGGTGGTGTATCCAAAGATTCTGATGGTGGTAACTAGAATATTCTAGAAGTCAAGTC
86362 TTT
1 TTT
86365 AGTTGATATA
Statistics
Matches: 101, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
59 63 0.62
60 37 0.37
61 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.35
Consensus pattern (59 bp):
TTTGGTGGTGTATCCAAAGATTCTGATGGTGGTAACTAGAATATTCTAGAAGTCAAGTC
Found at i:86403 original size:59 final size:59
Alignment explanation
Indices: 86194--86388 Score: 160
Period size: 59 Copynumber: 3.3 Consensus size: 59
86184 TTTGGTGGTG
* * * * * * * *
86194 TATCCAAAGATTCTAGTGGTGGTAACTAGAATATTCTTAGAAGCCAAGTCATTGGTGGTG
1 TATCCAAAGCTTCTAGTGGTGCTGACTAGAATATTC-TAGAAGTCAAGTCTTTGATGATA
* *** * * * *
86254 TATCCAAGGCTTCT-GATGGCATTAACTAGATTATTCTAGAAGTCAAGTCTTTGATGGTG
1 TATCCAAAGCTTCTAG-TGGTGCTGACTAGAATATTCTAGAAGTCAAGTCTTTGATGATA
* * * * *
86313 TATCCAAAGTTTCTGGTGGTGGTGACCAGAATATTCTAGAAGTCAAGTCTTTAGTTGATA
1 TATCCAAAGCTTCTAGTGGTGCTGACTAGAATATTCTAGAAGTCAAGTCTTT-GATGATA
86373 TATCCAAAGCTT-TAGT
1 TATCCAAAGCTTCTAGT
86389 AGGGCTATCT
Statistics
Matches: 110, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
59 66 0.60
60 44 0.40
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (59 bp):
TATCCAAAGCTTCTAGTGGTGCTGACTAGAATATTCTAGAAGTCAAGTCTTTGATGATA
Found at i:86452 original size:36 final size:36
Alignment explanation
Indices: 86394--86463 Score: 86
Period size: 36 Copynumber: 1.9 Consensus size: 36
86384 TTAGTAGGGC
* **
86394 TATCTAGAATTCAAAGTCTTTGGTAATATATCCACA
1 TATCTAGAATTAAAAGAATTTGGTAATATATCCACA
* **
86430 TATCTAGATTTAAAAGAATTTGGTGGTATATCCA
1 TATCTAGAATTAAAAGAATTTGGTAATATATCCA
86464 AAGATTTTAG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (36 bp):
TATCTAGAATTAAAAGAATTTGGTAATATATCCACA
Found at i:89564 original size:44 final size:44
Alignment explanation
Indices: 89514--89601 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
89504 CCTCCAAAAG
* * *
89514 AAGAAAGCAATAAAAAACGTAAATTTGAATGCCTCGTTTGTGAT
1 AAGAAAGCAATAAAAAACGTAAATTTAAATGCCTAGCTTGTGAT
* * *
89558 AAGAAAGTAATGAAAAGCGTAAATTTAAATGCCTAGCTTGTGAT
1 AAGAAAGCAATAAAAAACGTAAATTTAAATGCCTAGCTTGTGAT
89602 TTCAGTCTAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.27
Consensus pattern (44 bp):
AAGAAAGCAATAAAAAACGTAAATTTAAATGCCTAGCTTGTGAT
Found at i:91227 original size:15 final size:16
Alignment explanation
Indices: 91199--91231 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
91189 TGCAAACACT
91199 AAAATAAATCTTTTTAA
1 AAAATAAA-CTTTTTAA
91216 AAAATAAA-TTTTTAA
1 AAAATAAACTTTTTAA
91231 A
1 A
91232 TTTTTAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (16 bp):
AAAATAAACTTTTTAA
Found at i:92183 original size:16 final size:16
Alignment explanation
Indices: 92162--92201 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
92152 CAAGCTGAAG
*
92162 TCATTTTATGTTTA-A
1 TCATTTTATATTTAGA
92177 CTCATTTTATATTTAGA
1 -TCATTTTATATTTAGA
92194 TCATTTTA
1 TCATTTTA
92202 AATAGTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 21 0.95
17 1 0.05
ACGTcount: A:0.28, C:0.10, G:0.05, T:0.57
Consensus pattern (16 bp):
TCATTTTATATTTAGA
Found at i:98340 original size:118 final size:118
Alignment explanation
Indices: 98132--98364 Score: 396
Period size: 118 Copynumber: 2.0 Consensus size: 118
98122 CTATAAACTG
* *
98132 GGAGAAGCATTAAAGGATCCTATGGTTGATAGAGAAGGTACCAAAAGTTAGTTGGCAAACTGATT
1 GGAGAAGCACTAAAAGATCCTATGGTTGATAGAGAAGGTACCAAAAGTTAGTTGGCAAACTGATT
*
98197 TATCTCTCGCACACAAGACTGAACATAGCTTATGCTGTAAGTGTAGTCAGCTT
66 TATCTCTCACACACAAGACTGAACATAGCTTATGCTGTAAGTGTAGTCAGCTT
* *
98250 GGAGAAGCACTAAAAGATCTTATGG-TGATAGAGAAAGGTACCAGAAGTTAGTTGGCAAACTGAT
1 GGAGAAGCACTAAAAGATCCTATGGTTGATAGAG-AAGGTACCAAAAGTTAGTTGGCAAACTGAT
*
98314 TTATCTTTCACACACAAGACTGAACATAGCTTATGCTGTAAGTGTAGTCAG
65 TTATCTCTCACACACAAGACTGAACATAGCTTATGCTGTAAGTGTAGTCAG
98365 TCAATTTATG
Statistics
Matches: 108, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
117 8 0.07
118 100 0.93
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (118 bp):
GGAGAAGCACTAAAAGATCCTATGGTTGATAGAGAAGGTACCAAAAGTTAGTTGGCAAACTGATT
TATCTCTCACACACAAGACTGAACATAGCTTATGCTGTAAGTGTAGTCAGCTT
Found at i:101844 original size:90 final size:90
Alignment explanation
Indices: 101732--101912 Score: 290
Period size: 90 Copynumber: 2.0 Consensus size: 90
101722 CTGAGTCATG
* * *
101732 GTTTCATTCAAAAGTTCAGACTGTGCACCAGATAGAAAAACTTCTTTTGAGCTCTGGTTTTTCAC
1 GTTTCATTCAAAAGTTCAGACTGAGCACCAGATAGAAAAACTTCATTTGAGCTCTGGTTTTTAAC
*
101797 CTGACCATCATCTATTGCCTCATCA
66 CTGACCATCACCTATTGCCTCATCA
* *
101822 GTTTCATTCAAAAGTTCAGACTGAGCACCAGATAGGAAAACTTCATTTGAGCTCTGTTTTTTAAC
1 GTTTCATTCAAAAGTTCAGACTGAGCACCAGATAGAAAAACTTCATTTGAGCTCTGGTTTTTAAC
* *
101887 CTGCCCATCACCTTTTGCCTCATCA
66 CTGACCATCACCTATTGCCTCATCA
101912 G
1 G
101913 AGCTTTTATC
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
90 83 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.34
Consensus pattern (90 bp):
GTTTCATTCAAAAGTTCAGACTGAGCACCAGATAGAAAAACTTCATTTGAGCTCTGGTTTTTAAC
CTGACCATCACCTATTGCCTCATCA
Done.