Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold55
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4293517
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.26
Warning! 910309 characters in sequence are not A, C, G, or T
File 13 of 21
Found at i:2839270 original size:55 final size:55
Alignment explanation
Indices: 2839115--2839274 Score: 205
Period size: 55 Copynumber: 2.9 Consensus size: 55
2839105 GTTTTTGCAA
* * * *
2839115 CACTACTTTGCATGGCAGAACCAATGGAAATGAAAGTAGTTAAGCATAGTGCCAC
1 CACTATTTTGCATGGCAGAACCAATGGAAATGAGAGTAGCTGAGCATAGTGCCAC
* *
2839170 CACTATTTTGCATGGCAAAACCAATGCAAAT-AGGAGTAGCTGAGCATAGTGCCAC
1 CACTATTTTGCATGGCAGAACCAATGGAAATGA-GAGTAGCTGAGCATAGTGCCAC
* * * * *
2839225 CACTATTTTGTATGGTAGAGCCAATGGAAATGAGAGTAACCGAGCATAGT
1 CACTATTTTGCATGGCAGAACCAATGGAAATGAGAGTAGCTGAGCATAGT
2839275 ACTTGGAGTT
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 1 0.01
55 88 0.98
56 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (55 bp):
CACTATTTTGCATGGCAGAACCAATGGAAATGAGAGTAGCTGAGCATAGTGCCAC
Found at i:2841561 original size:56 final size:56
Alignment explanation
Indices: 2841495--2841607 Score: 226
Period size: 56 Copynumber: 2.0 Consensus size: 56
2841485 GATTTATTTG
2841495 AGGCTCCTAATTACTTGCTTAAAATATCAAAATTTTCATTCTTGAGGGGTACTCCA
1 AGGCTCCTAATTACTTGCTTAAAATATCAAAATTTTCATTCTTGAGGGGTACTCCA
2841551 AGGCTCCTAATTACTTGCTTAAAATATCAAAATTTTCATTCTTGAGGGGTACTCCA
1 AGGCTCCTAATTACTTGCTTAAAATATCAAAATTTTCATTCTTGAGGGGTACTCCA
2841607 A
1 A
2841608 CTTTATTTCT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (56 bp):
AGGCTCCTAATTACTTGCTTAAAATATCAAAATTTTCATTCTTGAGGGGTACTCCA
Found at i:2844734 original size:159 final size:158
Alignment explanation
Indices: 2844097--2845797 Score: 549
Period size: 159 Copynumber: 10.7 Consensus size: 158
2844087 CCTATTTGAT
* * * *
2844097 GAAAAGCTTTTCTTTTCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
1 GAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAAGACAAACATG
* * * *
2844162 AATTGTCATACTAATCCCCATTCTATTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
66 AATAGTCATACTAATCCTCATTCTTTTC-GGATTAGGCACCATAAACACAGTCTTCTCATAAGGA
* *
2844227 TACACGATATTGATGCTTTGGTTTCGCAA
130 TACACGATATTGATCCTTTGGTTTTGCAA
* * * * * *
2844256 AAAAAGCTTTT-TTCCCACCAATTTTTGA-AAAGTCTAAGTTCATGC-CTTAAATGAGACAAACA
1 GAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTTAAATAAGACAAACA
* * * * * * * * * **
2844318 TGGAT--TCTAGTAATGATCTTCATTCTTTTTGTCATTAGGCACTATAAACA-TGATCTGCTTGT
64 TGAATAGTC-A-TACTAATCCTCATTCTTTTCG-GATTAGGCACCATAAACACAG-TCTTCTCAT
* * * ** ** * ** *
2844380 TAGGATAAATGATATTGATGATTTTCTCTAACAT
125 AAGGATACACGATATTGATCCTTTGGTTTTGCAA
* * *** * * *
2844414 GGAAATCTTTTCTTTGCCTA--ATTTTCCTTAAAATCAAAGTTCATCCCTTGAAA-AAGACAAGC
1 GAAAAGCTTTTCTTT-CC-ACCATTTTTGATAAAATCAAAGTTCGTCTCTT-AAATAAGACAAAC
** * * * * * * *
2844476 ATCG-ATTCTCATGA-TAGTTTCCGC--TCTTTTCAAGATTGGGAACTA-AGAACACATTCCCTT
63 AT-GAATAGTCAT-ACTA--ATCCTCATTCTTTTC-GGATTAGGCACCATA-AACACAGT--CTT
* * * * * * ***
2844536 C-C-TTAGGATATAAGACATTGATGCTTTGGTCTCATAA
120 CTCATAAGGATACACGATATTGATCCTTTGGTTTTGCAA
* *
2844573 GAAAAGCTTTTCATTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
1 GAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAAGACAAACATG
* * * *
2844638 AATAGTCATACTAATCCTAATGCTTTTCGCGAATAGGCACCATAAACATAGTCTTCTCATAAGGA
66 AATAGTCATACTAATCCTCATTCTTTTCG-GATTAGGCACCATAAACACAGTCTTCTCATAAGGA
2844703 TACACGATATTGATCCTTTGGTTTTGCAA
130 TACACGATATTGATCCTTTGGTTTTGCAA
* * * * * *
2844732 GAAAGGC-TTT-TTTCCCCCTAATTTTTG-CAAAGTCTAAGTTCGTGC-CTCAAATAAGACAAAC
1 GAAAAGCTTTTCTTTCCACC--ATTTTTGATAAAATCAAAGTTCGT-CTCTTAAATAAGACAAAC
* * * * *
2844793 ATGAACTCTAGT-A-A-TGATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTACTC
63 ATGAA---TAGTCATACTAATCCTCATTC-TTTTCG-GATTAGGCACCATAAACACAGTCTTCTC
* * * * ** ** * * **
2844854 ATTAGGATAAATGTTATTGATGATTTTCTCTAGCTT
123 ATAAGGATACACGATATTGATCCTTTGGTTTTGCAA
* * * *** * * *
2844890 GGAAATCTTTTCTTTACC-CTATTTTCCTTAAAATCAAAGTTCATCTCTTAAAAAAGACAAGCAT
1 GAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAAGACAAACAT
** * * * * * *
2844954 CG-ATTCTTATAAC-AGT-CTCCATTCTTTTCAAGATTAGGGACC-TAGAACACATTC-CCTTCA
65 -GAATAGTCAT-ACTAATCCT-CATTCTTTTC-GGATTAGGCACCATA-AACACAGTCTTC-TCA
* * * * **
2845014 TTAGGATACATGACATTGATGCTTTGGGGTTGCAA
124 TAAGGATACACGATATTGATCCTTTGGTTTTGCAA
* * * * * * * *
2845049 TAAAGGCTTTTCTTTCAACTATTTTTAATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATG
1 GAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAAGACAAACATG
* * *
2845114 AATAGTCATACTAATCC-CTATTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTTATAAGG
66 AATAGTCATACTAATCCTC-ATTCTTTTC-GGATTAGGCACCATAAACACAGTCTTCTCATAAGG
* **
2845178 ATATACGATATTGA-CGCTTTGGTTTCACAA
129 ATACACGATATTGATC-CTTTGGTTTTGCAA
* * * * * * * * * *
2845208 -AAAGGCTTTT-TTCCCCCCAATTTTGGA-CAAGTCTAAGTTCATGC-CTCAAATGAGACAAACA
1 GAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTTAAATAAGACAAACA
* * * * * * * * * ** * * *
2845269 TGGAT--TCTAGTAATGATCTTCGTTCATTTCGTGATTAGGCACTATAAACAGATTCCCCGCTTT
64 TGAATAGTC-A-TACTAATCCTCATTCTTTTCG-GATTAGGCACCATAAACACAGTCTTCTCATA
* * ** ** * *
2845332 AGGATAAATGATATTGATGATTTTCTCTAGCATA
126 AGGATACACGATATTGATCCTTTGGTTTTGCA-A
* *** * * * * * *
2845366 G-AAATCTTTTCTTTGCCTA--ATTTTCCTTAAAATGAAAGTTCATCTCATGAAA-GAGATAAGC
1 GAAAAGCTTTTCTTT-CC-ACCATTTTTGATAAAATCAAAGTTCGTCTC-TTAAATAAGACAAAC
** * * ** * * * *
2845427 ATCG-ATTCTCATGA-TAGT-CTCCGTTCTTTTTAAGATTGGGAACTA-AGAACACATTCCCTTC
63 AT-GAATAGTCAT-ACTAATCCT-CATTC-TTTTCGGATTAGGCACCATA-AACACAGT--CTTC
* * * * * *
2845488 -C-TTAGGATACAAGACATTGATACTTTGGTCTCGCAAA
121 TCATAAGGATACACGATATTGATCCTTTGGTTTTGC-AA
* * * * * *
2845525 AAAAAGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTTCATCTCTTAAATATGGCAAACATG
1 GAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAAGACAAACATG
* *
2845590 AATAGTCATAATAATCC-CAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
66 AATAGTCATACTAATCCTC-ATTCTTTTC-GGATTAGGCACCATAAACACAGTCTTCTCATAAGG
* * *
2845654 ATACATGATATTGATCCTTTGGTTTCGTAA
129 ATACACGATATTGATCCTTTGGTTTTGCAA
* * * * * * *
2845684 GAAAGGC-TTTC-TTCCCCCTAATTTCTG-TAAAGTCTAAGTCCGTGC-CTTAAATGAGACAAAC
1 GAAAAGCTTTTCTTTCCACC--ATTTTTGATAAAATCAAAGTTCGT-CTCTTAAATAAGACAAAC
* ** * * * * *
2845745 ATGGATTCTAATAATGATCTTCATT-TATTTCGTGATTAGGCACTATAAACACA
63 ATGAATAGTCATACTAATCCTCATTCT-TTTCG-GATTAGGCACCATAAACACA
2845798 TTCACATTAG
Statistics
Matches: 1116, Mismatches: 319, Indels: 215
0.68 0.19 0.13
Matches are distributed among these distances:
155 2 0.00
156 6 0.01
157 113 0.10
158 339 0.30
159 508 0.46
160 127 0.11
161 21 0.02
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (158 bp):
GAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAAGACAAACATG
AATAGTCATACTAATCCTCATTCTTTTCGGATTAGGCACCATAAACACAGTCTTCTCATAAGGAT
ACACGATATTGATCCTTTGGTTTTGCAA
Found at i:2845003 original size:476 final size:475
Alignment explanation
Indices: 2844097--2845884 Score: 2522
Period size: 476 Copynumber: 3.8 Consensus size: 475
2844087 CCTATTTGAT
* *
2844097 GAAAAGCTTTTCTTTTCACCATTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
1 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * *
2844162 AATTGTCATACTAATCCCCATTCTATTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
66 AATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * *
2844227 TACACGATATTGATGCTTTGGTTTCGCAAAAAAAGCTTTTTTCCCACC-AATTTTTGAAAAGTCT
131 TACACGATATTGATCCTTTGGTTTCGCAAGAAAGGCTTTTTTCCC-CCTAATTTTTGAAAAGTCT
* * * *
2844291 AAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTCATTAG
195 AAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAG
* * ** * *
2844356 GCACTATAAACATGA-TCTGCTTGTTAGGATAAATGATATTGATGATTTTCTCTAACATGGAAAT
260 GCACTATAAACA-CATTCTACTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATAGAAAT
*
2844420 CTTTTCTTTGCCTAATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCT
324 CTTTTCTTTGCCTAATTTTCCTTAAAATCAAAGTTCATCTCTTGAAAAAGACAAGCATCGATTCT
* * *
2844485 CATGATAGTTTCCGCTCTTTTCAAGATTGGGAACTAAGAACACATTCCCTTCCTTAGGATATAAG
389 CATGATAGTCTCCGTTCTTTTCAAGATTGGGAACTAAGAACACATTCCCTTCCTTAGGATACAAG
2844550 ACATTGATGCTTTGGTCTCATAA
454 ACATTGATGCTTTGGTCTCA-AA
* *
2844573 GAAAAGCTTTTCATTCCACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
1 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * *
2844638 AATAGTCATACTAATCCTAATGCTTTTC-GCGAATAGGCACCATAAACATAGTCTTCTCATAAGG
66 AATAGTCATACTAATCCCAATTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCATAAGG
* *
2844702 ATACACGATATTGATCCTTTGGTTTTGCAAGAAAGGCTTTTTTCCCCCTAATTTTTGCAAAGTCT
130 ATACACGATATTGATCCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCCCTAATTTTTGAAAAGTCT
* * * * *
2844767 AAGTTCGTGCCTCAAATAAGACAAACATGAACTCTAGTAATGATCTTCATTCATTTTGTGATTAG
195 AAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAG
* * *
2844832 GCACTATAAACACATTCTACTCATTAGGATAAATGTTATTGATGATTTTCTCTAGCTTGGAAATC
260 GCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATAGAAATC
* *
2844897 TTTTCTTTACCCT-ATTTTCCTTAAAATCAAAGTTCATCTCTTAAAAAAGACAAGCATCGATTCT
325 TTTTCTTT-GCCTAATTTTCCTTAAAATCAAAGTTCATCTCTTGAAAAAGACAAGCATCGATTCT
* * * * * * *
2844961 TATAACAGTCTCCATTCTTTTCAAGATTAGGGACCT-AGAACACATTCCCTTCATTAGGATACAT
389 CATGATAGTCTCCGTTCTTTTCAAGATT-GGGAACTAAGAACACATTCCCTTCCTTAGGATACAA
2845025 GACATTGATGCTTTGGGGT-TGC-AA
453 GACATTGATGCTTT--GGTCT-CAAA
* * * * * *
2845049 TAAAGGCTTTTCTTTCAACTATTTTTAATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATG
1 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * *
2845114 AATAGTCATACTAATCCCTATTCTTTTCAGGATTAGACACCATAAACATAGTCTTCTTATAAGGA
66 AATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * *
2845179 TATACGATATTGA-CGCTTTGGTTTCACAA-AAAGGCTTTTTTCCCCCCAATTTTGGACAAGTCT
131 TACACGATATTGATC-CTTTGGTTTCGCAAGAAAGGCTTTTTTCCCCCTAATTTTTGAAAAGTCT
*
2845242 AAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCGTTCATTTCGTGATTAG
195 AAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAG
* ** * *
2845307 GCACTATAAACAGATTCCCCGCTTTAGGATAAATGATATTGATGATTTTCTCTAGCATAGAAATC
260 GCACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATAGAAATC
* * * *
2845372 TTTTCTTTGCCTAATTTTCCTTAAAATGAAAGTTCATCTCATGAAAGAGATAAGCATCGATTCTC
325 TTTTCTTTGCCTAATTTTCCTTAAAATCAAAGTTCATCTCTTGAAAAAGACAAGCATCGATTCTC
*
2845437 ATGATAGTCTCCGTTCTTTTTAAGATTGGGAACTAAGAACACATTCCCTTCCTTAGGATACAAGA
390 ATGATAGTCTCCGTTCTTTTCAAGATTGGGAACTAAGAACACATTCCCTTCCTTAGGATACAAGA
*
2845502 CATTGATACTTTGGTCTCGCAAA
455 CATTGATGCTTTGGTCT--CAAA
* * ** * *
2845525 AAAAAGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTTCATCTCTTAAATATGGCAAACATG
1 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* *
2845590 AATAGTCATAATAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
66 AATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * *
2845655 TACATGATATTGATCCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCCCTAATTTCTGTAAAGTCTA
131 TACACGATATTGATCCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCCCTAATTTTTGAAAAGTCTA
* * * * *
2845720 AGTCCGTGCCTTAAATGAGACAAACATGGATTCTAATAATGATCTTCATTTATTTCGTGATTAGG
196 AGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGG
* *
2845785 CACTATAAACACATTC-A--CATTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCT
261 CACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATAGAAATCT
* *
2845847 TTTCTTTAGCCT-ATTTTCCTAAAAATCAAAATTCATCT
326 TTTCTTT-GCCTAATTTTCCTTAAAATCAAAGTTCATCT
2845885 TGTAAATATT
Statistics
Matches: 1163, Mismatches: 131, Indels: 38
0.87 0.10 0.03
Matches are distributed among these distances:
473 3 0.00
474 82 0.07
475 273 0.23
476 686 0.59
477 115 0.10
478 4 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
AATAGTCATACTAATCCCAATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
TACACGATATTGATCCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCCCTAATTTTTGAAAAGTCTA
AGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGG
CACTATAAACACATTCTACTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATAGAAATCT
TTTCTTTGCCTAATTTTCCTTAAAATCAAAGTTCATCTCTTGAAAAAGACAAGCATCGATTCTCA
TGATAGTCTCCGTTCTTTTCAAGATTGGGAACTAAGAACACATTCCCTTCCTTAGGATACAAGAC
ATTGATGCTTTGGTCTCAAA
Found at i:2847443 original size:13 final size:13
Alignment explanation
Indices: 2847425--2847451 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2847415 AAAATTGTGC
2847425 ATGTATCGATACA
1 ATGTATCGATACA
2847438 ATGTATCGATACA
1 ATGTATCGATACA
2847451 A
1 A
2847452 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2849997 original size:13 final size:13
Alignment explanation
Indices: 2849974--2850092 Score: 64
Period size: 13 Copynumber: 10.1 Consensus size: 13
2849964 ATAGTAACCC
*
2849974 ATGTATTGATACA
1 ATGTATCGATACA
*
2849987 TTGTATCGATACA
1 ATGTATCGATACA
*
2850000 ATGCATCGATACA
1 ATGTATCGATACA
2850013 A---A--GA-ACA
1 ATGTATCGATACA
* * *
2850020 TTGTATTGATACG
1 ATGTATCGATACA
2850033 ATGTATCGATACA
1 ATGTATCGATACA
2850046 A---A--GA-ACA
1 ATGTATCGATACA
* *
2850053 TTGTATTGATACA
1 ATGTATCGATACA
*
2850066 TTGTATCGATACA
1 ATGTATCGATACA
*
2850079 ATGCATCGATACA
1 ATGTATCGATACA
2850092 A
1 A
2850093 AGAACATTGT
Statistics
Matches: 81, Mismatches: 13, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
7 6 0.07
8 4 0.05
10 4 0.05
12 4 0.05
13 63 0.78
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2850031 original size:33 final size:33
Alignment explanation
Indices: 2849984--2850079 Score: 156
Period size: 33 Copynumber: 2.9 Consensus size: 33
2849974 ATGTATTGAT
* *
2849984 ACATTGTATCGATACAATGCATCGATACAAAGA
1 ACATTGTATTGATACAATGTATCGATACAAAGA
*
2850017 ACATTGTATTGATACGATGTATCGATACAAAGA
1 ACATTGTATTGATACAATGTATCGATACAAAGA
*
2850050 ACATTGTATTGATACATTGTATCGATACAA
1 ACATTGTATTGATACAATGTATCGATACAA
2850080 TGCATCGATA
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 58 1.00
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.30
Consensus pattern (33 bp):
ACATTGTATTGATACAATGTATCGATACAAAGA
Found at i:2850063 original size:20 final size:20
Alignment explanation
Indices: 2850007--2850065 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
2849997 ACAATGCATC
2850007 GATACAAAGAACATTGTATT
1 GATACAAAGAACATTGTATT
*
2850027 GATAC---G---A-TGTATC
1 GATACAAAGAACATTGTATT
2850040 GATACAAAGAACATTGTATT
1 GATACAAAGAACATTGTATT
2850060 GATACA
1 GATACA
2850066 TTGTATCGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
13 10 0.33
14 1 0.03
16 1 0.03
17 1 0.03
19 1 0.03
20 16 0.53
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (20 bp):
GATACAAAGAACATTGTATT
Found at i:2850067 original size:46 final size:46
Alignment explanation
Indices: 2850017--2850125 Score: 166
Period size: 46 Copynumber: 2.4 Consensus size: 46
2850007 GATACAAAGA
* * *
2850017 ACATTGTATTGATACGATGTATCGATACAAAGAACATTGTATTGAT
1 ACATTGTATCGATACAATGCATCGATACAAAGAACATTGTATTGAT
2850063 ACATTGTATCGATACAATGCATCGATACAAAGAACATTGTATTGAT
1 ACATTGTATCGATACAATGCATCGATACAAAGAACATTGTATTGAT
*
2850109 ACGA-TGCATCGATACAA
1 AC-ATTGTATCGATACAA
2850126 AGAACATTGT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
46 57 0.98
47 1 0.02
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.30
Consensus pattern (46 bp):
ACATTGTATCGATACAATGCATCGATACAAAGAACATTGTATTGAT
Found at i:2850074 original size:79 final size:79
Alignment explanation
Indices: 2849975--2850145 Score: 324
Period size: 79 Copynumber: 2.2 Consensus size: 79
2849965 TAGTAACCCA
*
2849975 TGTATTGATACATTGTATCGATACAATGCATCGATACAAAGAACATTGTATTGATACGATGTATC
1 TGTATTGATACATTGTATCGATACAATGCATCGATACAAAGAACATTGTATTGATACGATGCATC
2850040 GATACAAAGAACAT
66 GATACAAAGAACAT
2850054 TGTATTGATACATTGTATCGATACAATGCATCGATACAAAGAACATTGTATTGATACGATGCATC
1 TGTATTGATACATTGTATCGATACAATGCATCGATACAAAGAACATTGTATTGATACGATGCATC
2850119 GATACAAAGAACAT
66 GATACAAAGAACAT
*
2850133 TGTATCGATACAT
1 TGTATTGATACAT
2850146 CTGGGTTTTT
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
79 90 1.00
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (79 bp):
TGTATTGATACATTGTATCGATACAATGCATCGATACAAAGAACATTGTATTGATACGATGCATC
GATACAAAGAACAT
Found at i:2850100 original size:33 final size:33
Alignment explanation
Indices: 2850063--2850144 Score: 146
Period size: 33 Copynumber: 2.5 Consensus size: 33
2850053 TTGTATTGAT
2850063 ACATTGTATCGATACAATGCATCGATACAAAGA
1 ACATTGTATCGATACAATGCATCGATACAAAGA
* *
2850096 ACATTGTATTGATACGATGCATCGATACAAAGA
1 ACATTGTATCGATACAATGCATCGATACAAAGA
2850129 ACATTGTATCGATACA
1 ACATTGTATCGATACA
2850145 TCTGGGTTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (33 bp):
ACATTGTATCGATACAATGCATCGATACAAAGA
Found at i:2850185 original size:20 final size:20
Alignment explanation
Indices: 2850160--2850213 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
2850150 GTTTTTCCAG
2850160 ATGTATCGATACATCTTTCA
1 ATGTATCGATACATCTTTCA
*
2850180 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATCTTTCA
* *
2850200 ATGCATCAATACAT
1 ATGTATCGATACAT
2850214 TTTGAAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATCTTTCA
Found at i:2856415 original size:20 final size:19
Alignment explanation
Indices: 2856386--2856438 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
2856376 ACCAGTTTCT
**
2856386 TGTATCGATACAATTGTACA
1 TGTATCGATACAATCAT-CA
*
2856406 TGTATTGATACAATCATCA
1 TGTATCGATACAATCATCA
2856425 TGTATCGATACAAT
1 TGTATCGATACAAT
2856439 ATATCAATGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
TGTATCGATACAATCATCA
Found at i:2861447 original size:28 final size:28
Alignment explanation
Indices: 2861386--2861441 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
2861376 TTGAGCTTCA
2861386 AAAATGCATGTTTATGTTCAGATCTGCG
1 AAAATGCATGTTTATGTTCAGATCTGCG
2861414 AAAATGCATGTTTATGTTCAGATCTGCG
1 AAAATGCATGTTTATGTTCAGATCTGCG
2861442 CCAATGTATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.36
Consensus pattern (28 bp):
AAAATGCATGTTTATGTTCAGATCTGCG
Found at i:2866058 original size:2 final size:2
Alignment explanation
Indices: 2866051--2866086 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
2866041 TTTTATAGAT
2866051 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2866087 ATTTATTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2866885 original size:2 final size:2
Alignment explanation
Indices: 2866878--2866902 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2866868 TTTATTTTAA
2866878 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2866903 GAGCTTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2867630 original size:21 final size:22
Alignment explanation
Indices: 2867581--2867646 Score: 61
Period size: 20 Copynumber: 3.2 Consensus size: 22
2867571 ATTTAAAAAG
*
2867581 TAATTTTATATTAATATTTATA
1 TAATTTTATATTAATATTTAAA
*
2867603 TATTTTTA-ATTAA-ATTTAAA
1 TAATTTTATATTAATATTTAAA
*
2867623 TAAATTTT-T-TTATTA-TTAAA
1 T-AATTTTATATTAATATTTAAA
2867643 TAAT
1 TAAT
2867647 AATTTAAATC
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
19 3 0.08
20 16 0.43
21 11 0.30
22 7 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
TAATTTTATATTAATATTTAAA
Found at i:2868984 original size:20 final size:20
Alignment explanation
Indices: 2868958--2869010 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
2868948 TAAAAAACAG
*
2868958 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* * *
2868978 CATGTATCAATACATTGAAA
1 AATGTATCGATACATTCAAA
2868998 AATGTATCGATAC
1 AATGTATCGATAC
2869011 CTATAGGTAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:2869022 original size:70 final size:70
Alignment explanation
Indices: 2868909--2869062 Score: 202
Period size: 70 Copynumber: 2.2 Consensus size: 70
2868899 TTTTAACTAG
*
2868909 ATGTATCGATACATTAAAAAATGTATCGTCACATCTAGGTAAAAAACAGAATGTATCGATACATT
1 ATGTATCGATACATTAAAAAATGTATCGTCACATATAGGTAAAAAACAGAATGTATCGATACATT
* *
2868974 CATAC
66 CAAAA
* * * * * *
2868979 ATGTATCAATACATTGAAAAATGTATCGAT-ACCTATAGGTAAAAGATAGAATGTATCGATATAT
1 ATGTATCGATACATTAAAAAATGTATCG-TCACATATAGGTAAAAAACAGAATGTATCGATACAT
*
2869043 TGAAAA
65 TCAAAA
2869049 ATGTATCGATACAT
1 ATGTATCGATACAT
2869063 CTGGGTAAAA
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
70 71 0.99
71 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.14, T:0.30
Consensus pattern (70 bp):
ATGTATCGATACATTAAAAAATGTATCGTCACATATAGGTAAAAAACAGAATGTATCGATACATT
CAAAA
Found at i:2871426 original size:475 final size:475
Alignment explanation
Indices: 2869612--2934713 Score: 45846
Period size: 475 Copynumber: 136.2 Consensus size: 475
2869602 AAGTTCAAAT
* * *
2869612 CTCAAATG-GAACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAA
1 CTCAAATGAG-ACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAA
* * * * * * * *
2869676 ATACATTCTCCTTATTAGGATAAATAATATTGATGACTTTCTTTAGCAT-AGAAACCATTTCTTT
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGA-AAATCTTTTCTTT
* * * * * *
2869740 GCCCTATTTTCCATAAAGTCAAAGTTAATCTCTTAAGAAAAAG--AAGCATCCATTCTCATGACA
129 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT--GAAAAAGACAAGCATCGATTCTCGTGACA
* * * *
2869803 GTCTCCACTCTTTTCAAGATTAGGAACCAAGAACACATTTCCTTAATTAAGATACATGACATTGA
192 GTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* *
2869868 CGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTT
257 TGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTT
* * * * * *
2869933 ACATAAGACCAACATGAATAGTCATACTAATCCCTATTTTTTTGAAGATTAGGCACCATAAACAT
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * ** * * *
2869998 AGTTTTCCCACAAGGATATACGATATTGACGCTTTGGTTTCGTGAGAAAGACTTTTTTCTCCCTA
387 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCCA
*
2870063 ATTTTTGAAAAGTTTAAGTTC--G-
451 ATTTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2870085 ------TGAGATAAACATGAATTCTAGTAATGATCTTCGTTCATTTCATGATTAGGCACAGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2870144 CATATTCTCTTCTTTAGGATAAATGATATTGATGATTTTCTCTAGCAT-AGAAATCTTTTCTTT-
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGA-AAATCTTTTCTTTG
* * * * *
2870207 CTCCTATTTTCCTTAAAATCAAAATTCATCCCCTT-AAATATGATAAGCATCGATTCTCATAACA
130 C-CCTATTTTCCTTAAAATCAAAGTTCAT-CCCTTGAAA-AAGACAAGCATCGATTCTCGTGACA
* * * * * *
2870271 GTCTCCAATCATTTCAAGATTAGGAACCAAGAACACATTCCCTTCACTAGGATACATGATAATGA
192 GTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * *
2870336 TGCTTTGCTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTATCTCTC
257 TGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTT
* ** *
2870401 AAATAAGACAAACATAAATAGTCATACTAATCCCCACCCTTTTTCAGGAGTAGGCACCATAAACA
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTC-TTTTCAGGATTAGGCACCATAAACA
* * *
2870466 TAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAAGCTTTCTTCTCACC
386 TAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCC
* * **
2870531 -ATTTTTCGTAAAGTCTAAATTAATGC
450 AATTTTT-GAAAAGTCTAAGTTCGTGC
* * * * *** *
2870557 CTCCAATGAGACAAACAAGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAGGCACCACAAT
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * *
2870622 CACATT---CACATTAGAATAAATGATATTGATAATTTTCTTTTGCATGGAAATCTTTTATTTAG
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTT-G
* * * ** * * * *
2870684 -CCTATTTTCCTAAAAATCAAAATTCATCCCGT-AAATATTACAAGTATCCACTCTCATGACAGT
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAA-AAGACAAGCATCGATTCTCGTGACAGT
* * * * * *
2870747 CTCTACTCTATTCAAGATTTGGAAGCAAGAGCACATTCCCTTCATTAAGATACATGACATTGATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * ** * * ** *
2870812 CTTTGTTGTCACAATAAAAGC-TTTATTTCCATTGTTTTTTATAAAATCAAAGTTTGTTTCTCAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * *
2870876 ATAAGACAAACAAGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTAGGCATCATAAACACAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* *
2870941 TCTTCTCATAAGGATGCACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAAT
* * * *
2871006 TTTTGCAACGTCTATGTTTGTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * ** *
2871029 CACAAATGAGATAAACAAGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * *
2871094 CACATTCTCTTCATTTGGATAAAT-ATTATTAATGATTTTCTTTTGCATGAAAATCCTTTCTTTG
66 CACATTCCCCTCATTAGGATAAATGA-TATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * *
2871158 CCCTATTTTCCTTAAAATCAAAATTCATCCCCTT-AAATATGACAAGCATCGATTCTCATAACAG
130 CCCTATTTTCCTTAAAATCAAAGTTCAT-CCCTTGAAA-AAGACAAGCATCGATTCTCGTGACAG
* * * * * * * * *
2871222 TCTCTA-TTTTTTTAGGATTAGGAACCAAGAACACATTCCCTTCACTA-GCTGCGTGACATTGAT
193 TCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * **
2871285 GCTTTGTTGTCGTAATAAAAACTTTTCTTTCCACCATTTTTGATAGAATTAAAGTTTGTCTCTCG
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* ** * * * *
2871350 AATAAGACAAACATGAATAGTCATAGTAATCCTGATTCTTTTTAGGACTGGGCACCATAAAAATA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * **
2871415 GTCTTCTCATAAGAATACACGATATTGACACTTTGGTTTCGCATGAAAAGCTTTCTTCCTACAAT
388 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAAT
* * *
2871480 TTTTCGTAAAGTCTAAGTTCATGA
453 TTTT-GAAAAGTCTAAGTTCGTGC
* * * * ** *
2871504 CTCAAATGAGACAAATAAGGATTCTAGTAATGATCTTTATTCTTTTTATGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * * *
2871569 CACAAT---CTTATTAGGATAAGTGATTTTGATGATTTTTTTTTGCACGAAAAT-TTTT-TTTAG
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTT-G
* * * * * *
2871629 -CCTATTTTCCTAAAAATCAAAATTTATTCCGT-AAATAAGACAAGTATCGATTCTCGTGACAGT
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAA-AAGACAAGCATCGATTCTCGTGACAGT
* * * * *
2871692 CTCCACTTTTTTTAAGATTTGGAACCAAGAACACATTCCTTTCATTAGGATACATAACATTGATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * *
2871757 CTTTGGTGGCACAATAAAATCTTTTCTTTCCACCGTTTTTGATAGAAACCAAGTTTGACACTTAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * **
2871822 ATAAGACAAACATGGATAGTCACACTAAT-CCCATTTTTTTCAGGATTAGGCACTGTAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * * *
2871886 -CTTTCTCATAAGGATACACAATATTAACGCTTTGGTTTTGCAAGAAACGTTTTCTACCACCTAA
389 TC-TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-CCCAA
*
2871950 TTTTTGAAAAGTTTAAGTTCGTG-
452 TTTTTGAAAAGTCTAAGTTCGTGC
* *
2871973 CTCAAATGAGATAAACATGGATTCTAGTAATGATCTTCATTTATTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* *
2872038 CACATTCCCTTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTTC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * * *
2872103 CTTGTTTGCCTTAAAATCAAAGTTCATCCCCTGAAAAAAAACAAGCATTGATTCTGGTGAGAGTC
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTG-AAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2872168 TCCACTC-TTTCAAGATT-GGAACCAAGAACACATTCCCTTCATTAGGATAGATTACATTAATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * *
2872231 TTTGGTGTCAC-ATGAAAAGCTTTTCTTTACACTGTTTATGATAGAATCAAAGTTTGACACCTAA
260 TTTGGTGTCGCAAT-AAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * *
2872295 ATAAGACAAACATTAATAGTCATACTAATCCTCATTCCTTTCAGGATTAGGCACCATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * *
2872360 TTTTCTCATAAAGATATACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCCCTTAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AAT
* **
2872425 TTTTGAAAAGTCTAAGCTCAAGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * *
2872448 CTCAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCATTTCTTGATAAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* *
2872513 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTTTCTAGCATGAAAATCTTTTCTTTTC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * *
2872578 CCTATTTTCTTTGAAACCAAAGTTCATCCCTCGAAAAAGGCAAGAATCGATTCTCGTGACAATCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * * * *
2872643 CCACTCTTTTCAAGATTGGGAACTAGGAACACATTCCTTTCGTTAGGATACATGACATTCATGCC
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
2872708 TTGGTGTCACAATAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2872773 AAGACAAACATGAATAGTCATACTAATCCCCAATCTTTTAAGGATCAAGCACCATAAACATTA-T
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA-TAGT
* **
2872837 CTTCTCATAAGGATACACGATATTGACACTTTGGTACCGCAAGAAAGGCTTTCTTCCCCCCAATT
390 CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAATT
* * * *
2872902 TTTGGAAAGTGTAAGTTCCTAC
454 TTTGAAAAGTCTAAGTTCGTGC
** * *
2872924 CTCAAATGAGATGAACATGGATTCTAGTAATAATTTTCATTCATTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2872989 CACATTCCCCTCATTAGGATAAATAATATTGATGATTCTT-TCTAGTATGGAAATCTTTTCTTTA
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATT-TTCTCTAGCATGAAAATCTTTTCTTTG
* * * *
2873053 CCCTATTTTCCTTAAAATCAAAATTCATCTCTTAAAAAAGACAAGCATCGATTCTCGTGACAATC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
*
2873118 TCCACTCTTTTCAAGATTGGGAACTAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * *
2873183 TTTGGTG-CTGGAA-AAAAGGCTTTTCTTTCAACCGCTTTTGATAGAATCAAAGTTTGTCTCTCA
260 TTTGGTGTC-GCAATAAAA-GCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* * * *
2873246 AATAAGACAAACATTAATGGTCATACTAATCCCCATTGTTTTCAGGATTAGTCACCATAAACACT
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA-T
* * *
2873311 -GTCTTCTCATAAGGATACACGATATTGACGCTTTGGATTCACAAGAAAGGCATTCTTCCCCTCA
387 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCC-CA
* * *
2873375 ATTTTCGAAAAGTATAAGTTCCTAG-
451 ATTTTTGAAAAGTCTAAGTTCGT-GC
* *
2873400 CTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCGTTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * ** *
2873465 CACATTCCCCTCATGAGGATAAATAATATTGATGTTTTTCTCTAGCATGGAAATAATTTATTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2873530 CCTATTTTTCTTAAAATCAAAGTTCATCCCTTG-AAAAGATAAGCATTGATTCTCATGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * *
2873594 CTACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTACATTAGGATACATGACACTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * *
2873659 TTGGTGTCGCAATAAAAGCTTTCCTTTCTATCATTTTTGATAGAATCAAAGTTTGACACTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2873724 AAGACAAACATGGATAGTCATACTAAT-CCCATTCTTTTTAGGATTAGGCACCGTAAACATAGTT
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * ** *
2873788 TTCTCTTAAGGATATACGATATTAACGCTTTGGTTTCGCAAGAAAGGC--T-TTCCCTAAAATTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAATTTT
2873850 TG-AAAGTCTAAGTTCGTGC
456 TGAAAAGTCTAAGTTCGTGC
* * * *
2873869 CTCAAATGTGACAAACATGGATTCTAGTAATGATCTTCATTTATTTCGT-ACTTAGACACTATAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGA-TTAGGCACTGTAA
* * * * * *
2873933 ACACATTCCCCTCGTTAGGATAAATGATATTGGTAATTTTCTCCCA-CGTGAAAGTCTTTTCTTT
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCT-CTAGCATGAAAATCTTTTCTTT
* * *
2873997 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGTATTGATTCTTGTGACAGT
129 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGT
**
2874062 CTCTGCTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATTG-CATTGAT
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACA-TGACATTGAT
* * * * * *
2874126 GCTTAGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAACCAAAGTTTGACACTTA
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* * * *
2874191 AATAAGACAAACATGAATAGTCATACTAATCCTCATTCCTTTCAAGATTAGGCACTATAAACATA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* ** * * * * *
2874256 GTGTTCTCATAAGGATTTACGATATTGGCACTTCT-GTTAACCCAAGAAAGGTTTTCTTCCCACC
388 GTCTTCTCATAAGGATACACGATATTGACGCTT-TGGTT-TCGCAAGAAAGGCTTTCTTCCC-CC
* *
2874320 AATTTTTGAAAAGTCTAAGTTCATGA
450 AATTTTTGAAAAGTCTAAGTTCGTGC
* * *
2874346 CTCAAATGAGACAAACTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2874411 CATATTCTCCTCATTAGGATAAAAGATATTGATGATTTTCACTAGCATGGAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * **
2874476 CCTATTTTGCTTAAAATCAAAG-TCTATCCCTTGGAAAAGGCAAGCTTCCATTCTCGTGACAACC
131 CCTATTTTCCTTAAAATCAAAGTTC-ATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * **
2874540 TCCACTATTTTCAAGGTTGGGAACCAAGAACACTTTCCCTTCCCTAGGATACATGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* ** * *
2874605 TTGGGTGTCATAATAAAAGCTTTTCTTTGCACCGTTTTTGGTAGAATCAAAGTTTGTCACTTAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * * *
2874670 TAAGACAAACATGAATAGACATAGTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACTTTGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * *
2874735 TTTCTCATAAGGACACATGATATTGACCCTTTGGTATCGCAAGAAAGGCTTTCTTCCCCCCAATT
390 CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAATT
* ***
2874800 TTTAAAAAGTCTAAGTTTAAGC
454 TTTGAAAAGTCTAAGTTCGTGC
* * * * * * *
2874822 CTCAAATGACACAAACATTGACTCTAGTAATGATCTTCATTCCTTTCATGATGAGGCATTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * *
2874887 CACATTCCCTTCATTAGGATAAATGATATTGATGATTTTCTCTAGCTTGAAAATCTTTTCTTTTC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * *
2874952 CCTATTTTTCTTAAAATCAAAGTTCAT-CCTTGAAAAAGACAAGCACCAATTCTCGTGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * * * *
2875016 TCATTTTTTTCAAGATTGGGAACTAAGAGCACATTCCCTTCATTAGGATACATGACGTTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* ** * * * ** *
2875081 TTGGTGTTGCAATAATGGCTTTTCTTTCAACC-TTTTTGATAAAATCAAAGTTTCTTTCTTAAAC
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * * *
2875145 AAAACAAACATTAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCACAAACATAGCC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * *
2875210 TTCTCATAAGGATAAACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTT-TTGGCCCTCAATT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT--CCCCCAATT
2875274 TTTGAAAAGTCTAAGTTCGTGC
454 TTTGAAAAGTCTAAGTTCGTGC
* * * * * * *
2875296 CTCAAAGGAGACAAACATAGATTCTAGTAATTATCTTCATTCATTTTGTGACTGGGCACGGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2875361 CACATTCCCCTCATTAGGATAACTGATATTGAGGTTTTTCT-TCGGCATTG-AAATCTTATT-TT
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCT-AGCA-TGAAAATCTT-TTCTT
* * * * *
2875423 TACCTTATTTTCCCTAGAATCAAAGTTCATCCCTTGAAAACA-ACAAGCATCGATTCTGGTGACA
128 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAA-AGACAAGCATCGATTCTCGTGACA
* * * * * * *
2875487 ATCTCCACTCTTTTCAAGATTGGGAACCAGGAACACATTCCCTTCACTAAGATATATGGCATTAA
192 GTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * *
2875552 TGCTTTGGGGTCGCAATATTAATGCTTGGGGGTCGCAATAAAGCTTTTCTTCCCATCATTTTTGG
257 TGCTTTGGTGTCGC------AA----------T----A-AAAGCTTTTCTTTCCACCGTTTTTGA
* * *
2875617 TAGAATCAAAGTTTGACACTTAAATAAGACAAACATGAATAGTCAAACTAATCCCAATTCCTTTT
301 TAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT-CTTTT
* * * * * * *
2875682 -AGGATTAGGCACCATGAACGTAGTTTTTTCATAAGGGTACATGATATTGATGCTTTGGTTTCGC
365 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGC
* * * *
2875746 AAGAAAGGCTTTTTTCCCCCTAATTTTTGAAAAGTCTAAGCTCCTAC
430 AAGAAAGGCTTTCTTCCCCC-AATTTTTGAAAAGTCTAAGTTCGTGC
* * *
2875793 TTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTC--G--T--G-ACTTTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * * *
2875851 CACATTCCCCTCATTAGGACAAAT-ATTATTGATGATTTTCACTTGCTTGGAAATCATTTATTTC
66 CACATTCCCCTCATTAGGATAAATGA-TATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * *
2875915 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACAAGCATTGATTCTCATGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* *
2875980 TCCACTCTTTTCAAGATTAGGAACCAAGGACACATTCCCTTCATTAGGATACATGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * **
2876045 TTTGATGTCGTAATAAAACCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGAAACTTAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * *
2876110 TAAGACAAACATGGATAGTCGTACTAAT-CCCATTCTTTTCAGGATTAGGCACCGTAAACATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG-
* * * * * * **
2876174 TTTTTTTATAAGGATATACAATATTGACGCTTTGGTTTCGCAAGAAAGGTTTTCTTGCCCTTAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAAT
* *
2876239 TTTTG-AAAGCCTAAGTTCGAGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * * *
2876261 CTCAATTGAGACAAACATGGATTCTAGCAATGATTTTCGTTTATTTCATGATTAAGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
*
2876326 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCAATGAAAATATTTTCTTTG
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGC-ATGAAAATCTTTTCTTTG
* * * *
2876391 CCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAAAAAGATAAGAATCGATTCTCGTGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2876456 TCCACTCTTTCCAAAATTGAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
2876521 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCAAAGTTTGACACTTAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * *
2876586 TAAGACAAACATGAATAGTCATACTAATCCCCATTTTTTTTAAGATTAGGCACCATAAACATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * * *
2876651 TTTCTCATAAGGATTCAAGATATTGACGCTTTGGTTTCGCAACAAAGGATTTTTTCCCACCAATT
390 CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAATT
* * *
2876716 TTTGAAATGCCTAAGTTCGTGA
454 TTTGAAAAGTCTAAGTTCGTGC
* * * * * *
2876738 CTCAAATGAGACAAACTTGGATTCTAGTATTGATCTTTATTCATTTTGGGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
** * * * * *
2876803 CACATTTTCCTCATTAGGATAAAGGATATTGATGATTTTCTCTAGCGTGGAAATCGTTCCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2876868 CCTATTTTGCTT-AAATCAAAGTTCAACCCTTGAAAAAGATAAGCATCGATTCTCATGACCA-TC
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGA-CAGTC
* * * * * * * *
2876931 TCCACTATTTTCAAGATTAGGAGCCAAGAACACTTTTCCTTCACTAGGATACAAGACTTTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* *
2876996 TTTGGTGTTGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAATTTGTCACTTAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * * * *
2877061 TAATACAAACATGAATAGTCATAGTAATCCCTATT-TCTTTCAGTATTAGGCACTATAAACATTG
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAG
* * *
2877125 TCTTCTCATAAGGATACACGATATTGATGCTTTGGTGTCGCAAGAAAGGCTTTCTTCCCGCAATT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAATT
* *
2877190 TTTGAAAAGCCTAAGTT-TTAGC
454 TTTGAAAAGTCTAAGTTCGT-GC
* * *
2877212 CTCAAATGAGACAAAAATGGATTCTAGTAATGATCTTCATTCATTTCATGATAAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* *
2877277 CACATTCTCCTCATTAGGATAAGA-GATATTGATGATTTTCTCTAGCATGAAAATATTTTCTTTG
66 CACATTCCCCTCATTAGGATAA-ATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * *
2877341 CCCTATTTTCTTTAAAATCAAAGTACA-CTCTTTGAAAAAGACAAGAATCGATTCTCGTGACAGT
130 CCCTATTTTCCTTAAAATCAAAGTTCATC-CCTTGAAAAAGACAAGCATCGATTCTCGTGACAGT
* * *
2877405 CTCCACTCTTTTTCAAGATTTGGAACCAAGAACACATTTCTTTCATTAGGATACATGACATTGAT
194 CTCCACTC-TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* ** * * * *
2877470 GCTTTGGTGACATAATAAAATCTTTTCTTTCCACCGTTTTTGATAGAAACCAAGTTTGACACTTA
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* * * **
2877535 AATGAGACAAACATGGATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACTGTAAACATA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * *
2877600 G-CTTTCTCATAAGGATACACAATATTGACGCTTTGGTTTTGCAAGAAATGATTTCTACCCCCTA
388 GTC-TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-A
2877664 ATTTTTGAAAAGTCTAAGTTCGTGC
451 ATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2877689 CCCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTTATTGCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * *
2877754 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGTATAAAAATCTTTTCTTTTC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * *
2877819 CCTATTTTCCTTAAAATCAAAGTTCATCCATTGAAAAAGATAAGAATCGATTCACGTGATAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * *
2877884 CCACACTTTTCAAGATTTGGAACCAAGAACACATTCCCTTTATTAGGATACATGACATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
2877949 TTGGTGTCGCAATAAAAGCTTTTCTTCCCATCATTTTTGATAGAATAAAAGTTTATC-TTTCAAA
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTT-AAA
* * ** *
2878013 TATGACAAACATGAATAGTCATAGTAATCCCCATTCTTTTCAATATTACGCACCATAAACATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * *
2878078 CTTCTTATAAGGATACACGATATTGACGTTTTGCTTCCGTAAGAAAGGCTTTCTTCCCCCTAATT
390 CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AATT
* * *
2878143 TTTGGAAAGTCTAAGTTCCTAC
454 TTTGAAAAGTCTAAGTTCGTGC
* ** *
2878165 CTCAAATGAGACGAACATGGATTCTAGTAATGATCTTCATTCATTTAATGATTAGGCATTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
** * * * * *
2878230 CACATTCTGCTCATTAGGGTAAATAATATTGATGATTCTCTCTAGCATGGAAATCTTCTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * *
2878295 CTTATTTTTCTTAAAATAAAAGTTCATCCATTGAAAACA-ACAAGCATCGATTCTAGTGACAGTC
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAA-AGACAAGCATCGATTCTCGTGACAGTC
* * * * *
2878359 TCCATTCTTTTCAAGATTAGAAACCAAGAACATATTCCCTTTATTAGGATACATGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * *
2878424 TTTGGTGTCGCAATAAAAGCTTTTC-TTCTCATCGTTTTTGATAGAATCAAAGTTTGTCTCTGAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTC-CACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * * **
2878488 ATAAAACAAACATGAATAGTCATAGTAATCCCTATTCTTTTTAGGATTACACACCATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * *
2878553 TCTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGCTTTATTCCCACCAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAAT
*
2878618 TTTTGAAAAGTATAAGTTCGTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * ** * * * * *
2878641 CTCAAATGAGACAAACTTTGATTCTAGTAATGATCTTCATTTGTTTTGTGATTACGCATTATTAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * *
2878706 CACAATCTCCTCATTAGGATAAAGGATATTAATGATTTTCTCTAGCATGGAAATCATTTT-TCTC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATC-TTTTCTTTG
* * *
2878770 CCCTATTTTCCTTAAAATCAAAGTTCTTCCCTTGAAAAAGACAAGCATCGATTCTTGTAACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * ** * * * * *
2878835 TCCACTTTTTTCAAGATTGAGAAGTAAGAACACATTCTCTTCATCAGGATACAAGACATCGACGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * *
2878900 TTTGGTGTCGTAATAAAAGCTTTT-TTTCCATCATTCTTT-CTAGAATCAAAGTTTATCTCTCAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTT-TTTGATAGAATCAAAGTTTGTCACTTAA
* * * **
2878963 ATAAGACAAACATGAATAGTCATACTAATCCCTATTCTTTTGATGATTAACCACCATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * *
2879028 TCTTCTCATAAGGATATATGATATTGACGCTTTGGTTTCGCAAGAAAGTCTTTGTTCCCCCCAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAAT
2879093 TTTTGAAAAGTCTAAG-TCTGTGC
453 TTTTGAAAAGTCTAAGTTC-GTGC
* * * *
2879116 CTCAAAGGAGACAAACGTGGATTCTAGTAATGATCTTCGTTCATTTCATGATTAGGCA-TAGTAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACT-GTAA
** * * * * * *
2879180 ACACATTCGACTCTTTAGGACAAATAATATTGATGATTTTCTCGAGCATAAAAATCTTTTCTTAG
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * ** * *
2879245 CCCTGTTTACCTTAAAATCAGAGTTTATCTATTGATAAAGACAAGCATCGATTGCT-GAGACAGT
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATT-CTCGTGACAGT
* * * *
2879309 CTCCACTTTTTTCAAGATTGAGAACCAAGAACACATTCCCTTCATTAGGATACAAGAAATTGATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* ** * * * *
2879374 CTTTGGTGTCACAGGAAAAACTTTTCTTTCCACCGTTTTTTATAAAATCAAAGTTTGACACTTAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * *
2879439 ATAAGACAAACATTAATAGTCATACTAATCCTCATTCTTTTCAAGATTAGGCACCATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * *
2879504 TTTTCTTAT-AGGCAAATACGATATTGACACTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTCCAA
389 TCTTCTCATAAGG-ATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAA
*
2879568 TTTTTGAAAAGTCTAAGTTCGAGC
452 TTTTTGAAAAGTCTAAGTTCGTGC
* * ** * *
2879592 CTTAAATGAGACAAACATGGATTCTAGAAACAATCTTCATTCATTTCATGATGAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* *
2879657 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTT-TCTAGCATGGAAATCTTTTCTTTTC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * *
2879721 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAGGAGAAGAATCGATTCTCATGACAATCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2879786 CCACTCTTTCCAAGATTGGGAACCAGGAACACATTCGCTTCATTAGGATACATGACATTCATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * *
2879851 TTGGTGTCGCAATAAAGGCTTTTCTTTCAACAGTTTTTGATAGAATCAAAGTTTGTC-TTTCGAA
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTT-AAA
* * *
2879915 TAAGACAAATATGAATAGTCATACTAATCCCCATTCTTTTCAGTATTAGGCACCATAAACATTGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * * * * * *
2879980 CTTCTTATAAGGATACACAATGTTAATGCTCTGGTATCGCAAGAAAGGCTTTCTTCCTTCTAATT
390 CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-CCCAATT
* *
2880045 TTTGGAAAGTCTAAGTTCTTGC
454 TTTGAAAAGTCTAAGTTCGTGC
* * * *
2880067 CTAAAATGAGACGAACATGGATTCTTGTAATGATCTTCATTCATTTCGTGATTAGGCATTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * * *
2880132 CACATTCCCTTCATTCGGATAAATAATATTGATGATTCTCTCTAGTATGGAAATGTTTTCTTTGG
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * *
2880197 CATATTTTCTTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCCTCGATTGTCATGACAGTTT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
*
2880262 CCACTCTTTTCAAGTTTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * *
2880327 TTGGTGTTGCAATAAAGGATTTTCTTTCAATCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2880392 AAGACAAACATTAATCGTCATACTAGTCCCCATTCTTTTCAGGACTAGGCACCATAAACATAGTC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * *
2880457 TTCTCACAAGGATACACGATATTGACGCTTTGGTTTTGCAAGAAAGGCTTTGTTTCTCCTAATTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTT-CTTCCCCCAATTT
* *
2880522 TTGCAAAGTTTAAGTTCGTGC
455 TTGAAAAGTCTAAGTTCGTGC
* * * *
2880543 CTTAAATGAGACAAACATGG-TTCTTGTAATTATCTTCATTCATTTTAG-GATTAGGCACTGTAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA-TTTCGTGATTAGGCACTGTAA
* * * * *
2880606 ACACATTCCCCCCATTAGGATAACTGATATTGATG-TCTTTCTCTATCATGGAAATCTTTTTTTT
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGAT-TTTCTCTAGCATGAAAATCTTTTCTTT
* * * * * *
2880670 ACCCTATTTTCCTTAAAAGCAAAGTTCATCCCTTTAAAACGATAAGCATCGATTCTGGTGACAGT
129 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGT
* * * * *
2880735 CTCCACTCTTTTTAAGATTGGGAACCAAAAACACATTCCCTTCATTAAGATACATAACATTAATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * *
2880800 CTTTGGTGTCGCAATAAAAGCTTTTC-TTCCTATCGTTTTTGGTAGAATCAAAGTTTGACAATTA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCC-ACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* * ** * * ***
2880864 AATAAGGA-AAACATGAACAATCATACTAATCCCCA-TC-AATAAGGA-TA--CACGATATTGAT
323 AATAA-GACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * ** * * * * * *** * * * *
2880923 -GCTTTGGTTTCGCAA-GA-A-AGGCT-TTCTACCCCCTAATTTTTGAAAAGTCTAA-GC-TCCT
387 AG-TCT--TCTCATAAGGATACACGATATT-GA-CGCTTTGGTTTCG-CAAG--AAAGGCTTTCT
* * * *** * ** *
2880981 ACCTCAAATGAGATGAACA-T-GGA-TTCGAG-
444 TCCCCCAAT-TTTTGAAAAGTCTAAGTTCGTGC
* ** ** * ** **
2881010 -T--AATGA-TC-TTCATTCATT-TCG---TG--CTT-AGGCA---C-T--TTAAACACAT-T--
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCAC-TGTAA
* * * * * * * *
2881054 -C-C---CCTCATTA-G--GATAAATAATATTGATTATTTTCTCTAGCATGGAAATCATTTATTT
65 ACACATTCC-CCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTT
* *
2881111 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGA-AAGCATTGATTCTTGTGACAGT
129 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGT
* * * *
2881175 CTGCACTCTTTTCAAGATTTGGAACCAA-AGCCACATTCCCTTCCTTAGGATACATGACATTGAT
194 CTCCACTCTTTTCAAGATTGGGAACCAAGA-ACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * *
2881239 GCTTTGATGCCACAATAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGACACTTA
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* * * ** * *
2881304 AATAAGACAAACATGGATACTCGTACTAAT-CTTATTCTTTGT-AGGATTAGGCATCGTAAACAT
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT-TCAGGATTAGGCACCATAAACAT
* * * * ** * *
2881367 AGTTTTCTCATAAGGACATATGATATTGATACTTTGGTTTCACAAGAAAGGCTATT-GTCCGCCC
387 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCT-TTCTTCC-CCC
* *
2881431 AATATTTG-AAAGTCAAAGTTCGTGC
450 AATTTTTGAAAAGTCTAAGTTCGTGC
* * * **
2881456 CTCAAATGAGACAAATATGGATTCTACTAATGATCTTCATTTATTTCGTGATTAGGCACTACAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * *
2881521 CACATTCCCCTCATTAGGATAAA-GACATTGATGATTTTCTCTAGCATGGAAATCGTTCCCTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * *
2881585 CCTATTTTGCTT-AAATCAAAGTTCATCCATTGAAGAAGACAAGCATAGATTCTCATGATAGTCC
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * * * * ** ** *
2881649 CCACTATTTTGAAGATTGGAAACCAAGAATACTTTCTCTTCCCTAAAATACATGATATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * *
2881714 TTGGTGTCACAATAAAAGCTTTTTTTTTCCACCATTTTTGATAGAATCAAAATTTTTCACTTAAA
261 TTGGTGTCGCAATAAAAGC-TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * *
2881779 TAAGACAAACATGAATAGTCCTAGC-AATCCCTATTCTTTTCAAGATTAGGCACCATAAACATTG
325 TAAGACAAACATGAATAGTCATA-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * *
2881843 TCTTCACATAAGGATACATGATATTGATGCTTTGGTATCACAAGAAAGGCTTTCTTCCCCCTAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AAT
* *
2881908 TTTTGAAAAGTCTAAGTTTGAGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2881931 CTCAAATGGGACAAACTTGGATTCTAGTAATGATCTTCATTCATTTCATGATGAGGCACTGAAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2881996 CATAATCCCATCATTAGGATAAATGATATTGACGATTTTCTCTAGCATGGAAATCTTTTCTTTTC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2882061 CCTATTTTTCTTAAAATCAAAGTTCATCCCCTGAAAAAGACAAGAATCGATTCTCGTGACAATCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * * * * *
2882126 CCACACTTTTCAAGATTGGGAACCAAGACCACATTCCCTTCATTAAGACACACGACTTTAATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * *** * * *
2882191 TTGGTGTCGCAGTAAAGGCTTTT-TTTTTTCCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAAC
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* *
2882255 AAGAAAAACATTAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * *
2882320 TTTTCATAAGGATACACGATATTGACGCTTTGGTTTCACAAGAAAGACTTTCTTCCCCCCAATTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAATTT
* *
2882385 TTGAAAAGTCTAACTTCTTGC
455 TTGAAAAGTCTAAGTTCGTGC
* * * * * *
2882406 CTCAAATGAGACGAACATTGATTCTAGTAATGTTCTTCATTAATTTCGAGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* ** *
2882471 CACATTCTCCTCATTAGGATAAAT-ATTATTGATGATTTTCTCTAGTGTGGAAATCTTTTCTTTG
66 CACATTCCCCTCATTAGGATAAATGA-TATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* *** * * * * * *
2882535 GCCTGCCTTCCATAAAATCAAAGTTCTTCCGTTGAAAAAGATATGCATCGATTCTCGTGATAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * *
2882600 TCCACTATTTTCAAGAATAGGAACCACA-AACACATTTCCTTCATTAGGATACATGACATTGATG
195 TCCACTCTTTTCAAGATTGGGAACCA-AGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * ** * *
2882664 CTTTGTTGTCGCATTAAAAGCTTTTCTTCCCATTGTTTCT-AGTAGAATCAAAGTTTGGCACTTA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGA-TAGAATCAAAGTTTGTCACTTA
* * * * *
2882728 AATAAGAAAAACATGAATAGTTATACTAATCCTCATTATTTTCAAGATTAGGCACCATAAACATA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * *
2882793 GTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTACGCAAGAAAGGCTTTTTTACCCCCAA
388 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAA
* * *
2882858 TTTTTGACAAGTCCAAGTTCTTGC
452 TTTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * * *
2882882 CTCAAATGACACGAATATGGATTCTAGTATTGTTCTTCAGTCATTTTGTGATTGGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * ** *
2882947 CACATTCCCTTCGTTAGGATAAATAATATTGATGATTTTCTCTAGTGTGGAAATCTTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2883012 TCTATTTTCCTTAAAATCAATGTTCATCCCTTGAAAAAGATAAGCATCGATTCTCATGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2883077 CCATTCTTTACAAGATTGGGAACCAAGAACGCATTCCCTTCATTAAGATACATGACATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * ** * * *
2883142 TTGGTGTTGCAATTAAAGCTTTTCTTCCCATTGTTTCT-AGTAGAATCAAAGTTTGGCTCTTAAA
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGA-TAGAATCAAAGTTTGTCACTTAAA
* * * * * * *
2883206 TAAGACAAACATGAGTAGTCTTACTAATCTCCAATATTTTCTA-GATTA-GTACCACAAACATAG
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAG
* * ** *
2883269 TCTTCGT-AGAATGATACACGATATTGAAACTTTGGTTTCGCAAGAAGGGCTTTCTTCCCCCAAT
389 TCTTC-TCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAAT
**
2883333 TTTTGAAAAGTCTAAGTTTATGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * **
2883356 CTCAAATGAGACAAACTTTGATTCTAGTAATGATCTTCATTTATTTCGTAATTAGGCACTACAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2883421 CACATTTCCCTCATTAGGATAAATGATATTAATGATTTTCTTTAGAATGAAAATATTTTATTT-C
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2883485 TCTATTTTCCTTAAAATCAAAGTTCAACCCTTGAAAAAGATAAGCATCGATTCTCATGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2883550 CCACTCTTTTCAAGATTGTGAACCATA-AACACATTCCCTTCAATAGGATACAAGACATTAATGC
196 CCACTCTTTTCAAGATTGGGAACCA-AGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * *
2883614 TTTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATGGAATTAAAGTTTGAT-ACTTAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG-TCACTTAA
* * * *
2883678 ATAAGACAAAGATGAATAGTCATACGAATCCCCTTTCCTTTCAGGATTAGGCACCATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * * * *
2883743 TTTTCTTATAAGGATATACGATATTGATGTTTTTGTTTC-CTAAGAACGGCTTTCTTCGCACCAA
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGC-AAGAAAGGCTTTCTTC-CCCCAA
* *
2883807 TTTTCGAAAAGTCTAAGTTCCTGC
452 TTTTTGAAAAGTCTAAGTTCGTGC
* * *
2883831 CTCAAATAAGACGAACATGGATTCTAGTAATGTTCTTCATTCATTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2883896 CAAATTCGCCTCATTAGGATAAA-GAATATTGATGATTTTCTCCAGCTTGGAAATCGTTTCTTTG
66 CACATTCCCCTCATTAGGATAAATG-ATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * ** * ** ** *
2883960 TCCTGTTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGGTAAGCGTAAATTCTCAAGATAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * * *
2884025 TCCACTCTTTTCAAGATTGGG-ACCAAGAACGCATTCTCTTTAATAGGATACAGGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * **
2884089 TTTGGGGTTGCAATAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTACCACTTAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * * * *
2884154 TAAGATAAACATGAAAAGTCAAACTAATCCCCATTCTTTTCAAGATTAGGCACAATAAATATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* ** * ** * * * *
2884219 CTTCTTATAAGGGCACACGATATTGAC-ATTATCTTTTCGCAAGAAAGACTTTTTTCACACTAAT
390 CTTCTCATAAGGATACACGATATTGACGCTT-TGGTTTCGCAAGAAAGGCTTTCTTC-CCCCAAT
* * *
2884283 TTTTGCAAAGTCTATGTTCGTAC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * * *
2884306 CACATATCAGATAAGA-ATTGATTCTAGTAATAATCATCCTTCATTTCGTGATTAGGCACTATAA
1 CTCAAATGAGACAA-ACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAA
* * * *
2884370 ACACATTCTCCTGATTAGGATAAATGATATTGATGATTCTCTCTAGCATGGAAAT-TTTT-TTTG
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * *
2884433 -CCTATTTTCCTTATAATCAAAGTTTATCCCTT-AGAAAAGACAAGCATCCACTCTCGTGACAAT
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGA-AAAAGACAAGCATCGATTCTCGTGACAGT
* * *
2884496 CACCACTCTTTTCAAGATTGAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATT
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * * * * * * *
2884561 CGTTAGTGCCGCAACAAAGGCTTTTCTTTCAATCATTTTTGCTAGAATCAAAGTTTATCTCTCAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * ** * * * * *
2884626 ATAAGACAAACATTAATAGTTATGTTAATCCCTACTCTTTTCAGGATTAGGCACCAAAAAAATGG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * *
2884691 TGTTCTCATAAGG-TACATGATATTGATGCTTTGGTTTCGCGAGAAAGACTTTCTTCCCACCAAA
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAAT
* * *
2884755 TTTTGAAAAGTCTAAATTCATGA
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * * *
2884778 CTCAAATGAGGCAAACATCGATTCTAGTAATGTTCCTCACTCATATCATAATTAGGTACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * ** *
2884843 CACATTCCCCTCATCAGGATAAATAATATTGATAATTTTTTCTAGTGTGGAAATCTTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * *
2884908 TCTATTTTCTTTAAAATCACAGTACATCCCCTGAAAAAGATAAGCATCGATTCTCGTGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * *
2884973 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTTATTAGGATACACGACAATGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* ** ** * *
2885038 TTGGTGTCGCAATAAAAGCTTTTCTTCCCATTGTTTCCGGTAGAATCAAAGTTTGGCACTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * * * * *
2885103 AAGACAAACATGAATAGTCTTACTAATCCCCATTATTTTAAGTATGAGGCACCGTAGACATAGTC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * * *
2885168 ATTGT-AGAATGG-TACATGATATTGACACTTTGGTTTCGCAAGAAGGGCTTTCTTCCCCTAATG
391 -TTCTCATAA-GGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAATT
* *
2885231 TATGAAAAGTCTAAGTTCATGC
454 TTTGAAAAGTCTAAGTTCGTGC
* * * *
2885253 CTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTTATTTCGTGATTAGGCTCTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* *
2885318 CACATTCCCCTCACTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTATTT-C
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2885382 CCTATTTTGCTTAAAATCAAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTCATGACAATCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* *
2885447 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACAGTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * *
2885512 TTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCATTTCTGATAGAATTAAAGTTTGACACTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * * *
2885577 AAGACAAACGTGAATAGTCATACTAATCCCCTTTCCTTTCAAGATTAGGCACCATAAACATAGTT
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * *
2885642 TTCTTATAAGGATACACGATATTGACGCTTTTGTTTCCCAAGAACGGCTTTCTTCCCATCAATTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAATTT
*
2885707 TTGAAAAGTCTAAGTTCCTGC
455 TTGAAAAGTCTAAGTTCGTGC
** * * *
2885728 CTCAAATGAGATGAACGTGGATTCTAGTAATGTTCTTCATTCGTTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * *
2885793 CACATTCCCCTCATTAGGATAAATAATATTGACGATTTTCTCTAGCATTG-AAATCGTTTCTTTG
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCA-TGAAAATCTTTTCTTTG
* * * * * **
2885857 CCCTATTTTGCTTAAAATTAAAGTTCATCCGTTGAAAAAGATAAGCATCGATTCTCATGATTGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * * * * * * * *
2885922 GCTACTCTTTTTAAGATTGGGAACCAAGATCGCATTCCCTTTAATAGGATACAGGAGACTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * **
2885987 TTT-G-G--G-----AAGGCTTTTTTTTCAACC-TTTTTCGATAGAATCAAA--TTACCACTTAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTT-GATAGAATCAAAGTTTGTCACTTAA
* * * * *
2886040 ATAACACAAACATGAAAAGTCATACCAATCCCCATTCTTTTCAAGATTAGGCACAATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * ** * * * *
2886105 TCTTCTCAGAA-GAGCACACAATATTGACAATATT-GTTTCGCAAGAAAGGCCTTTTTTTCACTA
389 TCTTCTCATAAGGA-TACACGATATTGACGCT-TTGGTTTCGCAAGAAAGG-CTTTCTTCCCCCA
* * *
2886168 ATTTTTGTAAAGTCTATGTTCGTAC
451 ATTTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * *
2886193 CTCATATCAGACAAGA-ACT-GATTCTAGTAATAAT-TGTCCTTTATTTCATGATTAGGAACTAT
1 CTCAAATGAGACAA-ACA-TGGATTCTAGTAATGATCT-TCATTCATTTCGTGATTAGGCACTGT
* * * * * *
2886255 AAACACATTCTCCTGATTAGGATAAATAATATTGATGATTCTCTCTAGCATGCAAATCGTTTCTT
63 AAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTT
* * * *
2886320 TTCTCTATTTTCCTTAAAATCAAAGTACATCCCTTGAAAAAGATAAGCATCGATTCTCGTGACAG
128 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAG
* * * *
2886385 TCTCCACTCTTTTCAAGTTTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGGCAATGAT
193 TCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
** * * * *
2886450 GCTTTGGTGTCGCAATAAAAGCTTTTC-TTCTCATTGCTTATGGTAGAATCAAAGTTTGGCACTT
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTC-CACCGTTTTTGATAGAATCAAAGTTTGTCACTT
* * * * *
2886514 AAATAAGACAAACATGAACAGTCTTACTAATCCCCATTATTTTTAGGATTAGGCACCATAACCAT
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * * **
2886579 AGTCTT-TGTAGAATGATACACGATATTGACACTTTGTTTTCGCAAGAAGGGCTTTCTTCCCCTT
387 AGTCTTCT-CATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCA
*
2886643 ATTTTTGAAAAGTCTAAGTTCATGC
451 ATTTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2886668 CTCAACTGAGACAAACATTGATTCTAGTAATGAT-TGTCATTTATTTCGTGATTGGGCACTATAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCT-TCATTCATTTCGTGATTAGGCACTGTAA
* *
2886732 ACACATTCCCCTCATTAGGATAAAAGATATTGATGA-TTTCTCTAGCATGAAAATCTTTTATTT-
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * *
2886795 CCCTATTTTGCTTAAAATCAAAGTTCATTCCTTGAAAAAGATAAGCATCGATTCTCATGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2886860 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACAAGACAGTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * ** * * * * *
2886925 TTTGGTGTTGCAAGAAACGCTTTTCTTTTCACTATTTTCGATAGAATTAAAGTATGACACTCAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * *
2886990 TAAGACAAACATGAATAGTCATACTAATCCCTATTCCTTTCAGGGTTAGGCACCATAAACATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * * * *
2887055 TTTCTTATAAGGATACACGATATTGACGCTCTT-ATTTCCCAAGAACGGCTGTCTTCTCACCAAT
390 CTTCTCATAAGGATACACGATATTGACGCT-TTGGTTTCGCAAGAAAGGCTTTCTTC-CCCCAAT
*
2887119 TTTTGAAAAGTCTAAGTTCCTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* ** * *
2887142 CTCAAATTAGATGAACATGGATTCTAGTAATGTTCTTCATTCGTTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2887207 CACATTCCCCTTATTAGGATAAATAACATTGATTATTTTCTCTAGCATGGAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * *
2887272 CCTATTTTGCTTAAAATCAAAGTTCATCCCTTGAAAAAGATAGGCATCGATTCTCATCACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * *
2887337 CCACTATTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACAATGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
2887402 TTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCTTTTTTGATAGAATCAAAGTTTGACACCTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2887467 AAGACAAACATGGATAGTCATACTAATCCCCTTTCCTTTCAGGATTAGGCACCATAAACATAGTT
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * *
2887532 TTCTTATAAGGATACACGATATTGACGCCTTT-GTTTCCCAAGAACGGCTTTCTTCCCCCTAATT
391 TTCTCATAAGGATACACGATATTGACG-CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AATT
* * *
2887596 TTTGTAAAGTCTAAATTCCG-AC
454 TTTGAAAAGTCTAAGTT-CGTGC
* * * * * * * * * **
2887618 GTCAAATGAGACGAATATGGATTCCAGTAATGTTTTTGAATCGTTTCACGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * *
2887683 AACATTCCCCTTATTAGGATAAATAATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * *
2887748 CCAATTTTGCTTAAAATCAAAGTTTATCCCTTGAAAAAGATAAGCATCGATTCTCATGATAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* *
2887813 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACAATGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
2887878 TTGGTGTTGCAAGAAAAACTTTTCTTTTCACCTTTTTTGATAGAATCAAAGTTTGACACTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2887943 AAGACAAACATGGATAGTCATACTAATCCCCTTTCCTTTCAGGATTAGGCACCATAAACATAGTT
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * *
2888008 TTCTTATAAGGATACACGATATTGATGCTTTTGTTTCCCAAGAACGGCTTTCTTTCCCCCAATTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCCCAATTT
* *
2888073 TTGTAAAGTCTAAGTTCTTGC
455 TTGAAAAGTCTAAGTTCGTGC
* * * * * * *
2888094 GTCAAATGAGACGAACATGGATTCTAGTAATGTTTTTCAATCGTTTCATGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * *
2888159 AACATTCCCCTTATTAGGATAAATAATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * *
2888224 CCAATTTTGCTTAAAATCAAAGTTTATCCCTTGAAAAAGATAAGCGTCGATTCTCATGATAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * **
2888289 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCAGTAGGATACAGGTTATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * * ** * *
2888354 TTGGGGTTGCAATAAAGGCTTTTTTTTCAACCGTTTTCGATAGAATCAAATTTTACCATTTAAAC
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2888419 AAGACAAACATGAAAAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACAATAAACATAGTC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * * * * * *
2888484 TTTTTAGAA-GAGCACACGATATTGAC-ATTATCGTTTCGGAAGAAAGGCTTTTTTTCCACTAA-
391 TTCTCATAAGGA-TACACGATATTGACGCTT-TGGTTTCGCAAGAAAGGC-TTTCTTCCCCCAAT
* * * *
2888546 -TTTGCAGAGTCTATGTTCGTAC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * * *
2888568 CTCATATCAGACAAGA-ATTGATTCTAGTAGTAATCATCCTTTATTTCGTGATTAGGCACTATAA
1 CTCAAATGAGACAA-ACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAA
* * * *
2888632 ACACATTCTCCTGATTAGGATAAATGATATTGATGATTCTCTCTAGCATGGAAATCTTTT-TTT-
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * *
2888695 ACCTATTTTCCTTATAATCAAAGTTCATCCC-TCAGAAAAGACAAGCATCCG-CTCTCATGACA-
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGA-AAAAGACAAGCAT-CGATTCTCGTGACAG
* *
2888757 TTTAGCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
193 TCT-CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * ** * * * *
2888822 TTCTTTGGTGCCGTAATAAAGGCTTTTCTTTTGAATCATTTTTGATAGAATCAAAGTTTATCTCT
257 TGCTTTGGTGTCGCAATAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACT
* * * * ** *
2888887 CAAATAAGACAAACATGAATAATTATATTAATCCCCATTCTTTTCTA-GATTAGGCATAAAAAAC
321 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAAC
* * * * * *
2888951 ACAGTGTTCTCTTAAGG-TACACGATATTGACGCTTCGATTTTGCAAGAAAGGCTTTCTTCCCTC
385 ATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-C
* * * *
2889015 TAATTTTTGAAAAGTCTAAATTCATGA
449 CAATTTTTGAAAAGTCTAAGTTCGTGC
* ** * * * *
2889042 CTCAAATGAGACAAACTTGGATTCTAGTGTTGATCTTCAATCATTTTGTGATTAAGCA-TGGAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * **
2889106 TCGC-TT---CTTATTAGGATAAAGGATATTGATGATTTTCTCAAGCAT-AGAACTCGCTTCTTT
66 -CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGA-AAATCTTTTCTTT
* * * * *
2889166 GCCCTATTTTGCTTTAAATTAAAGTTCATCCCTAGAAAAAGATAAGCATCGATTCTCGTGACAGT
129 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGT
* * * *
2889231 CTCCATTCTTTTTAAGATTAGGAACCAAGAACACATTCCCTTCATTAGGATACCTGACATTGATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * * * *
2889296 CTTCGGTG-CTACAATAAAGGTTTTTCTTTCGACTGTTTTTGATAGAATCAATGTTTGTTAATTA
259 CTTTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* * *
2889360 AATAAGACAAACATGAATAGTCATACTAATCCCCATTATTTTCAAGGATTAGGCTCCATAAGCAT
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACAT
* * *
2889425 AGTCTTCACATAAGGATATACGATATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTTCCCC
387 AGTCTTCTCATAAGGATACACG--ATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCC
*
2889490 TAATTTTTGAAAAGTCTAAGTTCGTGC
449 CAATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2889517 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * ** * * *
2889582 CACATTCCCCTCATTAGGATAAAGGATATTAATGATTTCCTCTAGTGTGGAAATCGTTTCTTTGA
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * * **
2889647 CTTATTTTGCTTAAAATTATAGTTCATCCCTAGGAAAAGACAAGCATCGATTGTCGTGGTAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2889712 CCACTCTTTTCAAAATTAGGAACCAAGAACACATTCTCTTCATTAGGATACAAGACATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * * *
2889777 TTGGTGCCGCAATAAAGGCTTTTCTTTCAACCGTTTTTGATATAATTAAAGTTTATCTCTCAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * * ** * * * *
2889842 AAGACAAACATGAACAGTTATATTAATCCACATTCTTTAAAAGATTCGGCACCAAAAACACAGTC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * ** **
2889907 TTCTCATAAGG-TACATGATAATGACACTTTGGGTTCATAAGAAAGGCTTTCTTGCTACCAATTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAATTT
* * *
2889971 TTGAAAAGTGTAAGCTCAG-GA
455 TTGAAAAGTCTAAGTTC-GTGC
* * *
2889992 CTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCTTTCATTTTGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2890057 CATATTCTCCGCATTAGGATAAAGGATATTGATGATTTTCTCTAGCGTGAAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * *
2890122 CCTATTTTGCC-TAAAATTAAAGTTCATCTCTGGAAAACGATAAGCATCGATTCTCATGACAATC
131 CCTATTTT-CCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2890186 TCCACTCTTTACAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACCTAACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * * * * *
2890251 TTCGGTG-CTACAATAAAGGTTTTTCTTTCGACTGTTTTTGATAGAATCCACGTTTGTTAATTAA
260 TTTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * *
2890315 ATAAGACAAACATGAACAGTCATACTAATCCCCATTTTTTTCAAGGATTAGGCTCCATAAGCATA
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATA
* * * *
2890380 GTCTTCACATAAGGATATACGATATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCCCCT
388 GTCTTCTCATAAGGATACACG--ATATTGACGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCCC
*
2890445 AATTTTTGAAAAGTCTAAGTTTGTGC
450 AATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2890471 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2890536 CACATTCCCCTCATTAGGATAAAGGATATTAATGATTTCCTCTAGCATGGAAATCGTTTCTTTGA
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * ** * * * **
2890601 CTTATTTTGCTTAAAATTATTGTTCATCCCTAGGAAAAGACAAGCATCGATTGTCGTGGTAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2890666 CCACTCTTTTCAAAATTAGGAACCAAGAACACATTCCCTTCATTAAGATACAAGACATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * * * * *
2890731 TTGGTGGCGCAATAAAGGCTTTTCTTTCAACCGTTTTTTATATAATTAAAGCTTATCTCTCAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * * * * *
2890796 AAGACAAACATGAACAGTTATATTAATCCCCATTCTTTACAGGATTCGGCACCAAAAACACAGTC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * **
2890861 TTCTCATAAGG-TACATGATAATGACACTTTGGTTTCACAAGAAAGGCTTTCTTGCTACCAATTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAATTT
* * * *
2890925 TTGAAAAGTGTAAGCTCATGA
455 TTGAAAAGTCTAAGTTCGTGC
* * * *
2890946 CTCAAATGAGACTAACATGGATTCTAGTATTGATCTTCTTTCATTTTGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * *
2891011 CACATTCTCCGCATTAGGATAAAGGATATTGATGATTTTCCCTAGCGTGGAAATCATTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * *
2891076 CCTATTTTGCTTAAAATTAAAGTTCATCTCTGGAAAACGATAAGCATCGATTCTAGTGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* *
2891141 CCACTCTTTACAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACTTGACATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* ** *
2891206 TTGGTG-CTGCAATAAAAACTTTTCTTTCCACTATTTTTGATAGAATAAAAGTTTGTCACTTAAA
261 TTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * *
2891270 TAAGACAAACATGAATAGTCATGCTAATCCCCATTATTTTCAGGATTCA-GCACCATAAGCAAAG
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATT-AGGCACCATAAACATAG
* * * * * * *
2891334 TCTTCTCATAAGGATATATGATATTGATGC-TTCGATTCACAAGAAAGGCTTTCTTTCCCCTAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCCCAAT
* * * *
2891398 TTCTAAAAAATCTAAGTTCGAGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * * *
2891421 TTTAAATTAGACGAACATGGATTCTAATAATGGATCTTCATTCATTTCGTGATTAGGCATTTTAA
1 CTCAAATGAGACAAACATGGATTCTAGTAAT-GATCTTCATTCATTTCGTGATTAGGCACTGTAA
* * * * * * *
2891486 ACACATTCCCCTCAATAGGATAAATAATATTGATGATTTTCTCGAGCTTGGAAATCATTTATTTG
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * *
2891551 CCCTATTTTCCTTAAAATCAAAGTTCATCACTTGAAAAAAACAAGCATTGATTCTTGTGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2891616 TCCAC-CATTTTCAAGATTTGGAACCAA-AGACACATTCCCTTCCTTAGGATACATGACATTCAT
195 TCCACTC-TTTTCAAGATTGGGAACCAAGA-ACACATTCCCTTCATTAGGATACATGACATTGAT
* * ** * *
2891679 GTTTTGGCGTCGCAATAAAAGCTTTTCTTTCCACTTTTTTTGATAAAATCAAAGTTTGACACTTA
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* * * *
2891744 AATAAGACAAACATGGATAGTCGTACTAAT-CCCATTCTTTTAAGGATTAGGCACCGTAAACATA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * *
2891808 GTTTTCTCATAAGGATATATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TGTCCCCCCA
388 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCT-T-CCCCCA
*
2891872 ATTTTTG-AAAGTCTAAGTTCATGC
451 ATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2891896 CTCAAACGAGACAAACATGGATTCTAGTAACGATCTTCATTTATTTCGTGATTAGGCACTGCAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2891961 CACATTCCCCTCATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGGAAATCGTTCCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * *
2892026 CCTATTTTGCTT-AAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGACAGTCC
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * * * ** ** *
2892090 CCACTATTTTCAAGATTGGGAACTAGGAATACTTTCCCTTCCCTAAAATACATGATATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * *
2892155 TTGGTGTCGTAATAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAATTTTTCACTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2892220 AAGACAAACATGAAT-GTTCCTAGTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATTGT
326 AAGACAAACATGAATAG-TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * *
2892284 CTTCAT-ATAAGGATACACAATATTGATGCTTTAGTATCGCAAGAAAGGCTTTCTTCCCCCTAAT
390 CTTC-TCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AAT
* *
2892348 TTTTGAGAAGTCTAAGTTCGAGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2892371 CTCAAATAAGAGAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATGAGGCATTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * **
2892436 CACAATCCCATCATTAGGATAAATGATATTAACAATTTTCTCTAGCATGAAAATCTTTT-TTT-C
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * **
2892499 CTTATTTTCCTTAAAAT-AATAGTTCATCCCCTAAAAAAGACAAG-AGTCGATTCTTGTGACAAA
131 CCTATTTTCCTTAAAATCAA-AGTTCATCCCTTGAAAAAGACAAGCA-TCGATTCTCGTGACAGT
* * * * * *
2892562 CTCCACACTTTTCGAGATTGGGAACCAAGAACACATTCCTTTCATTAGGACACACGGCATTGATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * ** * *
2892627 CTTTGGTGTCGTAGTAAAGGCTTTT-TTTTAACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
** * *
2892691 ATAAGACAAATGTTAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * *
2892756 TCTTTTCATAAGGATACACGATACTGACGCTTTGATTTCGCAAGAAAGGCTGTCTACCCCTCAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCC-CAAT
*
2892821 TTTTGAAAAGTCTAAGTTCCTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
** ** * * * * * **
2892844 GGCAAATGAGATGAGCATTGATTCTAGTAATGTTCTTCATTCATTTCGT-AGTTAGACTCCATAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGA-TTAGGCACTGTAA
* * * *
2892908 ACACATTCCTCTCATCAGGATAAATAATATTGACGATTTTCTCTAG--TGTAGAAATCTTTTCTT
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATG-A-AAATCTTTTCTT
* * * * * *
2892971 CGCCCTATTTTTCTTAAAATCAAAGTTCATCCATCGAAAAAGATAAGCATCGATTCTCCTGACAG
128 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAG
* * * * * *
2893036 TCTCCACTATTTTCAAGATTGAGAATCATGAACGCATTCCCTTCGTTAGGATACATGACATTGAT
193 TCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * ** * * **
2893101 GCTTTCGTGTCGCAATAAAAGCTTTTCTTCCCATTGTTTCT-AGCAGAATCAAAGTTTGGAACTT
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGA-TAGAATCAAAGTTTGTCACTT
* * *
2893165 AAATAAG----ACATGAATAGTCATACTAATCCCTATTATTTTTAGGATTAGGCACCATAAACAT
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * *
2893226 AGTCTTCTCATAATGG-TACATGATATTGACGCTTTGGTTTCGCAAGAAATGTTTTCTTCACCCC
387 AGTCTTCTCATAA-GGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCC
* *
2893290 AATTTTTGAAAAATCTAAGTTCCTGC
450 AATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2893316 ATCAAATGAGACGAACATGGATTCTAGTAATGTTCTTCATTCATTTCGTGATTAGGCACTGTAAG
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2893381 CACATTCCCTTCGTTAGGATAAATGATATTGACGATTTTCTCTAGCATGGAAATCTTTTCTTCT-
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTT-TG
* * * * * * *
2893445 CTCAATTTTCCTTAAAATCAAAGTTCATCCCCTGAATAAGATAAGAATTGATTCTCGTGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * *
2893510 CCCACTCTTTTCAAGATTGGGAACCAAGAACAAATTCCCTTGATTAGGATGCATGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * ** * *
2893575 TTTGGTGTTGCAATAAAGGCTTTTCTTTCGACCCTTTTTGATA-AGGCAAAGTTTGTCTCTCAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * * * * ** *
2893639 TAAGACAAACATTAGTAGTAAGACTAAGCCACATTCTTTTCAAAATTAGGCACCATAAACATTGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* *
2893704 CTTCTCATAAGGATACACGATATTGACGTTTTGGTTTCGCAACAAAGGCTTTCTTCTCCCCAATT
390 CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCCAATT
* *
2893769 TTTGAAAAGTCTAAGTTCCTGG
454 TTTGAAAAGTCTAAGTTCGTGC
* * * * *
2893791 CTCAAATAATACGAACATGGATTCTAGTAATGTTCTTCATTCATTTCGTGATTCGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * *
2893856 CACATTCCCCTAATTAAGATAAATAATATTGATGATTTTCTCTAGCATGGAAATCTTTTTTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2893921 CCTATTTTCCTTGAAATGAAAGTTCAT-CCTTGGAAAAAGATAAGCATCGATTCTCGTGACAATC
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTT-GAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * *
2893985 TCCATTCTTTTCAAGATTGGGAATCAAGAACACATTCCCTTCATTAGGATACTTGGCATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * *
2894050 CTTCGTGTGGCAGA-AAAGGCTTTTCTTTCAACCGTTTTTGATAAAATCAAAGTTTGTC-TTTCA
260 TTTGGTGTCGCA-ATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTT-A
* * * *
2894113 AATAAGACAAACGTTAATAGTCATACTAACCCCCAATCTTTTCAGGATTAGGCACCATAAACATA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
*
2894178 GTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAA
388 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AA
* *
2894243 TTTTTGAAAAGTCTAAGTTCCTAC
452 TTTTTGAAAAGTCTAAGTTCGTGC
** * * **
2894267 CTCAAATGAGATGAACATTGATTCTAGTAATGTTCTTTTTTCATTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * **
2894332 CACATTCCCCTCATCAAGG-TAAATAATATTGATGATTTTCTGTAGTGTGAAAATCTTTTCTTTG
66 CACATTCCCCTCAT-TAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * * * *
2894396 TCTTATTTTTCATAAAATCAAAGTTCATCCATTGAAAAAGATAAGCATCGATTCTCGTGACAATC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * * * * * * *
2894461 TCTATTCTTTCCAAGAGTGGGAACCACGAACACATTCCTTTTAGTAGGATGCATGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
** * * *
2894526 TTTGGTGTCGCAATAAAAGCTTTTC-TTCCTATTGTTTCT-AGTAAAATCAAAGTTTGGCACTTA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCC-ACCGTTTTTGA-TAGAATCAAAGTTTGTCACTTA
* * ** ** * *
2894589 TATAAGACAAACATGAATAGTCATACTAATTCCTTTTC-GGT-AAGATCATAAAATGCTACCCGA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGAT--T---AGGC-A-CC-A
* **** * * * * * * *
2894652 -AAATATCAGTAAGATCATAAAATGCTACCCGAAAATAT-AC-ATTTGAAAATTAT-GCAAACAA
380 TAAACAT-AGTCTTCTCAT--AAGGATACACG-ATAT-TGACGCTTTG---GTT-TCGC-AA-GA
* *** ** ** *** *
2894713 AAGGGATTGGAGTCAACCAAAATTT--ATTTTCTAAGTT-TTG-
434 AA-GGCTT-TCTTCCCCCAATTTTTGAAAAGTCTAAGTTCGTGC
* * * *** * * * ** * *** * *
2894753 -TTATATCA-A-AAAGGGGGAGAT-T-GTTAGGATCTTGGTTTCGATAT-AACA-AAGG-ATTGA
1 CTCAAATGAGACAAACATGGA-TTCTAGTAATGATCTT-CATTC-ATTTCGTGATTAGGCACTG-
* ***** * * * * * * * *
2894810 ATAAA-ACCTAAAATTAATT-TGA-AAATACCAAAAATG-TG-TTTTAT-T--CAAT-TAAGTAC
62 -TAAACACATTCCCCTCATTAGGATAAAT---GATATTGATGATTTTCTCTAGC-ATGAAAAT-C
* ** * * * * *
2894866 TTTATAAATTTTGTGCTAAATGATTT--TT-AACTCACTAAATGTT--T-TCTAG-ATAAGTATA
121 TTT-T---CTTTGCCCT--AT--TTTCCTTAAAAT--C-AAA-GTTCATCCCTTGAAAAAG-ACA
* ** * *** * * * * * ** * *
2894924 A--AT-G-TTTTCAAGGCTTAAAAT-GAGTGTTTT-TAGAGTT--AAAATATATCAA-A-GTATC
173 AGCATCGATTCTCGTGAC--AGTCTCCACTCTTTTCAAGA-TTGGGAACCA-A-GAACACAT-TC
** * * * **
2894979 GATACA-TAGGTATTTGTATCGAT-ACATTAAGGTTGACTTAGGCTACAAAGGTCAAAACCCTGA
232 CCTTCATTAGG-A----TA-C-ATGACATT---GATG-CTTTGG-T------GTCGCAA---T-A
* ** * * * * * *
2895042 AAAG--TATCGATACACC-TTCAAATGTATCGATACAGATTGCATAGTATCGATACATTGTATCG
275 AAAGCTTTTCTTTCCACCGTT----T-T-T-GAT--AGAAT-CAAAGT-TTG-T-CACT-TA--A
* * * * ** * *
2895104 ATACATGACCAAATGTATCGAGA-ATGT-AT-C-GATACCGGTCATTGGCAGTAGCTTGGCAGTA
324 ATA-A-GA-CAAA--CAT-GA-ATA-GTCATACTAAT-CC--CCATT--C-TTTTC-AGG-ATTA
* * * * * * * * *
2895165 GCCACCCTTAAC-T-GTTTGTATCGATACAATGCATCGATACATCCCAAAATGTATCGATACATT
373 GGCACCATAAACATAGTCT-TCTC-AT--AA-G----GATACA--CGATATTG-A-CG---CTTT
* * * ** ** ** * * * * *
2895228 GGCTT-G---TAACGG-TTAGTAACGGCTATATTTTCAAATG-C-ATGTATCGATAC
422 GGTTTCGCAAGAAAGGCTTTCTTCCCCCAAT-TTTTGAAAAGTCTAAGT-TCG-TGC
* * * * * * ** *
2895278 ATCCCAAATTGTATCGATACATTTACACA-GGATTGCATTA-AAATAAGCTCCA-ACAAGTC--A
1 --CTCAAA-TG-A--G--ACA---A-ACATGGATT-C--TAGTAATGATCTTCATTCATTTCGTG
* * ** * ** * ** ** *
2895338 ATAACGGCTAC---AAACTCCA--CCAATCAATCTG-CAACGGATATATCAGCATAGA-TGGCTA
51 ATTA-GGC-ACTGTAAAC-ACATTCCCCTCATTAGGATAAATGATAT-T--G-AT-GATTTTCTC
* * * ** * ** *** **
2895396 TA-AAT-AAGAGC--TTC-CAG--C-A----GC--AAAA-CACAAG-AAAAAACAAGCAAAAA-A
108 TAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA-AAGTTCATCCCTTG-AAAAAGA
* * * * * * * *****
2895444 CATCTAGCAATCAAAGTTTTCAAAGATCAAAGAGT-TTCA-TATTTTCAAGAGCTTTTGTTTTTA
171 CA---AGC-ATC-GA-TTCTC---G-T--GACAGTCTCCACTCTTTTCAAGA---TTGGGAACCA
* * ** * ** ** ** ***
2895507 TTGTCAATATTTTCAAAGC-TC-TTTTG-TATTTGATTTTGA-GCTTACAT-TC-CACA-AACAC
221 -AG--AACACATTC---CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA-ATAA-A-
***** * ** *** * * ***
2895565 CAGCCTAATTAGAGGCAATTGTTGTTTG-TA-AACTTTCTTTGTTTTGTTGAGGTTGTGTTCAAC
277 -AG-CT--TTTCTTTCCACCGTT-TTTGATAGAA---TCAAAG-TTTG-TCA-CTT-AAAT-AA-
* * * ** ****** * * ** * * * *
2895628 CGA-AAA-GTGTTAAT-CTCTTAGGAATTTGGGGTATAGTTCTTGA--A-G-A-GATTAAGA-GG
328 -GACAAACATG--AATAGTCATACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAG
* * * ** ** * * * * * *
2895684 TTGTTATC-TTAGCCTTA-AAAAGATT-AGGGTTTGGTTACGCACCATAAACATAGTCTTCTCAT
389 -TCTTCTCATAAG-GATACACGATATTGACGCTTTGGTTTCG---CA-AGA-A-AGGCTT-TC-T
* *** * * ** *
2895746 AAGGATACATGATATTGACGCTTTGGTTACGCAAG--AAAGGCTTTTTTACC
444 -----TCCCCCA-ATT-----TTT-G--A--AAAGTCTAA-G--TTCGT-GC
* * ** * * *
2895796 CCCAATTTTTGACAAGTCCA-AG-TTCTTGCCTCAAATGACACGAATATGGATTCTAGTATTGTT
1 CTCAA-ATGAGACAA--ACATGGATTCTAG--T--AATG--------------------A----T
* * * * * * *
2895859 CTTCAGTCATTTTGTGATTGGGCACTATAAACACATTCCCTTCGTTAGGATAAATAATATTGATG
35 CTTCATTCATTTCGTGATTAGGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATG
** * * *
2895924 ATTTTCTCTAGTGTGGAAATCTTTTCTTTGCTCTATTTTCCTTAAAATCAATGTTCATCCCTTGA
100 ATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGA
* * * * *
2895989 AAAAGATAAGCATCGATTCTCATGACAGTCTCCATTCTTTACAAGATTGGGAACCAAGAACGCAT
165 AAAAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACAT
* * * * **
2896054 TCCCTTCATTAAGATACATGACATTGATGCTTTGGTGTTGCAATTAAAGCTTTTCTTCCCATTGT
230 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGT
* * * * * * *
2896119 TTCT-AGTAGAATCAAAGTTTGGCTCTTAAATAAGACAAACATGAGTAGTCTTACTAATCTCCAA
295 TTTTGA-TAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCAT
* * * * * **
2896183 TATTTTCTA-GATTA-GTACCACAAACATAGTCTTCGT-AGAATGATACACGATATTGAAACTTT
359 TCTTTTC-AGGATTAGGCACCATAAACATAGTCTTC-TCATAAGGATACACGATATTGACGCTTT
* **
2896245 GGTTTCGCAAGAAGGGCTTTCTTCCCCCAATTTTTGAAAAGTCTAAGTTTATGC
422 GGTTTCGCAAGAAAGGCTTTCTTCCCCCAATTTTTGAAAAGTCTAAGTTCGTGC
* * * * **
2896299 CTCAAATGAGACAAACTTTGATTCTAGTAATGATCTTCATTTATTTCGTAATTAGGCACTACAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2896364 CACATTTCCCTCATTAGGATAAATGATATTAATGATTTTCTTTAGAATGAAAATATTTTATTT-C
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * *
2896428 TCTATTTTCCTTAAAATCAAAGTTCAACCCTTGAAAAAGATAAGCATCGATTCTCATGACAATCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2896493 CCACTCTTTTCAAGATTGTGAACCATA-AACACATTCCCTTCAATAGGATACAAGACATTAATGC
196 CCACTCTTTTCAAGATTGGGAACCA-AGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * *
2896557 TTTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATGGAATTAAAGTTTGAT-ACTTAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG-TCACTTAA
* * * *
2896621 ATAAGACAAAGATGAATAGTCATACGAATCCCCTTTCCTTTCAGGATTAGGCACCATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * * * *
2896686 TTTTCTTATAAGGATATACGATATTGATGTTTTTGTTTC-CTAAGAACGGCTTTCTTCGCACCAA
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGC-AAGAAAGGCTTTCTTC-CCCCAA
* *
2896750 TTTTCGAAAAGTCTAAGTTCCTGC
452 TTTTTGAAAAGTCTAAGTTCGTGC
* * *
2896774 CTCAAATAAGACGAACATGGATTCTAGTAATGTTCTTCATTCATTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2896839 CAAATTCGCCTCATTAGGATAAA-GAATATTGATGATTTTCTCCAGCTTGGAAATCGTTTCTTTG
66 CACATTCCCCTCATTAGGATAAATG-ATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * ** * ** ** *
2896903 TCCTGTTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGGTAAGCGTAAATTCTCAAGATAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * * *
2896968 TCCACTCTTTTCAAGATTGGG-ACCAAGAACGCATTCTCTTTAATAGGATACAGGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * **
2897032 TTTGGGGTTGCAATAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTACCACTTAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * * * *
2897097 TAAGATAAACATGAAAAGTCAAACTAATCCCCATTCTTTTCAAGATTAGGCACAATAAATATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* ** * ** * * * *
2897162 CTTCTTATAAGGGCACACGATATTGAC-ATTATCTTTTCGCAAGAAAGACTTTTTTCACACTAAT
390 CTTCTCATAAGGATACACGATATTGACGCTT-TGGTTTCGCAAGAAAGGCTTTCTTC-CCCCAAT
* * *
2897226 TTTTGCAAAGTCTATGTTCGTAC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * * *
2897249 CACATATCAGATAAGA-ATTGATTCTAGTAATAATCATCCTTCATTTCGTGATTAGGCACTATAA
1 CTCAAATGAGACAA-ACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAA
* * * *
2897313 ACACATTCTCCTGATTAGGATAAATGATATTGATGATTCTCTCTAGCATGGAAAT-TTTT-TTTG
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * *
2897376 -CCTATTTTCCTTATAATCAAAGTTTATCCCTT-AGAAAAGACAAGCATCCACTCTCGTGACAAT
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGA-AAAAGACAAGCATCGATTCTCGTGACAGT
* * *
2897439 CACCACTCTTTTCAAGATTGAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATT
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * * * * * * *
2897504 CGTTAGTGCCGCAACAAAGGCTTTTCTTTCAATCATTTTTGCTAGAATCAAAGTTTATCTCTCAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * ** * * * * *
2897569 ATAAGACAAACATTAATAGTTATGTTAATCCCTACTCTTTTCAGGATTAGGCACCAAAAAAATGG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * *
2897634 TGTTCTCATAAGG-TACATGATATTGATGCTTTGGTTTCGCGAGAAAGACTTTCTTCCCACCAAA
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAAT
* * *
2897698 TTTTGAAAAGTCTAAATTCATGA
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * * *
2897721 CTCAAATGAGGCAAACATCGATTCTAGTAATGTTCCTCACTCATATCATAATTAGGTACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * ** *
2897786 CACATTCCCCTCATCAGGATAAATAATATTGATAATTTTTTCTAGTGTGGAAATCTTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * *
2897851 TCTATTTTCTTTAAAATCACAGTACATCCCCTGAAAAAGATAAGCATCGATTCTCGTGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * *
2897916 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTTATTAGGATACACGACAATGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* ** ** * *
2897981 TTGGTGTCGCAATAAAAGCTTTTCTTCCCATTGTTTCCGGTAGAATCAAAGTTTGGCACTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * * * * *
2898046 AAGACAAACATGAATAGTCTTACTAATCCCCATTATTTTAAGTATGAGGCACCGTAGACATAGTC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * * *
2898111 ATTGT-AGAATGG-TACATGATATTGACACTTTGGTTTCGCAAGAAGGGCTTTCTTCCCCTAATG
391 -TTCTCATAA-GGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAATT
* *
2898174 TATGAAAAGTCTAAGTTCATGC
454 TTTGAAAAGTCTAAGTTCGTGC
* * * *
2898196 CTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTTATTTCGTGATTAGGCTCTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* *
2898261 CACATTCCCCTCACTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTATTT-C
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2898325 CCTATTTTGCTTAAAATCAAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTCATGACAATCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* *
2898390 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACAGTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * *
2898455 TTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCATTTCTGATAGAATTAAAGTTTGACACTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * * *
2898520 AAGACAAACGTGAATAGTCATACTAATCCCCTTTCCTTTCAAGATTAGGCACCATAAACATAGTT
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * *
2898585 TTCTTATAAGGATACACGATATTGACGCTTTTGTTTCCCAAGAACGGCTTTCTTCCCATCAATTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAATTT
*
2898650 TTGAAAAGTCTAAGTTCCTGC
455 TTGAAAAGTCTAAGTTCGTGC
** * * *
2898671 CTCAAATGAGATGAACGTGGATTCTAGTAATGTTCTTCATTCGTTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * *
2898736 CACATTCCCCTCATTAGGATAAATAATATTGACGATTTTCTCTAGCATTG-AAATCGTTTCTTTG
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCA-TGAAAATCTTTTCTTTG
* * * * * **
2898800 CCCTATTTTGCTTAAAATTAAAGTTCATCCGTTGAAAAAGATAAGCATCGATTCTCATGATTGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * * * * * * * *
2898865 GCTACTCTTTTTAAGATTGGGAACCAAGATCGCATTCCCTTTAATAGGATACAGGAGACTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * **
2898930 TTT-G-G--G-----AAGGCTTTTTTTTCAACC-TTTTTCGATAGAATCAAA--TTACCACTTAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTT-GATAGAATCAAAGTTTGTCACTTAA
* * * * *
2898983 ATAACACAAACATGAAAAGTCATACCAATCCCCATTCTTTTCAAGATTAGGCACAATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * ** * * * *
2899048 TCTTCTCAGAA-GAGCACACAATATTGACAATATT-GTTTCGCAAGAAAGGCCTTTTTTTCACTA
389 TCTTCTCATAAGGA-TACACGATATTGACGCT-TTGGTTTCGCAAGAAAGG-CTTTCTTCCCCCA
* * *
2899111 ATTTTTGTAAAGTCTATGTTCGTAC
451 ATTTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * *
2899136 CTCATATCAGACAAGA-ACT-GATTCTAGTAATAAT-TGTCCTTTATTTCATGATTAGGAACTAT
1 CTCAAATGAGACAA-ACA-TGGATTCTAGTAATGATCT-TCATTCATTTCGTGATTAGGCACTGT
* * * * * *
2899198 AAACACATTCTCCTGATTAGGATAAATAATATTGATGATTCTCTCTAGCATGCAAATCGTTTCTT
63 AAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTT
* * * *
2899263 TTCTCTATTTTCCTTAAAATCAAAGTACATCCCTTGAAAAAGATAAGCATCGATTCTCGTGACAG
128 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAG
* * * *
2899328 TCTCCACTCTTTTCAAGTTTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGGCAATGAT
193 TCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
** * * * *
2899393 GCTTTGGTGTCGCAATAAAAGCTTTTC-TTCTCATTGCTTATGGTAGAATCAAAGTTTGGCACTT
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTC-CACCGTTTTTGATAGAATCAAAGTTTGTCACTT
* * * * *
2899457 AAATAAGACAAACATGAACAGTCTTACTAATCCCCATTATTTTTAGGATTAGGCACCATAACCAT
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * * **
2899522 AGTCTT-TGTAGAATGATACACGATATTGACACTTTGTTTTCGCAAGAAGGGCTTTCTTCCCCTT
387 AGTCTTCT-CATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCA
*
2899586 ATTTTTGAAAAGTCTAAGTTCATGC
451 ATTTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2899611 CTCAACTGAGACAAACATTGATTCTAGTAATGAT-TGTCATTTATTTCGTGATTGGGCACTATAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCT-TCATTCATTTCGTGATTAGGCACTGTAA
* *
2899675 ACACATTCCCCTCATTAGGATAAAAGATATTGATGA-TTTCTCTAGCATGAAAATCTTTTATTT-
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * *
2899738 CCCTATTTTGCTTAAAATCAAAGTTCATTCCTTGAAAAAGATAAGCATCGATTCTCATGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2899803 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACAAGACAGTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * ** * * * * *
2899868 TTTGGTGTTGCAAGAAACGCTTTTCTTTTCACTATTTTCGATAGAATTAAAGTATGACACTCAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * *
2899933 TAAGACAAACATGAATAGTCATACTAATCCCTATTCCTTTCAGGGTTAGGCACCATAAACATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * * * *
2899998 TTTCTTATAAGGATACACGATATTGACGCTCTT-ATTTCCCAAGAACGGCTGTCTTCTCACCAAT
390 CTTCTCATAAGGATACACGATATTGACGCT-TTGGTTTCGCAAGAAAGGCTTTCTTC-CCCCAAT
*
2900062 TTTTGAAAAGTCTAAGTTCCTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* ** * *
2900085 CTCAAATTAGATGAACATGGATTCTAGTAATGTTCTTCATTCGTTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2900150 CACATTCCCCTTATTAGGATAAATAACATTGATTATTTTCTCTAGCATGGAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * *
2900215 CCTATTTTGCTTAAAATCAAAGTTCATCCCTTGAAAAAGATAGGCATCGATTCTCATCACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * *
2900280 CCACTATTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACAATGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
2900345 TTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCTTTTTTGATAGAATCAAAGTTTGACACCTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2900410 AAGACAAACATGGATAGTCATACTAATCCCCTTTCCTTTCAGGATTAGGCACCATAAACATAGTT
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * *
2900475 TTCTTATAAGGATACACGATATTGACGCCTTT-GTTTCCCAAGAACGGCTTTCTTCCCCCTAATT
391 TTCTCATAAGGATACACGATATTGACG-CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AATT
* * *
2900539 TTTGTAAAGTCTAAATTCCG-AC
454 TTTGAAAAGTCTAAGTT-CGTGC
* * * * * * * * * **
2900561 GTCAAATGAGACGAATATGGATTCCAGTAATGTTTTTGAATCGTTTCACGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * *
2900626 AACATTCCCCTTATTAGGATAAATAATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * *
2900691 CCAATTTTGCTTAAAATCAAAGTTTATCCCTTGAAAAAGATAAGCATCGATTCTCATGATAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* *
2900756 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACAATGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
2900821 TTGGTGTTGCAAGAAAAACTTTTCTTTTCACCTTTTTTGATAGAATCAAAGTTTGACACTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2900886 AAGACAAACATGGATAGTCATACTAATCCCCTTTCCTTTCAGGATTAGGCACCATAAACATAGTT
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * *
2900951 TTCTTATAAGGATACACGATATTGATGCTTTTGTTTCCCAAGAACGGCTTTCTTTCCCCCAATTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCCCAATTT
* *
2901016 TTGTAAAGTCTAAGTTCTTGC
455 TTGAAAAGTCTAAGTTCGTGC
* * * * * * *
2901037 GTCAAATGAGACGAACATGGATTCTAGTAATGTTTTTCAATCGTTTCATGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * *
2901102 AACATTCCCCTTATTAGGATAAATAATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * *
2901167 CCAATTTTGCTTAAAATCAAAGTTTATCCCTTGAAAAAGATAAGCGTCGATTCTCATGATAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * **
2901232 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCAGTAGGATACAGGTTATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * * ** * *
2901297 TTGGGGTTGCAATAAAGGCTTTTTTTTCAACCGTTTTCGATAGAATCAAATTTTACCATTTAAAC
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2901362 AAGACAAACATGAAAAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACAATAAACATAGTC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * * * * * *
2901427 TTTTTAGAA-GAGCACACGATATTGAC-ATTATCGTTTCGGAAGAAAGGCTTTTTTTCCACTAA-
391 TTCTCATAAGGA-TACACGATATTGACGCTT-TGGTTTCGCAAGAAAGGC-TTTCTTCCCCCAAT
* * * *
2901489 -TTTGCAGAGTCTATGTTCGTAC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * * *
2901511 CTCATATCAGACAAGA-ATTGATTCTAGTAGTAATCATCCTTTATTTCGTGATTAGGCACTATAA
1 CTCAAATGAGACAA-ACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAA
* * * *
2901575 ACACATTCTCCTGATTAGGATAAATGATATTGATGATTCTCTCTAGCATGGAAATCTTTT-TTT-
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * *
2901638 ACCTATTTTCCTTATAATCAAAGTTCATCCC-TCAGAAAAGACAAGCATCCG-CTCTCATGACA-
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGA-AAAAGACAAGCAT-CGATTCTCGTGACAG
* *
2901700 TTTAGCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
193 TCT-CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * ** * * * *
2901765 TTCTTTGGTGCCGTAATAAAGGCTTTTCTTTTGAATCATTTTTGATAGAATCAAAGTTTATCTCT
257 TGCTTTGGTGTCGCAATAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACT
* * * * ** *
2901830 CAAATAAGACAAACATGAATAATTATATTAATCCCCATTCTTTTCTA-GATTAGGCATAAAAAAC
321 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAAC
* * * * *
2901894 ACAGTGTTCTCTTAAGG-TACACGATATTGACGCTTCGGTTTTGCAAGAAAGGCTTTCTTCCCTC
385 ATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-C
* * * *
2901958 TAATTTTTGAAAAGTCTAAATTCATGA
449 CAATTTTTGAAAAGTCTAAGTTCGTGC
* ** * * * *
2901985 CTCAAATGAGACAAACTTGGATTCTAGTGTTGATCTTCAATCATTTTGTGATTAAGCA-TGGAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * **
2902049 TCGC-TT---CTTATTAGGATAAAGGATATTGATGATTTTCTCAAGCAT-AGAACTCGCTTCTTT
66 -CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGA-AAATCTTTTCTTT
* * * * *
2902109 GCCCTATTTTGCTTTAAATTAAAGTTCATCCCTAGAAAAAGATAAGCATCGATTCTCGTGACAGT
129 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGT
* * * *
2902174 CTCCATTCTTTTTAAGATTAGGAACCAAGAACACATTCCCTTCATTAGGATACCTGACATTGATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * * * *
2902239 CTTCGGTG-CTACAATAAAGGTTTTTCTTTCGACTGTTTTTGATAGAATCAATGTTTGTTAATTA
259 CTTTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* * *
2902303 AATAAGACAAACATGAATAGTCATACTAATCCCCATTATTTTCAAGGATTAGGCTCCATAAGCAT
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACAT
* * *
2902368 AGTCTTCACATAAGGATATACGATATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTTCCCC
387 AGTCTTCTCATAAGGATACACG--ATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCC
*
2902433 TAATTTTTGAAAAGTCTAAGTTCGTGC
449 CAATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2902460 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * ** * * *
2902525 CACATTCCCCTCATTAGGATAAAGGATATTAATGATTTCCTCTAGTGTGGAAATCGTTTCTTTGA
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * * **
2902590 CTTATTTTGCTTAAAATTATAGTTCATCCCTAGGAAAAGACAAGCATCGATTGTCGTGGTAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2902655 CCACTCTTTTCAAAATTAGGAACCAAGAACACATTCTCTTCATTAGGATACAAGACATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * * *
2902720 TTGGTGCCGCAATAAAGGCTTTTCTTTCAACCGTTTTTGATATAATTAAAGTTTATCTCTCAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * * ** * * * *
2902785 AAGACAAACATGAACAGTTATATTAATCCACATTCTTTAAAAGATTCGGCACCAAAAACACAGTC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * ** **
2902850 TTCTCATAAGG-TACATGATAATGACACTTTGGGTTCATAAGAAAGGCTTTCTTGCTACCAATTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAATTT
* * *
2902914 TTGAAAAGTGTAAGCTCAG-GA
455 TTGAAAAGTCTAAGTTC-GTGC
* * *
2902935 CTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCTTTCATTTTGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2903000 CATATTCTCCGCATTAGGATAAAGGATATTGATGATTTTCTCTAGCGTGAAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * *
2903065 CCTATTTTGCC-TAAAATTAAAGTTCATCTCTGGAAAACGATAAGCATCGATTCTCATGACAATC
131 CCTATTTT-CCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2903129 TCCACTCTTTACAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACCTAACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * * * * *
2903194 TTCGGTG-CTACAATAAAGGTTTTTCTTTCGACTGTTTTTGATAGAATCCACGTTTGTTAATTAA
260 TTTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * *
2903258 ATAAGACAAACATGAACAGTCATACTAATCCCCATTTTTTTCAAGGATTAGGCTCCATAAGCATA
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATA
* * * *
2903323 GTCTTCACATAAGGATATACGATATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCCCCT
388 GTCTTCTCATAAGGATACACG--ATATTGACGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCCC
*
2903388 AATTTTTGAAAAGTCTAAGTTTGTGC
450 AATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2903414 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2903479 CACATTCCCCTCATTAGGATAAAGGATATTAATGATTTCCTCTAGCATGGAAATCGTTTCTTTGA
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * ** * * * **
2903544 CTTATTTTGCTTAAAATTATTGTTCATCCCTAGGAAAAGACAAGCATCGATTGTCGTGGTAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2903609 CCACTCTTTTCAAAATTAGGAACCAAGAACACATTCCCTTCATTAAGATACAAGACATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * * * * *
2903674 TTGGTGGCGCAATAAAGGCTTTTCTTTCAACCGTTTTTTATATAATTAAAGCTTATCTCTCAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * * * * *
2903739 AAGACAAACATGAACAGTTATATTAATCCCCATTCTTTACAGGATTCGGCACCAAAAACACAGTC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * **
2903804 TTCTCATAAGG-TACATGATAATGACACTTTGGTTTCACAAGAAAGGCTTTCTTGCTACCAATTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAATTT
* * * *
2903868 TTGAAAAGTGTAAGCTCATGA
455 TTGAAAAGTCTAAGTTCGTGC
* * * *
2903889 CTCAAATGAGACTAACATGGATTCTAGTATTGATCTTCTTTCATTTTGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * *
2903954 CACATTCTCCGCATTAGGATAAAGGATATTGATGATTTTCCCTAGCGTGGAAATCATTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * *
2904019 CCTATTTTGCTTAAAATTAAAGTTCATCTCTGGAAAACGATAAGCATCGATTCTAGTGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* *
2904084 CCACTCTTTACAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACTTGACATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* ** *
2904149 TTGGTG-CTGCAATAAAAACTTTTCTTTCCACTATTTTTGATAGAATAAAAGTTTGTCACTTAAA
261 TTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * *
2904213 TAAGACAAACATGAATAGTCATGCTAATCCCCATTATTTTCAGGATTCA-GCACCATAAGCAAAG
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATT-AGGCACCATAAACATAG
* * * * * * *
2904277 TCTTCTCATAAGGATATATGATATTGATGC-TTCGATTCACAAGAAAGGCTTTCTTTCCCCTAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCCCAAT
* * * *
2904341 TTCTAAAAAATCTAAGTTCGAGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * * *
2904364 TTTAAATTAGACGAACATGGATTCTAATAATGGATCTTCATTCATTTCGTGATTAGGCATTTTAA
1 CTCAAATGAGACAAACATGGATTCTAGTAAT-GATCTTCATTCATTTCGTGATTAGGCACTGTAA
* * * * * * *
2904429 ACACATTCCCCTCAATAGGATAAATAATATTGATGATTTTCTCGAGCTTGGAAATCATTTATTTG
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * *
2904494 CCCTATTTTCCTTAAAATCAAAGTTCATCACTTGAAAAAAACAAGCATTGATTCTTGTGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2904559 TCCAC-CATTTTCAAGATTTGGAACCAA-AGACACATTCCCTTCCTTAGGATACATGACATTCAT
195 TCCACTC-TTTTCAAGATTGGGAACCAAGA-ACACATTCCCTTCATTAGGATACATGACATTGAT
* * ** * *
2904622 GTTTTGGCGTCGCAATAAAAGCTTTTCTTTCCACTTTTTTTGATAAAATCAAAGTTTGACACTTA
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* * * *
2904687 AATAAGACAAACATGGATAGTCGTACTAAT-CCCATTCTTTTAAGGATTAGGCACCGTAAACATA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * *
2904751 GTTTTCTCATAAGGATATATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTT-TGTCCCCCCA
388 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCT-T-CCCCCA
*
2904815 ATTTTTG-AAAGTCTAAGTTCATGC
451 ATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2904839 CTCAAACGAGACAAACATGGATTCTAGTAACGATCTTCATTTATTTCGTGATTAGGCACTGCAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2904904 CACATTCCCCTCATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGGAAATCGTTCCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * *
2904969 CCTATTTTGCTT-AAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGACAGTCC
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * * * ** ** *
2905033 CCACTATTTTCAAGATTGGGAACTAGGAATACTTTCCCTTCCCTAAAATACATGATATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * *
2905098 TTGGTGTCGTAATAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAATTTTTCACTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2905163 AAGACAAACATGAAT-GTTCCTAGTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATTGT
326 AAGACAAACATGAATAG-TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * *
2905227 CTTCAT-ATAAGGATACACAATATTGATGCTTTAGTATCGCAAGAAAGGCTTTCTTCCCCCTAAT
390 CTTC-TCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AAT
* *
2905291 TTTTGAGAAGTCTAAGTTCGAGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2905314 CTCAAATAAGAGAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATGAGGCATTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * **
2905379 CACAATCCCATCATTAGGATAAATGATATTAACAATTTTCTCTAGCATGAAAATCTTTT-TTT-C
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * **
2905442 CTTATTTTCCTTAAAAT-AATAGTTCATCCCCTAAAAAAGACAAG-AGTCGATTCTTGTGACAAA
131 CCTATTTTCCTTAAAATCAA-AGTTCATCCCTTGAAAAAGACAAGCA-TCGATTCTCGTGACAGT
* * * * * *
2905505 CTCCACACTTTTCGAGATTGGGAACCAAGAACACATTCCTTTCATTAGGACACACGGCATTGATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * ** * *
2905570 CTTTGGTGTCGTAGTAAAGGCTTTT-TTTTAACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
** * *
2905634 ATAAGACAAATGTTAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * *
2905699 TCTTTTCATAAGGATACACGATACTGACGCTTTGATTTCGCAAGAAAGGCTGTCTACCCCTCAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCC-CAAT
*
2905764 TTTTGAAAAGTCTAAGTTCCTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
** ** * * * * * **
2905787 GGCAAATGAGATGAGCATTGATTCTAGTAATGTTCTTCATTCATTTCGT-AGTTAGACTCCATAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGA-TTAGGCACTGTAA
* * * *
2905851 ACACATTCCTCTCATCAGGATAAATAATATTGACGATTTTCTCTAG--TGTAGAAATCTTTTCTT
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATG-A-AAATCTTTTCTT
* * * * * *
2905914 CGCCCTATTTTTCTTAAAATCAAAGTTCATCCATCGAAAAAGATAAGCATCGATTCTCCTGACAG
128 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAG
* * * * * *
2905979 TCTCCACTATTTTCAAGATTGAGAATCATGAACGCATTCCCTTCGTTAGGATACATGACATTGAT
193 TCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * ** * * **
2906044 GCTTTCGTGTCGCAATAAAAGCTTTTCTTCCCATTGTTTCT-AGCAGAATCAAAGTTTGGAACTT
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGA-TAGAATCAAAGTTTGTCACTT
* * *
2906108 AAATAAG----ACATGAATAGTCATACTAATCCCTATTATTTTTAGGATTAGGCACCATAAACAT
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * *
2906169 AGTCTTCTCATAATGG-TACATGATATTGACGCTTTGGTTTCGCAAGAAATGTTTTCTTCACCCC
387 AGTCTTCTCATAA-GGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCC
* *
2906233 AATTTTTGAAAAATCTAAGTTCCTGC
450 AATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2906259 ATCAAATGAGACGAACATGGATTCTAGTAATGTTCTTCATTCATTTCGTGATTAGGCACTGTAAG
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2906324 CACATTCCCTTCGTTAGGATAAATGATATTGACGATTTTCTCTAGCATGGAAATCTTTTCTTCT-
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTT-TG
* * * * * * *
2906388 CTCAATTTTCCTTAAAATCAAAGTTCATCCCCTGAATAAGATAAGAATTGATTCTCGTGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * *
2906453 CCCACTCTTTTCAAGATTGGGAACCAAGAACAAATTCCCTTGATTAGGATGCATGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * ** * *
2906518 TTTGGTGTTGCAATAAAGGCTTTTCTTTCGACCCTTTTTGATA-AGGCAAAGTTTGTCTCTCAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * * * * ** *
2906582 TAAGACAAACATTAGTAGTAAGACTAAGCCACATTCTTTTCAAAATTAGGCACCATAAACATTGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* *
2906647 CTTCTCATAAGGATACACGATATTGACGTTTTGGTTTCGCAACAAAGGCTTTCTTCTCCCCAATT
390 CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCCAATT
* *
2906712 TTTGAAAAGTCTAAGTTCCTGG
454 TTTGAAAAGTCTAAGTTCGTGC
* * * * *
2906734 CTCAAATAATACGAACATGGATTCTAGTAATGTTCTTCATTCATTTCGTGATTCGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * *
2906799 CACATTCCCCTAATTAAGATAAATAATATTGATGATTTTCTCTAGCATGGAAATCTTTTTTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2906864 CCTATTTTCCTTGAAATGAAAGTTCAT-CCTTGGAAAAAGATAAGCATCGATTCTCGTGACAATC
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTT-GAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * *
2906928 TCCATTCTTTTCAAGATTGGGAATCAAGAACACATTCCCTTCATTAGGATACTTGGCATTGACTG
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA-TG
* * * * * * *
2906993 CCTTCGTGTGGCAGA-AAAGGCTTTTCTTTCAACCGTTTTTGATAAAATCAAAGTTTGTC-TTTC
259 CTTTGGTGTCGCA-ATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTT-
* * * *
2907056 AAATAAGACAAACGTTAATAGTCATACTAACCCCCAATCTTTTCAGGATTAGGCACCATAAACAT
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
*
2907121 AGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTA
387 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-A
* *
2907186 ATTTTTGAAAAGTCTAAGTTCCTAC
451 ATTTTTGAAAAGTCTAAGTTCGTGC
** * * **
2907211 CTCAAATGAGATGAACATTGATTCTAGTAATGTTCTTTTTTCATTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * **
2907276 CACATTCCCCTCATCAAGG-TAAATAATATTGATGATTTTCTGTAGTGTGAAAATCTTTTCTTTG
66 CACATTCCCCTCAT-TAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * * * *
2907340 TCTTATTTTTCATAAAATCAAAGTTCATCCATTGAAAAAGATAAGCATCGATTCTCGTGACAATC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * * * * * * *
2907405 TCTATTCTTTCCAAGAGTGGGAACCACGAACACATTCCTTTTAGTAGGATGCATGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
** * * *
2907470 TTTGGTGTCGCAATAAAAGCTTTTC-TTCCTATTGTTTCT-AGTAAAATCAAAGTTTGGCACTTA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCC-ACCGTTTTTGA-TAGAATCAAAGTTTGTCACTTA
* * ** ** * *
2907533 TATAAGACAAACATGAATAGTCATACTAATTCCTTTTC-GGT-AAGATCATAAAATGCTACCCGA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGAT--T---AGGC-A-CC-A
* **** * * * * * * *
2907596 -AAATATCAGTAAGATCATAAAATGCTACCCGAAAATAT-AC-ATTTGAAAATTAT-GCAAACAA
380 TAAACAT-AGTCTTCTCAT--AAGGATACACG-ATAT-TGACGCTTTG---GTT-TCGC-AA-GA
* *** ** ** *** *
2907657 AAGGGATTGGAGTCAACCAAAATTT--ATTTTCTAAGTT-TTG-
434 AA-GGCTT-TCTTCCCCCAATTTTTGAAAAGTCTAAGTTCGTGC
* * * *** * * * ** * *** * *
2907697 -TTATATCA-A-AAAGGGGGAGAT-T-GTTAGGATCTTGGTTTCGATAT-AACA-AAGG-ATTGA
1 CTCAAATGAGACAAACATGGA-TTCTAGTAATGATCTT-CATTC-ATTTCGTGATTAGGCACTG-
* ***** * * * * * * *
2907754 ATAAA-ACCTAAAATTAATTTA--A-AAATACCAAAAATG-TG-TTTTAT-T--CAAT-TAAGTA
62 -TAAACACATTCCCCTCA-TTAGGATAAAT---GATATTGATGATTTTCTCTAGC-ATGAAAAT-
* ** * * * * *
2907809 CTTTATAAATTTTGTGCTAAATGATTT--TT-AACTCACTAAATGTT--T-TCTAG-ATAAGTAT
120 CTTT-T---CTTTGCCCT--AT--TTTCCTTAAAAT--C-AAA-GTTCATCCCTTGAAAAAG-AC
* ** * *** * * * * * ** * *
2907867 AA--AT-G-TTTTCAAGGCTTAAAAT-GAGTGTTTT-TAGAGTT--AAAATATATCAA-A-GTAT
172 AAGCATCGATTCTCGTGAC--AGTCTCCACTCTTTTCAAGA-TTGGGAACCA-A-GAACACAT-T
** * * * **
2907922 CGATACA-TAGGTATTTGTATCGAT-ACATTAAGGTTGACTTAGGCTACAAAGGTCAAAACCCTG
231 CCCTTCATTAGG-A----TA-C-ATGACATT---GATG-CTTTGG-T------GTCGCAA---T-
* ** * * * * *
2907985 AAAAG--TATCGATACACC-TTCAAATGTATCGATACAGATTGCATAGTATCGATACATTGTATC
274 AAAAGCTTTTCTTTCCACCGTT----T-T-T-GAT--AGAAT-CAAAGT-TTG-T-CACT-TA--
* * * * * ** * *
2908047 GATACATGACCAAATGTATCGAGA-ATGT-AT-C-GATACCGGTCATTGGCAGTAGCTTGGCAGT
323 AATA-A-GA-CAAA--CAT-GA-ATA-GTCATACTAAT-CC--CCATT--C-TTTTC-AGG-ATT
* * * * * * * * *
2908108 AGCCACCCTTAAC-T-GTTTGTATCGATACAATGCATCGATACATCCCAAAATGTATCGATACAT
372 AGGCACCATAAACATAGTCT-TCTC-AT--AA-G----GATACA--CGATATTG-A-CG---CTT
* * * ** ** ** * * * * *
2908171 TGGCTT-G---TAACGG-TTAGTAACGGCTATATTTTCAAATG-C-ATGTATCGATAC
421 TGGTTTCGCAAGAAAGGCTTTCTTCCCCCAAT-TTTTGAAAAGTCTAAGT-TCG-TGC
* * * * * * ** *
2908222 ATCCCAAATTGTATCGATACATTTACACA-GGATTGCATTA-AAATAAGCTCCA-ACAAGTC--A
1 --CTCAAA-TG-A--G--ACA---A-ACATGGATT-C--TAGTAATGATCTTCATTCATTTCGTG
* * ** * ** * ** ** *
2908282 ATAACGGCTAC---AAACTCCA--CCAATCAATCTG-CAACGGATATATCAGCATAGA-TGGCTA
51 ATTA-GGC-ACTGTAAAC-ACATTCCCCTCATTAGGATAAATGATAT-T--G-AT-GATTTTCTC
* * * ** * ** *** **
2908340 TA-AAT-AAGAGC--TTC-CAG--C-A----GC--AAAA-CACAAG-AAAAAACAAGCAAAAA-A
108 TAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA-AAGTTCATCCCTTG-AAAAAGA
* * * * * * * *****
2908388 CATCTAGCAATCAAAGTTTTCAAAGATCAAAGAGT-TTCA-TATTTTCAAGAGCTTTTGTTTTTA
171 CA---AGC-ATC-GA-TTCTC---G-T--GACAGTCTCCACTCTTTTCAAGA---TTGGGAACCA
* * ** * ** ** ** ***
2908451 TTGTCAATATTTTCAAAGC-TC-TTTTG-TATTTGATTTTGA-GCTTACAT-TC-CACA-AACAC
221 -AG--AACACATTC---CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA-ATAA-A-
***** * ** *** * * ***
2908509 CAGCCTAATTAGAGGCAATTGTTGTTTG-TA-AACTTTCTTTGTTTTGTTGAGGTTGTGTTCAAC
277 -AG-CT--TTTCTTTCCACCGTT-TTTGATAGAA---TCAAAG-TTTG-TCA-CTT-AAAT-AA-
* * * ** **** ** * **** *
2908572 CGA-AAA-GTGTTAAT-CTCTTAGGAATTTGGGGTATAGTTCTTGAAGAGATTAAGAG-GTTGTT
328 -GACAAACATG--AATAGTCATACTAA--T-CCCCATTCTT-TT-CAG-GATT-AG-GCACCATA
* * * *** * * ** * * *
2908633 ATCTTAGCCTTAAAAAGATAAGGATTGTA-AGGTTA-T-AC-CTTTGCCTT--AAAGGTAA-TCA
382 AACATAGTCTT---CTCATAAGGA---TACACGATATTGACGCTTTGGTTTCGCAA-GAAAGGC-
* ***** ** * * * ***
2908691 ATTTTTTTAGTGAA-TTGGGTAATCACTCGACAAGGAAGTG-
439 -TTTCTTCCCCCAATTTTTG-AA-AAGTC--TAAGTTCGTGC
** ** ** *** * * * *
2908731 -TCGAGGAGA-GAGGACGTAGGTGCCGATT-TGGACCAAACCTCTATAAATC-TTTTGTGA-TAA
1 CTC-A--A-ATGA-GACAAACATG--GATTCT--AGTAATGATCT-TCATTCATTTCGTGATTAG
* * *** ** * *** * * ** * *
2908791 GC-TTTTCTTC-C-TTAATCCTCTTTATCTTTTGAATTG-TTTTGTTCCAAAATCCTTCAAAACC
56 GCACTGTAAACACATT-CCCCTCATTA--GGAT-AAATGATATTG----ATGAT--TT----TCT
* ** * ** ** ***
2908852 CAAAAATTCGAAAAGAACCAATTCACCCCCCCTCTTG-GTTCATTATTCCTTGAGCTTTCAAAAG
107 CTAGCA-T-G--AA-AATC--TT------TTCT-TTGCCCT-ATT-TTCCTT-A-AAATC-AAAG
* * * *
2908916 TTCAT-CCTTGAAAAAGATAAGCATTGATTCTCATGACAGTCTCCACTCTTTTCAAGATCGGGAA
153 TTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAA
* * * * *
2908980 CCAAGATCACATTCCCTTCATTAGGATACAAGACATTGATGCTTCGGTGTTGCAAGAAAAGCTTT
218 CCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTT
* * * * * *
2909045 TCTTTTCACCATTTTTGATAAAATTAAAGTTTGACACTTATATAAGACAAACATGAATAGTCATA
283 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATA
* * * * * * ** *
2909110 CTAATTCCCTTTCCTCTCAGGATTAGGCACCATAAACATGGTTTTCTTTTAAGGATACATGATAT
348 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* * * * *
2909175 TGACGCTTTTGTTTCCCAAGAACGGCTTTCTTCCCACCAATTTTTGGAAAGTCTAAGTTCCTGC
413 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAATTTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * *
2909239 CTCAAATGAGACGAATATGGATTCTAGTAATGTTTTTCATTCTTTTCATGATTTGGC-CTTATAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCAC-TGTAA
* * * * * * *
2909303 ACACATTCCCCTCATTAGGAT-AAGGAATATTGATGATTTTCACTACCGTGGAAATCGTTCCTTT
65 ACACATTCCCCTCATTAGGATAAATG-ATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTT
* * *
2909367 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTCATGATAGT
129 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGT
* * *
2909432 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCAATAAGATACAGGACATTGATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * **
2909497 CTTTGGGGTTGCAATAAAGGCTTTTCTTTCAACCATTTTCGATAGAATCAAAGTTTACCACTTAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * * * *
2909562 ATAAGACAAACAAGAAAAGTCATACTAATCCCCATT-TTTTCAAGATTAAGCACAATAAATATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* ** * * * * * * * * *
2909626 TTTTCTCATAAGGGCACATGATATTGAC-ATTATCGTTTCCCATGAAAGACTTTTTTCCTACTAA
389 TCTTCTCATAAGGATACACGATATTGACGCTT-TGGTTTCGCAAGAAAGGCTTTCTTCC-CCCAA
* * *
2909690 TTTTTGCAAAGTCTATGTTCGTAC
452 TTTTTGAAAAGTCTAAGTTCGTGC
* * * ** * * * * *
2909714 CTCATATCAGACAAGA-ATTGATTCTAGTAAAAATCGTCCTTCATTTCGTAATTAGGCACTATGA
1 CTCAAATGAGACAA-ACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAA
** * * * *
2909778 ACACATTCTTCTGATTAGGATAAATGATATTGATGATTCTCTCTAGCATG-GAAT-TTTTTTTTG
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * * * *
2909841 -CCTATTTTCCTTATAATCAAAGTTTAGCCCTT-AGAAAAGATAAGCATCCACTCTCGTGACAAT
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGA-AAAAGACAAGCATCGATTCTCGTGACAGT
* * * * * *
2909904 CACCACTCTTTTCAAGATTGGGAACCACGAACAGATTCCCATCATTAGGATACATGACTTTGATT
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * * *
2909969 CTTTGGTGTCGCAATAAAGGCTTTTCTTTCAAACATTTTT-ACTAGAATCAAAGATTATCTCTCA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGA-TAGAATCAAAGTTTGTCACTTA
* ** * *
2910033 AATAAGACAAACATGAATAGTTATTTTAATCCCTATTCTTTTCAGGATTAGGCACCA-AAAGCAC
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA-CAT
* ** *
2910097 AGTGTTCTCATAAGG-TACATAATATTGACGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCCCCA
387 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCA
* *
2910161 AATTTTGAAAAGTCTGAA-TTCGTGA
451 ATTTTTGAAAAGTCT-AAGTTCGTGC
* * * ** * * *
2910186 CTCAAATAAGACAAACTTGGATTTTAGTGTTGATCTTCATTCATTTTGTAATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2910251 CACATTCTCCTTATTAGGATAAAGGATATTGACGATTTTCTCTAGCACGAAAAT-TGTTTCTTCG
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCT-TTTCTTTG
* * * * * *
2910315 CCCTATTTTGCTTTAAATTAGAGTTCAT-CTTTGGAAAAAGACAAGCATCGATTCTCGTGACAAT
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTT-GAAAAAGACAAGCATCGATTCTCGTGACAGT
* * ***
2910379 CTCCA-TGC-TTTCTAAGATTGGGAACCAAGAACATATTCCTTTCATTAGGATGGTTGACATTGA
194 CTCCACT-CTTTTC-AAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * *
2910442 TGCTTTGGTG-CTG-AATAAAGGCTTTTCTTTCCACTGTTTTTGATAAAATCAAAGTTTGTTAAT
257 TGCTTTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACT
* * * *
2910505 TAAATAAGACAAACATGAATAGTCATACTAATCCTCATTATTTTCAGGATTAGGCTCCATAAGCA
321 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
* * * *
2910570 TAGTCTTCTCACAAGGATACACGATATTGACGCTTTGGTTTCGTAAAAAAGGCTTTCTTTCCCCT
386 TAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCCC
*
2910635 AATTTTGGAAAAGTCTAAGTTCGTGC
450 AATTTTTGAAAAGTCTAAGTTCGTGC
* * * ** *
2910661 CTCAAATGAGAGAAACATGGATTCTAGTAATGATCTTCATTCCTTTTGTGATTAGGTGCTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2910726 CACATTCCCCTTATTAGGATAAAGGATATTGATGATTTTCTCTAGCAT-AGAAATCATTTCTTTT
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGA-AAATCTTTTCTTTG
* * * * * * * **
2910790 CCTTATTTTGCTTAAAATTATAGTTCAT-CCTTAGAAAAAAACAAACATC-AGTTGTCGTGGTAG
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTT-GAAAAAGACAAGCATCGA-TTCTCGTGACAG
* * * * * *
2910853 TCTCCACTCTTTCCAAGATTAGGAGCTAAGAACACATTCCCTTCATTAGGATATAAGACATTGAT
193 TCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * *
2910918 GCTTTGGTG-CTACAACAAAGGCTTTTCTTT-CACCCTTTTTTGATATAATCAAAGTTTATCTCT
258 GCTTTGGTGTC-GCAATAAAAGCTTTTCTTTCCA-CCGTTTTTGATAGAATCAAAGTTTGTCACT
* * * *
2910981 CAAATAAGACAAACATGAATAGTTATA-TAAAT-CCCATTCTTTTCAGGATTCGGCACCAAAAAC
321 TAAATAAGACAAACATGAATAGTCATACT-AATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * *
2911044 ACAATCTTCTCATAAGG-TACAGGATATTGATGCTTTGGTTTCGCATGAAAGGCTTCCTTCCCAC
385 ATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-C
* * *
2911108 TAATTTTTAAAAAGTCTAAGTTCGTGA
449 CAATTTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2911135 CTCAAATGAGACAAACTTGGATTCTAGTATTGACCTTCATTCATTTTGTGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2911200 CACATTCTCCAT-ATTACGATAAAGGATATTGATGATTTTCTCTAGCATGAAAATCGTTTCTTTG
66 CACATTC-CCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * * * **
2911264 CCCTATTTTGCTTAAAATTAATGTTCATCTCTAGAAAAAGACAAGCATTGATTCTTATGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* *
2911329 TCCACTCTTTTCAAGATTGGGAACCAAGAACATATTCCCTTCATTAGGATACTTGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
2911394 TTTGGT-TCCGCAATAAAAGCTTTTCTTTTCACTGTTTTTTATAGAATCAAAGTTTATCACTTAA
260 TTTGGTGT-CGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * *
2911458 ATAAGACAAACATGACTAGTCATACTAATCCCCATTTTTTTCAGTATTAGGCACCATAAACATTG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * **
2911523 TCTTCTCATAAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAGGCTTTCTTCCTGCAATT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAATT
* ***
2911588 TTTGAAAAGCCTAAGTTTAAGC
454 TTTGAAAAGTCTAAGTTCGTGC
* * *
2911610 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATAAGGCACTCTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
*
2911675 CACATTCTCCTCATTAGGATAAGA-GATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
66 CACATTCCCCTCATTAGGATAA-ATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * *
2911739 CCCTATTTTCCTTAAAATCAAAGTACATTCTTTGAAAAAGACAAGAATCGATTCTCATGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* *** * * *
2911804 TCCACTCTTTTCAAGATTTGGAACCAAGAACACATTTTTTTCATTAGGATAAATGATATTGATGA
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
** * * ** * ** * **
2911869 TTTTCTCTAGCAATGAAAATATTTTCTTTGC-CC-TATTTTCCTTAAAATCAAAGTTCATC-CTT
260 TTTGGTGTCGCAAT-AAAAGCTTTTCTTTCCACCGT-TTTT-GATAGAATCAAAGTTTGTCAC-T
* * ** * * * * * ** *
2911931 TAAAAAAGATAAGA-AT-AGATTCTCGTGA-TAGTCTCCACTCTTTCCAAAATT-GAGAACCA-A
321 TAAATAAGACAA-ACATGA-ATAGTCAT-ACTAATCCCCATTCTTTTCAGGATTAG-GCACCATA
* * * * * * ** * * *
2911991 GAACACATTC-CCTTCATTAGGATACATGACATTGGTGCTTTGGTGTCACAAGAAAAGCTTTTCT
382 -AACATAGTCTTC-TCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGC-TTTCT
* * ** * *
2912055 TTCCACTGTTTTTGATAAAATCAAAGTT--TGAC
444 TCCCCCAATTTTTGA-AAAGTCTAAGTTCGTG-C
* * * * * ** * ** **
2912087 ACTTAAATAAGACAAACATGAATAGTC-A-TACTAATCCCCATTCTTTTCAAGATTAGGCACCAT
1 -CTCAAATGAGACAAACATGGAT--TCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGT
* ** * * * * * ** **
2912150 AAACATAGTT-TTCTCATAAGGATACAA-GATATTGA-CATTTTGGTTTCGCAACAAAGGCTTTT
63 AAACACA-TTCCCCTCATTAGGATA-AATGATATTGATGATTTT-CTCTAGCATGAAAATCTTTT
* * * ** * * ** * * * * * *
2912212 -TTCGCACCAATTTT--TGAATTGTCTAAGTTCGTGAC-TCAAATGAGACAAACTTGGATTCTAG
125 CTTTGC-CCTATTTTCCTTAA-AATCAAAGTTCATCCCTTGAAA-AAGACAAGCATCGATTCTCG
** ** * ** * * * *
2912273 T-ATTGATCTTTATTCATTTT-GGGATTAGGCACTATA-AACACATTCTCC-TCATTAGGATAAA
187 TGACAG-TCTCCACTC-TTTTCAAGATTGGGAACCA-AGAACACATTC-CCTTCATTAGGATACA
* * * ** * * * * * * * *
2912334 GGATATTGATGATTTTCTCTAGC-ATGGAAATCGTTCCTTTGC-CC-TATTTTGCTTA-AATCAA
248 TGACATTGATGCTTTGGTGTCGCAAT-AAAAGCTTTTCTTTCCACCGT-TTTTG-ATAGAATCAA
** * * * ** * * * * * *
2912395 AGTTCAACTC-CTGAAA-AAGATAAGCATCG-ATTCTCGTGAC-CATCTCCACTATTTTCAAGAT
310 AGTT--TGTCACTTAAATAAGACAAACAT-GAATAGTCAT-ACTAATCCCCATTCTTTTCAGGAT
** * * *
2912456 T-GGCAACCA-AGAACACTTTTCCTTC-CCT-AGGATACAAGACT-TTGATGCTTTGGTGTT-GC
371 TAGGC-ACCATA-AACA-TAGT-CTTCTCATAAGGATACACGA-TATTGACGCTTTGGT-TTCGC
* * * * * * *
2912515 AATAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAA-TCAAAATTTGT-C
430 AAGAAAGGC-TTTC-TTCCCCCAATTTTTGA-A-AAGTCTAAGTTCGTGC
* * * * * ** *
2912562 ACTTAAATAAGACAAACATGAATAGTCATAGTAAT--CCCT-ATTTTTTTCAGT-ATTAGGCACC
1 -CTCAAATGAGACAAACATGGAT--TC-TAGTAATGATCTTCATTCATTTC-GTGATTAGGCACT
* * ** * * * * ** * * * *
2912623 ATAAACA-TTGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTGTCGCA-AAAAAGGC-TT
61 GTAAACACAT-TCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAA-TCTTT
* * * * * ** * * * * *
2912685 TC-TT-CCCGTAAGTTT--TGAAAAGCCTAAGTTTAAGCC-TCAAATGATACAAACATGGATTCT
124 TCTTTGCCC-T-ATTTTCCTTAAAA-TCAAAGTTCATCCCTTGAAA-AAGACAAGCATCGATTCT
* ** * * * ** * *
2912745 AGT-A-ATGATCTTTATTCATTTCATGATAAGGCACTCTA-AACACATTCTCC-TCATTAGGATA
185 CGTGACA-G-TCTCCACTCTTTTCAAGATTGGGAAC-CAAGAACACATTC-CCTTCATTAGGATA
* * * ** * * * * ** *
2912806 -AGAGATATTGATGATTTTCTCTAGC-ATGAAAATCTTTTCTTTGC-CC-TATTTTCCTTAAAAT
246 CA-TGACATTGATGCTTTGGTGTCGCAAT-AAAAGCTTTTCTTTCCACCGT-TTTT-GATAGAAT
* * * ** * * * *
2912867 CAAGGTACAT-TC-TTTGAAA-AAGACAAGA-ATTG-ATTCTCGTGAC-AGTCTCCACTCTTTTC
307 CAAAGT--TTGTCACTT-AAATAAGACAA-ACA-TGAATAGTCAT-ACTAATCCCCATTCTTTTC
* * * * * * * * * * ** *
2912926 AAGATTTGGAACCA-AGAACACATTTCTT-TTATTAGGATACATGACATTGATGCTTTGGTGACA
366 AGGATTAGGCACCATA-AACATA-GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCG
* * *** ** * * *
2912989 TAATAAAATATTTTCTTTCCATC-GTTTTTGATAGAA-ACCAAGTT--TGAC
429 CAA-GAAAGGCTTTC-TTCCCCCAATTTTTGA-A-AAGTCTAAGTTCGTG-C
* * * ** * *
2913037 ACTTAAATGAGACAAACATGGATAGTC-A-TACTAATCCCCATTCTTTTTAG-GATTAGGCACTG
1 -CTCAAATGAGACAAACATGGAT--TCTAGTAATGATCTTCATTC-ATTTCGTGATTAGGCACTG
* * * * ** * * * ** * * * **
2913099 TAAACATAGCTT--TCTCATAAGGATACACAAAATTGACGCTTTGGTTTTGCAAG-AAATGATTT
62 TAAACACA--TTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTT
*** * * * * * * * * *
2913161 CTACCCCCTAATTTT--TGAAAAGTCTAAGTTCGTGCC-TCAAATGAGACAAACATGGATTCTAG
125 CTTTGCCCT-ATTTTCCTTAAAA-TCAAAGTTCATCCCTTGAAA-AAGACAAGCATCGATTCTCG
** ** * * ** * * *
2913223 T-A-ATGATCTTTA-T-TTATTGCGTGATTAGGCACTGTA-AACACATTCCCCTCTTTAGGATAA
187 TGACA-G-TCTCCACTCTT-TT-CAAGATTGGGAAC-CAAGAACACATTCCCTTCATTAGGATAC
* * ** * * * * * ** *
2913283 ATGATATTGATGATTTTCTCTAG-TATAAAAATCTTTTCTTTTC-CC-TATTTTCCTTAAAATCA
247 ATGACATTGATGCTTTGGTGTCGCAAT-AAAAGCTTTTCTTTCCACCGT-TTTT-GATAGAATCA
** * * **
2913345 AAGTTCATC-CATTGAAA-AAGACAAGA-ATCG-AT--TCACGTGAC-AGTCTCCACACTTTTCA
309 AAGTTTGTCAC-TT-AAATAAGACAA-ACAT-GAATAGTCA--T-ACTAATCCCCATTCTTTTCA
* * * * * * * * * *
2913403 AGATTTGGAACCA-AGAACACATTCCCTT-T-ATTAGGATACATGACATTGATGCTTTGGTGTCG
367 GGATTAGGCACCATA-AACATAGT--CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCG
* * * * * **
2913465 CAATAAAAGCTTTTCTTCCCATC-GTTTTTGATAGAA-TCAAAGTTTAT-C
429 CAAGAAAGGC-TTTCTTCCC-CCAATTTTTGA-A-AAGTCTAAGTTCGTGC
* * * ** * * *
2913513 TTTCAAAT-ATGACAAACAT-GA--ATAGTCATGCTAATCCCCATTCTTTTCAAT-ATTACGCAC
1 -CTCAAATGA-GACAAACATGGATTCTAGTAATG---ATCTTCATTCATTTC-GTGATTAGGCAC
* * * ** * * * * * * * * * * **
2913573 TATAAACATAGTCTTCTTATAAGGATACACGATATTGACG-TTTTGGTTTCGTAAGAAAGGC-TT
60 TGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTT-CTCTAGCATGAAAATCTTT
** * * * * * * * * *
2913636 TCTTCCCCCCAATTTT--TGAAAAGTCTAAGTTCTTACC-TCAAATGAGACGAA--ATGGGTTCT
124 TCTT-TGCCCTATTTTCCTTAAAA-TCAAAGTTCATCCCTTGAAA-AAGAC-AAGCATCGATTCT
* * * * * * * ** ** ** *
2913696 AGT-A-ATGATCTTCATTCATTTCATGATTAGGCACTGTA-AACATGTTTTGC-TCATTAGGGTA
185 CGTGACA-G-TCTCCACTCTTTTCAAGATTGGGAAC-CAAGAACA-CATTCCCTTCATTAGGATA
* * * * * * * * * * *** ** * *
2913757 AATAATATTGATGATTCT-CTCTAGC-ATGGAAATCTTCTCTTTGCC-TTATTTTTCTTAAAATA
246 CATGACATTGATGCTT-TGGTGTCGCAAT-AAAAGCTTTTCTTT-CCACCGTTTTTGATAGAATC
** * * * * *
2913819 AAAGTTCATC-CATTGAAA-ACA-ACAAGCATCAAT--TCTAGTGAC-AGTCTCCACTCTTTTCA
308 AAAGTTTGTCAC-TT-AAATA-AGACAAACATGAATAGTC-A-T-ACTAATCCCCATTCTTTTCA
* ** * * * * * * *
2913878 AGATTAGAAACCA-AGAACATATTC-CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGC
367 GGATTAGGCACCATA-AACATAGTCTTC-TCATAAGGATACACGATATTGACGCTTTGGTTTCGC
* * ** * *
2913941 AATAAAAGCTTT-TTTTCCCATCATTTTTGATAGAA-TCAAAGTTTGT-C
430 AAGAAAGGCTTTCTTCCCCCA--ATTTTTGA-A-AAGTCTAAGTTCGTGC
* * * * * * * * * *
2913988 TCTAAAATAAAACAAACATGAATAGTCATAGTAAT--CCCT-ATTCTTTTTAG-GATTACGCACC
1 -CTCAAATGAGACAAACATGGAT--TC-TAGTAATGATCTTCATTC-ATTTCGTGATTAGGCACT
* * * ** * * * * * ** * * * ** *
2914049 ATAAACATAGTCTTCTCATAAGGATACACGATATTAATGCTTTGGTTTTGCAAGAAAGGC-TTTA
61 GTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTC
** * * * * * * * * *
2914113 TTCCCACCAATTTT--TGAAAAGT-ATAAGTTCGTGCC-TCAAATGAA-ACAAACTTTGATTCTA
126 TTTGC-CCTATTTTCCTTAAAA-TCA-AAGTTCATCCCTTGAAA--AAGACAAGCATCGATTCTC
* ** * ** ** * ** ** * *
2914173 GT-AAAGATCTTTATTCGTTTT-GTGATTACGCATTATCAACACAATCTCC-TCATTAGGATAAA
186 GTGACAG-TCTCCACTC-TTTTCAAGATTGGGAACCAAGAACACATTC-CCTTCATTAGGATACA
* * * * ** * * * * * ** *
2914235 GGATATTAATGATTTTCTCTAGC-ATGGAAATCATTTCTTTCC-CC-TATTTTCCTTAAAATCAA
248 TGACATTGATGCTTTGGTGTCGCAAT-AAAAGCTTTTCTTTCCACCGT-TTTT-GATAGAATCAA
* * * * * * *
2914297 AGTTCT-TCCCTTGAAA-AAGACAAGCATCGATTCTTGT-A-AC-AGTCTCCACTT-TTTTCAAG
310 AGTT-TGTCACTT-AAATAAGACAAACAT-GA--ATAGTCATACTAATCCCCA-TTCTTTTCAGG
* ** * * * * * * *
2914356 ATT-GAGAAGTA-AGAACACATTC-TCTTCATTAGGATACATGACATTGACGCTTTGGTGTCGTA
369 ATTAG-GCACCATA-AACATAGTCTTC-TCATAAGGATACACGATATTGACGCTTTGGTTTCGCA
* * * ** * * * **
2914418 ATAAAAGCTTTTTTTCCATC-ATTCTTTCTAGAA-TCAAAGTTTAT-C
431 AGAAAGGC-TTTCTTCCCCCAATT-TTT-GAAAAGTCTAAGTTCGTGC
* * * * * * ** *
2914463 TCTCAAATAAGACAAACATGAATAGTC-A-TACTAATC-CCTATTC-TTTTGATGATTAACCACC
1 -CTCAAATGAGACAAACATGGAT--TCTAGTAATGATCTTC-ATTCATTTCG-TGATTAGGCACT
* * ** * * * * * * *
2914524 GTAAACATAGTCTTCTCATAAGGATATATGATATTGACGCTTTGGTTTC-A-CAAGAAAGTCTTT
61 GTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTT--TCTCTAGCATGAAAATCTTT
*** * * * * * * * *
2914587 GT-TCCCCCCAATTTT--TTAAAAGTCTAAG-TCTATGCC-TCAAAGGAGACAAACGTGGATTCT
124 -TCTTTGCCCTATTTTCCTTAAAA-TCAAAGTTC-ATCCCTTGAAA-AAGACAAGCATCGATTCT
* * ** * * * * * *
2914647 AGT-A-ATGATCTTCGTTCATTTCAGGATTAGG---CATAGTAAACACTTTCGAC-TCTTTAGGA
185 CGTGACA-G-TCTCCACTCTTTTCAAGATTGGGAACCA-AG--AACACATTC-CCTTCATTAGGA
* * * * * * * * * **** *
2914706 CAAATAATATTGATGATTT--TCTCG-AGCATAAAAATCTTTTCTTAGCC-CTGTTTACCTTAAA
244 TACATGACATTGATGCTTTGGTGTCGCA--AT-AAAAGCTTTTCTT-TCCACCGTTTTTGATAGA
* * * * * * * * * *
2914767 ATCAGAGTTTATC-CATT-GATAAAGACAAGCATCG-ATTGCTGAGAC-AGTCTCCACTCTTTTC
305 ATCAAAGTTTGTCAC-TTAAAT-AAGACAAACAT-GAATAG-TCATACTAATCCCCATTCTTTTC
* * * * * * * * * *
2914828 AAGATT-GAGAACCA-AGAACACATTC-CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTC
366 AGGATTAG-GCACCATA-AACATAGTCTTC-TCATAAGGATACACGATATTGACGCTTTGGTTTC
* * ** * * * * * * **
2914890 ACAGGAAAAACTTTTCTTTCCACC-GTTTTTTATAAAATCAAAGTTTGACAC
428 GCAAGAAAGGC-TTTC-TTCCCCCAATTTTTGA-AAAGTCTAAGTTCG-TGC
* ** * * * * ** **
2914941 CT-AAATAAGACAAACATTAATAGTC-A-TACTAATCCTCATTCTTTTCAAGATTAGGCACCATA
1 CTCAAATGAGACAAACATGGAT--TCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTA
* ** * * * * ** * * * **
2915003 AACATAGTT-TTCTTA-TAGGGA-AATACGATACTGA-CACTTTGGTTTTGCAAGAAAGGC-TTT
64 AACACA-TTCCCCTCATTA-GGATAA-ATGATATTGATGA-TTTTCTCTAGCATGAAAATCTTTT
** * * * * * * * * *
2915063 CTTCCCCCCAATTTT--TGAAATGTCTAAGTTCGA-GCCTT-AAATGAGACAAACATGGATTCTA
125 CTT-TGCCCTATTTTCCTTAAA-ATCAAAGTTC-ATCCCTTGAAA-AAGACAAGCATCGATTCTC
** * * * * * * * ** * *
2915124 GAAACAATCTTCATTCATTTGATGA-TGAGGCACTGTA-AACACATTCCCCTCATTAGGATAAAT
186 GTGACAGTCTCCACTCTTTTCAAGATTG-GGAAC-CAAGAACACATTCCCTTCATTAGGATACAT
* * * * * * * * ** *
2915187 GATATTGATGATTT-TTCTAGC-ATGGAAATCTTTTCTTTTC-CC-TATTTTCCTTAAAATCAAA
249 GACATTGATGCTTTGGTGTCGCAAT-AAAAGCTTTTCTTTCCACCGT-TTTT-GATAGAATCAAA
** * * ** * * * *
2915248 GTTCATCCCTTGAAA-AGGACAAGA-ATCG-ATTCTCATGAC-AATCTCCACTCTTTCCAAGATT
311 GTTTGTCACTT-AAATAAGACAA-ACAT-GAATAGTCAT-ACTAATCCCCATTCTTTTCAGGATT
* * ** * * * * * * * * * *
2915309 GGGAACCAGGAACACATTC-GCTTCATTAGGATACATGACATTCATGCTTTGGTGTCGCAATAAA
372 AGGCACCATAAACATAGTCTTC-TCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAA
** * * *
2915373 GGCTTTTCTTTCAACC-GTTTTTGATAGAA-TCAAAGTTTGT-C
436 GGC-TTTC-TTCCCCCAATTTTTGA-A-AAGTCTAAGTTCGTGC
* * * * * * * ** * *
2915414 TTTCGAATAAGACCAATAT-GA--ATAGTCATGCTAATCCCCATTCTTTTCAGT-ATTAGGCACC
1 -CTCAAATGAGACAAACATGGATTCTAGTAATG---ATCTTCATTCATTTC-GTGATTAGGCACT
* * ** * * * ** * * * * ** * * * **
2915475 ATAAACA-TTGTCTTCTTATAAGGATACACAATGTTAATGCTCTGGTATCGCAAGAAAGGC-TTT
61 GTAAACACAT-TCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTT
* * * * * * *
2915538 C-TT-CCTTCTAATTTT--TGGAAAGTCTATGTTCTTGCC-T-AAAATGAGACGAA-CATGGATT
125 CTTTGCC--CT-ATTTTCCT-TAAAATCAAAGTTCATCCCTTGAAAA--AGAC-AAGCATCGATT
* * * * ** * **** *
2915596 CTTGT-A-ATGATCTTCATTCATTTCGTGATTAGGCATTGTA-AACACATTCCCTTCATTCGGAT
183 CTCGTGACA-G-TCTCCACTCTTTTCAAGATT-GGGAACCAAGAACACATTCCCTTCATTAGGAT
* * * * * * * * * * * ** *** *
2915658 AAATAATATTGATGATTCT-CTCTAG-TATGGAAATCTTTTCTTTGGCA-TATTTTCCTTAAAAT
245 ACATGACATTGATGCTT-TGGTGTCGCAAT-AAAAGCTTTTCTTT-CCACCGTTTTTGATAGAAT
** * * * * * ** * *
2915720 CAAAGTTCATCCCTTGAAA-AAGACAAGCCTCG-ATTGTCATGAC-AGTTTCCACTCTTTTCAAG
307 CAAAGTTTGTCACTT-AAATAAGACAAACAT-GAATAGTCAT-ACTAATCCCCATTCTTTTCAGG
* * * * * * * * * *
2915782 TTTGGGAACCA-AGAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTT-GCA
369 ATTAGGCACCATA-AACATAGTCTTC-TCATAAGGATACACGATATTGACGCTTTGGT-TTCGCA
* * *** * * *
2915844 GGAAAGGATTTTCTTTCAATC-GTTTTTGATAGAA-TCAAAGTTTGT-C
431 AGAAAGG-CTTTC-TTCCCCCAATTTTTGA-A-AAGTCTAAGTTCGTGC
* * * * * ** * * *
2915890 TCTGAAATAAGACAAACAT-TAATCGTCA-TACT-AGTCCCCATTCTTTTCAG-GACTAGGCACC
1 -CTCAAATGAGACAAACATGGATTC-T-AGTAATGA-TCTTCATTCATTTC-GTGATTAGGCACT
* * * ** ** * ** * * ** * * * **
2915951 ATAAACATAGTCTTCTCAAAAGGATACACAATATTGACGCTTTGGTTTTGCAAGAAAGGC-TTTC
61 GTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTC
* * ** * * * * * *
2916015 TTT-CTCCTAATTTT--TGCAAAGTTTAAGTTCGTGCCTT-AAATGAGACAAACATAG-TTCTAG
126 TTTGC-CCT-ATTTTCCT-TAAAATCAAAGTTCATCCCTTGAAA-AAGACAAGCATCGATTCTCG
** * * * * * **** **
2916075 AAATTA-TCTTCATTCATTTT-AGGATTAGGCATTGTA-AACACATTCCCCCCATTAGGATA-AC
187 TGA-CAGTCTCCACTC-TTTTCAAGATT-GGGAACCAAGAACACATTCCCTTCATTAGGATACA-
* * * ** * * * ** * *
2916136 TGATATTGATGTCTTT-CTCTATC-ATGAAAATCTTTTTTTTTGC-CC-TATTTTCCTTAAAAGC
248 TGACATTGATG-CTTTGGTGTCGCAAT-AAAAGC-TTTTCTTTCCACCGT-TTTT-GATAGAATC
** * * * * ** ** * * * * *
2916197 AAAGTTCATCCCTTGAAA-ACGATAAGCATCG-ATTCTGGTGAC-AGTCTCCACTCTTTTTAAGA
308 AAAGTTTGTCACTT-AAATAAGACAAACAT-GAATAGTCAT-ACTAATCCCCATTCTTTTCAGGA
* * * * * ** * * * *
2916259 TTGGGAACCA-AGAACACATTC-GCTTCATTAA-GATACATAACATTAATGCTTTGGTGTCGCAA
370 TTAGGCACCATA-AACATAGTCTTC-TCA-TAAGGATACACGATATTGACGCTTTGGTTTCGCAA
* * ** * * * *
2916321 TAAAAGCTTTTCTTCCTATC-GTTTTGGTAGAA-TCAAAGTT--TGAC
432 GAAAGGC-TTTCTTCC-CCCAATTTTTG-AAAAGTCTAAGTTCGTG-C
* * * * * * * * ** *
2916365 AATTAAATAAGGCAAACATGAACAATCATACTAATCCCCATCAATAAGGATACACGATATT-GAT
1 -CTCAAATGAGACAAACATG--GATTC-TAGTAAT---GATC--T--TCAT--TC-AT-TTCG-T
* * * * ** * * ** * * * *
2916429 GCTTTGGTTTCGCAAG-AAAGGCTTTCTACCCCCTAATTTTTGA-AAA-G-T-CT-AAGCTCCTA
50 GATTAGG---CAC-TGTAAACAC-AT-T--CCCCTCA-TTAGGATAAATGATATTGATGAT--TT
* * *** ** *** * * * ** ** * *
2916488 CCTCAAATGAG-ATGAACATGGATTC-GAGTAATGATCTTCATTCATTTC-GTGCTT-AGGCACT
104 TCTC---T-AGCATGAAAATCTTTTCTTTGCCCT-ATTTTCCTTAAAATCAAAG-TTCA-TCCCT
* * * **** * ** * * * * ** * * * * *
2916549 TTAAACACATTCCCCTC-ATT-AGGATAAATAATATTGATTATTTTCTCTAGCA-TGGAAATCAT
162 TGAAAAAGACAAGCATCGATTCTCG-T-GACAGTCTCCACT-CTTT-TCAAG-ATTGGGAACCA-
*** * * * * * * * ** * * * ***
2916611 TTATTTGCCCTATTTTCCTTAAAATCAAAGTGCATCCCTTGAAAAAGAAAGCATTGAT-TC-TTG
221 --A-GAACAC-A-TTCCCTT--CAT--TAG-G-AT-ACATGACATTG-ATGCTTTGGTGTCGCAA
* * * * * * * * * * *
2916674 TGACAGTCTGCTCTCTTTTCA-AGATTTGGA-ACCAAAGCCACA-TTCCCT-TC-CTTAGGATAC
273 TAAAAG-CT--TTTCTTTCCACCGTTTTTGATA--GAA-TCAAAGTT---TGTCACTTA-AATA-
*** ** * * * *** ** * ** ** * * * *
2916734 ATGACATTGATGCTTTGATGCCACAATAAAAGCTTTTCTTTCCACTATTTTTG-A-TAGAATCAA
327 A-GACAAACATG-AAT-A-GTCATACTAATCCCCATTCTTTTCAGGA-TTAGGCACCATAAACAT
* * * * * * ** ** * *
2916797 AGT-TTGACACTTAAATAAGACAAACATGGATACTCGTACTAATCTTATTCTTT-ATAGGATTAG
387 AGTCTT----C-T-CATAAG-GATACA-CGATA-TTG-AC---GCTT-TGGTTTCGCAAGA-AAG
** * *** * * * * * *
2916860 GC-ACCGT-AAACATAGTTTTCTCATAAGGACATATGATATTGAT-A
437 GCTTTCTTCCCCCA-A-TTTT-TGA-AAAGTC-TAAG-T-TCG-TGC
**** *** * * * * * * * * **
2916904 CTTTGGTTTCACAAGA-AAGGCTGTTGTCCGCCCAAT-AT-TTGAAAGTCAAAGTTCGTGCCT--
1 CTCAAATGAGACAA-ACATGG--ATTCT-AG--TAATGATCTT--CATTC--ATTTCGTGATTAG
* * * **** * * * * *
2916964 -CAAATG-AGACAAATATGGATTC--TA--CT-AATGATCTTCAT-TTATTTCGTGATTAGGCAC
56 GC-ACTGTAAACACAT-TCCCCTCATTAGGATAAATGATATTGATGAT-TTTC-T--CTA-GCA-
* ** * ** *
2917021 TGCAAACA-CATTCCCCTCATTAGGATAAAGACATTGATGATTTTCTCTAGCATGGAAATCGTTC
113 TG-AAA-ATC-TT---TTC-TT----T---G-CCCT-AT--TTTCCT-TAAAAT-CAAA--GTT-
* ** * * *** *
2917085 CCTTGCCCTATTTTGCTTAAA-TCAAAGTTCATCCATTGAAGAAGACAAGCATCGATTCTCATGA
155 -CAT-CCC----TTG-AAAAAGAC-AAG--CATCGATTCTCG-TGACA-G--TC---TC-C---A
* * * ** ** *
2917149 CAGTTCCCACTATTTTGAAGATTGGAAACCAAGAATAC-TTCCCCTTCCCTAAAATACATGATAT
199 C---T----C--TTTTCAAGATTGGGAACCAAGAACACATT-CCCTTCATTAGGATACATGACAT
* * * * * *
2917213 TGATGCTTTGGTGTCACAATAAAAGCTTTTTTTTTCCACCATTTTTTATAGAATCAAAATTTTTC
254 TGATGCTTTGGTGTCGCAATAAAAGC-TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * * *
2917278 ACTTAAATAAGACAAACATGAATAGTCCTAGC-AATCCCTATTCTTTTCAAGATTAGGCACCGTA
318 ACTTAAATAAGACAAACATGAATAGTCATA-CTAATCCCCATTCTTTTCAGGATTAGGCACCATA
* * * * *
2917342 AACATTGTCTTCACATAAGGATACATGATATTGATGCTTTGGTATCGCAAGAAAGGCTTTCTTCC
382 AACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
* *
2917407 CCCTAATTTTTGAAAAGTCTAAGTTTGAGC
447 CCC-AATTTTTGAAAAGTCTAAGTTCGTGC
* ** *
2917437 CTCAAATGGGACAAACATGGATTCTAGTAATGATCTTCATTCATTTAATGATGAGGCACTG-AAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2917501 -ACGTTATCCCATCATTAGGATAAATGATATTGACGATTTTCTCTAGCATGGAAATCTTTTCTTT
66 CAC-AT-TCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTT
* * * * *
2917565 TCCCTATTTTTCTTAAAATCAAAGTTCATCCCCTGAAAAAGACAAGAATCGATTCTCGTGACAAT
129 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGT
* * * * * * *
2917630 C-CCACACTTTTCAAGATTGGGAACCAAGACCACATTCCCTTCATTAAGACACACGACTTTAATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* ** *
2917694 CTTTGGTGTCGCAATAAAGGCTTTT-TTTCTTCCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * *
2917758 ACAAGAAAAACATTAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * *
2917823 TCTTTTCATAAGGATACACAATATTAACGCTTTGGTTTCACAAGAAAGACTTTCTTCCGCCCAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-CCCAAT
* *
2917888 TTTTGAAAAGTCTAACTTCTTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2917911 CTCAAATGAGACGAACATTGATTCTAGTAATGTTCTTCATTCATTTCGAGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * ** * *
2917976 CACATTTCCCTCATCAGGATAAATCATATTGATGATTTTCTCTAGTGTGGAAATCTTTTCTTTGG
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
** * * * * * *
2918041 CCTACCTTCCATAAAATCAAAGTTCATCCGTTGGAAAAGATATGCATCGATTCTCGTGATAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2918106 CCACTCTTTCCAAGAATAGGAACCATA-AACACATTTCCTTCATTAGGATACATGACATTGATGC
196 CCACTCTTTTCAAGATTGGGAACCA-AGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * ** * *
2918170 TTTGTTGTCGCATTAAAAGCTTTTCTTCCCATTGTTTCT-AGTAGAATCAAAGTTTGGCACTTAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGA-TAGAATCAAAGTTTGTCACTTAA
* * ** * *
2918234 ATAAGAAAAACATGAATAGTTATACTAATCGTCATTATTTTCAAGATTAGGCACCATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * *
2918299 TCTTCTCATAATGATACATGATATTGACGCTTTGGTTACGCAAGAAAGTCTTTTTTCCCCCTAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AAT
* *
2918364 TTTTGACAAGTCTAAGTTTGTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * **
2918387 CTCAAATGAGACAAACTTTGATTCTAGTAATGATCTTCATTTATTTCGTGATTAGGCACTACAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2918452 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTTTAGAATGAAAATATTTTATTT-C
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * *
2918516 TCTATTTTCCTTAAAATCAAAGCTCATCCCTTGAAAAAGATAAGCATCGATTCTCGTGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * *
2918581 CCATTCTTTACAAGATTGGGAACCAAGAACACATTCCCTTCATTAAGATACATGACATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * ** * * *
2918646 TTGGTGTCGCAATTAAAGCTTTTCTTCCCATTGTTTCT-AGTAGAATCAAAGTTTGGCTCTTAAA
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGA-TAGAATCAAAGTTTGTCACTTAAA
** * * * *
2918710 TAAGACAAACATGAGCAGTCTTACTAATCCCCAATATTTTCTA-GATTAGGTACCATAAACATAG
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAG
* * * *
2918774 TCTTCGT-AGAATGATACACGATATTGACACTTTGGTTTCGCAAGAAGGGCTTTCTTCCCCCAAT
389 TCTTC-TCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAAT
*
2918838 TTTTGAAAAGTCTAAGTTTGTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * **
2918861 CTCAAATGAGACAAACTTTGATTCTAGTAATGATCTTCATTTATTTCGTGATTAGGCACTACAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2918926 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTTTAGAATGAAAATATTTTATTT-C
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * *
2918990 TCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTCATGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * * *
2919055 CCACTCTTTTCAAGATTGTGAACCATA-AACACATTCCCTTCAATAGGATACAAGACTTTAATGC
196 CCACTCTTTTCAAGATTGGGAACCA-AGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * * *
2919119 TTTGGTGTTGTAAGAAAAGCTTTTCTTTTCACCATTTTTGATGGAATTAAAGTTTGACACTTAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * *
2919184 TAAGACAAATATGAATAGTCATACGAATCCCCTTTCCTTTCAGGATTAGGCACCATAAACATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * * * *
2919249 TTTCTTATAAGGATATACGATATTGATGTTTTTGTTTC-CTAAGAATGGCTTTCTTCCCACCAAT
390 CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGC-AAGAAAGGCTTTCTTCCC-CCAAT
* *
2919313 TTTCGAAAAGTCTAAGTTCCTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * *
2919336 CTCAAATAAGACGAACATGGATTCTAGTAATGTTCTTCATTCATTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * *
2919401 CAAATTCGCCTCATTAGGATAAA-GAATATTGATGATTTTCTCCAACTTGGAAATCGTTTCTTTG
66 CACATTCCCCTCATTAGGATAAATG-ATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * ** ** ** *
2919465 CCCTGTTTTCCTGAAAATCAAAGTTCATCCCTTGAAAAAGGTAAGCATAAATTCTCAAGATAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * *
2919530 TCCACTCTTTTCAAGATTGGG-ACCAAGAACGCATTCTCTTCAATAGGATACAGGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* ** * * * **
2919594 TTTGGGGTTACAATAAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTACCACTTAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * * *
2919659 TAAGACAAACATGAAAAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCACAATAAATATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
** *** * * * * *
2919724 CTTCTCATAAGGGCACACGATATT-AAAATTATCGTTTTGCAAGAAAGACTTTTTTCCCACTAAT
390 CTTCTCATAAGGATACACGATATTGACGCTT-TGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAAT
* * *
2919788 TTTTGCAAAGTCTATGTTCGTAC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * *
2919811 CACATATCAGATAAGA-ATTGATTCTAGTAATAATCGTTC-TTCATTTCATGATTAGGCACTATA
1 CTCAAATGAGACAA-ACATGGATTCTAGTAATGATC-TTCATTCATTTCGTGATTAGGCACTGTA
* * * * * *
2919874 AACACATTCTCCTGATAAGGTTAAATGATATTGATGATTCTCTCTAGCATGGAAAT-TTTT-TTT
64 AACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTT
* * * * * *
2919937 G-CCTATTTTCCTTATAATCAAAGTTTATCCCAT-AGAAAAGACAAGCATCCACTCTCGTGACAA
129 GCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGA-AAAAGACAAGCATCGATTCTCGTGACAG
* *
2920000 TCACCACTCTTTTCAAGATTGAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
193 TCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * * * * * * * * *
2920065 TCGTTAGTGCCGCAACAAAGGCTTTTCTTTCAATCATTTTTGCTAGAATCAAAGTTTATCTCTCA
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* * * * * * * * *
2920130 AATAAGACAAACATTAATAGTTATATTAGTCCCTACTCTTTTCAAGATTAGGCACCAAAAAAATA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * *
2920195 GTGTTCTCATAAGG-TACATGATATTGATGCTTTGGTTTCGCAAGAAAGACTTTCTTCCCACCAA
388 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAA
* * * *
2920259 TTTTGGAAAAGTCTAAATTCATGA
452 TTTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * *
2920283 CTCAAATGAGGCAAACATTGATTCTAGTAATGTTCTTCACTCATATCATAATTAGGTACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * ** *
2920348 CACATTCCCTTCATCAGGATAAATAATATTGATAATTTTTTCTAGTGTGGAAATCTTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2920413 TCTATTTTCTTTAAAATCAAAGTACATCCCTTGAAAAAGATAAGCATCGATTCTCGTGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2920478 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTTATTAGGATACACGACAATGATGTT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* ** * * *
2920543 TTGGTGTCGCAATAAAAGCTTTTCTTCCCATTGTTTCTGGTAGAATCAAAGTTTGGCACTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * * *
2920608 AAGACAAACATGAATAGTCTTACTAATCCCCATTATTTTAAGTATTAGGCACCATAGACATAGTC
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * *
2920673 ATTGT-AGAAAGG-TAC-CTGATATTGACACTTTGGTTTCGCAAGAAGGGCTTTCTTCCCCTAAT
391 -TTCTCA-TAAGGATACAC-GATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAAT
* * *
2920735 GTTTGAAGAGTCTAAGTTCATGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2920758 CTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTTATTTCGTGATTAGCCTCTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* *
2920823 CACATTCCCCTCACTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTATTT-C
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2920887 CCTATTTTGCTTAAAATCAAAGTTCATCCGC-TGAAAAAGATAAGCATCGATTCTCATGACAATC
131 CCTATTTTCCTTAAAATCAAAGTTCATCC-CTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2920951 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTGGGATACAAGACACTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * *
2921016 TTTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCATTTTTGATAGAATTAAAGTTTGACACTTAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * *
2921081 TAAGACAAACATGAATAGTCATACTAATCCCCTTTCCTTTCAAGATTAGGCACCATAAACATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * * * *
2921146 TTTCTTATAAGGATACACGATATTGATGCTTTTGTTTCCCAAGAACGGCTTTCTTCCCATCAATT
390 CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAATT
**
2921211 TTTGAAAAGTCTAAGTTCCCGC
454 TTTGAAAAGTCTAAGTTCGTGC
* * * *
2921233 CTCAAATGAGACGAACATGGATTCTAGTAATGTTCTTTATTCGTTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2921298 CACATTCCCCTCATTAGGATAAATAATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTAC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
** * * * * * ** *
2921363 CCTATTTTGGTTAAAATTAATGTTCATCCCTTGATAAAGATAAGCATCGATTCTCATGATTGTCG
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * ** * * *
2921428 CCACTCTTTTCAAGATTGGGAACCAAGATCGCATTCCCTTCAAAAGGACACAGGAGATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * **
2921493 TTGGGGTTGCAATAAAGGCTTTT-TTTTCATCCCTTTTCGATAGAATCAAA--TTACCACTTAAA
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCA-CCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* ** * *
2921555 TAAGACAAACATGAAAAGTCATACCGATCCCCATTCTTTTCAAGATTAGGCACAATAAACATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * * ** * * *
2921620 CTTCTTAGAA-GAGCACATGATATTGACAATATT-GTTTCGCAAGAAAGGCCTTTTTTCCACTAA
390 CTTCTCATAAGGA-TACACGATATTGACGCT-TTGGTTTCGCAAGAAAGG-CTTTCTTCCCCCAA
* * *
2921683 TTTTTGTAAAGTCTATGTTCGTAC
452 TTTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * * *
2921707 CTCATATTAGACAAGA-ATTGATTCTAGTAATAATCGTCCTTTATTTCGTGACTAGGCACTATAA
1 CTCAAATGAGACAA-ACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAA
* * * *
2921771 ACACATTCTCCTGATTAGGATAAATGATATTGATGATTCTCTCTAGCATGAAAATCGTTTCTTTG
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * *
2921836 CTCTATTTTCCTTAAAATCAAAGTACGTCCCTTGAAAAAGATAAGCATCGATTCTCGTGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* *
2921901 TCCACTCTTTTCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACAATGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
** * * *
2921966 TTTGGTGTCGCAATAAAAGCTTTTC-TTCTCATTGTTTATGGTAGAATCAAAGTTTGGCACTTAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTC-CACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * * *
2922030 ATAAGACAAACATGAACAGTCTTACTAATCCCCATTATTTTTAGGATTAGGCACCATAACCATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * * * **
2922095 TCTT-TGTAGAATGATACACGATGTTGACACTTTGTTTTCGCAAGAAGGGCTTTCTTCCCCTTAT
389 TCTTCT-CATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAAT
*
2922159 TTTTGAAAAGTCTAAGTTCATGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * *
2922182 ATCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTTATTTTGTGATTGGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* *
2922247 CACATTCCCCTCATTAGGATAAACGATATTGATGATTTTCTCTAGCATGAAAATCTTTTATTT-C
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * *
2922311 CCTATTTTGCTTAAAATCAAAGTTCATTCCTTAAAAAAGATAAGCATCGATTCTCATGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * * *
2922376 CTACTCTTTCCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGATAGTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * * * *
2922441 TTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCATTTTCGATAGAATTAAAGTATGACACTCAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * * *
2922506 ATGACAAACATGAATAGTCATACTAGTCCCCATTCCTTTCAGGGTTAGGCACCATAAACATAGTT
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * *
2922571 TTCTTATAAGGATACACGATATTGACGCTCTT-ATTTCCCAAGAACGGCTGTCTTCTCACCAATT
391 TTCTCATAAGGATACACGATATTGACGCT-TTGGTTTCGCAAGAAAGGCTTTCTTC-CCCCAATT
*
2922635 TTTGAAAAGTCTAAGTTCCTGC
454 TTTGAAAAGTCTAAGTTCGTGC
* * * * * *
2922657 CTCAAATTAGACGAACATGGGTTCTAGTAATGTTCTTCATTCGTTTCGTGATTAGACACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * *
2922722 CACATTCCCCTTATTAGGATAAATAACATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * *
2922787 CCTATTTTGCTTAAAATCAAAGTTCATCCCTTGGAAAAGATAGGCATCGATTCTCATCACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2922852 CCACTCTTTTGAAGATTGGGAACCAATAACACATTCCCTTCATTAGGATACAAGACAATGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
2922917 TTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCTTTTTTGATAGAATCAAAGTTTGACCCTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2922982 AAGACAAACATGGATAGTCATACTAATCCCCTTTCCTTTCAGGATTAGGCACCATAAACATAGTT
326 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
* * * * * *
2923047 TTCTTATAAGGATACACGATATTGATGCTTTTGTTTCCCAAGAACGGCTTTCTTACCCCAATTTT
391 TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAATTTT
* *
2923112 TGTAAAGTCTAAGTTCCTGC
456 TGAAAAGTCTAAGTTCGTGC
* * * * * *
2923132 GTCAAATGAGACGAACATGGATTCTAGTAATGTTTTTCAATT-GTTTCATGATTAGGCACTGTAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC-ATTCATTTCGTGATTAGGCACTGTAA
* * * * * *
2923196 AAACATTCCCCTTATTAGGATAAATAATATTGAGGATTTTCTCTAGCATGGAAATCGTTTCTTTG
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * * *
2923261 CCCAATTTTGCTTAAAATCAAAGTTTATCCCTTGAAAAAGATAAGCATCGATTCTCATGATAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * **
2923326 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCAGTAGGATACAGGTTATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * * *
2923391 TTTGGGGTTGCAATAAATGCTTTTTTTTCAACCGTTTTCGATAGAATCAAATTTTGCCACTTAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * * * *
2923456 CAAGACAAACATTAAAAGTCATACTAATCCCTATTCTTTTCAAGG-TTAGGCACAAGACAAACAT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCAC--CATAAACAT
* * * * * * * * * *
2923520 AGTCTTTTTAGAA-GAGCACACAATATTGAC-ATTATCGTTTCAG-AAGAAATGCCTTTTTTCCA
387 AGTCTTCTCATAAGGA-TACACGATATTGACGCTT-TGGTTTC-GCAAGAAA-GGCTTTCTTCCC
* * * * *
2923582 CTAATTTTTTGCAAAGTCTATGCTCGTAC
448 CCAA-TTTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * * *
2923611 CTCATATTAGACAAGA-ATTGATTCTAGTAGTAATCATCCTTTATTTCGTGATTAGGCACTATAA
1 CTCAAATGAGACAA-ACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAA
* * * * * *
2923675 ACAAATTCTCCTGATTAGGATAAATGATATTGATGATTCTCTCTAGCATGGAAATC--TTCTTTT
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * ** *
2923738 ACCTATTTTCCTTATAATCAAAGTTCATCCC-TCAGAAAAGACAAGCATCCGCTT-TAATGACAA
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGA-AAAAGACAAGCAT-CGATTCTCGTGACAG
* * * *
2923801 T-TAGCGCTCTTTTCAAGATTGGGAACCTAGAACACATTCCCTTCATTAGGATACATGACACTGA
193 TCT-CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
** * ** * ** *** * *
2923865 TTATTTGGTGCCATAATAAAGGCTTTTCTTTTGAATAATTTTTGATAGAATCAAAGTTTATCTCT
257 TGCTTTGGTGTCGCAATAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACT
* * * * * *
2923930 CAAATAAGACAAACATGAATAGTTATATTAATCCCCATTCTTTTCTGGATTA-GCATCAAAAACA
321 TAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACA
* *
2923994 CAGTGC-TCTCTTAAGG-TACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCTC
386 TAGT-CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-C
* * *
2924057 CAATTTTTGAAAAGTCTAAATTCATGA
449 CAATTTTTGAAAAGTCTAAGTTCGTGC
* ** * * * * *
2924084 CTCAAATGAGACAAACTTGGATTCTAGTGTTAATCTTCAATCATTTTGTGATTAAGCA-TGGAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * **
2924148 -TCGTT--TCTTATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGGAAATCGCTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * *
2924210 CCTATTTTGCTTTAAATTAAAGTTCATCCCTAGAACAAGACAAGCATCGATTCTCGTGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * *
2924275 CCACTCTTTTTAAGATTAGGAACCAAGAACACATTCCCTTCATTAGGATACCTGACATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* ** * * * * * * *
2924340 TCGGTG-CTATAATAAAGGTTTTTCTTTCGACTGTTTTTGATAGAATCAATGTTTGTTAATTAAA
261 TTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * **
2924404 TAAGACAAACATGAATAGTCATACTAATCCCCATTATTTTCAAGG-TTAGGCTCCATAGGCATAG
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC-AGGATTAGGCACCATAAACATAG
* * * * *
2924468 TCTTCACATAAGGATATACGATATATTGACGCTTTAGTTTCGTAAGAAAGGCTTTCTTTCCCCTA
389 TCTTCTCATAAGGATACACG--ATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCCCA
*
2924533 ATTTTTGAAAAGTCTATGTTCGTGC
451 ATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2924558 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * *
2924623 CACATTCCCCTCATTGGGATAAAGGATATTAATGATTTCCTCTAGCATGGAAATCGTTTCTTTGA
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * * * ***
2924688 CTTATTTTGCTTAAAATTATAGTTCATCCCTAGGAAAAGACAAGCATCGATTGTTGTGGTGGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* *
2924753 CCACTCTTTTCATA-ATTAGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACATTGATGC
196 CCACTCTTTTCA-AGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * * *
2924817 TTTGGTGCCGCAATAAAGGCTTTTCTTTCAACCGTTTTTGATATAATTAAAGTTTATCTCTCAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * * * *
2924882 TAAGACAAACATGAACAGTTATATTAATCCCCATTCTTTAT-AGGATTCGGCACCAAAAACACAG
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTT-TCAGGATTAGGCACCATAAACATAG
* * * * **
2924946 TCTTCTCATAAGG-TACATGATAATGACACTTTGGTTTCACAAGAAAGGCTTTCTTGCTACCAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAAT
* * * *
2925010 TTTTGAAAAGTGTAAGCTCATGA
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * *
2925033 CTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCTTTCATTTTGTGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * ** * *
2925098 CACATTCTCCGCATTAGGATAAAGGATATTGATGATTTTCTCTAGTGTGGAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * *
2925163 GCTATTTTGCTTAAAATTAAAGTTCA-CCTCTGGAAAACGATAAGCATCGATTCTCGTGACAGTC
131 CCTATTTTCCTTAAAATCAAAGTTCATCC-CTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2925227 TCCACTCTTTACAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACTTGGCATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
** ** * *
2925292 TTTGGTG-CTGTGATAAAAGCTTTTCTTTCCACTATTTTTGATAGAATAAAAGTTTGCCACTTAA
260 TTTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * * *
2925356 ATAAGACAAACATGAATAGTCATGCTAATCCCCATTATTTTCAGGATTCGGCACCATAAGCAAAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
** * * * * * *
2925421 TCTTCTCATAAGGATGTATGATATTGATGC-TTCGATTCACAAGAAAGGCTTTCTTTCCCCTAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCCCAAT
* *
2925485 TTCTGAAAAGTCTAAGTTCGAGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * * * * * *
2925508 TTTAAATTAGACGAAGATGGATTCTAATAATAATCTTCATTCATTTCGTGATTAGGCATTTTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2925573 CACATTCCCCTCATTAGGATAAATAATATTGATGATTTTCTCGAGCTTGGAAATCATTTATTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2925638 CCTATTTTCCTTAAAATCAAAGTTCATCACTTGAAAAAAACAAGCATTGATTCTTGTGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * *
2925703 CCAC-CATTTTCAAGATTTGGAACCAA-AGACACATTCCCTTCCTTAGGATACATGACATTCATG
196 CCACTC-TTTTCAAGATTGGGAACCAAGA-ACACATTCCCTTCATTAGGATACATGACATTGATG
* ** * * ** *
2925766 TTTTGACGTCACAAAAAAAGCTTTTCTTTCCACTTTTTTTGATAGAATCAAAGTTTGACACTTAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* ** * *
2925831 ATAAGACAAACATGGATAGTTGTACTAAT-CCCATTCTTTTAAGGATTAGGCACCGTAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * *
2925895 TTTTCTCATAAGGATATACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT-TGTCCCCCCAA
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCT-T-CCCCCAA
* *
2925959 TTTTTG-AAAGTCTAAGTGCATGC
452 TTTTTGAAAAGTCTAAGTTCGTGC
** * *
2925982 CTCAAATGAGACAAACATGGATTCTAGTAACAATCTTCATTTATTTCGTGATTAGGCACTGCAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2926047 CACATTCCCCTCATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGGAAATCGTTCCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2926112 CCTATTTTGCTT-AAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGAGAGTCC
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * * * ** ** *
2926176 CCACTATTTTCAAGATTGGGAACTAGGAATACTTTCCCTTCCCTAAAATACATGATATTGATGCT
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * *
2926241 TTGGTGTCGTAATAAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAATTTTTCACTTAAAT
261 TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
* * * *
2926306 AAGACAAACATGAAT-GTTCCTAGTAATCCCTATTCTTTTCAGGATTAGGCACCATAAACATTGT
326 AAGACAAACATGAATAG-TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * *
2926370 CTTCAT-ATAAGGATACACAATATTGATGCTTTAGTATCGCAAGAAAGGCTTTCTTCCCCCTAAT
390 CTTC-TCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AAT
*
2926434 TTTTGAAAAGTCTAAGTTCGAGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * *
2926457 CTCAAATAAGAGAAACATGGATTCTAGTAATGATCTTCATTCATTTCTTGATGAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * **
2926522 CACAATCCCATCATTAGGATAAATGATATTGACAATTTTCTCTAGCATGAAAATCTTTT-TTT--
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * **
2926584 CCTATTTTCCTTAAAAT-AATAGTTCATCCCCTAAAAAAGACTAG-AGTCGATTCTTGTGACAAA
131 CCTATTTTCCTTAAAATCAA-AGTTCATCCCTTGAAAAAGACAAGCA-TCGATTCTCGTGACAGT
* * * * * *
2926647 CTCTACACTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCATTAGGACACACGGCATTGATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * ** * *
2926712 CTTTGGTGTCGTAGTAAAGGCTTTT-TTTTAACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
** * *
2926776 ATAAGACAAATGTTAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * *
2926841 TCTTTTCATAAGGATACACGATACTGACGCTTTGATTTCGCAAGAAAGGCTGTCTACCCCTCAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCC-CAAT
*
2926906 TTTTGAAAAGTCTAAGTTCCTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
** ** * * * * * **
2926929 GGCAAATGAGATGAGCATTGATTCTAGTAATGTTCTTCATTCATTTCGT-AGTTAGACTCCATAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGA-TTAGGCACTGTAA
* * * *
2926993 ACACATTCCTCTCATCAGGATAAATAATATTGACGATTTTCTCTAG--TGTAGAAATCTTTTCTT
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATG-A-AAATCTTTTCTT
* * * * * *
2927056 CGCCCTATTTTTCTTAAAATCAAAGTTCATCCATCGAAAAAGATAAGCATCGATTCTCCTGACAG
128 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAG
* * * * *
2927121 TCTCCACTATTTTCAAGATTGAGAATCATGAACACATTCCCTTCGTTAGGATACATGACATTGAT
193 TCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * ** * * **
2927186 GCTTTCGTGTCGCAATAAAAGCTTTTCTTCCCATTGTTTCT-AGCAGAATCAAAGTTTGGAACTT
258 GCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGA-TAGAATCAAAGTTTGTCACTT
* * *
2927250 AAATAAG----ACATGAATAGTCATACTAATCCCTATTATTTTTAGGATTAGGCACCATAAACAT
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * *
2927311 AGTCTTCTCATAATGG-TACATGATATTGACGCTTTGGTTTCGCAAGAAATGTTTTCTTCACCCC
387 AGTCTTCTCATAA-GGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCC
* *
2927375 AATTTTTGAAAAATCTAAGTTCCTGC
450 AATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2927401 ATCAAATGAGACGAACATGGATTCTAGTAATGTTCTTCATTCATTTCGTGATTAGGCACTGTAAG
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * *
2927466 CACATTCCCTTCGTTAGGATAAATGATATTGACGATTTTCTCTAGCATGAAAATCTTTTCTTCT-
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTT-TG
* * * * * * *
2927530 CTCAATTTTCCTTAAAATCAAAGTTCATCCCCTGAATAAGATAAGAATTGATTCTCGTGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * *
2927595 CCCACTCTTTTCAAGATTGGGAACCAAGAACAAATTCCCTTGATTAGGATGCATGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * ** * *
2927660 TTTGGTGTTGCAATAAAGGCTTTTCTTTCGACCCTTTTTGATA-AGGCAAAGTTTGTCTCTCAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * * * * ** *
2927724 TAAGACAAACATTAGTAGTAAGACTAAGCCACATTCTTTTCAAAATTAGGCACCATAAACATTGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* *
2927789 CTTCTCATAAGGATACACGATATTGACGTTTTGGTTTCGCAACAAAGGCTTTCTTCTCCCCAATT
390 CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCCAATT
* *
2927854 TTTGAAAAGTCTAAGTTCCTGG
454 TTTGAAAAGTCTAAGTTCGTGC
* * * * *
2927876 CTCAAATAATACGAACATGGATTCTAGTAATGTTCTTCATTCATTTCGTGATTCGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2927941 CACATTCCCCTAATTAAGG-TAAATAATATTGATGATTTTCTCTAGCATGGAAATCTTTTTTTTG
66 CACATTCCCCTCATT-AGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * *
2928005 CCCTATTTTCCTTGAAATGAAAGTTCAT-CCTTGGAAAAAGATAAGCATCGATTCTCGTGACAAT
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTT-GAAAAAGACAAGCATCGATTCTCGTGACAGT
* * * * *
2928069 CTCCATTCTTTTCAAGATTGGGAATCAAGAACACATTCCCTTCATTAGGATACTTGGCATTGACG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * *
2928134 CCTTCGTGTGGCAGA-AAAGGCTTTTCTTTCAACCGTTTTTGATAAAATCAAAGTTTGTC-TTTC
259 CTTTGGTGTCGCA-ATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTT-
* * * *
2928197 AAATAAGACAAACGTTAATAGTCATACTAACCCCCAATCTTTTCAGGATTAGGCACCATAAACAT
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
*
2928262 AGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTA
387 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-A
* *
2928327 ATTTTTGAAAAGTCTAAGTTCCTAC
451 ATTTTTGAAAAGTCTAAGTTCGTGC
** * * **
2928352 CTCAAATGAGATGAACATTGATTCTAGTAATGTTCTTTTTTCATTTCGTGATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * **
2928417 CACATTCCCCTCATCAAGG-TAAATAATATTGATGATTTTCTGTAGTGTGAAAATCTTTTCTTTG
66 CACATTCCCCTCAT-TAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * * * *
2928481 TCTTATTTTTCATAAAATCAAAGTTCATCCATTGAAAAAGATAAGCATCGATTCTCGTGACAATC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * * * * * *
2928546 TCTATTCTTTCCAAGAGTGGGAACCACGAACACATTCCCTTTAGTAGGATGCATGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
** * * *
2928611 TTTGGTGTCGCAATAAAAGCTTTTC-TTCCTATTGTTTCT-AGTAAAATCAAAGTTTGGCACTTA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCC-ACCGTTTTTGA-TAGAATCAAAGTTTGTCACTTA
* * * *
2928674 TATAAGACAAACATGAATAGTCATACTAAT-TCC---C-TTTC-GG--TAAG-ATCATAAA-AT-
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * *** **** * * *** **
2928728 G-CTACCCGA-AA--ATATAC-AT-TTGAAAATTAT-G-CAAACAA-AAGGGATTAGAGTCAACC
388 GTCTTCTC-ATAAGGATACACGATATTGACGCTT-TGGTTTCGCAAGAAAGGCTT-TCTTCCCCC
** *** *
2928784 AAAATTT--ATTTTCTAAGTT-TTG-
450 AATTTTTGAAAAGTCTAAGTTCGTGC
* * * *** * * * ** * **
2928806 -TTATATCA-A-AAAGGGGGAGAT-TA-TTAGGATCTTGGTTTCGATATAACAAAAGATTGAATG
1 CTCAAATGAGACAAACATGGA-TTCTAGTAATGATCTT-CATTC-AT-T-TC--GTGATT--A-G
** * * **** ** * * * *
2928866 AAACTGAAAATTA-ATTTGAAAATACCAAAAATGTGTTTTATTCAATTAAGTACTTTATAAATTT
56 GCACTGTAAA-CACA-TT-CCCCT--C-ATTA-G-G----A-T-AAATGA-TA-TTGAT-GATTT
* * * * * **
2928930 TGTGCTAAAAGATTTTTAACTCATTAAATGTTTTCTAGATAAG-TATAAATGTTTTCAAGGCTTA
104 TCT-CT---AG------CA-TGA--AAATCTTTTCT---T-TGCCCT--A--TTTTC----CTTA
* ** ** ** * * * * ** * *
2928994 AAATGAGTGTTTTTCGAGTT-AAAATATATCAAAGTATCGATACATAG-GTATTTGTATCGA-TA
144 AAATCAAAGTTCATC-CCTTGAAAA-AGA-C-AAGCATCGATTC-TCGTG-A-CAGTCTCCACT-
* ** * ** ** * ** * * * *
2929056 C-ATT-AAGGTTGACTTAGGCTACAAAGGTCA-AAACCC-TGAAAAGTAT-CGATATACCTTCA-
201 CTTTTCAA----GA-TT-GGGAACCAAGAACACATTCCCTTCATTAGGATAC-AT-GACATTGAT
** * * * ** * * * * * * *
2929115 --AAT-GTATCG--AT-ACAGATTGCACAGTATCGATACATTGTATCGATACATGACCAAATGTA
258 GCTTTGGTGTCGCAATAAAAGCTT-TTC--TTTCCA-CCGTT-T-TTGATAGA--ATCAAA-GT-
* * * * * * * *
2929174 TCGAT-ACTTGTAAAGAATGTATCGATACAGGTCATTGGCAGTAGCTTGGCAATAGCCACCCTTA
313 TTG-TCAC-T-TAAATAA-G-A-C-AAACATG-AATAGTCA-TA-C-T---AAT--CC-CCATT-
* * * * * * * *
2929238 ACTATTTATATCGA-TA--CA-CA-CAAGAT-GT-ATCGAT-ACAATG-TA-TCGATACATTG--
360 -CT-TTT-CA-GGATTAGGCACCATAAACATAGTCTTC--TCATAAGGATACACGAT--ATTGAC
** * * * *** * * * * **
2929291 GC-TT-GTAACAGCTAGTAACGGCTATATTTTCAAATGC-ATGTATCGATACA-TTTACA-TGGG
417 GCTTTGGTTTC-GCAAG-AAAGGCT-T-TCTTC--CCCCAAT-TTTTGA-AAAGTCTA-AGTTCG
2929351 ATTGC
473 --TGC
* * * * * ** ** * * ** * * **
2929356 ATTAAAATAAGCTCCAACAAGTCAATAATGGCTACA-AACTCCACCAATCAATCTCCAACGAATA
1 -CTCAAATGAG-ACAAAC-A-TGGATTCTAG-TA-ATGA-T-CTTCATTC-AT-TTC-GTG-AT-
* * * **** * ** * * * * **** *
2929420 TATCAGCATAGATGGCTATAA-ATAAGAGCTTCCAGCAGCA-AAA-CACA---AGGAAAAAC-CA
53 TA--GGC--A-CT-G-TA-AACACATTCCCCT-CATTAGGATAAATGATATTGATGATTTTCTCT
* ** ** ** ** ** *
2929478 AGCAAGAAACATC-TAGCAAT--CAAAGTTTT-C--AAAGATCAAAGAGTTTCAT-ATTTTCAAG
109 AGCATGAAA-ATCTTTTCTTTGCCCTA-TTTTCCTTAAA-ATC-AA-AG-TTCATCCCTTGAAAA
** ** ** * * * * * * * *
2929536 AG-CTTTTGTTTTTATTGTCAT--TATTTTCAAAGCTCTTTTGTATATGATTTTGAGCTTACATT
168 AGAC--AAGCATCGATTCTCGTGACAGTCTC-CA-CTCTTTT-CA-A-GA--TTG-G--GA-A--
* * * * ** * * *** *
2929598 CCCACA-AACACCA--GCC-TAATTAGAGGTA-ATTGTCATTTGTAAACTTT-CT-TTGTTTTGT
218 -CCA-AGAACA-CATTCCCTTCATTAG-GATACA-TGACA-TTG-ATGCTTTGGTGTCGCAAT-A
** * * * * ** **** * * * *
2929656 TGAGGTTGT-GTTCAACCGAAAAGTGTTAATCTCTTAGGAACTTGGGGTATAGT-TCTTGAA-GA
275 AAAGCTTTTCTTTCCACC-----GT-TT--T-TGATA-GAA-TCAAAGT-TTGTCACTTAAATAA
* ** * * **** ** * * ** * *
2929718 GATTAAGAGGTTG-TTA-TCTTAGCCTTAA-AAAGATAAGGATTGTAAGG-TTATACCTTTGCCT
328 GA-CAA-A-CATGAATAGTCATA--C-TAATCCCCAT---TCTTTTCAGGATTA-GGC---ACCA
** * * * *** * * * *** * *
2929779 TAAAGGTAATCAATTCT-TTTAGTGA-ATTGGGTAATCACTCGACAAGGAAGTGTCG-AGGAGAG
380 TAAACATAGTC--TTCTCATAAG-GATACACGATATTGA--CG-CTTTG--GTTTCGCA--AGAA
* *** * * * ** **
2929841 AGGACGTAGGT--GCCGA-TTTGGACCGAACCTCTATAAATC-T--
435 AGG-CTTTCTTCCCCCAATTTTTGA---AAAGTCTA-AGTTCGTGC
* * ** * * *** ** * * *** *
2929881 -T---TTGTGTTAAGCTTTTCTTCCT--TAATCCTCTTTA-TC-TTTCG-AATT--GTTTTGT-T
1 CTCAAATGAGACAAACATGGATT-CTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAA
* * * * ** **** * ** * ** ** *** *
2929934 CCAAAAT-CCTTCAAAACCCGAAA--AT-TCGA--A--AACAACTA--AT-TCACCCCCCTCTTG
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTC-TCTAGCATGAAAATCTTTTCTTT
** * *** * * *
2929988 GTTC-ATCATTCCTTGAGCTTTCAAAAGTTCATCCCTTGAAAAAGATAAGCATTGATTCTCATGA
129 GCCCTAT-TTTCCTT-A-AAATC-AAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGA
* *
2930052 CAGTCTCCACTCTTTTCAAGATTGGGAACCAAGATCACATTCCCTTCATTAGGATACAAGACATT
190 CAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATT
* * * * * * * *
2930117 GATGCTTTGGTGTTGCAAGAAAAGTTTTTCTTTTCACCATTTTTGATAAAATTAAAGTTTGACAC
255 GATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCAC
* * * ***
2930182 TTATATAAGACAAACATGAATAGTCATACTAATTCCCTTTCCCCTCAGGATTAGGCACCATAAAC
320 TTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAAC
* * * * * * *
2930247 ATGGTTTTCTTATAAGGAT--AC-------A-GCTTTTGTTTCCCAAGAACGGCTTTGTTCCCAC
385 ATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-C
* *
2930302 CAATTTTTGGAAAGTCTAAGTTCTTGC
449 CAATTTTTGAAAAGTCTAAGTTCGTGC
* * * *
2930329 CTCAAATGAGACGAATATGGATTCTAGTAATGTTTTTCATTC-TATTCGTGATTAGGC-CT-TAC
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT-TTCGTGATTAGGCACTGT--
* * * * * * *
2930391 AAACACATTCCCCTCATTAGGAT-AAGGAATATTGATGATTTTCACTACCGTGGAAATCGTTCCT
63 AAACACATTCCCCTCATTAGGATAAATG-ATATTGATGATTTTCTCTAGCATGAAAATCTTTTCT
* * * *
2930455 TTGCCCTATTTTCCTAAAAATCAAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTCATGATA
127 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACA
* * *
2930520 GTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCAATAAGATACAGGACATTGA
192 GTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGA
* * * * * * * **
2930585 TGCTTTGGGGTTGCAATAAAGGCTTTTCTTTCAACCATTTTCGATAGAATGAAAGTTTACCACTT
257 TGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTT
* * * * * *
2930650 AAATAAGACAAACAAGAAAAGTCATACTAATCCCCATTCTTTTCAAGATTAGACACAATAAATAT
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
** * * * * * * * * *
2930715 AGTCTTCTCATAAGGGCACATGATATTGAC-ATTATCGTTTCCCATGAAAGACTTTTTTCCTACT
387 AGTCTTCTCATAAGGATACACGATATTGACGCTT-TGGTTTCGCAAGAAAGGCTTTCTTCC-CCC
* * *
2930779 AATTTTTGCAAAGTCTATGTTCGTAC
450 AATTTTTGAAAAGTCTAAGTTCGTGC
* * * ** * * * ** * *
2930805 CTCATATCAGACAAGA-ATTGATTCTAGTAAAAATCATCCTTCATTTCGTAATTAGATACTATGA
1 CTCAAATGAGACAA-ACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAA
** * * * * * *
2930869 ACACATTCTTCTGATTAGGATAAATGATATTGCTGATTCTCTCTGGCATGGAAAT-TTTTTTTTG
65 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * * * * *
2930933 -CGTATTTTCCTTATAATCAAAGTTTAGCCCTT-AGAAAAGACCAGCATCCACTCTCGTGACAAT
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGA-AAAAGACAAGCATCGATTCTCGTGACAGT
* * * *
2930996 CACCACTCTTTTCAAGATTGGGAACCACGAACACATTCCCATCATTAGGATACATGACATTGATT
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * * * * *
2931061 CTTTGGTGCCGCAATAAAGGCTTTTCTTTCAAACATTTTTGCTAGAATCAAAGATTATCTCTCAA
259 CTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * * * * *
2931126 ATAAGATAAACATGAATAGTTATATTAATCTCTATTTTTTTCAGGATTAGGCACCA-AAAGCACA
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA-CATA
* * * ** * *
2931190 GTGTTCCCAAAAGG-TACATAATATTGACACTTTGGTTTCGTAAGAAAGGCTTTCTTCCCCCCAA
388 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTT-CCCCCAA
*
2931254 TTTTTGAAAAGTCTGAA-TTCGTGA
452 TTTTTGAAAAGTCT-AAGTTCGTGC
* * * ** * *
2931278 CTCAAATAAGACAAACTTGGATTTTAGTGTTGATCTTCATTCATTTTGTGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * *
2931343 CACATTCTCCTTATTAGGATAAAGGATATTGACGATTTTCTCTAGCACGGAAAT-TGTTTTTTTG
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCT-TTTCTTTG
* * * * * * * *
2931407 CCCTATTTTGCTTTAAATTAGAGTTTATCTCTAGAAAAAGACAAGCATCGATTCTCGTGACAATC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * * * * * *
2931472 TCCACGCTTTCCAAGATTGGGAACCAAGAACATATTCCTTTCATTAGGATGCTTAACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* ** * * *
2931537 TTTGGTG-CTG-AATAAAGGCTTTTCTTTCCATTGTTTTTGATAAAATCAAAGTTTGTTAATTAA
260 TTTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * *
2931600 ATAAGACAAACATGAATAGTCATACTAATCCTCATTATTTTCAGGATTAGGCTCCATAAGCATAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * *
2931665 TCTTCTCACAAGGATACACAATATTTATGCTTTGGTTTCGCAAAAAAGGCTTTCTTTCCCCTAAT
389 TCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCCCAAT
*
2931730 TTTGGAAAAGTCTAAGTTCGTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * ** *
2931753 CTCAAATGAGAGAAACATAGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGTGCTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * *
2931818 CACATTCCCCTTATTAGGATAAAGGATATTGATGATTTTCTCTAGCAT-AGAAATCATTTCTTTG
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGA-AAATCTTTTCTTTG
* * * * * * * * **
2931882 CCTTATTTTGCTTAAAATTATAGTTCATCCCTAGAAAAAAACAAACATC-AGTTGTCGTGGTAGT
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGA-TTCTCGTGACAGT
* * * * * *
2931946 CTCCACTCTTTCCAAGATTAGGAGCTAAGAACACATTCCCTTCATTAGGATATAAGACATTGATG
194 CTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * * * * *
2932011 CTTTGGTG-CTACAATAAAGGCTTTTCTTT-CACCCTTTTTTGATATAATCAAACTTTATCTCTC
259 CTTTGGTGTC-GCAATAAAAGCTTTTCTTTCCA-CCGTTTTTGATAGAATCAAAGTTTGTCACTT
* * * * *
2932074 AAATAAGACAAACATGAATAGTTATATTAAT-CCCATTCTTTTCAGGATTCGGCACCAAAAACAC
322 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * *
2932138 AATCTTCTCATAAGG-TACAGGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTCCTTCCCACCA
387 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCA
* *
2932202 ATTTTTAAAAAGTCTAAGTTCGTGA
451 ATTTTTGAAAAGTCTAAGTTCGTGC
* * * * * * *
2932227 CTTAAATGAGATAAACTTGGATTCTAGTATTGATGTTCATTCATTTTGTGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * *
2932292 CACATTCTCCAT-ATTACGATAAAGGATATTGATGATTTTCTCTAGCATGAAAATCGTTTCTTTG
66 CACATTC-CCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTG
* * * * * ** *
2932356 CCCTATTTTGCTTAAAATTAATGTTCATCTCTAGAAAAAGACAAGCATCGATTCTTATGATAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2932421 TCCACTCTTTTCAAGATTGGGAGCCAAGAACATATTCCCTTCATTAGGATACTTGACATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * *
2932486 TTTGGTGCCGCAATAAAAGCTTTTCTTTTCACTGTTTTTTATAGAATCAAAGTTTGTCACTTAAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAA
* * * * * *
2932551 TAAGACAAACATGACTAGTCATACTAATCCCCATTATTTTTAGGATTATGCATCATAAGCATAGT
325 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGT
* * * ** *
2932616 CTTCTCATAAGGATATACGATATTGACGCTTTGATTTTC-CAAGAAACGCTTTCTTCGCCTTAAA
390 CTTCTCATAAGGATACACGATATTGACGCTTTG-GTTTCGCAAGAAAGGCTTTCTTC-CCCCAAT
2932680 TTTTGAAAAGTCTAAGTTCGTGC
453 TTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2932703 ATCAAATGAAACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTTATTAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * *
2932768 CACATTCCCCTCATTAGGATAAAGGTTATTGATTATTTTCTCTAGCGTGGAAAT-GTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * * * * *
2932832 CTTATTTTGCTTAAAATTAAAGTTCATTCCTAGAAAAAGACAATCATCGAGTCTCGTGGA-AGTC
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGT-GACAGTC
* * * *
2932896 TCCACTCTTTTCAAGATTGGGAACCACGAATACATTCCCTTCATTAGGATACAAGAAATTGATGC
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * * * * * * *
2932961 TTTGGTGCCGCAATAAAGGATTTTCTTTCAATCATTTTTGATAGAATCAAAGTTTAT-ATCTCAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCA-CTTAA
* * * * * *
2933025 ATAAGACAAACATGAATAGTTAT-CTTTATCCCCACTCTTTTCAGGATTAGGCACAAAAAACACA
324 ATAAGACAAACATGAATAGTCATAC-TAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * * * *
2933089 GTGTTCTCATAAGG-TACACGATATTGATGCTTTGGTTTCGCAAAAAAGGCTTTCTTCACACTAA
388 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCCAA
* *
2933153 TTTTTGAAAAGTCTAAGTTTGTGA
452 TTTTTGAAAAGTCTAAGTTCGTGC
* * ** * * *
2933177 CTCAAACGAGACAAACTTGGATTCTAGTGTTGATCCTCATTTATTTCGTGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * *
2933242 CACACTCTCCTCATTAGGATAAAGGATATTGATGATTTT-TCTTAGCATGGAAATCATTTCTTTG
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTC-TAGCATGAAAATCTTTTCTTTG
* * * * * * *
2933306 CCCTATTTTGCTTAAAATTAAAGTTCATCTCTGGAAAATGATAAGCATAGATTCTCGTGACAGTC
130 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2933371 TCCACTCTTTTCAAGGTTGGGAACCACGAACACACATTCCCTT-AGTTAGGATACAAGACATTGA
195 TCCACTCTTTTCAAGATTGGGAACCAAG-A-ACACATTCCCTTCA-TTAGGATACATGACATTGA
* * * * * * * * * * *
2933435 TGCTTTGATGTTGCAATAAAGGCATTTCTTTCAACCATTTCCTAATATAATCAAAGATATTATCT
257 TGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTT-TTGATAGAATCAAAG-T-TTGTCA
* * * * * * *
2933500 CTCAAATAAGACAAAAATGAATAGTTATATTAATCCCCATTCCTTTCAAGATTAGGCACCAAAAA
319 CTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAA
* * * *
2933565 CACAGTCTTCTAATAAGG-TACACGATATTGACACTTTGGTTTCGCAAGAAAAGCTTTCTTCCCA
384 CATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-
*
2933629 CCAATTTTTGAAAAGTCTAAGTTCGTGA
448 CCAATTTTTGAAAAGTCTAAGTTCGTGC
* * * * * * *
2933657 CTAAAATGAGACAAACTTGGATTCAAGTATTGATCTTCATTTATTTTGTGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * * * *
2933722 CACTTTCTCCTCATTAGGATAAAGGATATTGATCATTTTCTCTAGCATGGAAATCATTTCTTTGT
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * *
2933787 CCTATTTTGCTTAAAATTAAAGTTCATCCCTGGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
* * * *
2933852 CCACTTTTTTCAAGATTGGGAACCAAGAACTCATTCCCTTCATTAGGATACAAT-ACAGTGATGG
196 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATAC-ATGACATTGATGC
* * * * * * * *
2933916 TTTGGTGACTCAATAAAGGCTTTTCTTT-CATCCATTTTTGATAAAATCAAAGTTTATCTCTCAA
260 TTTGGTGTCGCAATAAAAGCTTTTCTTTCCA-CCGTTTTTGATAGAATCAAAGTTTGTCACTTAA
* * * * * * *
2933980 ATAAGGCAAACATGAATAGTTATATTAATCCTCATTCTTTTCAGGATTAGGCACTAAAAACACAG
324 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAG
* * * * * *
2934045 TGTTCTCAT--GCAGTACACGATATTAACGCTTTGGTTTCGCAAGAAAGACTTTTTTCCCACTAA
389 TCTTCTCATAAGGA-TACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAA
* * *
2934108 TTTTTG-AAAGTCTAAATTCATGA
452 TTTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2934131 CTCAAATGAGACAAACTTGGATTCTAGTATTGATGTTCATTCATTTTGTGATTAGGCACTATAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * *
2934196 CACATTCTCCTTATTAGGATAAAGGATATTGATGATTTTCTCTAGTATGAAAATCGTTTCTTTGC
66 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
* * * *
2934261 CCTATTTTGCTTAAAATTAATGTTCAT-CCTTGGAAAAAGTCAAGCATCGATTCTCGTGACAGTC
131 CCTATTTTCCTTAAAATCAAAGTTCATCCCTT-GAAAAAGACAAGCATCGATTCTCGTGACAGTC
* * *
2934325 TCCACTCTTTTCAAGATTGGGAACCAAGAACGCATTCCCTTTTATTAGGATACTTGACATTGATG
195 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCC-TTCATTAGGATACATGACATTGATG
* * * ** *
2934390 CTTTGGT-ACTACAATAAAGGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGTCAATTA
259 CTTTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTA
* * * * * * *
2934454 AATAAGACAAACATTAATAGTCATACTAATCCCTATTATTTTTAGGATTAGGCTCCATTAGCATA
323 AATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * ** * *
2934519 GTCTTCTCATAAGGATATATGATATTGACGCTTTGGTTTCATAGGAAAGGCTTTCTGTCCCCTAA
388 GTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCT-TCCCCCAA
* * *
2934584 TTTTTGAATAGTCTAAGTCCATGC
452 TTTTTGAAAAGTCTAAGTTCGTGC
* * * * *
2934608 CTCAAATGAGACAAACATAGATTCTAGTAATGATCTTTATTCTTTTTGTGAATAGGCACTGTAAA
1 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
* * * * *
2934673 TACATTCCCCTCATTAGGGTAAAAGGTTATTGACGATTTTC
66 CACATTCCCCTCATTAGGAT-AAATGATATTGATGATTTTC
2934714 CACAGTCTTC
Statistics
Matches: 52008, Mismatches: 10113, Indels: 5011
0.77 0.15 0.07
Matches are distributed among these distances:
439 5 0.00
440 152 0.00
441 86 0.00
442 13 0.00
443 13 0.00
444 23 0.00
445 17 0.00
446 15 0.00
447 6 0.00
448 4 0.00
449 11 0.00
450 16 0.00
451 18 0.00
452 12 0.00
453 15 0.00
454 4 0.00
455 7 0.00
456 20 0.00
457 7 0.00
458 15 0.00
459 23 0.00
460 17 0.00
461 11 0.00
462 16 0.00
463 18 0.00
464 29 0.00
465 681 0.01
466 268 0.01
467 196 0.00
468 274 0.01
469 524 0.01
470 534 0.01
471 621 0.01
472 3395 0.07
473 3512 0.07
474 6986 0.13
475 15262 0.29
476 11520 0.22
477 1827 0.04
478 771 0.01
479 1351 0.03
480 405 0.01
481 88 0.00
482 89 0.00
483 68 0.00
484 51 0.00
485 45 0.00
486 21 0.00
487 29 0.00
488 53 0.00
489 28 0.00
490 205 0.00
491 25 0.00
492 14 0.00
493 38 0.00
494 22 0.00
495 20 0.00
496 30 0.00
497 222 0.00
498 36 0.00
499 52 0.00
500 27 0.00
501 27 0.00
502 43 0.00
503 45 0.00
504 36 0.00
505 38 0.00
506 41 0.00
507 46 0.00
508 45 0.00
509 37 0.00
510 26 0.00
511 41 0.00
512 22 0.00
513 24 0.00
514 41 0.00
515 52 0.00
516 51 0.00
517 44 0.00
518 41 0.00
519 57 0.00
520 59 0.00
521 60 0.00
522 68 0.00
523 56 0.00
524 48 0.00
525 43 0.00
526 47 0.00
527 40 0.00
528 60 0.00
529 48 0.00
530 34 0.00
531 30 0.00
532 62 0.00
533 56 0.00
534 28 0.00
535 60 0.00
536 52 0.00
537 47 0.00
538 69 0.00
539 44 0.00
540 34 0.00
541 35 0.00
542 38 0.00
543 10 0.00
544 20 0.00
545 22 0.00
546 7 0.00
547 6 0.00
548 7 0.00
549 22 0.00
550 21 0.00
551 12 0.00
552 15 0.00
553 7 0.00
554 9 0.00
555 9 0.00
556 19 0.00
557 15 0.00
558 12 0.00
559 7 0.00
560 11 0.00
561 4 0.00
562 3 0.00
563 5 0.00
564 6 0.00
565 2 0.00
566 2 0.00
567 1 0.00
569 2 0.00
570 11 0.00
571 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.35
Consensus pattern (475 bp):
CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAAA
CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGC
CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCT
CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
TTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTTAAAT
AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTC
TTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAATTTT
TGAAAAGTCTAAGTTCGTGC
Found at i:2875572 original size:22 final size:22
Alignment explanation
Indices: 2875547--2875591 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
2875537 GATATATGGC
*
2875547 ATTAATGCTTTGGGGTCGCAAT
1 ATTAATGCTTGGGGGTCGCAAT
2875569 ATTAATGCTTGGGGGTCGCAAT
1 ATTAATGCTTGGGGGTCGCAAT
2875591 A
1 A
2875592 AAGCTTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.24, C:0.13, G:0.29, T:0.33
Consensus pattern (22 bp):
ATTAATGCTTGGGGGTCGCAAT
Found at i:2888348 original size:159 final size:157
Alignment explanation
Indices: 2887204--2888351 Score: 413
Period size: 159 Copynumber: 7.2 Consensus size: 157
2887194 TAGGCACTGT
* * *
2887204 AAACACATTCCCCTTATTAGGATA-AATAACATTGATTATTTTCTCTAGCATGGAAATCGTTTCT
1 AAACACATT-CCCTTATTAGGATACAA-GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
* * * * *
2887268 TTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTGAAA-AAGATAGGCATCGATTCTCATCAC
64 TTGCCCAATTTTG-TTAAAATCAAAGTTTATCCCTTGAAATAAGATAAGCATCGATTCTCATGAT
* *
2887332 AGTCTCCACTATTTTCAAGATTGGGAACCA
128 AGTCTCCACTCTTTTCAAGATTAGGAACCA
* * * ** * * * * * *
2887362 AGAACACATTCCCTTCATTAGGATACAAGACAATGATGCTTTGGTGTTGCAAGAAAAGCTTTTCT
1 A-AACACATTCCCTT-ATTAGGATACAAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
* ** * * * * * **
2887427 TTTCACCTTTTTTGATAGAATCAAAGTTTGA-CACC-T-AAATAAGACAAACATGGATAGTCAT-
64 TTGC-CCAATTTTGTTAAAATCAAAGTTT-ATC-CCTTGAAATAAGATAAGCATCGATTCTCATG
* * ** * * *
2887488 ACTAATCCCCTTTCCTTTCAGGATTAGGCACCA
126 A-TAGTCTCCACTCTTTTCAAGATTAGGAACCA
* ** * * * ** * * ** *
2887521 TAAACATAGTTTTCTTATAAGGATACACGATATTGACGCCTTTGTTTCCCA-AG-AA-CGGCTTT
1 -AAACACA-TTCCCTTATTAGGATACAAGATATTGATGATTTTCTCTAGCATGGAAATC-G-TTT
** * * * * * * *
2887583 CTTCCCCCTAATTTT-TGTAAAGTCTAAA---T-TCCGACGTCAAATGAGACGAA-TATGGATTC
62 CTTTGCCC-AATTTTGT-TAAAATC-AAAGTTTATCC--CTTGAAATAAGA-TAAGCATCGATTC
* * ** * * * * *
2887642 -CAGTAAT-GTTTTTGAATCGTTTCACGATTAGGCACTGTA
121 TCA-TGATAG-TCTCCACTCTTTTCAAGATTAGGAAC--CA
*
2887681 AAA-ACATTCCCCTTATTAGGATA-AATAATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
1 AAACACATT-CCCTTATTAGGATACAA-GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
2887744 TTGCCCAATTTTGCTTAAAATCAAAGTTTATCCCTTGAAA-AAGATAAGCATCGATTCTCATGAT
64 TTGCCCAATTTTG-TTAAAATCAAAGTTTATCCCTTGAAATAAGATAAGCATCGATTCTCATGAT
*
2887808 AGTCTCCACTCTTTTCAAGATTGGGAACCA
128 AGTCTCCACTCTTTTCAAGATTAGGAACCA
* * * ** * * * * * *
2887838 AGAACACATTCCCTTCATTAGGATACAAGACAATGATGCTTTGGTGTTGCAAGAAAAACTTTTCT
1 A-AACACATTCCCTT-ATTAGGATACAAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
* ** * * * * * * **
2887903 TTTCACCTTTTTTGATAGAATCAAAGTTTGA-CACTT-AAATAAGACAAACATGGATAGTCAT-A
64 TTGC-CCAATTTTGTTAAAATCAAAGTTT-ATCCCTTGAAATAAGATAAGCATCGATTCTCATGA
* * ** * * *
2887965 CTAATCCCCTTTCCTTTCAGGATTAGGCACCA
127 -TAGTCTCCACTCTTTTCAAGATTAGGAACCA
* ** * * * * * ** *
2887997 TAAACATAGTTTTCTTATAAGGATACACGATATTGATGCTTTTGTTTCCCA-AG-AA-CGGCTTT
1 -AAACACA-TTCCCTTATTAGGATACAAGATATTGATGATTTTCTCTAGCATGGAAATC-G-TTT
* * * * * * * * *
2888059 CTTTCCCCCAATTTT-TGTAAAGTCTAAGTTCT-T-GCGTCAAATGAGACGAA-CATGGATTCT-
62 CTTT-GCCCAATTTTGT-TAAAATCAAAGTT-TATCCCTTGAAATAAGA-TAAGCATCGATTCTC
* * * * * * * *
2888119 AGTAAT-GTTTTTCAATCGTTTCATGATTAGGCACTGTA
123 A-TGATAG-TCTCCACTCTTTTCAAGATTAGGAAC--CA
*
2888157 AAA-ACATTCCCCTTATTAGGATA-AATAATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
1 AAACACATT-CCCTTATTAGGATACAA-GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
*
2888220 TTGCCCAATTTTGCTTAAAATCAAAGTTTATCCCTTGAAA-AAGATAAGCGTCGATTCTCATGAT
64 TTGCCCAATTTTG-TTAAAATCAAAGTTTATCCCTTGAAATAAGATAAGCATCGATTCTCATGAT
*
2888284 AGTCTCCACTCTTTTCAAGATTGGGAACCA
128 AGTCTCCACTCTTTTCAAGATTAGGAACCA
* * *
2888314 AGAACACATTCCCTTCAGTAGGATACAGGTTATTGATG
1 A-AACACATTCCCTT-ATTAGGATACAAGATATTGATG
2888352 CTTTGGGGTT
Statistics
Matches: 705, Mismatches: 206, Indels: 157
0.66 0.19 0.15
Matches are distributed among these distances:
154 1 0.00
155 1 0.00
156 4 0.01
157 22 0.03
158 217 0.31
159 393 0.56
160 61 0.09
161 3 0.00
162 3 0.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (157 bp):
AAACACATTCCCTTATTAGGATACAAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTT
GCCCAATTTTGTTAAAATCAAAGTTTATCCCTTGAAATAAGATAAGCATCGATTCTCATGATAGT
CTCCACTCTTTTCAAGATTAGGAACCA
Found at i:2894669 original size:32 final size:32
Alignment explanation
Indices: 2894628--2894689 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
2894618 TTCCTTTTCG
2894628 GTAAGATCATAAAATGCTACCCGAAAATATCA
1 GTAAGATCATAAAATGCTACCCGAAAATATCA
2894660 GTAAGATCATAAAATGCTACCCGAAAATAT
1 GTAAGATCATAAAATGCTACCCGAAAATAT
2894690 ACATTTGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.47, C:0.18, G:0.13, T:0.23
Consensus pattern (32 bp):
GTAAGATCATAAAATGCTACCCGAAAATATCA
Found at i:2895103 original size:13 final size:13
Alignment explanation
Indices: 2895085--2895109 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2895075 AGATTGCATA
2895085 GTATCGATACATT
1 GTATCGATACATT
2895098 GTATCGATACAT
1 GTATCGATACAT
2895110 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2901291 original size:159 final size:157
Alignment explanation
Indices: 2900147--2901294 Score: 413
Period size: 159 Copynumber: 7.2 Consensus size: 157
2900137 TAGGCACTGT
* * *
2900147 AAACACATTCCCCTTATTAGGATA-AATAACATTGATTATTTTCTCTAGCATGGAAATCGTTTCT
1 AAACACATT-CCCTTATTAGGATACAA-GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
* * * * *
2900211 TTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTGAAA-AAGATAGGCATCGATTCTCATCAC
64 TTGCCCAATTTTG-TTAAAATCAAAGTTTATCCCTTGAAATAAGATAAGCATCGATTCTCATGAT
* *
2900275 AGTCTCCACTATTTTCAAGATTGGGAACCA
128 AGTCTCCACTCTTTTCAAGATTAGGAACCA
* * * ** * * * * * *
2900305 AGAACACATTCCCTTCATTAGGATACAAGACAATGATGCTTTGGTGTTGCAAGAAAAGCTTTTCT
1 A-AACACATTCCCTT-ATTAGGATACAAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
* ** * * * * * **
2900370 TTTCACCTTTTTTGATAGAATCAAAGTTTGA-CACC-T-AAATAAGACAAACATGGATAGTCAT-
64 TTGC-CCAATTTTGTTAAAATCAAAGTTT-ATC-CCTTGAAATAAGATAAGCATCGATTCTCATG
* * ** * * *
2900431 ACTAATCCCCTTTCCTTTCAGGATTAGGCACCA
126 A-TAGTCTCCACTCTTTTCAAGATTAGGAACCA
* ** * * * ** * * ** *
2900464 TAAACATAGTTTTCTTATAAGGATACACGATATTGACGCCTTTGTTTCCCA-AG-AA-CGGCTTT
1 -AAACACA-TTCCCTTATTAGGATACAAGATATTGATGATTTTCTCTAGCATGGAAATC-G-TTT
** * * * * * * *
2900526 CTTCCCCCTAATTTT-TGTAAAGTCTAAA---T-TCCGACGTCAAATGAGACGAA-TATGGATTC
62 CTTTGCCC-AATTTTGT-TAAAATC-AAAGTTTATCC--CTTGAAATAAGA-TAAGCATCGATTC
* * ** * * * * *
2900585 -CAGTAAT-GTTTTTGAATCGTTTCACGATTAGGCACTGTA
121 TCA-TGATAG-TCTCCACTCTTTTCAAGATTAGGAAC--CA
*
2900624 AAA-ACATTCCCCTTATTAGGATA-AATAATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
1 AAACACATT-CCCTTATTAGGATACAA-GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
2900687 TTGCCCAATTTTGCTTAAAATCAAAGTTTATCCCTTGAAA-AAGATAAGCATCGATTCTCATGAT
64 TTGCCCAATTTTG-TTAAAATCAAAGTTTATCCCTTGAAATAAGATAAGCATCGATTCTCATGAT
*
2900751 AGTCTCCACTCTTTTCAAGATTGGGAACCA
128 AGTCTCCACTCTTTTCAAGATTAGGAACCA
* * * ** * * * * * *
2900781 AGAACACATTCCCTTCATTAGGATACAAGACAATGATGCTTTGGTGTTGCAAGAAAAACTTTTCT
1 A-AACACATTCCCTT-ATTAGGATACAAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
* ** * * * * * * **
2900846 TTTCACCTTTTTTGATAGAATCAAAGTTTGA-CACTT-AAATAAGACAAACATGGATAGTCAT-A
64 TTGC-CCAATTTTGTTAAAATCAAAGTTT-ATCCCTTGAAATAAGATAAGCATCGATTCTCATGA
* * ** * * *
2900908 CTAATCCCCTTTCCTTTCAGGATTAGGCACCA
127 -TAGTCTCCACTCTTTTCAAGATTAGGAACCA
* ** * * * * * ** *
2900940 TAAACATAGTTTTCTTATAAGGATACACGATATTGATGCTTTTGTTTCCCA-AG-AA-CGGCTTT
1 -AAACACA-TTCCCTTATTAGGATACAAGATATTGATGATTTTCTCTAGCATGGAAATC-G-TTT
* * * * * * * * *
2901002 CTTTCCCCCAATTTT-TGTAAAGTCTAAGTTCT-T-GCGTCAAATGAGACGAA-CATGGATTCT-
62 CTTT-GCCCAATTTTGT-TAAAATCAAAGTT-TATCCCTTGAAATAAGA-TAAGCATCGATTCTC
* * * * * * * *
2901062 AGTAAT-GTTTTTCAATCGTTTCATGATTAGGCACTGTA
123 A-TGATAG-TCTCCACTCTTTTCAAGATTAGGAAC--CA
*
2901100 AAA-ACATTCCCCTTATTAGGATA-AATAATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
1 AAACACATT-CCCTTATTAGGATACAA-GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
*
2901163 TTGCCCAATTTTGCTTAAAATCAAAGTTTATCCCTTGAAA-AAGATAAGCGTCGATTCTCATGAT
64 TTGCCCAATTTTG-TTAAAATCAAAGTTTATCCCTTGAAATAAGATAAGCATCGATTCTCATGAT
*
2901227 AGTCTCCACTCTTTTCAAGATTGGGAACCA
128 AGTCTCCACTCTTTTCAAGATTAGGAACCA
* * *
2901257 AGAACACATTCCCTTCAGTAGGATACAGGTTATTGATG
1 A-AACACATTCCCTT-ATTAGGATACAAGATATTGATG
2901295 CTTTGGGGTT
Statistics
Matches: 705, Mismatches: 206, Indels: 157
0.66 0.19 0.15
Matches are distributed among these distances:
154 1 0.00
155 1 0.00
156 4 0.01
157 22 0.03
158 217 0.31
159 393 0.56
160 61 0.09
161 3 0.00
162 3 0.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (157 bp):
AAACACATTCCCTTATTAGGATACAAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTT
GCCCAATTTTGTTAAAATCAAAGTTTATCCCTTGAAATAAGATAAGCATCGATTCTCATGATAGT
CTCCACTCTTTTCAAGATTAGGAACCA
Found at i:2907613 original size:32 final size:32
Alignment explanation
Indices: 2907572--2907633 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
2907562 TTCCTTTTCG
2907572 GTAAGATCATAAAATGCTACCCGAAAATATCA
1 GTAAGATCATAAAATGCTACCCGAAAATATCA
2907604 GTAAGATCATAAAATGCTACCCGAAAATAT
1 GTAAGATCATAAAATGCTACCCGAAAATAT
2907634 ACATTTGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.47, C:0.18, G:0.13, T:0.23
Consensus pattern (32 bp):
GTAAGATCATAAAATGCTACCCGAAAATATCA
Found at i:2908047 original size:13 final size:13
Alignment explanation
Indices: 2908029--2908053 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2908019 AGATTGCATA
2908029 GTATCGATACATT
1 GTATCGATACATT
2908042 GTATCGATACAT
1 GTATCGATACAT
2908054 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2911229 original size:949 final size:943
Alignment explanation
Indices: 2908912--2911867 Score: 3471
Period size: 949 Copynumber: 3.1 Consensus size: 943
2908902 TGAGCTTTCA
* * * * *
2908912 AAAGTTCATCCTT-GAAAAAGATAAGCAT-TGATTCTCATGACAGTCTCCACTCTTTTCAAGATC
1 AAAGTTCATCCTTAGAAAAAGACAAACATCAG-TTCTCGTGACAGTCTCCACTCTTTTCAAGATT
* * * *
2908975 GGGAACCAAGATCACATTCCCTTCATTAGGATACAAGACATTGATGCTTCGGTGTTGCAAGAAAA
65 GGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTG-TGCAACAAAG
* * * *
2909040 GCTTTTCTTTTCACCATTTTTGATAAAATTAAAGTTTGA-CACTTATATAAGACAAACATGAATA
129 GCTTTTC-TTTCACCATTTTTGATAAAATCAAAGTTT-ATCTCTCAAATAAGACAAACATGAATA
* * * * * * ** * **
2909104 GTCATACTAATTCCCTTTCCTCTCAGGATTAGGCACCATAAACATGGTTTTCTTTTAAGGATACA
192 GTTATA-TAAATCCCATTCTTTTCAGGATTAGGCACCAAAAACACAGTCTTCTCATAAGG-TACA
* * * *
2909169 TGATATTGACGCTTTTGTTTCCCAAGAACGGCTTTCTTCCCACCAATTTTTGGAAAGTCTAAGTT
255 TGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTT
* * * * * * * *
2909234 CCTGCCTCAAATGAGACGAA-TATGGATTCTAGTAATGTTTTTCATTC-TTTTCATGATTTGGC-
320 CGTGACTCAAATGAGACAAACT-TGGATTCTAGTATTGATCTTCATTCATTTT-GTGATTAGGCA
* * * * *
2909296 CTTATAAACACATTC-CCCTCATTAGGAT-AAGGAATATTGATGATTTTCACTACCGTGGAAATC
383 C-TATAAACACATTCTCCAT-ATTAGGATAAAGG-ATATTGATGATTTTCTCTAGCATGAAAATC
* * * * *
2909359 GTTCCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTC
445 GTTTCTTTGCCCTATTTTGCTTAAAAT-TAAGTTCAT-CTTTGAAAAAGACAAGCATCGATTCTC
* * * * **
2909424 ATGATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCAATAAGATACAGGA
508 ATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACATATTCCCTTCATTAGGATACTTGA
* * * ** *
2909489 CATTGATGCTTTGGGGTTGCAATAAAGGCTTTTCTTTCAACCATTTTCGATAGAATCAAAGTTTA
573 CATTGATGCTTTGGTGCTGCAATAAAGGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTA
* * * * * *
2909554 CCACTTAAATAAGACAAACAAGAAAAGTCATACTAATCCCCATTTTTTCAAGATTAAGCACAATA
638 TCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTTTTTCAGGATTAGGCACCATA
* * ** * * * * *
2909619 AATATAGTTTTCTCATAAGGGCACATGATATTGAC-ATTATCGTTTCCCATGAAAGACTTT-TTT
703 AACATAGTCTTCTCATAAGGATACATGATATTGACGCTT-TGGTTTCGCAAGAAAGGCTTTCTTT
* * * * * * **
2909682 CCTACTAATTTTTGCAAAGTCTATGTTCGTACCTCATATCAGACAAGA-ATTGATTCTAGTAAAA
767 CCTACTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAA-ACATGGATTCTAGTAATG
* * * * * * *
2909746 ATCGTCCTTCATTTCGTAATTAGGCACTATGAACACATTCTTCTGATTAGGATAAATGATATTGA
831 ATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGA
* * * *
2909811 TGATTCTCTCTAGCATGGAAT-TTTTTTTTGCCTATTTTCCTTATAATC
896 TGATTTTCTCTAGCATGAAATCTTTCTTTT-CCTATTTTCCTTAAAATC
* * * * * * *
2909859 AAAGTTTAGCCCTTAG-AAAAGATAAGCATCCA-CTCTCGTGACAATCACCACTCTTTTCAAGAT
1 AAAGTTCA-TCCTTAGAAAAAGACAAACAT-CAGTTCTCGTGACAGTCTCCACTCTTTTCAAGAT
* * * * * * *
2909922 TGGGAACCACGAACAGATTCCCATCATTAGGATACATGACTTTGATTCTTTGGTGTCGCAATAAA
64 TGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGT-GCAACAAA
* * *
2909987 GGCTTTTCTTTCAAACATTTTT-ACTAGAATCAAAGATTATCTCTCAAATAAGACAAACATGAAT
128 GGCTTTTCTTTC-ACCATTTTTGA-TAAAATCAAAGTTTATCTCTCAAATAAGACAAACATGAAT
* * * *
2910051 AGTTATTTTAATCCCTATTCTTTTCAGGATTAGGCACCAAAAGCACAGTGTTCTCATAAGGTACA
191 AGTTATATAAATCCC-ATTCTTTTCAGGATTAGGCACCAAAAACACAGTCTTCTCATAAGGTACA
* * * *
2910116 TAATATTGACGCTTTGGTTTCGTAAGAAAGGCTTTCTTCCCCCCAAATTTTGAAAAGTCTGAA-T
255 TGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGAAAAGTCT-AAGT
* * * *
2910180 TCGTGACTCAAATAAGACAAACTTGGATTTTAGTGTTGATCTTCATTCATTTTGTAATTAGGCAC
319 TCGTGACTCAAATGAGACAAACTTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCAC
* * * *
2910245 TATAAACACATTCTCCTTATTAGGATAAAGGATATTGACGATTTTCTCTAGCACGAAAATTGTTT
384 TATAAACACATTCTCCATATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGAAAATCGTTT
* * *
2910310 CTTCGCCCTATTTTGCTTTAAATTAGAGTTCATCTTTGGAAAAAGACAAGCATCGATTCTCGTGA
449 CTTTGCCCTATTTTGCTTAAAATTA-AGTTCATCTTT-GAAAAAGACAAGCATCGATTCTCATGA
* * **
2910375 CAATCTCCA-TGC-TTTCTAAGATTGGGAACCAAGAACATATTCCTTTCATTAGGATGGTTGACA
512 CAGTCTCCACT-CTTTTC-AAGATTGGGAACCAAGAACATATTCCCTTCATTAGGATACTTGACA
* * *
2910438 TTGATGCTTTGGTGCTG-AATAAAGGCTTTTCTTTCCACTGTTTTTGATAAAATCAAAGTTTGTT
575 TTGATGCTTTGGTGCTGCAATAAAGGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTATC
* * *
2910502 AATTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTATTTTCAGGATTAGGCTCCATAA
640 ACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT-TTTTCAGGATTAGGCACCATAA
* * * * *
2910567 GCATAGTCTTCTCACAAGGATACACGATATTGACGCTTTGGTTTCGTAAAAAAGGCTTTCTTTCC
704 ACATAGTCTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTTCC
* * *
2910632 -CCTAATTTTGGAAAAGTCTAAGTTCGTGCCTCAAATGAGAGAAACATGGATTCTAGTAATGATC
769 TACTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * ** * *
2910696 TTCATTCCTTTTGTGATTAGGTGCTATAAACACATTCCCCTTATTAGGATAAAGGATATTGATGA
834 TTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGA
* *
2910761 TTTTCTCTAGCATAGAAATCATTTCTTTTCCTTATTTTGCTTAAAATT
899 TTTTCTCTAGCAT-GAAATC-TTTCTTTTCC-TATTTTCCTTAAAATC
* * * ** * *
2910809 ATAGTTCATCCTTAGAAAAAAACAAACATCAGTTGTCGTGGTAGTCTCCACTCTTTCCAAGATTA
1 AAAGTTCATCCTTAGAAAAAGACAAACATCAGTTCTCGTGACAGTCTCCACTCTTTTCAAGATTG
* * * *
2910874 GGAGCTAAGAACACATTCCCTTCATTAGGATATAAGACATTGATGCTTTGGTGCTACAACAAAGG
66 GGAACCAAGAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTG-TGCAACAAAGG
* *
2910939 CTTTTCTTTCACCCTTTTTTGATATAATCAAAGTTTATCTCTCAAATAAGACAAACATGAATAGT
130 CTTTTCTTTCA-CCATTTTTGATAAAATCAAAGTTTATCTCTCAAATAAGACAAACATGAATAGT
* * *
2911004 TATATAAATCCCATTCTTTTCAGGATTCGGCACCAAAAACACAATCTTCTCATAAGGTACAGGAT
194 TATATAAATCCCATTCTTTTCAGGATTAGGCACCAAAAACACAGTCTTCTCATAAGGTACATGAT
* * * * *
2911069 ATTGATGCTTTGGTTTCGCATGAAAGGCTTCCTTCCCACTAATTTTTAAAAAGTCTAAGTTCGTG
259 ATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTG
*
2911134 ACTCAAATGAGACAAACTTGGATTCTAGTATTGACCTTCATTCATTTTGTGATTAGGCACTATAA
324 ACTCAAATGAGACAAACTTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAA
*
2911199 ACACATTCTCCATATTACGATAAAGGATATTGATGATTTTCTCTAGCATGAAAATCGTTTCTTTG
389 ACACATTCTCCATATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGAAAATCGTTTCTTTG
* * *
2911264 CCCTATTTTGCTTAAAATTAATGTTCATCTCTAGAAAAAGACAAGCATTGATTCTTATGACAGTC
454 CCCTATTTTGCTTAAAATTAA-GTTCATCT-TTGAAAAAGACAAGCATCGATTCTCATGACAGTC
2911329 TCCACTCTTTTCAAGATTGGGAACCAAGAACATATTCCCTTCATTAGGATACTTGACATTGATGC
517 TCCACTCTTTTCAAGATTGGGAACCAAGAACATATTCCCTTCATTAGGATACTTGACATTGATGC
* * * * *
2911394 TTTGGTTCCGCAATAAAAGCTTTTCTTTTCACTGTTTTTTATAGAATCAAAGTTTATCACTTAAA
582 TTTGGTGCTGCAATAAAGGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTATCACTTAAA
* * *
2911459 TAAGACAAACATGACTAGTCATACTAATCCCCATTTTTTTCAGTATTAGGCACCATAAACATTGT
647 TAAGACAAACATGAATAGTCATACTAATCCCCA-TTTTTTCAGGATTAGGCACCATAAACATAGT
* * *
2911524 CTTCTCATAAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAGGCTTTC-TTCCTGC-AAT
711 CTTCTCATAAGGATACATGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTTCCTACTAAT
* ***
2911587 TTTTGAAAAGCCTAAGTTTAAGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
776 TTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * *
2911652 ATTTCATGATAAGGCACTCTAAACACATTCTCCTCATTAGGAT-AAGAGATATTGATGATTTTCT
841 ATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAG-GATATTGATGATTTTCT
*
2911716 CTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
905 CTAGCATG-AAATC-TTTCTTT-TCCTATTTTCCTTAAAATC
* * * *
2911758 AAAGTACATTCTTTGAAAAAGACAAGA-ATC-GATTCTCATGACAGTCTCCACTCTTTTCAAGAT
1 AAAGTTCATCCTTAGAAAAAGACAA-ACATCAG-TTCTCGTGACAGTCTCCACTCTTTTCAAGAT
* *** *
2911821 TTGGAACCAAGAACACATTTTTTTCATTAGGATA-AATGATATTGATG
64 TGGGAACCAAGAACACATTCCCTTCATTAGGATACAA-GACATTGATG
2911868 ATTTTCTCTA
Statistics
Matches: 1694, Mismatches: 269, Indels: 90
0.83 0.13 0.04
Matches are distributed among these distances:
946 87 0.05
947 457 0.27
948 220 0.13
949 586 0.35
950 340 0.20
951 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (943 bp):
AAAGTTCATCCTTAGAAAAAGACAAACATCAGTTCTCGTGACAGTCTCCACTCTTTTCAAGATTG
GGAACCAAGAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTGCAACAAAGGC
TTTTCTTTCACCATTTTTGATAAAATCAAAGTTTATCTCTCAAATAAGACAAACATGAATAGTTA
TATAAATCCCATTCTTTTCAGGATTAGGCACCAAAAACACAGTCTTCTCATAAGGTACATGATAT
TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGAC
TCAAATGAGACAAACTTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
ACATTCTCCATATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGAAAATCGTTTCTTTGCC
CTATTTTGCTTAAAATTAAGTTCATCTTTGAAAAAGACAAGCATCGATTCTCATGACAGTCTCCA
CTCTTTTCAAGATTGGGAACCAAGAACATATTCCCTTCATTAGGATACTTGACATTGATGCTTTG
GTGCTGCAATAAAGGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTATCACTTAAATAAG
ACAAACATGAATAGTCATACTAATCCCCATTTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
CATAAGGATACATGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTTCCTACTAATTTTTG
AAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTC
GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTTCTCTAGCA
TGAAATCTTTCTTTTCCTATTTTCCTTAAAATC
Found at i:2911954 original size:160 final size:159
Alignment explanation
Indices: 2911673--2912024 Score: 512
Period size: 160 Copynumber: 2.2 Consensus size: 159
2911663 AGGCACTCTA
*
2911673 AACACATTCTCC-TCATTAGGATAAGA-GATATTGATGATTTTCTCTAGCATGAAAATCTTTTCT
1 AACACATTC-CCTTCATTAGGATAA-ATGATATTGATGATTTTCTCTAGCATGAAAATATTTTCT
* * *
2911736 TTGCCCTATTTTCCTTAAAATCAAAGTACATTCTTTGAAAAAGACAAGAATCGATTCTCATGACA
64 TTGCCCTATTTTCCTTAAAATCAAAGTACATCCTTTAAAAAAGACAAGAATAGATTCTCATGACA
* *
2911801 GTCTCCACTCTTTTCAAGATTTG-GAACCAAG
129 GTCTCCACTCTTTCCAA-AATTGAGAACCAAG
***
2911832 AACACATTTTTTTCATTAGGATAAATGATATTGATGATTTTCTCTAGCAATGAAAATATTTTCTT
1 AACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTCTCTAGC-ATGAAAATATTTTCTT
* * * *
2911897 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCTTTAAAAAAGATAAGAATAGATTCTCGTGATAG
65 TGCCCTATTTTCCTTAAAATCAAAGTACATCCTTTAAAAAAGACAAGAATAGATTCTCATGACAG
2911962 TCTCCACTCTTTCCAAAATTGAGAACCAAG
130 TCTCCACTCTTTCCAAAATTGAGAACCAAG
* *
2911992 AACACATTCCCTTCATTAGGATACATGACATTG
1 AACACATTCCCTTCATTAGGATAAATGATATTG
2912025 GTGCTTTGGT
Statistics
Matches: 171, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
158 1 0.01
159 46 0.27
160 124 0.73
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (159 bp):
AACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATATTTTCTTT
GCCCTATTTTCCTTAAAATCAAAGTACATCCTTTAAAAAAGACAAGAATAGATTCTCATGACAGT
CTCCACTCTTTCCAAAATTGAGAACCAAG
Found at i:2912011 original size:635 final size:633
Alignment explanation
Indices: 2911212--2912475 Score: 1790
Period size: 635 Copynumber: 2.0 Consensus size: 633
2911202 CATTCTCCAT
* *
2911212 ATTACGATAAAGGATATTGATGATTTTCTCTAGCATGAAAATCGTTTCTTTGCCCTATTTTGCTT
1 ATTACGATAAAGGATATTGATGATTTTCTCTAGCATGAAAATAGTTTCTTTGCCCTATTTTCCTT
* * * * * *
2911277 AAAATTAATGTTCATCTCTAGAAAAAGACAAGCATTGATTCTTATGACAGTCTCCACTCTTTTCA
66 AAAATCAAAGTTCATCTCTAGAAAAAGACAAGAATAGATTCTCATGACAGTCTCCACTCTTTCCA
* * * * *
2911342 AGATTGGGAACCAAGAACATATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGT-TCCGCA
131 AAATTGAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT-CACA
* * * *
2911406 ATAAAAGCTTTTCTTTTCACTGTTTTTTATAGAATCAAAGTTT-ATCACTTAAATAAGACAAACA
195 AGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCAAAGTTTGA-CACTTAAATAAGACAAACA
* * *
2911470 TGACTAGTCATACTAATCCCCATTTTTTTC-AGTATTAGGCACCATAAACATTGTCTTCTCATAA
259 TGAATAGTCATACTAATCCCCATTCTTTTCAAG-ATTAGGCACCATAAACATAGTCTTCTCATAA
* ** * **
2911534 GGATACATGATATTGATGCTTTGGTGTCGCAAGAAAGGCTTTCTTC-CTGCAATTTTTGAAAAGC
323 GGATACAAGATATTGACACTTTGGTGTCGCAACAAAGGCTTTCTTCGCACCAATTTTTGAAAAGC
* * *
2911598 CTAAGTTTAAGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATA
388 CTAAGTTCAAGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCAGGATA
*
2911663 AGGCACTCTAAACACATTCTCCTCATTAGGAT-AAGAGATATTGATGATTTTCTCTAGCATGAAA
453 AGGCACTATAAACACATTCTCCTCATTAGGATAAAG-GATATTGATGATTTTCTCTAGCATGAAA
* * * *
2911727 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTAC-ATTCTTTGAAAAAGACAAGAATCGAT
517 ATCGTTCCTTTGCCCTATTTTCCTT-AAATCAAAGTACAACTC-CTGAAAAAGACAAGAATCGAT
*
2911791 TCTCATGA-CAGTCTCCACTCTTTTCAAGATTTGG-AACCAAGAACACATTTTTTTC
580 TCTCATGACCA-TCTCCACTATTTTCAAGA-TTGGCAACCAAGAACAC-TTTTTTTC
* * *
2911846 ATTAGGATAAATGATATTGATGATTTTCTCTAGCAATGAAAATATTTTCTTTGCCCTATTTTCCT
1 ATTACGATAAAGGATATTGATGATTTTCTCTAGC-ATGAAAATAGTTTCTTTGCCCTATTTTCCT
* * * *
2911911 TAAAATCAAAGTTCATCCTTTA-AAAAAGATAAGAATAGATTCTCGTGATAGTCTCCACTCTTTC
65 TAAAATCAAAGTTCAT-CTCTAGAAAAAGACAAGAATAGATTCTCATGACAGTCTCCACTCTTTC
*
2911975 CAAAATTGAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGGTGCTTTGGTGTCAC
129 CAAAATTGAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC
2912040 AAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCAAAGTTTGACACTTAAATAAGACAAACA
194 AAGAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCAAAGTTTGACACTTAAATAAGACAAACA
*
2912105 TGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTTTTCTCATAAG
259 TGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * ** *
2912170 GATACAAGATATTGACATTTTGGTTTCGCAACAAAGGCTTTTTTCGCACCAATTTTTGAATTGTC
324 GATACAAGATATTGACACTTTGGTGTCGCAACAAAGGCTTTCTTCGCACCAATTTTTGAAAAGCC
** * * * ** *
2912235 TAAGTTCGTGACTCAAATGAGACAAACTTGGATTCTAGTATTGATCTTTATTCATTTTGGGATTA
389 TAAGTTCAAGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCAGGATAA
*
2912300 GGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGGAAAT
454 GGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGAAAAT
* * * *
2912365 CGTTCCTTTGCCCTATTTTGCTTAAATCAAAGTTCAACTCCTGAAAAAGATAAGCATCGATTCTC
519 CGTTCCTTTGCCCTATTTTCCTTAAATCAAAGTACAACTCCTGAAAAAGACAAGAATCGATTCTC
*
2912430 GTGACCATCTCCACTATTTTCAAGATTGGCAACCAAGAACACTTTT
584 ATGACCATCTCCACTATTTTCAAGATTGGCAACCAAGAACACTTTT
2912476 CCTTCCCTAG
Statistics
Matches: 556, Mismatches: 64, Indels: 20
0.87 0.10 0.03
Matches are distributed among these distances:
634 40 0.07
635 353 0.63
636 160 0.29
637 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (633 bp):
ATTACGATAAAGGATATTGATGATTTTCTCTAGCATGAAAATAGTTTCTTTGCCCTATTTTCCTT
AAAATCAAAGTTCATCTCTAGAAAAAGACAAGAATAGATTCTCATGACAGTCTCCACTCTTTCCA
AAATTGAGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAA
GAAAAGCTTTTCTTTCCACTGTTTTTGATAAAATCAAAGTTTGACACTTAAATAAGACAAACATG
AATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
TACAAGATATTGACACTTTGGTGTCGCAACAAAGGCTTTCTTCGCACCAATTTTTGAAAAGCCTA
AGTTCAAGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCAGGATAAGG
CACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGAAAATCG
TTCCTTTGCCCTATTTTCCTTAAATCAAAGTACAACTCCTGAAAAAGACAAGAATCGATTCTCAT
GACCATCTCCACTATTTTCAAGATTGGCAACCAAGAACACTTTTTTTC
Found at i:2929156 original size:13 final size:13
Alignment explanation
Indices: 2929138--2929162 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2929128 AGATTGCACA
2929138 GTATCGATACATT
1 GTATCGATACATT
2929151 GTATCGATACAT
1 GTATCGATACAT
2929163 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2929175 original size:20 final size:21
Alignment explanation
Indices: 2929150--2929202 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
2929140 ATCGATACAT
*
2929150 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
2929170 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
2929191 TGTATCGATACA
1 TGTATCGATACA
2929203 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:2929280 original size:13 final size:13
Alignment explanation
Indices: 2929262--2929287 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2929252 TACACACAAG
2929262 ATGTATCGATACA
1 ATGTATCGATACA
2929275 ATGTATCGATACA
1 ATGTATCGATACA
2929288 TTGGCTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2935883 original size:476 final size:475
Alignment explanation
Indices: 2934717--2941158 Score: 7048
Period size: 476 Copynumber: 13.6 Consensus size: 475
2934707 GATTTTCCAC
* * * * * *
2934717 AGTCTTCTTATAAAG-TACACGATATTGACACTTTGGTTTCTCAAGAAAAGCTTTCTTCCCACCA
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CTA
** * * * *
2934781 ATTTTTGAAAAGTCTAAGTTCGCGACTCAAATGAGACAAACTTGGATTC-AGGTATTGATCTTAA
65 ATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTA-GTAATGATCTTCA
* * * *
2934845 TTCATTTTGTGATTAGGTACTATAAACATAATCTCCTTATTAGGATAAAGGATATTGATGATTTT
129 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTT
* * * *
2934910 CTCTAGCATGGAAATCGTTTCTTTACCCTATTTTGCTTAAAATTAAAGTTTATTCCTAGAAAAAG
194 CTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCCCTAGAAAAAG
* **
2934975 ACAAGCATCGATTCTCGTGACAGTATCCACTCTTTTCAAGATT-GGAACCAAGAACACATTCTAT
259 ACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
* * * *
2935039 TCATTAGGATACAAGACATTGATGCTTT-G-G-TG-------GGCTTTTCTTTCAACCGTTGTTA
324 TCATTAGGATACATGACATTGATGCTTTGGTGCTGCAATAAAGGCTTTTCTTTCCACCGTTTTTG
* * * * *
2935094 ATAGAATCAAAGTTTATCTCTCAAATAAGACAAACATGAATAGTTATATTAATTCCCATTTTTTT
389 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
* *
2935159 CAGGATTAGGCACCAAAAACAC
454 CAGGATTAGGCACCATAAACAT
* * * ** ** *
2935181 AGTGTTCTCATATGG-TACACGATATTAACGCTTTGGTTTCGTGAGAAAAACTTTCTTCCCACCA
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CTA
* * * * * *
2935245 ATATTT-AGAAGTCTAAATTCATGACTCAAATGAGACAAACTTGGATTCTAGTATTGATCTTCAT
65 ATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * *
2935309 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGGATAAGGGATATTGATAATTTTC
130 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTTC
* ** * *
2935374 ACTAGCATGGAAATCGATTCTTTGCCCTATTTTGCTTTAAATTAAAGTTCGTCCCTAGAAAAAGA
195 TCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCCCTAGAAAAAGA
* *
2935439 CAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGAAACCAAGAACGCATTCCCTT
260 CAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * * ** *
2935504 CATTAGGATACTTGACATTGATGCTTTGGTGCTACAACAAAGGCTTTGCTTTCCACTATTTTTCA
325 CATTAGGATACATGACATTGATGCTTTGGTGCTGCAATAAAGGCTTTTCTTTCCACCGTTTTTGA
* ** * * * *
2935569 TAGAATCAAAGTTTGTCAGTTAAACAAGACAAACATTAATAGTCATACTAATCCCTATTATTTTC
390 TAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
** * *
2935634 AGGATTAGGCTTCATAAGCGT
455 AGGATTAGGCACCATAAACAT
* * * * *
2935655 AGTCTTCTCATAAGGATATATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCCTTA
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCCTA
* ** * *
2935720 ATTTTTGAAAAGTTTAAGTTTGTGCCTCAAATGAAACAGACATGGATTCTAGTAATGATCTTCAT
65 ATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * * *
2935785 TCTTTTTATGATTAGGCACTGTAAACACATT-TCCCTCATTAGGATAAAGGTTATTGATGATTTT
130 TCATTTTGTGATTAGGCACTATAAACACATTCT-CCTCATTAGGATAAAGGATATTGATGATTTT
** * * * * *
2935849 CTCTAGCATAAAAATCGTTTCTTTACCTTATTTTGCTTAAAATTAAAGTTTATTCCTAGAAAAAG
194 CTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCCCTAGAAAAAG
* * * ** *
2935914 ACAAGCATCGATTCTCATGGCAATCTCTTCTCTTTTCAAGATTGAGAACCAAGAACACATTCCCT
259 ACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
* * * * * * * * *
2935979 TTATTAGGATACAAGAAATTGTTGTTTTGGTGCTGCAACAAAGGATTTTCTTTCAATCGTTTTTG
324 TCATTAGGATACATGACATTGATGCTTTGGTGCTGCAATAAAGGCTTTTCTTTCCACCGTTTTTG
* * * *
2936044 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATAAATAGTTAT-CTTTATCCTCATTCTTT
389 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATAC-TAATCCCCATTCTTT
* * * *
2936108 TGAAGATTAGGCACCAAAAACAC
453 TCAGGATTAGGCACCATAAACAT
*
2936131 AGTGC-TCTCATAAGG-TACACGTTATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTTCCACC
1 AGT-CTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCC-CC
** * * *
2936194 -AATTTTTGAAAAGTCTAAGTTTGTGACTCAAATGAGACAAACTTGGATTCTAGTATTGATCTTC
63 TAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* **
2936258 ATTCATTTTGTGATTAAGCACTATAAACATTTTCTCCTCATTAGGATAAAGGATATTGATGATTT
128 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTT
* * * *
2936323 TCTCTAACATGGAAATCGTTTT-TTTGCCTTATTTTGCTTAAAGTTATAGTTCATCCCTAGAAAA
193 TCTCTAGCATGGAAATC-TTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCCCTAGAAAA
* * * ** * *** *
2936387 A-AAAAACATCGATTGTCGTGGTAGTCTCCACTCTTTTCAAGATTAGGAGGTAAGAACACATTTC
257 AGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCC
* * * ** *
2936451 CTTCATTATGATATAAGACATTGATGCTTTGGTGCCACAATAAAGGCTTTTCTTT-CACCCTTTT
322 CTTCATTAGGATACATGACATTGATGCTTTGGTGCTGCAATAAAGGCTTTTCTTTCCA-CCGTTT
* ** ** * *
2936515 TTGATATAATCAAAGTTTATCTCCCAAATAAGACAAACATGAATAGTTGTATTAAT-CTCATTCT
386 TTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* * *
2936579 TTTCAGGATTCGACACCAAAAACAT
451 TTTCAGGATTAGGCACCATAAACAT
*
2936604 AGTCTTCTCATAAGG-TACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCAACTA
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-CCTA
* * * *
2936668 ATTTTTGAAAAGTTTAAGTTTC-TGACTCAAATGAGACAAACTTGGATTCTAGTATTGATCTTCA
65 ATTTTTGAAAAGTCTAAG-TTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* * ** *
2936732 TTCATTTTATGATTAAGCACTATAAACATTTTCTCTTCATTAGGATAAAGGATATTGATGATTTT
129 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTT
* * ** ** *
2936797 CTCTAGCATGGAAATCATTTCTTTGCCATATTTTGCTTAAAATTAAAGTTCATCTTTACTAAAGG
194 CTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCCCTAGAAAAAG
* * ** * * * *
2936862 ATAAACATCGATTCTAATGATAGTCTTCACTC--TTCAAGATTAGGATCCAAGAACACATTCCCT
259 ACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
* * * *
2936925 TC-TTGAGGATA-ATTGACATTGATGCTTTGGTGCAGCAATAAAAGCTTGTCTTTCCACCCCTTT
324 TCATT-AGGATACA-TGACATTGATGCTTTGGTGCTGCAATAAAGGCTTTTCTTTCCA-CCGTTT
* * * *
2936988 TTGATAGAATCAAAGTTTGTCACTTAAAAAACG-CAAACATGAATAGTCATACTAATCCCCATTA
386 TTGATAGAATCAAAGTTTATCTCTTAAATAA-GACAAACATGAATAGTCATACTAATCCCCATTC
* * * * **
2937052 TTTTTAGGATCAGGTATCATATGCAT
450 TTTTCAGGATTAGGCACCATAAACAT
* * * * * * *
2937078 AGACTTCTCATAAGGATATACGATTTTGATGC-CTCGTTTCGCAAGAAAGGCTTTTTTTCCCCTA
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCCTA
* * *
2937142 ATTTCTGAAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGTATTCTAGTAATGATCTTCAT
65 ATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * * * * * * *
2937207 TCTTTTTGTGATTTGGCATTGTAAACACATTCCCCTTATTAGGATAAAGGACATTAATGATTTTC
130 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTTC
* * * ** * *
2937272 CCTAGCATGGAAATCATTTGTTTGCTTTATTTTGCTTAAAATTAGAGTTCATCCCTCGAAAAAGA
195 TCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCCCTAGAAAAAGA
* * * * * * *
2937337 CAA-CTGTCGACTCTCGTGACAGTCTCCGCTATTTTCAAGATTGGGAACCACGAACGCATTTCCT
260 CAAGC-ATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
* * * * *
2937401 TCATTAGGATACAAGACATTAATGCTTTGGTGCCGCAATAAAGGAC-TTTCTTTCAACCATTTTT
324 TCATTAGGATACATGACATTGATGCTTTGGTGCTGCAATAAAGG-CTTTTCTTTCCACC-GTTTT
* * * * * * *
2937465 TGATAGAATCAAAGTTTGTCCCTCAAA-AAGACAAAAATGAATCGTTATATTAATCCCCATTCTT
387 TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* *
2937529 TTCAGGATTAGAG-ACCAAAAACAC
452 TTCAGGATTAG-GCACCATAAACAT
* * * * * *
2937553 AGTCTTCACATATGG-TACACGATATTGACACTTTGGTTTCACAAGAAAGGCATTCTTCCCACCA
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CTA
* ** * * * * *
2937617 ATTTTTGAAAGGTCTAAGTTTGTGACTCAAATGAGATAAACTTGGATTTTAGTATTGATCTTCAT
65 ATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * * *
2937682 TCATTTTATGATTAAGCACTATAAACACTTTCTCCTCATTAGGATAAAGGCTATTGATGATTTTC
130 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTTC
* * * *
2937747 TCTAGTATGAAAAT-TGTTTCTTTGCCCGATTTTGCTTAAAATTAAAGTTCATCCCTGGAAAAA-
195 TCTAGCATGGAAATCT-TTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCCCTAGAAAAAG
* *
2937810 ACAAGCATCGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGGGAACTAAGAACACATTCCCT
259 ACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
* * * * * *
2937875 TCATTAGGACATAAGACATTGATGCTTTGGTGCTGCAATAAAAGCTTTTCTTCCCACTGTTTTTG
324 TCATTAGGATACATGACATTGATGCTTTGGTGCTGCAATAAAGGCTTTTCTTTCCACCGTTTTTG
* * * * *
2937940 ATAGAATCAAAGTTTATCACTTAAATAAGATAAACATGAATATTTACACTAATCCCCATTCTTTT
389 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTT
*
2938005 CAGGATTAGGCACCATAAGCAT
454 CAGGATTAGGCACCATAAACAT
* * *
2938027 AGTCTTCTCATAAGGATATA-GAATATTGACGCTTTGGTTTTGCAAGAAAAGCTTTCTTCCTCCT
1 AGTCTTCTCATAAGGATACACG-ATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-CCT
* * * *
2938091 AATTTTTGAAGAGTCTAAGTTCATGTCTCAAATAAGACAAACATGGATTTTAGTAATGATCTTCA
64 AATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* * * * *
2938156 TTCTTTTTGTGATTAGGCACTGTAAACACATTCTTCTCATTATGATAAATGATATTGATGATTTT
129 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTT
** * * * * * *
2938221 CTCTAATATGGAAATCTTTTCCTCGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTGAAAAGG
194 CTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCCCTAGAAAAAG
* * ** * ** *
2938286 ATAAGCATCAATTCTTATGAGAGTCTCCACTCTTTTCAAGATTTAGAACCAAGAATACATTCCCT
259 ACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
* * * *
2938351 TCTTTGAGG-TACATGACATTGATGCTTTGGTG-TCGCAATAAAAGCTTTTCTTTCCATCATTTT
324 TCATT-AGGATACATGACATTGATGCTTTGGTGCT-GCAATAAAGGCTTTTCTTTCCACCGTTTT
* * * *
2938414 TGGTAGAATCAAAGTTTATCACTTAAATAAGATAAACATGTATAGTCATACTAATCCCCATTCTT
387 TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* *
2938479 TTCATGATTCGGCACCATAAACAT
452 TTCAGGATTAGGCACCATAAACAT
* * * * *
2938503 AGTCTTCTCATAAGGATATACGATATT-ACCGCATTGGTTTTGCAAGAAGGGCTTCCTTTCTCCC
1 AGTCTTCTCATAAGGATACACGATATTGA-CGCTTTGGTTTCGCAAGAAAGGCTTTC-TTC-CCC
* * *
2938567 -AATTTTTGAAAAGTCTAAGTTCATACCTCAAATGAGACAAAAATGGATTCTAGTAACGATCTTC
63 TAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
*** * * * * *
2938631 ATTCATTTCCCGATTAGGCACTGA-AAACACATTATCTTCGTTAAGATAAATGATATTGATGATT
128 ATTCATTTTGTGATTAGGCACT-ATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATT
* * ** * * * * *
2938695 TTCTTTTGCATAAAAATCTTTTTTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTA-AAT
192 TTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCCC-TAGAAA
* * * * * * * *
2938759 ATGACAAGCATCGATTCTTGTAACAATCTCTATTCTTTTCAAGATTGGGAACTAAGAACACAATC
256 AAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTC
* * * * *
2938824 CCTTCATTAGGAAACATGACATT-ATTGCTTTGGTG-TCGCGATAAAGGCTTTTCTTTCGACTGC
321 CCTTCATTAGGATACATGACATTGA-TGCTTTGGTGCT-GCAATAAAGGCTTTTCTTTCCACCGT
* * * *
2938887 TTTTGATAGAATCAAAGTTCATCTTTTAAATAAGACAAACATGTATAGTCATACTAATCCCTATT
384 TTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATT
**
2938952 CTTTTCAGGATTTCGCACCATAAACAT
449 CTTTTCAGGATTAGGCACCATAAACAT
* * * *
2938979 AGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCTACTA
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-CCTA
* * * * ** * *
2939044 GTTTTTGAAAAGTCTATGTTCATGCCTCAAAAGAGACAAACATGGATTCTAGAAAAAATCATCAA
65 ATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * * *
2939109 TCATTTCGTGATTAGGCACTATAAACACAGTCTCCTAATTAGGATAAACGATATTGATGATTTTC
130 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTTC
* * * * * * * *
2939174 TCTAGCATGGAAATCTTTTCTTTACCCAATTTTCCTTAAAGTCAAAGTTCATTTCTTA-AAAAAA
195 TCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCA-TCCCTAGAAAAAG
* * * *
2939238 ACAAGCAAT-GATTCTCGTGATAGACTCCACTCTTTTCAAGCTTGGGAACCAAGAAAACATTCCC
259 ACAAGC-ATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCC
* * * *
2939302 TTC---AGGATACATCACATTGATACTTTGG-GTTGCAATAAAGGCTTTTCTTT-CATCCATTTT
323 TTCATTAGGATACATGACATTGATGCTTTGGTGCTGCAATAAAGGCTTTTCTTTCCA-CCGTTTT
* * * * * *
2939362 TGACAGAATCAAAGTTTGTATCTCAAATAAGACAAACGTGAATAGTCATACTAATCCCCATGCTT
387 TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* * * *
2939427 TTCAAGAATGGGCACCATAAATAT
452 TTCAGGATTAGGCACCATAAACAT
* * *
2939451 AGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGGTTTCTCCCCCTCC
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCT--
* * *
2939516 AATTTTTGAAAAGTCTAAGTTCGTGCCTCGAACGAGACAAACATGGATTCTAGTAATGATCTTCA
64 AATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* ** * * *
2939581 TTCATTTTTTGATTAGGCTGTATAAACACATTCTCCTAATTTGGATAAATGATATTGATGATTTT
129 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTT
* * * * *
2939646 CTCTACCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAAAAAA
194 CTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATC-CCTAGAAAAA
* * * *
2939711 GACAAGCATTGATTCTCATGACAATCTCTACTCTTTTCAAGATTGGGAACCAAGAACACATTCCC
258 GACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCC
* ** * * *
2939776 TTCATTAGGATCCATGATGTTGATGCTCTGGTG-TCGCAATAAAGGCTTTTCTTTCAACCATTTT
323 TTCATTAGGATACATGACATTGATGCTTTGGTGCT-GCAATAAAGGCTTTTCTTTCCACCGTTTT
* * * * *
2939840 TGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAATATGAATAGTCAAACTAATCCCAATTCTT
387 TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTT
* * * *
2939905 TTCGGGATAACGCACAATAAACAT
452 TTCAGGATTAGGCACCATAAACAT
* * *
2939929 AGTCTTCTCATAAGGATACATGATATTGATC-CTCTGGTTTCGCAAGAAAAGCTTTCTTCCCACT
1 AGTCTTCTCATAAGGATACACGATATTGA-CGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CT
* * * * * *
2939993 AATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAGATAAACTTGGATTCTCGTAATAATCTTCA
64 AATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* * *
2940058 TTCATTTTGTGATTAGGTACTATAAACACATTCTTCTCATTAGGATAAATGATATTGATGATTTT
129 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTT
* * * * * * ** *
2940123 CTCTAGCATAGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCTTTA-ACTAT
194 CTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCC-CTAGAAAAA
* * * * * * *
2940187 GACAAGCATCAATTCTCCTAACGGTCTCCATTCTTTTCTAGATTAGGAACCAAGAACACATTCCC
258 GACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCC
* ** *
2940252 TTCATTAGGATA-ATGACATTGATGCTTTGGTG-TCGTAATAAAAGTTTTTTTTTTCCACCGTTT
323 TTCATTAGGATACATGACATTGATGCTTTGGTGCT-GCAAT-AAAGGCTTTTCTTTCCACCGTTT
* *
2940315 TTGATAGAATCAAAGTTTATCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCTATTCT
386 TTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT
* *
2940380 ATTCAAGATTAGGCACCATAAACAT
451 TTTCAGGATTAGGCACCATAAACAT
* * * * * * * *
2940405 AGTCTTCTTATAATGATACACGGTATTAATGTTTTGGTTTCACAA-AAATGGCTTTCTTTGCACC
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAA-GGCTTTC-TT-CCCC
* **
2940469 -AATTTTTGAAAAGTCTAAGTTCGTATCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
63 TAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* * * * * * *
2940533 ATTCATTTTGTGATTAGGCACTATAAACACGTTCTGCTCTTTAGGATAAATGATATTAAAGACTT
128 ATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTT
* * * * * *
2940598 TCTGTAGCATGAAAATCTTTTCGTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCCT---AAA
193 TCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCA-TCCCTAGAAAA
* * * * * * * *
2940660 AGACAAGCATCAATTTTCGTGATAGTTTTCGCTTTTTTCAAGATTGGGAACCAAGAACACATTCT
257 AGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCC
* * * * * * * *
2940725 CTTCCTTAGGATATAAGACATTAATGCTTTGGT-CTCGTAAACAAAAGCTTTTCTTTCAACCGTT
322 CTTCATTAGGATACATGACATTGATGCTTTGGTGCT-G-CAATAAAGGCTTTTCTTTCCACCGTT
* * * * *
2940789 TTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATTGTCACACTAATCCCAATTC
385 TTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTC
* * *
2940854 TTTTCGGGGTAAGGCACCATAAACAT
450 TTTTCAGGATTAGGCACCATAAACAT
*
2940880 AGTCTTCTCATAAGGATACATGATATTGATC-CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACT
1 AGTCTTCTCATAAGGATACACGATATTGA-CGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CT
* ** * *
2940944 AATCTTTGTGAAGTCTAAGTTCATGCCTCAAATGAGACAAACTTGGATTCTAGTAATGATCTTTA
64 AATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* *
2941009 TTCATTTTGTGATTAGG-TCTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTT
129 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTT
* * * *
2941073 CTCTAGCATGGAAATCTTTTCTTT-ACCTATTTTCCTTAAAATTAAAGTTCA-CCTTTTAAAAAA
194 CTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCC--CTAGAAAA
2941136 AGACAAGCATCGATTCTCGTGAC
257 AGACAAGCATCGATTCTCGTGAC
2941159 GTTGATACTT
Statistics
Matches: 5034, Mismatches: 836, Indels: 204
0.83 0.14 0.03
Matches are distributed among these distances:
463 210 0.04
464 103 0.02
465 1 0.00
466 1 0.00
467 1 0.00
471 8 0.00
472 233 0.05
473 557 0.11
474 889 0.18
475 975 0.19
476 1685 0.33
477 212 0.04
478 156 0.03
479 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (475 bp):
AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCTAA
TTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
CATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTTCT
CTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCCCTAGAAAAAGAC
AAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
ATTAGGATACATGACATTGATGCTTTGGTGCTGCAATAAAGGCTTTTCTTTCCACCGTTTTTGAT
AGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCA
GGATTAGGCACCATAAACAT
Found at i:2939948 original size:950 final size:949
Alignment explanation
Indices: 2934717--2941158 Score: 7046
Period size: 950 Copynumber: 6.8 Consensus size: 949
2934707 GATTTTCCAC
* * * * * *
2934717 AGTCTTCTTATAAAG-TACACGATATTGACACTTTGGTTTCTCAAGAAAAGCTTTCTTCCCACCA
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCTCCA
* * * *
2934781 ATTTTTGAAAAGTCTAAGTTCGCGACTCAAATGAGACAAACTTGGATTC-AGGTATTGATCTTAA
66 ATTTTTGAAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTA-GTAATGATCTTCA
* * * * *
2934845 TTCATTTTGTGATTAGGTACTATAAACATAATCTCCTTATTAGGATAAAGGATATTGATGATTTT
130 TTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTT
* * * *
2934910 CTCTAGCATGGAAATCGTTTCTTTACCCTATTTTGCTTAAAATTAAAGTTTAT-TCCTAGAAAAA
195 CTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCTCCTAGAAAAA
* * **
2934974 GACAAGCATCGATTCTCGTGACAGTATCCACTCTTTTCAAGATT-GGAACCAAGAACACATTCTA
260 GACAAGCATCGATTCTCGTGACAGTCTCTACTCTTTTCAAGATTGGGAACCAAGAACACATTCCC
* * *
2935038 TTCATTAGGATACAAGACATTGATGCTTTGGT--G-------GGCTTTTCTTTCAACCGTTGTTA
325 TTCATTAGGATACATGACATTGATGCTTTGGTGCGCAATAAAGGCTTTTCTTTCAACCGTTTTTG
* * * *
2935094 ATAGAATCAAAGTTTATCTCTCAAATAAGACAAACATGAATAGTTATATTAATTCCCATTTTTTT
390 ATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAA-TCCCATTCTTTT
* * * * *
2935159 CAGGATTAGGCACCAA-AAACACAGTGTTCTCATATGG-TACACGATATTAACGCTTTGGTTTCG
454 CAGGATTAGGCA-CAATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCG
** ** * * * * *
2935222 TGAGAAAAACTTTCTTCCCACCAATATTT-AGAAGTCTAAATTCATGACTCAAATGAGACAAACT
518 CAAGAAAGGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACT
* *
2935286 TGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAG
583 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG
* * * ** * *
2935351 GATAAGGGATATTGATAATTTTCACTAGCATGGAAATCGATTCTTTGCCCTATTTTGCTTTAAAT
648 GATAAAGGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* *
2935416 TAAAGTTC-GTCCCTAGAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGAT
713 TAAAGTTCATTCCTTA-AAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGAT
* * * ** *
2935480 TGGAAACCAAGAACGCATTCCCTTCATTAGGATACTTGACATTGATGCTTTGGTGCTACAACAAA
777 TGGGAACCAAGAACACATTCCCTTC--TAGGATACATGACATTGATGCTTTGGTGCCGCAATAAA
* * * * * *
2935545 GGCTTTGCTTTCCACTATTTTTCATAGAATCAAAGTTTGTCAGT-T-AAACAAGACAAACATTAA
840 GGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTAT-A-TCTCAAATAAGACAAACATGAA
* * ** * *
2935608 TAGTCATACTAATCCCTATTATTTTCAGGATTAGGCTTCATAAGCGT
903 TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * *
2935655 AGTCTTCTCATAAGGATATATGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTTCCCT-T
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCTCC
* * * * *
2935719 AATTTTTGAAAAGTTTAAGTTTGTGCCTCAAATGAAACAGACATGGATTCTAGTAATGATCTTCA
65 AATTTTTGAAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* * *
2935784 TTCTTTTTATGATTAGGCACTGTAAACACATT-TCCCTCATTAGGATAAAGGTTATTGATGATTT
130 TTCATTTTATGATTAGGCACTATAAACACATTCT-CCTCATTAGGATAAAGGATATTGATGATTT
* * * * *
2935848 TCTCTAGCATAAAAATCGTTTCTTTACCTTATTTTGCTTAAAATTAAAGTTTAT-TCCTAGAAAA
194 TCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCTCCTAGAAAA
* * * * *
2935912 AGACAAGCATCGATTCTCATGGCAATCTCTTCTCTTTTCAAGATTGAGAACCAAGAACACATTCC
259 AGACAAGCATCGATTCTCGTGACAGTCTCTACTCTTTTCAAGATTGGGAACCAAGAACACATTCC
* * * * * * * *
2935977 CTTTATTAGGATACAAGAAATTGTTGTTTTGGTGCTGCAACAAAGGATTTTCTTTCAATCGTTTT
324 CTTCATTAGGATACATGACATTGATGCTTTGGTGC-GCAATAAAGGCTTTTCTTTCAACCGTTTT
* * *
2936042 TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATAAATAGTTAT-CTTTATCCTCATTCT
388 TGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATAC-TAATCC-CATTCT
* * * * *
2936106 TTTGAAGATTAGGCACCAA-AAACACAGTGC-TCTCATAAGG-TACACGTTATTGACGCTTTGGT
451 TTTCAGGATTAGGCA-CAATAAACATAGT-CTTCTCATAAGGATACACGATATTGATGCTTTGGT
* * ** *
2936168 TTCGCAAGAAAGGCTTTCTTTCCACCAATTTTTGAAAAGTCTAAGTTTGTGACTCAAATGAGACA
514 TTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACA
* * **
2936233 AACTTGGATTCTAGTATTGATCTTCATTCATTTTGTGATTAAGCACTATAAACATTTTCTCCTCA
579 AACTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCA
* * *
2936298 TTAGGATAAAGGATATTGATGATTTTCTCTAACATGGAAATCGTTTT-TTTGCCTTATTTTGCTT
644 TTAGGATAAAGGATATTGATGATTTTCTCTAGCATGGAAATC-TTTTCTTTGCCCTATTTTCCTT
* * * * * * **
2936362 AAAGTTATAGTTCA-TCCCTAGAAAAA-AAAAACATCGATTGTCGTGGTAGTCTCCACTCTTTTC
708 AAAATTAAAGTTCATTCCTTA-AAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTC
* *** * * * * *
2936425 AAGATTAGGAGGTAAGAACACATTTCCTTCATTATGATATAAGACATTGATGCTTTGGTGCCACA
772 AAGATTGGGAACCAAGAACACATTCCCTTC--TAGGATACATGACATTGATGCTTTGGTGCCGCA
* * * *
2936490 ATAAAGGCTTTTCTTT-CACCCTTTTTTGATATAATCAAAGTTTATCTCCCAAATAAGACAAACA
835 ATAAAGGCTTTTCTTTCCA-CCATTTTTGATAGAATCAAAGTTTATATCTCAAATAAGACAAACA
** * * * * *
2936554 TGAATAGTTGTATTAAT-CTCATTCTTTTCAGGATTCGACACCAAAAACAT
899 TGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
** *
2936604 AGTCTTCTCATAAGG-TACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCAACTA
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCTCCA
* * *
2936668 ATTTTTGAAAAGTTTAAGTTTC-TGACTCAAATGAGACAAACTTGGATTCTAGTATTGATCTTCA
66 ATTTTTGAAAAGTCTAAG-TTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* ** *
2936732 TTCATTTTATGATTAAGCACTATAAACATTTTCTCTTCATTAGGATAAAGGATATTGATGATTTT
130 TTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTT
* * * * ** *
2936797 CTCTAGCATGGAAATCATTTCTTTGCCATATTTTGCTTAAAATTAAAGTTCATCT-TTACTAAAG
195 CTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCTCCTAGAAAAA
* * ** * * *
2936861 GATAAACATCGATTCTAATGATAGTCT-TCACTC--TTCAAGATTAGGATCCAAGAACACATTCC
260 GACAAGCATCGATTCTCGTGACAGTCTCT-ACTCTTTTCAAGATTGGGAACCAAGAACACATTCC
* * * *
2936923 CTTC-TTGAGGATA-ATTGACATTGATGCTTTGGTGCAGCAATAAAAGCTTGTCTTTCCACCCCT
324 CTTCATT-AGGATACA-TGACATTGATGCTTTGGTGC-GCAATAAAGGCTTTTCTTT-CAACCGT
* * *
2936986 TTTTGATAGAATCAAAGTTTGTCACTTAAAAAACG-CAAACATGAATAGTCATACTAATCCCCAT
385 TTTTGATAGAATCAAAGTTTATCTCTTAAATAA-GACAAACATGAATAGTCATACTAAT-CCCAT
* * * * ** * * * * *
2937050 TATTTTTAGGATCAGGTATC-ATATGCATAGACTTCTCATAAGGATATACGATTTTGATGC-CTC
448 TCTTTTCAGGATTAGGCA-CAATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTG
* * *
2937113 GTTTCGCAAGAAAGGCTTTTTTTCCC-CTAATTTCTGAAAAGTCTAAGTTCATACCTCAAATGAG
512 GTTTCGCAAGAAAGGC-TTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAG
* * * * * * *
2937177 ACAAACATGTATTCTAGTAATGATCTTCATTCTTTTTGTGATTTGGCATTGTAAACACATTCCCC
576 ACAAACTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC
* * * * * * ** *
2937242 TTATTAGGATAAAGGACATTAATGATTTTCCCTAGCATGGAAATCATTTGTTTGCTTTATTTTGC
641 TCATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCC
* * ** * * * *
2937307 TTAAAATTAGAGTTCATCCCTCGAAAAAGACAA-CTGTCGACTCTCGTGACAGTCTCCGCTATTT
706 TTAAAATTAAAGTTCATTCCTTAAAAAAGACAAGC-ATCGATTCTCGTGACAGTCTCCACTCTTT
* * * * *
2937371 TCAAGATTGGGAACCACGAACGCATTTCCTTCATTAGGATACAAGACATTAATGCTTTGGTGCCG
770 TCAAGATTGGGAACCAAGAACACATTCCCTTC--TAGGATACATGACATTGATGCTTTGGTGCCG
* * **
2937436 CAATAAAGGAC-TTTCTTTCAACCATTTTTTGATAGAATCAAAGTTTGTCCCTCAAA-AAGACAA
833 CAATAAAGG-CTTTTCTTTCCACCA-TTTTTGATAGAATCAAAGTTTATATCTCAAATAAGACAA
* * * * * *
2937499 AAATGAATCGTTATATTAATCCCCATTCTTTTCAGGATTAGAG-ACCAAAAACAC
896 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAG-GCACCATAAACAT
* * * * * *
2937553 AGTCTTCACATATGG-TACACGATATTGACACTTTGGTTTCACAAGAAAGGCATTCTTCCCACCA
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCTCCA
* * * * * *
2937617 ATTTTTGAAAGGTCTAAGTTTGTGACTCAAATGAGATAAACTTGGATTTTAGTATTGATCTTCAT
66 ATTTTTGAAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * *
2937682 TCATTTTATGATTAAGCACTATAAACACTTTCTCCTCATTAGGATAAAGGCTATTGATGATTTTC
131 TCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTTC
* * *
2937747 TCTAGTATGAAAAT-TGTTTCTTTGCCCGATTTTGCTTAAAATTAAAGTTCATC-CCTGGAAAAA
196 TCTAGCATGAAAATCT-TTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCTCCTAGAAAAA
* * *
2937810 -ACAAGCATCGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGGGAACTAAGAACACATTCCC
260 GACAAGCATCGATTCTCGTGACAGTCTCTACTCTTTTCAAGATTGGGAACCAAGAACACATTCCC
* * * * * * *
2937874 TTCATTAGGACATAAGACATTGATGCTTTGGTGCTGCAATAAAAGCTTTTCTTCCCACTGTTTTT
325 TTCATTAGGATACATGACATTGATGCTTTGGTGC-GCAATAAAGGCTTTTCTTTCAACCGTTTTT
* * * * *
2937939 GATAGAATCAAAGTTTATCACTTAAATAAGATAAACATGAATATTTACACTAATCCCCATTCTTT
389 GATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAAT-CCCATTCTTT
* * * * *
2938004 TCAGGATTAGGCACCATAAGCATAGTCTTCTCATAAGGATATA-GAATATTGACGCTTTGGTTTT
453 TCAGGATTAGGCACAATAAACATAGTCTTCTCATAAGGATACACG-ATATTGATGCTTTGGTTTC
* * * *
2938068 GCAAGAAAAGCTTTCTTCCTC-CTAATTTTTGAAGAGTCTAAGTTCATGTCTCAAATAAGACAAA
517 GCAAGAAAGGCTTTCTTCC-CACTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAA
* * * * *
2938132 CATGGATTTTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTGTAAACACATTCTTCTCATT
581 CTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* * ** * * *
2938197 ATGATAAATGATATTGATGATTTTCTCTAATATGGAAATCTTTTCCTCGCCCTATTTTTCTTAAA
646 AGGATAAAGGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * * * * * ** *
2938262 ATCAAAGTTCATCCCTTGAAAAGGATAAGCATCAATTCTTATGAGAGTCTCCACTCTTTTCAAGA
711 ATTAAAGTTCATTCCTTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGA
** * *
2938327 TTTAGAACCAAGAATACATTCCCTTCTTTGAGG-TACATGACATTGATGCTTTGGTGTCGCAATA
776 TTGGGAACCAAGAACACATTCCCTTC--T-AGGATACATGACATTGATGCTTTGGTGCCGCAATA
* * * * * *
2938391 AAAGCTTTTCTTTCCATCATTTTTGGTAGAATCAAAGTTTATCA-CTTAAATAAGATAAACATGT
838 AAGGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTAT-ATCTCAAATAAGACAAACATGA
* *
2938455 ATAGTCATACTAATCCCCATTCTTTTCATGATTCGGCACCATAAACAT
902 ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * *
2938503 AGTCTTCTCATAAGGATATACGATATT-ACCGCATTGGTTTTGCAAGAAGGGCTTCCTT-TCTCC
1 AGTCTTCTCATAAGGATACACGATATTGA-CGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCT-C
* * *
2938566 CAATTTTTGAAAAGTCTAAGTTCAT-ACCTCAAATGAGACAAAAATGGATTCTAGTAACGATCTT
64 CAATTTTTGAAAAGTCTAAGTTCGTGA-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
*** * * * * *
2938630 CATTCATTTCCCGATTAGGCACTGA-AAACACATTATCTTCGTTAAGATAAATGATATTGATGAT
128 CATTCATTTTATGATTAGGCACT-ATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGAT
* * * * * * *
2938694 TTTCTTTTGCATAAAAATCTTTTTTTTGCCCTATTTTCCTTAAAATCAAAATTCATC-CCTTA-A
192 TTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCTCC-TAGA
* * * * * * * *
2938757 ATATGACAAGCATCGATTCTTGTAACAATCTCTATTCTTTTCAAGATTGGGAACTAAGAACACAA
256 AAAAGACAAGCATCGATTCTCGTGACAGTCTCTACTCTTTTCAAGATTGGGAACCAAGAACACAT
* * * *
2938822 TCCCTTCATTAGGAAACATGACATT-ATTGCTTTGGTGTCGCGATAAAGGCTTTTCTTTCGACTG
321 TCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTG-CGCAATAAAGGCTTTTCTTTCAACCG
* * * *
2938886 CTTTTGATAGAATCAAAGTTCATCTTTTAAATAAGACAAACATGTATAGTCATACTAATCCCTAT
384 TTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC-AT
** * *
2938951 TCTTTTCAGGATTTCGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG
448 TCTTTTCAGGATTAGGCACAATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG
* * * * *
2939016 TTTTGCAAGAAAGGCTTTCTTCCTACTAGTTTTTGAAAAGTCTATGTTCATGCCTCAAAAGAGAC
513 TTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGAC
* * ** * * * * *
2939081 AAACATGGATTCTAGAAAAAATCATCAATCATTTCGTGATTAGGCACTATAAACACAGTCTCCTA
578 AAACTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTC
* * *
2939146 ATTAGGATAAACGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTACCCAATTTTCCTT
643 ATTAGGATAAAGGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * *
2939211 AAAGTCAAAGTTCATTTCTTAAAAAAAACAAGCAAT-GATTCTCGTGATAGACTCCACTCTTTTC
708 AAAATTAAAGTTCATTCCTTAAAAAAGACAAGC-ATCGATTCTCGTGACAGTCTCCACTCTTTTC
* * * * **
2939275 AAGCTTGGGAACCAAGAAAACATTCCCTTC-AGGATACATCACATTGATACTTTGG-GTTGCAAT
772 AAGATTGGGAACCAAGAACACATTCCCTTCTAGGATACATGACATTGATGCTTTGGTGCCGCAAT
* * *
2939338 AAAGGCTTTTCTTT-CATCCATTTTTGACAGAATCAAAGTTTGTATCTCAAATAAGACAAACGTG
837 AAAGGCTTTTCTTTCCA-CCATTTTTGATAGAATCAAAGTTTATATCTCAAATAAGACAAACATG
* * * * *
2939402 AATAGTCATACTAATCCCCATGCTTTTCAAGAATGGGCACCATAAATAT
901 AATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * *
2939451 AGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGGTTTCTCCCCCTCC
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCT-TCCCTCC
* * *
2939516 AATTTTTGAAAAGTCTAAGTTCGTGCCTCGAACGAGACAAACATGGATTCTAGTAATGATCTTCA
65 AATTTTTGAAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* ** * * *
2939581 TTCATTTTTTGATTAGGCTGTATAAACACATTCTCCTAATTTGGATAAATGATATTGATGATTTT
130 TTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTT
* * * * * *
2939646 CTCTACCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTAAAAAAA
195 CTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCTCCTAGAAAAA
* * *
2939711 GACAAGCATTGATTCTCATGACAATCTCTACTCTTTTCAAGATTGGGAACCAAGAACACATTCCC
260 GACAAGCATCGATTCTCGTGACAGTCTCTACTCTTTTCAAGATTGGGAACCAAGAACACATTCCC
* ** * *
2939776 TTCATTAGGATCCATGATGTTGATGCTCTGGTGTCGCAATAAAGGCTTTTCTTTCAACCATTTTT
325 TTCATTAGGATACATGACATTGATGCTTTGGTG-CGCAATAAAGGCTTTTCTTTCAACCGTTTTT
* * * *
2939841 GATAGAATCAAAGTTTGTCTCCTAAATAAGACAAATATGAATAGTCAAACTAATCCCAATTCTTT
389 GATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC-ATTCTTT
* * * * * *
2939906 TCGGGATAACGCACAATAAACATAGTCTTCTCATAAGGATACATGATATTGATCCTCTGGTTTCG
453 TCAGGATTAGGCACAATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCG
* * * *
2939971 CAAGAAAAGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTTAAATGAGATAAACT
518 CAAGAAAGGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACT
* * * *
2940036 TGGATTCTCGTAATAATCTTCATTCATTTTGTGATTAGGTACTATAAACACATTCTTCTCATTAG
583 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAG
* * *
2940101 GATAAATGATATTGATGATTTTCTCTAGCATAGAAATCTTTTCTTTGCCTTATTTTCCTTAAAAT
648 GATAAAGGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * ** * * * * * * *
2940166 CAAAATTCA-TCCTTTAACTATGACAAGCATCAATTCTCCTAACGGTCTCCATTCTTTTCTAGAT
713 TAAAGTTCATTCC-TTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGAT
* * *
2940230 TAGGAACCAAGAACACATTCCCTTCATTAGGATA-ATGACATTGATGCTTTGGTGTCGTAATAAA
777 TGGGAACCAAGAACACATTCCCTTC--TAGGATACATGACATTGATGCTTTGGTGCCGCAAT-AA
** * * *
2940294 AGTTTTTTTTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTCAAATAAGACAAACATGAAT
839 AGGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATATCTCAAATAAGACAAACATGAAT
* * *
2940359 AGTCATACTAATCCCTATTCTATTCAAGATTAGGCACCATAAACAT
904 AGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
* * * * * * * ** *
2940405 AGTCTTCTTATAATGATACACGGTATTAATGTTTTGGTTTCACAA-AAATGGCTTTCTTTGCACC
1 AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAA-GGCTTTCTTCCCTCC
2940469 AATTTTTGAAAAGTCTAAGTTCGT-ATCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
65 AATTTTTGAAAAGTCTAAGTTCGTGA-CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC
* * * * * * * *
2940533 ATTCATTTTGTGATTAGGCACTATAAACACGTTCTGCTCTTTAGGATAAATGATATTAAAGACTT
129 ATTCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTT
* * * * * *
2940598 TCTGTAGCATGAAAATCTTTTCGTTGCCCTATTTTCCTTAAAATCAAAGTTCACCCCCT---AAA
194 TCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCTCCTAGAAAA
* * * * * *
2940660 AGACAAGCATCAATTTTCGTGATAGT-TTTCGCTTTTTTCAAGATTGGGAACCAAGAACACATTC
259 AGACAAGCATCGATTCTCGTGACAGTCTCT-ACTCTTTTCAAGATTGGGAACCAAGAACACATTC
* * * * * * * * *
2940724 TCTTCCTTAGGATATAAGACATTAATGCTTTGGTCTCGTAAACAAAAGCTTTTCTTTCAACCGTT
323 CCTTCATTAGGATACATGACATTGATGCTTTGGT-GCG-CAATAAAGGCTTTTCTTTCAACCGTT
* * * *
2940789 TTTGATAGAATCAAAGTTTGTCTCCTAAATAAGACAAACATGAATTGTCACACTAATCCCAATTC
386 TTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCC-ATTC
* * * * * *
2940854 TTTTCGGGGTAAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATCCTTTGGTT
450 TTTTCAGGATTAGGCACAATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTT
* **
2940919 TCGCAAGAAAGGCTTTCTTCCCACTAATCTTTGTGAAGTCTAAGTTCATGCCTCAAATGAGACAA
515 TCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAA
* *
2940984 ACTTGGATTCTAGTAATGATCTTTATTCATTTTGTGATTAGG-TCTATAAACACATTCTCCTCAT
580 ACTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCAT
* *
2941048 TAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTT-ACCTATTTTCCTTAA
645 TAGGATAAAGGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
2941112 AATTAAAGTTCA--CCTTTTAAAAAAAGACAAGCATCGATTCTCGTGAC
710 AATTAAAGTTCATTCC--TT-AAAAAAGACAAGCATCGATTCTCGTGAC
2941159 GTTGATACTT
Statistics
Matches: 4664, Mismatches: 733, Indels: 202
0.83 0.13 0.04
Matches are distributed among these distances:
938 14 0.00
939 241 0.05
940 51 0.01
943 1 0.00
945 3 0.00
946 71 0.02
947 269 0.06
948 559 0.12
949 686 0.15
950 1352 0.29
951 608 0.13
952 477 0.10
953 188 0.04
954 142 0.03
955 2 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (949 bp):
AGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCTCCA
ATTTTTGAAAAGTCTAAGTTCGTGACTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
TCATTTTATGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTTC
TCTAGCATGAAAATCTTTTCTTTGCCCTATTTTGCTTAAAATTAAAGTTCATCTCCTAGAAAAAG
ACAAGCATCGATTCTCGTGACAGTCTCTACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
TCATTAGGATACATGACATTGATGCTTTGGTGCGCAATAAAGGCTTTTCTTTCAACCGTTTTTGA
TAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCATTCTTTTCA
GGATTAGGCACAATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGCAA
GAAAGGCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACTTGG
ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
AAAGGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATTAA
AGTTCATTCCTTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGG
AACCAAGAACACATTCCCTTCTAGGATACATGACATTGATGCTTTGGTGCCGCAATAAAGGCTTT
TCTTTCCACCATTTTTGATAGAATCAAAGTTTATATCTCAAATAAGACAAACATGAATAGTCATA
CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACAT
Found at i:2941373 original size:21 final size:21
Alignment explanation
Indices: 2941347--2941423 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
2941337 AAATTATCCA
2941347 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
2941368 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
* *
2941389 AATGTATCGATACA-TTCTACA
1 AATGTATCGATACATTTGTA-G
2941410 AATGTATCGATACA
1 AATGTATCGATACA
2941424 GGGTCCCAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 3 0.06
21 48 0.94
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:2941483 original size:19 final size:19
Alignment explanation
Indices: 2941459--2941526 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
2941449 AATTCAACAA
2941459 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
2941478 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
2941493 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
2941510 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
2941527 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:2941498 original size:13 final size:13
Alignment explanation
Indices: 2941480--2941504 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2941470 ACATAAGTTT
2941480 TGTATCGATACAA
1 TGTATCGATACAA
2941493 TGTATCGATACA
1 TGTATCGATACA
2941505 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2941502 original size:32 final size:32
Alignment explanation
Indices: 2941461--2941523 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
2941451 TTCAACAATT
*
2941461 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
2941493 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
2941524 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:2941584 original size:13 final size:13
Alignment explanation
Indices: 2941566--2941591 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2941556 CATTTTTCTG
2941566 TGTATCGATACAT
1 TGTATCGATACAT
2941579 TGTATCGATACAT
1 TGTATCGATACAT
2941592 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2941588 original size:33 final size:33
Alignment explanation
Indices: 2941546--2941612 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2941536 GCCAAGGAAA
***
2941546 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
2941579 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
2941612 T
1 T
2941613 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:2944077 original size:52 final size:53
Alignment explanation
Indices: 2943959--2944078 Score: 142
Period size: 51 Copynumber: 2.3 Consensus size: 53
2943949 ATTCTCCACA
* * * *
2943959 ATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTA--ATTTTCTTTA-
1 ATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACTATCAATTT-TTCAC
2944010 ATCGGGGATACTCCAACTCCGATTTTATTTCCAAAA-A-TATCAATTTTTCAC
1 ATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACTATCAATTTTTCAC
*
2944061 AGTCGAGGATACTCCAAC
1 A-TCGGGGATACTCCAAC
2944079 CTCGTTATTT
Statistics
Matches: 60, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
49 2 0.03
50 4 0.07
51 39 0.65
52 15 0.25
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.35
Consensus pattern (53 bp):
ATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACTATCAATTTTTCAC
Found at i:2944099 original size:28 final size:28
Alignment explanation
Indices: 2944067--2944138 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
2944057 TCACAGTCGA
* * **
2944067 GGATACTCCAACCTCGTTATTTCATCGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
*
2944095 GGATACTCCAACCCCGTTACTTCCGAGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
2944123 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
2944139 GCTTTATTCC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.24
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTTCAGAGG
Found at i:2944204 original size:107 final size:107
Alignment explanation
Indices: 2944013--2944217 Score: 252
Period size: 107 Copynumber: 1.9 Consensus size: 107
2944003 TTCTTTAATC
* * * *
2944013 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATATCAATTTTTCACAGTCGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATATCAATTTCTCACAATCGAGGATACTCCAA
*
2944078 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
66 CCCCGTTATTTCA-CGGGGATACTCCAACCCCGTTACTTCCGA
* * ** * * *
2944121 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATATCAATTTCTCACAATCGAGGATACTCCAA
*
2944185 CCCCGTTATTTTCGA-GGGGATACTCCAATCCCG
66 CCCCGTTA-TTTC-ACGGGGATACTCCAACCCCG
2944218 ATTTTTTTTT
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
107 56 0.68
108 25 0.30
109 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.30
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATATCAATTTCTCACAATCGAGGATACTCCAA
CCCCGTTATTTCACGGGGATACTCCAACCCCGTTACTTCCGA
Found at i:2944272 original size:80 final size:79
Alignment explanation
Indices: 2944092--2944297 Score: 225
Period size: 80 Copynumber: 2.6 Consensus size: 79
2944082 GTTATTTCAT
* *
2944092 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
* * *
2944157 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * ** * ** *
2944171 TGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTTTC-TAATC
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG-GCTTTATTCCCAAAAT-
2944235 ATCGATTTCTCACAAC
64 ATCGATTTCTCACAAC
* * * * *
2944251 CGGGGATACTCCAGCCTCGTTATTTTCAAGGGAACACTCCAACCCCG
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
2944298 TTATTATCTC
Statistics
Matches: 105, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
79 46 0.44
80 59 0.56
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.30
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:2946685 original size:394 final size:397
Alignment explanation
Indices: 2945900--2947116 Score: 1166
Period size: 423 Copynumber: 3.0 Consensus size: 397
2945890 GATTCCCTTT
* * * * * *
2945900 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAGGCTTTTATTTCAACCATTTTTCAT
1 ATTAAGATAAATGACATTAATGCTTTAGTGCCGCAATAAAAGCTTTTATTTCAACCATTTTTCAT
* *
2945965 AAAATCAAAGTTTGTCTCTCAAATAAGATAAACATGAGTAGTCATACCAATCCCCATTCATTTCA
66 AAAATCAAAGTTTGTCTCTCAAATAAGATAAACATAAATAGTCATACCAATCCCCATTCATTTCA
* * ** *
2946030 GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATCGATGCTTTGGTTTTGCAA
131 GGATTAGACACCATAAACATAGTCTTCTCATAAGAATACACGATATCGACACTTGGGTTTTGCAA
**
2946095 GAAAAGCTTTCTCCCCCCCCCAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
196 GAAAAGCTTTCTCCCCCAACCAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* *
2946160 GGATTCTAGTGATGATCTTCATTCATTTTTTGATTAGACACTATAAACACATTCTCCAAATTAGG
261 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTCTCCAAATTAGG
* * * * *
2946225 ATAAATAATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTCTTTTCCTTAAAATC
326 ATAAATAATACTGATAATTTTCTCTAGCAGGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATC
2946290 AAAGTTC
391 AAAGTTC
* * *
2946297 ATTAAGATAAATGACATTAATGCTTTAGTGCCGCACTAAAAGCTTTTCTTTCAA-CATTTTTGAT
1 ATTAAGATAAATGACATTAATGCTTTAGTGCCGCAATAAAAGCTTTTATTTCAACCATTTTTCAT
* * * *
2946361 AGAATCAAAGTTTGTCTCTCAAATAAGATAAACATAAATAGTCATACTAATCCCCATTCTTTTTA
66 AAAATCAAAGTTTGTCTCTCAAATAAGATAAACATAAATAGTCATACCAATCCCCATTCATTTCA
* * *
2946426 GGATTAGACACTATAAACATAGTCTTCTCATAAGAATATACGATATTGACACTTGGGTTTTGCAA
131 GGATTAGACACCATAAACATAGTCTTCTCATAAGAATACACGATATCGACACTTGGGTTTTGCAA
** ** * *
2946491 G-AAAGCCTTT-T-TTCCAACCAATTTTTGAAAAGTCTAAGTTTGTGCCTCGACTGAGACAAACA
196 GAAAAG-CTTTCTCCCCCAACCAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACA
* * * **
2946553 TGGATTCTAGTAATGATTTTCACTT-ATTTTGTGATTAGGCATTATAAACACATTCTCCATTTTA
260 TGGATTCTAGTAATGATCTTCA-TTCATTTTGTGATTAGACACTATAAACACATTCTCCAAATTA
* *
2946617 GGATAAATGATACTGATAATTTTCTCTA-CTAGGAAAATATTTTCTTTGCCCTATTTTTCTTAAA
324 GGATAAATAATACTGATAATTTTCTCTAGC-AGGAAAATATTTTCTTTGCCCTATTTTCCTTAAA
2946681 ATCAAAGTTC
388 ATCAAAGTTC
* * * * *
2946691 ACCCTTAAAGAAAGACAAGCATCGATTCTTATGACATCTCTACTTTTTTCAAGACTAGGAACCAA
1 A---TT-AAGATA-A-ATG-A-C-A-T-TAATG-C-T-T-TA-----GT---G-C--CG---CAA
* * * * * * * * *
2946756 GAAAGGCTTTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTATCAAATAAGACAATCATG
37 TAAAAGCTTTTATTTCAACCATTTTTCATAAAATCAAAGTTTGTCTCTCAAATAAGATAAACATA
* * * * *
2946821 AATAGTGATGCTAAT-CCCATTC-TTTCCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
102 AATAGTCATACCAATCCCCATTCATTT-CAGGATTAGACACCATAAACATAGTCTTCTCATAAGA
** * ** * * *
2946884 ATACACGATATTAACGA-TTAGGTTTCACAAGAAAGGCTTTCT-TCCC-TCCAATTTTTGAAAAG
166 ATACACGATATCGAC-ACTTGGGTTTTGCAAGAAAAGCTTTCTCCCCCAACCAATTTTTGAAAAG
* * * * * * * * *
2946946 TCTAGGTTCGTGCCTTAAATGAGATAAACTTGGATTGTAGTAACGAACTTCTTTCATTTTGTGAT
230 TCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* ** * ** * *
2947011 TAGGCACTACCAACACATTTTCCCTCATTAGGATAAACAATATTGATGAA-TTTCTCTAGCATGG
295 TAGACACTATAAACACATTCT-CCAAATTAGGATAAATAATACTGAT-AATTTTCTCTAGCA-GG
* * *
2947075 -AAATCA-TTTCATTGCTCTATTTTGCTTAAAATCAAAGTTC
357 AAAAT-ATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
2947115 AT
1 AT
2947117 CCCTTGAAAA
Statistics
Matches: 680, Mismatches: 97, Indels: 62
0.81 0.12 0.07
Matches are distributed among these distances:
393 1 0.00
394 163 0.24
395 7 0.01
396 130 0.19
397 48 0.07
398 5 0.01
399 1 0.00
400 2 0.00
401 1 0.00
402 1 0.00
403 1 0.00
404 1 0.00
405 4 0.01
406 1 0.00
407 1 0.00
408 1 0.00
409 2 0.00
414 1 0.00
417 1 0.00
418 1 0.00
420 1 0.00
421 1 0.00
422 5 0.01
423 167 0.25
424 127 0.19
425 6 0.01
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.35
Consensus pattern (397 bp):
ATTAAGATAAATGACATTAATGCTTTAGTGCCGCAATAAAAGCTTTTATTTCAACCATTTTTCAT
AAAATCAAAGTTTGTCTCTCAAATAAGATAAACATAAATAGTCATACCAATCCCCATTCATTTCA
GGATTAGACACCATAAACATAGTCTTCTCATAAGAATACACGATATCGACACTTGGGTTTTGCAA
GAAAAGCTTTCTCCCCCAACCAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTCTCCAAATTAGG
ATAAATAATACTGATAATTTTCTCTAGCAGGAAAATATTTTCTTTGCCCTATTTTCCTTAAAATC
AAAGTTC
Found at i:2947478 original size:159 final size:156
Alignment explanation
Indices: 2947315--2947978 Score: 412
Period size: 159 Copynumber: 4.2 Consensus size: 156
2947305 TACTAATCCC
*
2947315 CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCGTAAGGATATATGACATTGACGCTT
1 CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGACATTGACGCTT
*
2947380 TGGTTTCACAAGAAAGGC-TTTCTTCCCCCTAATTTTTTCAAAAGTCTAAGTTCGTGCCTCAAAT
66 TGGTTTCACAAGAAAGGCTTTTCTTCCCCCT-ATTTTTT-AAAA-TCAAAGTTCGTGCCTCAAAT
*
2947444 GAGACAAACATTGATTCTAGTAATGATCTT
128 AAGACAAACATTGATTCTAGTAAT-ATCTT
* *** * * * * * * *
2947474 CATTCATTTT-GTGATTAGGCATTGTAAACCCAT-TTC-CCTCATTAGGATAAAAGATATTGATG
1 CATTCTTTTTAG-GATTAGGCACCATAAA--CATAGTCTTCTCATAAGGATATATGACATTGACG
* * * * * * *
2947536 ATTT--TCTCTAGCATGGAAA-TCTTTTCTAT-GCCCTATTTTCCTTAAAATCAAAGTTCATCCC
63 CTTTGGTTTC-A-CA-AGAAAGGCTTTTCT-TCCCCCTATTTT--TTAAAATCAAAGTTCGTGCC
* * * * * * * *
2947597 TTAAAAAAGATAAGCATCGATTCTCGTGATAGTCTC
122 TCAAATAAGACAAACATTGATTCTAGTAATA-TCTT
* * ** * * * *
2947633 CACTCTTTTGAAAATTAGG-ACCCA-AGAACACA-T-TTCCTTCATTAGGATACATGACATTGAT
1 CATTCTTTTTAGGATTAGGCA-CCATA-AACATAGTCTT-C-TCATAAGGATATATGACATTGAC
* * * * * * * *
2947694 GCTTTGGTGTCGCAACAAAGGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTT--TGTCTTA
62 GCTTTGGTTTCACAAGAAAGGCTTTTCTTCCCCCTATTTTT--TAAAATCAAAGTTCGTGCCTCA
* *
2947757 AATAAGACAAACATTAACTGT-TAGACTAAT-TCCT
125 AATAAGACAAACATTGA-T-TCTAG--TAATATCTT
*
2947791 -ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATA-GA-ATTTTGACGG
1 CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGACA--TTGACGC
* * * * *
2947853 TTTGGTTTCGCAAGAAAGGCATTTCTTCCCCCCAATTTTTGAAAAGTCAAAGTTCGTGTCTCAAA
64 TTTGGTTTCACAAGAAAGGCTTTTCTT-CCCCCTATTTTTTAAAA-TCAAAGTTCGTGCCTCAAA
*
2947918 TAAGACAAACATGGATTCTAGTAATGATCTT
127 TAAGACAAACATTGATTCTAGTAAT-ATCTT
* ** *
2947949 CATTCATTTTCCGATTAGGCACAATAAACA
1 CATTCTTTTTAGGATTAGGCACCATAAACA
2947979 CATTCCCCTC
Statistics
Matches: 376, Mismatches: 87, Indels: 84
0.69 0.16 0.15
Matches are distributed among these distances:
155 1 0.00
156 9 0.02
157 95 0.25
158 35 0.09
159 205 0.55
160 22 0.06
161 9 0.02
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (156 bp):
CATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGACATTGACGCTT
TGGTTTCACAAGAAAGGCTTTTCTTCCCCCTATTTTTTAAAATCAAAGTTCGTGCCTCAAATAAG
ACAAACATTGATTCTAGTAATATCTT
Found at i:2948007 original size:475 final size:475
Alignment explanation
Indices: 2946757--2952659 Score: 6791
Period size: 475 Copynumber: 12.4 Consensus size: 475
2946747 AGGAACCAAG
* * * *
2946757 AAAGGCTTTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGT-CTATCAAATAAGACAATCATG
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCCT-T-AAATAAGACAAACATG
* * *
2946821 AATAGTGATGCTAAT-CCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
64 AATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * * *
2946885 TACACGATATTAACGATTAGGTTTCACAAGAAAGGCTTTCTTCCCTCCAATTTTTGAAAAGTCTA
129 TATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTA
* * * * * * * *
2946950 GGTTCGTGCCTTAAATGAGATAAACTTGGATTGTAGTAACGAACTTCTTTCATTTTGTGATTAGG
194 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
** * *
2947015 CACTACCAACACATTTTCCCTCATTAGGATAAACA-ATATTGATGAATTTCTCTAGCATGGAAAT
259 CACTATAAACACA-TTCCCCTCATTAGGATAAA-AGATATTGATGATTTTCTCTAGCATGGAAAT
* * * * * *
2947079 CATTTCATTGCTCTATTTTGCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGTATAGATTCT
322 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCT
* * * * * *
2947144 CGTGACAGTCTCAACACTTTTCAAGATTTGGAACCAAGAACACATTCTCTTCCTTAGGATACAAG
387 CGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATG
* *
2947209 ACATTGATGCTTTGGGGTCGCAGT
452 ACATTGATGCTTTGGTGTCGCAAT
* * *
2947233 AAAAGCTTTTCTTTCCACCGTTTTTGATGGAATCAAAGTTTGTCACTCAAATAAGACAAACATGA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC-CTTAAATAAGACAAACATGA
* *
2947298 ATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCGTAAGGAT
65 ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* * * * *
2947363 ATATGACATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCCCTAATTTTTTCAAAAGTCTA
130 ATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAA-TTTTTGAAAAGTCTA
*
2947428 AGTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
194 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * * *
2947493 CATTGTAAACCCATTTCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATCT
259 CACTATAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATCT
* * *
2947558 TTTCTATGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCATCGATTCTCG
324 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCG
* * * * * *
2947623 TGATAGTCTCCACTCTTTTGAAAATTAGGACCCAAGAACACATTTCCTTCATTAGGATACATGAC
389 TGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGAC
*
2947688 ATTGATGCTTTGGTGTCGCAAC
454 ATTGATGCTTTGGTGTCGCAAT
** *
2947710 AAAGGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGT-CTTAAATAAGACAAACATTAA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCCTTAAATAAGACAAACATGAA
* * * * *
2947774 CT-GTTAGACTAATTCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
66 -TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* * *
2947838 ATA-GAATTTTGACGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCCCCAATTTTTGAAAAGTCA
130 ATACG-ATATTGACGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCCCCCCAATTTTTGAAAAGTCT
* * **
2947902 AAGTTCGTGTCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCCGATTAG
193 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * *
2947967 GCACAATAAACACATTCCCCTCATTAGGATAAATGATATTGATGATATTCTCTAGCATGGAAATC
258 GCACTATAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATC
* *
2948032 TTGTT-TTAGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCT
323 TT-TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCT
** * * * *
2948096 AATGACAGTCTCCAAC-CCTTTCAAGATTTGGAACCAAGAACACATTCCCTTCATTAAGATACAA
387 CGTGACAGTCTCC-ACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAT
* * **
2948160 GGCATTGATAATGCTTTAGTGTCATAAT
451 GACATTG---ATGCTTTGGTGTCGCAAT
* * * * * *
2948188 AAAGGCCTTCCTTTCAACCGTTATTGATAGAATCAAAGTTTGTCCCTCAAATAAGACAAACATTA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT-CCTTAAATAAGACAAACATGA
* * *
2948253 ATAGTCATACTATTCCCCATT-TATTTCAGGATTAGGCACCATAAATATAGTCTTCTCACAAGGA
65 ATAGTCATACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * * *
2948317 TACACGATATTGACGCTTCGGTTTCACAAGAAAGGCTTTCTTCCCTCGAATTTTTGAAAAGCCTA
129 TATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTA
* * * * * *
2948382 AGTTCATTCCTCGAATGAGACAAACTTGGATTCTAGTAATCATCTTCATTCATTTTGGGATTAGG
194 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * * * * *
2948447 CACTATAAACACAATCTCCTTAATAGGATAAAAGATGTTGATGATTTT-TCTAGCATGGAAATCG
259 CACTATAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATCT
* *
2948511 TTTCTTTGCCTTATTTTGCTTAAAATCAAAGTTCATCCCTTGAAAAA-AGCAAG--TGCTGATTC
324 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGA-CAAGCAT-C-GATTC
* * * * * *
2948573 TCATGATAGTCCCCTCTCTTTTCAAGAATGGGAACCAAGAACACATTCCCTTCCTTAGGATACAT
386 TCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAT
* * *
2948638 GACATTGATGCTCTAGTGTCACAAT
451 GACATTGATGCTTTGGTGTCGCAAT
* * * * * * *
2948663 AAAAGCTTTTTTTTCCATCATTTTCGATAGAATCAAAGTTTTTCACTTAAATAAGACAAACAAGA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC-CTTAAATAAGACAAACATGA
* * * * * *
2948728 AAAGTAATACTAATCCCCATTCTTTTCAAGATTAGGCACCATTAACATAGTCTTCTTATAAAGAT
65 ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* ***
2948793 ATA-GATATTGACGCTTTGATTTCGCAAGAAAGGCTTTCTTCCCCCTGTTTTTTGAAAAGTCTAA
130 ATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAA
* *
2948857 GTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGC
195 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * * * * *
2948922 ACTGTAAACACATTACCCTCATTAGGATAAATGATACTAATGATTTTCTCTATCATGGAAATCTT
260 ACTATAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATCTT
* * * * *
2948987 TTCTTT-CCTCTATTTTTCC-TAAAATCAAAGTTTATCTCTTGAAAAAGACAAACAACGATTCCC
325 TTCTTTGCC-CTA-TTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTC
* * * * *
2949050 GTGACAGTCGCCACTCTTTTCAAGATTGGGAACCAAGAACATATTCCCTTCACTAAGATGCATGA
388 GTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGA
* *
2949115 CGTTGATACTTTGGTG-CTGCAAT
453 CATTGATGCTTTGGTGTC-GCAAT
* * * * * *
2949138 AAAAGCTTTTCTTTCCACCATTTTTGTTAGAATCAATGTCTGTCACTTAAAAAAGACAAACATGA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC-CTTAAATAAGACAAACATGA
* * * *
2949203 ATAGTTAAACTAAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAAGA
65 ATAGTCATACT-AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * ** * *
2949268 TATACGGTATTGATGATTTGGTATCGCAAGAAAGGCTTTCTTCCCCTGAATTTTTCACAAGTCTA
129 TATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTA
* * * * * * * *
2949333 AGTTCATGCCTCAAACGAGATAAAAAAGGATTCTAGTAGTGATCTTAATTC-TTTTCGTGATTTG
194 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT-GTGATTAG
* * * * *
2949397 GCATTGTAAACACATTCCCCTCGTTAGGATAAAGGATATTGATGATTTTCTCTAGCATGAAAATC
258 GCACTATAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATC
*** * * * *
2949462 TTTTCTACACCCTATTTTCCTTAAAATCAAAGCTAATCCCTTTAAAAAGACAAGCATTGATTCTC
323 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTC
* *
2949527 GTGACAGTCTCCACTCTTTTCAAGGTTGGGAACCAAGAACACATTCCCTTCATGAGGATACATGA
388 GTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGA
**
2949592 CATTGATGCTTTGGTGTCATAAT
453 CATTGATGCTTTGGTGTCGCAAT
* * *
2949615 AAAGGCTTTTCTTTCTACCGTTATTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC-CTTAAATAAGACAAACATGA
* * *
2949680 ATAGTCATGCTAAACCCCATT-TATTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGA
65 ATAGTCATACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * ** * * *
2949744 TACACAATATTGATGCTTTGGTTTCATAAGAAA-GCTTTCTTCACACCAATATTTGAAAAGTCTA
129 TATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTA
* * ** * *
2949808 AGTTCGTTCCTCAAATGAGACAAACTTGGATT-TAAGTAAAAATCTTCATTTATTTTGTGATTGG
194 AGTTCGTGCCTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAG
* *
2949872 GCACTATAAACACAATCTCCCT-ATTAGGATAAAAGATATTGATGATTTTCTCTAGCATAGAAAT
258 GCACTATAAACACATTC-CCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAAT
* ** * *
2949936 CGTTTCTTTGCCCTATTTTGATTAAAATCAAAGCTCATCCCTTGAAAAAGACAAGCGTCGATTC-
322 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCT
* ** * * * *
2950000 CTGTGACAGTTTCCTTTCTTTTCAAGATTGGGAACTAAGAGCACATTCCCTTCCTTAGAATACAT
387 C-GTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAT
2950065 GACATTGATGCTTTGGTGTCGCAAT
451 GACATTGATGCTTTGGTGTCGCAAT
* * * *
2950090 AAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCCCCTAAATAAGACAAAGATGA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT-CCTTAAATAAGACAAACATGA
* * * * * * *
2950155 ATAATTATACAAATCCCCATTCTTTTTAGGATTAGGCACCGTTAACATAATCTTCTCATAAGGAT
65 ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* * * *
2950220 ATA-GATATTGACGCTTTGATTTCGCAAGAAAGGCTTTCTTCCCCCTATTTTTTGAAAAGTCAAA
130 ATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAA
* * * **
2950284 TTTCGTACCTCAAATGAGACAAACATGGAATCTAGTAATGATCTTCATTCATTTCATGATTAGGC
195 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * * * * *
2950349 ACTCA-AAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTCAATCATGGAAAACT
260 ACT-ATAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATCT
* *
2950413 TTTGC-TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATTGATTCTC
324 TTT-CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTC
* * *
2950477 GTGACAGTCTCCGCTCTTTTCATGATTGGGAACCAAGAACACGTTCCCCTT-ATTAGGATACATG
388 GTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATT-CCCTTCATTAGGATACATG
**
2950541 ACATTGATGCTTTGGTGTCATAAT
452 ACATTGATGCTTTGGTGTCGCAAT
* * * * * *
2950565 AAAGGCTTGTCCTTCAACTGTTTTTGATATAATCAAAGTTTGTCTCTCAAATAAGACAAACATGA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC-CTTAAATAAGACAAACATGA
* * * * * *
2950630 ATAGTCATATTAATCCCCAATCCTTTCAGGATTAGGGACCATTAATATAGTCTTCTCATAAGGAT
65 ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* * * * *
2950695 ACACGATATTAATGCTTTGGTTTCACAAGAAAGGCTTTCTTTCCCCCAATTTTTGAAAAGTCTAA
130 ATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAA
* * * * * * * *
2950760 GTTCTTGCCTCAAATGAGGCAAACGTGAAATCTAGTAATGATCTTCACTCAATTCGTGATTAGGC
195 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * * *
2950825 AC-AGTAAACACATTCCCCTCACTAAGATAAATGATATTGATCATTTTCTCTAGCATGGAAATCT
260 ACTA-TAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATCT
*
2950889 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCA
324 TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCG
* * * * * *
2950954 TGACAGTCTTCAATCTTTTCAAGATTTGGAACCAAGAACCCAATCCCTTCATTAGGATACAAGAC
389 TGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGAC
* *
2951019 ATTGATGCATTGGTGTTGCAAT
454 ATTGATGCTTTGGTGTCGCAAT
* * * * * * *
2951041 AAAGTCTTTCCTTTCAACCGTTATTGATAGAATCAAAGTTTGTCTCTCAAATAAGGCAAACATTA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC-CTTAAATAAGACAAACATGA
* ** * * *
2951106 ATAGTCATACTAGTCCGTAATTATTTT-AAGATTAGGCACCATAAACATAGTCTTCTCATAGGGA
65 ATAGTCATACTAATCC-CCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * * *
2951170 TACACGATATTGATGTTTTGGTTTCACAAGAAAGGCTTTCTTCTCACCAATTTTTGAAAAGTCTA
129 TATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTA
* * ** *
2951235 AGTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTAAACATCTTCATTCATTTTGGGATTAGG
194 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * * * *
2951300 CACTATAAACACAATCTCCTCATTAGGATAAAAGATATTGATAATTTTTTCTAGCA-CGAAAGTC
259 CACTATAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAA-TC
* * * *
2951364 GTTTCTTTGCCCTATTTTGCGTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCACCGATTCTC
323 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTC
* ** * * *
2951429 ATGATTGTCTTCC-CTCTTTTCAAGATTGGGAGCCAAGAACACATTCCCTTCCTTATGATACATG
388 GTGACAGTC-TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATG
* *
2951493 ACATTGATG-TTTGCTGCCGCAAT
452 ACATTGATGCTTTGGTGTCGCAAT
* * * * * * * *
2951516 AAAGGCTTTTCTTTCAATCGTTATTAATAGAATCAAAGTTTGTATCTCAAATAAAACAAACATTA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT-CCTTAAATAAGACAAACATGA
* * * * *
2951581 CTAGTCATACTAGTCCCCATT-TATTACAAGATTATGCACCATAAACATAGTCTTCTCATAAGGA
65 ATAGTCATACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * * * * *
2951645 TAGACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTCTT-CCACCGATTTTTAAAAATTCCA
129 TATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTA
* * * ** *
2951709 AGTTCGTTCCTCAAATGAGACAAGCTTGGATTCTAGTAAACATCTTCCTTCATTTTAG-GATTAG
194 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT-GTGATTAG
* * * * *
2951773 GCACAATAAACACAATCTCCTCATTATGATAAAAGATATTGATGATTTTCTCTGGCATGGAAATC
258 GCACTATAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATC
* * * * * *
2951838 GTTTCTTTGCCCTAGTTTGCTTAAAATCAAAGTTCATCCCTTGGAAAATG-TAAGCGTCGATTCT
323 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT-GAAAAAGACAAGCATCGATTCT
* * * * * * * * * *
2951902 CATAATAGTCTTCTCTCTTTTCAAGATTGGGAACCAAGAATACATTTCCTCCCTTAAGATACATG
387 CGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATG
* * *
2951967 ACATTGATGGTTCGGTGTCCCAAT
452 ACATTGATGCTTTGGTGTCGCAAT
* * * * * **
2951991 AAAAGCTTTTCTTTCCATCGTTTTTTACAGAATCAAAGTTTATCACTTAAATAAGATTAACATGA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC-CTTAAATAAGACAAACATGA
* * * * **
2952056 AAAGTCA-AGCTAATCCCTAGTCTTTTCAGGATTAGGCACCATTAATGTAGTCTTCTCATAAGGA
65 ATAGTCATA-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * *** *
2952120 TATA-GATATGGATGTTTTGGTTTTGCAAGAAAGGCTTTCTTCCCTATATTTTTTGAAAAGTCTA
129 TATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTA
* * * * * *
2952184 AATTTGTACCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCCTTCATTTCGTGATTAGG
194 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* * * * *
2952249 CA-TGGTAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTCTAGCGTGGAAATC
259 CACT-ATAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATC
* * * *
2952313 TTTTCTTT-CCCATATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGGCGAGCATTGATTTT
323 TTTTCTTTGCCC-TATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCT
* * * * * * * *
2952377 CGGGATAGTTTCCACTCTTTTCAGGATTGGGAACTAAGAACATATTCCCTTCACTAAGATACATG
387 CGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATG
* *
2952442 ACATT-ATTGCTTTGGTCTTGCAAT
452 ACATTGA-TGCTTTGGTGTCGCAAT
* * * * * *
2952466 AAAAGC-TTTCTTTCCACCATTTTTGCTAGAATCAATGTTTTTTACTTAAATAAGACAAACATGA
1 AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG-TTTGTCCTTAAATAAGACAAACATGA
* * ** *
2952530 ATAGTCAAACTAAATCCCCATTCTTTCCAGGATTAGGTGCCATAAACATAGTCTTCTCATAAAGA
65 ATAGTCATACT-AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * * *
2952595 TATATGATATTGACGTTTTGGTATCGCAAGAAAGGCTTT-TTTCCTCCAA-TTTTGAATAGTCTA
129 TATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTA
2952658 AG
194 AG
2952660 CATCGATTCT
Statistics
Matches: 4619, Mismatches: 725, Indels: 168
0.84 0.13 0.03
Matches are distributed among these distances:
473 3 0.00
474 545 0.12
475 1978 0.43
476 954 0.21
477 658 0.14
478 257 0.06
479 123 0.03
480 100 0.02
481 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (475 bp):
AAAGGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCCTTAAATAAGACAAACATGAA
TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
TACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAAG
TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
CTATAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATCTTT
TCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTG
ACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACAT
TGATGCTTTGGTGTCGCAAT
Found at i:2949822 original size:952 final size:949
Alignment explanation
Indices: 2946757--2952659 Score: 6895
Period size: 952 Copynumber: 6.2 Consensus size: 949
2946747 AGGAACCAAG
* * *
2946757 AAAGGCTTTTTTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTATCAAATAAGACAATCATGA
1 AAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGA
* * *
2946822 ATAGTGATGCTAAT-CCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
66 ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* * * * *
2946886 ACACGATATTAACGATTAGGTTTCACAAGAAAGGCTTTCTTCCCTCCAATTTTTGAAAAGTCTAG
131 ACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCC-CCAATTTTTGAAAAGTCTAA
* * * * * *
2946951 GTTCGTGCCTTAAATGAGATAAACTTGGATTGTAGTAACGAA-CTTCTTTCATTTTGTGATTAGG
195 GTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTAA-TAATCTTCATTCATTTTGTGATTAGG
* ** ** *
2947015 CACTACCAACACATTTTCCCTCATTAGGATAAACAATATTGATGAATTTCTCTAGCATGGAAATC
259 CACAATAAACACA--TTCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATC
* * * * * *
2947080 ATTTCATTGCTCTATTTTGCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGTATAGATTCTC
322 TTTTCTTTGCCCTATTTTGCCTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTC
* * * * * *
2947145 GTGACAGTCTCAACACTTTTCAAGATTTGGAACCAAGAACACATTCTCTTC-CTTAGGATACAAG
387 ATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCAC-TAAGATACAAG
* * *
2947209 ACATTGATGCTTTGGGGTCGCAGTAAAAGCTTTTCTTTCCACCGTTTTTGATGGAATCAAAGTTT
451 ACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
2947274 GTCACTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCA
516 GTCACTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCA
* * *
2947339 TAAACATAGTCTTCTCGTAAGGATATATGACATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTT
581 TAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTT
* * *
2947404 CCCCCTAATTTTTTCAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATG
646 -CCCCTAA-TTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATG
* *
2947469 ATCTTCATTCATTTTGTGATTAGGCATTGTAAACCCATT-TCCCTCATTAGGATAAAAGATATTG
709 ATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCT-CCTCATTAGGATAAAAGATATTG
* *
2947533 ATGATTTTCTCTAGCATGGAAATCTTTTCTATGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
773 ATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
* * * * * * *
2947598 TAAAAAAGATAAGCATCGATTCTCGTGATAGTCTCCACTCTTTTGAAAATTAGGACCCAAGAACA
838 TGAAAAAGACAAGCATTGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACA
* * *
2947663 CATTTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAC
903 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAT
* * *
2947710 AAAGGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGTCT-T-AAATAAGACAAACATTA
1 AAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGA
* * * * *
2947773 ACT-GTTAGACTAATTCCTATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
66 A-TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * *
2947837 TATA-GAATTTTGACGGTTTGGTTTCGCAAGAAAGGCATTTCTTCCCCCCAATTTTTGAAAAGTC
130 TACACG-ATATTGACGCTTTGGTTTCGCAAGAAAGGC-TTTCTT-CCCCCAATTTTTGAAAAGTC
* * * * **
2947901 AAAGTTCGTGT-CTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCCGATT
192 TAAGTTCGT-TCCTCAAATGAGACAAACTTGGATTCTAGTAATAATCTTCATTCATTTTGTGATT
*
2947965 AGGCACAATAAACACATTCCCCTCATTAGGATAAATGATATTGATGATATTCTCTAGCATGGAAA
256 AGGCACAATAAACACATT-CCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAA
* *
2948030 TCTTGTT-TTAGCCCTATTTT-CCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGAT
320 TCTT-TTCTTTGCCCTATTTTGCC-TAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGAT
* * * *
2948093 TCTAATGACAGTCTCCAAC-CCTTTCAAGATTTGGAACCAAGAACACATTCCCTTCATTAAGATA
383 TCTCATGACAGTCTCC-ACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCACTAAGATA
* * ** * * * * *
2948157 CAAGGCATTGATAATGCTTTAGTGTCATAATAAAGGCCTTCCTTTCAACCGTTATTGATAGAATC
447 CAAGACATTG---ATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
* * * *
2948222 AAAGTTTGTCCCTCAAATAAGACAAACATTAATAGTCATACTATTCCCCATT-TATTTCAGGATT
509 AAAGTTTGTCACTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCT-TTTTAGGATT
* * * *
2948286 AGGCACCATAAATATAGTCTTCTCACAAGGATACACGATATTGACGCTTCGGTTTCACAAGAAAG
573 AGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCACAAGAAAG
* * * * * *
2948351 GCTTTCTTCCCTCGAATTTTTGAAAAGCCTAAGTTCATTCCTCGAATGAGACAAACTTGGATTCT
638 GCTTTCTTCCC-CTAATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCT
* * * * * *
2948416 AGTAATCATCTTCATTCATTTTGGGATTAGGCACTATAAACACAATCTCCTTAATAGGATAAAAG
702 AGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAAAG
* * * * *
2948481 ATGTTGATGATTTT-TCTAGCATGGAAATCGTTTCTTTGCCTTATTTTGCTTAAAATCAAAGTTC
767 ATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTC
*** * * * *
2948545 ATCCCTTGAAAAA-AGCAAGTGCTGATTCTCATGATAGTCCCCTCTCTTTTCAAGAATGGGAACC
832 ATCCCTTGAAAAAGA-CAAGCATTGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGGGAACC
* * *
2948609 AAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTCTAGTGTCACAAT
896 AAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAT
* * * * * * * * *
2948663 AAAAGCTTTTTTTTCCATCATTTTCGATAGAATCAAAGTTTTTCACTTAAATAAGACAAACAAGA
1 AAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGA
* * * * * *
2948728 AAAGTAATACTAATCCCCATTCTTTTCAAGATTAGGCACCATTAACATAGTCTTCTTATAAAGAT
66 ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* * **
2948793 ATA-GATATTGACGCTTTGATTTCGCAAGAAAGGCTTTCTTCCCCCTGTTTTTTGAAAAGTCTAA
131 ACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AATTTTTGAAAAGTCTAA
* * *
2948857 GTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGC
195 GTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGC
** * * *
2948922 ACTGTAAACACATTACCCTCATTAGGATAAATGATACTAATGATTTTCTCTATCATGGAAATCTT
260 ACAATAAACACATT-CCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTT
* * * * * * *
2948987 TTCTTT-CCTCTATTTTTCCTAAAATCAAAGTTTATCTCTTGAAAAAGACAAACAACGATTCCCG
324 TTCTTTGCC-CTATTTTGCCTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCA
* * * *
2949051 TGACAGTCGCCACTCTTTTCAAGATTGGGAACCAAGAACATATTCCCTTCACTAAGATGCATGAC
388 TGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCACTAAGATACAAGAC
* * * * * *
2949116 GTTGATACTTTGGTG-CTGCAATAAAAGCTTTTCTTTCCACCATTTTTGTTAGAATCAATGTCTG
453 ATTGATGCTTTGGTGTC-GCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * * *
2949180 TCACTTAAAAAAGACAAACATGAATAGTTAAACTAAATCCCCATTCTTTTTAGGATTAGGCACCA
517 TCACTCAAATAAGACAAACATGAATAGTCATACT-AATCCCCATTCTTTTTAGGATTAGGCACCA
* * * * * *
2949245 TAAACATAGTCTTCTCATAAAGATATACGGTATTGATGATTTGGTATCGCAAGAAAGGCTTTCTT
581 TAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTT
* * * * * * * * *
2949310 CCCCTGAATTTTTCACAAGTCTAAGTTCATGCCTCAAACGAGATAAAAAAGGATTCTAGTAGTGA
646 CCCCT-AATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * * * *
2949375 TCTTAATTC-TTTTCGTGATTTGGCATTGTAAACACATTCCCCTCGTTAGGATAAAGGATATTGA
710 TCTTCATTCATTTT-GTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAAAGATATTGA
*** * *
2949439 TGATTTTCTCTAGCATGAAAATCTTTTCTACACCCTATTTTCCTTAAAATCAAAGCTAATCCCTT
774 TGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTT
* * *
2949504 TAAAAAGACAAGCATTGATTCTCGTGACAGTCTCCACTCTTTTCAAGGTTGGGAACCAAGAACAC
839 GAAAAAGACAAGCATTGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACAC
* *
2949569 ATTCCCTTCATGAGGATACATGACATTGATGCTTTGGTGTCATAAT
904 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAT
* * *
2949615 AAAGGCTTTTCTTTCTACCGTTATTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGA
1 AAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGA
* * *
2949680 ATAGTCATGCTAAACCCCATT-TATTTCAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGA
66 ATAGTCATACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * ** * *
2949744 TACACAATATTGATGCTTTGGTTTCATAAGAAA-GCTTTCTTCACACCAATATTTGAAAAGTCTA
130 TACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCCAATTTTTGAAAAGTCTA
* * *
2949808 AGTTCGTTCCTCAAATGAGACAAACTTGGATT-TAAGTAAAAATCTTCATTTATTTTGTGATTGG
194 AGTTCGTTCCTCAAATGAGACAAACTTGGATTCT-AGTAATAATCTTCATTCATTTTGTGATTAG
* * *
2949872 GCACTATAAACACAATCTCCCT-ATTAGGATAAAAGATATTGATGATTTTCTCTAGCATAGAAAT
258 GCACAATAAACAC-AT-TCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAAT
* ** * *
2949936 CGTTTCTTTGCCCTATTTTGATTAAAATCAAAGCTCATCCCTTGAAAAAGACAAGCGTCGATTC-
321 CTTTTCTTTGCCCTATTTTGCCTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCT
* * ** * * *
2950000 CTGTGACAGTTTCCTTTCTTTTCAAGATTGGGAACTAAGAGCACATTCCCTTC-CTTAGAATACA
386 C-ATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCACTAAG-ATACA
* *
2950064 TGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGT
449 AGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * * *
2950129 TTGTC-CCCTAAATAAGACAAAGATGAATAATTATACAAATCCCCATTCTTTTTAGGATTAGGCA
514 TTGTCACTC-AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCA
* * * * *
2950193 CCGTTAACATAATCTTCTCATAAGGATATA-GATATTGACGCTTTGATTTCGCAAGAAAGGCTTT
578 CCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTT
* * * *
2950257 CTTCCCCCTATTTTTTGAAAAGTCAAATTTCGTACCTCAAATGAGACAAACATGGAATCTAGTAA
643 CTT-CCCCTAATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAA
** ** *
2950322 TGATCTTCATTCATTTCATGATTAGGCACTCAAAACACATTCTCCTCATTAGGATAAATGATATT
707 TGATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAAAGATATT
* * *
2950387 AATGATTTTCTCAATCATGGAAAA-CTTTTGC-TTGCCCTATTTTCCTTAAAATCAAAGTTCATC
772 GATGATTTTCTCTAGCAT-GAAAATCTTTT-CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * *
2950450 CCTTAAAAAAGACAAGCATTGATTCTCGTGACAGTCTCCGCTCTTTTCATGATTGGGAACCAAGA
835 CCTTGAAAAAGACAAGCATTGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGA
* *
2950515 ACACGTTCCCCTT-ATTAGGATACATGACATTGATGCTTTGGTGTCATAAT
900 ACACATT-CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAT
* * ** *
2950565 AAAGGCTTGTCCTTCAACTGTTTTTGATATAATCAAAGTTTGTCTCTCAAATAAGACAAACATGA
1 AAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGA
* * * * * *
2950630 ATAGTCATATTAATCCCCAATCCTTTCAGGATTAGGGACCATTAATATAGTCTTCTCATAAGGAT
66 ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
* * *
2950695 ACACGATATTAATGCTTTGGTTTCACAAGAAAGGCTTTCTTTCCCCCAATTTTTGAAAAGTCTAA
131 ACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC-TTCCCCCAATTTTTGAAAAGTCTAA
* * * * * * * *
2950760 GTTC-TTGCCTCAAATGAGGCAAACGTGAAATCTAGTAATGATCTTCACTCAATTCGTGATTAGG
195 GTTCGTT-CCTCAAATGAGACAAACTTGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGG
* * * *
2950824 CACAGTAAACACATTCCCCTCACTAAGATAAATGATATTGATCATTTTCTCTAGCATGGAAATCT
259 CACAATAAACACATT-CCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCT
2950889 TTTCTTTGCCCTATTTT-CCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTC
323 TTTCTTTGCCCTATTTTGCC-TAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTC
* * * * * * *
2950953 ATGACAGTCTTCAATCTTTTCAAGATTTGGAACCAAGAACCCAATCCCTTCATTAGGATACAAGA
387 ATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCACTAAGATACAAGA
* * * * *
2951018 CATTGATGCATTGGTGTTGCAAT-AAAGTCTTTCCTTTCAACCGTTATTGATAGAATCAAAGTTT
452 CATTGATGCTTTGGTGTCGCAATAAAAG-CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
* * * * ** * *
2951082 GTCTCTCAAATAAGGCAAACATTAATAGTCATACTAGTCCGTAATT-ATTTTAAGATTAGGCACC
516 GTCACTCAAATAAGACAAACATGAATAGTCATACTAATCC-CCATTCTTTTTAGGATTAGGCACC
* * * *
2951146 ATAAACATAGTCTTCTCATAGGGATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCTTTCT
580 ATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCT
* * *
2951211 TCTCACC-AATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTAAA
645 TC-C-CCTAATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * *
2951275 CATCTTCATTCATTTTGGGATTAGGCACTATAAACACAATCTCCTCATTAGGATAAAAGATATTG
708 GATCTTCATTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAAAGATATTG
* * * * * * *
2951340 ATAATTTTTTCTAGCACGAAAGTCGTTTCTTTGCCCTATTTTGCGTAAAATCAAAGTTCATCCCT
773 ATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCT
** * * *
2951405 TGAAAAAGACAAGCACCGATTCTCATGATTGTCTTCC-CTCTTTTCAAGATTGGGAGCCAAGAAC
838 TGAAAAAGACAAGCATTGATTCTCGTGATAGTC-TCCACTCTTTTCAAGATTGGGAACCAAGAAC
* * * * *
2951469 ACATTCCCTTCCTTATGATACATGACATTGATG-TTTGCTGCCGCAAT
902 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAT
* * * * * * *
2951516 AAAGGCTTTTCTTTCAATCGTTATTAATAGAATCAAAGTTTGTATCTCAAATAAAACAAACATTA
1 AAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGA
* * * * *
2951581 CTAGTCATACTAGTCCCCATT-TATTACAAGATTATGCACCATAAACATAGTCTTCTCATAAGGA
66 ATAGTCATACTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * * * * *
2951645 TAGACGATATTGATGCTTTGGTTTCGCAATAAAGGCTTTCTTCCACCGATTTTTAAAAATTCCAA
130 TACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAATTTTTGAAAAGTCTAA
* *
2951710 GTTCGTTCCTCAAATGAGACAAGCTTGGATTCTAGTAA-ACATCTTCCTTCATTTTAG-GATTAG
195 GTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTAATA-ATCTTCATTCATTTT-GTGATTAG
* * * *
2951773 GCACAATAAACACAATCTCCTCATTATGATAAAAGATATTGATGATTTTCTCTGGCATGGAAATC
258 GCACAATAAACACATTC-CCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATC
* * * * * *
2951838 GTTTCTTTGCCCTAGTTTGCTTAAAATCAAAGTTCATCCCTTGGAAAATG-TAAGCGTCGATTCT
322 TTTTCTTTGCCCTATTTTGCCTAAAATCAAAGTTCATCCCTT-GAAAAAGACAAGCATCGATTCT
* * * * * * * *
2951902 CATAATAGTCTTCTCTCTTTTCAAGATTGGGAACCAAGAATACATTTCC-TCCCTTAAGATACAT
386 CATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCAC-TAAGATACAA
* * * * * *
2951966 GACATTGATGGTTCGGTGTCCCAATAAAAGCTTTTCTTTCCATCGTTTTTTACAGAATCAAAGTT
450 GACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTT
* * ** * * * *
2952031 TATCACTTAAATAAGATTAACATGAAAAGTCA-AGCTAATCCCTAGTCTTTTCAGGATTAGGCAC
515 TGTCACTCAAATAAGACAAACATGAATAGTCATA-CTAATCCCCATTCTTTTTAGGATTAGGCAC
* ** * * * **
2952095 CATTAATGTAGTCTTCTCATAAGGATATA-GATATGGATGTTTTGGTTTTGCAAGAAAGGCTTTC
579 CATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTC
* * *
2952159 TT-CCCTATATTTTTTGAAAAGTCTAAATTTGTACCTTAAATGAGACAAACATGGATTCTAGTAA
644 TTCCCCTA-A-TTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAA
* * *
2952223 TGATCTTCCTTCATTTCGTGATTAGGCA-TGGTAAACACATTCTCCTCATTAGGATAAATGATAT
707 TGATCTTCATTCATTTTGTGATTAGGCACT-GTAAACACATTCTCCTCATTAGGATAAAAGATAT
* * *
2952287 TAATGATTTTCTCTAGCGTGGAAATCTTTTCTTT-CCCATATTTTCCTTAAAATCAAAGTTCATC
771 TGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCC-TATTTTCCTTAAAATCAAAGTTCATC
* * * * * * *
2952351 CCTTGAAAAAGGCGAGCATTGATTTTCGGGATAGTTTCCACTCTTTTCAGGATTGGGAACTAAGA
835 CCTTGAAAAAGACAAGCATTGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGA
* * * * **
2952416 ACATATTCCCTTCACTAAGATACATGACATT-ATTGCTTTGGTCTTGCAAT
900 ACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCACAAT
* * * * * *
2952466 AAAAGC-TTTCTTTCCACCATTTTTGCTAGAATCAATGTTT-TTTACTTAAATAAGACAAACATG
1 AAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCT-CTCAAATAAGACAAACATG
* * ** *
2952529 AATAGTCAAACTAAATCCCCATTCTTTCCAGGATTAGGTGCCATAAACATAGTCTTCTCATAAAG
65 AATAGTCATACT-AATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * * * * * *
2952594 ATATATGATATTGACGTTTTGGTATCGCAAGAAAGGCTTTTTTCCTCCAA-TTTTGAATAGTCTA
129 ATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAATTTTTGAAAAGTCTA
2952658 AG
194 AG
2952660 CATCGATTCT
Statistics
Matches: 4185, Mismatches: 672, Indels: 190
0.83 0.13 0.04
Matches are distributed among these distances:
946 2 0.00
947 2 0.00
948 11 0.00
949 338 0.08
950 945 0.23
951 820 0.20
952 1086 0.26
953 591 0.14
954 148 0.04
955 242 0.06
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (949 bp):
AAAGGCTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGA
ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGAT
ACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCAATTTTTGAAAAGTCTAAG
TTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCA
CAATAAACACATTCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTT
CTTTGCCCTATTTTGCCTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGA
CAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCACTAAGATACAAGACATT
GATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCAC
TCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAAC
ATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCCT
AATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
TTCATTTTGTGATTAGGCACTGTAAACACATTCTCCTCATTAGGATAAAAGATATTGATGATTTT
CTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAG
ACAAGCATTGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT
TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAT
Found at i:2953592 original size:477 final size:477
Alignment explanation
Indices: 2952657--2965203 Score: 10122
Period size: 477 Copynumber: 26.4 Consensus size: 477
2952647 TGAATAGTCT
* ** * * **
2952657 AAGCATCGATTCTTATGATAGTCTCCACTCTTTTCAAGATTGGGAATCAAGAACATGTT-CCTCT
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCT-T
* * * * * * *
2952721 CATTAGGATACATGACATTGATGCTTTGGGGTTGCAATAAAGGTTTTTTTTTCAACCG-TTTTGA
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* * * * * * * *
2952785 TAAAATCAAAGTTTGTCTCTCAAATAAAATAAACATGAATAGTCATACTAATCCTCAATCTTTTC
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTT
* * * * *
2952850 AGGATTAGGGACCATTAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACA
195 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCA
* * *
2952915 AGAAAGGC-TTTCTTCCCCCTAATTTTTGAATAGTCTAAGTTC-TCGCCTCAAATGAGACAAACA
260 AGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGT-GCCTCAAATGAGACAAACT
* * * * ** ** * * *
2952978 TAGATTCTAGTAACGATTTTCATTCAATTCATGATTAGGCA-TGGCAAATATATTCCCCTCACTA
324 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACT-ATAAACACATTCCCCTCATTA
* * * *
2953042 GGATAAATGATATTGATGATTTTCTCCAGCATCGAAATCATTTT-GTTGCCCTATTTTCCATAAA
388 GGATAAATGATATTGATGATTTTCTCTAGCATGGAAATC-TTTTCTTTGCCCTATTTTCCTTAAA
* * *
2953106 TTAAAAGTTCATCCTTTGAAAAAGAC
452 ATCAAAGTTCATCCCTTGAAAAAGAC
* * * * * *
2953132 AAGCATCGATTCTCATGATAATCTTCACCCCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
1 AAGCCTCGATTCTCGTGACAGTCTCCA-CTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * *
2953197 CATTAGGATACATGACATTGATGCTTTGGTGCCGCAATAAAAGCTTTTCTTTCCACCGTTTTTTA
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* * *
2953262 TGGAGA-CAAAGTTTGTCACTTAAATAAGACAAACATTAATAATCATACTAATCCCCATTCTTTT
130 TAGA-ATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTT
* * * * * *
2953326 TAAGATTAGGCACCATAAGCATAGTCTTTTCATAAGGATATATGATATTGATGCTTTGGTTTTGC
194 TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGC
* * *
2953391 AAGAAAGGCTTTT-TTCCCCCCAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATCAGATAAACT
259 AAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACT
2953455 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAG
324 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAG
*
2953520 GATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTGCTTAAAAT
389 GATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
*
2953585 CAAAGTTCATCCCTTTAAAAAGAC
454 CAAAGTTCATCCCTTGAAAAAGAC
* * * * * *
2953609 AAGCGTC-ATTTCTCGTGGCAGTTTCCTCTCTTTTCCAGATTGGGAACCAAAAACACATTCCCTT
1 AAGCCTCGA-TTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * ** * * * *
2953673 CATTAGGATACATGATATTGATGCGTTGGTATTACAATAAAGGCTTTTCTTTCAACCGTTATTGA
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* *
2953738 TAGAATCAAAGTTTGTCT-TTCAAAGAAGACAAACCTTAATAGTCATACTAATCCCCATT-TATT
130 TAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATTAATAGTCATACTAATCCCCATTCT-TT
* * * * * * *
2953801 TTAGGATTAGGCAACATAAACATTGGTCTTCCCATAAGCATACACGATATTGATGTTTTGGTTTC
193 TTAGGATTAGGCACCATAAACA-TAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTC
* * ** * * *
2953866 GCAAGAAAAGC-TTTCTTTCGACCAATTTTTGAATAGTCTAAGTTCATTCCTCAAATGAGACAAA
257 GCAAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
** * * *
2953930 CTTGGATTCTAGTAAACATCTTCATTCATTTTGTGATTAGGTACTATGAACACGA-TCTCCTCAT
322 CTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC-ATTCCCCTCAT
* * * * *
2953994 TAGGATAAAAGATATTGATGATTTTCTGTAGCATGTAAATCGTTTCTTT-CTCCTATTTTGCTTA
386 TAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGC-CCTATTTTCCTTA
*
2954058 AAATCAAAGTTTATCCCTTGAAAAAGAC
450 AAATCAAAGTTCATCCCTTGAAAAAGAC
*** * ** * * *
2954086 AAATGTCGATTACT-GTGATAGTCTCTTCTTTTTTCAAGATTTGGAACCAAGAACACATTCCTTT
1 AAGCCTCGATT-CTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * *
2954150 CCTTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGA
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* * * * * ** *
2954215 TAGAGTCAAAGTTTATCACTTAAATAAGATAAATAAGAATAGTCGTACTAATCCCCATTCTTTTT
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTT
* * * * * * * * *
2954280 AGGATTAAGCGCGATAAACATAGTCTTCTGATAAGCATATATGATTTTGACGCTTTAGTTTTGCA
195 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCA
* ** * * * * *
2954345 AGAAAAGCTTTTCTTCCCCTAAATTTTTTAAAAGTTTAAGTTCGTACCTCAAATGAGATAAACAT
260 AGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTT
* * * ** * * *
2954410 AGATTCTAGTAA-CAGTCTTCATTCATTTTGTAACAAGGCACTGTAAATACATT-CCCTCATTAT
325 GGATTCTAGTAATGA-TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAG
* * *
2954473 GATAAATGATATTGACGATTTTCTCTAGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAAT
389 GATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
*
2954538 CAAAGTTCATCCCTTGAAAAAGAT
454 CAAAGTTCATCCCTTGAAAAAGAC
* * * * * *
2954562 AAGCCTCAAATATCGTGACGGTCTCCACTATTTTCAAGATTTGGAACCAAGAACACATTCCCTTC
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * * ** * * * *
2954627 ATTAGGAAACTTGACATTGACGCCTTGGTGTCGCGGTAAAGGCTTTTCTTTCAACCGTTATTGAT
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGAT
* * *
2954692 AGAATCAAAGTTTATCTCTCAAATAAGACAAATATTAATAGTCATACTAATCCCCATT-TATTTT
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCT-TTTT
* * *
2954756 AGGATTAGGCAGCATAAACATAGTCTTCTCATAAAGATATACGATATTGACGCTTTGGTTTCGCT
195 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCA
* *
2954821 AGAAAGGC-TTTC-TCCACACCAATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACT
260 AGAAAGGCTTTTCTTCC-CCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACT
* * * * *
2954884 TGGATTCTAGTTAA-CATCTTCATTCATTTTAG-GATTAGCCACTATAAACACAATCTCCTTATT
324 TGGATTCTAG-TAATGATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCCCCTCATT
* * * * *
2954947 AGGATAAAAGATATTGATGATTTTCTCTAGCATGG-AATTTGTTTCTTTACCCTATTTTGCTGAA
387 AGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCT-TTTCTTTGCCCTATTTTCCTTAA
*
2955011 AATCAAAGTTCATCTCTTGAAAAAGAC
451 AATCAAAGTTCATCCCTTGAAAAAGAC
* ** * * *
2955038 AAGCGTTAATTCTCGTGATAGTCTCCTCTCTTTTCAAGATTTGGAACCAAGAACACATTCCCTTC
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * *
2955103 CTTAGGATACATGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGAT
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGAT
* * *
2955168 AGAATCAAAGTTGGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTTA
* * * * *
2955233 GGATTAGGCACCATAAACATAGTCTTCTCATAAGCATATAAGATTTTGACCCTTTGGTTTGGCAA
196 GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAA
* * * *
2955298 GAAAGGCTTTTCTTCCCTCCAATTTTTGAAAAGTCTAAGTTTGTACCTCAAAAGAGACAAACATT
261 GAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC-TT
* ** *
2955363 -GATTCTAGTAATGATCTTCATTCATTTTGTAATGGGGCACTGTAAACACATTCCCCTCATTAGG
325 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGG
* * * *
2955427 ATAAATGATATTGATGATTTTCTCTCGCGTGAAAATCTTTTCTTTGCCATATTTTCCTTAAAATC
390 ATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
2955492 AAAGTTCATCCCTTGAAAAAGAC
455 AAAGTTCATCCCTTGAAAAAGAC
* * * * * *
2955515 AAGCCTCGATTC-CTGTGATAGTCCCCTCTCTTTTCAAGATTGGGAACCGAGGATACATTCCCTT
1 AAGCCTCGATTCTC-GTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * * * * * * *
2955579 CATTAGGAAACTTGACATTGGTGCTTTGGGGTCACAATAAAAACTTTTCTTTCAATCATTGTTGA
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* * * * * * *
2955644 TA-AA-CACATAGTTTGACTCCTAAATAAGACAAATATTAATTGTCATACTAATCTCTAGTT-AT
130 TAGAATCA-A-AGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCA-TTCTT
* * * * * *
2955706 TTCAGGATTAGGCACCGTAAACATAGTCTTCTCAAAAGCATACACAATATTGACGCTTTGGTTTC
192 TTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTC
* * * *
2955771 GCAAGAAAGGCTTTT-TTCCCACCAATTTTTGAAAAGTTTAAGTTTGT-TCTGCAAATGAGACAA
257 GCAAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCT-CAAATGAGACAA
* * ** * * **** *
2955834 ACTTGGATTCT-GCAAATCAAAGTTCATCCCTTGAAAAAGA-TAAGC-CTCA-AATATCGTGACG
321 ACTTGGATTCTAG-TAAT-GATCTTCATTCATT--TTGTGATTAGGCACT-ATAA-A-C---AC-
* * * * * * ** * ** *
2955895 GTCTCCACTC-TT---TTCAA-GAT-TTG--GA---AC-CAAG-A-ACACATTCCCTTCATTAG-
375 AT-TCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGA-AATCTTTTC-TTTGC
*** ** * * *** *** ** *
2955945 GAAACTTGACATTGACGCCTTGGTGTCA--CGGT-AAATGAGAC
437 CCTA-TTTTCCTTAAAATCAAAGT-TCATCCCTTGAAA-AAGAC
* * * * * * * * * ** * *
2955986 AAACTTGGATTCTAGTTAACA-TCTTCATTCATTTT-AGGATTAGCCACTATA-AACACAATCTC
1 AAGCCTCGATTCTCG-TGACAGTCTCCACTC-TTTTCAAGATTGGGAACCA-AGAACACATTC-C
* * * * ** * * ** **
2956048 CTT-ATTAGGATAAAAGATATTGATGATTTTCTCTAGC-ATGGAATTTGTTTCTTTACC--C-TA
62 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCT-TTTCTTT-CCATCGT-
* * ** * * ** * * *
2956108 TTTTGCTGAAAATCAAAGTTCATCTCTTGAAA-AAGACAAGCGTTAATTCTCGTGA-TAGTCTCC
124 TTTTGAT-AGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATTAATAGTCAT-ACTAATCCCC
* * * * * * * * * *
2956171 -TCTCTTTTCAAGATTTGGAACCA-AGAACACATTCCCTTC-C-TTAGGATACATGATATTGATG
186 AT-TCTTTTTAGGATTAGGCACCATA-AACATAGT--CTTCTCATAAGGATATACGATATTGACG
* * * ** * * *
2956232 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATC-GTTTTTGATAGAA-TCAAAGTTGGT-CACT
247 CTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTGA-A-AAGTCTAAGTTCGTGC-CT
* * * * * * ** * *
2956294 TAAATAAGACAAACATGAATAGTC-A-TACTAATCCCCATTCTTTTTAG-GATTAGGCACCATAA
309 CAAATGAGACAAACTTGGAT--TCTAGTAATGATCTTCATTCATTTT-GTGATTAGGCACTATAA
* * ** * * * *** ** * * * *
2956356 ACATAGTCTTCTCATAAGCATATAA-GATTTTGACCCTTTGGTTTGGCA-AGAAAGGCTTTTCTT
371 ACACATTCCCCTCATTAGGATA-AATGATATTGATGATTTTCTCTAGCATGGAAA-TCTTTTCTT
** * * * ** * *
2956419 CCCTCCAATTTT--TGAAAAGTCTAAGTTTGTACC-TCAAAAGAGAC
434 TGC-CCTATTTTCCTTAAAA-TCAAAGTTCATCCCTTGAAAA-AGAC
* * * * * * ** * * **
2956463 AAACATTGATTCTAGT-A-ATGATCTTCATTCATTTTGTA-ATGGGGCACTGTA-AACACATTCC
1 AAGCCTCGATTCTCGTGACA-G-TCTCCACTC-TTTTCAAGATTGGGAAC-CAAGAACACATTCC
* * * ** * * * *
2956524 CTTCATTAGGATAAATGATATTGATGATTTTCTCTCGC-GTGAAAATCTTTTCTTTTCCAT-ATT
62 CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAT-AAAAGCTTTTC-TTTCCATCGTT
*** * ** * * * ** * *
2956587 TTCCTTAAAATCAAAGTTCATCCCTTGAAA-AAGACAAGCCTCGAT--TCCTGTGA-TAGTCCCC
125 TTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATTAATAGT-C-AT-ACTAATCCCC
* * * * * * * * * * **
2956648 ACTCTTTTCAAGATTGGGAACCGAGGATACAT--TC-CCTTCATTAGGA-A-ACTTGACATTGGT
186 ATTCTTTTTAGGATTAGGCACC-A-TAAACATAGTCTTC-TCATAAGGATATAC--GATATTGAC
** * * ** * *** * ** *
2956708 GCTTTGGGGTCACAATAAAAACTTTTCTTTCAATC-ATTGTTGATAAACAC-ATAGTT--TGACT
246 GCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTGA-AAAGTCTA-AGTTCGTGCCT
* ** * * * * *
2956769 CCTAAATAAGACAAA-TATTAATTGTCA-TACTAATC-TCTAGTT-ATTTCAG-GATTAGGCACC
309 -C-AAATGAGACAAACT-TGGATTCT-AGTAATGATCTTC-A-TTCATTT-TGTGATTAGGCACT
* * * ** ** * * ** * * ** * * * *
2956829 GTAAACATAGTCTTCTCAAAAGCATACACAATATTGACGCTTTGGTTTCGCA-AGAAAGGCTTTT
367 ATAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAA-TCTTTT
** * * ** ** * *
2956893 -TTCCCACCAATTTT--TGAAAAGTTTAAGTTTGT-TC-TGCAAATGAGAC
431 CTTTGC-CCTATTTTCCTTAAAA-TCAAAGTTCATCCCTTG-AAA-AAGAC
* * * * * * * ** * * *
2956939 AAACTTGGATTCTAGTTAACA-TCTTCATTCATTTTGC--GATTATGCACTATA-AACACAATCT
1 AAGCCTCGATTCTCG-TGACAGTCTCCACTC-TTTT-CAAGATTGGGAACCA-AGAACACATTC-
* * ** * ** * * *** * *
2957000 CC-TCATTAGGATAAAAGATGTTGATGATTTTCTCTAGCAAGGGAATCGTTTCTTTGCC-T--TA
61 CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTT-CCATCGT-
* * * ** * * * * ** ** *
2957061 TTTTGCTTAAAATCAAAGCTCATCCCTTTAAAAAAGACAAGCATTGATTCTTGTGAC-AATCGCC
124 TTTTG-ATAGAATCAAAGTTTGTCTC-TTAAATAAGACAAACATTAATAGTCAT-ACTAATCCCC
* * * * * * ** * * * * * * * *
2957125 ACTCTTTTCAAGATTGGGAACTAGGAACAAATTC-TCTTCCTTAGGATACAAGACATTGATGCTT
186 ATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTC-TCATAAGGATATACGATATTGACGCTT
* * * ** * * * ** *
2957189 TGGTGTT-GCAATAAAAGCTTTTCTTTCCATC-ATTTTTGATAGAA-TCAAAATTTGTTACTTAA
250 TGGT-TTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTGA-A-AAGTCTAAGTTCGTGCCTCAA
** * *
2957251 AAAAGACAAACAT-GA-T-TAGTCATACT-AT-TTCCCATT-ATTTT-TAGGATTAGGCACCATA
312 ATGAGACAAACTTGGATTCTAGT-A-A-TGATCTT--CATTCATTTTGT--GATTAGGCACTATA
* ** * * ** * * * *
2957309 AACATAGTT-TTCTTATAAGGATGTATGATGTTGACGCATCGGTT-TC-A-CA-GGAAAGGCTTT
370 AACACA-TTCCCCTCATTAGGATAAATGATATTGATG-AT--TTTCTCTAGCATGGAAA-TCTTT
** * * * * *
2957369 TCTTCCCCCTAATTT-CTTAAAACTCTAAGTTCGTGCC-TCAAATGAA-AC
430 TCTTTGCCCTATTTTCCTTAAAA-TCAAAGTTCATCCCTTGAAA--AAGAC
* * * * * * * * * *** * * * * *
2957417 AAACATGGATTCTAGTAATAATCTTCATTCTTTTTGCGATTAGGCACTATA-AACGCATTCCCCT
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCA-AGAACACATTCCCTT
* ** * ** * * * * * * *
2957481 CATTAGGATAAATGATGTTGATGATTTTCTCTGGC-ATGGAAATCTTTTCTTTGCCCT-ATTTTC
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAT-AAAAGCTTTTCTTT-CCATCGTTTTT
** * ** * * *** *** * * *
2957544 CTTAAAATCAAAGTTCATCTCTTGAAA-AAGACAAGCCTCGCTTCCCATGA-TAGTCTCCACTCT
128 GATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATTAATAGTCAT-ACTAATCCCCATTCT
* * * * * * * * * * *
2957607 TTTCAAGATTGGGAACCA-AGGACACATTC-CCTTCATTAGGA-A-ACTTGACATTGATGCTTTG
191 TTTTAGGATTAGGCACCATA-AACATAGTCTTC-TCATAAGGATATAC--GATATTGACGCTTTG
* * * * ** * * * * * *
2957668 GTGTCACAATAAAGGCTTTTCTTTCAACC-GTTTTTGATAAACTCAAAGTTTGT-CTCTTAAATA
252 GTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTGA-AAAGTCTAAGTTCGTGC-CTCAAATG
* * * *
2957731 AGACAAATCTT-AATAGTCATACTAAT-ATC--CATTTATTTCAG-GATTAGGCA-TCATAAACA
315 AGACAAA-CTTGGAT--TC-TAGTAATGATCTTCATTCATTT-TGTGATTAGGCACT-ATAAACA
* * ** * * * * * * * ** * * * *
2957790 TAGTCTTCTCATAAGCACACAGGATATTGACGCTTTGGTTTCGCA-AGAAAGGC-TTT-TTT-CC
374 CATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAA-TCTTTTCTTTGCC
*
2957851 C-A-----C-------C-AA-TT--T---TTG-AAAAGTC
438 CTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGAC
* * *
2957870 TAAGCTTTGATTCTCATGACAAG-CTCCACTCTTTTCAAGATTGGG-ACCTAAGAACACATTCCC
1 -AAGCCTCGATTCTCGTGAC-AGTCTCCACTCTTTTCAAGATTGGGAACC-AAGAACACATTCCC
* * * * *
2957933 TTCCTTAAGATACATGACATTGATGCTTTGCTATCGCAAGAAAAGCTTTTCTTTCCATCGTTTTT
63 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTT
* * * * * *
2957998 GATAGAATCAAAGTTTGTCACATAAATGAGACAAACATGAATAGTCATACTATTCCCTATTCTTT
128 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTT
* * * * * *
2958063 TTAGCATTAGGCACCATAAGCATAGTTTTCTCATAAGGATGTATGATGTTGACGCTTTGGTTTCG
193 TTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCG
**
2958128 CAAGAAAGGCTTTTCTTCCCTTCAATTTTTGAAAAGTCTAAGTTCAGTGCCTCAAATGAGACAAA
258 CAAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTC-GTGCCTCAAATGAGACAAA
* * ** * * *
2958193 CATGGATTCTAATAAACATCTTCATTCAGTTTGTGATTAGGCACTATGAACACGA-TCTCCTCAT
322 CTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC-ATTCCCCTCAT
* * * * * *
2958257 TAGGATAAAAGATATTGATGTTTTTCTCTAGCATGTAAATCGTTTCTTTCCCCTATTTTGCTTAA
386 TAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAA
*
2958322 AATCAAAGTTTATCCCTTGAAAAAGAC
451 AATCAAAGTTCATCCCTTGAAAAAGAC
* * * * * * ** *
2958349 AAACGTCAATTC-CTGTGATAGTTTCCTCTCTTTTCAAGATTTAGAACTAAGAACACATTCCCTT
1 AAGCCTCGATTCTC-GTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * ** * *
2958413 CCTTAGGATACATGACATTGATGCTTCGGTGTCGCAGGAAAAGCTTTTCTTTCCATCATTTTTTA
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* * * * * * * *
2958478 TAGAATCAAATTTTGTCACATAAATAAGACAAATATAAATAGTCGTACTGATCCCTATTCTTTTT
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTT
*** * * * **
2958543 AGGATTAGGCGTGATAAACATAGTCTTCTCATAAGCATATACGATTTTGACACTTTGGTTTTTCA
195 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCA
* *** * *
2958608 AGAAAGGCTTTTCTTCCCCCTAATTTTTGAAAAGTCTAAGTTCGTATGTCAAATGAGGCAAACAT
260 AGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTT
* * * * *
2958673 GGATTCTAGTAACGATCTTCATTCATTTTGTAATGAGGCACTGTAAATACATTCCCCTCATT-GT
325 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAG-
* *
2958737 GATAAATGATATTGACGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
389 GATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* *
2958802 CAATGTTCATCCCTTGAAAAAGAA
454 CAAAGTTCATCCCTTGAAAAAGAC
* * *
2958826 AAGCCTCAATTATCGTGACAGTGTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * * * * * * *
2958891 AATAGGAAACCTGACATTGACGCTTTGGTGTGGCAGTAAAAGCTTTTCTTTCTATGGTTATTGAT
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGAT
* * * * * ** *
2958956 AGAATC-ATGCTTGTCTCTCAAATAAGACAAACATTAATAGTTATACCAATCCTAATT-TATTTG
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCT-TTTT
* *
2959019 AGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATATATGATATTGACGCTTTGGTTTCGCA
195 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCA
* * * * * *
2959084 AAAAAGGC-TTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATTCCTCAAATGAAACAAACTT
260 AGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTT
* * * * * *
2959148 GGATTCTAGTTAA-AATATTCATTTATTTT-TGGATTAGCCACTATAAACACAATCTCCTCATTA
325 GGATTCTAG-TAATGATCTTCATTCATTTTGT-GATTAGGCACTATAAACACATTCCCCTCATTA
* * * *
2959211 GGATAAAAGATATTGATGATTTTCTCTAGCATGG-AATTTGTTTCTTTGCCCTATTTTGCTGAAA
388 GGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCT-TTTCTTTGCCCTATTTTCCTTAAA
* *
2959275 ATCAAAGTTCATCTCTTGTAAAAGAC
452 ATCAAAGTTCATCCCTTGAAAAAGAC
**** * * * * * * *
2959301 AAGCGAAAATTCTCGTGACAGTCTCCTCTCTTCTCAAGATTTGGAACTAATAACAAATTCTCTTT
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTC-CCTT
*
2959366 C-TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGA
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* * * * *
2959430 TAGAATCAAAGTTGGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCTCATTTTTTTT
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTT
** * * * * *
2959495 AGGATTAGGCACCATGGACATAGTCTTCTCATAAGCATATACGATTTTGGCCCTTTGGTTTTGCA
195 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCA
* * * * *
2959560 GGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGCCTAAGTTTGTACCTAAAATGAGACAAACAT
260 AGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC-T
* * *
2959625 T-GATTCTAGTAATGATCTTCATTCATTTTGTAATGAGGCACTATAAACACATTCCCCTTATTAG
324 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAG
* * * *
2959689 AATAAATGATATTGATGATTTTCTCTAGCATGAAAATTTTTTCTTTGCCCTATTTTCATTAAAAT
389 GATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
2959754 CAAAGTTCATCCCTTGAAAAAGAC
454 CAAAGTTCATCCCTTGAAAAAGAC
* * * ** *
2959778 AAGCCTCGATTCTCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAAAACACTTTAACTTT
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * * * * * * *
2959843 ATTAGGAAACTTAACATTAATGCTTTGGTGAT-GCAATAAAGGCTTTTCTTTCAACCGTTATCGA
66 ATTAGGATACATGACATTGATGCTTTGGTG-TCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* * * * * *
2959907 TAGAAACAAAGTTTGTCTCTCAAATAAGACAAATATTAATAGCCTTACTGATCCCCATT-TATTT
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCT-TTT
* * * * * *
2959971 CAGGATTAGGCATCATAAA-ATAGTCTTTTCATATGGATATCCGATATTGACGCTTTGGTTTCAC
194 TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGC
* * *
2960035 AAGAAAGGCTTTTCTTCGCCCCAATTTTTGAAAAGCCTAAGTTCGTGCCTCAAATTAGACAAACT
259 AAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACT
* *
2960100 TGGATTCTAGTAATGATCTTCGTTCAATTTGTGATTAGGCACTATAAACACATTCCCCTCATTAG
324 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAG
* * * * *
2960165 GATAAACGGTATTGATGATTTTTTCTAGCATGGAAATCTTTTCTTTGTCTTATTTTCCTTAAAAT
389 GATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
2960230 CAAAGTTCATCCCTTGAAAAAGAC
454 CAAAGTTCATCCCTTGAAAAAGAC
* * * * ** *
2960254 AAGCCTTGATTCTCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAAAACACTTTAACTTT
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * * * * * * **
2960319 TTTAGGAAACTTAACATTGATGCTTTGGTGAT-GCAATAAAGGCTTTTCTTTCAACCGTTATCAA
66 ATTAGGATACATGACATTGATGCTTTGGTG-TCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* * * **
2960383 TAGAAACAAAGTTTGTCTCTCAAATAAGACAAACATTAATACTCATACTAATCCTAATT-TATTT
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCT-TTT
* * *
2960447 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACACTTTGGTTTCGC
194 TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGC
* * * * *
2960512 AAGAAA-GCCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGATCGTTCCTCAAATGAGACAAACC
259 AAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACT
* ** * * * * *
2960576 TGGATTCTAGTTACCATCTTCATTTATTTTAG-GATTAGGCACTATAAACAGAATCTCCTTATTA
324 TGGATTCTAGTAATGATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCCCCTCATTA
* * * *
2960640 GAATAAGA-GATATTGATGATTTTCTCTAGCCTGGAAATCGTTTCTTTGCCCTATTTTGCTTAAA
388 GGATAA-ATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* * *
2960704 ATTAAAGTTCATCCCTTAAAAAAGAT
452 ATCAAAGTTCATCCCTTGAAAAAGAC
* * * * * *
2960730 AAGCGTCAATTCTCATGACAGTCTCCTCTCTTTTTTCAACATTGGGAGCCAAGAACACATTCCCT
1 AAGCCTCGATTCTCGTGACAGTCTCCACTC--TTTTCAAGATTGGGAACCAAGAACACATTCCC-
* * * * *
2960795 TTC-TTAAGATACAAGACATTGATGCTTTGGTGTCACAATAAAAGC-CTTCTTTTCTATCGTTTT
63 TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTC-TTTCCATCGTTTT
* * * * * *
2960858 TGATAGAATCAAAGTTTATCACTTAAATAAGGCAAACATGAAAAGTCCTACTAATCCCCATTCTT
127 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTT
* * * * * * * * * *
2960923 CTTAGGATTGGGCACCATAAGCATAGTTTTCTCATAAGAATGTATGATGTTGATGCTTTGGCTTC
192 TTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTC
* * * * * * **
2960988 ACAGGAAAGACTTTTCTTCTCCCAAATTTTTGAAAAGTCTAAGTTCGTACCTTTAATGAGACAAA
257 GCAAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * *
2961053 -TATGGATTCTAGTAATGATCTTCATCCGTTTTGCGATTAGGCACTGTAAACACATTCCCCTCAT
322 CT-TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCAT
*
2961117 TAGGATAAATGATATTGATGATTTTCTGC-AGCATGAAAATCTTTTCTTTGCCC-ATTTTCCTTA
386 TAGGATAAATGATATTGATGATTTTCT-CTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTA
* *
2961180 AAATCAAAGTACATCCCTTGAAAATGAC
450 AAATCAAAGTTCATCCCTTGAAAAAGAC
* * * * * *
2961208 AAGCCTCAATTC-CTGTGATAGTCTCCACTCTTTTCAACATGGGGAACCATGGACACATTCCCTT
1 AAGCCTCGATTCTC-GTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * * * *
2961272 CATTAGGAAACATGGCATTAATGCTTTGGTGTCACAATAAAGGCTTTTCTTTCAATCGTTTTTGA
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* * * * * * *
2961337 TA-AAGTCAAAGTTTGACTCCTAAATAAGACAAATATTAATTGTTATACTAATCTCCAGTT-ATT
130 TAGAA-TCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCA-TTCTTT
* * * * * * *
2961400 TCAGGGTTAGGCACCGTAAACATAGTCTTCTCATAAGCATACACAATATTGACGCTTTGGTTTAG
193 TTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCG
* *
2961465 CAAGAAAGGCTTTT-TTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTTCCTTAAATGAGACAAAC
258 CAAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * ** * * *
2961529 TTGGATTCTAGTTAA-CATCTTCATTCATTTTGGGATTACTCACTATAAACACAATCTCCTAATT
323 TTGGATTCTAG-TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATT
* ** * * * *
2961593 AGGATAAAAGATATTGATGATTTTCTCTAGCAAAGAAATCATTTCTTTGCCTTATTGTGCTTAAA
387 AGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
* *
2961658 ATCAAAGTTCATCCCCTTAAAAAATAC
452 ATCAAAGTTCAT-CCCTTGAAAAAGAC
** * * ** *
2961685 AAGTGTTGATTCTCGTGACAATCTCTGCTTTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * * **
2961750 CTTAGGATACAAGACATCGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATAATTTTTGAT
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGAT
* * * *
2961815 AGAATCAAAATTTGTCACTTAAATAAGACAAACATGAATAGTCATACTATTCCCCATTCTTTTTA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTTA
* * * * *
2961880 GGATTAGGCACCATAAACATAGTTTTCTCATAAGGATGTATGATGTTGACGCTTTGGTTTCGCAG
196 GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAA
* * * * * ** * *
2961945 GAAAGGCTTTTCTTCCCTCTAATTTTTTAAAAGTCTAACTTTGCACCTCAAATGAGACAAACATA
261 GAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTG
* * * * *
2962010 GATTCTAGTAATAATCTTCATTCTTTTTGCGATTAGGCACTGTAAACGCATTCCCCTCATTAGGA
326 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGA
* * *
2962075 TAAATGATATTGATGATTTTCTCTAGCGTAGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCA
391 TAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
2962140 AAGTTCATCCCTTGAAAAAGAC
456 AAGTTCATCCCTTGAAAAAGAC
* * * * *
2962162 AAGCCTCGATTCTCGCGATAGTCTCCAGTCTTTTCAAGATTGGGAACCAAGGACATATTCCCTTC
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * * * * *
2962227 ATTAGGAAACTTGACATTGATGCTTTGGTGTCACGATAAAGGCTTTTCTTTCAATCGTTGTTGAT
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGAT
* * *
2962292 A-ATCTCAAAGTTTGCCTCTTAAATAAGACAAATATTAATAGTCATACTAATCCCCATT-TATTT
131 AGA-ATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCT-TTT
** * **
2962355 TAGGATTAGGCACTGTAAACATAGTCTTCTCATAAGCATACGCGATATTGACGCTTTGGTTTCGC
194 TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGC
* * * *
2962420 AAGAAAGGCTTTT-TTCCCACCAATTTTTGAAAAGTCTAAGTTCCTTCCTCAAACGAGACAAACT
259 AAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACT
* * * * * * *** * * *
2962484 TGGATTTTAGTTAA-CAGCTCCATTCAGTTTGGGATTATATACTATAAACACAATCTCCTTATTA
324 TGGATTCTAG-TAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTA
* * * * * * *
2962548 GGATAAAAGATATTGATGATTTTCTCTAGCAAGGAAATCGTGTCTTTGCTCTATTTTGCTTAAGA
388 GGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
2962613 TCAAAGTTCATCCCTT-AAGAAAGAC
453 TCAAAGTTCATCCCTTGAA-AAAGAC
* * * * * *
2962638 AAGCGTTGATTCTCGTGACAATCTCCACTCTTTTGAAGATTGGGACCCAGGAACACATTCCCTTT
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCC-TT
* ** * *
2962703 C-TTAAGATACATGACATTGATGCTTTTCTATCGCAATAAAAGCTTTTCTTTCCATCATTTTTGA
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* ** * *
2962767 TAGAATCAAAGTTTGT-TACTTAAATAACACAAACACGAATAGTCATACTATTCCCCATTCATTT
130 TAGAATCAAAGTTTGTCT-CTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTT
** * ** * * * * * * * *
2962831 TAGCTTTAAGCACCGCAAACATAGTTTTCTCATAAAGATGTATGATGTTGATGCTTTCGTTTCGT
194 TAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGC
* * **
2962896 AAGAAAGGTTTTTCTT-CCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCCCAAATGAGACAAAAA
259 AAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACT
* ** * * * * *
2962960 TGGATTCAAGTAAACATCTTCATTCATTTTGTGATTAGGCACTATGAACATGA-TCTCCTTATGA
324 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA-CATTCCCCTCATTA
* * * * *
2963024 GGATAAAAGATATTGATGATTTTCTCTAGCATGTAACTCGTTTCTTT-CCTCTATTTTGCTTAAA
388 GGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAA
*
2963088 ATCAAAGTTTATCCCTTGAAAAAGAC
452 ATCAAAGTTCATCCCTTGAAAAAGAC
* * * * * * **
2963114 AAACGTTGATTC-CTGTGATAGTCTCCTCTCTTTTCAAGATTTGGAACCAAGAACACATTCTTTT
1 AAGCCTCGATTCTC-GTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * * *
2963178 CCTTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTAA
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGA
* * * * * * *
2963243 TAGAATCAAATTTTGTCACTTAAATAAGATAAATATGAATAATCGTACTAATCCCCATTCTTTTT
130 TAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTT
* * * * * * *
2963308 AGGATTAGGCGCGATAAACATAGTCTTCTCGTAAGCATATACGATTTTGACCCTTTGGTTTTGCA
195 AGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCA
* * *
2963373 AGAAAGGCTTTTCTTCCCCCTC-ATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGGCAAACA
260 AGAAAGGCTTTTCTTCCCCC-CAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACT
* * * * * * * * *
2963437 TGGATTCTAGTAACGATCCTCATTCATTTTGTAATGAGGCAGTGTAAATACATTCCCTTTATTAG
324 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAG
* * *
2963502 GATAAATGATATTGACGATTTTCTCTAGCATGAAAATCTTTTTTTTGCCC--TTTTCCTTAAAAT
389 GATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
*
2963565 CAAAGTTCATCCCTTGAAAAAGAT
454 CAAAGTTCATCCCTTGAAAAAGAC
* * *
2963589 AAGCCTCGATTATCGTGACAGTGTCCACTCTTTTCAAGATTGGGAACTAAGAACACATTCCCTTC
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * *** * * * * *
2963654 ATTAGGAAACTTGACATTGACATTTTGTTGTCACAATAAAGGCTTTTCTTT-CAACTGTTATTGA
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATC-GTTTTTGA
* * *
2963718 TAGAATATCAAAGTTCGTCTCTCAAATAAGACAAATATTAATAGTCATACTAATCCCCATT-TAT
130 TAG-A-ATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCT-T
* * * * *
2963782 TTCAGGATTCGACACCATAAACATAGTCTTCTCATAAAGATATACGATATTGACGCTTTGGTTCC
192 TTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTC
* * * * *
2963847 GCAAGAAAGGC-TTTCTTCCCACCAA-TTTTGAAAAGTCTAAGTTCATTCGTCAAATAAGACAAA
257 GCAAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * *
2963910 CTTGGATTCTAGTTAA-CATCTTCATTCATTTTAG-GATTAGGCACTATAAACAAAATCTCCTCA
322 CTTGGATTCTAG-TAATGATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCCCCTCA
* * * ** * *
2963973 TTAGGATAAAAGATACTGATGATTTTCTCTAGCATAG-AATAAGTTTCTTTGCCCTATTTTACTG
385 TTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAAT-CTTTTCTTTGCCCTATTTTCCTT
** *
2964037 AAAATCAGCGTTCATCTCTTGAAAAAGAC
449 AAAATCAAAGTTCATCCCTTGAAAAAGAC
* * * * * *
2964066 AAGCGTCAATTCTCATGACAGTCTCCTCTCTTTTCAAGATTTGGAACCAAGAACACATTCTCTTC
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * * * * *
2964131 CTTGGGATACATGACATTAATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTTCATCGTTTTTGAT
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGAT
* ** * * * *
2964196 AGAATCAATGTCGGTCACTTAAATAAGATAAACATGAATAGTCATACTGATCCCCATTCTTTTTA
131 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTTA
* * * *
2964261 GGATTAGGCACCATAAACATAGTCTTCTCATAAGCATATACGATTTTGACCCTTTGGTTTTGCAA
196 GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAA
* * * *
2964326 GAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGCCTAAGTTTGTACCTCAAATGAGACAAAGATT
261 GAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA-CTT
* * * ** *
2964391 -GATTCTAGTATTGATCTTCATTCATTTTGTAATGAGGCACTGCAAACACATTCCCCTCTTTAGG
325 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGG
*
2964455 ATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATC
390 ATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
2964520 AAAGTTCATCCCTTGAAAAAGAC
455 AAAGTTCATCCCTTGAAAAAGAC
* * * * *
2964543 AAGCCTGGATTCTCGTGACAGTCTCCACTCTTTTTAAGATTGGGAACCAAAAATACTTTCCCCTT
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATT-CCCTT
* * * * * * ** * * * *
2964608 TAGTAGGAAACTTAACATTCATGCTTTGGTGTCATAAT-AGAGCCTTTTCTTT-CAACTGTTATC
65 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAG-CTTTTCTTTCCATC-GTTTTT
* * *
2964671 GATAGAATCAAAGTTTGTCTCTCAAATAAGACAAATATTAATAGTTATACTAATCCCCATT-TAT
128 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCT-T
* * * * *
2964735 TTCAAGATTAGGCACCATAAACATAGTCTTTTCGTAAGGATATACAATATTGACGCTTTGGTTTC
192 TTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTC
* * * * *
2964800 CCAAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAATGCCTAAGTTCGTGCCTTAAATTAGACAAA
257 GCAAGAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
*
2964865 CTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCCCATT
322 CTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATT
* * *
2964930 AGGATAAATGATATTGATGATTTTCTCTGGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTCAA
387 AGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAA
*
2964995 ATCAAAGTTCATCCCTTGAAGAAGAC
452 ATCAAAGTTCATCCCTTGAAAAAGAC
* * * *
2965021 AAGGCTCGATTCTCATGACAGTCTCCACTCTTTTCATGATTGGGATCCAAGAACACATTCCCTTC
1 AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
* * **
2965086 ATTAGGATACATGGCATTGATGCTTTGGTGCCGCAATAATGGCTTTTCTTT-C-T-GCTATTATT
66 ATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCG-T-TT-TT
* * *
2965148 GATAGAATCAAAGTTTATCTCTCAAATAAGACAAACATTAATAGTCATGCTAATCC
128 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCC
2965204 TAATTTATTT
Statistics
Matches: 9843, Mismatches: 1859, Indels: 738
0.79 0.15 0.06
Matches are distributed among these distances:
452 7 0.00
453 16 0.00
454 193 0.02
455 82 0.01
456 10 0.00
457 4 0.00
458 3 0.00
459 3 0.00
460 2 0.00
461 1 0.00
464 6 0.00
465 1 0.00
466 1 0.00
468 1 0.00
469 11 0.00
470 26 0.00
471 179 0.02
472 70 0.01
473 18 0.00
474 27 0.00
475 958 0.10
476 3038 0.31
477 3706 0.38
478 1277 0.13
479 176 0.02
480 10 0.00
481 2 0.00
482 3 0.00
483 6 0.00
484 6 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (477 bp):
AAGCCTCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTC
ATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGAT
AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCTTTTTA
GGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAA
GAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACTTG
GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGA
TAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
AAGTTCATCCCTTGAAAAAGAC
Found at i:2966004 original size:13 final size:13
Alignment explanation
Indices: 2965986--2966012 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2965976 ACAATTTGGG
2965986 TTGTATCGATACA
1 TTGTATCGATACA
2965999 TTGTATCGATACA
1 TTGTATCGATACA
2966012 T
1 T
2966013 CTTGTGTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2966009 original size:33 final size:32
Alignment explanation
Indices: 2965967--2966030 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
2965957 TACAAGCCAA
2965967 TGTATCGATACAAT-TTGGGTTGTATCGATACAT
1 TGTATCGATAC-ATCTTGGG-TGTATCGATACAT
*
2966000 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
2966031 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:2966119 original size:20 final size:19
Alignment explanation
Indices: 2966094--2966131 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
2966084 TTCTTTGTAA
2966094 GTATCGATACATTTGAAGGT
1 GTATCGATACATTT-AAGGT
2966114 GTATCGATACATTTAAGG
1 GTATCGATACATTTAAGG
2966132 GTTTTCACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.34
Consensus pattern (19 bp):
GTATCGATACATTTAAGGT
Found at i:2966694 original size:16 final size:16
Alignment explanation
Indices: 2966673--2966704 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
2966663 CCTTAATAAA
2966673 GCAATTTAACAATTTC
1 GCAATTTAACAATTTC
2966689 GCAATTTAACAATTTC
1 GCAATTTAACAATTTC
2966705 TTTTAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (16 bp):
GCAATTTAACAATTTC
Found at i:2968762 original size:8 final size:8
Alignment explanation
Indices: 2968743--2968774 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
2968733 ATTTTCAACA
2968743 ACAAACATC
1 ACAAA-ATC
2968752 ACAAAATC
1 ACAAAATC
2968760 ACAAAATC
1 ACAAAATC
2968768 ACAAAAT
1 ACAAAAT
2968775 TTAATCAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.78
9 5 0.22
ACGTcount: A:0.62, C:0.25, G:0.00, T:0.12
Consensus pattern (8 bp):
ACAAAATC
Found at i:2972775 original size:477 final size:473
Alignment explanation
Indices: 2971808--2974319 Score: 2866
Period size: 477 Copynumber: 5.3 Consensus size: 473
2971798 ACAAATATTC
* * *
2971808 ATAGTCATACTAATCTCCATTTATTTCATGATTAGGCATCATAAACATAGTCTTCTCATAAGCAT
1 ATAGTCATACTAATCCCCATTT-TTT-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGCAT
* ** *
2971873 ACACGATATTGACACTTCCGTTTCACATGAAAGGCTTTT-TTCCCACCAATTTTTGAAAAGTCTA
64 ACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTTCTTCCCACCAATTTTTGAAAAGTCTA
* * *
2971937 GGTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTTAACATCTTCATTCATTTTGGGATTACG
129 AGTTCGTTCCTCAAATGAGACAAA-TTGGATTCTAG-TAACATCTTCATTCATTTTGCGATTAGG
* *
2972002 CACTATAAA-GACAATCTCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCAAGGAAATC
192 CACTATAAACG-CAATCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATC
* *
2972066 GTTTCTTGGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAAAATAA-CTGTTGATTC
256 GTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTT-AAAAAAGATAAGC-GTTGATTC
* * * * *
2972130 TCGTGACAATCTCCACTCCTTTAAAGATTAGGAAGCAAGAACACATTTCCTTCCTTAGGATACAT
319 TCGTGACAATCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCCTTAGGATACAT
* * * * *
2972195 GACATTGATGCTTTGGTGTTGCAATAAAAACCTTTCTTTCTATCATTTTTGATAGAATCAAAGTT
384 GACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTT
*
2972260 CGTCACTTAAATAAGACAAACATGA
449 TGTCACTTAAATAAGACAAACATGA
* * * * * *
2972285 AAACTCCTACTAATCCCCATTCTTCTTAGGATTAGGCACCATAAGCATAGTTTTCTCATAAGAAT
1 ATAGTCATACTAATCCCCATT-TT-TTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGCAT
** * * * * * *
2972350 GTATGATGTTGATGCTTTGGCTTCACAAGAAAGACTTTTCTTCTCC-CAAATTTTTGAAAAGTCT
64 ACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTTCTTC-CCACCAATTTTTGAAAAGTCT
* ** * * *
2972414 AAGTTCGTACCTTTAATGAGACAAATATGGATTCTAGTAATGATCTTCATCCGTTTTGCGATTAG
128 AAGTTCGTTCCTCAAATGAGACAAAT-TGGATTCTAGTAA-CATCTTCATTCATTTTGCGATTAG
* * * *
2972479 GCACTGTAAACGCATTCCCCTCATTAGGATAAATGATATTAATGATTTTCTCTAGCATGGAAATC
191 GCACTATAAACGCAATCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATC
* * * * * * * *
2972544 TTTTCTTTACTCTATTTTCCTTAAAATCAAACTTCATCCCTTGAAAAAGATAAGCCTCGATTCTC
256 GTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCGTTGATTCTC
* * * * * *
2972609 GTGATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGGACACATTCCCTTCGTTAGGAAACTTGA
321 GTGACAATCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCCTTAGGATACATGA
** * * * *
2972674 CATTGATGCTTTGGTGTCACAATAAAGGCTTTTCTTTCAACCATTGTTGATA-AGCTCAAAGTTT
386 CATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCAACCGTTTTTGATAGA-ATCAAAGTTT
* * **
2972738 GTCTCTTAAATAAGACAAATATTC
450 GTCACTTAAATAAGACAAACATGA
* *
2972762 ATAGTCATACTAATCTCCATTTATTTCAGGATTAGGCATCATAAACATAGTCTTCTCATAAGCAT
1 ATAGTCATACTAATCCCCATTT-TTT-AGGATTAGGCACCATAAACATAGTCTTCTCATAAGCAT
* * *
2972827 ACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACTAATTTTTGAAATGTCTA
64 ACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTTCTTCCCACCAATTTTTGAAAAGTCTA
* * *
2972891 AGTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTTAACATCTTCATTCATTTTGGGACTACG
129 AGTTCGTTCCTCAAATGAGACAAA-TTGGATTCTAG-TAACATCTTCATTCATTTTGCGATTAGG
* * *
2972956 CACTATAAA-GACAATCTCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCAAGGTAATC
192 CACTATAAACG-CAATCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATC
**
2973020 GTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAGACGAGCGTTGATTCTC
256 GTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCGTTGATTCTC
* * * * * *
2973085 ATGACAATCTCCACTTTTTTCAAGATTTGGAACCAAGAACACTTTCCTTTCCTCAGGATACATGA
321 GTGACAATCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCCTTAGGATACATGA
* * *
2973150 CATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAATTTG
386 CATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTG
2973215 TCACTTAAATAAGACAAACATGA
451 TCACTTAAATAAGACAAACATGA
* * * *
2973238 ATAGTCATACTATTCCCCATTCTTTTTAGTATTAGGCACCATAAACATAGTTTTCTCATAAGGAT
1 ATAGTCATACTAATCCCCA-T-TTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGCAT
** * * * * * ** *
2973303 GTATGATGTTGATGCTTTGGTTTCGCAAGAAAGGCTTTCCCCCCCCCCAATTTTTGAAAAGTCTA
64 ACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTTCTTCCCACCAATTTTTGAAAAGTCTA
* * * * * * * * *
2973368 GGTTCATGCATCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCTTTTTGCAATTAGA
129 AGTTCGTTCCTCAAATGAGACAAA-TTGGATTCTAGTAA-CATCTTCATTCATTTTGCGATTAGG
* * * * * * *
2973433 CACTGTAAACGCATTCCCCTCATTAGGATAAATGATATTGCTGATTTTCTCTAGGATGAAAATCT
192 CACTATAAACGCAATCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATCG
* * * * * *
2973498 TTTTTTTACCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAACGATAAGCCTTGATTC-CT
257 TTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCGTTGATTCTC-
* ** * * * * *
2973562 GTGACAATCTCCACTCTTTTCAAAATTGGGAACCAAGAACGTATTCCTTTCATTAAGAAACTTGA
321 GTGACAATCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCCTTAGGATACATGA
* * * *
2973627 AATTGGTGATTTGGTGTTGCAAT-AAAGTCTTTTCTTTCAACCGTTATTGATAGAATCAAAGTTT
386 CATTGATGCTTTGGTGTTGCAATAAAAG-CTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTT
* * * * * *
2973691 ATCTCTCAAATAAAACAAATATTA
450 GTCACTTAAATAAGACAAACATGA
*
2973715 ATAGTCATACTAATCCCCGTTATTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGCATA
1 ATAGTCATACTAATCCCCATT-TTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGCATA
* ** *
2973780 CACGATATTAACGCTTTGGTTTTGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGATAAGTCTAA
65 CACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTTCTTCCCACCAATTTTTGAAAAGTCTAA
* * * **
2973844 GTTCGTTCCCCAAATGAGAC-------ATTCTAGTAAAGATCATCATTCATTTTGTAATTAGGCA
130 GTTCGTTCCTCAAATGAGACAAATTGGATTCTAGT-AACATCTTCATTCATTTTGCGATTAGGCA
* *
2973902 CTATAAACACAATCCCCTTATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATCGTT
194 CTATAAACGCAATCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATCGTT
* * * * * *
2973967 TCTTTGCCTTATTTTGCTTAAAATCGATGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCATG
259 TCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCGTTGATTCTCGTG
** * * * * *
2974032 GTAGTTTCCTCTCTTTTCAAGATTGGGAACCAAGAACGCATTCCCTTCCTTAGGATACGTGACAT
324 ACAATCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCCTTAGGATACATGACAT
* * * * * * *
2974097 TGAAGTTTTGGTGTCGCAATAAATGCTTTTCTTGCCACCGTTTTTGATAGAATCAAAGTTTGCCA
389 TGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCA
*
2974162 -TTGAAATAAGAGAAACATGA
454 CTT-AAATAAGACAAACATGA
* * * * * * *
2974182 ATAGTTACACTAATCCCCATTTTTTTTGGGGTTAGGCACCGTAAACATAGTCTTCTCATAAGGAG
1 ATAGTCATACTAATCCCCA--TTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGCAT
** * * * *
2974247 GTATGATGTTAACGCTTTGGTTTCACAAGAAAGGCTTTTCTTCCTC-CCAATTTTTGAAAAATCT
64 ACACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTTCTTCC-CACCAATTTTTGAAAAGTCT
2974311 AAGTTCGTT
128 AAGTTCGTT
2974320 TTGCGATTAG
Statistics
Matches: 1698, Mismatches: 305, Indels: 72
0.82 0.15 0.03
Matches are distributed among these distances:
466 1 0.00
467 268 0.16
468 72 0.04
469 35 0.02
470 1 0.00
475 44 0.03
476 470 0.28
477 634 0.37
478 170 0.10
479 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (473 bp):
ATAGTCATACTAATCCCCATTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGCATAC
ACGATATTGACGCTTTGGTTTCACAAGAAAGGCTTTTCTTCCCACCAATTTTTGAAAAGTCTAAG
TTCGTTCCTCAAATGAGACAAATTGGATTCTAGTAACATCTTCATTCATTTTGCGATTAGGCACT
ATAAACGCAATCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTC
TTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCGTTGATTCTCGTGAC
AATCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCCTTAGGATACATGACATTG
ATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCACT
TAAATAAGACAAACATGA
Found at i:2973652 original size:953 final size:950
Alignment explanation
Indices: 2971794--2974316 Score: 3614
Period size: 953 Copynumber: 2.7 Consensus size: 950
2971784 CCTTTGTCAC
*
2971794 ATAAACAAATATTCATAGTCATACTAATCTCCATTTATTTCATGATTAGGCATCATAAACATAGT
1 ATAAACAAATATTCATAGTCATACTAATCTCCATTTATTTCAGGATTAGGCATCATAAACATAGT
* ** * *
2971859 CTTCTCATAAGCATACACGATATTGACACTTCCGTTTCACATGAAAGGCTTTTTTCCCACCAATT
66 CTTCTCATAAGCATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATT
*
2971924 TTTGAAAAGTCTAGGTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTTAACATCTTCATTCA
131 TTTG-AAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTTAACATCTTCATTCA
2971989 TTTTGGGATTACGCACTATAAAGACAATCTCCTCATTAGGATAAAAGATATTGATGATTTTCTCT
195 TTTTGGGATTACGCACTATAAAGACAATCTCCTCATTAGGATAAAAGATATTGATGATTTTCTCT
* *
2972054 AGCAAGGAAATCGTTTCTTGGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAA-AAAT
260 AGCAAGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAGACA-
* * * * *
2972118 AACTGTTGATTCTCGTGACAATCTCCACTCCTTTAAAGATTAGGAAGCAAGAACACATTTCCTTC
324 AGC-GTTGATTCTCATGACAATCTCCACTCTTTTCAAGATTAGGAACCAAGAACAC-TTTCCTTC
* * * *
2972183 CTTAGGATACATGACATTGATGCTTTGGTGTTGCAATAAAAACCTTTCTTTCTATCATTTTTGAT
387 CTTAGGATACATGACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCGTTTTTGAT
* * * * *
2972248 AGAATCAAAGTTCGTCACTTAAATAAGACAAACATGAAAACTCCTACTAATCCCCATTCTTCTTA
452 AGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTA
* * *
2972313 GGATTAGGCACCATAAGCATAGTTTTCTCATAAGAATGTATGATGTTGATGCTTTGGCTTCACAA
517 GGATTAGGCACCATAAACATAGTTTTCTCATAAGGATGTATGATGTTGATGCTTTGGTTTCACAA
* * * * * ** *
2972378 GAAAGACTTTTCTTCTCCCAAATTTTTGAAAAGTCTAAGTTCGTACCTTTAATGAGACAAATATG
582 GAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCATACATCAAATGAGACAAACATG
* * *
2972443 GATTCTAGTAATGATCTTCATCCGTTTTGCGATTAGGCACTGTAAACGCATTCCCCTCATTAGGA
647 GATTCTAGTAATAATCTTCATCCGTTTTGCAATTAGACACTGTAAACGCATTCCCCTCATTAGGA
* *
2972508 TAAATGATATTAATGATTTTCTCTAGCATGGAAATCTTTTCTTTACTCTATTTTCCTTAAAATCA
712 TAAATGATATTAATGATTTTCTCTAGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCA
* * *
2972573 AACTTCATCCCTTGAAAAAGATAAGCCTCGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGG
777 AACTTCATCCCTTGAAAAAGATAAGCCTCGATTCTCGTGACAATCTCCACTCTTTTCAAAATTGG
* * * * *
2972638 GAACCAAGGACACATTCCCTTCGTTAGGAAACTTGACATTGATGCTTTGGTGTCACAATAAAGGC
842 GAACCAAGAACACATTCCCTTCATTAAGAAACTTGAAATTGATGATTTGGTGTCACAATAAAGGC
* * * *
2972703 TTTTCTTTCAACCATTGTTGATA-AGCTCAAAGTTTGTCTCTTAA
907 TTTTCTTTCAACCATTATTGATAGA-ATCAAAGTTTATCTCTCAA
2972747 ATAAGACAAATATTCATAGTCATACTAATCTCCATTTATTTCAGGATTAGGCATCATAAACATAG
1 ATAA-ACAAATATTCATAGTCATACTAATCTCCATTTATTTCAGGATTAGGCATCATAAACATAG
*
2972812 TCTTCTCATAAGCATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACTAAT
65 TCTTCTCATAAGCATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAAT
2972877 TTTTGAAATGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTTAACATCTTCATTC
130 TTTTGAAA-GTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTTAACATCTTCATTC
*
2972942 ATTTTGGGACTACGCACTATAAAGACAATCTCCTCATTAGGATAAAAGATATTGATGATTTTCTC
194 ATTTTGGGATTACGCACTATAAAGACAATCTCCTCATTAGGATAAAAGATATTGATGATTTTCTC
* *
2973007 TAGCAAGGTAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAGACG
259 TAGCAAGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAGACA
* *
2973072 AGCGTTGATTCTCATGACAATCTCCACTTTTTTCAAGATTTGGAACCAAGAACACTTTCCTTTCC
324 AGCGTTGATTCTCATGACAATCTCCACTCTTTTCAAGATTAGGAACCAAGAACACTTTCC-TTCC
*
2973137 TCAGGATACATGACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATA
388 TTAGGATACATGACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATA
* *
2973202 GAATCAAAATTTGTCACTTAAATAAGACAAACATGAATAGTCATACTATTCCCCATTCTTTTTAG
453 GAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAG
* *
2973267 TATTAGGCACCATAAACATAGTTTTCTCATAAGGATGTATGATGTTGATGCTTTGGTTTCGCAAG
518 GATTAGGCACCATAAACATAGTTTTCTCATAAGGATGTATGATGTTGATGCTTTGGTTTCACAAG
* ** * *
2973332 AAAGGCTTTCCCCCCCCCCAATTTTTGAAAAGTCTAGGTTCATGCATCAAATGAGACAAACATGG
583 AAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCATACATCAAATGAGACAAACATGG
* *
2973397 ATTCTAGTAATAATCTTCATTCTTTTTGCAATTAGACACTGTAAACGCATTCCCCTCATTAGGAT
648 ATTCTAGTAATAATCTTCATCCGTTTTGCAATTAGACACTGTAAACGCATTCCCCTCATTAGGAT
** * *
2973462 AAATGATATTGCTGATTTTCTCTAGGATGAAAATCTTTTTTTTACCCTATTTTCCTTAAAATCAA
713 AAATGATATTAATGATTTTCTCTAGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAA
* * *
2973527 AGTTCATCCCTTGAAAACGATAAGCCTTGATTC-CTGTGACAATCTCCACTCTTTTCAAAATTGG
778 ACTTCATCCCTTGAAAAAGATAAGCCTCGATTCTC-GTGACAATCTCCACTCTTTTCAAAATTGG
** * * ** *
2973591 GAACCAAGAACGTATTCCTTTCATTAAGAAACTTGAAATTGGTGATTTGGTGTTGCAATAAAGTC
842 GAACCAAGAACACATTCCCTTCATTAAGAAACTTGAAATTGATGATTTGGTGTCACAATAAAGGC
*
2973656 TTTTCTTTCAACCGTTATTGATAGAATCAAAGTTTATCTCTCAA
907 TTTTCTTTCAACCATTATTGATAGAATCAAAGTTTATCTCTCAA
* ** * *
2973700 ATAAAACAAATATTAATAGTCATACTAATC-CCCGTTATTTTAGGATTAGGCACCATAAACATAG
1 AT-AAACAAATATTCATAGTCATACTAATCTCCATTTATTTCAGGATTAGGCATCATAAACATAG
* * *
2973764 TCTTCTCATAAGCATACACGATATTAACGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCACCAAT
65 TCTTCTCATAAGCATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAAT
* * * *
2973829 TTTTGATAAGTCTAAGTTCGTTCCCCAAATGAG----AC----ATTCTAGTAAAGATCATCATTC
130 TTTTGA-AAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTTAACATCTTCATTC
** * * * *
2973886 ATTTTGTAATTAGGCACTATAAACACAATCCCCTTATTAGGATAAAAGATATTGATGATTTTCTC
194 ATTTTGGGATTACGCACTATAAAGACAATCTCCTCATTAGGATAAAAGATATTGATGATTTTCTC
* * * *
2973951 TAGCATGGAAATCGTTTCTTTGCCTTATTTTGCTTAAAATCGATGTTCATCCCTTAAAAAAGACA
259 TAGCAAGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAGACA
* ** * * * * * *
2974016 AGCGTCGATTCTCATGGTAGTTTCCTCTCTTTTCAAGATTGGGAACCAAGAACGCATTCCCTTCC
324 AGCGTTGATTCTCATGACAATCTCCACTCTTTTCAAGATTAGGAACCAAGAACAC-TTTCCTTCC
* * * * * * *
2974081 TTAGGATACGTGACATTGAAGTTTTGGTGTCGCAATAAATGCTTTTCTTGCCACCGTTTTTGATA
388 TTAGGATACATGACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATA
* * * * * *
2974146 GAATCAAAGTTTGCCA-TTGAAATAAGAGAAACATGAATAGTTACACTAATCCCCATTTTTTTTG
453 GAATCAAAGTTTGTCACTT-AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTA
* * * * * *
2974210 GGGTTAGGCACCGTAAACATAGTCTTCTCATAAGGAGGTATGATGTTAACGCTTTGGTTTCACAA
517 GGATTAGGCACCATAAACATAGTTTTCTCATAAGGATGTATGATGTTGATGCTTTGGTTTCACAA
* *
2974275 GAAAGGCTTTTCTTCCTCCCAATTTTTGAAAAATCTAAGTTC
582 GAAAGGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTC
2974317 GTTTTGCGAT
Statistics
Matches: 1410, Mismatches: 150, Indels: 29
0.89 0.09 0.02
Matches are distributed among these distances:
943 2 0.00
944 389 0.28
945 4 0.00
948 2 0.00
952 126 0.09
953 580 0.41
954 306 0.22
955 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (950 bp):
ATAAACAAATATTCATAGTCATACTAATCTCCATTTATTTCAGGATTAGGCATCATAAACATAGT
CTTCTCATAAGCATACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATT
TTTGAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTCTAGTTAACATCTTCATTCAT
TTTGGGATTACGCACTATAAAGACAATCTCCTCATTAGGATAAAAGATATTGATGATTTTCTCTA
GCAAGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAG
CGTTGATTCTCATGACAATCTCCACTCTTTTCAAGATTAGGAACCAAGAACACTTTCCTTCCTTA
GGATACATGACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATAGAA
TCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGAT
TAGGCACCATAAACATAGTTTTCTCATAAGGATGTATGATGTTGATGCTTTGGTTTCACAAGAAA
GGCTTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCATACATCAAATGAGACAAACATGGATT
CTAGTAATAATCTTCATCCGTTTTGCAATTAGACACTGTAAACGCATTCCCCTCATTAGGATAAA
TGATATTAATGATTTTCTCTAGCATGAAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAAACT
TCATCCCTTGAAAAAGATAAGCCTCGATTCTCGTGACAATCTCCACTCTTTTCAAAATTGGGAAC
CAAGAACACATTCCCTTCATTAAGAAACTTGAAATTGATGATTTGGTGTCACAATAAAGGCTTTT
CTTTCAACCATTATTGATAGAATCAAAGTTTATCTCTCAA
Found at i:2975009 original size:33 final size:32
Alignment explanation
Indices: 2974972--2975069 Score: 126
Period size: 33 Copynumber: 3.0 Consensus size: 32
2974962 TACCACTGTT
*
2974972 TGTATCGATACGTGGCACATTGTATCGATACAA
1 TGTATCGATACATGG-ACATTGTATCGATACAA
* *
2975005 TGTATCGATACATGGTACATTGTATTGATACAG
1 TGTATCGATACATGG-ACATTGTATCGATACAA
2975038 TGTATCGATACATGATGA-ATTGTATCGATACA
1 TGTATCGATACATG--GACATTGTATCGATACA
2975070 TTGCTTCAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
33 56 0.97
34 1 0.02
35 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATGGACATTGTATCGATACAA
Found at i:2975010 original size:13 final size:13
Alignment explanation
Indices: 2974992--2975016 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2974982 CGTGGCACAT
2974992 TGTATCGATACAA
1 TGTATCGATACAA
2975005 TGTATCGATACA
1 TGTATCGATACA
2975017 TGGTACATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2981203 original size:20 final size:21
Alignment explanation
Indices: 2981160--2981212 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 21
2981150 GCCAATGACT
**
2981160 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATTCTGGTCA
2981181 TGTATCGATACATT-TGGTCA
1 TGTATCGATACATTCTGGTCA
2981201 TGTATCGATACA
1 TGTATCGATACA
2981213 ATGTATCGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATTCTGGTCA
Found at i:2981218 original size:13 final size:13
Alignment explanation
Indices: 2981200--2981228 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
2981190 ACATTTGGTC
2981200 ATGTATCGATACA
1 ATGTATCGATACA
2981213 ATGTATCGATACA
1 ATGTATCGATACA
2981226 ATG
1 ATG
2981229 CAATCTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2981239 original size:20 final size:20
Alignment explanation
Indices: 2981214--2981264 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
2981204 ATCGATACAA
*
2981214 TGTATCGATACAATGCAATC
1 TGTATCGATACAATGAAATC
* * *
2981234 TGTATCGATACATTTAAATG
1 TGTATCGATACAATGAAATC
2981254 TGTATCGATAC
1 TGTATCGATAC
2981265 TTTTCAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAATGAAATC
Found at i:2983690 original size:13 final size:13
Alignment explanation
Indices: 2983672--2983697 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2983662 ATAATCCCCT
2983672 TGTATCGATACAG
1 TGTATCGATACAG
2983685 TGTATCGATACAG
1 TGTATCGATACAG
2983698 AGAATACTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:2983912 original size:8 final size:8
Alignment explanation
Indices: 2983899--2983924 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
2983889 AACAACATTC
2983899 ATCACAAA
1 ATCACAAA
2983907 ATCACAAA
1 ATCACAAA
2983915 ATCACAAA
1 ATCACAAA
2983923 AT
1 AT
2983925 TTAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (8 bp):
ATCACAAA
Found at i:2984794 original size:45 final size:45
Alignment explanation
Indices: 2984730--2984821 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
2984720 GATATAACAA
2984730 TGAGCCAATCATAGACCTATAAAGTTTAGTGTCAATAAAATTACC
1 TGAGCCAATCATAGACCTATAAAGTTTAGTGTCAATAAAATTACC
2984775 TGAGCCAATCATAGACCTATAAAGTTTAGTGTCAATAAAATTACC
1 TGAGCCAATCATAGACCTATAAAGTTTAGTGTCAATAAAATTACC
2984820 TG
1 TG
2984822 CTTCATCTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.29
Consensus pattern (45 bp):
TGAGCCAATCATAGACCTATAAAGTTTAGTGTCAATAAAATTACC
Found at i:2988311 original size:12 final size:12
Alignment explanation
Indices: 2988296--2988330 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
2988286 TCTGAGTCAC
*
2988296 CATCATCATCAA
1 CATCTTCATCAA
2988308 CATCTTCATCAA
1 CATCTTCATCAA
2988320 CATCTTCATCA
1 CATCTTCATCA
2988331 TCTTCATCGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (12 bp):
CATCTTCATCAA
Found at i:2990063 original size:20 final size:20
Alignment explanation
Indices: 2990020--2990075 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
2990010 GCCAATGACT
**
2990020 TGTATCGATACATTCTTTTCA
1 TGTATCGATACATT-TGGTCA
2990041 TGTATCGATACATTTGGTCA
1 TGTATCGATACATTTGGTCA
2990061 TGTATCGATACATTT
1 TGTATCGATACATTT
2990076 AAATGTGTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
20 19 0.58
21 14 0.42
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (20 bp):
TGTATCGATACATTTGGTCA
Found at i:2992001 original size:33 final size:33
Alignment explanation
Indices: 2991964--2992030 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
2991954 TGAGAATTGA
* *
2991964 TCACTTCACTTTTGCAAG-ACATGAATGAGCACT
1 TCACTTCACTCTCGC-AGCACATGAATGAGCACT
*
2991997 TCACTTCACTCTCGCAGCACATGGATGAGCACT
1 TCACTTCACTCTCGCAGCACATGAATGAGCACT
2992030 T
1 T
2992031 TAGTGCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 28 0.93
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (33 bp):
TCACTTCACTCTCGCAGCACATGAATGAGCACT
Found at i:2995056 original size:476 final size:475
Alignment explanation
Indices: 2993836--3005091 Score: 9622
Period size: 476 Copynumber: 23.6 Consensus size: 475
2993826 CCTTGAGCTT
* * * * * *
2993836 TCAAAGTTTGTCTCTCAAATAAGACAAATATTAATAGTCATACCAATCCCTATTTATTTCAGGAT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* * * * *
2993901 TAAGCACCATAAACATAGTCTTCTCATAAGCAAACACGATATTGACACTTTGGTTTCGCAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
* * ** * *
2993966 GGCTTTCTTCCCACCAATTTTTGATAAGTCTAAGTTTGTTTCTCAAATAAGACAAACTTGGATTC
131 GGCTTTCTTCCC-CCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * * **
2994031 TAGTAAAGATCTTCATTCAATTTGTGAATAAGGCACTATAAACACAATCTCCTTTTTAGGATAAA
195 TAGTAAAGATCTTCATTCATTTTGTG-ATTAGGCACTATAAACACATTCCCCTCATTAGGATAAA
* *
2994096 AGATATTGATGATTTTCTCTAGCATGGAAATTGTTTCTTTACCCTATTTTGCTTAAAATCAAAGT
259 AGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGT
** * * * * *
2994161 TCAAACCTTGAAAAAGATAAGCGTTGATTCTCGTGATATTCTCCTCTCTTTTCAAGATTAGGAAC
324 TCATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAAC
* * * **
2994226 CAAGAACGCATTCCCTTCCTTAGGATACGTGACATTGATGTTTTGGTGTCATAATAAAAGCTTTT
389 CAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTT
* ** * **
2994291 CTTTCCATTGTTTTCGACGGAA
454 CTTTCAACCGTTTTTGATAGAA
* * * * *
2994313 TTAAAGTTTGTCACTTAAAAAAGACAAACATGAATAGTCATACTAATCCCTACTCT-TTTTAGGA
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCA-TTTATTTTAGGA
*
2994377 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTTGCAAGAA
65 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
* * * *
2994442 AGGCTTTTCGTCCCCCCAATTTTTGAAAAGTCTAATTTAGTGCCTCAAATGAGTCAAACATGGAT
130 AGGC-TTTC-TTCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * * * *
2994507 TATAGTAATGATCTTCATTCATTTAGTGGTTAGGCACTATAAAAACATTCCCCTCATTAGGATAA
193 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAA
*
2994572 AAGATATTGATGATTTTCTCTAGCATGGAACTCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAG
258 AAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAG
* * *
2994637 TTCATCCCTTGAAAAAGGCAAGCGTCGATTTTCGTGGCAGTCTCCTCTCTTTTCAAGATTGGGAA
323 TTCATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAA
** * * * * *
2994702 CCAAGAACGTATTCTCTTCCTTAGAATACATAACATTGACGCTTTGGTGTCACAATAAAAGCTTT
388 CCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTT
*
2994767 TCTTT-ACACCGTTTTTGA-CGAAA
453 TCTTTCA-ACCGTTTTTGATAG-AA
* * * * * *
2994790 TCAAAGTTTTTCACTTAAACAAGACAAGCA-GAACAGTCATACTAATCCCCATTTTTTTTAGGAT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* * **
2994854 TAGGCACCACAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCACAACTAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
*
2994919 GGCTTTTCTTCTCCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT
131 GGC-TTTCTTC-CCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT
* * * *
2994984 CTAGTAATGATCTTCAGTT-ATTTTGTGATTAGGCATTGTAATCACATTCCCCTCATTAGGATAA
194 CTAGTAAAGATCTTCA-TTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAA
* * * *
2995048 ATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTTTTTGCCCTATTTTCCTTAAAATCAAAG
258 AAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAG
* * * ** * * * *
2995113 TTCATCCCTTGAAAATGACAAGCCTCAATTCTCGTGATTGTATCCACTCTTTCCAAGACTGGGAA
323 TTCATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAA
* * *
2995178 CTAAGAACACATT-CCTTCATTAGGATACATGACATTGATG-TGTTGGTGTCGCAATAAAGGCTT
388 CCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCT-TTGGTGTCGCAATAAAAGCTT
*
2995241 TTCTTTCAACCGTTATTGATAGAA
452 TTCTTTCAACCGTTTTTGATAGAA
* * * * * * *
2995265 TCAAAGTATGTCTCTCAAATAAGGCAAACATTACTAGTCATACCAATCCCCATTTATTTCAGGAT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* * * * * *
2995330 TAGGCACCATAAACATAGTGTTCTCGTAAGGATATATGATATTGATGCTTTGGTTTCACAATAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
* * * *
2995395 GGCTTTC-TCCCACCAATTTTTCAAAAGTCTAAGTTCATTCCTCAAATGAGACAAACTTGGATTC
131 GGCTTTCTTCCC-CCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * * ** * * * *
2995459 TAGTAAACATCTTCCTTCATTTTGGGATAAGGCAAAATAAACGCAATCTCCTTATTAGGATAAAA
195 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAAA
* ** * *
2995524 GATATTGATCATTTTCTCTAGCATGGAAAAGGTTTCTTTGCCCTAGTTTACTTAAAATCAAAGTT
260 GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTT
* * * * *
2995589 CATCCCTTGGAAAATATAAGCGTCGATTCTCGTGACAGTCTCCTCTTTTTTCAAGATTAGGAACC
325 CATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAACC
* ** * * * *
2995654 AGGAACACATTTTCTTCCTTAAGATACATGACATTGACGGTTTGGTGTCGTAATAAAAGCTTTTC
390 AAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTC
* *
2995719 TTTCCACTGTTTTTGATAGAA
455 TTTCAACCGTTTTTGATAGAA
* * *
2995740 TCAAAGTTTTTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCT-TGTTACGA
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATT-TATTTTAGGA
* * * * *
2995804 TTAGGCACCATAAATATAGTCTTCTCATAGGGATATACGATATTGATGCTTTGGTTTTGCAACAA
65 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
* * *
2995869 AGGCTTTTCTTCCACCTAATTTTTTAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGAT
130 AGGC-TTTCTTCC-CCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * * * *
2995934 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATTGTAAACACATTCCCCTAAATAGGATAA
193 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAA
* * * * * * * *
2995999 ATGATATTGATGCTTTTCTCTTGCATGGTAATCTTTTTTTTGCCCTATTTTCCATAAAATCAAAG
258 AAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAG
* * * * * *
2996064 TTCATCTCC-TAAAAAATACCAGCCTCGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGGGA
323 TTCATC-CCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGA
* ** * *
2996128 ACCAAGAACACATTCCCTTCATTAGGATAGTTGACATTGATGCTTTAGTGTCGCAATAAAAACTT
387 ACCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTT
* * * *
2996193 TTTTTTCAACCATTATTGATAGAT
452 TTCTTTCAACCGTTTTTGATAGAA
* * * * * * *
2996217 TCAAAATTTGTCTCTCAAATAAAACAAACATTAACAATCATACTAATCTCCATTTATTTTAGGAT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* * * * *
2996282 TGGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTCGCAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
* * *
2996347 GGCTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTC
131 GGCTTTCTT-CCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * ** *
2996412 TATTAAAGATCTTCATTCATTTTGTGACTAGGCACTATAAACACAATCTTCTCATTTGGATAAAA
195 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAAA
* * * *
2996477 GATATTGATGAATTTCTCTAGCATGGAAATCGTATCTTTGCCTTATTTTGCTTCAAATCAAAGTT
260 GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTT
* * *
2996542 CATCCCTTGAAAAAGACAAGCGTCAATTCTCGTGACAATCTCCTCTCTTTTTGCACGATTGGGAA
325 CATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTC-TTTT-CAAGATTGGGAA
* * * * *
2996607 CCAAGAATACGTTCCCTCCCTTAGGATACATGACATTGATGCATTGGTGTCGCAATAAAGGCTTT
388 CCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTT
* *
2996672 TCTTTCAACCATTATTGATAGAA
453 TCTTTCAACCGTTTTTGATAGAA
* * * * * * *
2996695 TCAAAGTGTGTCTCTCAAATAAGACAAACATTACTAGTCATACTAATCCCCATTTATTTCAAGAA
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* * * * * * * *
2996760 TATGCACCATAATCATAGTCTTCTCGTAGGGATAGACGATATTGATGCTTTGGTTTCACAATAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
* * * * *
2996825 GGCTTTC-TCCCACCAATTTTTAAAAAGTCTAAGTTCATTCCTCAAATGAAACAAACTTGGATTC
131 GGCTTTCTTCCC-CCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * * * *
2996889 TAGTAAACATCTTCCTTCATTTTGGGATTAGGCAC-ATTAAACACAATCTCCTTATTAGGATAAA
195 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTA-TAAACACATTCCCCTCATTAGGATAAA
** *
2996953 AGATATTGATGATTTTCTCTAGCATGGAAAAGGTTTCTTTGCCCTAGTTTGCTTAAAATCAAAGT
259 AGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGT
* * * * * * * *
2997018 TCATCCCTTGGAAAATATAAGCGTCGATTCTCATGGCAGTCTACTCTCTTTTCAAGATTAGAAAC
324 TCATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAAC
* * * *
2997083 CAAGAACACATTCCCTTCCTTAAGG-TAAATGACATTGACGGTTTAGTGTCGCAATAAAAGCTTT
389 CAAGAACACATTCCCTTCCTT-AGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTT
* * *
2997147 TCTTTCCATCATTTTTGATAGAA
453 TCTTTCAACCGTTTTTGATAGAA
* * * * *
2997170 TCAAAATCTGTCACATAAATAAGACAAACATGAATAGTCATACTATTCCCCATTCT-TTTTAGGA
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATT-TATTTTAGGA
* * * * *
2997234 TTAGGCACCATAAATATAGTCTTCTCATAAGGATATAGGATATTGACACTTTGGTTTTGCAAAAA
65 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
* *
2997299 AGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGAT
130 AGGC-TTTCTT-CCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
* * * * *
2997364 TCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATTGTAAACACATTCACCTCAATAGGATAA
193 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAA
* * * * *
2997429 ATGATATTGATGATTTTTTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAATCAAAG
258 AAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAG
* * * * * * * *
2997494 TTCATCTCC-TAAAAAATACCAGCCTCGATTCTCATGATAGTCTCCACACTTTTCAAGATTGGGA
323 TTCATC-CCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGA
* * * *
2997558 ACTAAGAACACATTCCCTTCATTAGGATAGATGACATTGATGCTTTGGTGTCGCAATAAAAACTT
387 ACCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTT
* * *
2997623 TTCTTTCAACCATTATTGATAGAT
452 TTCTTTCAACCGTTTTTGATAGAA
* * * * * ** *
2997647 TCAAAGTTTGTCTCTCAAATAAGACAAGCATTAACAGTCATACTAATCTCCATTTATTGCAAGAT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* * * * *
2997712 TAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTCACAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
* * * *
2997777 GGCTTTCTTCCTCCCAATTTTTTAAAAGTCTAAGTTCGTTCCTCAAATAAGACAAACTTGGATTC
131 GGCTTTCTTCC-CCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * * * ** * *
2997842 TAATAAAGATCTTCATTCATTTTGTTACTAGGCACTATAAAAACAATCTTCTCATTTGGATAAAT
195 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAAA
* * *
2997907 GATATTGATGATTTTCTCTTGCATGGAAATCGTTTCTTTGCCTTATTTTGCTTCAAATCAAAGTT
260 GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTT
* *
2997972 CATCCCTTGAAAAAGACAAGCGTCAATTCTCGTGACAATCTCCTCTCTTTTTTCAAGATTGGGAA
325 CATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTC--TTTTCAAGATTGGGAA
* *
2998037 CCAAGAATACATTCCCTCCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTT
388 CCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTT
*
2998102 TCTTTCAATCGTTTTTGATAGAA
453 TCTTTCAACCGTTTTTGATAGAA
* * ** *
2998125 TCAAAGTTTGCCACTTAAATAAGACAAACATGAATAGTCATACTAATCCTTATTCATTTTAGGAT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* * * *
2998190 TACGCACCATAAACATAGTCTTCTCAAAAAGATATATGATATTGACGCTTTGGTTTCGCAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
*
2998255 GGCTTTTCTTCCCCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATTAGACAAACATGGATT
131 GGC-TTTCTTCCCCC-AATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT
* * * * *
2998320 CTAGTAATGATCTTCATTCATTTTGTGATTAGGTACTGTAATCACATTCCCCTCATTAGAATAAA
194 CTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAA
* * * * *
2998385 TGATATTGATGATTTTCTCTAGCATGGAAATC-TTTTTTTTCCTTATTTTCCTTAAAATCAAAGT
259 AGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGT
* * * * * * ** * *
2998449 TCATCACTTGAAAAAAACAAGCCTCGATTCCCATGATAGTCTCGACTTTTTTCAAGATTGGAAAC
324 TCATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAAC
* * * * * *
2998514 CAAGAACATATTCCCTTCATTACGATACATGACATTGATGCATTGGTGTCGTAATAAAGGCTTTT
389 CAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTT
* *
2998579 CTTTCAACCATTATTGATAGAA
454 CTTTCAACCGTTTTTGATAGAA
* * * * * * *
2998601 TCAAAGTATGTCTCTCAAATAAGACAAACATTACTAGTCATACTAATCCCCATTTAGTTCAAGAT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* ** * * * * * * *
2998666 TATGCACCATAGGCACAGTCTTCTCGTAGGGATAGACGATATTGATGCTTTGGTTTCACAATAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
* * * *
2998731 GGCTTTC-TCCCACCAATTTTTAAAAAGTCTAAGTTCATTCCTCAAATGAGACAAACTTGGATTC
131 GGCTTTCTTCCC-CCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * * * * *
2998795 TAGTAAACATCTTCCTTCATTTTGGGATTAGGCACAATAAACACAATCTCCTTATTAGGATAAAA
195 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAAA
** *
2998860 GATATTGATGATTTTCTCTAGCATGGAAAAGGTTTCTTTGCCCTAGTTTGCTTAAAATCAAAGTT
260 GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTT
* * * * * * *
2998925 CATCCCTTGGAAAATATAAGCGTCGATTCTCATGACAGTCTGCTCTCTTTCCAAGATTGGAAACC
325 CATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAACC
* * *
2998990 AAGAACACATTCCCTTCCTTAAGG-TACATGACATTGATGGTTTAGTGTAGCAATAAAAGCTTTT
390 AAGAACACATTCCCTTCCTT-AGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTT
* *
2999054 CTTTCCATCGTTTTTGATAGAA
454 CTTTCAACCGTTTTTGATAGAA
* * * *
2999076 TCAAAGTCTGTCAGTTAAATAAGACAAACATGAATAGTCATACTAA-CCCCATTCT-TTTTGGGA
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATT-TATTTTAGGA
* * * * * *
2999139 TTAGGCACCAGAAATATAGTCTTCTCATAAGGATATAGGATATTGACACTTTGGTTTTGCAAAAA
65 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
*
2999204 AGGCTTTTCTTCACCCCAATTTTTTG-AAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGA
130 AGGC-TTTCTTC-CCCCAA-TTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
* * * * *
2999268 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATTGTAAACACATTCACCTCAATAGGATA
192 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATA
* * * * * * *
2999333 AATGATATTGATGTTTTTTTCGAGCATGGAAATCTTTTGTTTGCCCTATTTTCCTTAAAATCAAA
257 AAAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAA
* * * * * *
2999398 GTTCATCTCC-TAAAAAAGACCAGCCTCGATTCTCATGACAGTCTCCACACTTTTCAAGATTGGG
322 GTTCATC-CCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGG
* * *
2999462 AACCAAGAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAATAAAGGCT
386 AACCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCT
* *
2999527 TTTCTTTCAACCGTTATTGAT-GAT
451 TTTCTTTCAACCGTTTTTGATAGAA
* ** * * * *
2999551 TCAAAGTTTGTCTCTCGAATAAGACAAACATTAATAGTTATACTAATCCCTATTTATTTCAAGAT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* ** *
2999616 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGCTTTCGCAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
* * * *
2999681 GGCTTTGTTCACCCCAAATTTTT-AAAAGTCTAAGTTTGTTCCTCAAATGAGACAAACTTGGATT
131 GGCTTTCTTC-CCCC-AATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT
* * * * *
2999745 CTAGTAAACATCTTCAATCATTTTGTGACTAGGCACTATAAACACAGTCTCCTCATTAGGATAAA
194 CTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAA
*
2999810 AGATATTGATGATTTTCTCTAGCATGAAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGT
259 AGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGT
* * * * * * * *
2999875 TCATCCCTTGGAAAAGACAAGCGTCAATTCTCATGGCAATCACCTTTCTTTTTTGAAGATTGGGA
324 TCATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCC--TCTCTTTTCAAGATTGGGA
* * *
2999940 ACCAAGAACACATTCCCTCCCTTAGGATTCATGACATTGATGCTTTGGTGTCGCAATAAAAACTT
387 ACCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTT
* *
3000005 TTCTTTCCATCGTTTTTGATAGAA
452 TTCTTTCAACCGTTTTTGATAGAA
* ** *
3000029 TCTAAGTTTGTCACTTAAATAAGACAAACAAGAATAGTCACACTAATCCCCATTT-TTTTAGGAT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* * * * *
3000093 TCGGCACTATAAACATAGTCTTCTCAAAAGGATATACGATATTGACGTTTTGGTTTCACAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
*
3000158 GGCTTTTCTTCCCTTCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT
131 GGC-TTTCTTCCC-CCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT
* * * * *
3000223 CTAGTAATGATCTTCATCCATTTTGTGATTAGGCACTATAAACACGTTCCCCTTATTAAGATAAA
194 CTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAA
* * * *
3000288 TGATATTGATGATTTTTTCTAGTATGGAAATCTTTTCTTTGCCCTATTTT-CTTTAAAATCAAAG
259 AGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGC-TTAAAATCAAAG
* * * * * * *
3000352 TTCATCCCTTGAAAAAGACAGGCCTCGATTCCCGCGACAGTGTCCACTCTTTTCAAGATTGGAAA
323 TTCATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAA
* * * * *
3000417 CCATGAACACATTCCCTACATTAGGATACATGACATTGATGCTTTGGTGTTGCAAT-AAGGCTTT
388 CCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTT
*
3000481 TCTTTCAACCGTTATTGATAGAA
453 TCTTTCAACCGTTTTTGATAGAA
* * * * *
3000504 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTATTCCCTATTTATTTTAGGTT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* * * * * *
3000569 TAGGCTCCATAAACTTTGTCTTTTCATAAGGATACACGATATTGACGCTTTGGTTTTGCAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
* * * *
3000634 GGCTTTCTTCCCACCAATTTTTGATAAGTCTACGTTCGTTCCTCAAATGAGACAAACTTGGATTC
131 GGCTTTCTTCCC-CCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * *
3000699 TAGTAAAGATCTTCATTTATTTTGTGATTAGGCACTATAAACACAATCCTCTCATTAGGATAAAA
195 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAAA
* * * *
3000764 GATATTGATGTTTTTCTCTAACATGGTAATCGTTTCTTTGCCCTATTTTGCTCAAAATCAAAGTT
260 GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTT
* * * * *
3000829 CATTCCTTGAAAAAGACAAGCGTCGATTCTCATGATAGTTTCCTCTCTTTTCAAGATTGGGAACA
325 CATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAACC
* * * *
3000894 AAGAACACATTCCTTTCCTTAGGATACATGACTTTGATGCTTTGGTGCCACAATAAAAGCTTTTC
390 AAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTC
* *
3000959 TTTCCATCGTTTTTGATAGAA
455 TTTCAACCGTTTTTGATAGAA
* * * * * * *
3000980 TAAAAGTTTGTCACTTAAAAAAGACAAACATGAATAGTCATATTAATCCTCATTCT-TTTCAAGA
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATT-TATTTTAGGA
* * * * * **
3001044 TTATGCACCAT-TA-A-AG-----T--T-AGGATACATGATATTGATGCTTTAATTTCGCAAGAA
65 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
* * * * * *
3001098 AAGCTTTCTTCACCCATTTTTTGAAAAGTCTAAGATCGTGCTTCAAATAAGACAAACATGGATTC
130 AGGCTTTCTTCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * * *
3001163 TAGTAATA-ATATTCATTAATTTTGCGATTAGGCACTGTAAACACATTCCCCTTATTAGGATAAA
195 TAGTAA-AGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAA
* * * ** * * * **** **
3001227 TGATATTAACGA----GACAAACATGGATTCCAATAAAGATCTTCATTAATTTTATGATTAGGCA
259 AGATATTGATGATTTTCTCTAGCATGGA----AAT--CG-T-TTC-TT--TGCCCT-ATTTTGC-
* * * * * * **** * ** ***
3001288 CTATAAA-CACA-TTC-GCTCATTAGGATAAATGATATTAAT-GATTTTATC-TAGTATGGAAAC
311 TTA-AAATCAAAGTTCATC-CCTT--GA-AAAAGACAAGCGTCGA--TTCTCGT-G-ACAGTCTC
* * *** *** * * * * ** * * * **
3001348 CTTTTCTTTACCCTATT--TTTCTTAA-AATCAAAGTT-CATCCCTTAAAAAAGATAAGCATCAA
367 C-TCTCTTTTCAAGATTGGGAAC-CAAGAA-CACA-TTCCCTTCCTTAGGATACATGA-CATTGA
* * * *** * * ** *
3001409 T--TCTCGTG--ACAATCTCCA-C-ATT-TTTCAA--GATTGGGAACCAAGAA
427 TGCTTTGGTGTCGCAAT-AAAAGCTTTTCTTTCAACCGTTTTTG-A--TAGAA
* * * * ** ** * *** *
3001453 -CACA-TTCCCT-TCAC-TAGGATACATGACATTGATGCTTTGGT-GTCGCAATAA-AAGCTTTT
1 TCAAAGTT---TGTCACTTA-AATA-A-GACA---A-ACATTAATAGTCATACTAATCCCCATTT
* * ** ** * * * ** * * * * * * *
3001512 CTTTCCACCATTTTTGCTCGAATCAAAGCTTA-TCACTT-AAATAAGTCAAACAAGAATAGTCAA
56 ATTT-TAGGA-TTAGGCAC-CAT-AAA-CATAGT--CTTCTCATAAG-GATATACG-ATATTGAC
* * ** * ** ** * ** * * * * *
3001575 ACTAAATCCCTAGTTATTTCATGATGGGGC-ACCATAT-ACATAGTCTTCTCATAAAGTATACGA
112 GCT---T---TGGTT-TCGCAAGA-AAGGCTTTC-T-TCCCCCAAT-TTTTGA-AAAGTCTAAG-
* * *** * * * * **
3001638 TATTGATGCTTTGGTAT-CG-CAAGA-AAGGCTT-T-CT-----TC-TC-CCCAATTTT-TGA-T
164 T-TCG-TGC-CTCAAATGAGACAA-ACATGGATTCTAGTAAAGATCTTCATTC-ATTTTGTGATT
* * *** * * * * *
3001689 A---AGTCTAAGTTCA-TGCCTTAAATGGGATAAACATGGAT-TCTAGTAATGATTTTCATTCAT
224 AGGCACTATAAACACATTCCCCTCATTAGGATAAA-A--GATAT-T-G--ATGATTTTC--TC-T
** ** * * ** * * * ** *
3001749 TTCAT-GATTAGGCA-CTGTAAACAAATTCCCCTCATTAAGATAAATGATATTAATA-TTTTTCT
279 AGCATGGA--A---ATC-GT-TTC--TTTGCCCT-ATTTTGCTTAA--A-ATCAA-AGTTCATCC
* * * * * * * * * * * * *
3001811 GTAG-CACAGA-AAAC-T--TTTCT-TTGCCCTATTTTCCTTAAAATCAAATTT-AATCCATT--
330 CTTGAAAAAGACAAGCGTCGATTCTCGTG-AC-AGTCTCC-T---CTC--TTTTCAA--GATTGG
* ** * ** * * * * **
3001867 GAA-AAAG-ACAAGCA-TCGATTCTCGTGACAATCACCACT--CTTTCAAT-ATTAGG-AAC-CA
385 GAACCAAGAAC-A-CATTCCCTTC-C-TTAGGAT-A-CA-TGACATT-GATGCTTTGGTGTCGCA
* * * ***
3001924 AGAACA-CATTCGCTTCCTT-AGGACACATGACATTGAT-G--
442 ATAAAAGC-TT---TTCTTTCA--AC-C--GTTTTTGATAGAA
*** * * *** * * * * ** *
3001962 -CTTTG-GTGTCAC---AATAAAAGCTTTTCTTTCCATCGTTTCTGATA-GAAT-CAAAGTTTGT
1 TCAAAGTTTGTCACTTAAATAAGA-C-AAACATT-AATAG--TC--ATACTAATCCCCA-TTTAT
* * * * * * ** * *
3002020 CACTTA-AATGAGACAAGCATGAATAATCATACTAATCCCCATTCTTTTCAGGAT-TA-GTCACC
58 --TTTAGGATTAGGC-ACCAT--A-AA-C--A-TAGT---C-TTCTCATAAGGATATACG--A-T
* * * * * * * * *
3002082 ATTAATG-TTAGGATACACGATATTG-ACGCTTTAACTTAGCAAGAAAGGCTTTCTTCCCCTATT
106 ATTGACGCTTTGGTTTCGC-A-A--GAAAG-------------------GCTTTCTTCCCCCAAT
* * * * * *
3002145 TTTTGAAAAATCTAAGATCGTGCCTCAAATGAGGCAAACATGGATTCCAGTAAAGATCTTTATTA
148 TTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTC
* * * * *
3002210 ATTTTGTGATTAGGCACTGTAAACACATT-CGCTCATTAGGATAAATGATATTAATGATTTTATC
213 ATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTC
* * * * *
3002274 TAGTATGGAAACCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGATA
278 TAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTCATCCCTTGAAAAAGACA
* * * * *
3002339 AGCATAGATTCTCGTGACAATCT-CTACAT-TTTTCAAGATTGTGAACCAAAAACACATTCCCTT
343 AGCGTCGATTCTCGTGACAGTCTCCT-C-TCTTTTCAAGATTGGGAACCAAGAACACATTCCCTT
* * * *
3002402 CAC-TAGGATACATGACATTAATGCTTTGGTGTCGTAATAAAAGCTTTTGTTTCCACCGTTTTTG
406 C-CTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCAACCGTTTTTG
*
3002466 CTAGAA
470 ATAGAA
* * * * * *
3002472 TCAATGTTTGTCACTTAAATAAGTCAAACATGAATAGTCAAACTAAATCTCCATTTATTTCAGGA
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACT-AATCCCCATTTATTTTAGGA
* * * *
3002537 TTGGGCACCATAAACATAGTCTTCTCATAAAGATATACGATATTGATGCTTTGGTATCGCAAGAA
65 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
* *
3002602 AGGCTTTTTTTCCCCCAATTTTTGAAAAGTCTAAGTTCAG-GCCTCAAATGAGATAAACATGGAT
130 AGGC-TTTCTTCCCCCAATTTTTGAAAAGTCTAAGTTC-GTGCCTCAAATGAGACAAACATGGAT
* * * * * * *
3002666 TCTAGTAATGACCTTCATTCATTTTATGATTAGACACTGTAAACAAATTCCCCTAATTAGGATAA
193 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAA
* * * * * * * *
3002731 ATGATATTGATTATTTTCTCTAGCATAGAAAACTTTTCTTTGCCCAATTTTTCTTAAAATCAATG
258 AAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAG
* * * * * * * *
3002796 TTAATCCCTTAAAAAAGACAAGCATCGATTCTCGTTATAGTCTCCACACTTTTCAAGATTAGGAA
323 TTCATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAA
** * * * * * *
3002861 GGAAGAACAAATTCCCCTCATTAGGATACATGACATTGATGTTTTGGTGTCGCAATAAAGGTTTT
388 CCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTT
*
3002926 TCTTTCAACCATTTTTGATAGAA
453 TCTTTCAACCGTTTTTGATAGAA
* * * * *
3002949 TCAAAGTTTGTCTCTCAAATAAGAC-AAGATGAATAGTCATACTAATCCTCATTCT-TTTTAGGA
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATT-TATTTTAGGA
* * * * * ** *
3003012 TTAGGCACCATTAGA-ATAGTCATCACAAAAGGATACACGATATTGGTGCTTTGGTTTCGAAAGA
65 TTAGGCACCA-TAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGA
** *
3003076 AAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTAATGCCTCAAATGAAACAAACATGGAT
129 AAGGCTTTCTT-CCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
** * * *
3003141 TCTAGTACTGATCTTCATTCAATTCGTGATTAGGCA-TAGTAAACACATTCCCCTCACTAGGATA
193 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTA-TAAACACATTCCCCTCATTAGGATA
* * * * * *
3003205 AATA-ATATTGATAATTTTCTCTACCATGGGAATCATTTCTTTGCCCTACTTTCCTTAAAAT-AA
257 AA-AGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAA
** * * * * ** * * *
3003268 ATGTTCATCTTTTAAAAAAGACAAGCATCTATTTTCACGATAGTCTCCACTCTTTTCAAGATTAG
321 A-GTTCATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGG
* * * * ** *
3003333 GAACCAAGACCACATTCCCTT-CTTGAGGATACATGACAATGATGCTTCGGTCTCAAAAGAAAAG
385 GAACCAAGAACACATTCCCTTCCTT-AGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAG
* * * * *
3003397 CATTTCTTTCCATCATTTTTTATAGAA
449 CTTTTCTTTCAACCGTTTTTGATAGAA
* * * * ** *
3003424 TCAAAGTTTGTCATTTAAAGAATACAAACATGAATAGTCATACTAATCCCCATTCT-TTCCAAGA
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATT-TATTTTAGGA
* * * * * *
3003488 GTAGGCACCATAAACGTAGTCTTCTTATAAGGATATATGATATTGATGCTTTGGTTTCACAAGAA
65 TTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAA
* * *
3003553 AGGCTTTCTTCCCACTAATTTTTGAAAACTCTAAGTTCATGCCTCAAATGAGACAAACATGGATT
130 AGGCTTTCTTCCC-CCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT
* ** * * * * *
3003618 CTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACACAATCTCCTGATTAGAATAAA
194 CTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAA
* * * * * *
3003683 AGATATTGATGATTTTTTTTTGCATGGAAATCATTTCTTTGCCCTA---TGTTTAAAATAAAAGT
259 AGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGT
* * * * *
3003745 TCAACCCTTGAAAAAGACAAGCATCGATTCTCATGACAGTCTCCACTATTTTCAAGATTGGGAAC
324 TCATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAAC
* * * **
3003810 CAAGAACACATTCCCTTCATTAGGATACATGACATTGATG-TTTGGTGCCGTAATAATGGCTTTT
389 CAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTT
*
3003874 CTTTCAACCATTTTTGATAGAA
454 CTTTCAACCGTTTTTGATAGAA
* * * * * * * *
3003896 CCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTAATGCTAATCCCTATTTATTTCAGGAT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* * * * * *
3003961 TATGCACCATAAACATAGTCTTCTGATAAGGATACACGATACTAACGCTTTGGTTTCACAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
* * * * *
3004026 GGCTTTCTTCCCACCAATTTTTGATAAGTCTAAGTTCGTTCTTCAAGTGAGACAAACTTGGATTC
131 GGCTTTCTTCCC-CCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * * * *
3004091 TAGTAAAGATCTTCATTCATTTGGTGATTAGGCACTATAAACAAAATCTCCTCATTAAGAAAAAA
195 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAAA
*
3004156 GATATTGATGA-TTT-TCT---AT----A----------G--C-A---TG---GAAATCAAAGTT
260 GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTT
* * * * * *
3004193 CATCCCCTGAAAAAAACAAGCATCGATTCTCATGACAGTCTCCACTATTTTCAAGATTGGGAACC
325 CATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAACC
* * * * *
3004258 AAGAACACATTCCCTTCATTAAGATACATGA-ATTGATG-TTTGGTGCCGTAATAAAGGCTTTTC
390 AAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTC
*
3004321 TTTCAATTC-TTTTTGATAGAA
455 TTTCAA-CCGTTTTTGATAGAA
* * * * * ** *
3004342 TCAAAGGTTGTCTCTCAAGTAAGACAAACATGAATAGTCAGGCTAATCCCAATTTATTTTAGGAT
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
* * * * **
3004407 TAGGCACCATAAATATAGTCTTCTCATAAGGATACACGATATTGATGCTTTAGTTTCAAAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
** * *
3004472 GGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCAAGCCTCAAATTAGACAAATATGGATTC
131 GGCTTTCTT-CCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* * * * * ** * *
3004537 TAGTAATGATCTTCATTAATTTTATAATTAGGCACTGTAAACATGTTCCCCTTATTAGGATAAAT
195 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAAA
* * * * *
3004602 GATATTAATGATTTTCCCTTA-CATGGAAACCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGT
260 GATATTGATGATTTTCTC-TAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGT
* * * * *
3004666 TCATCCCTTGAAAAAGATAAGCATCGACTCTCGTGACAGTCTCCACTATTTTCAAGATTGGGAAC
324 TCATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAAC
* * * * * * *
3004731 CAAGAACATATTCTCTTCAC-CAAGATACAGGACATTGATGCTTTGGTGTCACAAGAAAAGCTTT
389 CAAGAACACATTCCCTTC-CTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTT
* **
3004795 TCTTTCCACCGTTTTTCCTAGAA
453 TCTTTCAACCGTTTTTGATAGAA
* * * * * * *
3004818 TTAATGTTTGTCATTTAAATAAGTCAAACATGAATAG-CAAAACTAAATCCCCAATTATTTTAGG
1 TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTC-ATACT-AATCCCCATTTATTTTAGG
* * * *
3004882 ATTGGGCACCATAAACATAGTCTTTTCATAATGATATACGATATTGACGCTTTGGTATCGCAAGA
64 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGA
* * * *
3004947 AAGGCTTTCTTCACCTCAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATAAGACAAACATTGAT
129 AAGGCTTTCTTC-CCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
*** * * * * * *
3005012 TCTAGTATTCATCTTCATTCATTTCGTGATTAGGCAATGTAAACAAATTCCTCTAATTAGGATAA
193 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAA
*
3005077 ATGATATTGATGATT
258 AAGATATTGATGATT
3005092 AGGATACATG
Statistics
Matches: 8700, Mismatches: 1702, Indels: 754
0.78 0.15 0.07
Matches are distributed among these distances:
446 277 0.03
447 109 0.01
448 1 0.00
449 1 0.00
450 3 0.00
451 3 0.00
453 1 0.00
455 1 0.00
460 8 0.00
463 1 0.00
464 110 0.01
465 44 0.01
466 2 0.00
467 4 0.00
468 5 0.00
469 2 0.00
470 6 0.00
471 10 0.00
472 286 0.03
473 120 0.01
474 539 0.06
475 1642 0.19
476 2030 0.23
477 1966 0.23
478 826 0.09
479 149 0.02
480 2 0.00
482 1 0.00
485 1 0.00
492 1 0.00
493 16 0.00
494 14 0.00
495 10 0.00
496 19 0.00
497 18 0.00
498 6 0.00
499 16 0.00
500 14 0.00
501 16 0.00
502 26 0.00
503 21 0.00
504 21 0.00
505 26 0.00
506 18 0.00
507 24 0.00
508 18 0.00
509 14 0.00
510 15 0.00
511 16 0.00
512 25 0.00
513 15 0.00
514 20 0.00
515 29 0.00
516 8 0.00
517 4 0.00
518 8 0.00
519 9 0.00
520 8 0.00
521 8 0.00
522 12 0.00
523 1 0.00
524 8 0.00
525 6 0.00
526 10 0.00
527 5 0.00
529 10 0.00
530 6 0.00
531 3 0.00
532 6 0.00
533 1 0.00
535 18 0.00
536 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (475 bp):
TCAAAGTTTGTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTTAGGAT
TAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAA
GGCTTTCTTCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
AGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAAAG
ATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTTC
ATCCCTTGAAAAAGACAAGCGTCGATTCTCGTGACAGTCTCCTCTCTTTTCAAGATTGGGAACCA
AGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCT
TTCAACCGTTTTTGATAGAA
Found at i:2996888 original size:953 final size:952
Alignment explanation
Indices: 2993836--3005091 Score: 10209
Period size: 953 Copynumber: 11.8 Consensus size: 952
2993826 CCTTGAGCTT
* * * *
2993836 TCAAAGTTTGTCTCTCAAATAAGACAAATATTAATAGTCATACCAATCCCTATTTATTTCAGGAT
1 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTCAAGAT
* * * ** *
2993901 TAAGCACCATAAACATAGTCTTCTCATAAGCAAACACGATATTGACACTTTGGTTTCGCAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAA
* * * *
2993966 GGCTTTCTTCCCACCAATTTTTGATAAGTCTAAGTTTGTTTCTCAAATAAGACAAACTTGGATTC
131 GGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTC
* * **
2994031 TAGTAAAGATCTTCATTCAATTTGTGAATAAGGCACTATAAACACAATCTCCTTTTTAGGATAAA
196 TAGTAAAGATCTTCATTCATTTTGTG-ATTAGGCACTATAAACACAATCTCCTCATTAGGATAAA
* *
2994096 AGATATTGATGATTTTCTCTAGCATGGAAATTGTTTCTTTACCCTATTTTGCTTAAAATCAAAGT
260 AGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGT
** * * * * * * *
2994161 TCAAACCTTGAAAAAGATAAGCGTTGATTCTCGTGATATTCTCCTCTCTTTTCAAGATTAGGAAC
325 TCATCCCTTGAAAAATACAAGCGTCGATTCTCATGACAGTCTCCTCTCTTTTCAAGATTGGGAAC
* * * **
2994226 CAAGAACGCATTCCCTTCCTTAGGATACGTGACATTGATGTTTTGGTGTCATAATAAAAGCTTTT
390 CAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTT
* * ** * *
2994291 CTTTCCATTGTTTTCGACGGAATTAAAGTTTGTCACTTAAAAAAGACAAACATGAATAGTCATAC
455 CTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATAC
* * *
2994356 TAATCCCTACTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATT
520 TAATCCCCA-TTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGATATT
* * * * *
2994421 GACGCTTTGGTTTTGCAAGAAAGGCTTTTCGTCCCCCCAATTTTTGAAAAGTCTAATTTAGTGCC
584 GACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCGTGCC
* * * * *
2994486 TCAAATGAGTCAAACATGGATTATAGTAATGATCTTCATTCATTTAGTGGTTAGGCACTATAAAA
649 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* *
2994551 ACATTCCCCTCATTAGGATAAAAGATATTGATGATTTTCTCTAGCATGGAACTCGTTTCTTTGCC
714 ACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCC
* * * * *
2994616 CTATTTTGCTTAAAATCAAAGTTCATCCCTTGAAAAAGGCAAGCGTCGATTTTCGTGGCAGTCTC
779 CTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCCTCGATTCTCGTGACAGTCTC
* ** * * * * *
2994681 CTCTCTTTTCAAGATTGGGAACCAAGAACGTATTCTCTTCCTTAGAATACATAACATTGACGCTT
844 CACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * *
2994746 TGGTGTCACAATAAAAGCTTTTCTTT-ACACCGTTTTTGA-CGAAA
909 TGGTGTCGCAATAAAGGCTTTTCTTTCA-ACCGTTATTGATAG-AA
* * * * * * * * * *
2994790 TCAAAGTTTTTCACTTAAACAAGACAAGCA-GAACAGTCATACTAATCCCCATTTTTTTTAGGAT
1 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTCAAGAT
* * * **
2994854 TAGGCACCACAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCACAACTAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAA
* * *
2994919 GGCTTTTCTTCTCC-CTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGAT
131 GGC-TTTCTTC-CCACCAATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGAT
* * * * * *
2994983 TCTAGTAATGATCTTCAGTT-ATTTTGTGATTAGGCATTGTAATCACATTCCCCTCATTAGGATA
194 TCTAGTAAAGATCTTCA-TTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTAGGATA
* * * *
2995047 AATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTTTTTGCCCTATTTTCCTTAAAATCAAA
258 AAAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAA
* * * ** * * * *
2995112 GTTCATCCCTTG-AAAATGACAAGCCTCAATTCTCGTGATTGTATCCACTCTTTCCAAGACTGGG
323 GTTCATCCCTTGAAAAAT-ACAAGCGTCGATTCTCATGACAGTCTCCTCTCTTTTCAAGATTGGG
* * *
2995176 AACTAAGAACACATT-CCTTCATTAGGATACATGACATTGATG-TGTTGGTGTCGCAATAAAGGC
387 AACCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCT-TTGGTGTCGCAATAAAAGC
* * * * * * * * *
2995239 TTTTCTTTCAACCGTTATTGATAGAATCAAAGTATGTCTCTCAAATAAGGCAAACATTACTAGTC
451 TTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTC
* * * *
2995304 ATACCAATCCCCATTTATTTCAGGATTAGGCACCATAAACATAGTGTTCTCGTAAGGATATATGA
516 ATACTAATCCCCATTT-TTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGA
* * * * * *
2995369 TATTGATGCTTTGGTTTCACAATAAAGGC-TTTC-TCCCACCAATTTTTCAAAAGTCTAAGTTCA
580 TATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCG
* * ** * * * **
2995432 TTCCTCAAATGAGACAAACTTGGATTCTAGTAAACATCTTCCTTCATTTTGGGATAAGGCAAAAT
645 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * * * * * **
2995497 AAACGCAATCTCCTTATTAGGATAAAAGATATTGATCATTTTCTCTAGCATGGAAAAGGTTTCTT
710 AAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTT
* * * * * *
2995562 TGCCCTAGTTTACTTAAAATCAAAGTTCATCCCTTGGAAAATATAAGCGTCGATTCTCGTGACAG
775 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCCTCGATTCTCGTGACAG
* * * * ** * * *
2995627 TCTCCTCTTTTTTCAAGATTAGGAACCAGGAACACATTTTCTTCCTTAAGATACATGACATTGAC
840 TCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGAT
* * * * * *
2995692 GGTTTGGTGTCGTAATAAAAGCTTTTCTTTCCACTGTTTTTGATAGAA
905 GCTTTGGTGTCGCAATAAAGGCTTTTCTTTCAACCGTTATTGATAGAA
* * * *
2995740 TCAAAGTTTTTCACTTAAATAAGACAAACATTAATAGTCATACTAATCCCCATTCT-TGTT-ACG
1 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATT-TAT-TTCAAG
* * * ** *
2995803 ATTAGGCACCATAAATATAGTCTTCTCATAGGGATATACGATATTGATGCTTTGGTTTTGCAACA
64 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGA
* * * *
2995868 AAGGCTTTTCTT-CCACCTAATTTTTTAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGG
129 AAGGC-TTTCTTCCCACC-AATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGG
* * * * * * *
2995932 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATTGTAAACACATTCCCCTAAATAGGAT
192 ATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTAGGAT
* * * * * * * *
2995997 AAATGATATTGATGCTTTTCTCTTGCATGGTAATCTTTTTTTTGCCCTATTTTCCATAAAATCAA
257 AAAAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAA
* * * * * *
2996062 AGTTCATCTCC-TAAAAAATACCAGCCTCGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGG
322 AGTTCATC-CCTTGAAAAATACAAGCGTCGATTCTCATGACAGTCTCCTCTCTTTTCAAGATTGG
* ** * *
2996126 GAACCAAGAACACATTCCCTTCATTAGGATAGTTGACATTGATGCTTTAGTGTCGCAATAAAAAC
386 GAACCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGC
* * * * * * * * * * * * *
2996191 TTTTTTTTCAACCATTATTGATAGATTCAAAATTTGTCTCTCAAATAAAACAAACATTAACAATC
451 TTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTC
* * *
2996256 ATACTAATCTCCATTTATTTTAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATACATGA
516 ATACTAATCCCCATTT-TTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGA
* *
2996321 TATTGATGCTTTGCTTTCGCAAGAAAGGC-TTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCG
580 TATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCG
* * * * *
2996385 TTCCTCAAATGAGACAAACTTGGATTCTATTAAAGATCTTCATTCATTTTGTGACTAGGCACTAT
645 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* ** * * * *
2996450 AAACACAATCTTCTCATTTGGATAAAAGATATTGATGAATTTCTCTAGCATGGAAATCGTATCTT
710 AAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTT
* * * * * *
2996515 TGCCTTATTTTGCTTCAAATCAAAGTTCATCCCTTGAAAAAGACAAGCGTCAATTCTCGTGACAA
775 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCCTCGATTCTCGTGACAG
* * * * * *
2996580 TCTCCTCTCTTTTTGCACGATTGGGAACCAAGAATACGTTCCCTCCCTTAGGATACATGACATTG
840 TCTCCACTC-TTTT-CAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTG
* *
2996645 ATGCATTGGTGTCGCAATAAAGGCTTTTCTTTCAACCATTATTGATAGAA
903 ATGCTTTGGTGTCGCAATAAAGGCTTTTCTTTCAACCGTTATTGATAGAA
* * *
2996695 TCAAAGTGTGTCTCTCAAATAAGACAAACATTACTAGTCATACTAATCCCCATTTATTTCAAGAA
1 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTCAAGAT
* * * * * *
2996760 TATGCACCATAATCATAGTCTTCTCGTAGGGATAGACGATATTGATGCTTTGGTTTCACAATAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAA
* * *
2996825 GGCTTTC-TCCCACCAATTTTTAAAAAGTCTAAGTTCATTCCTCAAATGAAACAAACTTGGATTC
131 GGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTC
* * * *
2996889 TAGTAAACATCTTCCTTCATTTTGGGATTAGGCAC-ATTAAACACAATCTCCTTATTAGGATAAA
196 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTA-TAAACACAATCTCCTCATTAGGATAAA
** *
2996953 AGATATTGATGATTTTCTCTAGCATGGAAAAGGTTTCTTTGCCCTAGTTTGCTTAAAATCAAAGT
260 AGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGT
* * * * * *
2997018 TCATCCCTTGGAAAATATAAGCGTCGATTCTCATGGCAGTCTACTCTCTTTTCAAGATTAGAAAC
325 TCATCCCTTGAAAAATACAAGCGTCGATTCTCATGACAGTCTCCTCTCTTTTCAAGATTGGGAAC
* * * *
2997083 CAAGAACACATTCCCTTCCTTAAGG-TAAATGACATTGACGGTTTAGTGTCGCAATAAAAGCTTT
390 CAAGAACACATTCCCTTCCTT-AGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTT
* * * *
2997147 TCTTTCCATCATTTTTGATAGAATCAAAATCTGTCACATAAATAAGACAAACATGAATAGTCATA
454 TCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATA
* * *
2997212 CTATTCCCCATTCTTTTTAGGATTAGGCACCATAAATATAGTCTTCTCATAAGGATATAGGATAT
519 CTAATCCCCATT-TTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGATAT
* * * *
2997277 TGACACTTTGGTTTTGCAAAAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCATGC
583 TGACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCGTGC
* *
2997342 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATTGTAAA
648 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
2997407 CACATTCACCTCAATAGGATAAATGATATTGATGATTTTTTCTAGCATGGAAATCTTTTCTTTGC
713 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGC
* * * * * *
2997472 CCTATTTTCCATAAAATCAAAGTTCATCTCC-TAAAAAATACCAGCCTCGATTCTCATGATAGTC
778 CCTATTTTCCTTAAAATCAAAGTTCATC-CCTTGAAAAAGACAAGCCTCGATTCTCGTGACAGTC
* * *
2997536 TCCACACTTTTCAAGATTGGGAACTAAGAACACATTCCCTTCATTAGGATAGATGACATTGATGC
842 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
** * *
2997601 TTTGGTGTCGCAATAAAAACTTTTCTTTCAACCATTATTGATAGAT
907 TTTGGTGTCGCAATAAAGGCTTTTCTTTCAACCGTTATTGATAGAA
* * * *
2997647 TCAAAGTTTGTCTCTCAAATAAGACAAGCATTAACAGTCATACTAATCTCCATTTATTGCAAGAT
1 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTCAAGAT
* *
2997712 TAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGCTTTCACAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAA
* *
2997777 GGCTTTCTTCCTC-CCAATTTTTTAAAAGTCTAAGTTCGTTCCTCAAATAAGACAAACTTGGATT
131 GGCTTTCTTCC-CACCAATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATT
* * * * * *
2997841 CTAATAAAGATCTTCATTCATTTTGTTACTAGGCACTATAAAAACAATCTTCTCATTTGGATAAA
195 CTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTAGGATAAA
* * * *
2997906 TGATATTGATGATTTTCTCTTGCATGGAAATCGTTTCTTTGCCTTATTTTGCTTCAAATCAAAGT
260 AGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGT
* * * *
2997971 TCATCCCTTGAAAAAGACAAGCGTCAATTCTCGTGACAATCTCCTCTCTTTTTTCAAGATTGGGA
325 TCATCCCTTGAAAAATACAAGCGTCGATTCTCATGACAGTCTCCTCTC--TTTTCAAGATTGGGA
* *
2998036 ACCAAGAATACATTCCCTCCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTT
388 ACCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTT
* *
2998101 TTCTTTCAATCGTTTTTGATAGAATCAAAGTTTGCCACTTAAATAAGACAAACATGAATAGTCAT
453 TTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCAT
** * * * *
2998166 ACTAATCCTTATTCATTTTAGGATTACGCACCATAAACATAGTCTTCTCAAAAAGATATATGATA
518 ACTAATCCCCATT-TTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGATA
* *
2998231 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCTAATTTTTGAAAAGTCTAAGTTCGTG
582 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCGTG
* * *
2998296 CCTCAAATTAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGTACTGTAA
647 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * *
2998361 TCACATTCCCCTCATTAGAATAAATGATATTGATGATTTTCTCTAGCATGGAAATC-TTTTTTTT
712 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTG
* * * * * *
2998425 CCTTATTTTCCTTAAAATCAAAGTTCATCACTTGAAAAAAACAAGCCTCGATTCCCATGATAGTC
777 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCCTCGATTCTCGTGACAGTC
* * * * *
2998490 TCGACTTTTTTCAAGATTGGAAACCAAGAACATATTCCCTTCATTACGATACATGACATTGATGC
842 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
* * *
2998555 ATTGGTGTCGTAATAAAGGCTTTTCTTTCAACCATTATTGATAGAA
907 TTTGGTGTCGCAATAAAGGCTTTTCTTTCAACCGTTATTGATAGAA
* * *
2998601 TCAAAGTATGTCTCTCAAATAAGACAAACATTACTAGTCATACTAATCCCCATTTAGTTCAAGAT
1 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTCAAGAT
* ** * * * * *
2998666 TATGCACCATAGGCACAGTCTTCTCGTAGGGATAGACGATATTGATGCTTTGGTTTCACAATAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAA
* *
2998731 GGCTTTC-TCCCACCAATTTTTAAAAAGTCTAAGTTCATTCCTCAAATGAGACAAACTTGGATTC
131 GGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTC
* * * * *
2998795 TAGTAAACATCTTCCTTCATTTTGGGATTAGGCACAATAAACACAATCTCCTTATTAGGATAAAA
196 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTAGGATAAAA
** *
2998860 GATATTGATGATTTTCTCTAGCATGGAAAAGGTTTCTTTGCCCTAGTTTGCTTAAAATCAAAGTT
261 GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTT
* * * * *
2998925 CATCCCTTGGAAAATATAAGCGTCGATTCTCATGACAGTCTGCTCTCTTTCCAAGATTGGAAACC
326 CATCCCTTGAAAAATACAAGCGTCGATTCTCATGACAGTCTCCTCTCTTTTCAAGATTGGGAACC
* * *
2998990 AAGAACACATTCCCTTCCTTAAGG-TACATGACATTGATGGTTTAGTGTAGCAATAAAAGCTTTT
391 AAGAACACATTCCCTTCCTT-AGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTT
* *
2999054 CTTTCCATCGTTTTTGATAGAATCAAAGTCTGTCAGTTAAATAAGACAAACATGAATAGTCATAC
455 CTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATAC
* * * *
2999119 TAA-CCCCATTCTTTTTGGGATTAGGCACCAGAAATATAGTCTTCTCATAAGGATATAGGATATT
520 TAATCCCCATT-TTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGATATT
* * * * * *
2999183 GACACTTTGGTTTTGCAAAAAAGGCTTTTCTTCACCCCAATTTTTTGAAAGTCTAAGTTCATGCC
584 GACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCGTGCC
* *
2999248 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCATTGTAAAC
649 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC
* * * * * * *
2999313 ACATTCACCTCAATAGGATAAATGATATTGATGTTTTTTTCGAGCATGGAAATCTTTTGTTTGCC
714 ACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCC
* * *
2999378 CTATTTTCCTTAAAATCAAAGTTCATCTCC-TAAAAAAGACCAGCCTCGATTCTCATGACAGTCT
779 CTATTTTCCTTAAAATCAAAGTTCATC-CCTTGAAAAAGACAAGCCTCGATTCTCGTGACAGTCT
* *
2999442 CCACACTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTAATGCT
843 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
*
2999507 TTGGTGTCGCAATAAAGGCTTTTCTTTCAACCGTTATTGAT-GAT
908 TTGGTGTCGCAATAAAGGCTTTTCTTTCAACCGTTATTGATAGAA
* * *
2999551 TCAAAGTTTGTCTCTCGAATAAGACAAACATTAATAGTTATACTAATCCCTATTTATTTCAAGAT
1 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTCAAGAT
* * *
2999616 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGGTGCTTTGCTTTCGCAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAA
* *
2999681 GGCTTTGTTCACC-CCAAATTTTT-AAAAGTCTAAGTTTGTTCCTCAAATGAGACAAACTTGGAT
131 GGCTTTCTTC-CCACC-AATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGAT
* * * *
2999744 TCTAGTAAACATCTTCAATCATTTTGTGACTAGGCACTATAAACACAGTCTCCTCATTAGGATAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTAGGATAA
*
2999809 AAGATATTGATGATTTTCTCTAGCATGAAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAG
259 AAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAG
* * * * * * * *
2999874 TTCATCCCTTGGAAAAGACAAGCGTCAATTCTCATGGCAATCACCTTTCTTTTTTGAAGATTGGG
324 TTCATCCCTTGAAAAATACAAGCGTCGATTCTCATGACAGTCTCC--TCTCTTTTCAAGATTGGG
* * *
2999939 AACCAAGAACACATTCCCTCCCTTAGGATTCATGACATTGATGCTTTGGTGTCGCAATAAAAACT
387 AACCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCT
* *
3000004 TTTCTTTCCATCGTTTTTGATAGAATCTAAGTTTGTCACTTAAATAAGACAAACAAGAATAGTCA
452 TTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCA
* * * * *
3000069 CACTAATCCCCATTTTTTTAGGATTCGGCACTATAAACATAGTCTTCTCAAAAGGATATACGATA
517 TACTAATCCCCATTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGATA
* * ** *
3000134 TTGACGTTTTGGTTTCACAAGAAAGGCTTTTCTTCCCTTCAATTTTTGAAAAGTCTAAGTTCGTG
582 TTGACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCGTG
*
3000199 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATCCATTTTGTGATTAGGCACTATAA
647 CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * *
3000264 ACACGTTCCCCTTATTAAGATAAATGATATTGATGATTTTTTCTAGTATGGAAATCTTTTCTTTG
712 ACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTG
* * * * *
3000329 CCCTATTTTCTTTAAAATCAAAGTTCATCCCTTGAAAAAGACAGGCCTCGATTCCCGCGACAGTG
777 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCCTCGATTCTCGTGACAGTC
* * *
3000394 TCCACTCTTTTCAAGATTGGAAACCATGAACACATTCCCTACATTAGGATACATGACATTGATGC
842 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGC
*
3000459 TTTGGTGTTGCAAT-AAGGCTTTTCTTTCAACCGTTATTGATAGAA
907 TTTGGTGTCGCAATAAAGGCTTTTCTTTCAACCGTTATTGATAGAA
* * * * *
3000504 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTATTCCCTATTTATTTTAGGTT
1 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTCAAGAT
* * * * * **
3000569 TAGGCTCCATAAACTTTGTCTTTTCATAAGGATACACGATATTGACGCTTTGGTTTTGCAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAA
* *
3000634 GGCTTTCTTCCCACCAATTTTTGATAAGTCTACGTTCGTTCCTCAAATGAGACAAACTTGGATTC
131 GGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTC
*
3000699 TAGTAAAGATCTTCATTTATTTTGTGATTAGGCACTATAAACACAATC-CTCTCATTAGGATAAA
196 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTC-CTCATTAGGATAAA
* * * *
3000763 AGATATTGATGTTTTTCTCTAACATGGTAATCGTTTCTTTGCCCTATTTTGCTCAAAATCAAAGT
260 AGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGT
* * * *
3000828 TCATTCCTTGAAAAAGACAAGCGTCGATTCTCATGATAGTTTCCTCTCTTTTCAAGATTGGGAAC
325 TCATCCCTTGAAAAATACAAGCGTCGATTCTCATGACAGTCTCCTCTCTTTTCAAGATTGGGAAC
* * * * *
3000893 AAAGAACACATTCCTTTCCTTAGGATACATGACTTTGATGCTTTGGTGCCACAATAAAAGCTTTT
390 CAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTT
* * *
3000958 CTTTCCATCGTTTTTGATAGAATAAAAGTTTGTCACTTAAAAAAGACAAACATGAATAGTCATAT
455 CTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATAC
* * * * * *
3001023 TAATCCTCATTCTTTTCAAGATTATGCACCAT-TA-A-AG-----T--T-AGGATACATGATATT
520 TAATCCCCATT-TTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGATATT
* ** * * *
3001077 GATGCTTTAATTTCGCAAGAAAAGC-TTTCTT-CACCC-ATTTTTTGAAAAGTCTAAGATCGTGC
584 GACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTT-AAAAGTCTAAGTTCGTGC
* * * * * * *
3001139 TTCAAATAAGACAAACATGGATTCTAGTAATAATATTCATTAATTTTGCGATTAGGCACTGTAAA
648 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * ** * * *
3001204 CACATTCCCCTTATTAGGATAAATGATATTAACGA----GACAAACATGGATTCCAATAAAGATC
713 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGA----AAT--CG-T-
**** ** * * * * * ****
3001265 TTCATTAATTTTATGATTAGGCAC-TATAAA-CACA-TTC-GCTCATTAGGATAAATGATATTAA
770 TTC-TT--TGCCCT-ATT-TTC-CTTA-AAATCAAAGTTCATC-CCTT--GA-AAAAGACAAGCC
* ** ** * *** ** * ***
3001326 T-GATTTTATCTAGTATGGAAACCTTTTCTTTACCCTATTT--TTCTT-AAAATCAA-AGTTCA-
824 TCGA---T-TCTCG--T-G--A-C-AGTCTCCACTCT-TTTCAAGATTGGGAACCAAGAACACAT
* ** * ** * * * ***** *
3001385 TCCCTTAAAAAAGATA-A-G-CATCAAT--TCTCGTG--ACAATCTCCAC-ATT-TTTCAA--G-
877 TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAGGCTTTTCTTTCAACCGT
*
3001438 -ATTGGGAACCAAGAA
942 TATT--G-A--TAGAA
* * * * * ** ** * *** *
3001453 -CACA-TTCCCT-TCACT-AGGATACATGACATTGATGCTTTGGT-GTCGCAATAA-AAGCTTTT
1 TCAAAGTT---TGTCTCTCA-AATA-A-GACA---A-ACATTAATAGTCATACTAATCCCCATTT
* ** ** * * * * * *** * **
3001512 CTTTCCACCATTTTTGC-TC-GAATCAAAG-CTTATCACTTAA--ATA-A-G-TCAAACAAG-AA
56 ATTT-CAAGA-TTAGGCACCATAAACATAGTCTTCTCA--TAAGGATACACGAT-ATTGATGCTT
* * ** * * ** *** *
3001568 TAG--TCA-AACTAAATCCCTAGTTATT-TCA-TGA-TGGGGCACCATA-TAC-ATAG-TC-TT-
116 TGGTTTCACAA-GAAA-GGCT--TTCTTCCCACCAATTTTTG-A--AAAGT-CTA-AGTTCGTTC
* * * * * *
3001622 CTCATAAAGTATACGATATTGATGCTTTGGTATCGCAAG-AAAGGCTTTCTTC-TCCCCAATTTT
172 CTCA-AATG-AGAC-A-A---A--C-TTGG-AT-TCTAGTAAA-G--ATCTTCAT--TC-ATTTT
* * *** * * * *
3001685 -TGA-TA---AGTCTAAGTTC-ATGC-CTTAAATGGGATAAACATGGAT-TCTAGTAATGATTTT
219 GTGATTAGGCACTATAAACACAAT-CTCCTCATTAGGATAAA-A--GATAT-T-G--ATGATTTT
** ** * * ** * * *
3001742 CATTCATTTCAT-GATTAGGCA-CTGTAAACAAATTCCCCTCATTAAGATAAATGATATTAATA-
276 C--TC-TAGCATGGA--A---ATC-GT-TTC--TTTGCCCT-ATTTTGCTTAA--A-ATCAA-AG
** ** * * * * * * * * * *
3001804 TTTTTCTGTAGCACAGA-A-AA-C-T--TTTCT-TTGCCCTATTTTCCTTAAAATCAAATTT-AA
324 TTCATCCCTTG-AAAAATACAAGCGTCGATTCTCATG-AC-AGTCTCC-T---CTC--TTTTCAA
* * ** * ** * * * *
3001861 TCCATT--GAA-AAAG-ACAAGCA-TCGATTCTCGTGACAATCACCACT--CTTTCAAT-ATTAG
380 --GATTGGGAACCAAGAAC-A-CATTCCCTTC-C-TTAGGAT-A-CA-TGACATT-GATGCTTTG
** * * * * *
3001918 G-AAC-CAAGAACACATTCGC-TTCCTTAGGACACATGACATTGATGCTTTGGTG-TCACAATAA
435 GTGTCGCAATAA-A-A---GCTTTTCTT---TC-CAT--C---G-T--TTT--TGAT-AGAATCA
* * *
3001979 AAGCTTTTCTTTCCATCGTTTCTGATAGAATCAAAGTTTGTCACTTAAATGAGACAAGCATGAAT
480 AAG---TT-TGT-CA------CT--TA-AATAAGA--------C---------A-AA-CATGAAT
* * * * *
3002044 AATCATACTAATCCCCATTCTTTTCAGGATTAGTCACCAT-TA-AT-G-----T--T-AGGATAC
512 AGTCATACTAATCCCCATT-TTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAT
* *** * * *
3002098 ACGATATTGACGCTTTAACTTAGCAAGAAAGGC-TTTCTT--CCCCTATTTTTTGAAAAATCTAA
576 ATGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTT-AAAAGTCTAA
* * * * * *
3002160 GATCGTGCCTCAAATGAGGCAAACATGGATTCCAGTAAAGATCTTTATTAATTTTGTGATTAGGC
640 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGC
* * * * * * *
3002225 ACTGTAAACACATT-CGCTCATTAGGATAAATGATATTAATGATTTTATCTAGTATGGAAACCTT
705 ACTATAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCGT
* * *
3002289 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGATAAGCATAGATTCTCGT
770 TTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCCTCGATTCTCGT
* * * * *
3002354 GACAATCTCTACAT-TTTTCAAGATTGTGAACCAAAAACACATTCCCTTCACTAGGATACATGAC
835 GACAGTCTCCAC-TCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGAC
* * * * * * *
3002418 ATTAATGCTTTGGTGTCGTAATAAAAGCTTTTGTTTCCACCGTTTTTGCTAGAA
899 ATTGATGCTTTGGTGTCGCAATAAAGGCTTTTCTTTCAACCGTTATTGATAGAA
* * * * * * * *
3002472 TCAATGTTTGTCACTTAAATAAGTCAAACATGAATAGTCAAACTAAATCTCCATTTATTTCAGGA
1 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACT-AATCCCCATTTATTTCAAGA
* * * * *
3002537 TTGGGCACCATAAACATAGTCTTCTCATAAAGATATACGATATTGATGCTTTGGTATCGCAAGAA
65 TTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAA
* * * *
3002602 AGGCTTTTTTTCCC-CCAATTTTTGAAAAGTCTAAGTTCAG-GCCTCAAATGAGATAAACATGGA
130 AGGC-TTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTC-GTTCCTCAAATGAGACAAACTTGGA
* * * * * * *
3002665 TTCTAGTAATGACCTTCATTCATTTTATGATTAGACACTGTAAACA-AATTCCCCTAATTAGGAT
193 TTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAA-TCTCCTCATTAGGAT
* * * * * * *
3002729 AAATGATATTGATTATTTTCTCTAGCATAGAAAACTTTTCTTTGCCCAATTTTTCTTAAAATCAA
257 AAAAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAA
* * * * * * * * * * *
3002794 TGTTAATCCCTTAAAAAAGACAAGCATCGATTCTCGTTATAGTCTCCACACTTTTCAAGATTAGG
322 AGTTCATCCCTTGAAAAATACAAGCGTCGATTCTCATGACAGTCTCCTCTCTTTTCAAGATTGGG
** * * * * * *
3002859 AAGGAAGAACAAATTCCCCTCATTAGGATACATGACATTGATGTTTTGGTGTCGCAATAAAGGTT
387 AACCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCT
* * * * * *
3002924 TTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGAC-AAGATGAATAGTCA
452 TTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCA
* * * * * * *
3002988 TACTAATCCTCATTCTTTTTAGGATTAGGCACCATTAGA-ATAGTCATCACAAAAGGATACACGA
517 TACTAATCCCCATT-TTTTTAGGATTAGGCACCA-TAAACATAGTCTTCTCATAAGGATATATGA
** * * **
3003052 TATTGGTGCTTTGGTTTCGAAAGAAAGGC-TTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTAA
580 TATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCG
* * * *
3003116 TGCCTCAAATGAAACAAACATGGATTCTAGTACTGATCTTCATTCAATTCGTGATTAGGCA-TAG
645 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTA-
* * * * * *
3003180 TAAACACATTCCCCTCACTAGGATAAATAATATTGATAATTTTCTCTACCATGGGAATCATTTCT
709 TAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCT
* ** * * * * ** *
3003245 TTGCCCTACTTTCCTTAAAAT-AAATGTTCATCTTTTAAAAAAGACAAGCATCTATTTTCACGAT
774 TTGCCCTATTTTCCTTAAAATCAAA-GTTCATCCCTTGAAAAAGACAAGCCTCGATTCTCGTGAC
* * *
3003309 AGTCTCCACTCTTTTCAAGATTAGGAACCAAGACCACATTCCCTTC-TTGAGGATACATGACAAT
838 AGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATT-AGGATACATGACATT
* * ** * * * * * * * *
3003373 GATGCTTCGGTCTCAAAAGAAAAGCATTTCTTTCCATCATTTTTTATAGAA
902 GATGCTTTGGTGTCGCAATAAAGGCTTTTCTTTCAACCGTTATTGATAGAA
* * * * *
3003424 TCAAAGTTTGTCAT-TTAAAGAATACAAACATGAATAGTCATACTAATCCCCATTCT-TTCCAAG
1 TCAAAGTTTGTC-TCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATT-TATTTCAAG
* * * * *
3003487 AGTAGGCACCATAAACGTAGTCTTCTTATAAGGATATATGATATTGATGCTTTGGTTTCACAAGA
64 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGA
* * * * *
3003552 AAGGCTTTCTTCCCACTAATTTTTGAAAACTCTAAGTTCATGCCTCAAATGAGACAAACATGGAT
129 AAGGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGAT
* ** * * *
3003617 TCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACACAATCTCCTGATTAGAATAA
194 TCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTAGGATAA
* * * * * *
3003682 AAGATATTGATGATTTTTTTTTGCATGGAAATCATTTCTTTGCCCTA---TGTTTAAAATAAAAG
259 AAGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAG
* * * * *
3003744 TTCAACCCTTGAAAAAGACAAGCATCGATTCTCATGACAGTCTCCACTATTTTCAAGATTGGGAA
324 TTCATCCCTTGAAAAATACAAGCGTCGATTCTCATGACAGTCTCCTCTCTTTTCAAGATTGGGAA
* * * **
3003809 CCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG-TTTGGTGCCGTAATAATGGCTTT
389 CCAAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTT
* * * * * * * *
3003873 TCTTTCAACCATTTTTGATAGAACCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTAATG
454 TCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATA
* * * * * * *
3003938 CTAATCCCTATTTATTTCAGGATTATGCACCATAAACATAGTCTTCTGATAAGGATACACGATAC
519 CTAATCCCCATTT-TTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGATAT
* * * * * *
3004003 TAACGCTTTGGTTTCACAAGAAAGGC-TTTCTTCCCACCAATTTTTGATAAGTCTAAGTTCGTTC
583 TGACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCGTGC
* * * * *
3004067 TTCAAGTGAGACAAACTTGGATTCTAGTAAAGATCTTCATTCATTTGGTGATTAGGCACTATAAA
648 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * * * * *
3004132 CAAAATCTCCTCATTAAGAAAAAAGATATTGATGATTTTCTATAGC------AT-G-------G-
713 CACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGC
* * * *
3004182 -------------AAATCAAAGTTCATCCCCTGAAAAAAACAAGCATCGATTCTCATGACAGTCT
778 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCCTCGATTCTCGTGACAGTCT
* *
3004234 CCACTATTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAAGATACATGA-ATTGATG-T
843 CCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * *
3004297 TTGGTGCCGTAATAAAGGCTTTTCTTTCAATTC-TTTTTGATAGAA
908 TTGGTGTCGCAATAAAGGCTTTTCTTTCAA-CCGTTATTGATAGAA
* * * ** * * *
3004342 TCAAAGGTTGTCTCTCAAGTAAGACAAACATGAATAGTCAGGCTAATCCCAATTTATTTTAGGAT
1 TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTCAAGAT
* * *
3004407 TAGGCACCATAAATATAGTCTTCTCATAAGGATACACGATATTGATGCTTTAGTTTCAAAAGAAA
66 TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAA
* *** *
3004472 GGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCAAGCCTCAAATTAGACAAA-TATGGATT
131 GGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACT-TGGATT
* * * * * *** * *
3004536 CTAGTAATGATCTTCATTAATTTTATAATTAGGCACTGTAAACATGTTCCCCTTATTAGGATAAA
195 CTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTAGGATAAA
* * * * * *
3004601 TGATATTAATGATTTTCCCTTA-CATGGAAACCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG
260 AGATATTGATGATTTTCTC-TAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAG
* * * * * * *
3004665 TTCATCCCTTGAAAAAGATAAGCATCGACTCTCGTGACAGTCTCCACTATTTTCAAGATTGGGAA
324 TTCATCCCTTGAAAAATACAAGCGTCGATTCTCATGACAGTCTCCTCTCTTTTCAAGATTGGGAA
* * * * * * *
3004730 CCAAGAACATATTCTCTTCAC-CAAGATACAGGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
389 CCAAGAACACATTCCCTTC-CTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTT
* ** * * * *
3004794 TTCTTTCCACCGTTTTTCCTAGAATTAATGTTTGTCATTTAAATAAGTCAAACATGAATAG-CAA
453 TTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTC-A
* * * * * *
3004858 AACTAAATCCCCAATTATTTTAGGATTGGGCACCATAAACATAGTCTTTTCATAATGATATACGA
517 TACT-AATCCCC-ATTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGA
* * * * *
3004923 TATTGACGCTTTGGTATCGCAAGAAAGGC-TTTCTTCACCTCAATTTTTGAAAAGTCTAAGTTCA
580 TATTGACGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCG
* * * * * * *
3004987 TGCCTCAAATAAGACAAACATTGATTCTAGTATTCATCTTCATTCATTTCGTGATTAGGCAATGT
645 TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT
* * *
3005052 AAACAAATTCCTCTAATTAGGATAAATGATATTGATGATT
710 AAACACATTCCCCTCATTAGGATAAATGATATTGATGATT
3005092 AGGATACATG
Statistics
Matches: 8482, Mismatches: 1454, Indels: 763
0.79 0.14 0.07
Matches are distributed among these distances:
917 2 0.00
918 289 0.03
919 9 0.00
920 87 0.01
921 112 0.01
922 69 0.01
923 188 0.02
924 3 0.00
934 1 0.00
935 7 0.00
938 6 0.00
939 151 0.02
940 9 0.00
941 35 0.00
942 4 0.00
943 3 0.00
944 6 0.00
946 7 0.00
947 92 0.01
948 334 0.04
949 42 0.00
950 725 0.09
951 1273 0.15
952 896 0.11
953 2050 0.24
954 627 0.07
955 565 0.07
956 13 0.00
957 19 0.00
958 20 0.00
959 13 0.00
960 12 0.00
961 11 0.00
962 5 0.00
963 13 0.00
965 3 0.00
966 4 0.00
967 1 0.00
968 1 0.00
969 3 0.00
970 5 0.00
971 3 0.00
972 4 0.00
973 22 0.00
974 10 0.00
975 4 0.00
976 5 0.00
977 23 0.00
978 17 0.00
979 9 0.00
980 13 0.00
981 5 0.00
982 6 0.00
983 3 0.00
984 1 0.00
985 1 0.00
986 4 0.00
987 6 0.00
988 5 0.00
989 11 0.00
990 9 0.00
991 15 0.00
992 20 0.00
993 5 0.00
994 4 0.00
995 8 0.00
996 21 0.00
997 4 0.00
998 2 0.00
999 4 0.00
1000 3 0.00
1001 2 0.00
1002 1 0.00
1003 4 0.00
1004 4 0.00
1006 16 0.00
1007 13 0.00
1008 10 0.00
1009 13 0.00
1010 12 0.00
1011 24 0.00
1012 18 0.00
1013 5 0.00
1014 20 0.00
1015 11 0.00
1016 18 0.00
1017 21 0.00
1018 17 0.00
1019 30 0.00
1020 30 0.00
1021 12 0.00
1022 14 0.00
1023 4 0.00
1024 5 0.00
1025 1 0.00
1027 1 0.00
1028 32 0.00
1029 175 0.02
1032 7 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (952 bp):
TCAAAGTTTGTCTCTCAAATAAGACAAACATTAATAGTCATACTAATCCCCATTTATTTCAAGAT
TAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAA
GGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTTCCTCAAATGAGACAAACTTGGATTC
TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAATCTCCTCATTAGGATAAAA
GATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCTATTTTGCTTAAAATCAAAGTT
CATCCCTTGAAAAATACAAGCGTCGATTCTCATGACAGTCTCCTCTCTTTTCAAGATTGGGAACC
AAGAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTC
TTTCCATCGTTTTTGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACT
AATCCCCATTTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATATATGATATTGA
CGCTTTGGTTTCGCAAGAAAGGCTTTTCTTCCCCCCAATTTTTTAAAAGTCTAAGTTCGTGCCTC
AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
ATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCGTTTCTTTGCCCT
ATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCCTCGATTCTCGTGACAGTCTCCA
CTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
GTGTCGCAATAAAGGCTTTTCTTTCAACCGTTATTGATAGAA
Found at i:3003204 original size:475 final size:474
Alignment explanation
Indices: 3001237--3005091 Score: 4174
Period size: 475 Copynumber: 8.2 Consensus size: 474
3001227 TGATATTAAC
* * * * * * *
3001237 GAGACAAACATGGATTCCAATAAAGATCTTCATTAATTTTATGATTAGGCACTATAAACACATT-
1 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACAAATTC
* * * * * *
3001301 CGCTCATTAGGATAAATGATATTAATGATTTTATCTAGTATGGAAACCTTTTCTTTACCCTATTT
66 CCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAAACTTTTCTTTGCCCTATTT
* * * *
3001366 TTCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCATCAATTCTCGTGACAATCTCCACATT
131 TCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACA-T
*
3001431 TTTCAAGATTGGGAACCAAGAACACATTCCCTTCACTAGGATACATGACATTGATGCTTTGGTGT
195 TTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * * * *
3001496 CGCAATAAAAGCTTTTCTTTCCACCATTTTTGCTCGAATCAAAGCTTATCACTTAAATAAGTCAA
260 CGCAATAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * * ** *
3001561 ACAAGAATAGTCAAACTAAATCCCTAGTTATTTCATGATGGGGCACCATATACATAGTCTTCTCA
325 ACATGAATAGTCATACT-AATCCC-AATTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * * * * *
3001626 TAAAG-TATACGATATTGATGCTTTGGTATCGCAAGAAAGGCTTTCTTCTCCCCAATTTTTGATA
388 TAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAA
*
3001690 AGTCTAAGTTCATGCCTTAAAT
453 AGTCTAAGTTCATGCCTCAAAT
* * *
3001712 GGGATAAACATGGATTCTAGTAATGATTTTCATTCATTTCATGATTAGGCACTGTAAACAAATTC
1 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACAAATTC
* * * **
3001777 CCCTCATTAAGATAAATGATATTAAT-ATTTTTCTGTAGCACAGAAAACTTTTCTTTGCCCTATT
66 CCCTCATTAGGATAAATGATATTGATGA-TTTTCTCTAGCATGGAAAACTTTTCTTTGCCCTATT
* * * * * *
3001841 TTCCTTAAAATCAAATTTAATCCATTGAAAAAGACAAGCATCGATTCTCGTGACAATCACCAC-T
130 TTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACAT
* * * * *
3001905 CTTTCAATATTAGGAACCAAGAACACATTCGCTTCCTTAGGACACATGACATTGATGCTTTGGTG
195 -TTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * * * * *
3001970 TCACAATAAAAGCTTTTCTTTCCATCGTTTCTGATAGAATCAAAGTTTGTCACTTAAATGAGACA
259 TCGCAATAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * *
3002035 AGCATGAATAATCATACTAATCCCCATTCTTTTCAGGATTAGTCACCAT-TA-AT-G-----T--
324 AACATGAATAGTCATACTAATCCCAATT-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* *** * * * *
3002090 T-AGGATACACGATATTGACGCTTTAACTTAGCAAGAAAGGCTTTCTT-CCCCTATTTTTTGAAA
388 TAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAA
* * *
3002153 AATCTAAGATCGTGCCTCAAAT
453 AGTCTAAGTTCATGCCTCAAAT
* * * * * ** *
3002175 GAGGCAAACATGGATTCCAGTAAAGATCTTTATTAATTTTGTGATTAGGCACTGTAAACACATT-
1 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACAAATTC
* * * * *
3002239 CGCTCATTAGGATAAATGATATTAATGATTTTATCTAGTATGGAAACCTTTTCTTTGCCCTATTT
66 CCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAAACTTTTCTTTGCCCTATTT
* * * * *
3002304 TCCTTAAAATCAAAGTTCATCCCTTGAAAAAGATAAGCATAGATTCTCGTGACAATCTCTACATT
131 TCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACA-T
* * * *
3002369 TTTCAAGATTGTGAACCAAAAACACATTCCCTTCACTAGGATACATGACATTAATGCTTTGGTGT
195 TTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * * * * *
3002434 CGTAATAAAAGCTTTTGTTTCCACCGTTTTTGCTAGAATCAATGTTTGTCACTTAAATAAGTCAA
260 CGCAATAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* *
3002499 ACATGAATAGTCAAACTAAATCTCC-ATTTATTTCAGGATTGGGCACCATAAACATAGTCTTCTC
325 ACATGAATAGTCATACT-AATC-CCAATTT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* * * * * *
3002563 ATAAAGATATACGATATTGATGCTTTGGTATCGCAAGAAAGGCTTTTTTTCCCCCAATTTTTGAA
387 ATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGAA
*
3002628 AAGTCTAAGTTCAGGCCTCAAAT
452 AAGTCTAAGTTCATGCCTCAAAT
* * * *
3002651 GAGATAAACATGGATTCTAGTAATGACCTTCATTCATTTTATGATTAGACACTGTAAACAAATTC
1 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACAAATTC
* * * *
3002716 CCCTAATTAGGATAAATGATATTGATTATTTTCTCTAGCATAGAAAACTTTTCTTTGCCCAATTT
66 CCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAAACTTTTCTTTGCCCTATTT
* * * * *
3002781 TTCTTAAAATCAATGTTAATCCCTTAAAAAAGACAAGCATCGATTCTCGTTATAGTCTCCACACT
131 TCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACA-T
* ** * * *
3002846 TTTCAAGATTAGGAAGGAAGAACAAATTCCCCTCATTAGGATACATGACATTGATGTTTTGGTGT
195 TTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * *
3002911 CGCAATAAAGGTTTTTCTTTCAACCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGAC-A
260 CGCAATAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * *
3002975 AGATGAATAGTCATACTAATCCTC-ATTCTTTTTAGGATTAGGCACCATTAGA-ATAGTCATCAC
325 ACATGAATAGTCATACTAATCC-CAATT-TTTTCAGGATTAGGCACCA-TAAACATAGTCTTCTC
* *
3003038 AAAAGGATACACGATATTGGTGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGAA
387 ATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGAA
*
3003103 AAGTCTAAGTTAATGCCTCAAAT
452 AAGTCTAAGTTCATGCCTCAAAT
* * * * *
3003126 GAAACAAACATGGATTCTAGTACTGATCTTCATTCAATTCGTGATTAGGCA-TAGTAAACACATT
1 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACT-GTAAACAAATT
* * * * * * * *
3003190 CCCCTCACTAGGATAAATAATATTGATAATTTTCTCTACCATGGGAATCATTTCTTTGCCCTACT
65 CCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAAACTTTTCTTTGCCCTATT
** * * ** *
3003255 TTCCTTAAAAT-AAATGTTCATCTTTTAAAAAAGACAAGCATCTATTTTCACGATAGTCTCCACT
130 TTCCTTAAAATCAAA-GTTCATCCCTTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCAC-
* * * * *
3003319 CTTTTCAAGATTAGGAACCAAGACCACATTCCCTTC-TTGAGGATACATGACAATGATGCTTCGG
193 ATTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATT-AGGATACATGACATTGATGCTTTGG
* ** * * * * * *
3003383 TCTCAAAAGAAAAGCATTTCTTTCCATCATTTTTTATAGAATCAAAGTTTGTCAT-TTAAAGAAT
257 TGTCGCAATAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC-TCTTAAATAAG
* * * * *
3003447 ACAAACATGAATAGTCATACTAATCCCCATTCTTTCCAAGAGTAGGCACCATAAACGTAGTCTTC
321 ACAAACATGAATAGTCATACTAATCCCAATT-TTTTCAGGATTAGGCACCATAAACATAGTCTTC
* * * * *
3003512 TTATAAGGATATATGATATTGATGCTTTGGTTTC-ACAAGAAAGGCTTTCTTCCCACTAATTTTT
385 TCATAAGGATACACGATATTGATGCTTTGGTTTCGA-AAGAAAGGCTTTCTTCCCCCCAATTTTT
*
3003576 GAAAACTCTAAGTTCATGCCTCAAAT
449 GAAAAGTCTAAGTTCATGCCTCAAAT
3003602 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACACAA-T
1 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACA-AATT
* * * * * * * * *
3003666 CTCCTGATTAGAATAAAAGATATTGATGATTTTTTTTTGCATGGAAATCATTTCTTTGCCCTA-T
65 CCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAAACTTTTCTTTGCCCTATT
* * * * *
3003730 GT--TTAAAATAAAAGTTCAACCCTTGAAAAAGACAAGCATCGATTCTCATGACAGTCTCCACTA
130 TTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCAC-A
3003793 TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATG-TTTGGTG
194 TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * ** * * *
3003857 CCGTAATAATGGCTTTTCTTTCAACCATTTTTGATAGAACCAAAGTTTGTCTCTCAAATAAGACA
259 TCGCAATAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * *
3003922 AACATGAATAGTAATGCTAATCCCTATTTATTTCAGGATTATGCACCATAAACATAGTCTTCTGA
324 AACATGAATAGTCATACTAATCCCAATTT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
* * * * *
3003987 TAAGGATACACGATACTAACGCTTTGGTTTC-ACAAGAAAGGCTTTCTTCCCACCAATTTTTGAT
388 TAAGGATACACGATATTGATGCTTTGGTTTCGA-AAGAAAGGCTTTCTTCCCCCCAATTTTTGAA
* * * *
3004051 AAGTCTAAGTTCGTTCTTCAAGT
452 AAGTCTAAGTTCATGCCTCAAAT
* * ** * *
3004074 GAGACAAACTTGGATTCTAGTAAAGATCTTCATTCATTTGGTGATTAGGCACTATAAACAAAATC
1 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACAAATTC
* * * * *
3004139 TCCTCATTAAGAAAAAAGATATTGATGATTTTCTATAGCAT-G-------------G--------
66 CCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAAACTTTTCTTTGCCCTATTT
* *
3004182 ------AAATCAAAGTTCATCCCCTGAAAAAA-ACAAGCATCGATTCTCATGACAGTCTCCACTA
131 TCCTTAAAATCAAAGTTCAT-CCCTTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCAC-A
*
3004240 TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAAGATACATGA-ATTGATG-TTTGGTG
194 TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * * * * * * *
3004303 CCGTAATAAAGGCTTTTCTTTCAATTC-TTTTTGATAGAATCAAAGGTTGTCTCTCAAGTAAGAC
259 TCGCAATAAAAGCTTTTCTTTCCA-CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
** * *
3004367 AAACATGAATAGTCAGGCTAATCCCAATTTATTTTAGGATTAGGCACCATAAATATAGTCTTCTC
323 AAACATGAATAGTCATACTAATCCCAATTT-TTTCAGGATTAGGCACCATAAACATAGTCTTCTC
* *
3004432 ATAAGGATACACGATATTGATGCTTTAGTTTCAAAAGAAAGGCTTTCTTCCCCCCAATTTTTGAA
387 ATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGAA
*
3004497 AAGTCTAAGTTCAAGCCTCAAAT
452 AAGTCTAAGTTCATGCCTCAAAT
* * * * * **
3004520 TAGACAAATATGGATTCTAGTAATGATCTTCATTAATTTTATAATTAGGCACTGTAAACATGTTC
1 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACAAATTC
* * * *
3004585 CCCTTATTAGGATAAATGATATTAATGATTTTCCCTTA-CATGGAAACCTTTTCTTTGCCCTATT
66 CCCTCATTAGGATAAATGATATTGATGATTTTCTC-TAGCATGGAAAACTTTTCTTTGCCCTATT
* * *
3004649 TTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGATAAGCATCGACTCTCGTGACAGTCTCCACTA
130 TTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCAC-A
* * ** * *
3004714 TTTTCAAGATTGGGAACCAAGAACATATTCTCTTCACCAAGATACAGGACATTGATGCTTTGGTG
194 TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * * ** * * *
3004779 TCACAAGAAAAGCTTTTCTTTCCACCGTTTTTCCTAGAATTAATGTTTGTCAT-TTAAATAAGTC
259 TCGCAATAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTC-TCTTAAATAAGAC
* *
3004843 AAACATGAATAG-CAAAACTAAATCCCCAATTATTTT-AGGATTGGGCACCATAAACATAGTCTT
323 AAACATGAATAGTC-ATACT-AAT-CCCAATT-TTTTCAGGATTAGGCACCATAAACATAGTCTT
* * * * * * * *
3004906 TTCATAATGATATACGATATTGACGCTTTGGTATCGCAAGAAAGGCTTTCTTCACCTCAATTTTT
384 CTCATAAGGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCCCCAATTTTT
3004971 GAAAAGTCTAAGTTCATGCCTCAAAT
449 GAAAAGTCTAAGTTCATGCCTCAAAT
* * * * * *
3004997 AAGACAAACATTGATTCTAGTATTCATCTTCATTCATTTCGTGATTAGGCAATGTAAACAAATTC
1 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACAAATTC
* *
3005062 CTCTAATTAGGATAAATGATATTGATGATT
66 CCCTCATTAGGATAAATGATATTGATGATT
3005092 AGGATACATG
Statistics
Matches: 2841, Mismatches: 455, Indels: 166
0.82 0.13 0.05
Matches are distributed among these distances:
446 287 0.10
447 97 0.03
448 9 0.00
458 1 0.00
460 1 0.00
462 110 0.04
463 213 0.07
464 61 0.02
465 3 0.00
466 3 0.00
467 1 0.00
471 6 0.00
472 277 0.10
473 112 0.04
474 121 0.04
475 606 0.21
476 514 0.18
477 408 0.14
478 10 0.00
479 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (474 bp):
GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACAAATTC
CCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAAACTTTTCTTTGCCCTATTT
TCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACATT
TTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
GCAATAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
CATGAATAGTCATACTAATCCCAATTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAA
GGATACACGATATTGATGCTTTGGTTTCGAAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGT
CTAAGTTCATGCCTCAAAT
Found at i:3005092 original size:22 final size:22
Alignment explanation
Indices: 3005067--3005110 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
3005057 AATTCCTCTA
*
3005067 ATTAGGATAAATGATATTGATG
1 ATTAGGATAAATGACATTGATG
*
3005089 ATTAGGATACATGACATTGATG
1 ATTAGGATAAATGACATTGATG
3005111 CTTTGGTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.34
Consensus pattern (22 bp):
ATTAGGATAAATGACATTGATG
Found at i:3006386 original size:475 final size:474
Alignment explanation
Indices: 3005089--3006668 Score: 2012
Period size: 476 Copynumber: 3.3 Consensus size: 474
3005079 GATATTGATG
* * * * * *
3005089 ATTAGGATACATGACATTGATGCTTTGGTGCCGTAA-CAAAGGTTTTTCCTTCAATCATTTTTTA
1 ATTAGGATACATGACATTGATGCTTTGGTGACGCAATTAAAGGCTTTTCTTTCAATCATTTTTGA
* * * * *
3005153 TTGAATGAAAGTTTGTCTCTTAAATAAGACAAACATGGATAGTCACACTAATCCTCATTCTTTTC
66 TAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCC-CATTCTTTTC
*
3005218 AGGATTAGGCACCATTAACATGGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCCTA
130 AGGATTAGGCACCATTAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCC-A
* **
3005283 AGAAAGGCTTTTTTCCCCCTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAATGTG
194 AGAAAGGCTTTTTTCCCCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * * * * * * *
3005348 GATTTTAGCAATGATCTTCATACAATTCGTGATTAGGCACAGTAAAGACATTCCCTCCGCTAGGA
259 GATTCTAGAAATGATCTTCTTTCAATTCATGATTAGGCACTGTAAACACATTCCCTCCACTAGGA
* * *
3005413 TAAATGATATTAATGATTTTCTCTAGCATGGAAACCTTTTTTTTACTCT-ATTTTCCTTAAAATC
324 TAAATGATATTAATGATTTTCTCTAGCATGGAAATCTTTTCTTTGC-CTAATTTTCCTTAAAATC
* *
3005477 AAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTCGTGACAGTCCCCACTATTTTCAAGATTG
388 AAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTCGTGACA-TCTCCACTCTTTTCAAGATTG
*
3005542 GGAACCAAGAACACATTCCCTTT
452 GGAACCAAGAACACATTCCCTTC
*
3005565 ATTAAGATACATGACATTGATGCTTTGGT-ACCGCAATT-AAGGCTTTTCTTTCAA-CGATTTTT
1 ATTAGGATACATGACATTGATGCTTTGGTGA-CGCAATTAAAGGCTTTTCTTTCAATC-ATTTTT
* **
3005627 GATAGAATCAAATTTTGTCTCTCAAATAAGATGAACATGAATAGTCATACTAATCCCTATTCTTT
64 GATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCC-ATTCTTT
* *
3005692 TCAAGATTAGGCACCATTAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTG
128 TCAGGATTAGGCACCATTAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGG-TTTC
** *
3005757 CAAGAAAGGCTTTTTTCCTTCTAGTTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
192 CAAGAAAGGCTTTTTTCCCCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
3005822 TGGATTCTAGAAATGATCTT-TATTCAATTCATGATTAGG-AATAGTAAACACATTCCCCCCACT
257 TGGATTCTAGAAATGATCTTCT-TTCAATTCATGATTAGGCACT-GTAAACACATTCCCTCCACT
* * *
3005885 AGGATAAATGATATTAATGATTTTCTCCAGCATGTAAATCTTTTCTTTGCCTAATTTTGCTTAAA
320 AGGATAAATGATATTAATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCTAATTTTCCTTAAA
* * * * * *
3005950 ACCAACGTTCATCCCATGGAAAAGAAAAGCATCGATTCTCGTGACATTCTCCACTCCTTTCAAGA
385 ATCAAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTCGTGACA-TCTCCACTCTTTTCAAGA
*
3006015 TTGCGAACCAAGAACACATTCCCTTC
449 TTGGGAACCAAGAACACATTCCCTTC
* * * * *
3006041 ATTAGGATACAGGACATTGACGCTTTGGTGACACAATTAAA-GCTTTTCTTTCTATCATTTATGA
1 ATTAGGATACATGACATTGATGCTTTGGTGACGCAATTAAAGGCTTTTCTTTCAATCATTTTTGA
* * *
3006105 TAGACTCAAAGTTTGT-TACTCAAATAAGATAAACACGAATAGTCATACTAATCCCATTCTTTTC
66 TAGAATCAAAGTTTGTCT-CTCAAATAAGACAAACATGAATAGTCATACTAATCCCATTCTTTTC
** * * * * ** *
3006169 AGGATTAGGCACCAAAAACATAATCTTCTCATAAGGAAAAATGATATTGACCCTTTCGTTTCACA
130 AGGATTAGGCACCATTAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC-CA
* * * *
3006234 AGAAAGGCTTTTTTCCCCCCAATTTTTGAAAAGTCTAAATTCGTGCCTCAAACGAGACAAACAAG
194 AGAAAGGCTTTTTTCCCCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * * *
3006299 GATTCTAGTAATGATCTTCTTTC-ATTCCATGATTAGGCACTGTAAACACATTCCTTTCATTAGG
259 GATTCTAGAAATGATCTTCTTTCAATT-CATGATTAGGCACTGTAAACACATTCCCTCCACTAGG
* * * * *
3006363 ATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTGGCCCAATTTTTCTTAAAATT
323 ATAAATGATATTAATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCTAATTTTCCTTAAAATC
*** **
3006428 AAAGTTCATATGTTGAAAAAGATAAGCATCGATTCTCAAGACCATCTCCACTCTTTTCAAGATTG
388 AAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTCGTGA-CATCTCCACTCTTTTCAAGATTG
* * *
3006493 GGAGCCAAGAGCACATTCCCATC
452 GGAACCAAGAACACATTCCCTTC
* * * * * * *
3006516 ATTAGGATACATGATATTGATGGTTTGGTGTCGC-GTTAAAGGCTTTACTTTCAACCGTTTTTGA
1 ATTAGGATACATGACATTGATGCTTTGGTGACGCAATTAAAGGCTTTTCTTTCAATCATTTTTGA
* * * *
3006580 TAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAATAGTCATACCAATCCCCTTTATTTTC
66 TAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAAT-CCCATTCTTTTC
* ** *
3006645 AAGATTACACACCATGAACATAGT
130 AGGATTAGGCACCATTAACATAGT
3006669 TTCGAAAGAA
Statistics
Matches: 952, Mismatches: 132, Indels: 40
0.85 0.12 0.04
Matches are distributed among these distances:
474 11 0.01
475 391 0.41
476 542 0.57
477 8 0.01
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (474 bp):
ATTAGGATACATGACATTGATGCTTTGGTGACGCAATTAAAGGCTTTTCTTTCAATCATTTTTGA
TAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCATTCTTTTCA
GGATTAGGCACCATTAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCCAAG
AAAGGCTTTTTTCCCCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGA
TTCTAGAAATGATCTTCTTTCAATTCATGATTAGGCACTGTAAACACATTCCCTCCACTAGGATA
AATGATATTAATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCTAATTTTCCTTAAAATCAAA
GTTCATCCCTTGAAAAAGATAAGCATCGATTCTCGTGACATCTCCACTCTTTTCAAGATTGGGAA
CCAAGAACACATTCCCTTC
Found at i:3009226 original size:475 final size:474
Alignment explanation
Indices: 3006675--3011385 Score: 4583
Period size: 475 Copynumber: 10.0 Consensus size: 474
3006665 TAGTTTCGAA
* * * * ** * * *
3006675 AGAAAGGCTTTCTTCCCCCCAAATTTTGTATAGTCTGCGTTCGTGCCTCAAAAGAGACAAACCTT
1 AGAAAGGCTTTCTT-CCCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * * * * * * *
3006740 GATTCTAGTAATAATCTTCTTTCATTTTGTGTTTAGGCATTGTAAACACACTCTCCTCATTAGGA
65 GATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCGCCTCATTAGGA
** * * * * * * * * *
3006805 TAACGGATATTGAAGTTTTTCCCTTGTATGGAAATCATTTCTTTGCCCAATTTACATTAAAATCA
130 TAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * ** ** * *
3006870 AAGTTCATCCCGTGAAAAAGACAAGCATCAATTCTCGGGGCAATCTCCAC-CGTTTTCAAGATTA
195 AAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGATAGTCTCCACTC-TTTTCAAGATTG
* * * * * *
3006934 GGAACCAAGAACACATTCTCTTC-TTGAGGATACATGACAATGATGCTTTGGTCTTA-AAAGAAA
259 GGAACAAAGAACACATTCCCTTCATT-AGGATACATGACATTGATGCTTTGGT-GTAGCAATAAA
* * * **
3006997 AGCATTTCTTTCCATC-------------TCAAAGTTTGTCACTTAAATAAGACCGACATGAATA
322 AGCTTTTCTTTCCATCGTTTTTAATAGAATCAAAGTTTATCACTCAAATAAGACAAACATGAATA
* * * * *
3007049 GTCATACTAATCCCTATTCTTTCCAAGATTATGCACCATAAACA-AGTATTCTCATAA-G-----
387 GTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
**
3007107 -GAT-TTGATGCTTTGGTTTTGC
452 CGATATTGACACTTTGGTTTTGC
* * * *
3007128 AAGAAAGACTTTCTTCCCACTAATTTTTGGAAAGCCTAAGTTCGTGGCTCAAATGAGACAAACAT
1 -AGAAAGGCTTTCTTCCC-CTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
3007193 GGATTCTACTAATGATTTTCATTCATTTCGTGATTGGGCAC-AGTAAACACATTC-CCTTCATTA
64 GGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTA-TAAACACATTCGCC-TCATTA
* * *
3007256 GGATAAATAATATTGATGATTTTCTCTAGCATGGAAATCATTTCTTTGCCCTATTTTCCTTCAAA
127 GGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAA
* * * * * *
3007321 TAAAAGTTCATCCCTTGAAAAAGAGAAGCA-CTTATTCTCGTGACAGTCTCCACTCTTTTCATGA
192 TCAAAGTTCATCCCTTGAAAAAGACAAGCATC-GATTCTCATGATAGTCTCCACTCTTTTCAAGA
* ** *
3007385 TTGGGAACCAAGAACACATTCCCTTTTTTAGGATACATGACATTGATGCTTTGGTGTCGCAATAA
256 TTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTAGCAATAA
* * * * * * * * * *
3007450 ATGCTTTTGTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAAACAAACAAGACT
321 AAGCTTTTCTTTCCATCGTTTTTAATAGAATCAAAGTTTATCACTCAAATAAGACAAACATGAAT
* *
3007515 AGTCATACTAATCCCCATTCATTTCAGGATTAGGCACCATAAACATAGTCTTGT-A-AA-GATAC
386 AGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
** * *
3007577 ACGATATTGATGCTATAGG-TTGGC
451 ACGATATTGACACT-TTGGTTTTGC
* * * * * ** * * *
3007601 AAGAAAGGCTTTCTTTCCCCCAAATTTTGTAACGCCTCTGTTCGTGCCTCAAAGGAGAAAAACCT
1 -AGAAAGGCTTTC-TTCCCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * * * *
3007666 AGATTCTAGTAGTGATCTTCATTCATTTTGTGATTAGACACTATAAACACATAAACACATTCTCC
64 GGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCAC--T------ATAAACACATTCGCC
* * * * * *
3007731 TCGTTCGGAAAAATGATATTGATGATTTTCACCAGCATGGAAATCTTTTTTTTGCCCTATTTTCC
121 TCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCC
* *
3007796 TTAAAATCAAA-TTTATCCCTTGAAAAAGACAAGCATCGATTCT-AGTGATAGTCTCCACTATTT
186 TTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCA-TGATAGTCTCCACTCTTT
* * * * * * * * **
3007859 TCAAGATTAGGAACCAAGAACACATTCCTTTCATTACGATATATGACATTGATACTTTGCTATCC
250 TCAAGATTGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTAG
* * * * * *
3007924 CAATAAAAGCTTTTCTTT-CATCTATTTTTGATAGAACCAAAGTTTGTCTCTTAAATAAGACAAA
315 CAATAAAAGCTTTTCTTTCCATC-GTTTTTAATAGAATCAAAGTTTATCACTCAAATAAGACAAA
* ** *
3007988 CATGAATAGTCACACTAATCGTCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATA
379 CATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATA
* *
3008053 AGGATACACGATATTGACGCTTTGGTTTCGC
444 AGGATACACGATATTGACACTTTGGTTTTGC
* * * * *
3008084 GAGAAAGGCTTTCTTCCCCTCAATTTCTAAAAAGTCTAAGTTCATGCCTTAAATGAGATAAACAT
1 -AGAAAGGCTTTCTTCCCCT-AATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * * * *
3008149 GGATTATAGTAATGATCTTCATTCATTT-GATGAATAGACGCTATAAACACATTCCCCTCATTAG
64 GGATTCTAGTAATGATCTTCATTCATTTCG-TGATTAGGCACTATAAACACATTCGCCTCATTAG
* * * *
3008213 GATAAACGATATTGAAGATTTTCTCTAGCATGAAAATCTTTTTTTTGCCCTA-TTTCCTTAAAAT
128 GATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * * * * * *
3008277 CAAA-TTTATCCTTTGAGAAAGACAAGCATTGATTCT-AGTGACAGTCTCTACTCTTTTCAAGTT
193 CAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCA-TGATAGTCTCCACTCTTTTCAAGAT
* * * * *
3008340 TAGGAACCAAGAACACATTCGCTTCATTAGGATACATGACATTGATGCTTTGGTGCCA-TAATAA
257 TGGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TAGCAATAA
* * ** * * ** * * * *
3008404 AGGCTTTTCTTTCAATAATTTTTGATGGAATCAAAGTTCGTCTCTCACATCAGACAAATAAT-AA
321 AAGCTTTTCTTTCCATCGTTTTTAATAGAATCAAAGTTTATCACTCAAATAAGACAAA-CATGAA
* * * *
3008468 TAGTCATACTAATCCTCATTCCTTTCAGGATTAGGCACCATAAATATAGTCTTCTCATAAGGACA
385 TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
* **
3008533 CACGATATTGACGCTTT--CATT-C
450 CACGATATTGACACTTTGGTTTTGC
* * * ** *
3008555 ---CA--CATTC-GCCTATCAATTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATG
1 AGAAAGGCTTTCTTCCCCT-AATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * *
3008614 CATTATAGTAATGATCTTTATTCATTTCGTGATTAGGCAC-AGTAAACACATTC-CCTTCATTAG
65 GATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTA-TAAACACATTCGCC-TCATTAG
* * *
3008677 GATAAATGATGTTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTAAAGT
128 GATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* * ** * *
3008742 CAAAGTTCATCCCTTGAAAAAGATAAGCATCGATTTTTGTGATAGTTTCCACTATTTTCAAGATT
193 CAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGATAGTCTCCACTCTTTTCAAGATT
* * * *
3008807 GGGAACAAAGAACACATTCCCTTCGTTAGGATACATGACAGTGATGCTTTGGTGTCGCAATAAAG
258 GGGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTAGCAATAAAA
* *
3008872 GCTTTTCTTTCAATCGTTTTTAATAGAATCAAAGTTTATCTCTCAAATAAGACAAACATGAATAG
323 GCTTTTCTTTCCATCGTTTTTAATAGAATCAAAGTTTATCACTCAAATAAGACAAACATGAATAG
* * *
3008937 TCATATTAATCCCCATTCTTTTCAGGATTA-GTACCATAAACATAGTCTTCTCGTAAGGATACAC
388 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
*
3009001 AATATTGACACTTTGGTTTTGC
453 GATATTGACACTTTGGTTTTGC
* * * * *
3009023 ATGAAAGGCTTTCTTCCCCTCAATTTTTGAAAAGTCTAAGTTTGTGCGTGAAAAGAGACAAACTT
1 A-GAAAGGCTTTCTTCCCCT-AATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * * * **
3009088 GGATTCTTGTAATGATCTTCATTCATTTTGTGATTAGGCATTATAAAAACATTCGCCTTGTTAGG
64 GGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCGCCTCATTAGG
* * * * *
3009153 ATAAAGGATATTGATGATTTT-TCCTAGCGTAGAAATCGTTTCTTTGCCCTATTTTGCTTAAAAT
129 ATAAATGATATTGATGATTTTCT-CTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT
* *
3009217 CAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTTATAATAGTCTCCACTCTTTTCAAGATT
193 CAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGATAGTCTCCACTCTTTTCAAGATT
* * * * * * *
3009282 GGGAACCAAA-AACACATTCCCTTCTTTGGGATAGATGAAATTGATACTTTGGTCTAGCAAGAAA
258 GGGAA-CAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTAGCAATAAA
* * ** * *
3009346 AGCTTTTCTTTCCACCGTTTTTAATAAAATCAAAGTTTATCTTTTAAATAATACAAACATGAATA
322 AGCTTTTCTTTCCATCGTTTTTAATAGAATCAAAGTTTATCACTCAAATAAGACAAACATGAATA
** ** * *
3009411 GTCATACTAATCCTAATT-TTTTTGGGATTAGGCACCGTAAACATAGTCTTCTCATAAGGATATA
387 GTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* *** * * * *
3009475 CGAAATTGGTGCTTAGCTTTCGTA
452 CGATATTGACACTTTGGTTTTG-C
* * * * *
3009499 AGAAAGGCTTTCTTCCCACTAATTTTTGCAAAGTGTAAGTTCCTGCCACAAATGAGATAAACATG
1 AGAAAGGCTTTCTTCCC-CTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * * * * * *
3009564 GATTCTAGTAATAATCTTCATTCGTTTCGTGATTAAGCACTATAAACACATTCTCCACGTTAAGA
65 GATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCGCCTCATTAGGA
* * * * * * * *
3009629 TAAATGATATTTATGATTTACTTTTGCATAGAAATCTTTCCTTTGCCCTATTTTTCTTAAATTCA
130 TAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* ** * * * * * * * * * *
3009694 AAATGAATCCCTTGAATATGACAAACTTTGATTCTCGTAAAAGTCTCTATTCTTTTCAAGATTGG
195 AAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGATAGTCTCCACTCTTTTCAAGATTGG
* * * * *
3009759 GAACTAAGAACACATTCCTTTAATTAGGATACATGACATT-ATTTCTTTGGTGTAGCAGTAAAAG
260 GAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTAGCAATAAAAG
* * * * * * * *
3009823 CTTTTCTTTCCAACTTTTTTGATAGAATTAAAGTTTGTCACTGAAATAAGACAGACATAAATAGT
324 CTTTTCTTTCCATCGTTTTTAATAGAATCAAAGTTTATCACTCAAATAAGACAAACATGAATAGT
* * * *
3009888 CATACTAATCCCCATTCTTTTCAAGATTAGGCACTATAAACATAATCTTCTCTTAAAGG-TACAC
389 CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT-AAGGATACAC
*
3009952 GATATTGACAATTTGGTTTTTTG-
453 GATATTGACACTTTGG--TTTTGC
* * * * ** * * *
3009975 AGAAAAGCTTTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATACCTCATATGAGACAAACGTG
1 AGAAAGGCTTTCTTC-CCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * * * * ** *
3010040 GATTCTAGTAATAATCATCCTTCACTTCGTGATTAGGCACAATAAACACATTCTACACATTAGGA
65 GATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCGCCTCATTAGGA
**
3010105 TAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCTTTATTTTCCTTAAAATCA
130 TAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* * * ** * * * *
3010170 AAGTTCATCCTTTGAAAAGGACAAGCATCCATTCTTGTGACAATCTTCACTCTATTCAAGATTGG
195 AAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGATAGTCTCCACTCTTTTCAAGATTGG
* * * *
3010235 GAACGAAGAACACATTCCCTTCATTAGGATACATGACGTTGATGCTCTGGTCTAGCAATAAAAGC
260 GAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTAGCAATAAAAGC
* * * * * * *
3010300 TTTT-TGGTCCATCGTTTTTTATTA-AATCAAAGTTTGTCACTTAAATAAGGCAAATAAGAATAG
325 TTTTCT-TTCCATCG-TTTTTAATAGAATCAAAGTTTATCACTCAAATAAGACAAACATGAATAG
* *
3010363 TCATACTAAT-CCCATTCTTTT-AGGATTAGGCACCATAAACGTAGTCTT-TCATATGGATACAC
388 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
** ** *
3010425 --TATTGATGCTTTCATTTTAC
453 GATATTGACACTTTGGTTTTGC
** * * *
3010445 AAGAAAGGAATTCTTCCTCCTAATTTTTGGAAAGTCTAAGTTCATGCCTCAAATGAGATAAACAT
1 -AGAAAGGCTTTCTTCC-CCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * * * ** *
3010510 GGATTCTAGTGATTATCTTTATTCATGTCGTGATTAGGCACTATAAACACATTCGTTTCATTTGG
64 GGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCGCCTCATTAGG
* * *
3010575 ATAAATGATATTGATGATTTTCTCTAGCATGGAAACCTTTTCTTTGCCCAATTTTCCATAAAATC
129 ATAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATC
* ** * * * *
3010640 AAAGTCCATCCAATGAAAGAGACAAGCATCGATTCTCATGACAGTCTCCATTCTTTTCAACATTG
194 AAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGATAGTCTCCACTCTTTTCAAGATTG
* * *
3010705 GGAACCAATAACACATTCCCTTCACTAGGATACATGACATTGATGCTTTGGTGTCA-CAATAAAA
259 GGAACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT-AGCAATAAAA
* * * * *
3010769 GCTTTTGTTTCCA-CTGTTTTTGATAGAATCAAAGTTTGTCACTCCAATAAGACAAACTTGAATA
323 GCTTTTCTTTCCATC-GTTTTTAATAGAATCAAAGTTTATCACTCAAATAAGACAAACATGAATA
* * * * *
3010833 GTCATACCAATCCCCTTTCTTTTTAGGATTACGCACCATGAACATAGTCTTCTCATAAGGATACA
387 GTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* **
3010898 CGATAATGATGCTTTGG--TT-C
452 CGATATTGACACTTTGGTTTTGC
* * * * * * * *
3010918 -G--AGTCTTCTCATACCTTAATTTTTGTAAAGTCTAAGCTCGTGTCTCAAATGAGACAAACCTG
1 AGAAAGGCTT-TCTTCCCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * * * *
3010980 GATTCAAGTAATGATCTTCATTCATTTTGTGATTAGGCACTGTCAACACATTCCCCTCATTAGGA
65 GATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCGCCTCATTAGGA
* * * *
3011045 TAAATGATATTGATGGTTTTCTCTAGCATGGAAGTCTTTTCTTTACCTTATTTTCCTTAAAATCA
130 TAAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA
* *
3011110 AAGTTCATCCCTTGAAAAAGACAACCATCGATTCTCATGATAGTCTACACTCTTTTCAAGATTGG
195 AAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGATAGTCTCCACTCTTTTCAAGATTGG
* * *
3011175 GAACCAAA-AA-ACATTCCCTTCATTAGGATAGATGACATTGATGATTTGGTGTCA-TAATAAAA
260 GAA-CAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT-AGCAATAAAA
* * ** * * *
3011237 GCTTTTATTTCCATCGTTTTTGAGCGACTCAAAGATTGA-CACTAAAATAAGACAAACATGAATA
323 GCTTTTCTTTCCATCGTTTTTAATAGAATCAAAG-TTTATCACTCAAATAAGACAAACATGAATA
* * * * * *
3011301 GTCATACTAATCCCTATTCCTTTCAAGATTAGGCACCAAAAACATTGTCTTCTCATAAGGATATA
387 GTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* *
3011366 TGATATTGACACGTTGGTTT
452 CGATATTGACACTTTGGTTT
3011386 CTCATAAGGA
Statistics
Matches: 3519, Mismatches: 631, Indels: 198
0.81 0.15 0.05
Matches are distributed among these distances:
453 7 0.00
454 266 0.08
455 3 0.00
463 3 0.00
464 141 0.04
465 63 0.02
466 186 0.05
467 72 0.02
468 171 0.05
469 223 0.06
470 17 0.00
471 335 0.10
472 20 0.01
473 127 0.04
474 310 0.09
475 779 0.22
476 380 0.11
477 13 0.00
478 4 0.00
479 2 0.00
480 203 0.06
481 80 0.02
482 15 0.00
483 99 0.03
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (474 bp):
AGAAAGGCTTTCTTCCCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
ATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCGCCTCATTAGGAT
AAATGATATTGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAA
AGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCATGATAGTCTCCACTCTTTTCAAGATTGGG
AACAAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTAGCAATAAAAGCT
TTTCTTTCCATCGTTTTTAATAGAATCAAAGTTTATCACTCAAATAAGACAAACATGAATAGTCA
TACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAT
ATTGACACTTTGGTTTTGC
Found at i:3011393 original size:34 final size:34
Alignment explanation
Indices: 3011342--3011416 Score: 98
Period size: 34 Copynumber: 2.2 Consensus size: 34
3011332 GGCACCAAAA
* * *
3011342 ACATT-GTCTTCTCATAAGGATATATGATATTGAC
1 ACATTGGT-TTCTCATAAGGATAGACGACATTGAC
*
3011376 ACGTTGGTTTCTCATAAGGATAGACGACATTGAC
1 ACATTGGTTTCTCATAAGGATAGACGACATTGAC
3011410 ACATTGG
1 ACATTGG
3011417 CTTTGCAAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 33 0.94
35 2 0.06
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (34 bp):
ACATTGGTTTCTCATAAGGATAGACGACATTGAC
Found at i:3011799 original size:21 final size:21
Alignment explanation
Indices: 3011766--3011806 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
3011756 CTAAGTAAAA
3011766 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
3011787 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
3011807 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:3011871 original size:20 final size:19
Alignment explanation
Indices: 3011846--3011916 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
3011836 ACCCTGAAAA
3011846 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
3011866 GTATCGATACAAATTGCAT
1 GTATCGATACACATTAAAT
**
3011885 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
3011906 GTATCGATACA
1 GTATCGATACA
3011917 GGACATTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:3011969 original size:53 final size:53
Alignment explanation
Indices: 3011886--3012022 Score: 247
Period size: 53 Copynumber: 2.6 Consensus size: 53
3011876 AAATTGCATA
3011886 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
3011940 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
3011993 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
3012023 TTGGAAGTAG
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
53 67 0.83
54 14 0.17
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:3012088 original size:21 final size:22
Alignment explanation
Indices: 3012055--3012096 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
3012045 TTCACTGTTC
3012055 ATCACTATTCATGTATCGATAT
1 ATCACTATTCATGTATCGATAT
3012077 ATCACT-TTCATGTATCGATA
1 ATCACTATTCATGTATCGATA
3012097 CAACACTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40
Consensus pattern (22 bp):
ATCACTATTCATGTATCGATAT
Found at i:3012103 original size:21 final size:22
Alignment explanation
Indices: 3012057--3012109 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
3012047 CACTGTTCAT
* *
3012057 CACTATTCATGTATCGATATAT
1 CACTATTCATGTATCGATACAA
3012079 CACT-TTCATGTATCGATACAA
1 CACTATTCATGTATCGATACAA
*
3012100 CACTGTTCAT
1 CACTATTCAT
3012110 AGGTCACTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (22 bp):
CACTATTCATGTATCGATACAA
Found at i:3012139 original size:23 final size:23
Alignment explanation
Indices: 3012099--3012145 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
3012089 TATCGATACA
* * *
3012099 ACACTGTTCATAGGTCACTGTTC
1 ACACTGTTCACAGATCACTATTC
*
3012122 ACACTGTTCACATATCACTATTC
1 ACACTGTTCACAGATCACTATTC
3012145 A
1 A
3012146 TGTATCGTTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.28, C:0.28, G:0.11, T:0.34
Consensus pattern (23 bp):
ACACTGTTCACAGATCACTATTC
Found at i:3012217 original size:13 final size:13
Alignment explanation
Indices: 3012199--3012224 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3012189 ACATATTTGT
3012199 GTGTATCGATACA
1 GTGTATCGATACA
3012212 GTGTATCGATACA
1 GTGTATCGATACA
3012225 TCATAAATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (13 bp):
GTGTATCGATACA
Found at i:3014426 original size:476 final size:475
Alignment explanation
Indices: 3013028--3020958 Score: 8870
Period size: 475 Copynumber: 16.6 Consensus size: 475
3013018 CTCACAATAC
* * *
3013028 TGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTAAAAATCAAAGATCATCC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * *
3013093 CTCGAAAAAG---A-TATCGATTCTTGAGACAGCCTCCACTCTTTTCAAGATTGGGAACTAAGAA
66 CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
* * * * * * *
3013154 CACATTCCCTTCGTTAAGATACAAGACATTTATGCTTTTGTGTCACAATAAAGGCTTTTCTTT-C
131 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCC
** * * *
3013218 ATCCGTTTTGATAGAATCAAAGTTTGTCTCTCAAATAGGATAAACATGAATAGTCATATTAATCC
196 ATCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCC
* * *
3013283 CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTCCTCATAAGGATACAGGATATTGATGCT
261 CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCT
* ** * * * *
3013348 TTGGTTTTGCAAGAAAGGCTTTCTTTACCCTTAGTTTTGAAATGTCTAAATTTGTGCCTCAAATG
326 TTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAATG
* * * *
3013413 AGACACACATTGATTCTAGTAATGATCTTTATTCATTTCATGATTACGCACAGTAAACACATTCC
391 AGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATTA-GCACTGTAAACACATTCC
* *
3013478 CCTCATTGGGATAATTGATAT
455 CCTCATTAGGATAAATGATAT
* * * * *
3013499 TGATGATTTTCTCTAACAAGGAAATATTTTCTTTGCCCTATTTTTCTTAAAATCAAAGATCATCC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* ** ** * *
3013564 ATCAAAAAAGACAAGCATCGATTCTTGCAACAGTCTCCACTGTTTTCAAGATTTGGAACCAAGAA
66 CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
* * * * * * *
3013629 CCCATTCCCTTCATTAAGATACATGGCATTGCTGCTTTGGTGTCACAATAAAGGCTTTT-TTTTC
131 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCC
* * * * *
3013693 ATCTGTTTTTGATAGAATCAAAG-TT-TCTCTCAAATATGGCAAATATGAATAGTTATACTAA-C
196 ATC-ATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATC
* * * *
3013755 CCCTAATCTTTTTAAGATTAGGCACCATAAACATAGTCTCCTCATAAGGATACAGGATATTGACG
260 CCC-ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* * *
3013820 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTTAGTTTTGAAAAGTCTAAATTCGTACCTCAAA
324 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
* * * *
3013885 TGAGACACACATTGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCA-TCGTAAACACAT
389 TGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATTA-GCACT-GTAAACACAT
*
3013949 TCCCTTCATTAGGATAAATGATAT
452 TCCCCTCATTAGGATAAATGATAT
*
3013973 TGATGATTTTCTCTCGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * * *
3014038 CTTGAAAAAGATAAGCATTGATTCTCGTGATAGTCTCCACTCTTTTCTAGATTGGTAACCAAGAA
66 CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
*
3014103 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCC
131 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCC
* * * * * * *
3014168 ATCATTTTTGATAGACTCGAAGATTGACACT-AGAATAAGACAGACATGAATAGTCATACTTATC
196 ATCATTTTTGATAGAATCAAAGTTTGTCTCTCA-AATAAGACAAACATGAATAGTCATACTAATC
* * * *
3014232 CCCATTCTTTTCAGGATTAGGCACCAAAAACATAGTCTTCTGATAAGGATATACGATATTGACGC
260 CCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGC
* *
3014297 TTTGGTTTCACAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCATGCCTCAAAT
325 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * *
3014362 AAGACAAACATGGATTCTACTAATGATCTTTATTCATTTTGTGATAATGCGCTATAAACACATTC
390 GAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATTA-GCACTGTAAACACATTC
* *
3014427 TCCTCATTAGGATAAATGACAT
454 CCCTCATTAGGATAAATGATAT
* * * * * *
3014449 TAATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCTATTTCCCTTAAAATCAGAA-TTCATC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCA-AAGTTCATC
* * * * * * *
3014513 CCTT-AAATATGACGAGCTTTGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAG
65 CCTTGAAA-AAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAG
* * * ** *
3014577 AACACATTCGCTTTATTAGGATACATGACATTGATGCTTCGGTGTCATAATAAATGCTTTTCTTT
129 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTT
* *
3014642 CC-TCCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAGCATGAGTAGTCATACTAA
194 CCAT-CATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAA
* * * * * * * *
3014706 TCCCCTTTCTTTTCAAGATTATGCACCATGAACATAGTTTTCTCGTTAGGATACACGATAATGAT
258 TCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGAC
* * * * * *
3014771 ACTTTGGTTTCACAAGAAAGGCTTTTTTCCCCCCAATTTTTGTAAAA-TCTAAGTTCGTGCTTCA
323 GCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTG-AAAAGTCTAAGTTCGTGCCTCA
* * **
3014835 AATGAGACAAACCTGGATTCTAGTAATGA---TT-TTC-TTTC---A--A--A-TG-AGACATTT
387 AATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATTAGCACTGTAAACA-CA
*
3014886 TTCTCCTC---AGGATAAATGATAT
451 TTCCCCTCATTAGGATAAATGATAT
* * * * *
3014908 TGATGATTTACTTTAGCATGAAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCT
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * * * *
3014973 CGTGAAAAAGATAGGCATCGATTCTCGTCG-TAGTCTCCACCCTTTTCAAGATTGGGAACCAATA
66 CTTGAAAAAGACAAGCATCGATTCTTGT-GACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGA
* * *** ** *
3015037 ACACATTCCCTTCCTGAGGATACATGACATTGATGCTTTGCCCTCAAAAGAAAAGCTTTTCTTTC
130 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTC
* * * * *
3015102 CTTCGTTTTTGATGGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATC
195 CATCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATC
* ** * *** *
3015167 CCCATTCTTTCCGTGATTCGGCACCATAAACATAGTCTTCTCATAAGGATATGTGATATTGAAGC
260 CCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGC
* * * * * * *
3015232 TTTGGTTTCGCAAGGAGGGCTTTCTTCACACTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAGT
325 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAAT
* * *
3015297 GAGACAAACACT-GATTCTAGTTATGAT-TTTCATTCATTTAGTGATTAGGCACTATAAACACAT
390 GAGACAAACA-TGGATTCTAGTAATGATCTTT-ATTCATTTCGTGATTA-GCACTGTAAACACAT
3015360 TCCCCTCATTAGGATAAA-GATTAT
452 TCCCCTCATTAGGATAAATGA-TAT
* * * * * * *
3015384 TGATGATTTTCTCTTGCATGGAAATCATTTCTTTGCCCTATTTTTCGTAAAATCAAAATTCGTCA
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * *
3015449 CTTGGAAAAGACAAGCATTGATTCTTGTGACA--CTCCACCCTTTTCAAGATTGGGAACCAAGAA
66 CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
* * * * * * *
3015512 CACATTCTCTTCTTTAGGGTACAAGACATTGATGCTTTGTTGTCGCAATGAATGCTTTTCTTTAG
131 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTT--
* * * **
3015577 CC--CGTTTTTGACAGAATCAAAGTTTGTCTCTCAAATACGACAAATGTGAATAGTCATACTAAT
194 CCATCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAAT
*** * * *
3015640 CCCCAAGGTTTTCAAGATTAGGTACCATAAACATAGTCTTCTCATAATGATACACGATATTGATG
259 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* * *
3015705 CTTTGGTTTTGTAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
324 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
** * * * *
3015770 TGAGACAAACATGGATTCCGGTAATGATCCTCATTCATTTCGTGATTAGGCACTATAAATACATT
389 TGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATTA-GCACTGTAAACACATT
* * * *
3015835 CACCTTATTTGGATAAATGAAAT
453 CCCCTCATTAGGATAAATGATAT
* * *
3015858 TGATGATTTTCTCTAGCTTGAAAAAT-TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAAC
1 TGATGATTTTCTCTAGCATG-GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
* * ** *
3015922 CCTTGAAAAGGATAAGCATCGATTCTCATGACAGTCTCCACTCTTTTCAAGATTGGGAACAAAGA
65 CCTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGA
* * * * *
3015987 ACACATTCTCTTCATTAGGATAGATGACATTGATGCTTTCGTGTCACAATAAAGGCTTTTCTTTC
130 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTC
* * * *
3016052 AACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAACTAAGACAAACATGAATAGTCATACTAATC
195 CATCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATC
* * * *
3016117 CCCATTCTTTTCAGGATTAAGCACCATAAACATAGT-TCTCTCATAAAGATACACGATGTTGACG
260 CCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCT-TCTCATAAGGATACACGATATTGACG
* * * * *
3016181 -TTTAAGTATT-GCAAAAAAGGATTT-TGTCACCCC-AATTTTTGAAAAGTCTAAGTTCTTGCCT
324 CTTT-GGT-TTCGCAAGAAAGGCTTTCT-TC-CCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCT
* * * *
3016242 GAAATAAGACAAACATGGATTCTAGTAATGAAC--T-TT-ATTTCATGATTAGGCACTGTAAACA
385 CAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATTA-GCACTGTAAACA
** ** *
3016303 CATTAACCTTGTTAAGATAAAT-AGTAT
449 CATTCCCCTCATTAGGATAAATGA-TAT
* * * * * * *
3016330 TGATGATTCTCTCTAAG-ATGAAAATTTTTTCTTTGTCATATTTTCCTTTAAATCAGAGTTCATC
1 TGATGATTTTCTCT-AGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
** * * * * *
3016394 TTTTGAAAATGACAAGCGTAGATTCTCGTGACAATCTCCACTCTTTTCAAGATTGGGAACCAAGA
65 CCTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGA
* * ** * *
3016459 ACACATTCCCTTCATTAGGATATAAGACATTGATGCTTTAATGTCGCAATAAAGGCTATTCTTTC
130 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTC
* * * * * * **
3016524 AACCGTATTTGATAAAATCAAAGTTTGTCTCTCAAATAAGAGATTCATGAATAGTCATACTAATC
195 CATCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATC
* * * * ** * * *
3016589 CCCATTATTTTTAGGATTAAGCACCATAAATGTAGTCTTCTTAAAAAGATACACGATATTGATC-
260 CCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGA-CG
* * * * * ** *
3016653 CTTTGGTATT-GCAAGAAAGGATTTCTTCACCCAAATTTTTGGAAAGTCTAAGTTTTTGCCTAAA
324 CTTTGGT-TTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAA
* * * * ** *
3016717 ATGAGACAAACATGGATTCTAGT-ATGGATCATCATTCAATTCATGATTAAGCACAATAAACATA
388 ATGAGACAAACATGGATTCTAGTAAT-GATCTTTATTCATTTCGTGATT-AGCACTGTAAACACA
* * * *
3016781 TTCCCTTCACTAGAAAAAATGATAT
451 TTCCCCTCATTAGGATAAATGATAT
* * * *
3016806 TGATGATTTTCTCTAGCCTGAAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAATTCATCC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * *
3016871 CTTGAAAAAGACAAGCATTGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTAGG-ACCAAGAA
66 CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
* * *
3016935 CACATTCCCTTCTTTAAGATACATGACATTGATGCTTCGGTGTCGCAATAAAAGCTTTTCTTTCC
131 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCC
* * * * * * * *
3017000 ATTATTTTTGATAGACTCAAA-TATTGACACTAAAATAAGGCAAACATGAACAGTCATATTAATC
196 ATCATTTTTGATAGAATCAAAGT-TTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATC
* * * * * *
3017064 CCCATTTTTTTCAGGATTAGGCACCATAAACATAGTTTTCTCAGAAGTATACAGGATATTGACGC
260 CCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGC
* * * *
3017129 TTTGGTTTCGTAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTTAAAT
325 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAAT
* * *
3017194 GAGACACACATGGATTCTAGTAATGATCTTAATTCATTTCGTGATTAGGCACTGTCAACACATTC
390 GAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATTA-GCACTGTAAACACATTC
3017259 CCCTCATTAGGATAAATGATAT
454 CCCTCATTAGGATAAATGATAT
* * *
3017281 TGATGATTTTCTCTAGCGTGGAAGTCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * *
3017346 CTTGAAAAAGACAACCATCGATTCGTGTGATAGTCTACACTCTTTTCAAGATTGGGAACCAAAAA
66 CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
* * * * *
3017411 CGCATTCCCTTCATTAGGATACATGACATTGATGATTTGGTGTCGTAATAAAAACTTTTCTTCCC
131 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCC
** * * * * * * *
3017476 ATCGGTATTGATCA-ACTCAAAGATTGACACTAAAATAAGACAAACATGAATAGTCACACTAATC
196 ATCATTTTTGAT-AGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATC
* * * * *
3017540 CCTATTCTTTTCAAGATTAGGCACCAAAAACATTGTCCTT-TCATAAGGATATACGATATTGATG
260 CCCATTCTTTTCAAGATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACACGATATTGACG
* *
3017604 CGTTGGTTTCTCATAAGGATATACGATATTGACATGTTGGTTTTGCAAAAAAAGCTTTCTTCCCC
324 CTTTGG-TT-TC-----G-----C-------A-A----------G----AAAGGCTTTCTTCCCC
* * *
3017669 CCAAGTTTTGAAAAGTCTAAGTCCGTGCCTCAAATGAGACAAACATGGATTGTAGTAATGATCTT
355 CTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* * *
3017734 CATTCATTTCGTGATTACGCACTATAAACACATTCCCCTCATTAGGATAGATGATAT
420 TATTCATTTCGTGATTA-GCACTGTAAACACATTCCCCTCATTAGGATAAATGATAT
* * * * *
3017791 CGATGATTTTTTCTAACATGGAAATATTTTCTTT-CCACTATTTTCCTTAAAATCAAAGATCATC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCATC
* ** * ** * * **
3017855 CCTCGAAAAAGATGAGCGTCGACACTTATGACAGTTTCCACTCTTTTCAAGACCGGGAACCAAGA
65 CCTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGA
* * * * * * *
3017920 ACACATTTCCTTCGTTAAGATACATGACATTTATGCTTTTGTGTCACAATAAAGGCTTTTC-TTC
130 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTC
* * * * *
3017984 CATTC-GTTTTGATAGAATTAAAGTTTGTCTCTCAAATAAGGCAAACAAGAATAGTCATACAAAT
195 CA-TCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAAT
* * * *
3018048 CCCCATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTCCTCATAAGGATACAGGATATTGATG
259 CCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACG
* * *
3018113 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTTAGTTTTGAAAAGTCTAAATTCGTGCCTTAAA
324 CTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAA
* * *
3018178 TGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTCATGATTAGGCACTGTAAACACATT
389 TGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATTA-GCACTGTAAACACATT
3018243 CCCCTCATT-GAGATAAATGATAT
453 CCCCTCATTAG-GATAAATGATAT
** * * * * * *
3018266 TGATGATTTTCTCTAATAAGGAAATATTTTCTATACCTTATTTTCCTTAAAATCAAAGATCATCC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * ** * * * *
3018331 ATTAAAAAAGACAAGCATCGATTCTTGCAACAGTCTCCATTGTTTTCAAGATTTGGAACCAAAAA
66 CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
* * * * *
3018396 CCCATTCCCTTCATTAAGATACATGGCATTGATGCTTTGGTGTCACAATAAAGGCTTTTCTTT-C
131 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCC
* *
3018460 ATCCATTTTTGATAGAAT-AAAGTTTGTCTCTCAAATAAGGCAAATATGAATAGTCATACTAATC
196 AT-CATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATC
* * * * * * *
3018524 CCTAATCTTTTTAAGATTAGGCACCATAAACATAGTCTCCTCATAAGGGTATAGGATATTGACGC
260 CCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGC
* * * *
3018589 TTTGGTTTTGCAAGAAAGGCTTTCTTCCCCCTTAGTTTTGAAAAGTCTAAATTCGTACCTCAAAT
325 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * *
3018654 GAGACACACATTGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGAACCGTAAACACATTC
390 GAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATTA-GCACTGTAAACACATTC
*
3018719 CCTTCATTAGGATAAATGATAT
454 CCCTCATTAGGATAAATGATAT
* * * *
3018741 TAATGATTTGCTCTCGCATGGAAATTTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * *
3018806 CTTGAAAAAGATAAGCATTGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTAGGAACCAAGAA
66 CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
* * * *
3018871 CCCATTCCCTTCATTAGGATACCTGACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTATCC
131 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCC
** * * * * * * *
3018936 ATCATTTTTGATAGTGTCGAAGATTGACACTAAAATAAGACAAACATCAATAGTCATACTTATCC
196 ATCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCC
* * * * * *
3019001 CCATTCTTTTCAAGATTAGGCACCAAAAACATAGTTTTCTGATACGGATATATGATATTGACGCT
261 CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCT
* *
3019066 TTGG-TTCTGCAAGAAAAGCTTTCTTCCCCCTAAGTTTTGAAAAGCCTAAGTTCGTGCCTCAAAT
326 TTGGTTTC-GCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
3019130 GAGACAAACATGGATTCTACTAATTATCTTTATTCATTTTGGGATTAAGCACTGTAAACATATTC
390 GAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATT-AGCACTGTAAACACATTC
3019195 CCCTCATTAGGATAAATGATAT
454 CCCTCATTAGGATAAATGATAT
* * * * *
3019217 TGATGATTTCCTCTAACTTGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCATAGTTCATCC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
*
3019282 CTTGAAAAAGACAAGCATTGATTCTTGTGGA-AGTCTCCAC-CTTTTACAA-ATTGGGAACCAAG
66 CTTGAAAAAGACAAGCATCGATTCTTGT-GACAGTCTCCACTCTTTT-CAAGATTGGGAACCAAG
* * *
3019344 AACACATTCCTTTCATTAGGATACATGGCATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTT
129 AACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAG-----CTTT
* * * * * * *
3019409 TCTTTCCATCATTTTTGATAGACTCAAAGATTGACACTAAAATAAGATAAGCATGAATAGTCATA
189 TCTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATA
* * * * * * *
3019474 CTTATCCGCATTCTTTTCAGGATTAGGCACCAAAAACATAGTCTTCTAATAGGGATATACGATAT
254 CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
3019539 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AATGTTTTGAAAAGTCTAAGTTCGTGC
319 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAA-GTTTTGAAAAGTCTAAGTTCGTGC
** * * *
3019603 CTCAAATGAGACAAACATTTATTCTACTAATGATCTTTATTCATTTTGGGATTAAGCACTGTAAA
383 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATT-AGCACTGTAAA
3019668 CACATTCCCCTCATTAGGATAAATGATAT
447 CACATTCCCCTCATTAGGATAAATGATAT
* * * * * * *
3019697 TAATGATTTTCTCAAACTTAGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCACAGTTCATCC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * **
3019762 CTTGAAAAAGACAAGCATTGATTTTTGTGGTAGTCTCCAC-CTTTTTCAAGATTGGGAACCAAGA
66 CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTC-TTTTCAAGATTGGGAACCAAGA
*
3019826 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTCTT
130 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGC---T-T-TT
* * * * * *
3019891 CTTTCCATCATTTTCGATAGACTCAAAGATTGACACTAAAATAAGACAAACATGAATAGTCATAC
190 CTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATAC
* * * * *
3019956 TTATCCCCATTCTTTTC-AGAATTAGGCACCAAAAACATAGTCTTCTAATACGGATATACGATAT
255 TAATCCCCATTCTTTTCAAG-ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATAT
* *
3020020 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCGCCCTATGTTTTGAAAAGTCTAAGTTCGTGCC
319 TGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCC
* * * *
3020085 TCAAAGGAGACAAACATGGATTCTACTAATGATCTTTATTCATTTTGGGATTAAGCACTGTAAAC
384 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATT-AGCACTGTAAAC
3020150 ACATTCCCCTCATTAGGATAAATGATAT
448 ACATTCCCCTCATTAGGATAAATGATAT
* * * * * * *
3020178 TAATGATTTTCTCAAACTTAGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCACAGTTCATCC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
*
3020243 CTTGAAAAAGGCAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
66 CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
* * * *
3020308 CACATT-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAATAAAGGCCTTTCTTTCG
131 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCC
* * *
3020372 TTCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAACAATCATACTAATCC
196 ATCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCC
* **
3020437 CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTACTCATAAGGATACACGATATTGTTGCT
261 CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCT
* * * *
3020502 TTGGTTTCGCAAGAAAGGCTTTCTT-CCCTTCAATTTTTGAAAAGTCTAAGTTCATGCCTCATAT
326 TTGGTTTCGCAAGAAAGGCTTTCTTCCCCCT-AAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAAT
* * * * * * * *
3020566 GAGATAGACATGGATTCTAGTATTGATCTTCATTCAATTCATGATTAAGCACAGTAAACGCATTC
390 GAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATT-AGCACTGTAAACACATTC
* * * * * *
3020631 CCATTACTACGG-TAAAAGGTGT
454 CCCTCATTA-GGATAAATGATAT
* * * *
3020653 TGATGATTTTCTCTAGAATGGAAATCTTTTTTTTCCCCTATTTTGCTTAAAATCAAAGTTCATCC
1 TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
* * * * **
3020718 CTTGAAAAAGACAAGCATCGATTCTTGTGATAGTCTCCACTCTTTTTAAGATTAGGAATCTTGAA
66 CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
* * * * * *
3020783 CACATTCTCTTCACTAGCATACATGACATTAACGTTTTGGTGTCGCAATAAAAGCTTTTCTTTCC
131 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCC
* * *** * * *
3020848 AACGTTTAAAAGAGACTCAAAGTTTGTCACTCAAATAAGACAAACATGAATAGTCATACTAAT-C
196 ATCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCC
* * * *
3020912 CCATTCTTTTCAGGATTAGGCAACATAAACAAAAT-TTCTCATAAGGA
261 CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
3020959 ATAAGCACTA
Statistics
Matches: 6407, Mismatches: 895, Indels: 313
0.84 0.12 0.04
Matches are distributed among these distances:
458 6 0.00
459 345 0.05
460 5 0.00
461 6 0.00
462 9 0.00
463 3 0.00
464 3 0.00
466 1 0.00
467 1 0.00
468 1 0.00
469 1 0.00
471 81 0.01
472 393 0.06
473 25 0.00
474 824 0.13
475 1688 0.26
476 1679 0.26
477 28 0.00
478 2 0.00
479 5 0.00
480 413 0.06
481 477 0.07
482 2 0.00
483 1 0.00
489 1 0.00
490 1 0.00
495 1 0.00
496 1 0.00
497 1 0.00
502 1 0.00
506 1 0.00
507 2 0.00
508 5 0.00
509 112 0.02
510 282 0.04
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (475 bp):
TGATGATTTTCTCTAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCC
CTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCC
ATCATTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCC
CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCT
TTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAATG
AGACAAACATGGATTCTAGTAATGATCTTTATTCATTTCGTGATTAGCACTGTAAACACATTCCC
CTCATTAGGATAAATGATAT
Found at i:3017643 original size:34 final size:34
Alignment explanation
Indices: 3017580--3017646 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
3017570 CATTGTCCTT
**
3017580 TCATAAGGATATACGATATTGATGCGTTGGTTTC
1 TCATAAGGATATACGATATTGACACGTTGGTTTC
*
3017614 TCATAAGGATATACGATATTGACATGTTGGTTT
1 TCATAAGGATATACGATATTGACACGTTGGTTT
3017647 TGCAAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.28, C:0.10, G:0.22, T:0.39
Consensus pattern (34 bp):
TCATAAGGATATACGATATTGACACGTTGGTTTC
Found at i:3018219 original size:158 final size:158
Alignment explanation
Indices: 3018050--3020600 Score: 403
Period size: 158 Copynumber: 16.0 Consensus size: 158
3018040 ATACAAATCC
**
3018050 CCATTCTTTTCAAGATTAGGCACCATAAACGTAGTCTCCTCATAAGGATACAGGATATTGATGCT
1 CCATTCTTTTCAAGATTAGGCACCATAAACACAGTCTCCTCATAAGGATACAGGATATTGATGCT
* *
3018115 TTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTTAGTTTTGAAAAGTCTAAA-TTCGTGCCTTAAAT
66 TTGGTTTCACAAGAAAGGCTTTCTTCCCCCTTAGTTTTGAAAAGTCTAAAGTTCGT-CCTCAAAT
*
3018179 GAGACAAACATTGATTCTAGTAATGATCT
130 AAGACAAACATTGATTCTAGTAATGATCT
* * * ** * * * * * *
3018208 TCATTCATTTCATGATTAGGCACTGTAAACACATTCCCCTCAT-TGAGATAAATGATATTGATGA
1 CCATTCTTTTCAAGATTAGGCACCATAAACACAGTCTCCTCATAAG-GATACAGGATATTGATGC
** * * * *** * * * * *
3018272 TTTTCTCTAATAAGGAAATATTTTCTAT--ACCTTATTTTCCTTAAAA-TC-AAAGATCATCCAT
65 TTTGGTTTCACAA-GAAAGGCTTTCT-TCCCCCTTAGTTT--TGAAAAGTCTAAAGTTCGTCC-T
* * * * * * *
3018333 TAAAAAAGACAAGCATCGATTCTTGCAA-CAGTCT
125 CAAATAAGACAAACATTGATTCTAGTAATGA-TCT
* * * * * * *
3018367 CCATTGTTTTCAAGATTTGGAACCAAAAACCCATTC-CCTTCATTAA-GATACATGG-CATTGAT
1 CCATTCTTTTCAAGATTAGGCACCATAAACACAGTCTCC-TCA-TAAGGATACA-GGATATTGAT
* * ** * * ** *
3018429 GCTTTGGTGTCACAATAAAGGCTTTTCTTTCATCC--ATTTTTG-ATAGAATAAAGTTTGTCTCT
63 GCTTTGGTTTCACAAGAAAGGC-TTTC-TTCCCCCTTAGTTTTGAAAAGTCTAAAGTTCGTC-CT
* * * *
3018491 CAAATAAGGCAAATA-TGAATAGTC-A-TACTAATC-
125 CAAATAAGACAAACATTG-AT--TCTAGTAATGATCT
* * * * * *
3018524 CCTAATCTTTTTAAGATTAGGCACCATAAACATAGTCTCCTCATAAGGGTATAGGATATTGACGC
1 CC-ATTCTTTTCAAGATTAGGCACCATAAACACAGTCTCCTCATAAGGATACAGGATATTGATGC
**
3018589 TTTGGTTTTGCAAGAAAGGCTTTCTTCCCCCTTAGTTTTGAAAAGTCTAAA-TTCGTACCTCAAA
65 TTTGGTTTCACAAGAAAGGCTTTCTTCCCCCTTAGTTTTGAAAAGTCTAAAGTTCGT-CCTCAAA
* * *
3018653 TGAGACACACATTGATTCTAGTAAGGATCT
129 TAAGACAAACATTGATTCTAGTAATGATCT
* * ** * * * * * * * *
3018683 TCATTCATTTCGTGATTAGGAACCGTAAACACATTC-CCTTCATTAGGATAAATGATATTAATGA
1 CCATTCTTTTCAAGATTAGGCACCATAAACACAGTCTCC-TCATAAGGATACAGGATATTGATGC
* * * * *** ** * * *
3018747 TTTGCTCTCGCATGGAAATTTTTTCTTTGCCC-TATTTTCCTTAAAA-TC-AAAGTTCATCCCTT
65 TTTGGTTTCACA-AGAAAGGCTTTCTTCCCCCTTAGTTT--TGAAAAGTCTAAAGTTCGT-CC-T
* * * * *
3018809 GAAA-AAGATAAGCATTGATTCTCGTGAT-AGTCT
125 CAAATAAGACAAACATTGATTCTAGTAATGA-TCT
* * * * * ** *
3018842 CCACTCTTTTCAAGATTAGGAACCA-AGAACCCATTC-CCTTCATTAGGATACCTGACATTGATG
1 CCATTCTTTTCAAGATTAGGCACCATA-AACACAGTCTCC-TCATAAGGATACAGGATATTGATG
* * * * * * * * * *
3018905 CTTTGGTGTT-GCAATAAAAGCTTTTCTAT--CCATCATTTTTG-ATAGTGTCGAAGATT-GACA
64 CTTTGGT-TTCACAAGAAAGGC-TTTCT-TCCCCCTTAGTTTTGAAAAGTCT-AAAG-TTCGTC-
* ** * * *
3018965 CTAAAATAAGACAAACATCAATAGTC-A-TACTTATCC
123 CTCAAATAAGACAAACATTGAT--TCTAGTAATGATCT
* * * * * * * * *
3019001 CCATTCTTTTCAAGATTAGGCACCAAAAACATAGTTTTCTGATACGGATATATGATATTGACGCT
1 CCATTCTTTTCAAGATTAGGCACCATAAACACAGTCTCCTCATAAGGATACAGGATATTGATGCT
* * * *
3019066 TTGG-TTCTGCAAGAAAAGCTTTCTTCCCCCTAAGTTTTGAAAAGCCT-AAGTTCGTGCCTCAAA
66 TTGGTTTC-ACAAGAAAGGCTTTCTTCCCCCTTAGTTTTGAAAAGTCTAAAGTTCGT-CCTCAAA
* * * *
3019129 TGAGACAAACATGGATTCTACTAATTATCT
129 TAAGACAAACATTGATTCTAGTAATGATCT
** ** * ** * * * * * * *
3019159 TTATTCATTTT-GGGATTAAGCACTGTAAACATATTCCCCTCATTAGGATAAATGATATTGATGA
1 CCATTC-TTTTCAAGATTAGGCACCATAAACACAGTCTCCTCATAAGGATACAGGATATTGATGC
** * * ** * ** * * * *
3019223 TTTCCTCTAACTTGGAAA-TCTTTTCTT-TGCCTTATTTTCCTTAAAA-TC-ATAGTTCATCCCT
65 TTTGGTTTCAC-AAGAAAGGC-TTTCTTCCCCCTTAGTTT--TGAAAAGTCTAAAGTTCGT-CC-
* * *
3019284 TGAAA-AAGACAAGCATTGATTCTTGTGGAA-G-TCT
124 TCAAATAAGACAAACATTGATTCTAGT--AATGATCT
* * * * *
3019318 CCA-CCTTTTACAA-ATTGGGAACCA-AGAACACA-T-TCCTTTCATTAGGATACATGG-CATTG
1 CCATTCTTTT-CAAGATTAGGCACCATA-AACACAGTCTCC--TCATAAGGATACA-GGATATTG
* * * * * * * * *
3019377 ATGCTTTGGTGTT-GCAATAAAAGCTTTTCTTTTCTTTCCATCATTTTTG-ATAGACTCAAAGAT
61 ATGCTTTGGT-TTCACAAGAAAGGC-TTTC--TTC--CCCCTTAGTTTTGAAAAGTCT-AAAG-T
* * * * * *
3019440 T-GACACTAAAATAAGATAAGCA-TGAATAGTC-A-TACTTATC-
118 TCGTC-CTCAAATAAGACAAACATTG-AT--TCTAGTAATGATCT
* * * * * * * * *
3019480 CGCATTCTTTTCAGGATTAGGCACCAAAAACATAGTCTTCTAATAGGGATATACGATATTGACGC
1 C-CATTCTTTTCAAGATTAGGCACCATAAACACAGTCTCCTCATAAGGATACAGGATATTGATGC
* *
3019545 TTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC-AATGTTTTGAAAAGTCT-AAGTTCGTGCCTCAA
65 TTTGGTTTCACAAGAAAGGCTTTCTTCCCCCTTA-GTTTTGAAAAGTCTAAAGTTCGT-CCTCAA
* * *
3019608 ATGAGACAAACATTTATTCTACTAATGATCT
128 ATAAGACAAACATTGATTCTAGTAATGATCT
** ** * ** * * * * * * *
3019639 TTATTCATTTT-GGGATTAAGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTAATGA
1 CCATTC-TTTTCAAGATTAGGCACCATAAACACAGTCTCCTCATAAGGATACAGGATATTGATGC
* * * ** * * * *
3019703 TTT--TCTCAAACTTAGAAA-TCTTTTCTT-TGCCTTATTTTCCTTAAAA-TC-ACAGTTCATCC
65 TTTGGTTTC--AC-AAGAAAGGC-TTTCTTCCCCCTTAGTTT--TGAAAAGTCTAAAGTTCGT-C
* * * * **
3019762 CTTGAAA-AAGACAAGCATTGATTTTTGTGGT-AGTCT
123 C-TCAAATAAGACAAACATTGATTCTAGTAATGA-TCT
* * * * * * *
3019798 CCA-CCTTTTTCAAGATTGGGAACCA-AGAACACATTC-CCTTCATTAGGATACATGACATTGAT
1 CCATTC-TTTTCAAGATTAGGCACCATA-AACACAGTCTCC-TCATAAGGATACAGGATATTGAT
* * * * * * * *
3019860 GCTTTGGTGTT-GCAATAAAAGCTTTTCTCTTCTTTCCATCA-TTTTCG-ATAGACTCAAAGATT
63 GCTTTGGT-TTCACAAGAAAGGC--TT-TCTTC--CCCCTTAGTTTT-GAAAAGTCT-AAAG-TT
* * * * *
3019922 -GACACTAAAATAAGACAAACA-TGAATAGTC-A-TACTTATCC
119 CGTC-CTCAAATAAGACAAACATTG-AT--TCTAGTAATGATCT
* * * * * * * *
3019962 CCATTCTTTTC-AGAATTAGGCACCAAAAACATAGTCTTCTAATACGGATATACGATATTGACGC
1 CCATTCTTTTCAAG-ATTAGGCACCATAAACACAGTCTCCTCATAAGGATACAGGATATTGATGC
* *
3020026 TTTGGTTTCGCAAGAAAGGCTTTCTTCGCCC-TATGTTTTGAAAAGTCT-AAGTTCGTGCCTCAA
65 TTTGGTTTCACAAGAAAGGCTTTCTTCCCCCTTA-GTTTTGAAAAGTCTAAAGTTCGT-CCTCAA
** * *
3020089 AGGAGACAAACATGGATTCTACTAATGATCT
128 ATAAGACAAACATTGATTCTAGTAATGATCT
** ** * ** * * * * * * *
3020120 TTATTCATTTT-GGGATTAAGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTAATGA
1 CCATTC-TTTTCAAGATTAGGCACCATAAACACAGTCTCCTCATAAGGATACAGGATATTGATGC
* * * ** * * * *
3020184 TTT--TCTCAAACTTAGAAA-TCTTTTCTT-TGCCTTATTTTCCTTAAAA-TC-ACAGTTCATCC
65 TTTGGTTTC--AC-AAGAAAGGC-TTTCTTCCCCCTTAGTTT--TGAAAAGTCTAAAGTTCGT-C
* * * * *
3020243 CTTGAAA-AAGGCAAGCATCGATTCTTGTGACA-G-TCT
123 C-TCAAATAAGACAAACATTGATTCTAGT-A-ATGATCT
* * * * * *
3020279 CCACTCTTTTCAAGATTGGGAACCA-AGAACACA-T-TCCTTCATTAGGATACATGACATTGATG
1 CCATTCTTTTCAAGATTAGGCACCATA-AACACAGTCTCC-TCATAAGGATACAGGATATTGATG
* * * * * *
3020341 CTTTGGTGTCACAATAAAGGCCTTTCTT--TCGTTCATTTTTGATAGAA-TC-AAAGTTTGTCTC
64 CTTTGGTTTCACAAGAAAGG-CTTTCTTCCCCCTT-AGTTTTGA-A-AAGTCTAAAGTTCGTC-C
* * * *
3020402 TCAAATAAGACAAACA-TGA-ACAATCA-TACTAATCC
124 TCAAATAAGACAAACATTGATTC--T-AGTAATGATCT
* * * *
3020437 CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTACTCATAAGGATACACGATATTGTTGCT
1 CCATTCTTTTCAAGATTAGGCACCATAAACACAGTCTCCTCATAAGGATACAGGATATTGATGCT
* * * *
3020502 TTGGTTTCGCAAGAAAGGCTTTCTT--CCCTTCAATTTTTGAAAAGTCT-AAGTTCATGCCTCAT
66 TTGGTTTCACAAGAAAGGCTTTCTTCCCCCTT--AGTTTTGAAAAGTCTAAAGTTCGT-CCTCAA
* * * * *
3020564 ATGAGATAGACATGGATTCTAGTATTGATCT
128 ATAAGACAAACATTGATTCTAGTAATGATCT
*
3020595 TCATTC
1 CCATTC
3020601 AATTCATGAT
Statistics
Matches: 1669, Mismatches: 520, Indels: 408
0.64 0.20 0.16
Matches are distributed among these distances:
156 28 0.02
157 61 0.04
158 685 0.41
159 574 0.34
160 87 0.05
161 26 0.02
162 12 0.01
163 51 0.03
164 132 0.08
165 10 0.01
166 3 0.00
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.35
Consensus pattern (158 bp):
CCATTCTTTTCAAGATTAGGCACCATAAACACAGTCTCCTCATAAGGATACAGGATATTGATGCT
TTGGTTTCACAAGAAAGGCTTTCTTCCCCCTTAGTTTTGAAAAGTCTAAAGTTCGTCCTCAAATA
AGACAAACATTGATTCTAGTAATGATCT
Found at i:3021266 original size:349 final size:349
Alignment explanation
Indices: 3020652--3021291 Score: 896
Period size: 349 Copynumber: 1.8 Consensus size: 349
3020642 GTAAAAGGTG
* * *
3020652 TTGATGATTTTCTCTAGAATGGAAATCTTTTTTTTCCCCTATTTTGCTTAAAATCAAAGTTCATC
1 TTGATGATTTTCTCTAGAATAGAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATC
* * * * **
3020717 CCTTGAAAAAGACAAGCATCGATTCTTGTGATAGTCTCCACTCTTTTTAAGATTAGGAATCTTGA
66 CCTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTATTTTCAAGATTAGGAACCAAGA
* *
3020782 ACACATTCTCTTCACTAGCATACATGACATTAACGTTTTGGTGTCGCAATAAAAGCTTTTCTTTC
131 ACACATTCCCTTCACTAGCATACATGACATTAACGTTTTGGTGTCACAATAAAAGCTTTTCTTTC
*
3020847 CAACGTTTAAAAGAGACTCAAAGTTTGTCACTCAAATAAGACAAACATGAATAGTCATACTAATC
196 CAACGTTTAAAAGAGACTCAAAGTTTGCCACTCAAATAAGACAAACATGAATAGTCATACTAATC
*
3020912 CCATTCTTTTCAGGATTAGGCAACATAAACAAAATTTCTCATAAGGAATAAGCACTATAAACACA
261 CCATTCTTTTCAAGATTAGGCAACATAAACAAAATTTCTCATAAGGAATAAGCACTATAAACACA
3020977 TTCCCCTCATTAGGACAAATGATA
326 TTCCCCTCATTAGGACAAATGATA
* * * * *
3021001 TTGATGATTTTCTCTA-ACCTAGAATTCTTTTCTTTGCCTTATTTTCCTTAAAATCTAAGTTCAT
1 TTGATGATTTTCTCTAGA-ATAGAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCAT
** *
3021065 CCCTTGAAAAAGATTAGCATCGATTCTTGTGACAGTCTCCACTATTTTCAAGATTGGGAACCAAG
65 CCCTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTATTTTCAAGATTAGGAACCAAG
** * * *
3021130 AACACATTCCCTTCGTTAAG-ATACATGACATTTATGCTTTT-GTGTCACAATAAAGGCTTTTCT
130 AACACATTCCCTTCACT-AGCATACATGACATTAACG-TTTTGGTGTCACAATAAAAGCTTTTCT
* * * **
3021193 TT-CATCGGTTTTGATAGA-A-TCAAAGTTTGCCTTTCAAATAAGACAAACATGAATAGTCATAC
193 TTCCAAC-G-TTTAAAAGAGACTCAAAGTTTGCCACTCAAATAAGACAAACATGAATAGTCATAC
*
3021255 TAATCCCCATTCTTTTCAAGATTAGGCACCATAAACA
256 TAAT-CCCATTCTTTTCAAGATTAGGCAACATAAACA
3021292 TAGTCTCCTC
Statistics
Matches: 253, Mismatches: 32, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
348 48 0.19
349 192 0.76
350 13 0.05
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.35
Consensus pattern (349 bp):
TTGATGATTTTCTCTAGAATAGAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATC
CCTTGAAAAAGACAAGCATCGATTCTTGTGACAGTCTCCACTATTTTCAAGATTAGGAACCAAGA
ACACATTCCCTTCACTAGCATACATGACATTAACGTTTTGGTGTCACAATAAAAGCTTTTCTTTC
CAACGTTTAAAAGAGACTCAAAGTTTGCCACTCAAATAAGACAAACATGAATAGTCATACTAATC
CCATTCTTTTCAAGATTAGGCAACATAAACAAAATTTCTCATAAGGAATAAGCACTATAAACACA
TTCCCCTCATTAGGACAAATGATA
Found at i:3021723 original size:824 final size:824
Alignment explanation
Indices: 3020136--3021767 Score: 2294
Period size: 824 Copynumber: 2.0 Consensus size: 824
3020126 ATTTTGGGAT
* * *
3020136 TAAGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTAATGATTTTCTCAAACTTAGAA
1 TAAGCACTATAAACACATTCCCCTCATTAGGACAAATGATATTAATGATTTTCTCAAACCTAGAA
*
3020201 ATCTTTTCTTTGCCTTATTTTCCTTAAAATCACAGTTCATCCCTTGAAAAAGGCAAGCATCGATT
66 ATCTTTTCTTTGCCTTATTTTCCTTAAAATCACAGTTCATCCCTTGAAAAAGACAAGCATCGATT
* *
3020266 CTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTCATTAGGATACAT
131 CTTGTGACAGTCTCCACTATTTTCAAGATTGGGAACCAAGAACACATTCCTTCATTAAGATACAT
* *
3020331 GACATTGATGCTTTGGTGTCACAATAAAGGCCTTTCTTTCGTTCATTTTTGATAGAATCAAAGTT
196 GACATTGATGCTTTGGTGTCACAATAAAGGCCTTTCTTTCGATCAGTTTTGATAGAATCAAAGTT
*
3020396 TGTCTCTCAAATAAGACAAACATGAACAATCATACTAATCCCCATTCTTTTCAAGATTAGGCACC
261 TGCCTCTCAAATAAGACAAACATGAACAATCATACTAATCCCCATTCTTTTCAAGATTAGGCACC
* **
3020461 ATAAACATAGTCTACTCATAAGGATACACGATATTGTTGCTTTGGTTTCGCAAGAAAGGCTTTCT
326 ATAAACATAGTCTACTCATAAGGATACAAGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCT
* * * * *
3020526 TCCCTTCAATTTTTGAAAAGTCTAAGTTCATGCCTCATATGAGATAGACATGGATTCTAGTATTG
391 TCCCTTCAATTTTTGAAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* * * *
3020591 ATCTTCATTCAATTCATGATTAAGCACAGTAAACGCATTCCCATTACTACGGTAAAAGGTGTTGA
456 ATCTTCATTCAATTCATGATTAAGCACAGTAAACACATTCCCATCACTACGGTAAAAGATATTGA
* * * * * *
3020656 TGATTTTCTCTAGAATGGAAATCTTTTTTTTCCCCTATTTTGCTTAAAATCAAAGTTCATCCCTT
521 TGATTTTCTCTAGAAAGGAAATATTTTCTTTCCCCTATTTTGCTTAAAATCAAAGATCATCCATC
* ** * * * * **
3020721 GAAAAAGACAAGCATCGATTCTTGTGATAGTCTCCACTCTTTTTAAGATTAGGAATCTTGAACAC
586 AAAAAAGACAAGCATCGATTCTTGCAACAATCTCCACTCTTTTCAAGATTAGGAACCAAGAACAC
* * * *
3020786 ATTCTCTTCACTAGCATACATGACATTAACGTTTTGGTGTCGCAATAAAAGCTTTTCTTTCCAAC
651 ATTCCCTTCACTAGCATACATGACATCAACGCTTTGGTGTCACAATAAAAGCTTTTCTTTCCAAC
*
3020851 GTTTAAAAGAGACTCAAAGTTTGTCACTCAAATAAGACAAACATGAATAGTCATACTAATCCC-A
716 GTTTAAAAGAGAATCAAAGTTTGTCACTCAAATAAGACAAACATGAATAGTCATACTAATCCCAA
*
3020915 TTCTTTTCAGGATTAGGCAACATAAACAAAATTTCTCATAAGGAA
781 TT-TTTTCAAGATTAGGCAACATAAACAAAATTTCTCATAAGGAA
* *
3020960 TAAGCACTATAAACACATTCCCCTCATTAGGACAAATGATATTGATGATTTTCTCTAACCTAGAA
1 TAAGCACTATAAACACATTCCCCTCATTAGGACAAATGATATTAATGATTTTCTCAAACCTAGAA
* **
3021025 TTCTTTTCTTTGCCTTATTTTCCTTAAAATCTA-AGTTCATCCCTTGAAAAAGATTAGCATCGAT
66 ATCTTTTCTTTGCCTTATTTTCCTTAAAATC-ACAGTTCATCCCTTGAAAAAGACAAGCATCGAT
*
3021089 TCTTGTGACAGTCTCCACTATTTTCAAGATTGGGAACCAAGAACACATTCCCTTCGTTAAGATAC
130 TCTTGTGACAGTCTCCACTATTTTCAAGATTGGGAACCAAGAACACATT-CCTTCATTAAGATAC
* * * *
3021154 ATGACATTTATGCTTTTGTGTCACAATAAAGGCTTTTCTTTC-ATCGGTTTTGATAGAATCAAAG
194 ATGACATTGATGCTTTGGTGTCACAATAAAGGCCTTTCTTTCGATCAGTTTTGATAGAATCAAAG
* * *
3021218 TTTGCCTTTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCA
259 TTTGCCTCTCAAATAAGACAAACATGAACAATCATACTAATCCCCATTCTTTTCAAGATTAGGCA
*
3021283 CCATAAACATAGTCTCCTCATAAGGATACAAGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTT
324 CCATAAACATAGTCTACTCATAAGGATACAAGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTT
* * * *
3021348 CTTCCCCCTT-AA-TTTTGAAAAGTCTAAATTCGTGCCTTAAATGAGACAAACGTTGATTCTAGT
389 CTT--CCCTTCAATTTTTGAAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCTAGT
* * * * * ** *
3021411 AATGATCTTCATTCATTTCATGATTAGGCACTGTAAACACGTTCCCCTCA-TTGGGATAAATGAT
452 AATGATCTTCATTCAATTCATGATTAAGCACAGTAAACACATTCCCATCACTACGG-TAAAAGAT
*
3021475 ATTGATGATTTTCTCTA-ACAAGGAAATATTTTCTTTGCCCTATTTT-CTTTAAAATCAAAGATC
516 ATTGATGATTTTCTCTAGA-AAGGAAATATTTTCTTTCCCCTATTTTGC-TTAAAATCAAAGATC
* * *
3021538 ATCCATCAAAAAAGACCAGCATCGATTCTTGCAACAATCTCCACTGTTTTCAAGATTTGGAACCA
579 ATCCATCAAAAAAGACAAGCATCGATTCTTGCAACAATCTCCACTCTTTTCAAGATTAGGAACCA
* * ** * * *
3021603 AGAACCCATTCCCTTCATTAAG-ATACATGGTATCGATGCTTTGGTGTCACAATAAAGGCTTTTC
644 AGAACACATTCCCTTCACT-AGCATACATGACATCAACGCTTTGGTGTCACAATAAAAGCTTTTC
* *** * * * *
3021667 TTT-CATCCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATAAGGCAAATATGAATAGTCATAC
708 TTTCCA-ACGTTTAAAAGAGAATCAAAGTTTGTCACTCAAATAAGACAAACATGAATAGTCATAC
* *
3021731 TAATCCCTAATTTTTTTAAGATTAGGCACCATAAACA
772 TAATCCC-AATTTTTTCAAGATTAGGCAACATAAACA
3021768 TAGTCTCCTT
Statistics
Matches: 708, Mismatches: 89, Indels: 21
0.87 0.11 0.03
Matches are distributed among these distances:
823 7 0.01
824 614 0.87
825 79 0.11
826 8 0.01
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (824 bp):
TAAGCACTATAAACACATTCCCCTCATTAGGACAAATGATATTAATGATTTTCTCAAACCTAGAA
ATCTTTTCTTTGCCTTATTTTCCTTAAAATCACAGTTCATCCCTTGAAAAAGACAAGCATCGATT
CTTGTGACAGTCTCCACTATTTTCAAGATTGGGAACCAAGAACACATTCCTTCATTAAGATACAT
GACATTGATGCTTTGGTGTCACAATAAAGGCCTTTCTTTCGATCAGTTTTGATAGAATCAAAGTT
TGCCTCTCAAATAAGACAAACATGAACAATCATACTAATCCCCATTCTTTTCAAGATTAGGCACC
ATAAACATAGTCTACTCATAAGGATACAAGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCT
TCCCTTCAATTTTTGAAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATG
ATCTTCATTCAATTCATGATTAAGCACAGTAAACACATTCCCATCACTACGGTAAAAGATATTGA
TGATTTTCTCTAGAAAGGAAATATTTTCTTTCCCCTATTTTGCTTAAAATCAAAGATCATCCATC
AAAAAAGACAAGCATCGATTCTTGCAACAATCTCCACTCTTTTCAAGATTAGGAACCAAGAACAC
ATTCCCTTCACTAGCATACATGACATCAACGCTTTGGTGTCACAATAAAAGCTTTTCTTTCCAAC
GTTTAAAAGAGAATCAAAGTTTGTCACTCAAATAAGACAAACATGAATAGTCATACTAATCCCAA
TTTTTTCAAGATTAGGCAACATAAACAAAATTTCTCATAAGGAA
Found at i:3024158 original size:476 final size:474
Alignment explanation
Indices: 3020960--3024160 Score: 3895
Period size: 476 Copynumber: 6.7 Consensus size: 474
3020950 TCATAAGGAA
* * * *
3020960 TAAGCACTATAAACACATTCCCCTCATTAGGACAAATGATATTGATGATTTTCTCTAACCTAGAA
1 TAAGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAACATGGAA
* * * **
3021025 TTCTTTTCTTTGCCTTATTTTCCTTAAAATCTAAGTTCATCCCTTGAAAAAGATTAGCATCGATT
66 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATT
* *
3021090 CTTGTGACAGTCTCCACTATTTTCAAGATTGGGAACCAAGAACACATTCCCTTCGTTAAGATACA
131 CTTGTGACAGTCTCCACT-TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACA
* * * * * *
3021155 TGACATTTATGCTTTTGTGTCACAATAAAGGCTTTTCTTT-CATCGGTTTTGATAGAATCAAAGT
195 TGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATAGACTCAAAGT
* ** *
3021219 TTGCCTTTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCAC
260 TTGACACTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* * *
3021284 CATAAACATAGTCTCCTCATAAGGATACAAGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC
325 CATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC
* * * * *
3021349 TTCCCCCTTAA-TTTTGAAAAGTCTAAATTCGTGCCTTAAATGAGACAAACGTTGATTCTAGTAA
390 TTCCCCC--AATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAA
**
3021413 TGATCTTCATTCATTTCATGAT
453 TGATCTTCATTCATTTCGGGAT
* * * *
3021435 TAGGCACTGTAAACACGTTCCCCTCATTGGGATAAATGATATTGATGATTTTCTCTAACAAGGAA
1 TAAGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAACATGGAA
* * * * ** *
3021500 ATATTTTCTTTGCCCTATTTTCTTTAAAATCAAAGATCATCCATCAAAAAAGACCAGCATCGATT
66 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATT
** * * * *
3021565 CTTGCAACAATCTCCACTGTTTTCAAGATTTGGAACCAAGAACCCATTCCCTTCATTAAGATACA
131 CTTGTGACAGTCTCCACT-TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACA
** * * * *
3021630 TGGTATCGATGCTTTGGTGTCACAATAAAGGCTTTTCTTT-CATCCGTTTTTGATAGAATCAAAG
195 TGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCAT-CGTTTTTGATAGACTCAAAG
* * * * * * *
3021694 TTTGTCTCTCAAATAAGGCAAATATGAATAGTCATACTAATCCCTAATT-TTTTTAAGATTAGGC
259 TTTGACACTCAAATAAGACAAACATGAATAGTCATACTAATCCC-CATTCTTTTCAGGATTAGGC
* * * * *
3021758 ACCATAAACATAGTCTCCTTATTAA-GATATAGGATATTGATGCTTTGATTTCGCAAGAAAGGCT
323 ACCATAAACATAGTCTTCTCA-TAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCT
* * * * * *
3021822 CTCTTCCCCCCTAGTTTTGAAAAGGT-TAATTTCGTGCCTCAAATGAGACACACATGGATTCTAG
387 TTCTT-CCCCCAATTTTTGAAAA-GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAC
* *
3021886 TAAGGATCTTCATTCATTTCGTGAT
450 TAATGATCTTCATTCATTTCGGGAT
* **
3021911 TAGGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTCGCATGGAA
1 TAAGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAACATGGAA
* *
3021976 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGATAAGCATTGATT
66 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATT
* ** ** *
3022041 CTCGTGATTGTCTCCACTGTTTTCAAGATTCAGAACCAAGAACCCATTCCCTTCATTAGGATACA
131 CTTGTGACAGTCTCCACT-TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACA
* ** * *
3022106 TGACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCACTTTTGATAGACTCGAAGA
195 TGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATAGACTCAAAGT
* * * *
3022171 TTGACACTAAAACAAGACAAACATGAATAGTCATACTTATCCCCATTCTTTTTAGGATTAGGCAC
260 TTGACACTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
* * * *
3022236 CAAAAACATAGT-TT-TC-T-A--ATA-A-GATATTGACGCTTCGGTTTTGCAAGAAAGGCCTTC
325 CATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTC
*
3022293 TTCCCCCTAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAAT
390 TTCCCCC-AATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAAT
*
3022358 GATCTT-ATTCATTTTGGGAT
454 GATCTTCATTCATTTCGGGAT
* * **
3022378 TAAGCACTGTAAACACATTCCCTTCATTAGGATAAATGATATTGATGATTTTCTCTAACCTAAAA
1 TAAGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAACATGGAA
* * *
3022443 ATCTTTTCTTTGCCTTATTTTCCTTAAAATCACAGTTCATCCCTCGAAAAAGACAAGCATCGATT
66 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATT
* * *
3022508 CTTGTGAGAGTCGCCACCTCTTTCAAGGA-TGGGAACCAAGAACACATTCCCTTCATTAGGATAC
131 CTTGTGACAGTCTCCA-CTTTTTCAA-GATTGGGAACCAAGAACACATTCCCTTCATTAGGATAC
* *
3022572 ATGACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTTCTTTCCATCATTTTTGATAGACT
194 ATGACATTGATGCTTTGGTGTCGCAATAAAAG-----CTTTTCTTTCCATCGTTTTTGATAGACT
* * * * *
3022637 TAAAGATTGACACTAAAATAAGACAAACATGAATAGTCATACTTATCCCCTTTCTTTTCAGGATT
254 CAAAGTTTGACACTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATT
* * * * *
3022702 AGGCACCAAAAACATAGTCTTCTAATAGGGATTTACGATATTGACGCTTTGGTTTTGCAAGAAAG
319 AGGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAG
3022767 G----CTTCCCCCAATGTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
384 GCTTTCTTCCCCCAAT-TTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* * *
3022828 ACTAATGGTCTTTATTCATTTTGGGAT
448 ACTAATGATCTTCATTCATTTCGGGAT
* * *
3022855 TAAGGACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTCCTCTAACCTGGAA
1 TAAGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAACATGGAA
* * *
3022920 ATCTTTTCTTTGCCTTATTTTCTTTAAAATCACAGTTCATCCCTTGAAAAAGACAAGCATCGATT
66 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATT
* * * *
3022985 CTTGTGAGAGTCTCCACCTCTTTCAAGGTTGGGAACCAAGAACACATTCCCTTAATTAGGATACA
131 CTTGTGACAGTCTCCA-CTTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACA
* * * * * *
3023050 TGACATTGATGCTTTAGTGTTGTAATAAAAGCTTTTCTTTTCTTTCCATCATTTTTTATAGACTT
195 TGACATTGATGCTTTGGTGTCGCAATAAAAG-----CTTTTCTTTCCATCGTTTTTGATAGACTC
* * *
3023115 AAAGATTGACACTAAAATAAGACAAACATGAATAGTCATACTTATCCCCATTCTTTTCAGGATTA
255 AAAGTTTGACACTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTA
* * * * * *
3023180 AGCACCCA-AAACATAGTCTTCTAATAGGGATTTACGATATTGACGCTTTGGTTTTGTAAGAAAG
320 GGCA-CCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAG
3023244 GCTTTCTTCCCCCAATGTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
384 GCTTTCTTCCCCCAAT-TTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
* *
3023309 ACTAATGATCTTTATTCATTTTGGGAT
448 ACTAATGATCTTCATTCATTTCGGGAT
* * * *
3023336 TAAGGACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTCCTCTAACCTAGAA
1 TAAGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAACATGGAA
* * * *
3023401 ATCTTTTCTTTGTCTTATTTTCCTTAAAATCACAGTTCATCCTTTGAAAAAGACAAGCATCGATT
66 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATT
3023466 CTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATT-CCTTCATTAGGATACA
131 CTTGTGACAGTCTCCACT-TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACA
* * * * * *
3023530 TAACATTGATGCTTTGGTGTCACAATAAAGGCCTTTCTTT-CGTCCGTTTTTGATAGAATCAAAG
195 TGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCAT-CGTTTTTGATAGACTCAAAG
* * * *
3023594 TTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCTA-TCTTTTCAAGATTAGGCA
259 TTTGACACTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCA
* * * * * *
3023658 CCATAAACATTGTCTTCTCATAAGGATACACAATATTG-CAACTTTGGTTTCGCAAAAAAAGCTT
324 CCATAAACATAGTCTTCTCATAAGGATATACGATATTGAC-GCTTTGGTTTCGCAAGAAAGGCTT
* * * ** * *
3023722 TTTTCCCTCCAATTTTTGAAAAGTCTAAGTTCATGCCTCATATGAGTTAGACATGGATTCTAGTA
388 TCTTCCC-CCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTA
* *
3023787 ATGATCTTCATCCCA-TTCGTGAT
452 ATGATCTTCAT-TCATTTCGGGAT
* * * * ** *
3023810 TAAGCA-TAGTAAACACATTCCCATTACTAGGGTAAATGGCATTGATGATTTTCTCTAGCATGGA
1 TAAGCACT-GTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAACATGGA
* * * *
3023874 AATCTTCTT-TTTTCCCCAGTTTTGCTTAAAATCAAAGTTCATCCCTTGAAGAAGACAAGCATCG
65 AATCTT-TTCTTTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCG
*** * * * ** * * *
3023938 ATTCTCACGATAGTCTCCACTATTTTTAAGATTAGGAACCTTGAACACATTCTCTTCACTAGCAT
128 ATTCTTGTGACAGTCTCCACT-TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGAT
* * * * * *** * *
3024003 ACATGACATTAACGTTTTGGTGCCGCAATAAAAGCTTTTCTTTCCAACGTTTAAAAGAGACTTAA
192 ACATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATAGACTCAA
* *
3024068 AGTTTGTCACTCAAATAAGACAAACATGAATAGTCATACTAAT-CCCATTCTTTTTAGGATTAGG
257 AGTTTGACACTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGG
*
3024132 CAACATAAACATAGTCTTCTCATAAGGAT
322 CACCATAAACATAGTCTTCTCATAAGGAT
3024161 TAAGCACTAT
Statistics
Matches: 2418, Mismatches: 263, Indels: 89
0.87 0.09 0.03
Matches are distributed among these distances:
467 219 0.09
468 90 0.04
469 1 0.00
470 3 0.00
471 1 0.00
472 106 0.04
473 7 0.00
474 197 0.08
475 374 0.15
476 690 0.29
477 399 0.17
478 5 0.00
479 1 0.00
480 71 0.03
481 254 0.11
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (474 bp):
TAAGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAACATGGAA
ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATT
CTTGTGACAGTCTCCACTTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAT
GACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCGTTTTTGATAGACTCAAAGTT
TGACACTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACC
ATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCT
TCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTACTAATGA
TCTTCATTCATTTCGGGAT
Found at i:3024448 original size:349 final size:352
Alignment explanation
Indices: 3023807--3024510 Score: 857
Period size: 349 Copynumber: 2.0 Consensus size: 352
3023797 TCCCATTCGT
* ** * * *
3023807 GATTAAGCATAGTAAACACATTCCCATTACTAGGGTAAATGGCATTGATGATTTTCTCTAGCATG
1 GATTAAGCATAGTAAACACATTCCCATCACTAGGACAAATGACATTGATGATTTTCTCTAACATA
* *
3023872 GAAATCTTCTTTTTTCCCCAGTTTTGCTTAAAATCAAAGTTCATCCCTTGAAGAAGACAAGCATC
66 GAAATCTTCTTTTTTCCCCAGTTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATC
* **
3023937 GATTCTCACGATAGTCTCCACTATTTTTAAGATTAGGAACCTTGAACACATTCTCTTCACTAGCA
131 GATTCTCACGATAGTCTCCACTATTTTCAAGATTAGGAACCAAGAACACATTCTCTTCACTAGCA
* * * * * *
3024002 TACATGACATTAACGTTTTGGTGCCGCAATAAAAGCTTTTCTTTCCAACGTTTAAAAGAGACTTA
196 TACATGACATTAACGCTTTGGTGCCACAATAAAAGCCTTCCTTTCCAACGTTTAAAAGAGAATCA
* *
3024067 AAGTTTGTCACTCAAATAAGACAAACATGAATAGTCATACTAATCC-CATTCTTTTTAGGATTAG
261 AAGTTTGTCACTCAAATAAGACAAACATGAATAGCCATACTAATCCTCATTCTTTTCAGGATTAG
3024131 GCAACATAAACATAGTCTTCTCATAAG
326 GCAACATAAACATAGTCTTCTCATAAG
* * * *
3024158 GATTAAGCACTA-TAAACACATTCCCCTCATTAGGACAAATGATATTGATGATTTTCTCTAACCT
1 GATTAAGCA-TAGTAAACACATTCCCATCACTAGGACAAATGACATTGATGATTTTCTCTAACAT
** *
3024222 AGAAAT-TT-TTTCTTTGCCTTA-TTTTCCTTAAAATCAAAGTTCATCCCTT-AAAAAGATAAGC
65 AGAAATCTTCTTT-TTT-CCCCAGTTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGC
* **** * * *
3024283 ATCGGTTCTTGTTATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATT-TCCATT-AT
128 ATCGATTCTCACGATAGTCTCCACTATTTTCAAGATTAGGAACCAAGAACACATTCT-C-TTCAC
* * * * * * *** *** *
3024346 TAGGATACATGACATTGATGCTTTGGTGTCATAATAAAGGCCTTCCTTTCGTCCGTTTTTGATAG
191 TAGCATACATGACATTAACGCTTTGGTGCCACAATAAAAGCCTTCCTTTCCAACGTTTAAAAGAG
* *
3024411 AATCAAAGTTTGTCTCTCTAATAAGACAAACATGAATAGCCATACTAATCCTCATTCTTTTCAGG
256 AATCAAAGTTTGTCACTCAAATAAGACAAACATGAATAGCCATACTAATCCTCATTCTTTTCAGG
*
3024476 ATTAGGCACCATAAACATAGTCTTCTCATAAG
321 ATTAGGCAACATAAACATAGTCTTCTCATAAG
3024508 GAT
1 GAT
3024511 ACACGATATT
Statistics
Matches: 297, Mismatches: 50, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
348 1 0.00
349 154 0.52
350 80 0.27
351 60 0.20
352 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (352 bp):
GATTAAGCATAGTAAACACATTCCCATCACTAGGACAAATGACATTGATGATTTTCTCTAACATA
GAAATCTTCTTTTTTCCCCAGTTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATC
GATTCTCACGATAGTCTCCACTATTTTCAAGATTAGGAACCAAGAACACATTCTCTTCACTAGCA
TACATGACATTAACGCTTTGGTGCCACAATAAAAGCCTTCCTTTCCAACGTTTAAAAGAGAATCA
AAGTTTGTCACTCAAATAAGACAAACATGAATAGCCATACTAATCCTCATTCTTTTCAGGATTAG
GCAACATAAACATAGTCTTCTCATAAG
Found at i:3024966 original size:825 final size:825
Alignment explanation
Indices: 3023332--3024983 Score: 2568
Period size: 825 Copynumber: 2.0 Consensus size: 825
3023322 ATTCATTTTG
* * *
3023332 GGATTAAGGACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTCCTCTAACCT
1 GGATTAAGCACTATAAACACATTCCCCTCATTAGGACAAATGATATTGATGATTTCCTCTAACCT
* * *
3023397 AGAAATCTTTTCTTTGTCTTATTTTCCTTAAAATCACAGTTCATCCTTTGAAAAAGACAAGCATC
66 AGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATC
3023462 GATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTCATTAGGAT
131 GATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTCATTAGGAT
*
3023527 ACATAACATTGATGCTTTGGTGTCACAATAAAGGCCTTTCTTTCGTCCGTTTTTGATAGAATCAA
196 ACATAACATTGATGCTTTGGTGTCACAATAAAGGCCTTCCTTTCGTCCGTTTTTGATAGAATCAA
*
3023592 AGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCTATCTTTTCAAGATTAGGC
261 AGTTTGTCTCTCAAATAAGACAAACATGAATAGCCATACTAATCCCTATCTTTTCAAGATTAGGC
*
3023657 ACCATAAACATTGTCTTCTCATAAGGATACACAATATTGCAACTTTGGTTTCGCAAAAAAAGCTT
326 ACCATAAACATAGTCTTCTCATAAGGATACACAATATTGCAACTTTGGTTTCGCAAAAAAAGCTT
* * * ** *
3023722 TTTTCCCTCCAATTTTTGAAAAGTCTAAGTTCATGCCTCATATGAGTTAGACATGGATTCTAGTA
391 TCTTCCCTCCAATTTTTGAAAAGTCTAAGTTCATACCTCAAATGAGGCAAACATGGATTCTAGTA
* * * * *
3023787 ATGATCTTCATCCCATTCGTGATTAAGCATAGTAAACACATTCCCATTACTAGGGTAAATGGCAT
456 ATGATCTTCATCCAATTCATGATTAAGCACAGTAAACACATTCCCATCACTAGGATAAATGGCAT
* *
3023852 TGATGATTTTCTCTAGCATGGAAATCTTCTTTTTTCCCCAGTTTTGCTTAAAATCAAAGTTCATC
521 TGACGATTTTCTCTAGCATGGAAATCTTCTTTTTTCCCCAGTTTTGCTCAAAATCAAAGTTCATC
* *
3023917 CCTTGAAGAAGACAAGCATCGATTCTCACGATAGTCTCCACTATTTTTAAGATTAGGAACCTTGA
586 CCCTGAAGAAGACAAGCATCGATTCTCACGACAGTCTCCACTATTTTTAAGATTAGGAACCTTGA
*
3023982 ACACATTCTCTTCACTAGCATACATGACATTAACGTTTTGGTGCCGCAATAAAAGCTTTTCTTTC
651 ACACATTCTCTTCACTAGCATACATAACATTAACGTTTTGGTGCCGCAATAAAAGCTTTTCTTTC
* *
3024047 CAACGTTTAAAAGAGACTTAAAGTTTGTCACTCAAATAAGACAAACATGAATAGTCATACTAATC
716 CAACGTTTAAAAGAGACTCAAAGTTTGTCACTCAAATAAGACAAACATAAATAGTCATACTAATC
*
3024112 CCATTCTTTTTAGGATTAGGCAACATAAACATAGTCTTCTCATAA
781 CCATTCTTTTCAGGATTAGGCAACATAAACATAGTCTTCTCATAA
*
3024157 GGATTAAGCACTATAAACACATTCCCCTCATTAGGACAAATGATATTGATGATTTTCTCTAACCT
1 GGATTAAGCACTATAAACACATTCCCCTCATTAGGACAAATGATATTGATGATTTCCTCTAACCT
* *
3024222 AGAAATTTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTT-AAAAAGATAAGCATC
66 AGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATC
* * *
3024286 GGTTCTTGTTATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTTCCATT-ATTAGG
131 GATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACA-TTCC-TTCATTAGG
* *
3024350 ATACATGACATTGATGCTTTGGTGTCATAATAAAGGCCTTCCTTTCGTCCGTTTTTGATAGAATC
194 ATACATAACATTGATGCTTTGGTGTCACAATAAAGGCCTTCCTTTCGTCCGTTTTTGATAGAATC
* *
3024415 AAAGTTTGTCTCTCTAATAAGACAAACATGAATAGCCATACTAAT-CCTCATTCTTTTCAGGATT
259 AAAGTTTGTCTCTCAAATAAGACAAACATGAATAGCCATACTAATCCCT-A-TCTTTTCAAGATT
* *** * *
3024479 AGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGTTGCTTTGGTTTCGCAAGAAAG
322 AGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGCAACTTTGGTTTCGCAAAAAAA
*
3024544 GCTTTCTTCCC-CCTAATTTTTGAAAAGTTTAAGTTCATACCTCAAATGAGGCAAACATGGATTC
387 GCTTTCTTCCCTCC-AATTTTTGAAAAGTCTAAGTTCATACCTCAAATGAGGCAAACATGGATTC
* * * *
3024608 TAGTAATGATCTTCATTCAATTCATGATTAAGCACCGTAAACACATTCCCCTCGCTAGGATAAAT
451 TAGTAATGATCTTCATCCAATTCATGATTAAGCACAGTAAACACATTCCCATCACTAGGATAAAT
* *
3024673 GGTATTGGCGATTTTCTCTAGCATGGAAATC-T-TTTTTTCCCCTA-TTTTGCTCAAAATCAAAG
516 GGCATTGACGATTTTCTCTAGCATGGAAATCTTCTTTTTTCCCC-AGTTTTGCTCAAAATCAAAG
* * ** *
3024735 TTCATCCCCTGGAGAAGACAAGCATCGGTTCTCGTGACAGTCTCCACTCTTTTTAAGATTAGGAA
580 TTCATCCCCTGAAGAAGACAAGCATCGATTCTCACGACAGTCTCCACTATTTTTAAGATTAGGAA
* *
3024800 CCTTGAACACATTCTCTTC-CTTAGCATACGTAACATTGACGTTTTGGTGTCC-CAA-AAACAGC
645 CCTTGAACACATTCTCTTCAC-TAGCATACATAACATTAACGTTTTGGTG-CCGCAATAAA-AGC
* * * *
3024862 TTTTCTTTCCAATGTTTAAGATAGACTCAAAGTTTGTCACTCAAATAAGACAAATATAAATAGTC
707 TTTTCTTTCCAACGTTTAAAAGAGACTCAAAGTTTGTCACTCAAATAAGACAAACATAAATAGTC
* *
3024927 ATACTAATCCCTATTCTTTTCAGGATTAGGTAGCATAAACATAGTCTTCTCATAA
772 ATACTAATCCC-ATTCTTTTCAGGATTAGGCAACATAAACATAGTCTTCTCATAA
3024982 GG
1 GG
3024984 TTACACGAAA
Statistics
Matches: 753, Mismatches: 64, Indels: 20
0.90 0.08 0.02
Matches are distributed among these distances:
823 4 0.01
824 269 0.36
825 270 0.36
826 210 0.28
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (825 bp):
GGATTAAGCACTATAAACACATTCCCCTCATTAGGACAAATGATATTGATGATTTCCTCTAACCT
AGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATC
GATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTCATTAGGAT
ACATAACATTGATGCTTTGGTGTCACAATAAAGGCCTTCCTTTCGTCCGTTTTTGATAGAATCAA
AGTTTGTCTCTCAAATAAGACAAACATGAATAGCCATACTAATCCCTATCTTTTCAAGATTAGGC
ACCATAAACATAGTCTTCTCATAAGGATACACAATATTGCAACTTTGGTTTCGCAAAAAAAGCTT
TCTTCCCTCCAATTTTTGAAAAGTCTAAGTTCATACCTCAAATGAGGCAAACATGGATTCTAGTA
ATGATCTTCATCCAATTCATGATTAAGCACAGTAAACACATTCCCATCACTAGGATAAATGGCAT
TGACGATTTTCTCTAGCATGGAAATCTTCTTTTTTCCCCAGTTTTGCTCAAAATCAAAGTTCATC
CCCTGAAGAAGACAAGCATCGATTCTCACGACAGTCTCCACTATTTTTAAGATTAGGAACCTTGA
ACACATTCTCTTCACTAGCATACATAACATTAACGTTTTGGTGCCGCAATAAAAGCTTTTCTTTC
CAACGTTTAAAAGAGACTCAAAGTTTGTCACTCAAATAAGACAAACATAAATAGTCATACTAATC
CCATTCTTTTCAGGATTAGGCAACATAAACATAGTCTTCTCATAA
Found at i:3025076 original size:475 final size:475
Alignment explanation
Indices: 3024158--3026388 Score: 2545
Period size: 475 Copynumber: 4.7 Consensus size: 475
3024148 TTCTCATAAG
* * * * * *
3024158 GATTAAGCACTATAAACACATTCCCCTCATTAGGACAAATGATATTGATGATTTTCTCTAACCTA
1 GATTAAGCACTGTAAACACATTCCCCTCACTAGGATAAATGATATTGATGATTTTCTCTAGCATG
* * * * *
3024223 GAAATTTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCAT-CCCTTAAAAAGATAAGCATCG
66 GAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTGAAAAAGACAAGCATCG
* * * * *
3024287 GTTCTTGTTATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATT-TCCATT-ATTAGG
131 GTTCTCGTGACAGTCTCCACTCTTTTTAAGATTGGGAACCATGAACACATTCT-C-TTCATTAGG
* * * * * **** *
3024350 ATACATGACATTGATGCTTTGGTGTCATAATAAAGGCCTTCCTTTCGTCCGTTTTTGATAGAATC
194 ATACATGACATTGATGTTTTGGTGTCACAA-AAAAGCTTTTCTTTCCAATGTTTATGATAGAATC
* * * *
3024415 AAAGTTTGTCTCTCTAATAAGACAAACATGAATAGCCATACTAATCCTCATTCTTTTCAGGATTA
258 AAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTA
* * * *
3024480 GGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGTTGCTTTGGTTTCGCAAGAAAGG
323 GGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATGGGTGCTTTGCTTTCGCAAGAAAGG
* * * * * *
3024545 CTTTCTTCCCCCTAATTTTTGAAAAGTTTAAGTTCATACCTCAAATGAGGCAAACATGGATTCTA
388 CTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCACATATGAGACAAACATGGATTCTA
3024610 GTAATGATCTTCATTCAATTCAT
453 GTAATGATCTTCATTCAATTCAT
* * * **
3024633 GATTAAGCACCGTAAACACATTCCCCTCGCTAGGATAAATGGTATTGGCGATTTTCTCTAGCATG
1 GATTAAGCACTGTAAACACATTCCCCTCACTAGGATAAATGATATTGATGATTTTCTCTAGCATG
* * * *
3024698 GAAATCTTTT-TTTCCCCTATTTTGCTCAAAATCAAAGTTCATCCCCTGGAGAAGACAAGCATCG
66 GAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTGAAAAAGACAAGCATCG
* * * *
3024762 GTTCTCGTGACAGTCTCCACTCTTTTTAAGATTAGGAACCTTGAACACATTCTCTTCCTTAGCAT
131 GTTCTCGTGACAGTCTCCACTCTTTTTAAGATTGGGAACCATGAACACATTCTCTTCATTAGGAT
* * * * * *
3024827 ACGTAACATTGACGTTTTGGTGTCCCAAAAACAGCTTTTCTTTCCAATGTTTAAGATAGACTCAA
196 ACATGACATTGATGTTTTGGTGTCACAAAAA-AGCTTTTCTTTCCAATGTTTATGATAGAATCAA
* * * * *
3024892 AGTTTGTCACTCAAATAAGACAAATATAAATAGTCATACTAATCCCTATTCTTTTCAGGATTAGG
260 AGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGG
* * * * * *
3024957 TAGCATAAACATAGTCTTCTCATAAGGTTACACGAAATGGGTGCCTTGCTTTCGTAAGAATGGCT
325 CACCATAAACATAGTCTTCTCATAAGGATACACGAAATGGGTGCTTTGCTTTCGCAAGAAAGGCT
* * * * * * *
3025022 TTCTTCCCACAAATTTTTGTAAAGTCTGAGATCGTGCCACATTTGAGACAAACATGGATTCTACT
390 TTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCACATATGAGACAAACATGGATTCTAGT
* ***
3025087 AATGATCTT-ATTCATTTTGG
455 AATGATCTTCATTCAATTCAT
* * * *
3025107 GATTAAGCACTGTAAACACATTCCCCTCA-TAGGGATAAATGATTTTGATTATTTTCTCTAACCT
1 GATTAAGCACTGTAAACACATTCCCCTCACTA-GGATAAATGATATTGATGATTTTCTCTAGCAT
* * * *
3025171 GGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCATAGTTCATCCCTTGAAAAAGACAAGCATC
65 GGAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTGAAAAAGACAAGCATC
** * *
3025236 TATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAT-AACACATTC-CTTCATTAGG
130 GGTTCTCGTGACAGTCTCCACTCTTTTTAAGATTGGGAACC-ATGAACACATTCTCTTCATTAGG
* ** * ** *
3025299 ATACATGACATTGATGCTTTGGTGTCACAATAAGGGCCTTTCTTT-CGTTCGTTTTTGATAGAAT
194 ATACATGACATTGATGTTTTGGTGTCACAA-AAAAGCTTTTCTTTCCAAT-GTTTATGATAGAAT
* * * *
3025363 CAAAGTTTGTCTTTCAAATAAGACAAACATGAACAATCATACTAGTCCCCATTCTTTTCAAGATT
257 CAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATT
* * * *
3025428 AGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGCTGCTTTGGTTTCGCAAGAAAG
322 AGGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATGGGTGCTTTGCTTTCGCAAGAAAG
* * * * ** *
3025493 GCTTTTTTCCCTCCAATTTTTGAAAAGTCTAAGTTCATGCCTCATATGAGTTAGACATGGATTCT
387 GCTTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCACATATGAGACAAACATGGATTCT
3025558 AGTAATGATCTTCATTCAATTCAT
452 AGTAATGATCTTCATTCAATTCAT
* ** *
3025582 AATTAAGCA-TAGTAAACACATTCCCCTCACTAGGATAAATGGCATTGGTGATTTTCTCTAGCAT
1 GATTAAGCACT-GTAAACACATTCCCCTCACTAGGATAAATGATATTGATGATTTTCTCTAGCAT
* *
3025646 GGAAATCTTTT-TTTCCCCTATTTTGCTTAAAATCAAAGTTCATACCCTGAAAAAGACAAGCATC
65 GGAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTGAAAAAGACAAGCATC
* * * * *
3025710 GGTTCTCGTGACAGTCTCCACTCTTTTTAAAATTAGGAACCTTGAACACATTCTCTTCCTTAGCA
130 GGTTCTCGTGACAGTCTCCACTCTTTTTAAGATTGGGAACCATGAACACATTCTCTTCATTAGGA
* * * * * * *
3025775 TACATGACATTGAGGTTTTGGTGTCGCAAAAAAAGCTTTACTTTCCAACGTGTAAGATAGACTCA
195 TACATGACATTGATGTTTTGGTGTCAC-AAAAAAGCTTTTCTTTCCAATGTTTATGATAGAATCA
* * * * *
3025840 AAGTTTGTCACTCAAATAAGGCAAATATAAATAGTCATACTAATCCCCATTCTTTTCTAGATTAG
259 AAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAG
* * * ** *
3025905 GTAGCATAAACATAGTTTTCTCATAAGGATACACGAAATGGGTGCTTTGCTTTCTTAAGAATGGC
324 GCACCATAAACATAGTCTTCTCATAAGGATACACGAAATGGGTGCTTTGCTTTCGCAAGAAAGGC
* * *
3025970 TTTCTTCCCACTAATTTTTGTAAAGTCTGAGTTCGTGCCACATATGAGACAAACATGGATTCTAG
389 TTTCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCACATATGAGACAAACATGGATTCTAG
* **
3026035 TAATGATCTTCATTCATTTTGT
454 TAATGATCTTCATTCAATTCAT
* * * * * * *
3026057 GATTATGCACTATAAACACATTCTCCTCATTAGGATAAATGACATT-ATTGATTTT-TTTTGCAT
1 GATTAAGCACTGTAAACACATTCCCCTCACTAGGATAAATGATATTGA-TGATTTTCTCTAGCAT
* * * * * * ** *
3026120 GAAAATCTTTTCTTTACCCTATTTCCCTTAAAATCAAAATTCAT-CCCTTAAATATGATGAGCTT
65 GGAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTGAAA-AAGACAAGCAT
* * * * * * * * *
3026184 TGATTCTCGTAATAGTCTTCATTC-TTTTATAGATTGGGAACCAAGAACACATTCGCTTTATTAG
129 CGGTTCTCGTGACAGTCTCCACTCTTTTTA-AGATTGGGAACCATGAACACATTCTCTTCATTAG
* * * * *
3026248 GATACATGACATTGTTGCTTCT-GTGTCGCAATAAATGCTTTTCTTTCCTCCAT-TTT-TGATAG
193 GATACATGACATTGATG-TTTTGGTGTCACAA-AAAAGCTTTTCTTT-C-CAATGTTTATGATAG
* *
3026310 AATCAAAGTTTGTCTCTCAAATAAGACAAACATGAGTAGTTATACTAATCCCCATTCTTTTCAAG
254 AATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAG
3026375 ATTAGGCACCATAA
319 ATTAGGCACCATAA
3026389 TCAAAGTTTT
Statistics
Matches: 1457, Mismatches: 274, Indels: 50
0.82 0.15 0.03
Matches are distributed among these distances:
473 5 0.00
474 453 0.31
475 983 0.67
476 14 0.01
477 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.35
Consensus pattern (475 bp):
GATTAAGCACTGTAAACACATTCCCCTCACTAGGATAAATGATATTGATGATTTTCTCTAGCATG
GAAATCTTTTCTTTCCCCTATTTTCCTTAAAATCAAAGTTCATCCCCTGAAAAAGACAAGCATCG
GTTCTCGTGACAGTCTCCACTCTTTTTAAGATTGGGAACCATGAACACATTCTCTTCATTAGGAT
ACATGACATTGATGTTTTGGTGTCACAAAAAAGCTTTTCTTTCCAATGTTTATGATAGAATCAAA
GTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGC
ACCATAAACATAGTCTTCTCATAAGGATACACGAAATGGGTGCTTTGCTTTCGCAAGAAAGGCTT
TCTTCCCACTAATTTTTGAAAAGTCTAAGTTCATGCCACATATGAGACAAACATGGATTCTAGTA
ATGATCTTCATTCAATTCAT
Found at i:3025996 original size:949 final size:948
Alignment explanation
Indices: 3024157--3026388 Score: 3460
Period size: 949 Copynumber: 2.3 Consensus size: 948
3024147 CTTCTCATAA
* * *
3024157 GGATTAAGCACTATAAACACATTCCCCTCATTAGGACAAATGATATTGATGATTTTCTCTAACCT
1 GGATTAAGCACTATAAACACATTCCCCTCATTAGGATAAATGATTTTGATTATTTTCTCTAACCT
* * *
3024222 AGAAATTTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAGATAAGCATCG
66 GGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAGATAAGCATCT
* *
3024287 GTTCTTGTTATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTTCCATTATTAGGAT
131 ATTCTTGTAATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACA-TTCC-TTATTAGGAT
* *
3024352 ACATGACATTGATGCTTTGGTGTCATAATAAAGGCCTTCCTTTCGTCCGTTTTTGATAGAATCAA
194 ACATGACATTGATGCTTTGGTGTCACAATAAAGGCCTTTCTTTCGTCCGTTTTTGATAGAATCAA
* * * *
3024417 AGTTTGTCTCTCTAATAAGACAAACATGAATAGCCATACTAATCCTCATTCTTTTCAGGATTAGG
259 AGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGG
*
3024482 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGTTGCTTTGGTTTCGCAAGAAAGGCT
324 CACCATAAACATAGTCTTCTCATAAGGATACACGATATTGCTGCTTTGGTTTCGCAAGAAAGGCT
*
3024547 TTCTTCCCCCTAATTTTTGAAAAGTTTAAGTTCATACCTCAAATGAGGCAAACATGGATTCTAGT
389 TTCTTCCCCCTAATTTTTGAAAAGTCTAAGTTCATACCTCAAATGAGGCAAACATGGATTCTAGT
* * * *
3024612 AATGATCTTCATTCAATTCATGATTAAGCACCGTAAACACATTCCCCTCGCTAGGATAAATGGTA
454 AATGATCTTCATTCAATTCATAATTAAGCACAGTAAACACATTCCCCTCACTAGGATAAATGGCA
*
3024677 TTGGCGATTTTCTCTAGCATGGAAATCTTTTTTTCCCCTATTTTGCTCAAAATCAAAGTTCATCC
519 TTGGCGATTTTCTCTAGCATGGAAATCTTTTTTTCCCCTATTTTGCTCAAAATCAAAGTTCATAC
* * *
3024742 CCTGGAGAAGACAAGCATCGGTTCTCGTGACAGTCTCCACTCTTTTTAAGATTAGGAACCTTGAA
584 CCTGAAAAAGACAAGCATCGGTTCTCGTGACAGTCTCCACTCTTTTTAAAATTAGGAACCTTGAA
* * *
3024807 CACATTCTCTTCCTTAGCATACGTAACATTGACGTTTTGGTGTCCCAAAAACAGCTTTTCTTTCC
649 CACATTCTCTTCCTTAGCATACATAACATTGACGTTTTGGTGTCCCAAAAAAAGCTTTACTTTCC
* *
3024872 AATGTTTAAGATAGACTCAAAGTTTGTCACTCAAATAAGACAAATATAAATAGTCATACTAATCC
714 AACGTGTAAGATAGACTCAAAGTTTGTCACTCAAATAAGACAAATATAAATAGTCATACTAATCC
* *
3024937 CTATTCTTTTCAGGATTAGGTAGCATAAACATAGTCTTCTCATAAGGTTACACGAAATGGGTGCC
779 CCATTCTTTTCAGGATTAGGTAGCATAAACATAGTCTTCTCATAAGGATACACGAAATGGGTGCC
*
3025002 TTGCTTTCGTAAGAATGGCTTTCTTCCCACAAATTTTTGTAAAGTCTGAGATCGTGCCACATTTG
844 TTGCTTTCGTAAGAATGGCTTTCTTCCCACAAATTTTTGTAAAGTCTGAGATCGTGCCACATATG
3025067 AGACAAACATGGATTCTACTAATGATCTT-ATTCATTTTG
909 AGACAAACATGGATTCTACTAATGATCTTCATTCATTTTG
*
3025106 GGATTAAGCACTGTAAACACATTCCCCTCA-TAGGGATAAATGATTTTGATTATTTTCTCTAACC
1 GGATTAAGCACTATAAACACATTCCCCTCATTA-GGATAAATGATTTTGATTATTTTCTCTAACC
* *
3025170 TGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCATAGTTCATCCCTTGAAAAAGACAAGCAT
65 TGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTT-AAAAAGATAAGCAT
* * *
3025235 CTATTCTTGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAATAACACATTCCTTCATTAGGA
129 CTATTCTTGTAATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTT-ATTAGGA
* *
3025300 TACATGACATTGATGCTTTGGTGTCACAATAAGGGCCTTTCTTTCGTTCGTTTTTGATAGAATCA
193 TACATGACATTGATGCTTTGGTGTCACAATAAAGGCCTTTCTTTCGTCCGTTTTTGATAGAATCA
* * * *
3025365 AAGTTTGTCTTTCAAATAAGACAAACATGAACAATCATACTAGTCCCCATTCTTTTCAAGATTAG
258 AAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAG
3025430 GCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGCTGCTTTGGTTTCGCAAGAAAGGC
323 GCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGCTGCTTTGGTTTCGCAAGAAAGGC
* * * ** *
3025495 TTTTTTCCCTCC-AATTTTTGAAAAGTCTAAGTTCATGCCTCATATGAGTTAGACATGGATTCTA
388 TTTCTTCCC-CCTAATTTTTGAAAAGTCTAAGTTCATACCTCAAATGAGGCAAACATGGATTCTA
*
3025559 GTAATGATCTTCATTCAATTCATAATTAAGCATAGTAAACACATTCCCCTCACTAGGATAAATGG
452 GTAATGATCTTCATTCAATTCATAATTAAGCACAGTAAACACATTCCCCTCACTAGGATAAATGG
* *
3025624 CATTGGTGATTTTCTCTAGCATGGAAATCTTTTTTTCCCCTATTTTGCTTAAAATCAAAGTTCAT
517 CATTGGCGATTTTCTCTAGCATGGAAATCTTTTTTTCCCCTATTTTGCTCAAAATCAAAGTTCAT
3025689 ACCCTGAAAAAGACAAGCATCGGTTCTCGTGACAGTCTCCACTCTTTTTAAAATTAGGAACCTTG
582 ACCCTGAAAAAGACAAGCATCGGTTCTCGTGACAGTCTCCACTCTTTTTAAAATTAGGAACCTTG
* * *
3025754 AACACATTCTCTTCCTTAGCATACATGACATTGAGGTTTTGGTGTCGCAAAAAAAGCTTTACTTT
647 AACACATTCTCTTCCTTAGCATACATAACATTGACGTTTTGGTGTCCCAAAAAAAGCTTTACTTT
*
3025819 CCAACGTGTAAGATAGACTCAAAGTTTGTCACTCAAATAAGGCAAATATAAATAGTCATACTAAT
712 CCAACGTGTAAGATAGACTCAAAGTTTGTCACTCAAATAAGACAAATATAAATAGTCATACTAAT
*
3025884 CCCCATTCTTTTCTA-GATTAGGTAGCATAAACATAGTTTTCTCATAAGGATACACGAAATGGGT
777 CCCCATTCTTTTC-AGGATTAGGTAGCATAAACATAGTCTTCTCATAAGGATACACGAAATGGGT
* * * *
3025948 GCTTTGCTTTCTTAAGAATGGCTTTCTTCCCACTAATTTTTGTAAAGTCTGAGTTCGTGCCACAT
841 GCCTTGCTTTCGTAAGAATGGCTTTCTTCCCACAAATTTTTGTAAAGTCTGAGATCGTGCCACAT
*
3026013 ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
906 ATGAGACAAACATGGATTCTACTAATGATCTTCATTCATTTTG
* * * *
3026056 TGATTATGCACTATAAACACATTCTCCTCATTAGGATAAATGACATTATTGATT-TTTT-T-T-G
1 GGATTAAGCACTATAAACACATTCCCCTCATTAGGATAAATG--ATT-TTGATTATTTTCTCTAA
* * * * * * * *
3026117 CATGAAAATCTTTTCTTTACCCTATTTCCCTTAAAATCAAAATTCATCCCTTAAATATGATGAGC
63 CCTGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA-AAGATAAGC
* * * *
3026182 -TTTGATTCTCGTAATAGTCTTCATTCTTTT-ATAGATTGGGAACCAAGAACACATTCGCTTTAT
127 ATCT-ATTCTTGTAATAGTCTCCACTCTTTTCA-AGATTGGGAACCAAGAACACATTC-C-TTAT
* * * * * *
3026245 TAGGATACATGACATTGTTGCTTCT-GTGTCGCAATAAATGCTTTTCTTTCCTCCATTTTTGATA
188 TAGGATACATGACATTGATGCTT-TGGTGTCACAATAAAGGCCTTTCTTTCGTCCGTTTTTGATA
* *
3026309 GAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAGTAGTTATACTAATCCCCATTCTTTTCAA
252 GAATCAAAGTTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAA
3026374 GATTAGGCACCATAA
317 GATTAGGCACCATAA
3026389 TCAAAGTTTT
Statistics
Matches: 1169, Mismatches: 98, Indels: 31
0.90 0.08 0.02
Matches are distributed among these distances:
948 10 0.01
949 901 0.77
950 239 0.20
951 6 0.01
952 7 0.01
953 6 0.01
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (948 bp):
GGATTAAGCACTATAAACACATTCCCCTCATTAGGATAAATGATTTTGATTATTTTCTCTAACCT
GGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAGATAAGCATCT
ATTCTTGTAATAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTATTAGGATAC
ATGACATTGATGCTTTGGTGTCACAATAAAGGCCTTTCTTTCGTCCGTTTTTGATAGAATCAAAG
TTTGTCTCTCAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCA
CCATAAACATAGTCTTCTCATAAGGATACACGATATTGCTGCTTTGGTTTCGCAAGAAAGGCTTT
CTTCCCCCTAATTTTTGAAAAGTCTAAGTTCATACCTCAAATGAGGCAAACATGGATTCTAGTAA
TGATCTTCATTCAATTCATAATTAAGCACAGTAAACACATTCCCCTCACTAGGATAAATGGCATT
GGCGATTTTCTCTAGCATGGAAATCTTTTTTTCCCCTATTTTGCTCAAAATCAAAGTTCATACCC
TGAAAAAGACAAGCATCGGTTCTCGTGACAGTCTCCACTCTTTTTAAAATTAGGAACCTTGAACA
CATTCTCTTCCTTAGCATACATAACATTGACGTTTTGGTGTCCCAAAAAAAGCTTTACTTTCCAA
CGTGTAAGATAGACTCAAAGTTTGTCACTCAAATAAGACAAATATAAATAGTCATACTAATCCCC
ATTCTTTTCAGGATTAGGTAGCATAAACATAGTCTTCTCATAAGGATACACGAAATGGGTGCCTT
GCTTTCGTAAGAATGGCTTTCTTCCCACAAATTTTTGTAAAGTCTGAGATCGTGCCACATATGAG
ACAAACATGGATTCTACTAATGATCTTCATTCATTTTG
Found at i:3031354 original size:13 final size:13
Alignment explanation
Indices: 3031336--3031363 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
3031326 ACAACATTCC
3031336 TTGTATCGATACA
1 TTGTATCGATACA
3031349 TTGTATCGATACA
1 TTGTATCGATACA
3031362 TT
1 TT
3031364 AGGTACTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3033966 original size:13 final size:13
Alignment explanation
Indices: 3033945--3033975 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3033935 CGATACATGG
*
3033945 TACAATGTATCGA
1 TACATTGTATCGA
3033958 TACATTGTATCGA
1 TACATTGTATCGA
3033971 TACAT
1 TACAT
3033976 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:3033971 original size:33 final size:32
Alignment explanation
Indices: 3033929--3033997 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 32
3033919 CTATCACTAT
3033929 TTGTATCGATACATG-GTACAATGTATCGATACA
1 TTGTATCGATACATGAG-A-AATGTATCGATACA
3033962 TTGTATCGATACATGAAGAAATGTATCGATACA
1 TTGTATCGATACATG-AGAAATGTATCGATACA
3033995 TTG
1 TTG
3033998 CTTGTAACGG
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 32 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (32 bp):
TTGTATCGATACATGAGAAATGTATCGATACA
Found at i:3035623 original size:476 final size:477
Alignment explanation
Indices: 3034720--3036669 Score: 2338
Period size: 476 Copynumber: 4.1 Consensus size: 477
3034710 CTTGAGCTTT
* * * * *
3034720 CAAACTTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATTAA-CACATTCTGC
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACT-GTAATCACATTC-CC
* * * * * *
3034784 -TCAATAGGATAAATGATATTAATGATTTTCTCTAGCGTGGAAATCTTTTCATTGCCCTATTCTC
64 TTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTC
* * *
3034848 CTTAAAATCAAAGTTCAT-CCTGTGAAAAAGGCGAGCATCGATTCTCAT-GACAATCTCCACCCT
129 CTTAAAATCAAAGTTCATCCCT-TGAAAAAGACAAGCATCGATTCTCTTAGACAATCTCCACCCT
* * * * * *
3034911 TTTTAAGATTAGGAATCAATAACACATTCCCTTCATTATGATACGTGACATTGATGCTTTGGTGT
193 TTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
** * * * *
3034976 CGCTATAAAAGCTATTCTTTCCACAGTTTTTGATAAAATCAAAGTTTTTCACTCAAATAAGATAA
258 CGAAATAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTCAAATAAGACAA
* **
3035041 ACATGAATAGTCATACTAATCCCTATTCTTTCCAAGATTA-GCAAGTATAAACATAGTCTTCTCA
323 ACATGAATAGTCATACTAATCCCCATTCTTTCCAAGATTAGGC-ACCATAAACATAGTCTTCTCA
* **
3035105 TAAGGATATACGATATTGACGCCTTGGTTTCGCAAGAAAGGCTTTCTTCCCAATAATTTTTGAAA
387 TAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAA
3035170 AGTCTAAGTTCGTGCCTCAAATGAGA
452 AGTCTAAGTTCGTGCCTCAAATGAGA
* * * *
3035196 CAAACATGGACTCTAGTAATGATCTTTATTCATTTCGTGATTAGCCACTGCAATCACATTCCCTT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAATCACATTCCCTT
* * * * * *
3035261 CATTAGGATAAATAATATTGATGATCTTCTCTCGCATGGAAATCATTTCTTTGCCCTATTTTTCT
66 CATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * * *
3035326 TAAAATAAAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTC-GAGACAATCTCCACTCTTTT
131 TAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCTTAGACAATCTCCACCCTTTT
* *
3035390 CAAGATTGGGAATCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
196 CAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGA
* * * *
3035455 TACAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTAAAATAAGAGAAACA
261 AATAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTCAAATAAGACAAACA
* * *
3035520 TGAA-AGGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTTTCATAA
326 TGAATA-GTCATACTAATCCCCATTCTTTCCAAGATTAGGCACCATAAACATAGTCTTCTCATAA
* * * *
3035584 GGATATATGATGTTGATGTTTTGGTTTCGCAAGAAAGGCTTTCTTCTCCCC-AATTTTTGAAAAG
390 GGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCCTAATTTTTGAAAAG
* *
3035648 TCTAAGTTTGTGCCTCAAATGGGA
454 TCTAAGTTCGTGCCTCAAATGAGA
* * * * * * *
3035672 CAAACATGGACTCTATTAATGATCTTCATTCATTTCGTGAATAGGCACTATAAACACGTTCCCCT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAATCACATTCCCTT
* *
3035737 CATTAGGATAAATGATATTGATGGTTTTCTCTAACATGAAAATCTTTTCTTTGCCCTATTTTCCT
66 CATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * * * * * * *
3035802 TAAATTCAAAGTTTATCCCTCGAAAAAGACCAGCATCGATAC-CTTTGACAATTTCCACTCTTTT
131 TAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCTTAGACAATCTCCACCCTTTT
* * *
3035866 CAAGATTGGGAACCAAGAACACATTCCCTTCTTTATGATACATGACATTGATGTTTTGGTGTCGA
196 CAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGA
* * * *
3035931 AATAAAGGCT-TTCCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCCCAAATAAGACAAAC
261 AATAAAAGCTATT-CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTCAAATAAGACAAAC
** * * * * *
3035995 ATGAATAGTCATACTAATCCCTTTTCTTTTCAGGATTACGCACCATGAACATAGTCTTCTCATTA
325 ATGAATAGTCATACTAATCCCCATTCTTTCCAAGATTAGGCACCATAAACATAGTCTTCTCATAA
* * * ** * *
3036060 GGATACACGATAATGATGCTTTGGTTTCAAAAGAAAGGCTTTCTTCCCCCTAATTTTCGTAAAGT
390 GGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAAAGT
* **
3036125 CTAAGTTCGTGCTTCAAAAAAGA
455 CTAAGTTCGTGCCTCAAATGAGA
* * * ** * * * *
3036148 CAAACCTAGATTCTAG--AT-A--TTCATTCATTTTGTCTTTAGGCACTATTAA-CA-TTTTCAT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACT-GTAATCACATTCCCT
* *
3036206 CTCTTTAGGGA-AAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCCTTGCCCTATTTT
65 -TCATTA-GGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTT
* * * ***
3036270 CCTTAAAATCAAAGTTCTTCCCATGAAAATGACAAGCATCGATTCTCTTAG-TTGTCTCCACCCT
128 CCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCTTAGACAATCTCCACCCT
* * * * * *
3036334 TTTTAAGATTGGGAACCAAGAACACATTCCCTTCCTGAGGATAAATTACATTGATGCTTTGGTCT
193 TTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * ** *
3036399 CAAAAGAAAAGCTTTTCTTTCCTTCGTTTTTGATGGAATCAAAGTTTGTCAC-CTAAATAAGACA
258 CGAAATAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTC-AAATAAGACA
* * * *
3036463 AACATTAATAGTCATGCTAATCCTCATTCTTTCCAAGATTAGGCACCATAAACATAGTCTTTTCA
322 AACATGAATAGTCATACTAATCCCCATTCTTTCCAAGATTAGGCACCATAAACATAGTCTTCTCA
* * * *
3036528 CAAGGATATATGATATTGACGCTTTCGTTTCGCAGGAAAGGCTTTCTTCCCCCTAATTTTTGAAA
387 TAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAA
* ** *
3036593 AGTCTAAGATCAAGCCTAAAATGAGA
452 AGTCTAAGTTCGTGCCTCAAATGAGA
* * * *
3036619 CGAACATGAATTCTAGTTATGATCTTCATTTATTTCGTGATTAGGCACTGT
1 CAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGT
3036670 CACCACTAAT
Statistics
Matches: 1256, Mismatches: 196, Indels: 45
0.84 0.13 0.03
Matches are distributed among these distances:
470 4 0.00
471 370 0.29
472 12 0.01
473 3 0.00
474 3 0.00
475 12 0.01
476 844 0.67
477 8 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (477 bp):
CAAACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTGTAATCACATTCCCTT
CATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
TAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCTTAGACAATCTCCACCCTTTT
CAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGA
AATAAAAGCTATTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCACTCAAATAAGACAAACA
TGAATAGTCATACTAATCCCCATTCTTTCCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
GATATACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAAAGTC
TAAGTTCGTGCCTCAAATGAGA
Found at i:3036688 original size:95 final size:95
Alignment explanation
Indices: 3036580--3036757 Score: 268
Period size: 95 Copynumber: 1.9 Consensus size: 95
3036570 TTTCTTCCCC
* *
3036580 CTAATTTTTGAAAAGTCTAAGATC-AAGCCTAAAATGAGACGAACATGAATTCTAGTTATGATCT
1 CTAATTTTTGAAAAGTCTAAGATCGAA-CCTAAAATGAGACAAACATGAATTCTAGTAATGATCT
*
3036644 TCATTTATTTCGTGATTAGGCACTGTCACCA
65 TCATTCATTTCGTGATTAGGCACTGTCACCA
* * * *
3036675 CTAATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
1 CTAATTTTTGAAAAGTCTAAGATCGAACCTAAAATGAGACAAACATGAATTCTAGTAATGATCTT
*
3036740 TATTCATTTCGTGATTAG
66 CATTCATTTCGTGATTAG
3036758 CTATTGCAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
95 73 0.99
96 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (95 bp):
CTAATTTTTGAAAAGTCTAAGATCGAACCTAAAATGAGACAAACATGAATTCTAGTAATGATCTT
CATTCATTTCGTGATTAGGCACTGTCACCA
Found at i:3037571 original size:474 final size:475
Alignment explanation
Indices: 3036675--3037630 Score: 1262
Period size: 474 Copynumber: 2.0 Consensus size: 475
3036665 ACTGTCACCA
3036675 CTAATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
1 CTAATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* * * * * * * *
3036740 TATTCATTTCGTGATTAGCTATTGCAAACACATTCCCTTCATTAGGATAAATAATATTGATGATC
66 CACTCATTTCATGATTAGCTACTACAAACACAATCCCTTCATTAGGACAAATAAGATTGATGATC
* * * * *
3036805 TTCTCTCGCATGGAAATCATTTCTTTGCCTTATTTTCCATAAAATCAAAGTTCATCAGTTGAAAA
131 TTCTCTAGCATGAAAATCATTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCAACACTTGAAAA
*
3036870 AGACAAGCATCGATTCCTGTGACAATCTCCACCTTTTTCAAGATTGGGAACCAAGAACACATTCT
196 AGACAAGCATCGATTCCTATGACAATCTCCACCTTTTTCAAGATTGGGAACCAAGAACACATTCT
** * * * *
3036935 CTTCTATAGGATACATGACATTGTTGCTTTGCTATCATAGTAAAGGCTTTGCTTTCATCCGTTTT
261 CTTCTATAGGATACATGACATTGAAGCTTTGCTATCACAATAAAGGCTTTGCTTTCAACCATTTT
* * * * *
3037000 TGACATAATCAAACTTTATCTCTCAAATAAGAGAAACGTGAATAGTTATACTAATCCCCATGCTT
326 TAACAGAATCAAACTTTATCTCTCAAATAAGAGAAACATGAATAGTCACACTAATCCCCATGCTT
* ** * * * *
3037065 TTGAGGATTGGGCACCATAAACATAGTCTTCTCATAGGGACACACGATATTGATGCTTTGGTTTT
391 TTCAGGATTACGCACCATAAACATAGTCTTCTCACAAGGACACACGATAATGATGCTTTGGTTTC
* **
3037130 GCAAGAAAGGCTTTCTTCCCC
456 GAAAGAAAGGCTTT-TAACCC
*
3037151 CTAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
1 CTAATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
* * *
3037216 CACTCATTTCATGATTAAGC-ACTATAAACACAAT-CCTCTCATTAGGGCAAATTAGATTGATGA
66 CACTCATTTCATGATT-AGCTACTACAAACACAATCCCT-TCATTAGGACAAATAAGATTGATGA
* * ** * *
3037279 TTTTCTCTAGCTTGAAAATGTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTGAA
129 TCTTCTCTAGCATGAAAATCATTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCAACACTTGAA
* *
3037344 AAA-A-AAGCATCGATT-CTCATGATAGTCTCCACCTTTTTCAAGATTGGGAACCAAGAACACAT
194 AAAGACAAGCATCGATTCCT-ATGACAATCTCCACCTTTTTCAAGATTGGGAACCAAGAACACAT
* * *
3037406 TCTCTT-TATTAGGATACATGACATTGAAGCTTT-CGTGTCGCAATAAAGGCTTTTCTTTCAACC
258 TCTCTTCTA-TAGGATACATGACATTGAAGCTTTGC-TATCACAATAAAGGCTTTGCTTTCAACC
* * * *
3037469 ATTTTTAATAGAATCAAAGTTTGTCTCTCAAGA-AAGATAAACATGAATAGTCACACTAATCCCC
321 ATTTTTAACAGAATCAAACTTTATCTCTCAA-ATAAGAGAAACATGAATAGTCACACTAATCCCC
* * * *
3037533 TTTCTTTTCAGGATTACGCACCATGAACATAGTCTTCTCACAAGGATACACGATAATGATGCTTT
385 ATGCTTTTCAGGATTACGCACCATAAACATAGTCTTCTCACAAGGACACACGATAATGATGCTTT
*
3037598 GGTTTCGAAAGAAAGTCTTTTAACCC
450 GGTTTCGAAAGAAAGGCTTTTAACCC
3037624 CTAATTT
1 CTAATTT
3037631 CTGATAGACT
Statistics
Matches: 415, Mismatches: 59, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
473 16 0.04
474 226 0.54
475 5 0.01
476 165 0.40
477 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (475 bp):
CTAATTTTTGAAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
CACTCATTTCATGATTAGCTACTACAAACACAATCCCTTCATTAGGACAAATAAGATTGATGATC
TTCTCTAGCATGAAAATCATTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCAACACTTGAAAA
AGACAAGCATCGATTCCTATGACAATCTCCACCTTTTTCAAGATTGGGAACCAAGAACACATTCT
CTTCTATAGGATACATGACATTGAAGCTTTGCTATCACAATAAAGGCTTTGCTTTCAACCATTTT
TAACAGAATCAAACTTTATCTCTCAAATAAGAGAAACATGAATAGTCACACTAATCCCCATGCTT
TTCAGGATTACGCACCATAAACATAGTCTTCTCACAAGGACACACGATAATGATGCTTTGGTTTC
GAAAGAAAGGCTTTTAACCC
Found at i:3038248 original size:636 final size:632
Alignment explanation
Indices: 3037024--3038248 Score: 1647
Period size: 636 Copynumber: 1.9 Consensus size: 632
3037014 TTTATCTCTC
* * * * *
3037024 AAATAAGAGAAACGTGAATAGTTATACTAATCCCCATGCTTTTGAGGATTGGGCACCATAAACAT
1 AAATAAGAGAAACATGAATAGTCATACTAATCCCCATGCTTTTCAAGATTGGGCACCAAAAACAT
* * *
3037089 AGTCTTCTCATAGGGACACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCCCTA
66 AGTCTTCTCATAAGGACACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTA
* *
3037154 ATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAC
131 ATTTTTGAAAAATCTAAGTTCGTGCCTCAAATGACACAAACATGGATTCTAGTAATGATCTTCAC
* * *
3037219 TCATTTCATGATTAAGCACTATAAACACAATCCTCTCATTAGGGCAAATTAGATTGATGATTTTC
196 TCATTTCATGATTAAGCACTATAAACACAATCCCCTCATTAGGACAAATGAGATTGATGATTTTC
* *
3037284 TCTAGCTTGAAAATGTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTGAAAAAAA
261 TCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTGAAAAAAA
* * * * * * *
3037349 AGCATCGATTCTCATGATAGTCTCCACCTTTTTCAAGATTGGGAACCAAGAACACATTCTCTTTA
326 AGCATCGATTCTCATAATAGCCTCCACCTTTTTCAAGATTGAGAACCAAAAACAAATTCCCTTCA
*
3037414 TTAGGATACATGACATTGAAGCTTTCGTGTCGCAATAAAGGCTTTTCTTTCAACCATTTTTAATA
391 ATAGGATACATGACATTGAAGCTTTCGTGTCGCAATAAAGGCTTTTCTTTCAACCATTTTTAATA
* * * * *
3037479 GAATCAAAGTTTGTCTCTCAAGAAAGATAAACATGAATAGTCACACTAATCCCCTTTCTTTTCAG
456 GAATCAAAGTTTGTCACTCAAAAAAGAGAAACATGAATAGCCACACTAATCCCCATTCTTTTCAG
* * *
3037544 GATTACGCACCATGAACATAGTCTTCTCACAAGGATACACGATAATGATGCTTTGGTTTCGAAAG
521 GATTACGCACCATAAACATAGCCTTCTAACAAGGATACACGATAATGATGCTTTGGTTTCGAAAG
3037609 AAAGTCTTTTAACCCCTAATTTCTGATAGACTTAAAGTTTGTCACCT
586 AAAGTCTTTTAACCCCTAATTTCTGATAGACTTAAAGTTTGTCACCT
*
3037656 AAATAAG-GCAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGG-ACCAAAAAC
1 AAATAAGAG-AAACATGAATAGTCATACTAATCCCCATGCTTTTCAAGATT-GGGCACCAAAAAC
* * * * *
3037719 ATAGTCTTCTTATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAATGCTTTCTT-CCTC
64 ATAGTCTTCTCATAAGGACACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCC
*
3037783 TGAATTTTTTAAAAATCTAAGTTCGTGCCTCAAATGACACAAACATGGATTCTAGTAATGATCTT
129 T-AATTTTTGAAAAATCTAAGTTCGTGCCTCAAATGACACAAACATGGATTCTAGTAATGATCTT
* * * * ** * ** * *
3037848 CATTCATTTCGTGATTAGGCACACTGTAAACGTATTCCCCTCATTTTGATAAATGATATTGATGA
193 CACTCATTTCATGATTAAG--CACTATAAACACAATCCCCTCATTAGGACAAATGAGATTGATGA
* * * * *
3037913 TTTTCTTTAGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAGTCGAAGTTCATCCCTTGAA
256 TTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTGAA
** *
3037978 AAAGATAAGCATCGATTCTGGTAATAGCCTCCA-CTCTTTTCAAGATTGAGAATCAAAAACAAAT
321 AAA-A-AAGCATCGATTCTCATAATAGCCTCCACCT-TTTTCAAGATTGAGAACCAAAAACAAAT
* * * * *
3038042 TCCCTTCAATAGGATATATGACATTGATGCTTTGGTGTCGCTATGAAA-G-TTATTCTTTCCACC
383 TCCCTTCAATAGGATACATGACATTGAAGCTTTCGTGTCGCAAT-AAAGGCTT-TTCTTTCAACC
* * *
3038105 GTTTTTCATAGAATCAAAGTTTGTCACT-AAAATAAGAGAAACATGAATAGCCATACTAATCCCC
446 ATTTTTAATAGAATCAAAGTTTGTCACTCAAAA-AAGAGAAACATGAATAGCCACACTAATCCCC
* * * *
3038169 ATTCTTTTCAGGATTAGGCACCGA-AAACATAGCCTTCTAATAAGGATATACGATATTGATGCTT
510 ATTCTTTTCAGGATTACGCACC-ATAAACATAGCCTTCTAACAAGGATACACGATAATGATGCTT
* *
3038233 TGGTTTTGCAAGAAAG
574 TGGTTTCGAAAGAAAG
3038249 GCCTTTTTCT
Statistics
Matches: 510, Mismatches: 71, Indels: 20
0.85 0.12 0.03
Matches are distributed among these distances:
631 5 0.01
632 180 0.35
633 3 0.01
634 94 0.18
635 8 0.02
636 216 0.42
637 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (632 bp):
AAATAAGAGAAACATGAATAGTCATACTAATCCCCATGCTTTTCAAGATTGGGCACCAAAAACAT
AGTCTTCTCATAAGGACACACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTA
ATTTTTGAAAAATCTAAGTTCGTGCCTCAAATGACACAAACATGGATTCTAGTAATGATCTTCAC
TCATTTCATGATTAAGCACTATAAACACAATCCCCTCATTAGGACAAATGAGATTGATGATTTTC
TCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTGAAAAAAA
AGCATCGATTCTCATAATAGCCTCCACCTTTTTCAAGATTGAGAACCAAAAACAAATTCCCTTCA
ATAGGATACATGACATTGAAGCTTTCGTGTCGCAATAAAGGCTTTTCTTTCAACCATTTTTAATA
GAATCAAAGTTTGTCACTCAAAAAAGAGAAACATGAATAGCCACACTAATCCCCATTCTTTTCAG
GATTACGCACCATAAACATAGCCTTCTAACAAGGATACACGATAATGATGCTTTGGTTTCGAAAG
AAAGTCTTTTAACCCCTAATTTCTGATAGACTTAAAGTTTGTCACCT
Found at i:3038384 original size:636 final size:631
Alignment explanation
Indices: 3037024--3038385 Score: 1522
Period size: 636 Copynumber: 2.1 Consensus size: 631
3037014 TTTATCTCTC
* * * * * * * * * * *
3037024 AAATAAGAGAAACGTGAATAGTTATACTAATCCCCATGCTTTTGAGGATTGGGCACCATAAACAT
1 AAATAAGACAAACATGAATAG-TATAATAATCCCCATTCATTTCAAGAATAGGCACCAAAAACAC
** * * * * * *
3037089 AGTCTTCTCATAGGGACACACGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCCCTA
65 AGTCCCCTTATAAGGATAAACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTA
* *
3037154 ATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAC
130 ATTTTTGAAAAATCTAAGTTCGTGCCTCAAATGACACAAACATGGATTCTAGTAATGATCTTCAC
* * *
3037219 TCATTTCATGATTAAGCACTATAAACACAATCCTCTCATTAGGGCAAATTAGATTGATGATTTTC
195 TCATTTCATGATTAAGCACTATAAACACAATCCCCTCATTAGGACAAATGAGATTGATGATTTTC
* *
3037284 TCTAGCTTGAAAATGTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTGAAAAAAA
260 TCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTGAAAAAAA
* * * * * * *
3037349 AGCATCGATTCTCATGATAGTCTCCACCTTTTTCAAGATTGGGAACCAAGAACACATTCTCTTTA
325 AGCATCGATTCTCATAATAGCCTCCACCTTTTTCAAGATTGAGAACCAAAAACAAATTCCCTTCA
*
3037414 TTAGGATACATGACATTGAAGCTTTCGTGTCGCAATAAAGGCTTTTCTTTCAACCATTTTTAATA
390 ATAGGATACATGACATTGAAGCTTTCGTGTCGCAATAAAGGCTTTTCTTTCAACCATTTTTAATA
* * * * *
3037479 GAATCAAAGTTTGTCTCTCAAGAAAGATAAACATGAATAGTCACACTAATCCCCTTTCTTTTCAG
455 GAATCAAAGTTTGTCACTCAAAAAAGAGAAACATGAATAGCCACACTAATCCCCATTCTTTTCAG
* * *
3037544 GATTACGCACCATGAACATAGTCTTCTCACAAGGATACACGATAATGATGCTTTGGTTTCGAAAG
520 GATTACGCACCATAAACATAGCCTTCTAACAAGGATACACGATAATGATGCTTTGGTTTCGAAAG
* * * *
3037609 AAAGTCTTTTAACCCCTAATTTCTGATAGACTTAAAGTTTGTCACCT
585 AAAGCCTTTTAACCCCCAATTTCTGAAAGACTTAAAGTTCGTCACCT
* * * * * *
3037656 AAATAAGGCAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGGACCAAAAACAT
1 AAATAAGACAAACATGAATAGT-ATAATAATCCCCATTCATTTCAAGAATAGGCACCAAAAACAC
** * * *
3037721 AGTCTTCTTATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAATGCTTTCTT-CCTCTG
65 AGTCCCCTTATAAGGATAAACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCT-
*
3037785 AATTTTTTAAAAATCTAAGTTCGTGCCTCAAATGACACAAACATGGATTCTAGTAATGATCTTCA
129 AATTTTTGAAAAATCTAAGTTCGTGCCTCAAATGACACAAACATGGATTCTAGTAATGATCTTCA
* * * * ** * ** * *
3037850 TTCATTTCGTGATTAGGCACACTGTAAACGTATTCCCCTCATTTTGATAAATGATATTGATGATT
194 CTCATTTCATGATTAAG--CACTATAAACACAATCCCCTCATTAGGACAAATGAGATTGATGATT
* * * * *
3037915 TTCTTTAGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAGTCGAAGTTCATCCCTTGAAAA
257 TTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTGAAAA
** *
3037980 AGATAAGCATCGATTCTGGTAATAGCCTCCA-CTCTTTTCAAGATTGAGAATCAAAAACAAATTC
322 A-A-AAGCATCGATTCTCATAATAGCCTCCACCT-TTTTCAAGATTGAGAACCAAAAACAAATTC
* * * * * *
3038044 CCTTCAATAGGATATATGACATTGATGCTTTGGTGTCGCTATGAAA-G-TTATTCTTTCCACCGT
384 CCTTCAATAGGATACATGACATTGAAGCTTTCGTGTCGCAAT-AAAGGCTT-TTCTTTCAACCAT
* *
3038107 TTTTCATAGAATCAAAGTTTGTCACT-AAAATAAGAGAAACATGAATAGCCATACTAATCCCCAT
447 TTTTAATAGAATCAAAGTTTGTCACTCAAAA-AAGAGAAACATGAATAGCCACACTAATCCCCAT
* * * *
3038171 TCTTTTCAGGATTAGGCACCGA-AAACATAGCCTTCTAATAAGGATATACGATATTGATGCTTTG
511 TCTTTTCAGGATTACGCACC-ATAAACATAGCCTTCTAACAAGGATACACGATAATGATGCTTTG
* * * * * *
3038235 GTTTTGCAAGAAAGGCCTTTT-TCTCCCCAATTTTTGAAA-AGTCT-AAGTTCGT-GCCT
575 GTTTCGAAAGAAA-GCCTTTTAAC-CCCCAATTTCTGAAAGACT-TAAAGTTCGTCACCT
* * * * ** * * *
3038291 CAAATAAGACAAATATAGACTCTGT-TAATGATCTTCATTCATTTCATGAATAGGCACTATAAAC
1 -AAATAAGACAAACAT-GAAT-AGTATAATAATCCCCATTCATTTCAAGAATAGGCACCAAAAAC
* * *
3038355 ACATTCCCCTTATTAGGATAAATGATATTGA
63 ACAGTCCCCTTATAAGGATAAACGATATTGA
3038386 TGGTTTTTTC
Statistics
Matches: 610, Mismatches: 103, Indels: 30
0.82 0.14 0.04
Matches are distributed among these distances:
631 5 0.01
632 181 0.30
634 94 0.15
635 11 0.02
636 291 0.48
637 26 0.04
638 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (631 bp):
AAATAAGACAAACATGAATAGTATAATAATCCCCATTCATTTCAAGAATAGGCACCAAAAACACA
GTCCCCTTATAAGGATAAACGATATTGACGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAA
TTTTTGAAAAATCTAAGTTCGTGCCTCAAATGACACAAACATGGATTCTAGTAATGATCTTCACT
CATTTCATGATTAAGCACTATAAACACAATCCCCTCATTAGGACAAATGAGATTGATGATTTTCT
CTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTGAAAAAAAA
GCATCGATTCTCATAATAGCCTCCACCTTTTTCAAGATTGAGAACCAAAAACAAATTCCCTTCAA
TAGGATACATGACATTGAAGCTTTCGTGTCGCAATAAAGGCTTTTCTTTCAACCATTTTTAATAG
AATCAAAGTTTGTCACTCAAAAAAGAGAAACATGAATAGCCACACTAATCCCCATTCTTTTCAGG
ATTACGCACCATAAACATAGCCTTCTAACAAGGATACACGATAATGATGCTTTGGTTTCGAAAGA
AAGCCTTTTAACCCCCAATTTCTGAAAGACTTAAAGTTCGTCACCT
Found at i:3038642 original size:476 final size:472
Alignment explanation
Indices: 3037642--3039747 Score: 2139
Period size: 476 Copynumber: 4.4 Consensus size: 472
3037632 TGATAGACTT
* *
3037642 AAAGTTTGTCACCTAAATAAGGCAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTA
1 AAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTA
* * * *
3037707 GGGACCAAAAACATAGTCTTCTTATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAATG
66 GGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGG
** * * * *
3037772 CTTTCTTCCTCTGAATTTTTTAAAAATCTAAGTTCGTGCCTCAAATGACACAAACATGGATTCTA
131 CTTTCTTCC-CCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATAACACAAACATAGATTCTA
* * ** **
3037837 GTAATGATCTTCATTCATTTCGTGATTAGGCACACTGTAAACGTATTCCCCTCATTTTGATAAAT
195 GTTATGATCTTCATTCATTTCGTGATTAGG--CACTATAAACACATTCCCCTCATTAGGATAAAT
* * * * *
3037902 GATATTGATGATTTTCTTTAGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTAAAGTCGAAGTT
258 GATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACTT
* * *
3037967 CATCCCTTGAAAAAGATAAGCATCGATTC-TGGTAATAGCCTCCACTCTTTTCAAGATTGAGAAT
323 CATCCCTCGAAAAAGATAAGCATCGATTCTTGG---TAGTCTCCACTCTTTTCAAGATTG-GGAT
* * * ***
3038031 CAAAAACAAATTCCCTTCAATAGGATATATGACATTGATGCTTTGGTGTCGCTATGAAA-G-TTA
384 CAAGAACAAATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAAAAT-AAAGGCTT-
* * *
3038094 TTCTTTCCACCGTTTTTCATAGAATC
447 TTCTTTCAACCGTTTTTGATCGAATC
* * * *
3038120 AAAGTTTGTCACTAAAATAAGAGAAACATGAATAGCCATACTAATCCCCATTCTTTTCAGGATTA
1 AAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTA
* * * *
3038185 GGCACCGA-AAACATAGCCTTCTAATAAGGATATACGATATTGATGCTTTGGTTTTGCAAGAAAG
66 GGCACC-ATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAG
* * *
3038249 GCCTTT-TTCTCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATAAGACAAATATAGACTC
130 G-CTTTCTTC-CCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATAACACAAACATAGATTC
* * *
3038313 T-GTTAATGATCTTCATTCATTTCATGAATAGGCACTATAAACACATTCCCCTTATTAGGATAAA
193 TAGTT-ATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAA
* * ** * * *
3038377 TGATATTGATGGTTTTTTCTAATATGGAAATATTTTCTTTGCCCTATTTGCCTTAAAATCAAACT
257 TGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACT
* * * ** *
3038442 TCATCCCTCGAAAAAGACAAGCATTGATTCAATTGGTAGTTTCCACTC-CCTCTAGGATTGGGAT
322 TCATCCCTCGAAAAAGATAAGCATCGATTC--TTGGTAGTCTCCACTCTTTTC-AAGATTGGGAT
* * * *
3038506 CCAAGCACACATTCCCTTTATTAGGATACATGACATTGATGCATTGGTGTCAAAATAAAGGCTTT
384 -CAAGAACAAATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAAAATAAAGGCTTT
* * * *
3038571 CCTTTGAACTGTTTTTGATCTAATC
448 TCTTTCAACCGTTTTTGATCGAATC
* * *** *
3038596 AAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATGCTAATCCTTTTTCTTTTCAGGATTA
1 AAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTA
* * * * * * * **
3038661 CGCACCATGAACATAGTC-TCGTCATTAGGATACACGATAATGATGCTTTGATTTCAAAAGAAAG
66 GGCACCATAAACATAGTCTTC-TCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAG
* * * *
3038725 GCTTTCTTCCCCCTAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAA-AGAGACAAACCTAGATTC
130 GCTTTCTTCCCCC-AATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATA-ACACAAACATAGATTC
** * * ** ** * *
3038789 TAG--AT-A--TTCATTCATTTTC-TCTTTAGGCATTATTAACATTTTCATCTCTTTAGGGTAAA
193 TAGTTATGATCTTCATTCA-TTTCGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAA
* * * * * *
3038848 TGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTACCTTATTTTCTTTAAAGTCGAACT
257 TGATATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACT
3038913 TCATCCCTTC-AAAAAGATAAGCATCGATTC-TGGTAACAGTCTCCACTCTTTTCAAGATTGGGA
322 TCATCCC-TCGAAAAAGATAAGCATCGATTCTTGGT---AGTCTCCACTCTTTTCAAGATTGGG-
* * * * * *
3038976 ATCAAGAACAAATTCCCTTCATTAGGATATATGGCATTGATGCTTTGATCTCAAAAGAAAAGCTT
382 ATCAAGAACAAATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAAAATAAAGGCTT
**** *
3039041 TTCTTTCCTTTGTTTTTGATGGAATC
447 TTCTTTCAACCGTTTTTGATCGAATC
* ** *
3039067 AAAGTTTGTCACTTAAATAGGACAAACATGAATAGTCATACTAATCCTTATTCTTTCCAAGATTA
1 AAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTA
* * * *
3039132 GGCACCATAAACATAGTCTTCTCATAAGCATATATGATGTTGACGCTTTGGTTTCGCAAGAAAAG
66 GGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGG
* * * * *
3039197 CTTTCTTCCTACTAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGACACAAACATGGATTCTA
131 CTTTCTTCC-CCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATAACACAAACATAGATTCTA
* * * *
3039262 GTTATGATCTTTATTCATTTCGTGATTAGGCACTCTAAACACATTCTCCTCATTAGGATAAATAA
195 GTTATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGA
* ** * * * * * * *
3039327 TATTGACGATTTTCTCTCTCATGGAAATCGTTTATTTGCCTTATTTTTCATAAAATCAAAGTTCA
260 TATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACTTCA
* * * * * * *
3039392 TCACT-TAAAAA-AAAAGAATCGATTCTTGTGACAATCTCCAC-CTTTTTCAAGATTGGGTACCA
325 TCCCTCGAAAAAGATAAGCATCGATTCTTG-G-TAGTCTCCACTC-TTTTCAAGATTGGG-ATCA
* ** * * * * * *
3039454 AGAACACATTCTTTTCTTTAGGATACATGACATTGATGTTTTGCTATCACAATAAAGGATTTTCT
386 AGAACAAATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAAAATAAAGGCTTTTCT
* *
3039519 TTCATCCATTTTTGA-CAGAATC
451 TTCAACCGTTTTTGATC-GAATC
* * * * * * * * *
3039541 AAAGTTTGTCTCTCAAATAAGATAAACGTGAATAGTCACATTAATCCCCATGCTTTTCAAGAATG
1 AAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTA
* * * *
3039606 GGCACCATAAACATAGTCTTCTCATAAGGAGACACGATATTAACGCTTTGGTTTTGCAAGAAAGG
66 GGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGG
* * * * *
3039671 CTTTCTTCGCCCAAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGATAAACATGGATTCTA
131 CTTTCTTC-CCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATAACACAAACATAGATTCTA
* *
3039736 GTAACGATCTTC
195 GTTATGATCTTC
3039748 GCTCTGTCGC
Statistics
Matches: 1339, Mismatches: 249, Indels: 84
0.80 0.15 0.05
Matches are distributed among these distances:
468 4 0.00
471 365 0.27
472 13 0.01
473 4 0.00
474 284 0.21
475 33 0.02
476 433 0.32
477 5 0.00
478 189 0.14
479 9 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (472 bp):
AAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGATTA
GGCACCATAAACATAGTCTTCTCATAAGGATATACGATATTGACGCTTTGGTTTCGCAAGAAAGG
CTTTCTTCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATAACACAAACATAGATTCTAG
TTATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCCCCTCATTAGGATAAATGAT
ATTGATGATTTTCTCTAGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAACTTCAT
CCCTCGAAAAAGATAAGCATCGATTCTTGGTAGTCTCCACTCTTTTCAAGATTGGGATCAAGAAC
AAATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAAAATAAAGGCTTTTCTTTCAA
CCGTTTTTGATCGAATC
Found at i:3041090 original size:16 final size:15
Alignment explanation
Indices: 3041064--3041104 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 15
3041054 GATAAAAAGA
3041064 ATTTTTTATTATTTT
1 ATTTTTTATTATTTT
3041079 ATTTTGTTATTATTTTTT
1 ATTTT-TTATTA--TTTT
3041097 ATTTTTTA
1 ATTTTTTA
3041105 ATTCTAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 5 0.22
16 6 0.26
17 3 0.13
18 9 0.39
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (15 bp):
ATTTTTTATTATTTT
Found at i:3042404 original size:9 final size:9
Alignment explanation
Indices: 3042390--3042438 Score: 55
Period size: 9 Copynumber: 5.2 Consensus size: 9
3042380 CTCTCTTTTA
3042390 TTATTATTT
1 TTATTATTT
3042399 TTATTATTT
1 TTATTATTT
3042408 TTATTAGTCATT
1 TTATTA-T--TT
*
3042420 TT-TTATTA
1 TTATTATTT
3042428 TTATTATTT
1 TTATTATTT
3042437 TT
1 TT
3042439 TATTTTCTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
8 3 0.09
9 22 0.65
10 2 0.06
11 3 0.09
12 4 0.12
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (9 bp):
TTATTATTT
Found at i:3042430 original size:17 final size:16
Alignment explanation
Indices: 3042385--3042442 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
3042375 CTCCTCTCTC
* *
3042385 TTTTATTATTATTTTTA
1 TTTT-TTATTATTATCA
*
3042402 TTATTT-TTATTAGTCA
1 TTTTTTATTATTA-TCA
*
3042418 TTTTTTATTATTATTA
1 TTTTTTATTATTATCA
3042434 TTTTTTATT
1 TTTTTTATT
3042443 TTCTGATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
15 5 0.15
16 20 0.59
17 9 0.26
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (16 bp):
TTTTTTATTATTATCA
Found at i:3042816 original size:15 final size:17
Alignment explanation
Indices: 3042785--3042816 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
3042775 CAAGAAGAAT
3042785 AAAACAAGAATGCAGGA
1 AAAACAAGAATGCAGGA
3042802 AAAACAA-AA-GCAGGA
1 AAAACAAGAATGCAGGA
3042817 CCACACAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 2 0.13
17 7 0.47
ACGTcount: A:0.62, C:0.12, G:0.22, T:0.03
Consensus pattern (17 bp):
AAAACAAGAATGCAGGA
Found at i:3043018 original size:42 final size:43
Alignment explanation
Indices: 3042931--3043093 Score: 181
Period size: 43 Copynumber: 3.8 Consensus size: 43
3042921 TTAGGGAAGG
* * *
3042931 AAAGT-TCCATGGCCAAAGCCGACAGGCAGACT-AAGGATAAGA
1 AAAGTCTCCAGGGTCAAAGCCGACAAGCAGACTGAAGGAT-AGA
* * * *
3042973 AAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGATGG-TTGA
1 AAAGTCTCCAGGGTCAAAGCCGACAAGCAGACTGAAGGATAGA
* * *
3043015 AAAGTCTCCAGGGTCAAAGCCG-CTAAGCAGACTTAGGGAAAGA
1 AAAGTCTCCAGGGTCAAAGCCGAC-AAGCAGACTGAAGGATAGA
*
3043058 AAAGTCTCCAGGGTCAAAACCGACAAGCAGACTGAA
1 AAAGTCTCCAGGGTCAAAGCCGACAAGCAGACTGAA
3043094 AGGAAAGTTT
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
41 1 0.01
42 39 0.38
43 59 0.57
44 4 0.04
ACGTcount: A:0.38, C:0.22, G:0.26, T:0.13
Consensus pattern (43 bp):
AAAGTCTCCAGGGTCAAAGCCGACAAGCAGACTGAAGGATAGA
Found at i:3043061 original size:85 final size:84
Alignment explanation
Indices: 3042931--3043092 Score: 220
Period size: 85 Copynumber: 1.9 Consensus size: 84
3042921 TTAGGGAAGG
* * *
3042931 AAAGTTCCATGGCCAAAGCCGACAGGCAGACTAAGGATAAGAAAAGTCTCCAAGGTCAAAGCCGA
1 AAAGTTCCAGGGCCAAAGCCGACAAGCAGACTAAGGATAAGAAAAGTCTCCAAGGTCAAAACCGA
*
3042996 CAGGCAGACTGATGGTTGA
66 CAAGCAGACTGATGGTTGA
* * *
3043015 AAAGTCTCCAGGGTCAAAGCCG-CTAAGCAGACTTAGGGA-AAGAAAAGTCTCCAGGGTCAAAAC
1 AAAGT-TCCAGGGCCAAAGCCGAC-AAGCAGAC-TAAGGATAAGAAAAGTCTCCAAGGTCAAAAC
3043078 CGACAAGCAGACTGA
63 CGACAAGCAGACTGA
3043093 AAGGAAAGTT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
84 6 0.09
85 57 0.84
86 5 0.07
ACGTcount: A:0.38, C:0.22, G:0.27, T:0.14
Consensus pattern (84 bp):
AAAGTTCCAGGGCCAAAGCCGACAAGCAGACTAAGGATAAGAAAAGTCTCCAAGGTCAAAACCGA
CAAGCAGACTGATGGTTGA
Found at i:3043222 original size:43 final size:43
Alignment explanation
Indices: 3043108--3043241 Score: 139
Period size: 42 Copynumber: 3.2 Consensus size: 43
3043098 AAGTTTCCGA
* * * * *
3043108 AGACT-AAGGGAAAGAAAGTCTCCAGGGACGAAGTCGACAGGC
1 AGACTGAAGGGAAGGAAAGTCTCCAGGGTCAAAGCCAACAGGC
* * *
3043150 AGACTG-A-GGATTGAAAAGTCTCCAAGGTCAAAGCCAACAGGC
1 AGACTGAAGGGA-AGGAAAGTCTCCAGGGTCAAAGCCAACAGGC
* * *
3043192 AGACTGAAGGGAAGGAAAGTCTCCAGGGTCAAGGCCAATAAGC
1 AGACTGAAGGGAAGGAAAGTCTCCAGGGTCAAAGCCAACAGGC
3043235 AGACTGA
1 AGACTGA
3043242 GAGAAAGAAA
Statistics
Matches: 74, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
41 3 0.04
42 35 0.47
43 33 0.45
44 3 0.04
ACGTcount: A:0.38, C:0.19, G:0.31, T:0.12
Consensus pattern (43 bp):
AGACTGAAGGGAAGGAAAGTCTCCAGGGTCAAAGCCAACAGGC
Found at i:3043254 original size:43 final size:43
Alignment explanation
Indices: 3043108--3043255 Score: 122
Period size: 43 Copynumber: 3.5 Consensus size: 43
3043098 AAGTTTCCGA
* * * * * * * *
3043108 AGACTAAGGGAAAG-AAAGTCTCCAGGGACGAAGTCGACAGGC
1 AGACTGAGAGAAAGAAAAGTCTCCAAGGTCAAAGCCAACAAGC
** *
3043150 AGACTGAG-GATTGAAAAGTCTCCAAGGTCAAAGCCAACAGGC
1 AGACTGAGAGAAAGAAAAGTCTCCAAGGTCAAAGCCAACAAGC
* * * * *
3043192 AGACTGA-AGGGAAGGAAAGTCTCCAGGGTCAAGGCCAATAAGC
1 AGACTGAGA-GAAAGAAAAGTCTCCAAGGTCAAAGCCAACAAGC
3043235 AGACTGAGAGAAAGAAAAGTC
1 AGACTGAGAGAAAGAAAAGTC
3043256 AGACTGAGGG
Statistics
Matches: 84, Mismatches: 18, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
41 3 0.04
42 37 0.44
43 43 0.51
44 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.30, T:0.11
Consensus pattern (43 bp):
AGACTGAGAGAAAGAAAAGTCTCCAAGGTCAAAGCCAACAAGC
Found at i:3043259 original size:106 final size:105
Alignment explanation
Indices: 3043149--3043360 Score: 239
Period size: 106 Copynumber: 2.0 Consensus size: 105
3043139 AGTCGACAGG
** * * * *
3043149 CAGACTGA-GGATTGAAAAGTCTCCAAGG-TCAAAGCCAACAGGCAGACTGAAGGGAAGGAAAGT
1 CAGACTGAGGGAAAGAAAAGACTCCAAGGAT-AAAGCCAACAAGCAGACT-AAGGAAAGAAAAGT
* * *
3043212 CTCCAGGGTCAAGGCCAATAAGCAGACTGAGAGAAAGAAAAGT
64 CTCCAGGGTCAAAGCCAACAAGCAGACTAAG-GAAAGAAAAGT
* * * *
3043255 CAGACTGAGGGAAAGAAAAGACTCTAGGGATGAAGCCGACAAGCAGACTAAGGAAAGAAAAGTCT
1 CAGACTGAGGGAAAGAAAAGACTCCAAGGATAAAGCCAACAAGCAGACTAAGGAAAGAAAAGTCT
* * *
3043320 CCAGGGTCAAAGCCGACAGGCAGACTAAGGAAATAAAAGT
66 CCAGGGTCAAAGCCAACAAGCAGACTAAGGAAAGAAAAGT
3043360 C
1 C
3043361 TCCAGGGTCA
Statistics
Matches: 88, Mismatches: 16, Indels: 5
0.81 0.15 0.05
Matches are distributed among these distances:
105 11 0.12
106 46 0.52
107 30 0.34
108 1 0.01
ACGTcount: A:0.42, C:0.18, G:0.29, T:0.11
Consensus pattern (105 bp):
CAGACTGAGGGAAAGAAAAGACTCCAAGGATAAAGCCAACAAGCAGACTAAGGAAAGAAAAGTCT
CCAGGGTCAAAGCCAACAAGCAGACTAAGGAAAGAAAAGT
Found at i:3043260 original size:21 final size:21
Alignment explanation
Indices: 3043234--3043274 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
3043224 GGCCAATAAG
3043234 CAGACTGAGAGAAAGAAAAGT
1 CAGACTGAGAGAAAGAAAAGT
*
3043255 CAGACTGAGGGAAAGAAAAG
1 CAGACTGAGAGAAAGAAAAG
3043275 ACTCTAGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.32, T:0.07
Consensus pattern (21 bp):
CAGACTGAGAGAAAGAAAAGT
Found at i:3043284 original size:149 final size:147
Alignment explanation
Indices: 3042958--3043375 Score: 448
Period size: 149 Copynumber: 2.8 Consensus size: 147
3042948 GCCGACAGGC
* * * *
3042958 AGACTAA-GGATAAGAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGATGG-TTGAAAAGTC
1 AGACTAAGGGA-AAG-AAAGACTCCAGGGACGAAGCCGACAGGCAGACTGA-GGATTGAAAAGTC
* * * *
3043021 TCCAGGGTCAAAGCCGCTAAGCAGACTTAGGGAAAGAAAAGTCTCCAGGGTCAAAACCGACAAGC
63 TCCAGGGTCAAAGCCAC-AGGCAGACTAAGGG-AAGAAAAGTCTCCAGGGTCAAAACCAACAAGC
****
3043086 AGACTGAAAGGAAAGTTTCCGA
126 AGACTGAAAGGAAAGTAAAAGA
* *
3043108 AGACTAAGGGAAAGAAAGTCTCCAGGGACGAAGTCGACAGGCAGACTGAGGATTGAAAAGTCTCC
1 AGACTAAGGGAAAGAAAGACTCCAGGGACGAAGCCGACAGGCAGACTGAGGATTGAAAAGTCTCC
* * ** *
3043173 AAGGTCAAAGCCAACAGGCAGACTGAAGGGAAGGAAAGTCTCCAGGGTCAAGGCCAATAAGCAGA
66 AGGGTCAAAGCC-ACAGGCAGACT-AAGGGAAGAAAAGTCTCCAGGGTCAAAACCAACAAGCAGA
* *
3043238 CTGAGA-GAAAG-AAAAGTC
129 CTGAAAGGAAAGTAAAAG-A
* * * * * **
3043256 AGACTGAGGGAAAGAAAAGACTCTAGGGATGAAGCCGACAAGCAGACTAAGGAAAGAAAAGTCTC
1 AGACTAAGGGAAAG-AAAGACTCCAGGGACGAAGCCGACAGGCAGACTGAGGATTGAAAAGTCTC
* *
3043321 CAGGGTCAAAGCCGACAGGCAGACTAAGGAAATAAAAGTCTCCAGGGTCAAAACC
65 CAGGGTCAAAGCC-ACAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAACC
3043376 GACAGGCAAA
Statistics
Matches: 227, Mismatches: 35, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
147 1 0.00
148 45 0.20
149 163 0.72
150 15 0.07
151 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.28, T:0.12
Consensus pattern (147 bp):
AGACTAAGGGAAAGAAAGACTCCAGGGACGAAGCCGACAGGCAGACTGAGGATTGAAAAGTCTCC
AGGGTCAAAGCCACAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAACCAACAAGCAGACT
GAAAGGAAAGTAAAAGA
Found at i:3043311 original size:42 final size:42
Alignment explanation
Indices: 3043255--3043945 Score: 685
Period size: 42 Copynumber: 16.2 Consensus size: 42
3043245 AAAGAAAAGT
* * * * *
3043255 CAGACTGAGGGAAAGAAAAGACTCTAGGGAT-GAAGCCGACAAG
1 CAGACT-AAGGAAAGAAAAGTCTCCAGGG-TCAAAGCCGACAGG
3043298 CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
1 CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
* *
3043340 CAGACTAAGGAAATAAAAGTCTCCAGGGTCAAAACCGACAGG
1 CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
* * * * *
3043382 CAAACTAAGGGATGAAAAGTCTCTAAGGTCAAAGCCGACAGG
1 CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
* * **
3043424 CAGACTAA--AAGGAAAAGTCTCTAGGGTCAAAATCGACAGG
1 CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
* *
3043464 CAGACTAAAGAAAGAAAAGTCTCCAAGGTCAAAGCCGACAGG
1 CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
***
3043506 CAGACTAAGGTTTGAAAAGTCTCCAGGGTCAAAGCCGACAGG
1 CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
* * *
3043548 CAGACTAAGGAAAGAAAAGTCTCCAAGGTCAAAACTGACAGG
1 CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
*
3043590 CAGACTAAAGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
1 CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
* * *** * * *
3043632 CAAACTGAGGGTTGAAAAGTCTCCAAGGAT-GAAGCCGATAGG
1 CAGACTAAGGAAAGAAAAGTCTCC-AGGGTCAAAGCCGACAGG
*
3043674 CAGACTAAGGGAAGGAAAGAAAAGTCTCCAAGGTCAAAGCCGACAGG
1 CAGACT-----AAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
* *** * * *
3043721 CAGACTGAGGGTTGAAAAGTCTCCAGGGACGAAGCCGACAAG
1 CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
* * * * *
3043763 CAGACTAAGGGAAGGAAAGTCTCTAAGGAT-GAAGCCGACAGG
1 CAGACTAAGGAAAGAAAAGTCTC-CAGGGTCAAAGCCGACAGG
* ** *
3043805 CCGACTAAGGGAAGGAAAGAAAAGTCTCCAGGGTCAAAATCGACAAG
1 CAGACT-----AAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
* *
3043852 CAGACTAAAGAAAGAAAAGTCTCTAGGGTCAAAGCCGACAGG
1 CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
* * * *
3043894 TAGACTGAAGG-AAGGAAAGTCTTTC-GGGTCAAAGACGACAGG
1 CAGACT-AAGGAAAGAAAAGTC-TCCAGGGTCAAAGCCGACAGG
3043936 CAGACTAAGG
1 CAGACTAAGG
3043946 GGAAAACAGA
Statistics
Matches: 533, Mismatches: 96, Indels: 40
0.80 0.14 0.06
Matches are distributed among these distances:
40 35 0.07
41 5 0.01
42 411 0.77
43 17 0.03
46 7 0.01
47 58 0.11
ACGTcount: A:0.40, C:0.19, G:0.28, T:0.12
Consensus pattern (42 bp):
CAGACTAAGGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
Found at i:3043899 original size:131 final size:129
Alignment explanation
Indices: 3043255--3043943 Score: 751
Period size: 131 Copynumber: 5.4 Consensus size: 129
3043245 AAAGAAAAGT
* * * * * *
3043255 CAGACTGAGGGAAAGAAAAGACTCTAGGGAT-GAAGCCGACAAGCAGACT--AAGGAAAGAAAAG
1 CAGACTAAGGG-ATGAAAAGTCTCTAAGGATCAAAGCCGACAGGCAGACTAAAAGGAAAGAAAAG
* * * *
3043317 TCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGAAATAAAAGTCTCCAGGGTCAAAACCGACAGG
65 TCTCCAGGGTCAAAACCGACAGGCAGACTAAAGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
*
3043382 CAAACTAAGGGATGAAAAGTCTCTAAGG-TCAAAGCCGACAGGCAGACTAAAA-G---GAAAAGT
1 CAGACTAAGGGATGAAAAGTCTCTAAGGATCAAAGCCGACAGGCAGACTAAAAGGAAAGAAAAGT
* * *
3043442 CTCTAGGGTCAAAATCGACAGGCAGACTAAAGAAAGAAAAGTCTCCAAGGTCAAAGCCGACAGG
66 CTCCAGGGTCAAAACCGACAGGCAGACTAAAGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
** * *
3043506 CAGACTAAGGTTTGAAAAGTCTC-CAGGGTCAAAGCCGACAGGCAGACT--AAGGAAAGAAAAGT
1 CAGACTAAGGGATGAAAAGTCTCTAAGGATCAAAGCCGACAGGCAGACTAAAAGGAAAGAAAAGT
* *
3043568 CTCCAAGGTCAAAACTGACAGGCAGACTAAAGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
66 CTCCAGGGTCAAAACCGACAGGCAGACTAAAGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
* * * * * *
3043632 CAAACTGAGGGTTGAAAAGTCTCCAAGGAT-GAAGCCGATAGGCAGACTAAGGGAAGGAAAGAAA
1 CAGACTAAGGGATGAAAAGTCTCTAAGGATCAAAGCCGACAGGCAGACTAA---AAGGAAAGAAA
* * * * *** * *
3043696 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTTGAAAAGTCTCCAGGGACGAAGCCGACA
63 AGTCTCCAGGGTCAAAACCGACAGGCAGACTAAAGAAAGAAAAGTCTCCAGGGTCAAAGCCGACA
*
3043761 AG
128 GG
* * * *
3043763 CAGACTAAGGGAAGGAAAGTCTCTAAGGAT-GAAGCCGACAGGCCGACTAAGGGAAGGAAAGAAA
1 CAGACTAAGGGATGAAAAGTCTCTAAGGATCAAAGCCGACAGGCAGACTAA---AAGGAAAGAAA
* * *
3043827 AGTCTCCAGGGTCAAAATCGACAAGCAGACTAAAGAAAGAAAAGTCTCTAGGGTCAAAGCCGACA
63 AGTCTCCAGGGTCAAAACCGACAGGCAGACTAAAGAAAGAAAAGTCTCCAGGGTCAAAGCCGACA
3043892 GG
128 GG
* * * ** * *
3043894 TAGACTGAA-GGAAGGAAAGTCT-TTCGGGTCAAAGACGACAGGCAGACTAA
1 CAGACT-AAGGGATGAAAAGTCTCTAAGGATCAAAGCCGACAGGCAGACTAA
3043944 GGGGAAAACA
Statistics
Matches: 478, Mismatches: 68, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
122 2 0.00
123 4 0.01
124 104 0.22
125 1 0.00
126 132 0.28
127 14 0.03
128 2 0.00
130 4 0.01
131 213 0.45
132 2 0.00
ACGTcount: A:0.40, C:0.19, G:0.28, T:0.12
Consensus pattern (129 bp):
CAGACTAAGGGATGAAAAGTCTCTAAGGATCAAAGCCGACAGGCAGACTAAAAGGAAAGAAAAGT
CTCCAGGGTCAAAACCGACAGGCAGACTAAAGAAAGAAAAGTCTCCAGGGTCAAAGCCGACAGG
Found at i:3054895 original size:121 final size:120
Alignment explanation
Indices: 3054676--3054896 Score: 329
Period size: 121 Copynumber: 1.8 Consensus size: 120
3054666 ATCCCCAATC
** * *
3054676 TTTTTAAGATTAGGCACCATAAACATTGTCTTGTCATAAGGATACATGATATTGACACTTTGGCT
1 TTTTTAAGATTAGGCACCATAAACATACTCTTCTCATAAGGATACAGGATATTGACACTTTGGCT
*
3054741 TCATAAGAAAGGCTTTCTTCCCCCTAATTTTTGAATACTCATACTATTCCCTATT
66 TCACAAGAAAGGCTTTCTTCCCCCTAATTTTTGAATACTCATACTATTCCCTATT
**
3054796 TTTTTCAAGATTAGGCACCATAAACATACTCTTCTCATAAGGATGTAGGATATTGA-AGCTTTGG
1 TTTTT-AAGATTAGGCACCATAAACATACTCTTCTCATAAGGATACAGGATATTGACA-CTTTGG
*
3054860 TTTCACAAGAAAGGCTTTC-TCTCCCCTAATTTTTGAA
64 CTTCACAAGAAAGGCTTTCTTC-CCCCTAATTTTTGAA
3054897 ATTTCTAAGA
Statistics
Matches: 90, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
120 8 0.09
121 82 0.91
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.37
Consensus pattern (120 bp):
TTTTTAAGATTAGGCACCATAAACATACTCTTCTCATAAGGATACAGGATATTGACACTTTGGCT
TCACAAGAAAGGCTTTCTTCCCCCTAATTTTTGAATACTCATACTATTCCCTATT
Found at i:3055784 original size:475 final size:475
Alignment explanation
Indices: 3054772--3058249 Score: 4230
Period size: 475 Copynumber: 7.3 Consensus size: 475
3054762 CCCTAATTTT
* * * * *
3054772 TGAATACTCATACTATTCCCTATTTTTTTCAAGATTAGGCACCATAAACATACTCTTCTCATAAG
1 TGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
** * * *
3054837 GATGTAGGATATTGAAGCTTTGGTTTCACAAGAAAGGCTTTC-TCTCCCCTAATTTTTGAAATTT
66 GATACAGGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCCCTAATTTTTGAAATGT
* * * * * * *
3054901 CTAAGATCGTGCCTTAAATGAGACACACATGGATTCTAGTAATGAACTTTAATCATTTTGTGTTT
130 CTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATT
* * * *
3054966 AAGCACTGTAAACACATTCCCCTTATTAGGATAAATGATATTGATGATTTTCTCTAACATGGAAA
195 AGGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAA
* * * * * * *
3055031 TCTTTTCCTTGCCCTATTTTCCTTAAAGTAAAAGTTCGTTCCTTGAAAATGATAAGCATCGATTC
260 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTC
* * * * *
3055096 GCATGACAGTCTCCATTCTTTTCCAGATTGGGAACCAAGAACACATTCCCTACATTAGGATACGT
325 TCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAT
* * * * * * * * * * * * * *
3055161 AACATTGATGCTTTGGGGTCGTAGTAAAGGCTTTTCTCTCAATCGTATTGGAGAAAATTAAAGTT
390 GACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCATTTTTGATAGACTCAAAGTT
*
3055226 TGTTTCTCAAATAAGACAAATA
455 TGTCTCTCAAATAAGAC-AATA
* * *
3055248 TGAATAGTCATACAAATCCACAATCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
1 TGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * * *
3055313 CATACAAGATATTGATGCTGTGGTTTCACAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAATGCC
66 GATACAGGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAATGTC
* * **
3055378 TAAGTTCGTGCCTCAAATAAGACACACATGGATTTTAGTAATGATCTTCATTTGTGTT-GTGATT
131 TAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAATGATCTTCATTCAT-TTCGTGATT
* * * * * *
3055442 AGGCACTGTAAATACATTCCCATCATTAGGAT-AATAGTTATTAATGATTTTCTCCAGCATTAAA
195 AGGCACTGTAAACACATTCCCCTCATTAGGATAAAT-GATATTGATGATTTTCTCTAGCATGAAA
* * * *
3055506 ATC-TTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTTATCTCTTGAAAAAGACAAGCATCAATT
259 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATT
* * * * * *
3055570 CTCGTGACAATCTCCACTCTTTTGAAGTTTGGGAACCAAAAACACATTCCCTTCGTTAGGATACA
324 CTCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACA
* * **
3055635 TGACATTGATGCTTTGGTATCGCAATAAAAGCTTTTCTTTCCATCATTTTTAATAGACTCAAAAA
389 TGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCATTTTTGATAGACTCAAAGT
* * *
3055700 TTGACACTAAAATAAGACAATCA
454 TTGTCTCTCAAATAAGACAAT-A
* * **
3055723 CGAATAGTTATACTAATCCTTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
1 TGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * * * *
3055788 GATATAGCACATTGATGCTTTGGTTTC-AAAGGAAAGGCTTTCTTCCCCCCAATTTTTGTAATGT
66 GATACAGGATATTGATGCTTTGGTTTCGCAA-GAAAGGCTTTCTTCCCCCTAATTTTTGAAATGT
* *
3055852 CTAAGTTCGTGCCTCAAATGAGACACACAAGGATTCTAGAAATGATCTTCATTCATTTCGTGATT
130 CTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATT
** * *
3055917 AGGCACTGTAAACACATTCCTTTCATTAGGATAAATGATATTGATGATTTTCCCTAGCACGAAAA
195 AGGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAA
* * *
3055982 TCTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCAT-CCTTGAAAAAGACAAACGTCGATTC
260 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTC
* * * *
3056046 TCATGATAGTCTCCACTCTTTTCAAGTTTGGGAACCAAGAATATATTCCCTTCATTAGGATACAT
325 TCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAT
* * * * *
3056111 AACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCGTTCCATCATTTTTGATAGACTCAACGAT
390 GACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCATTTTTGATAGACTCAAAGTT
* * *
3056176 TGACACTAAAATAAGACAA-A
455 TGTCTCTCAAATAAGACAATA
* * * * *
3056196 CGTGAATAGTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCAAAAACATAGTCTTCTAATA
1 --TGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATA
* * * * * * * *
3056261 AGGATATATGATATTGATGTTTTGGTTTTGCAAGAAAAGCTTTCTTCCCCCTGAGTTTTGAAAAG
64 AGGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAATG
* * * * * *
3056326 TCTAAGTTTGTGCCTCAAATGAGATAAACGTGGATTCTAGAAATGATCTTCATTCATTTCATGAT
129 TCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAATGATCTTCATTCATTTCGTGAT
* * * *
3056391 TAGCCACTGTAAACACATTCCCCTCATTAGGGTAAATGATATTGACGATTTTCTCTCA-CATGGA
194 TAGGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCT-AGCATGAA
* * *
3056455 AATCTTTTCTTTGCCCTATTTTCCATAAAGTCGAAGTTCATCCCTTGAAAAAGACAAGCATCGAT
258 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGAT
* * * * * *
3056520 TCTCATGACAGTCTCCATTCATTTCAAGATTGGGAACCAAGAACACATTCCATGCTTTGGGATAC
323 TCTCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATAC
* * * * * * * * * *
3056585 ATAACAATGATGCTTTGGTGTCGTAGTAAAGGCTTTTCTTTCAACCGTATTTGATAAAAC-CAAA
388 ATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCATTTTTGAT-AGACTCAAA
*
3056649 GTTTGTCTCTCGAATAAGACAAATA
452 GTTTGTCTCTCAAATAAGAC-AATA
* * * * *
3056674 TGAATAGTTATACTAATCCCCTTTCTTTTCAAGATTAGGCACCAAAAACAAAGTCTTCTCATACG
1 TGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
* *
3056739 CATACAGGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTCGAAATGTC
66 GATACAGGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAATGTC
* * *
3056804 TAAGTTCGTGCCGCAAAT-AGGATACACATGGATTCTAGTAATGATCTTCACTCATTTCGTGATT
131 TAAGTTCGTGCCTCAAATGA-GACACACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATT
* * * * *
3056868 AGGCATTGTAAACACATTCCGCTCTTTAGGATAAATCATATTGATGATTTTCTCTAGCACGAAAA
195 AGGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAA
* * **
3056933 ---TTTCTTTGCCCTATTTTCCATAAAATCAAAGTTAATCCCACGAAAAAGACAAGCATCGATTC
260 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTC
* * * *
3056995 TCGTGACAATCTCAACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTTATTAGGATACAT
325 TCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAT
* * *
3057060 GACATTGATGCTTTGGTGTCACAATAAAAGCTTTTCTTT-CATCCGTTTTTGATAGAATCAAAGT
390 GACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCAT-CATTTTTGATAGACTCAAAGT
*
3057124 TTGTCTCTCAAATATGACATATA
454 TTGTCTCTCAAATAAGACA-ATA
* ** *
3057147 TGAATAGTCATACTAATCCCCATTTTTTTCAAGATTAGGTGCCATAAACATAGTCTTCTCATAAT
1 TGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * *
3057212 GATACAGGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTCTTCCCCCCAAGTTTTGAAAAGTC
66 GATACAGGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAATGTC
* * *
3057277 TAAGTTCGTGCCTCAATTAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTCAG-GATT
131 TAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAATGATCTTCATTCATTTC-GTGATT
* * * *
3057341 AAGCACTGTAAACACATTCCCCTCGTTAGGATAAATGATATTGATGATTTTCTTTAACATGAAAA
195 AGGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAA
* * *
3057406 TCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTTCATCTCTTGAAAAAGATAAGCATCGATT
260 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG-TTCATCCCTTGAAAAAGACAAGCATCGATT
* ** * * *
3057471 TTTGTGACAGTCTCCACTGTTTTCAAGATTGGGAACC-AGCAACACCTTCCCTTCATCAGGATAC
324 CTCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAG-AACACATTCCCTTCATTAGGATAC
* ** * * * *
3057535 ATGACATTCATGCTTTGGTGTCATAATAAAGGCATTTCTTT-CATC-TGTGTTTTATAGAATCAA
388 ATGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCAT-T-TTTGATAGACTCAA
*
3057598 AGTTTGTCTCTCAAATAAGACATATG
451 AGTTTGTCTCTCAAATAAGACA-ATA
* * * *
3057624 TGAATAGTCATACTAATCCTCATT-TTTTCAAGATAAGGCCCCATAAACATAGTCTTCTTATAAG
1 TGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
*
3057688 GATACAGGATATTGATGCTTTGGTTTCGC-AGAAAAGGCTTTCTTTCCCCC-AATTTTGGAAATG
66 GATACAGGATATTGATGCTTTGGTTTCGCAAG-AAAGGCTTTC-TTCCCCCTAATTTTTGAAATG
* * * ** * *
3057751 TCTAAGTTTGTGCCTTAATTGAGACGTACATGGATTCTAGTAACGAACTTCATTCATTTCGTGAT
129 TCTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAATGATCTTCATTCATTTCGTGAT
* * * * *
3057816 TAGGCATTGTGAACACATTCCCCTCATTAGGATAAATGGTATTGATGATTTTCTTTAGCATGGAA
194 TAGGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAA
* *
3057881 ATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAGAAGACAAGCATCGATT
259 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATT
* * *
3057946 CTCCTGATAGTCTCCACTCTTTTCAA-ATTGGGAACCAAGAACACATTTCCTTCATTAGGATACA
324 CTCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACA
* * * *
3058010 TGACATTAATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCATTTTAGATAGACTCAAAGA
389 TGACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCATTTTTGATAGACTCAAAGT
* * * *
3058075 TTGACACTAAAATAAGACAAACA
454 TTGTCTCTCAAATAAGAC-AATA
* * * * * * *
3058098 TGAATCGTCATGCTAATCCCCATTCTTTAT-AGGATTAGGTACCAAAAACATATTCTTCTAATAA
1 TGAATAGTCATACTAATCCCCATTCTTT-TCAAGATTAGGCACCATAAACATAGTCTTCTCATAA
* * * * * *
3058162 GGATATATGATATTGATGCTTTGGTTTCGTAAAAAAGGCTTTCTTCCCCCCAAGTTTTGAAATGT
65 GGATACAGGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAATGT
* *
3058227 CTAAGTTCGTACCTCAATTGAGA
130 CTAAGTTCGTGCCTCAAATGAGA
3058250 GAAACATTGA
Statistics
Matches: 2579, Mismatches: 382, Indels: 83
0.85 0.13 0.03
Matches are distributed among these distances:
472 4 0.00
473 407 0.16
474 132 0.05
475 961 0.37
476 880 0.34
477 194 0.08
478 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (475 bp):
TGAATAGTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
GATACAGGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTTGAAATGTC
TAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTA
GGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCATGAAAAT
CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCT
CATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATG
ACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTTCCATCATTTTTGATAGACTCAAAGTTT
GTCTCTCAAATAAGACAATA
Found at i:3056667 original size:951 final size:948
Alignment explanation
Indices: 3054772--3058243 Score: 4298
Period size: 951 Copynumber: 3.7 Consensus size: 948
3054762 CCCTAATTTT
* * * * *
3054772 TGAATACTCATACTATTCCCTATTTTTTTCAAGATTAGGCACCATAAACATACTCTTCTCATAAG
1 TGAATAGTTATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
** * * *
3054837 GATGTAGGATATTGAAGCTTTGGTTTCACAAGAAAGGCTTTC-TCTCCCCTAATTTTTGAAATTT
66 GATACAGGATATTGATGCTTTGGTTTCA-AAGAAAGGCTTTCTTC-CCCCCAATTTTTGAAATGT
* * * * * *
3054901 CTAAGATCGTGCCTTAAATGAGACACACATGGATTCTAGTAATGAACTTTAATCATTTTGTGTTT
129 CTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAATGAACTTCATTCATTTCGTGATT
* * * * *
3054966 AAGCACTGTAAACACATTCCCCTTATTAGGATAAATGATATTGATGATTTTCTCTAACATGGAAA
194 AGGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCACGAAAA
* * * * * * *
3055031 TCTTTTCCTTGCCCTATTTTCCTTAAAGTAAAAGTTCGTTCCTTGAAAATGATAAGCATCGATTC
259 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTC
* * * * *
3055096 GCATGACAGTCTCCATTCTTTTCCAGATTGGGAACCAAGAACACATTCCCTACATTAGGATACGT
324 TCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAT
* * * * * * * * * * * *
3055161 AACATTGATGCTTTGGGGTCGTAGTAAAGGCTTTTCTCTCAATCGTATTGGAGAAAATTAAAGTT
389 AACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCT-TCCATCATTTTTGATAGAATCAAAGAT
*** * * * * * *
3055226 TGTTTCTCAAATAAGACAAATATGAATAGTCATACAAATCCACAATCTTTTCAAGATTAGGCACC
453 TGACACTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAAGATTAGGCACC
* * * * * * *
3055291 ATAAACATAGTCTTCTCATAAGCATACAAGATATTGATGCTGTGGTTTCACAAGAAAGGCTTTCT
518 AAAAACATAGTCTTCTAATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCT
* * * * * *
3055356 TCCCCCTAATTTTTGAAATGCCTAAGTTCGTGCCTCAAATAAGACACACATGGATTTTAGTAATG
583 TCCCCCCAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATG
** * * * *
3055421 ATCTTCATTTGTGTT-GTGATTAGGCACTGTAAATACATTCCCATCATTAGGAT-AATAGTTATT
648 ATCTTCATTCAT-TTCATGATTA-GCACTGTAAACACATTCCCCTCATTAGGATAAAT-GATATT
* * * *
3055484 AATGATTTTCTC-CAGCATTAAAATC-TTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTTATCT
710 GATGATTTTCTCTCA-CATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCT
* * * * *
3055547 CTTGAAAAAGACAAGCATCAATTCTCGTGACAATCTCCACTCTTTTGAAGTTTGGGAACCAAAAA
774 CTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAA
* * * * *
3055612 CACATTCCCTTCGTTAGGATACATGACATTGATGCTTTGGTATCGCAATAAAAGCTTTTCTTTCC
839 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAATAAAGGCTTTTCTTTCA
* * * * ** * * *
3055677 ATCATTTTTAAT-AGACTCAAAAATTGACACTAAAATAAGACAATCA
904 ACCGTATTTAATAAAAC-CAAAGTTTGTCTCTCAAATAAGACAAT-A
* *
3055723 CGAATAGTTATACTAATCCTTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
1 TGAATAGTTATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * *
3055788 GATATAGCACATTGATGCTTTGGTTTCAAAGGAAAGGCTTTCTTCCCCCCAATTTTTGTAATGTC
66 GATACAGGATATTGATGCTTTGGTTTCAAA-GAAAGGCTTTCTTCCCCCCAATTTTTGAAATGTC
* * *
3055853 TAAGTTCGTGCCTCAAATGAGACACACAAGGATTCTAGAAATGATCTTCATTCATTTCGTGATTA
130 TAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAATGAACTTCATTCATTTCGTGATTA
** *
3055918 GGCACTGTAAACACATTCCTTTCATTAGGATAAATGATATTGATGATTTTCCCTAGCACGAAAAT
195 GGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCACGAAAAT
* * *
3055983 CTTTTCTTTGCCCTATTTTCCTCAAAATCAAAGTTCAT-CCTTGAAAAAGACAAACGTCGATTCT
260 CTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCT
* * * *
3056047 CATGATAGTCTCCACTCTTTTCAAGTTTGGGAACCAAGAATATATTCCCTTCATTAGGATACATA
325 CATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATA
* * *
3056112 ACATTGATGCTTTGGTGTTGCAATAAAAGCTTTTCGTTCCATCATTTTTGATAGACTCAACGATT
390 ACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTC-TTCCATCATTTTTGATAGAATCAAAGATT
* * *
3056177 GACACTAAAATAAGACAAACGTGAATAGTCATACTAATCCCTATTCTTTTTAGGATTAGGCACCA
454 GACACTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAAGATTAGGCACCA
* * *
3056242 AAAACATAGTCTTCTAATAAGGATATATGATATTGATGTTTTGGTTTTGCAAGAAAAGCTTTCTT
519 AAAACATAGTCTTCTAATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTT
** * * * * *
3056307 CCCCCTGAGTTTTGAAAAGTCTAAGTTTGTGCCTCAAATGAGATAAACGTGGATTCTAGAAATGA
584 CCCCCCAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGA
* *
3056372 TCTTCATTCATTTCATGATTAGCCACTGTAAACACATTCCCCTCATTAGGGTAAATGATATTGAC
649 TCTTCATTCATTTCATGATTAG-CACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGAT
* * * * *
3056437 GATTTTCTCTCACATGGAAATCTTTTCTTTGCCCTATTTTCCATAAAGTCGAAGTTCATCCCTTG
713 GATTTTCTCTCACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTG
* * *
3056502 AAAAAGACAAGCATCGATTCTCATGACAGTCTCCATTCATTTCAAGATTGGGAACCAAGAACACA
778 AAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACA
* * * * * * *
3056567 TTCCATGCTTTGGGATACATAACAATGATGCTTTGGTGTCGTAGTAAAGGCTTTTCTTTCAACCG
843 TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAATAAAGGCTTTTCTTTCAACCG
* *
3056632 TATTTGATAAAACCAAAGTTTGTCTCTCGAATAAGACAAATA
908 TATTTAATAAAACCAAAGTTTGTCTCTCAAATAAGAC-AATA
* * *
3056674 TGAATAGTTATACTAATCCCCT-TTCTTTTCAAGATTAGGCACCAAAAACAAAGTCTTCTCATAC
1 TGAATAGTTATACTAAT-CCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAA
* * * *
3056738 GCATACAGGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCCCTAATTTTCGAAATGT
65 GGATACAGGATATTGATGCTTTGGTTTC-AAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAATGT
* * * *
3056803 CTAAGTTCGTGCCGCAAAT-AGGATACACATGGATTCTAGTAATGATCTTCACTCATTTCGTGAT
129 CTAAGTTCGTGCCTCAAATGA-GACACACATGGATTCTAGTAATGAACTTCATTCATTTCGTGAT
* * * *
3056867 TAGGCATTGTAAACACATTCCGCTCTTTAGGATAAATCATATTGATGATTTTCTCTAGCACGAAA
193 TAGGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCACGAAA
* * **
3056932 A---TTTCTTTGCCCTATTTTCCATAAAATCAAAGTTAATCCCACGAAAAAGACAAGCATCGATT
258 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATT
* * * *
3056994 CTCGTGACAATCTCAACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTTATTAGGATACA
323 CTCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACA
* * * * *
3057059 TGACATTGATGCTTTGGTGTCACAATAAAAGCTTTTCTTTCATCCGTTTTTGATAGAATCAAAGT
388 TAACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTCCAT-CATTTTTGATAGAATCAAAGA
* * * * * * **
3057124 TTGTCTCTCAAATATGACATATATGAATAGTCATACTAATCCCCATT-TTTTTCAAGATTAGGTG
452 TTGACACTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTT-AAGATTAGGCA
* * * * * *
3057188 CCATAAACATAGTCTTCTCATAATGATACAGGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTT
516 CCAAAAACATAGTCTTCTAATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTT
*
3057253 CTTCCCCCCAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAATTAAGACAAACATGGATTCTAGTAA
581 CTTCCCCCCAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAA
* *
3057318 TGATCTTCATTCATTTCAGGATTAAGCACTGTAAACACATTCCCCTCGTTAGGATAAATGATATT
646 TGATCTTCATTCATTTCATGATT-AGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATT
* * *
3057383 GATGATTTTCTTTAACATGAAAATCTTTTCTTCGCCCTATTTTCCTTAAAATCAAAGTTTCATCT
710 GATGATTTTCTCTCACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAG-TTCATCT
* * * *
3057448 CTTGAAAAAGATAAGCATCGATTTTTGTGACAGTCTCCACTGTTTTCAAGATTGGGAACC-AGCA
774 CTTGAAAAAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAG-A
* * * * *
3057512 ACACCTTCCCTTCATCAGGATACATGACATTCATGCTTTGGTGTCATAATAAAGGCATTTCTTTC
838 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAATAAAGGCTTTTCTTTC
* * * * * * *
3057577 ATCTGTGTTTTATAGAATCAAAGTTTGTCTCTCAAATAAGACATATG
903 AACCGTATTTAATAAAACCAAAGTTTGTCTCTCAAATAAGACA-ATA
* * * *
3057624 TGAATAGTCATACTAAT-CCTCATT-TTTTCAAGATAAGGCCCCATAAACATAGTCTTCTTATAA
1 TGAATAGTTATACTAATCCCT-ATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAA
** * *
3057687 GGATACAGGATATTGATGCTTTGGTTTCGCAGAAAAGGCTTTCTTTCCCCCAATTTTGGAAATGT
65 GGATACAGGATATTGATGCTTTGGTTTCAAAG-AAAGGCTTTCTTCCCCCCAATTTTTGAAATGT
* * * ** *
3057752 CTAAGTTTGTGCCTTAATTGAGACGTACATGGATTCTAGTAACGAACTTCATTCATTTCGTGATT
129 CTAAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAATGAACTTCATTCATTTCGTGATT
* * * * * *
3057817 AGGCATTGTGAACACATTCCCCTCATTAGGATAAATGGTATTGATGATTTTCTTTAGCATGGAAA
194 AGGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCACGAAAA
* *
3057882 TCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAGAAGACAAGCATCGATTC
259 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTC
* * *
3057947 TCCTGATAGTCTCCACTCTTTTCAA-ATTGGGAACCAAGAACACATTTCCTTCATTAGGATACAT
324 TCATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAT
* * * * *
3058011 GACATTAATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCATTTTAGATAGACTCAAAGAT
389 AACATTGATGCTTTGGTGTCGCAATAAAAGCTTTTC-TTCCATCATTTTTGATAGAATCAAAGAT
* * * * *
3058076 TGACACTAAAATAAGACAAACATGAATCGTCATGCTAATCCCCATTCTTTATAGGATTAGGTACC
453 TGACACTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAAGATTAGGCACC
* * *
3058141 AAAAACATATTCTTCTAATAAGGATATATGATATTGATGCTTTGGTTTCGTAA-AAAAGGCTTTC
518 AAAAACATAGTCTTCTAATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAA-GCTTTC
* *
3058205 TTCCCCCCAAGTTTTGAAATGTCTAAGTTCGTACCTCAA
582 TTCCCCCCAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAA
3058244 TTGAGAGAAA
Statistics
Matches: 2162, Mismatches: 329, Indels: 60
0.85 0.13 0.02
Matches are distributed among these distances:
948 48 0.02
949 603 0.28
950 529 0.24
951 883 0.41
952 99 0.05
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (948 bp):
TGAATAGTTATACTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
GATACAGGATATTGATGCTTTGGTTTCAAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAATGTCT
AAGTTCGTGCCTCAAATGAGACACACATGGATTCTAGTAATGAACTTCATTCATTTCGTGATTAG
GCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGATTTTCTCTAGCACGAAAATC
TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTC
ATGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATAA
CATTGATGCTTTGGTGTCGCAATAAAAGCTTTTCTTCCATCATTTTTGATAGAATCAAAGATTGA
CACTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAAGATTAGGCACCAAA
AACATAGTCTTCTAATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTCC
CCCCAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAAATAAGACAAACATGGATTCTAGTAATGATC
TTCATTCATTTCATGATTAGCACTGTAAACACATTCCCCTCATTAGGATAAATGATATTGATGAT
TTTCTCTCACATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCTCTTGAAA
AAGACAAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTC
CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGTAATAAAGGCTTTTCTTTCAACCGTAT
TTAATAAAACCAAAGTTTGTCTCTCAAATAAGACAATA
Found at i:3058442 original size:240 final size:241
Alignment explanation
Indices: 3058012--3058496 Score: 634
Period size: 240 Copynumber: 2.0 Consensus size: 241
3058002 AGGATACATG
** *
3058012 ACATTAATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCATTTTAGATAGACTCAAAGATT
1 ACATTAATGCTTTGGTGTCACAATAAAAGCTTTTCTTTCCATCATTTTAGATAGAATCAAAGATT
* * * *
3058077 GACACTAAAATAAGACAAACATGAATCGTCATGCTAATCCCCATTCTTTATAGGATTAGGTACCA
66 GACACTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTATAAGATTAGGCACCA
* * * * * **
3058142 AAAACATATTCTTCTAATAAGGATATATGATATTGATGCTTTGGTTTCGTAAAAAAGGCTTTCTT
131 AAAACACAGTCTTCTAATAAGGATACAGGATATTGATGCTTTGCTTTCACAAAAAAGGCTTTCTT
* *
3058207 CCCCCCAAGTTTTGAAATGTCTAAGTTCGTACCTCAATTGAGAGAA
196 CCCCCCAAGTTTTGAAAAGTCTAAGTTCGTACCTCAATTGAGACAA
* * ** *
3058253 ACATTGATGCTTTGGTGTCACAATAAAAGCTTTT-TTT-CATCCGTTTTTTATAGAATCAAAGTT
1 ACATTAATGCTTTGGTGTCACAATAAAAGCTTTTCTTTCCAT-CATTTTAGATAGAATCAAAGAT
* * * * * *
3058316 TGTCTCTCAAATAAGACATATATGAATAGTCATACTAATCCCCATTCTTT-TGAAGATTAGGCGC
65 TGACACTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTAT-AAGATTAGGCAC
* * * *
3058380 CATAAACACAGTCTTCTCATAATGATACAGGATATTGATGCTTTGCTTTCACAAGAAAGGCTTTC
129 CAAAAACACAGTCTTCTAATAAGGATACAGGATATTGATGCTTTGCTTTCACAAAAAAGGCTTTC
* *
3058445 TTTCCCCCAAGTTTTGAAAAGTCTAAGTTCGTGCCTCAATTGAGACAA
194 TTCCCCCCAAGTTTTGAAAAGTCTAAGTTCGTACCTCAATTGAGACAA
3058493 ACAT
1 ACAT
3058497 GGATTCTAGT
Statistics
Matches: 209, Mismatches: 33, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
239 4 0.02
240 174 0.83
241 31 0.15
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.34
Consensus pattern (241 bp):
ACATTAATGCTTTGGTGTCACAATAAAAGCTTTTCTTTCCATCATTTTAGATAGAATCAAAGATT
GACACTAAAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTATAAGATTAGGCACCA
AAAACACAGTCTTCTAATAAGGATACAGGATATTGATGCTTTGCTTTCACAAAAAAGGCTTTCTT
CCCCCCAAGTTTTGAAAAGTCTAAGTTCGTACCTCAATTGAGACAA
Found at i:3060172 original size:476 final size:477
Alignment explanation
Indices: 3059507--3061261 Score: 2329
Period size: 476 Copynumber: 3.7 Consensus size: 477
3059497 AATATTCCCC
* * * *
3059507 TCATTAGGATAAATGATATTGATGCTTTGGTGTCACAATAAAGGCTTTT-TTTCATCCTTTTTTG
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAATAAAGGCTTTTCTTTCATCCGTTTTTA
* * * * * *
3059571 ATAGAATCAAAGTTTGTCTCTCAAATAAGACATATATTAATAGTCATA-AAATCCCCATTTTTTT
66 ATAGAATCAAAGTTTGTCTCTCAAATAAGATAAACATGAATAGTCATACTAAT-CCCATTCTTTT
* *
3059635 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAGGATATTGACGCTTTGGTTTCGC
130 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCAC
* * * *
3059700 AAGAAAGGCTTTCTTCTCCCCAATTTTCGTAAAGTCTAAGTTCATGCCTCAAATGTGACAAACCT
195 AAGAAAGGCTTTCTTCTCCCCAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* * ** *
3059765 GGATTCTAGTAATGATCTTTATTTATTTTGTGATTAGGCACTA-TAAACAAATTTTCCTTATTAG
260 GGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTAGTAAACACATTCCCCTCATTAG
* * *
3059829 GATAAATGATATTGAT-ATTTTTCTCTAGCATAGAAATCTTTTCTTAGCCCTATTTTCCTTAAAA
325 GATAAATGATATTGATGATTTTTCTCTAGCATGGAAATCTTTTTTTTGCCCTATTTTCCTTAAAA
* * *
3059893 TCAAAGTTCATCTCTTGAAAAAGACAAGCATTGAATCTCGTGACAGTCTCCACTCTTTTCAAGTT
390 TCAAAGTTCATCCCTTGAAAAAGACAAGCATTGATTCTCGTGACAGTCTCCACTCTTTTCAAGAT
*
3059958 TAAGAACCAAGAACACATTCCTT
455 TGAGAACCAAGAACACATTCCTT
* * *
3059981 TTATTAGGATACATGACATTTATGCTTTGGTGTCACAACAAAGGCTTTTCTTTCATCCGTTTTTA
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAATAAAGGCTTTTCTTTCATCCGTTTTTA
3060046 ATAGAATCAAAGTTTGTCTCTCAAATAAGATAAACATGAATAGTCATACTAATCCACATTCTTTT
66 ATAGAATCAAAGTTTGTCTCTCAAATAAGATAAACATGAATAGTCATACTAATCC-CATTCTTTT
*
3060111 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCAC
130 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCAC
* * *
3060176 AAGAAACGCTTTCTTC-CCCCTAATTTTTTAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
195 AAGAAAGGCTTTCTTCTCCCC-AATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACA
*
3060240 TGGATTCTAGTAATGATCTTCATTGATTTTGTGATTAGGCACTA-TAAACACATTCCCCTCATTA
259 TGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTAGTAAACACATTCCCCTCATTA
* * * * *
3060304 GGATAACTGGTATTGATGATTTTT-TCTAACATGGAAATATTTTTTTTGCCCTATTTTTCTTAAA
324 GGATAAATGATATTGATGATTTTTCTCTAGCATGGAAATCTTTTTTTTGCCCTATTTTCCTTAAA
* * * * *
3060368 ATCAAAGATCATCCCTCGAAAAACACAAGCATCGATTCTTGTGACAGTCTCCACTCTTTTCAAGA
389 ATCAAAGTTCATCCCTTGAAAAAGACAAGCATTGATTCTCGTGACAGTCTCCACTCTTTTCAAGA
* *
3060433 TTGCGAACCAAGAACACATTCCCT
454 TTGAGAACCAAGAACACATTCCTT
* * *
3060457 TCATTAAGATACATGACATTGATGCTTCGGTGTCACAATAAAGGCTTTTCTTTCATCCGTTTTTG
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAATAAAGGCTTTTCTTTCATCCGTTTTTA
* *
3060522 GTAGAACCAAAGTTTGTCTCTCAAATAAGATAAACATGAATAGTCATACTAATCGCCATTCTTTT
66 ATAGAATCAAAGTTTGTCTCTCAAATAAGATAAACATGAATAGTCATACTAATC-CCATTCTTTT
3060587 CAAGATTAGGCACCATAAAC--A--C-TCT--TAAGGATACACGATATTGACGCTTTGGTTTCAC
130 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCAC
* * * *
3060645 AAGAAAGGCTTTCTTGTCCCCAATTTTTGAAAAGTCTAACTTCATGCCTTAAATGAGGCAAACAT
195 AAGAAAGGCTTTCTTCTCCCCAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACAT
* * * * * * *
3060710 GGATTCTAGTAGTGATCTTCATTCAATTCGTGATTAAGCAC-AGTAAACACATTCCTCTCACTAG
260 GGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTAGTAAACACATTCCCCTCATTAG
* * ** *
3060774 GATAAATGGTATTGATGA-TCTTCTCTAGTGTGGAAATCTTTTTTTTGCCCTATTTTGCTT-AAA
325 GATAAATGATATTGATGATTTTTCTCTAGCATGGAAATCTTTTTTTTGCCCTATTTTCCTTAAAA
* * * * * * * *
3060837 TCAAAATTTACCCCTTGAAAAAGACAAGGATTGATTCTCGTGACAGACTTCTCTCTTTTTAAGAT
390 TCAAAGTTCATCCCTTGAAAAAGACAAGCATTGATTCTCGTGACAGTCTCCACTCTTTTCAAGAT
* *
3060902 TGGGAACCATGAACACATT-CTCT
455 TGAGAACCAAGAACACATTCCT-T
* * * * * * *
3060925 TCATTAGGATACATGAAATTGACGTTTTGGTGTCGCAATAAAAGCTTTTCTTTCCA-ACG-TTTA
1 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAATAAAGGCTTTTCTTT-CATCCGTTTTT
* * *
3060988 AGATACAGTCAAAGTTTGTCACTCAAATAAGACT-AACATGAATAGTCATACTAATCCCTATTCT
65 A-ATAGAATCAAAGTTTGTCTCTCAAATAAGA-TAAACATGAATAGTCATACTAATCCC-ATTCT
* * * *
3061052 TTTCAAGATTAGGCAACATAAACATAGTCTTCTCATAAGGATATATGATATTGATGCTTTGGTTT
127 TTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTT
* * * * *
3061117 CGCAAGAAAGGCTTTCGTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACGAA
192 CACAAGAAAGGCTTTCTTCTCCCCAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAA
** * *
3061182 CATGGATTCTAGTAATGATCTTTGTTTA--TT-T-CTTAGGCA-TAGTAAACATATTCCCCTCAT
257 CATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTAGTAAACACATTCCCCTCAT
3061242 TAGGATAAATGATATTGATG
322 TAGGATAAATGATATTGATG
3061262 CTTTGGTGTC
Statistics
Matches: 1126, Mismatches: 133, Indels: 47
0.86 0.10 0.04
Matches are distributed among these distances:
467 6 0.01
468 199 0.18
469 192 0.17
470 5 0.00
471 45 0.04
472 3 0.00
473 4 0.00
474 45 0.04
475 170 0.15
476 450 0.40
477 7 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (477 bp):
TCATTAGGATACATGACATTGATGCTTTGGTGTCACAATAAAGGCTTTTCTTTCATCCGTTTTTA
ATAGAATCAAAGTTTGTCTCTCAAATAAGATAAACATGAATAGTCATACTAATCCCATTCTTTTC
AAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGACGCTTTGGTTTCACA
AGAAAGGCTTTCTTCTCCCCAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATG
GATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACTAGTAAACACATTCCCCTCATTAGG
ATAAATGATATTGATGATTTTTCTCTAGCATGGAAATCTTTTTTTTGCCCTATTTTCCTTAAAAT
CAAAGTTCATCCCTTGAAAAAGACAAGCATTGATTCTCGTGACAGTCTCCACTCTTTTCAAGATT
GAGAACCAAGAACACATTCCTT
Found at i:3060187 original size:159 final size:157
Alignment explanation
Indices: 3058255--3061443 Score: 610
Period size: 158 Copynumber: 20.2 Consensus size: 157
3058245 TGAGAGAAAC
* * * * *
3058255 ATTGATGCTTTGGTGTCACAATAAAAGCTTTT-TTTCATCCGTTTTTTATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCCATTTTTCATAGAATCAAAGTTTGT
* * * *
3058319 CTCTCAAATAAGACATATATGAATAGTCATACTAATCCCCATTCTTTTGAAGATTAGGCGCCATA
66 CTCTCAAATAAGACAAACATGAAT-GTCATACTAAT-CCCATTCTTTTCAAGATTAGGCACCATA
* * * *
3058384 AACACAGTCTTCTCATAATGATACAGGAT
129 AACATAGTCTTCTCATTAGGATACATGAT
* ** * * * *
3058413 ATTGATGCTTTGCTTTCACAAGAAAGGC-TTTCTTTCCCCCAAGTTTTGA-A-AAGTCTAAGTTC
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCC-ATTTTTCATAGAA-TCAAAGTTT
* * * * * * ** *
3058475 GTGC-CTCAATTGAGACAAACATGGAT-TCTAGTAAC-GATCTTCATTCATTTCGTGATTAAGCA
64 GT-CTCTCAAATAAGACAAACATGAATGTC-A-T-ACTAATC-CCATTCTTTTCAAGATTAGGCA
** * * ** * *
3058537 CTGTAAACACATTCCCCTCATTAGGATAAACGAT
124 CCATAAACATAGTCTTCTCATTAGGATACATGAT
* * ** * * * * **
3058571 GTTGATGATTTTCTGTAACATAGAAA-TCTTTTCTTTGC--CC-TGTTTTCCTTA-AAGGAAAGT
1 ATTGATGCTTTGGTTTCACA-AGAAAGGCTTTTCTTT-CATCCAT-TTTT-CATAGAATCAAAGT
** * * * * * * * * * * *
3058631 TCATCCCTTGAAA-AAGACAAGCATCGAATCTCGTGA-TAGTCTTCACTCTCTTCAAGATTGGGA
62 TTGTCTC-TCAAATAAGACAAACAT-GAATGTCAT-ACTAATC-CCATTCTTTTCAAGATTAGGC
* * * *
3058694 ACCA-AGAACACATTC-ACTTCATTAGGATACATGAA
123 ACCATA-AACATAGTCTTC-TCATTAGGATACATGAT
* * * * * *
3058729 ATTGATGCTTTGGTGTCACAATAAAGGCTTTTCTTTCATTCATTTTTGATAGAATCAATGTTTAT
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCCATTTTTCATAGAATCAAAGTTTGT
* * * * *
3058794 CTCTCAAATAAGATAAACATAAATTGTCATGCTGATCCCCATTCTTTTTTCAAGATTGGGCACCA
66 CTCTCAAATAAGACAAACATGAA-TGTCATACTAAT-CCCATTC--TTTTCAAGATTAGGCACCA
* * *
3058859 TAAACATAGTCTTCTCATAAAGATACACGAT
127 TAAACATAGTCTTCTCATTAGGATACATGAT
* * * * * * ** * * *
3058890 ATTAACGCTTTGGTTTCGCAGGAAAAGC-TTTCTTGCCCCCAATTTTTGA-A-AAGTCTAACTTC
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCC-ATTTTTCATAGAA-TCAAAGTT-
* * * * * ** ** *
3058952 ATG-C-CTCAAATTAGGCAAACATTG-AT-TCTAGTAGTGATCTTCATTCAATTCGTGATTAAGC
63 -TGTCTCTCAAATAAGACAAACA-TGAATGTC-A-TACTAATC-CCATTCTTTTCAAGATTAGGC
* * * * *
3059013 A-CAGTAAACACATTCCTT-TCACTAGGATAAATGGT
123 ACCA-TAAACATAGT-CTTCTCATTAGGATACATGAT
* * * *** * * * *
3059048 ATTGATG-ATT-CTCTCTAGTGTGGAAA-TCTTTTATTTGC--CCTATTTTGCTTA-ATATCAAA
1 ATTGATGCTTTGGTTTC-A--CAAGAAAGGCTTTTCTTT-CATCC-ATTTTTCATAGA-ATCAAA
** * * ** * * ** * * * *
3059107 GTTCATCCCTTGAAA-AAGACAAGGATTGATTCTTGTGAC-AGTCCTCACTCTTTTTAAGATTGG
60 GTTTGTCTC-TCAAATAAGACAAACA-TGAATGTCAT-ACTAATCC-CATTCTTTTCAAGATTAG
* * * * * *
3059170 GAACCATGAACACATTC-TCTTCATTAGGATACCTGAC
121 GCACCATAAACATAGTCTTC-TCATTAGGATACATGAT
* * * * * * * *** *
3059207 ATTGATG-TTTCAGTGTCGCAATAAAAGCTTTTCTTTCCA-ACGTTTAAGATAGACTCAAAGTTT
1 ATTGATGCTTT-GGTTTCACAAGAAAGGCTTTTCTTT-CATCCATTTTTCATAGAATCAAAGTTT
* * * * * * *
3059270 GTCACTTAAATAAGACAAACATTAATAGTCAAACTAATTCCTATTCTTTTCAGGATTAGGCAACA
64 GTCTCTCAAATAAGACAAACATGAAT-GTCATACTAA-TCCCATTCTTTTCAAGATTAGGCACCA
* * * * *
3059335 CAAACATAGTTTTCTCATAAGTATATACT-AT
127 TAAACATAGTCTTCTCATTAGGATACA-TGAT
* * * * ** * * *
3059366 ATTGATGCTTTCGATTCGCAAGAAAGGC-TTTCTTCCCCCCAATTTTTGA-A-AAGTCTAAGTTC
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCC-ATTTTTCATAGAA-TCAAAGTTT
** * * * * * * ** *
3059428 GTGC-CTCAAATGGGACAAACAAGGAT-TC-TAGTAATGATCCTTGTTTATTTCGTGATCAGGCA
64 GT-CTCTCAAATAAGACAAACATGAATGTCATACTAAT--CCCAT-TCT-TTTCAAGATTAGGCA
* * ** *
3059490 -CAGTAAAAATATTCCCCTCATTAGGATAAATGAT
124 CCA-TAAACATAGTCTTCTCATTAGGATACATGAT
* * * *
3059524 ATTGATGCTTTGGTGTCACAATAAAGGCTTTT-TTTCATCCTTTTTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCCATTTTTCATAGAATCAAAGTTTGT
* * * * *
3059588 CTCTCAAATAAGACATATATTAATAGTCATA-AAATCCCCATTTTTTTCAAGATTAGGCACCATA
66 CTCTCAAATAAGACAAACATGAAT-GTCATACTAAT-CCCATTCTTTTCAAGATTAGGCACCATA
* *
3059652 AACATAGTCTTCTCATAAGGATACAGGAT
129 AACATAGTCTTCTCATTAGGATACATGAT
* * * * * *
3059681 ATTGACGCTTTGGTTTCGCAAGAAAGGC-TTTCTTCTC-CCCAATTTTCGTA-AAGTCTAAGTTC
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTT-TCATCCATTTTTCATAGAA-TCAAAGTT-
** * * * * ** ***
3059743 ATG-C-CTCAAATGTGACAAACCTGGAT-TCTAGTAATGATCTTTATT-TATTTTGTGATTAGGC
63 -TGTCTCTCAAATAAGACAAACATGAATGTC-A-TACTAATC-CCATTCT-TTTCAAGATTAGGC
* * * * *
3059804 ACTATAAACA-AATTTTCCTTATTAGGATAAATGAT
123 ACCATAAACATAGTCTT-CTCATTAGGATACATGAT
* * * * * *
3059839 ATTGAT-ATTT--TTCTCTAGCATAGAAA-TCTTTTC-TT-AGCCCTATTTTCCTTAAAATCAAA
1 ATTGATGCTTTGGTT-TC-A-CA-AGAAAGGCTTTTCTTTCA-TCC-ATTTTTCATAGAATCAAA
** * * * * * * * *
3059898 GTTCATCTCTTGAAA-AAGACAAGCATTGAATCTCGTGAC-AGTCTCCACTCTTTTCAAGTTTAA
60 GTTTGTCTC-TCAAATAAGACAAACA-TGAATGTCAT-ACTAATC-CCATTCTTTTCAAGATTAG
* * * * *
3059961 GAACCA-AGAACACATTCCTT-TTATTAGGATACATGAC
121 GCACCATA-AACATAGT-CTTCTCATTAGGATACATGAT
* * * * *
3059998 ATTTATGCTTTGGTGTCACAACAAAGGCTTTTCTTTCATCCGTTTTTAATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCCATTTTTCATAGAATCAAAGTTTGT
*
3060063 CTCTCAAATAAGATAAACATGAATAGTCATACTAATCCACATTCTTTTCAAGATTAGGCACCATA
66 CTCTCAAATAAGACAAACATGAAT-GTCATACTAATCC-CATTCTTTTCAAGATTAGGCACCATA
* *
3060128 AACATAGTCTTCTCATAAGGATACACGAT
129 AACATAGTCTTCTCATTAGGATACATGAT
* ** * *
3060157 ATTGATGCTTTGGTTTCACAAGAAACGC-TTTC-TTCCCCCTAATTTTT--TAAAAGTCTAAGTT
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCC--ATTTTTCATAGAA-TCAAAGTT
* * * * * * * **
3060218 CGTGC-CTCAAATGAGACAAACATGGAT-TCTAGTAATGATCTTCATTGATTTT-GTGATTAGGC
63 TGT-CTCTCAAATAAGACAAACATGAATGTC-A-TACTAATC-CCATT-CTTTTCAAGATTAGGC
* * * ** *
3060280 ACTATAAACACATTCCCCTCATTAGGATA-ACTGGT
123 ACCATAAACATAGTCTTCTCATTAGGATACA-TGAT
* * ** * * *
3060315 ATTGATGATTT--TTTCTAACATGGAAA-TATTTTTTTTGC--CCTATTTTTCTTAAAATCAAAG
1 ATTGATGCTTTGGTTTC--ACA-AGAAAGGCTTTTCTTT-CATCC-ATTTTTCATAGAATCAAAG
* ** * * * * * ** * *
3060375 ATCATCCCTCGAAA-AACACAAGCATCGATTCTTGTGAC-AGTCTCCACTCTTTTCAAGATT-GC
61 TTTGTCTCTC-AAATAAGACAAACAT-GAATGTCAT-ACTAATC-CCATTCTTTTCAAGATTAG-
* * * * * *
3060437 GAACCA-AGAACACATTC-CCTTCATTAAGATACATGAC
121 GCACCATA-AACATAGTCTTC-TCATTAGGATACATGAT
* * * * ** *
3060474 ATTGATGCTTCGGTGTCACAATAAAGGCTTTTCTTTCATCCGTTTTTGGTAGAACCAAAGTTTGT
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCCATTTTTCATAGAATCAAAGTTTGT
*
3060539 CTCTCAAATAAGATAAACATGAATAGTCATACTAATCGCCATTCTTTTCAAGATTAGGCACCATA
66 CTCTCAAATAAGACAAACATGAAT-GTCATACTAATC-CCATTCTTTTCAAGATTAGGCACCATA
* *
3060604 AAC--A--C-TCT--TAAGGATACACGAT
129 AACATAGTCTTCTCATTAGGATACATGAT
* * * * *
3060626 ATTGACGCTTTGGTTTCACAAGAAAGGC-TTTCTTGTC-CCCAATTTTTGA-A-AAGTCTAACTT
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTT-TCATCC-ATTTTTCATAGAA-TCAAAGTT
* * * * * * * ** ** *
3060687 CATG-C-CTTAAATGAGGCAAACATGGAT-TCTAGTAGTGATCTTCATTCAATTCGTGATTAAGC
63 --TGTCTCTCAAATAAGACAAACATGAATGTC-A-TACTAATC-CCATTCTTTTCAAGATTAGGC
* * * * * *
3060749 A-CAGTAAACACATTCCTCTCACTAGGATAAATGGT
123 ACCA-TAAACATAGTCTTCTCATTAGGATACATGAT
* * * *** * * * * *
3060784 ATTGATGATCT--TCTCTAGTGTGGAAA-TCTTTTTTTTGC--CCTATTTTGCTTA-AATCAAAA
1 ATTGATGCTTTGGTTTC-A--CAAGAAAGGCTTTTCTTT-CATCC-ATTTTTCATAGAATCAAAG
** * * ** * * * * * *
3060843 TTTACCCCTTGAAA-AAGACAAGGATTGATTCTCGTGAC-AGA-CTTC-TCTCTTTTTAAGATTG
61 TTTGTCTC-TCAAATAAGACAAACA-TGAATGTCAT-ACTA-ATC-CCAT-TCTTTTCAAGATTA
* * * * *
3060904 GGAACCATGAACACATTC-TCTTCATTAGGATACATGAA
120 GGCACCATAAACATAGTCTTC-TCATTAGGATACATGAT
* * * * * * * * *** * *
3060942 ATTGACGTTTTGGTGTCGCAATAAAAGCTTTTCTTTCCA-ACGTTTAAGATACAGTCAAAGTTTG
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTT-CATCCATTTTTCATAGAATCAAAGTTTG
* * *
3061006 TCACTCAAATAAGACTAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGATTAGGCAACAT
65 TCTCTCAAATAAGACAAACATGAAT-GTCATACTAATCCC-ATTCTTTTCAAGATTAGGCACCAT
* *
3061071 AAACATAGTCTTCTCATAAGGATATATGAT
128 AAACATAGTCTTCTCATTAGGATACATGAT
* * * ** * * *
3061101 ATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTCGTCCCCCCAATTTTTGA-A-AAGTCTAAGTTC
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCC-ATTTTTCATAGAA-TCAAAGTTT
* * * * * * ***
3061163 GTGC-CTCAAATGAGACGAACATGGAT-TC-TAGTAAT--GA-TCTTTGTTTATTTCTTAGGCA-
64 GT-CTCTCAAATAAGACAAACATGAATGTCATACTAATCCCATTC-TT-TTCA-AGATTAGGCAC
* * ** *
3061221 TAGTAAACATATTCCCCTCATTAGGATAAATGAT
125 CA-TAAACATAGTCTTCTCATTAGGATACATGAT
* * * * * * * *
3061255 ATTGATGCTTTGGTGTCGCAATAAAGGCTTTTTTTTCAACCGTATTTGATAGAATCAAAGTTTGT
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCCATTTTTCATAGAATCAAAGTTTGT
* * **
3061320 CTCTCAAAT-AGAACTAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACTGT
66 CTCTCAAATAAG-ACAAACATGAAT-GTCATACTAAT-CCCATTCTTTTCAAGATTAGGCACCAT
* * *
3061384 AAACATAGTCTTCTCA-GATG-TACACGAT
128 AAACATAGTCTTCTCATTAGGATACATGAT
* *
3061412 ATTGATGCTTTCGTATCACAAGAAAGGCTTTT
1 ATTGATGCTTTGGTTTCACAAGAAAGGCTTTT
3061444 TTCCCCCCAA
Statistics
Matches: 2140, Mismatches: 657, Indels: 469
0.66 0.20 0.14
Matches are distributed among these distances:
149 2 0.00
150 5 0.00
151 60 0.03
152 46 0.02
153 7 0.00
154 70 0.03
155 51 0.02
156 34 0.02
157 201 0.09
158 735 0.34
159 711 0.33
160 123 0.06
161 89 0.04
162 6 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (157 bp):
ATTGATGCTTTGGTTTCACAAGAAAGGCTTTTCTTTCATCCATTTTTCATAGAATCAAAGTTTGT
CTCTCAAATAAGACAAACATGAATGTCATACTAATCCCATTCTTTTCAAGATTAGGCACCATAAA
CATAGTCTTCTCATTAGGATACATGAT
Done.