Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold55
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4293517
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.26
Warning! 910309 characters in sequence are not A, C, G, or T
File 14 of 21
Found at i:3060280 original size:158 final size:157
Alignment explanation
Indices: 3059316--3061544 Score: 582
Period size: 159 Copynumber: 14.2 Consensus size: 157
3059306 ATTCCTATTC
* * * * * * * *
3059316 TTTTCAGGATTAGGCAACACAAACATAGTTTTCTCATAAGTATATACT-ATATTGATGCTTTCGA
1 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGT
* * * * **
3059380 TTCGCAAGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGC-CTCAAATGGGAC
65 TTCACAAGAAAGGCTTTCTT-CCCCCTATTTTTTAAAAGTCAAAGTTCGT-CTCTCAAATAAGAC
* **
3059444 AAACAAGGATTCTAGTAATGATCCTTGTTTA
128 AAACATGGATTCTAGTAATGAT-CTTCATTA
** * * * ** * *
3059475 -TTTCGTGATCAGGCA-CAGTAAAAATATTCCCCTCATTAGGATAAATGATATTGATGCTTTGGT
1 TTTTCAAGATTAGGCACCA-TAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGT
* * * ** * *
3059538 GTCACAATAAAGGCTTTTTTTCATCCT-TTTTTGATAGAA-TCAAAGTTTGTCTCTCAAATAAGA
65 TTCACAAGAAAGGC-TTTCTTCCCCCTATTTTT--TAAAAGTCAAAGTTCGTCTCTCAAATAAGA
* * ** * ** *
3059601 CATATATTAATAGTC-A-TAA-AATCCCCATTT
127 CAAACATGGAT--TCTAGTAATGATCTTCATTA
* *
3059631 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAGGATATTGACGCTTTGGTT
1 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTT
* * * * * **
3059696 TCGCAAGAAAGGCTTTCTTCTCCCCAATTTTCGT-AAAGTCTAAGTTCATGC-CTCAAATGTGAC
66 TCACAAGAAAGGCTTTCTTC-CCCCTATTTT-TTAAAAGTCAAAGTTCGT-CTCTCAAATAAGAC
* *
3059759 AAACCTGGATTCTAGTAATGATCTTTATTTA
128 AAACATGGATTCTAGTAATGATCTTCA-TTA
** * * * * * * *
3059790 TTTT-GTGATTAGGCACTATAAACA-AATTTTCCTTATTAGGATAAATGATATTGAT-ATTT--T
1 TTTTCAAGATTAGGCACCATAAACATAGTCTT-CTCATAAGGATACATGATATTGATGCTTTGGT
* ** * *
3059850 TCTCTAGCATAGAAA-TCTTTTCTTAGCCCTATTTTCCTTAAAA-TCAAAGTTCATCTCTTGAAA
65 T-TC-A-CA-AGAAAGGC-TTTCTTCCCCCTATTTT--TTAAAAGTCAAAGTTCGTCTC-TCAAA
* * * * * * *
3059913 -AAGACAAGCATTGAATCTCGTGACA-G-TCTCCACTC
122 TAAGACAAACATGGATTCTAGT-A-ATGATCTTCATTA
* * * * * * * * *
3059948 TTTTCAAGTTTAAGAACCA-AGAACACATTCCTT-TTATTAGGATACATGACATTTATGCTTTGG
1 TTTTCAAGATTAGGCACCATA-AACATAGT-CTTCTCATAAGGATACATGATATTGATGCTTTGG
* * ** * * *
3060011 TGTCACAACAAAGGCTTTTCTTTCATCC--GTTTTTAATAGAATCAAAGTTTGTCTCTCAAATAA
64 TTTCACAAGAAAGGC-TTTC-TTCCCCCTATTTTTTAA-A-AGTCAAAGTTCGTCTCTCAAATAA
* * * * ** *
3060074 GATAAACATGAATAGTC-A-TACTAATCCACATTC
125 GACAAACATGGAT--TCTAGTAATGATCTTCATTA
*
3060107 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTT
1 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTT
* * *
3060172 TCACAAGAAACGCTTTCTTCCCCCTAATTTTTTAAAAGTCTAAGTTCGTGC-CTCAAATGAGACA
66 TCACAAGAAAGGCTTTCTTCCCCCT-ATTTTTTAAAAGTCAAAGTTCGT-CTCTCAAATAAGACA
3060236 AACATGGATTCTAGTAATGATCTTCATTGA
129 AACATGGATTCTAGTAATGATCTTCATT-A
** * * * ** * * *
3060266 TTTT-GTGATTAGGCACTATAAACACATTCCCCTCATTAGGATA-ACTGGTATTGATGATTT--T
1 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA-TGATATTGATGCTTTGGT
* *** * ** * * *
3060327 TTCTAACATGGAAATATTTTTTTTGCCCTATTTTTCTTAAAA-TCAAAGATCATCCCTCGAAA-A
65 TTC--ACA-AGAAAGGCTTTCTTCCCCCTA-TTTT-TTAAAAGTCAAAGTTCGTCTCTC-AAATA
* * * * * * *
3060390 ACACAAGCATCGATTCTTGTGACA-G-TCTCCACTC
124 AGACAAACATGGATTCTAGT-A-ATGATCTTCATTA
* * * * * *
3060424 TTTTCAAGATT-GCGAACCA-AGAACACATTC-CCTTCATTAA-GATACATGACATTGATGCTTC
1 TTTTCAAGATTAG-GCACCATA-AACATAGTCTTC-TCA-TAAGGATACATGATATTGATGCTTT
* * * * * * * *
3060485 GGTGTCACAATAAAGGCTTTTCTTTCATCCGT-TTTTGGTAGAA-CCAAAGTTTGTCTCTCAAAT
62 GGTTTCACAAGAAAGGC-TTTC-TTC-CCCCTATTTT-TTAAAAGTCAAAGTTCGTCTCTCAAAT
* * * * ** *
3060548 AAGATAAACATGAATAGTC-A-TACTAATCGCCATTC
123 AAGACAAACATGGAT--TCTAGTAATGATCTTCATTA
* *
3060583 TTTTCAAGATTAGGCACCATAAAC--A--C-TCT--TAAGGATACACGATATTGACGCTTTGGTT
1 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTT
* * * * * * * * *
3060641 TCACAAGAAAGGCTTTCTTGTCCCCAATTTTTGAAAAGTCTAACTTCATGC-CTTAAATGAGGCA
66 TCACAAGAAAGGCTTTCTT-CCCCCTATTTTTTAAAAGTCAAAGTTCGT-CTCTCAAATAAGACA
*
3060705 AACATGGATTCTAGTAGTGATCTTCATTCA
129 AACATGGATTCTAGTAATGATCTTCATT-A
* ** * * * * * * * *
3060735 -ATTCGTGATTAAGCA-CAGTAAACACATTCCTCTCACT-AGGATAAATGGTATTGATGATCT--
1 TTTTCAAGATTAGGCACCA-TAAACATAGTCTTCTCA-TAAGGATACATGATATTGATGCTTTGG
* *** * * ** * ** *
3060795 TCTCTAGTGTGGAAA-TCTTTTTTTTGCCCTATTTTGCTT-AAA-TCAAAATTTACCCCT-TGAA
64 TTTC-A--CAAGAAAGGC-TTTCTTCCCCCTATTTT--TTAAAAGTC-AAAGTT-CGTCTCTCAA
** * * *
3060856 A-AAGACAAGGATTGATTCTCGTGACA-GA-CTTC-TCTC
121 ATAAGACAAACATGGATTCTAGT-A-ATGATCTTCAT-TA
* * * * * * * * * *
3060892 TTTTTAAGATTGGGAACCATGAACACATTC-TCTTCATTAGGATACATGAAATTGACGTTTTGGT
1 TTTTCAAGATTAGGCACCATAAACATAGTCTTC-TCATAAGGATACATGATATTGATGCTTTGGT
* * * * * * ** * * *
3060956 GTCGCAATAAAAGCTTTTCTT--TCCAACGTTTAAGATACAGTCAAAGTTTGTCACTCAAATAAG
65 TTCACAAGAAAGGC-TTTCTTCCCCCTATTTTTTA-A-A-AGTCAAAGTTCGTCTCTCAAATAAG
* * * * * *
3061019 ACTAACATGAATAGTC-A-TACTAATC-CCTATTC
126 ACAAACATGGAT--TCTAGTAATGATCTTC-ATTA
* *
3061051 TTTTCAAGATTAGGCAACATAAACATAGTCTTCTCATAAGGATATATGATATTGATGCTTTGGTT
1 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTT
* * * * * * *
3061116 TCGCAAGAAAGGCTTTCGTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGC-CTCAAATGAGACG
66 TCACAAGAAAGGCTTTC-TTCCCCCTATTTTTTAAAAGTCAAAGTTCGT-CTCTCAAATAAGACA
**
3061180 AACATGGATTCTAGTAATGATCTTTGTT-
129 AACATGGATTCTAGTAATGATCTTCATTA
* * ** * *
3061208 TATTTC----TTAGGCA-TAGTAAACATATTCCCCTCATTAGGATAAATGATATTGATGCTTTGG
1 T-TTTCAAGATTAGGCACCA-TAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGG
* * * * * * ** * *
3061268 TGTCGCAATAAAGGCTTTTTTTTCAACCGTATTTGATAGAA-TCAAAGTTTGTCTCTCAAAT-AG
64 TTTCACAAGAAAGGC--TTTCTTC-CCCCTATTTTTTAAAAGTCAAAGTTCGTCTCTCAAATAAG
* * * * ** *
3061331 AACTAACATGAATAGTC-A-TACTAATCCCCATTC
126 -ACAAACATGGAT--TCTAGTAATGATCTTCATTA
* ** * * * * *
3061364 TTTTCAGGATTAGGCACTGTAAACATAGTCTTCTCA-GATG-TACACGATATTGATGCTTTCGTA
1 TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTT
* * * * * * * **
3061427 TCACAAGAAAGGCTTTTTTCCCCCCAAATTTTGAAAAGTCTAAGTT--TCTGCCTTAAATGAGTT
66 TCACAAGAAAGGCTTTCTT-CCCCCTATTTTTTAAAAGTCAAAGTTCGTCT--CTCAAATAAGAC
*
3061490 AAACATAGATTCTAGTAATGATCTTCATT-
128 AAACATGGATTCTAGTAATGATCTTCATTA
** *
3061519 TATTTCGTGATTAGGCACTATAAACA
1 T-TTTCAAGATTAGGCACCATAAACA
3061545 CATTTTCCTT
Statistics
Matches: 1481, Mismatches: 424, Indels: 333
0.66 0.19 0.15
Matches are distributed among these distances:
149 2 0.00
150 10 0.01
151 60 0.04
152 33 0.02
153 2 0.00
154 69 0.05
155 63 0.04
156 104 0.07
157 162 0.11
158 427 0.29
159 465 0.31
160 57 0.04
161 26 0.02
162 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (157 bp):
TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTT
TCACAAGAAAGGCTTTCTTCCCCCTATTTTTTAAAAGTCAAAGTTCGTCTCTCAAATAAGACAAA
CATGGATTCTAGTAATGATCTTCATTA
Found at i:3061602 original size:311 final size:310
Alignment explanation
Indices: 3060996--3061602 Score: 735
Period size: 311 Copynumber: 1.9 Consensus size: 310
3060986 TAAGATACAG
*
3060996 TCAAAGTTTGTCACTCAAATAAGACTAACATGAATAGTCATACTAATCCCTATTCTTTTCAAGAT
1 TCAAAGTTTGTCACTCAAATAAGACTAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGAT
* * * * *
3061061 TAGGCAACATAAACATAGTCTTCTCATAAGGATATATGATATTGATGCTTTGGTTTCGCAAGAAA
66 TAGGCAACATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTCGTATCACAAGAAA
* * *
3061126 GGCTTTCGTCCCCCCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACGAACATGGATTC
131 GGCTTTCGTCCCCCCAAATTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTC
** * **
3061191 TAGTAATGATCTTTGTTTATTTCTTAGGCATAGTAAACATATTCCCCTCATTAGGATAAATGATA
196 TAGTAATGATCTTCATTTATTTCTTAGGCATAGTAAACACATTCCCCTCATTAGGATAAAAAATA
* * * * * *
3061256 TTGATGCTTTGGTGTCGCAATAAAGGCTTTTTTTTCAACCGTATTTGATAGAA
261 TTAATGATTTGCTCTAGCAATAAA-G--ATTTTTTCAACCGTATTTGATAGAA
* *
3061309 TCAAAGTTTGTCTCTCAAAT-AGAACTAACATGAATAGTCATACTAATCCCCATTCTTTTCAGGA
1 TCAAAGTTTGTCACTCAAATAAG-ACTAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGA
* * *
3061373 TTAGGC-ACTGTAAACATAGTCTTCTCA-GATG-TACACGATATTGATGCTTTCGTATCACAAGA
65 TTAGGCAAC-ATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTCGTATCACAAGA
** * **
3061435 AAGGCTTTTTTCCCCCCAAATTTTGAAAAGTCTAAGTTTC-TGCCTTAAATGAGTTAAACATAGA
129 AAGGCTTTCGTCCCCCCAAATTTTGAAAAGTCTAAG-TTCGTGCCTCAAATGAGACAAACATAGA
** **
3061499 TTCTAGTAATGATCTTCATTTATTTCGTGATTAGGCACTA-TAAACACATTTTCCTTGTTAGGAT
193 TTCTAGTAATGATCTTCATTTATTTC----TTAGGCA-TAGTAAACACATTCCCCTCATTAGGAT
*
3061563 AAAAAATATTAATGATTTTCTCTAGC-ATGAAA-ATTTTTTC
253 AAAAAATATTAATGATTTGCTCTAGCAAT-AAAGATTTTTTC
3061603 TTTGCCCTTT
Statistics
Matches: 250, Mismatches: 35, Indels: 20
0.82 0.11 0.07
Matches are distributed among these distances:
311 109 0.44
312 9 0.04
313 81 0.32
314 2 0.01
315 47 0.19
316 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (310 bp):
TCAAAGTTTGTCACTCAAATAAGACTAACATGAATAGTCATACTAATCCCCATTCTTTTCAAGAT
TAGGCAACATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTCGTATCACAAGAAA
GGCTTTCGTCCCCCCAAATTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATAGATTC
TAGTAATGATCTTCATTTATTTCTTAGGCATAGTAAACACATTCCCCTCATTAGGATAAAAAATA
TTAATGATTTGCTCTAGCAATAAAGATTTTTTCAACCGTATTTGATAGAA
Found at i:3062673 original size:470 final size:473
Alignment explanation
Indices: 3061238--3064146 Score: 3013
Period size: 470 Copynumber: 6.2 Consensus size: 473
3061228 CATATTCCCC
* * * * * * * *
3061238 TCATTAGGATA-AATGATATTGATGCTTTGGTGTCGCAATAAAGGCTTTTTTTTCAACCGTATTT
1 TCATTAGGATACAA-GACATTGATGCTTTGGTCTCGCAATAAAAGCTTTTCTTTCCATCATTTTT
* * * * *
3061302 GATAGAATCAAAGTTTGTCTCTCAAATAGAACTAACATGAATAGTCATACTAATCCCCATTCTTT
65 GATAGAATCAAAGTTTGTCACTTAAATAAAACAAACATGAATAGTCATACTAATCCCTATTCTTT
* ** * * * * *
3061367 TCAGGATTAGGCACTGTAAACATAGTCTTCTCA-GATG-TACACGATATTGATGCTTTCGTATCA
130 TCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCG
* * * * **
3061430 CAAGAAAGGCTTTTTTCCCCCCAAATTTTGAAAAGTCTAAGTTTC-TGCCTTAAATGAGTTAAAC
195 CAAGAAAGGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAG-TTCGTGCCTCAAATGAGACAAAC
* * ** **
3061494 ATAGATTCTAGTAATGATCTTCATTTATTTCGTGATTAGGCACTATAAACACATTTTCCTTGTTA
259 ATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCCCCTCATTA
** * *
3061559 GGATAAAAAATATTAATGATTTTCTCTAGCATGAAAATTTTTTCTTTGCCCTTTTTTCCTTAAAA
324 GGATAAATGATATTGATGATTTTCTCTAGCATGAAAA---TTTCTTTGCCCTATTTTCCTTAAAA
* * * * * * * * *
3061624 TAAAAGTTCAACCCTTGAAAAAGACAAGCATCAATTGTCGTGACAATCTCCCCTATTTTCAAGAT
386 TCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGATAGTCTACACTCTTTTCAAGAT
*
3061689 TGGGAACCAAGAACACATTCCTT
451 TAGGAACCAAGAACACATTCCTT
* * * *
3061712 TCATTAGGATACATGACATT-AGTGCTTTGGTGTCACAATAAAAGCTTTTCTTTCCATCGTTTTT
1 TCATTAGGATACAAGACATTGA-TGCTTTGGTCTCGCAATAAAAGCTTTTCTTTCCATCATTTTT
* * *
3061776 TATAGAATC-----TTGTCAATTAAATAAGAA-AAACTTGAATAGTCATACTAATCCCTATTCTT
65 GATAGAATCAAAGTTTGTCACTTAAATAA-AACAAACATGAATAGTCATACTAATCCCTATTCTT
* * *
3061835 TTCAAGATTAGGCACCATAAACATAGTCTTCT-AGTAAGGATATACGATTTTGACGCTTTGGTTT
129 TTCAAGATTAGGCACCATAAACATAGTCTTCTCA-TAAGGATACACGATATTGATGCTTTGGTTT
* ** * *** * * *
3061899 CGCAAGAAAGGCATTCTTTTCA--AGATTTGATG-CTTGTCT---TTCTTCCCTCCAATGAGACA
193 CGCAAGAAAGGCTTTCTTCCCACCA-ATTT-TTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * *
3061958 AACATGGATTCTAGTAATGATCTTTATTCATTTGGTGATTAGGCACTTTAAACACATTCCCCTCA
256 AACATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCCCCTCA
* * * * * * *
3062023 TTAGGAAAAATAATTTTGATGATTTTCTTTAACATGGAAATTTTTTCTTTGGCCTATTTTCCTTA
321 TTAGGATAAATGATATTGATGATTTTCTCTAGCAT-GAAA--ATTTCTTTGCCCTATTTTCCTTA
* * *
3062088 AAATCAAAGTTTA-CCC-TGAAAAAAGACAAGCATCGATTCTCGTAATAGTCTCCACTCTTTTCA
383 AAATCAAAGTTCATCCCTTG-AAAAAGACAAGCATCGATTCTCGTGATAGTCTACACTCTTTTCA
*
3062151 AGATTAGGAACCAAGAACACATTCCCT
447 AGATTAGGAACCAAGAACACATTCCTT
* * * *
3062178 TCATTAGGATACAAGACGTTGATGCTTGGGTCTCGCTATAAAAGCTTTTCTTTCCATCAATTTTG
1 TCATTAGGATACAAGACATTGATGCTTTGGTCTCGCAATAAAAGCTTTTCTTTCCATCATTTTTG
* * * * *
3062243 ATAGAATCAATGTTTGTAACTTAAATAAAACAAACACGAATAGTCATACTAACCCCTATTATTTT
66 ATAGAATCAAAGTTTGTCACTTAAATAAAACAAACATGAATAGTCATACTAATCCCTATTCTTTT
* * * * * *
3062308 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATACTAACGCTTTGATTTCAC
131 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* * * * * *
3062373 AGGAAAGGCTTTCTTCCCCCCAATTTTTGAAAAGTCTCAGATCGAGCCTCAAAT-AGGACAAACG
196 AAGAAAGGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGA-GACAAACA
* * * *
3062437 TGGATTCTAGTAATGATCTTCAATCATTTCGTGATTAAGTACTGTAAACACATTCCCCTCATTAG
260 TGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCCCCTCATTAG
*
3062502 GATAAATGATATTGATGATTTTCTCTAGCATGAAAATTT-TTT-CCCTATTTTCCTTAACATCAA
325 GATAAATGATATTGATGATTTTCTCTAGCATGAAAATTTCTTTGCCCTATTTTCCTTAAAATCAA
* * *
3062565 AGTTCATCCCTTG-AAAAGACAAGCATCGATACTTGGGATAGTCTACACTCTTTTCAAGATTAGG
390 AGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGATAGTCTACACTCTTTTCAAGATTAGG
3062629 AACCAAGAACACATTCCCTT
455 AACCAAGAACACATT-CCTT
* * *
3062649 T-ATTAGGATACATGGCATTGATGCTTGGGTCTCGCAATAAAAGCTTTTCTTTCCATCATTTTTG
1 TCATTAGGATACAAGACATTGATGCTTTGGTCTCGCAATAAAAGCTTTTCTTTCCATCATTTTTG
* * *
3062713 ATAGAATCAAAGTTTGGCACTTAAATAAAACAAACGTGAATAGTCACACTAATCCCTATTCTTTT
66 ATAGAATCAAAGTTTGTCACTTAAATAAAACAAACATGAATAGTCATACTAATCCCTATTCTTTT
* * * * * * *
3062778 CAAGATTAGGCATCGTAAACATAGTCTTCTCCTAAAGATACACGATATTAATACTTTTGTTTCGC
131 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* * * * * *
3062843 AAGACACGCTTTCTTCCCACAAATTTTTGAAAAGTCTAAGTTCATGCCTCAAATGAGATAAACTT
196 AAGAAAGGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * * * * *
3062908 CGATTCTAGTAATGATCTTCGTTCATTTTGGGATTAGGCACTATAAATACATTCTCCTCATTAGG
261 GGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCCCCTCATTAGG
* * * * *
3062973 ATAAGTGATATTGATGATTTT-TCGTTGCAT-AATCATTTCCTTGCCCTATTTTCCTTAAATTCA
326 ATAAATGATATTGATGATTTTCTC-TAGCATGAA-AATTTCTTTGCCCTATTTTCCTTAAAATCA
* * ** *
3063036 AAATTCATCCCTTGAAAAAGACTAGCATCGATTCTC---AT-G---ACGGTC-TTTCAAGATTGG
389 AAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGATAGTCTACACTCTTTTCAAGATTAG
** *
3063093 GAAAAAAGAACACATTACTT
454 GAACCAAGAACACATTCCTT
* * * * *
3063113 TCCTTAGGATACAAGACATTGATGGTTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
1 TCATTAGGATACAAGACATTGATGCTTTGGTCTCGCAATAAAAGCTTTTCTTTCCATCATTTTTG
* * * * * *
3063178 ATAGAATCAAAGTTTGTCTCCTAAATAAGATAAACATGAATAGTCATACTAATCCCAATTCTTTC
66 ATAGAATCAAAGTTTGTCACTTAAATAAAACAAACATGAATAGTCATACTAATCCCTATTCTTTT
* * *
3063243 CGAGATTAGGCACTATAAAC-TAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTTGC
131 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
* * * * *
3063307 AAGAAAAGCTTTCTTCTCACTAATTTTTGTAAAGTCTAAGTTCGTGTCTCAAATGAGACAAACAT
196 AAGAAAGGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * * * * **
3063372 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTCGGCATTATAAATACATTCTCCTTTTTAGG
261 GGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCCCCTCATTAGG
* * * *
3063437 ATAAATGATATTAATGATTTTCTCTAGCATGGAAATCTTTTCTTTACCCTATTTTGCTTAAAATC
326 ATAAATGATATTGATGATTTTCTCTAGCAT-GAAA--ATTTCTTTGCCCTATTTTCCTTAAAATC
* * **
3063502 AAAGTTCATCCCTTGAAAAAGACTAGCATCAATTCTCGTGACGGTCT-CTACTCTTTTCAAGATT
388 AAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGATAGTCTAC-ACTCTTTTCAAGATT
* *
3063566 -GGAAAACAAGAACACATTACTT
452 AGG-AACCAAGAACACATTCCTT
* * * *
3063588 TCCA-TAAGATACAAGACATTGATGGTTTGGTCTCGCAAGAAAAGCTTTT-TTCTCCACCATTTT
1 T-CATTAGGATACAAGACATTGATGCTTTGGTCTCGCAATAAAAGCTTTTCTT-TCCATCATTTT
* * * * * * * *
3063651 TGATAGAATCAAAATTTGTCTCTTAAATAAGACAAAAATAAATAGTCATAATAATACCAATTCTT
64 TGATAGAATCAAAGTTTGTCACTTAAATAAAACAAACATGAATAGTCATACTAATCCCTATTCTT
** * *
3063716 TTCGGGATTAGGCACCATAAACATAGTTTTCTCATAAGGATACACGAAATTGATGCTTTGGTTTC
129 TTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC
* * * * ** * *
3063781 GCAAGAAAGGCTTTCTTCCCACAAATTTTTGTAAAGTCAAAGTTTGCCCCTCAAATAAGACAAAA
194 GCAAGAAAGGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * * * * * *
3063846 ATTGATTCTAGTAATAACCATCATTCATTTCATGATTAGGAATTATAAACACATTCCCCTCATTA
259 ATGGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCCCCTCATTA
* * ** *
3063911 GGATAAATGATATTGATGACTTTCTTTAGCATGAGCATCTTTTCTTTGCCCTATTTTCCTAAAAA
324 GGATAAATGATATTGATGATTTTCTCTAGCATGA--A-AATTTCTTTGCCCTATTTTCCTTAAAA
** * *
3063976 TTGAAGTTCATTCCTTAAAAAAGAC-A--A--G-----C-----A-TC-A-ACTCTTTTCAAGAT
386 TCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGATAGTCTACACTCTTTTCAAGAT
*
3064023 TGGGAACCAAGAACACATTCCTT
451 TAGGAACCAAGAACACATTCCTT
* * * * * * *
3064046 TCCTTAGAATACAAAACCTTAATGCTTTGGTCTCGCAAGAAAAACTTTTCCTTTCC--CAGTTTT
1 TCATTAGGATACAAGACATTGATGCTTTGGTCTCGCAATAAAAGCTTTT-CTTTCCATCA-TTTT
* * *
3064109 TGATAGAATTAAAGTTTGTCTCTTAAATAAAATAAACA
64 TGATAGAATCAAAGTTTGTCACTTAAATAAAACAAACA
3064147 CATTCTCCTT
Statistics
Matches: 2056, Mismatches: 314, Indels: 146
0.82 0.12 0.06
Matches are distributed among these distances:
457 3 0.00
458 108 0.05
459 5 0.00
460 4 0.00
464 180 0.09
465 156 0.08
466 137 0.07
467 186 0.09
468 5 0.00
469 75 0.04
470 406 0.20
471 166 0.08
472 45 0.02
473 22 0.01
474 71 0.03
475 265 0.13
476 221 0.11
477 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (473 bp):
TCATTAGGATACAAGACATTGATGCTTTGGTCTCGCAATAAAAGCTTTTCTTTCCATCATTTTTG
ATAGAATCAAAGTTTGTCACTTAAATAAAACAAACATGAATAGTCATACTAATCCCTATTCTTTT
CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
AAGAAAGGCTTTCTTCCCACCAATTTTTGAAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
GGATTCTAGTAATGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCCCCTCATTAGG
ATAAATGATATTGATGATTTTCTCTAGCATGAAAATTTCTTTGCCCTATTTTCCTTAAAATCAAA
GTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTGATAGTCTACACTCTTTTCAAGATTAGGA
ACCAAGAACACATTCCTT
Found at i:3063894 original size:158 final size:156
Alignment explanation
Indices: 3063586--3063896 Score: 335
Period size: 158 Copynumber: 2.0 Consensus size: 156
3063576 AACACATTAC
* * * *
3063586 TTTCCATAAGATACAAGACATTGATGGTTTGGTCTCGCAAGAAAAGCTTTTTTCTCCACCATTTT
1 TTTCCATAAGATACAAGAAATTGATGCTTTGGTCTCGCAAGAAAAGCTTTCTTCTCCACAATTTT
* * * *
3063651 TGATAGAATCAAAATTTGTCTCTTAAATAAGACAAAAATAAATAGTCATAATAATACCAATTCTT
66 TGATAGAATCAAAATTTGCCCCTCAAATAAGACAAAAATAAATA-TCATAATAATACCAATTCAT
* *
3063716 TTCGGGATTAGGCACCATAAACATAGT
130 TTCAGGATTAGGAACCATAAACATAGT
* * *
3063743 TTTCTCATAAGGATACACGAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTC-CCACAAAT
1 TTTC-CATAA-GATACAAGAAATTGATGCTTTGGTCTCGCAAGAAAAGCTTTCTTCTCCAC-AAT
* ** *
3063807 TTTTG-TA-AAGTCAAAGTTTGCCCCTCAAATAAGACAAAAATTGAT-TC-TAGTAATAACCATC
63 TTTTGATAGAA-TCAAAATTTGCCCCTCAAATAAGACAAAAATAAATATCATAATAAT-ACCA--
* **
3063868 ATTCATTTCATGATTAGGAATTATAAACA
124 ATTCATTTCAGGATTAGGAACCATAAACA
3063897 CATTCCCCTC
Statistics
Matches: 127, Mismatches: 20, Indels: 13
0.79 0.12 0.08
Matches are distributed among these distances:
155 6 0.05
156 6 0.05
157 6 0.05
158 63 0.50
159 46 0.36
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (156 bp):
TTTCCATAAGATACAAGAAATTGATGCTTTGGTCTCGCAAGAAAAGCTTTCTTCTCCACAATTTT
TGATAGAATCAAAATTTGCCCCTCAAATAAGACAAAAATAAATATCATAATAATACCAATTCATT
TCAGGATTAGGAACCATAAACATAGT
Found at i:3066085 original size:476 final size:475
Alignment explanation
Indices: 3064140--3066329 Score: 2477
Period size: 475 Copynumber: 4.6 Consensus size: 475
3064130 CTTAAATAAA
* *
3064140 ATAAACACATTCTCCTT-ATTAGGATAAATGATATTGATGATTTTCTCTAGTGTGGAAATCATTT
1 ATAAACACATTCT-CTTCATTAGGATAAATGATATAGATGATTTTCTCTAGTGTGGAAATCTTTT
* * *
3064204 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACTAGCATCGATTCTCATGA
65 CTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTGAAAAAGACTAGCATCGATTCTCGTGA
* * *
3064269 CAGTCTCTC-CTCTTTTCAAGATTGCGAACCCAGAACACATTCTTTTCCTCAGGATACAAGACAT
130 CAGTCTC-CACTCTTTTCAAGATTG-GAACCAAGAACACATTCTTTTCCTTAAGATACAAGACAT
* ** *
3064333 TGATGCTTTGGACTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCT
193 TGATGCTTTGGTCTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTGTCT
* * *
3064398 CTTAAATAAGACAAACATGAATAGTCATACTAATCCCAACTCTTTTCGAGATTTGGCACCTTAAA
258 CTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGAGATTAGGCACCATAAA
** * *
3064463 CATAGTCTTCTCATAAGGATACACAAAATTGATGCTTTGTTTTCGCAAGAAAGGTTTTCTTCCC-
323 CATAGTCTTCTCATAAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTC-TCCCT
*** * * * *
3064527 ACTAATTTCAATAAAGTCCAAGTTCGTGCCTCAAATGAGATAAATATGGATTCTAGTAAAGATCT
387 ACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT
* *
3064592 TCATTCATTTTATAATTTGGCACT
452 TCATTCATTTTGTGATTTGGCACT
* ** * * * * * **
3064616 ACAAACGTATTCTCCTCATTAGGATAAATGATATTGATTATTTTCTTTTGCATGGAAATCTTTTC
1 ATAAACACATTCTCTTCATTAGGATAAATGATATAGATGATTTTCTCTAGTGTGGAAATCTTTTC
* * * ** * * *
3064681 TTTGCCTAATTTTCCTTAAAATCAAAATTCATCCTTTTAATATGGA-AAACATCGATTCTCGTAA
66 TTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTGAA-AAAGACTAGCATCGATTCTCGTGA
* * * ** * *
3064745 CAGTCTCCACACTTTTCAAGATTTGGAACCAAGAACACATT-TCCTTCTTTCGGATACATGACAA
130 CAGTCTCCACTCTTTTCAAGA-TTGGAACCAAGAACACATTCT-TTTCCTTAAGATACAAGACAT
* * * * * * * * *
3064809 TGACGCTATGGTGTC-CTAATAAAAGCCTTTCTTTCTA-CTTTTTTAGATAAAATCAAAGTATGT
193 TGATGCTTTGGTCTCAC-AAGAAAAGCTTTTCTTTCCACCGTTTTTA-ATAGAATCAAAGTTTGT
* * * * * **
3064872 CACTTAAATAAGACAAACATAAATAGTCATACCAATCCCCATTC-TTTCTAGGATTAGAAACCAT
256 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGA-GATTAGGCACCAT
* * * * ** *
3064936 AAACATAGTCCTCTCATAAGGATAGAT-AATATTGACGCTTTGCTTTC-CAAGAAAAACTTTCTT
320 AAACATAGTCTTCTCATAAGGATACATGAA-ATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTC
* * * * * *
3064999 CCAAGC-AATTTTTGTAATGTCTAAGTTCGTACCACAAATGAGGCAAACATGGATTCTAGTAATA
384 CCTA-CTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG
* *
3065063 AGCTTCACTT-ATTTTGTGATTTGGCACC
448 ATCTTCA-TTCATTTTGTGATTTGGCACT
* * *
3065091 ATAAACATATTCTCCTT-TTTAGGGTAAATGATATTA-ATGATTTTCGT-TAGTGTGGAAATCTT
1 ATAAACACATTCT-CTTCATTAGGATAAATGATA-TAGATGATTTTC-TCTAGTGTGGAAATCTT
* * * *
3065153 TTCTTTGCCTTATTTTCCATAAAATCAAATTTCATCCCATGAAAAAGACTAGCATCGATTCGCGT
63 TTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTGAAAAAGACTAGCATCGATTCTCGT
* * *
3065218 GACAATCTCCACTCTTTTCAAGATTGGGAACTAAGAACACATTAC-TTTCC-TAAGGATATAAGA
128 GACAGTCTCCACTCTTTTCAAGATT-GGAACCAAGAACACATT-CTTTTCCTTAA-GATACAAGA
* * * *
3065281 CATTGATGCTTTGGTCGCGCAAGAAAAACTTTTCTTTCCATCGTTTTTAATAGAATCAAAG-TTG
190 CATTGATGCTTTGGTCTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTG
* * * * * * * *
3065345 TCTCTTAAATAAGACAAACATGAATCGTCTTTCTAATCCAAAATCTTTTAGGGATTTGGCACCAT
255 TCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGAGATTAGGCACCAT
* * * * *
3065410 AAACATAATCTTCACATAAGGATACAAGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCT-T
320 AAACATAGTCTTCTCATAAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTCC
*
3065474 CTCACTAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACAAACATGGATTCTAGTAATGA
385 CT-ACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
3065539 TCTTCATTCATTTTGTGATTTGGCACT
449 TCTTCATTCATTTTGTGATTTGGCACT
* * * * *
3065566 ATAAACACATTTTCCTCTTTATGATAAATGATATTA-ATGATTTTCTCTAGTGTGAAAATCTTTT
1 ATAAACACATTCTCTTCATTAGGATAAATGATA-TAGATGATTTTCTCTAGTGTGGAAATCTTTT
* * * *
3065630 CTTTACCTTATTTTCCGTAAAATCAAAGTTCATCCCTTGAAAAAGACTAGCATCGATTCTCATGA
65 CTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTGAAAAAGACTAGCATCGATTCTCGTGA
* * * * * *
3065695 CGGTCTCCACTATTTTGAAGATTGAGAAACAAGAACACATTGTTTTCCTTAAGATACAAGGCATT
130 CAGTCTCCACTCTTTTCAAGATTG-GAACCAAGAACACATTCTTTTCCTTAAGATACAAGACATT
* *
3065760 GATGGTTTGGTCTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTGTGT-
194 GATGCTTTGGTCTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTGTCTC
* * * * *
3065824 TTGAAATAAGACAAAAATGTATAGTCATAATAATCCCAATTCTTTTCTAGATTAGGCACTATAAA
259 TT-AAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGAGATTAGGCACCATAAA
* * *
3065889 CATAGTCTTCTCATAAGGATACATGAAATTGAGGCTTTGGTTTCACAAGAAAGGCATTCTCCCTA
323 CATAGTCTTCTCATAAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCTA
* * * * *
3065954 CTAATTTTTGCAAAGTCTTAGTTCGTGCCTCAAATGAGATAAACGTGGATTCTTGTAATGATCTT
388 CTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT
3066019 CATTCATTTTGTGATTTGGCACT
453 CATTCATTTTGTGATTTGGCACT
* * * ** *
3066042 ATAAACACATTCTCTTCATTAGGATAAATGATATAGTTGATTTTCTTTTGCATGAAAATCTTTTC
1 ATAAACACATTCTCTTCATTAGGATAAATGATATAGATGATTTTCTCTAGTGTGGAAATCTTTTC
* * * * ** * *
3066107 TTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTTAATATGA-AAAAATTGATTCTCGTAAC
66 TTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTGAAAAAGACTAGCATCGATTCTCGTGAC
* * * *
3066171 AATC-CCTACCCTTTTCAATATTGGGGACCAAGAACACATTCTTTTCCTT-AGTATACAAGACAT
131 AGTCTCC-ACTCTTTTCAAGATT-GGAACCAAGAACACATTCTTTTCCTTAAG-ATACAAGACAT
* * **
3066234 TGATGCTTTGGTCTCGA-AGGATAAGCTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGTC
193 TGATGCTTTGGTCTC-ACAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTGTC
3066298 TCTTCAAATAAGACAAACATGAATAGTCATAC
257 TCTT-AAATAAGACAAACATGAATAGTCATAC
3066330 AAGAAATTGA
Statistics
Matches: 1423, Mismatches: 249, Indels: 84
0.81 0.14 0.05
Matches are distributed among these distances:
474 106 0.07
475 702 0.49
476 607 0.43
477 8 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
ATAAACACATTCTCTTCATTAGGATAAATGATATAGATGATTTTCTCTAGTGTGGAAATCTTTTC
TTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTGAAAAAGACTAGCATCGATTCTCGTGAC
AGTCTCCACTCTTTTCAAGATTGGAACCAAGAACACATTCTTTTCCTTAAGATACAAGACATTGA
TGCTTTGGTCTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTGTCTCTT
AAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGAGATTAGGCACCATAAACAT
AGTCTTCTCATAAGGATACATGAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTCCCTACTA
ATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
TCATTTTGTGATTTGGCACT
Found at i:3066187 original size:950 final size:950
Alignment explanation
Indices: 3064140--3066329 Score: 2726
Period size: 950 Copynumber: 2.3 Consensus size: 950
3064130 CTTAAATAAA
* * *
3064140 ATAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTCTAGTGTGGAAATCATTTC
1 ATAAACACATTCTCCTTATTAGGATAAATGATATAGATGATTTTCTTTAGTGTGGAAATCTTTTC
* * *
3064205 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACTAGCATCGATTCTCATGAC
66 TTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTGAAAAAGACTAGCATCGATTCTCGTGAC
* * * * *
3064270 AGTCTCT-CCTCTTTTCAAGATTGCGAACCCAGAACACATTCTTTTCCTCAGGATACAAGACATT
131 AATCCCTACC-CTTTTCAAGATTGGGAACCAAGAACACATTCTTTTCCTAAGGATACAAGACATT
*
3064334 GATGCTTTGGACTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
195 GATGCTTTGGTCTCG-AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * *
3064399 TTAAATAAGACAAACATGAATAGTCATACTAATCCCAACTCTTTTCGAGATTTGGCACCTTAAAC
259 TTAAATAAGACAAACATGAATAGTCATACTAATCCAAAATCTTTTAGAGATTTGGCACCATAAAC
* * * *
3064464 ATAGTCTTCTCATAAGGATACACAAAATTGATGCTTTGTTTTCGCAAGAAAGGTTTTCTTCCCAC
324 ATAATCTTCACATAAGGATACACAAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCAC
* *
3064529 TAATTTCAATAAAGTCCAAGTTCGTGCCTCAAATGAGATAAATATGGATTCTAGTAAAGATCTTC
389 TAATTTCAATAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTC
** * *
3064594 ATTCATTTTATAATTTGGCACTACAAACGTATTCTCCTCATTAGGATAAATGATATTGATTATTT
454 ATTCATTTTATAATTTGGCACTACAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTT
* * * * * * * *
3064659 TCTTTTGCATGGAAATCTTTTCTTTGCCTAATTTTCCTTAAAATCAAAATTCATCCTTTTAATAT
519 TCTCTAGCATGAAAATCTTTTCTTTACCTAATTTTCCGTAAAATCAAAATTCATCCCTTGAATAA
* * *
3064724 GGAAAACATCGATTCTCGTAACAGTCTCCACACTTTTCAAGATTTGGAACCAAGAACACATTTCC
584 AGAAAACATCGATTCTCATAACAGTCTCCACACTTTTCAAGATTTGGAAACAAGAACACATTTCC
* ** * * * * *
3064789 TTCTTTCGGATACATGACAATGACGCTATGGTGTCCTAATAAAAGCCTTTCTTTCTACTTTTTTA
649 TTCCTTAAGATACAAGACAATGACGCTATGGTCTCCTAAGAAAAGCCTTTCTTTCCACGTTTTTA
* * *
3064854 GATAAAATCAAAGTATGTCACTTAAATAAGACAAACATAAATAGTCATACCAATCCCCATTCTTT
714 GATAAAATCAAAGTATGTCACTTAAATAAGACAAAAATAAATAGTCATAACAATCCCAATTCTTT
*
3064919 CTAGGATTAGAAACCATAAACATAGTCCTCTCATAAGGATAGATAATATTGACGCTTTGCTTTCC
779 CTAGGATTAGAAACCATAAACATAGTCCTCTCATAAGGATACATAATATTGACGCTTTGCTTTCC
* * * * *
3064984 AAGAAAAACTTTCTTCCAAGCAATTTTTGTAATGTCTAAGTTCGTACCACAAATGAGGCAAACAT
844 AAGAAAAACATTCTCCCAAGCAATTTTTGCAAAGTCTAAGTTCGTACCACAAATGAGACAAACAT
3065049 GGATTCTAGTAATAAGCTTCACTTATTTTGTGATTTGGCACC
909 GGATTCTAGTAATAAGCTTCACTTATTTTGTGATTTGGCACC
* * * *
3065091 ATAAACATATTCTCCTTTTTAGGGTAAATGATATTA-ATGATTTTCGTTAGTGTGGAAATCTTTT
1 ATAAACACATTCTCCTTATTAGGATAAATGATA-TAGATGATTTTCTTTAGTGTGGAAATCTTTT
* * * *
3065155 CTTTGCCTTATTTTCCATAAAATCAAATTTCATCCCATGAAAAAGACTAGCATCGATTCGCGTGA
65 CTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTGAAAAAGACTAGCATCGATTCTCGTGA
* * *
3065220 CAATCTCC-ACTCTTTTCAAGATTGGGAACTAAGAACACATTAC-TTTCCTAAGGATATAAGACA
130 CAATC-CCTACCCTTTTCAAGATTGGGAACCAAGAACACATT-CTTTTCCTAAGGATACAAGACA
* * * *
3065283 TTGATGCTTTGGTCGCGCAAGAAAAACTTTTCTTTCCATCGTTTTTAATAGAATCAAAG-TTGTC
193 TTGATGCTTTGGTCTCG-AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * * *
3065347 TCTTAAATAAGACAAACATGAATCGTCTTTCTAATCCAAAATCTTTTAGGGATTTGGCACCATAA
257 TCTTAAATAAGACAAACATGAATAGTCATACTAATCCAAAATCTTTTAGAGATTTGGCACCATAA
* *
3065412 ACATAATCTTCACATAAGGATACA-AGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCT
322 ACATAATCTTCACATAAGGATACACA-AAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC
*** * * *
3065476 CACTAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACAAACATGGATTCTAGTAATGATC
386 CACTAATTTCAATAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATC
* * * * * *
3065541 TTCATTCATTTTGTGATTTGGCACTATAAACACATTTTCCTCTTTATGATAAATGATATTAATGA
451 TTCATTCATTTTATAATTTGGCACTACAAACACATTCTCCTCATTAGGATAAATGATATTAATGA
** * *
3065606 TTTTCTCTAGTGTGAAAATCTTTTCTTTACCTTATTTTCCGTAAAATCAAAGTTCATCCCTTGAA
516 TTTTCTCTAGCATGAAAATCTTTTCTTTACCTAATTTTCCGTAAAATCAAAATTCATCCCTTGAA
* * * * *
3065671 -AAAGACTAGCATCGATTCTCATGACGGTCTCCACTA-TTTTGAAGA-TTGAGAAACAAGAACAC
581 TAAAGA-AAACATCGATTCTCATAACAGTCTCCAC-ACTTTTCAAGATTTG-GAAACAAGAACAC
* * * * * * *
3065733 ATTGT-TTTCCTTAAGATACAAGGCATTGATGGTTTGGTCTCAC-AAGAAAAGCTTTTCTTTCCA
643 ATT-TCCTTCCTTAAGATACAAGACAATGACGCTATGGTCTC-CTAAGAAAAGCCTTTCTTTCCA
* * ** ** *
3065796 CCGTTTTTA-ATAGAATCAAAGTTTGT-GTTTGAAATAAGACAAAAATGTATAGTCATAATAATC
706 -CGTTTTTAGATAAAATCAAAGTATGTCACTT-AAATAAGACAAAAATAAATAGTCATAACAATC
** * * *
3065859 CCAATTCTTTTCTA-GATTAGGCACTATAAACATAGTCTTCTCATAAGGATACATGAA-ATTGAG
769 CCAATTC-TTTCTAGGATTAGAAACCATAAACATAGTCCTCTCATAAGGATACAT-AATATTGAC
* ** * * * *
3065922 GCTTTGGTTTCACAAGAAAGGCATTCTCCCTA-CTAATTTTTGCAAAGTCTTAGTTCGTGCCTCA
832 GCTTTGCTTTC-CAAGAAAAACATTCTCCCAAGC-AATTTTTGCAAAGTCTAAGTTCGTACCACA
* * * * * *
3065986 AATGAGATAAACGTGGATTCTTGTAATGATCTTCA-TTCATTTTGTGATTTGGCACT
895 AATGAGACAAACATGGATTCTAGTAATAAGCTTCACTT-ATTTTGTGATTTGGCACC
* * ** *
3066042 ATAAACACATTCT-CTTCATTAGGATAAATGATATAGTTGATTTTCTTTTGCATGAAAATCTTTT
1 ATAAACACATTCTCCTT-ATTAGGATAAATGATATAGATGATTTTCTTTAGTGTGGAAATCTTTT
* * * * ** * *
3066106 CTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTTAATATGA-AAAAATTGATTCTCGTAA
65 CTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTGAAAAAGACTAGCATCGATTCTCGTGA
* * * *
3066170 CAATCCCTACCCTTTTCAATATTGGGGACCAAGAACACATTCTTTTCCTTAGTATACAAGACATT
130 CAATCCCTACCCTTTTCAAGATTGGGAACCAAGAACACATTCTTTTCCTAAGGATACAAGACATT
* *
3066235 GATGCTTTGGTCTCGAAGGATAAGCTTTTCTTTCCACCGTTTTTGTTAGAATCAAAGTTTGTCTC
195 GATGCTTTGGTCTCGAA-GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
3066300 TTCAAATAAGACAAACATGAATAGTCATAC
259 TT-AAATAAGACAAACATGAATAGTCATAC
3066330 AAGAAATTGA
Statistics
Matches: 1050, Mismatches: 165, Indels: 47
0.83 0.13 0.04
Matches are distributed among these distances:
949 14 0.01
950 591 0.56
951 417 0.40
952 28 0.03
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (950 bp):
ATAAACACATTCTCCTTATTAGGATAAATGATATAGATGATTTTCTTTAGTGTGGAAATCTTTTC
TTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTGAAAAAGACTAGCATCGATTCTCGTGAC
AATCCCTACCCTTTTCAAGATTGGGAACCAAGAACACATTCTTTTCCTAAGGATACAAGACATTG
ATGCTTTGGTCTCGAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
AAATAAGACAAACATGAATAGTCATACTAATCCAAAATCTTTTAGAGATTTGGCACCATAAACAT
AATCTTCACATAAGGATACACAAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTA
ATTTCAATAAAGTCCAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCAT
TCATTTTATAATTTGGCACTACAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTC
TCTAGCATGAAAATCTTTTCTTTACCTAATTTTCCGTAAAATCAAAATTCATCCCTTGAATAAAG
AAAACATCGATTCTCATAACAGTCTCCACACTTTTCAAGATTTGGAAACAAGAACACATTTCCTT
CCTTAAGATACAAGACAATGACGCTATGGTCTCCTAAGAAAAGCCTTTCTTTCCACGTTTTTAGA
TAAAATCAAAGTATGTCACTTAAATAAGACAAAAATAAATAGTCATAACAATCCCAATTCTTTCT
AGGATTAGAAACCATAAACATAGTCCTCTCATAAGGATACATAATATTGACGCTTTGCTTTCCAA
GAAAAACATTCTCCCAAGCAATTTTTGCAAAGTCTAAGTTCGTACCACAAATGAGACAAACATGG
ATTCTAGTAATAAGCTTCACTTATTTTGTGATTTGGCACC
Found at i:3067178 original size:869 final size:867
Alignment explanation
Indices: 3065490--3067198 Score: 2453
Period size: 869 Copynumber: 2.0 Consensus size: 867
3065480 AATTTTTGTA
* * *
3065490 AAGTCTAAGTTCGTGCTTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
1 AAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATCCTAGTAATGATCTTCATTCATTTTGT
** * * * * *
3065555 GATTTGGCACTATAAACACATTTTCCTCTTTATGATAAATGATATTAATGATTTTCTCTAGTGTG
66 GATTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTCTAGCGAG
* * *
3065620 AAAATCTTTTCTTTACCTTATTTTCCGTAAAATCAAAGTTCATCCCTTGAAAAAGACTAGCATCG
131 AAAATCTTTTCTTTACCCTATTTTCCGTAAAATCAAAATTCATCCCTCGAAAAAGACTAGCATCG
* * * * *
3065685 ATTCTCATGACGGTCTCCACTATTTTGAAGATTGAGAAACAAGAACACATTGTTTTCCTTAAGAT
196 ATTCTCACGACAGTCTCAACTATTTTCAAGATTGAGAAACAAGAACACATTGTTTTACTTAAGAT
** * * * *
3065750 ACAAGGCATTGATGGTTTGGTCTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCAA
261 ACAAAACATTGATGCTTTGGTCTCAAAAGAAAAGCTTTTCCTTCCACCGTTTTTAATAAAATCAA
* * * * *
3065815 AGTTTGTGTTTGAAATAAGACAAAAATGTATAGTCATAATAATCCCAATTCTTTTCTAGATTAGG
326 AGTTTCTCTTTGAAATAAGACAAAAATGAATAGTCATAATAAACCCAATTCTTTTCGAGATTAGG
* *
3065880 CACTATAAACATAGTCTTCTCATAAGGATACATGAAATTGAGGCTTTGGTTTCACAAGAAAGGCA
391 CACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAGGCTTTGGTTTCACAAGAAAGGCA
* * * *
3065945 TTCTCCCTACTAATTTTTGCAAAGTCTTAGTTCGTGCCTCAAATGAGATAAACGTGGATTCTTGT
456 TTCTCCCGACTAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGT
* *
3066010 AATGATCTTCATTCATTTTGTGATTTGGCACTATAAACACATTCTCTTCATTAGGATAAATGATA
521 AATGATCTTCATTCATTTTGTGATTTAGCACTATAAACACATTATCTTCATTAGGATAAATGATA
*
3066075 TAGTTGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATC
586 TAGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATC
* * * * * * *
3066140 CCTTTAATATGAAAAAATTGATTCTCGTAACAATCCCTACCCTTTTCAATATTGGGGACCAAGAA
651 CCTTTAATATGAAAAAATCGATTCTCGAAACAATCCCTACACATTCCAAGATTGGGAACCAAGAA
* * *
3066205 CACATTCTTTTCCTTAGTATACAAGACATTGATGCTTTGGTCTCGAAGGATAAGCTTTTCTTTCC
716 CACATTCTTTTCCCTAGTATACAAGACATTAATGCTTTGGTCTCGAAGGAAAAGCTTTTCTTTCC
*
3066270 ACCGTTTTTGTTAGAATCAAAGTTTGTCTCTTCAAATAAGACAAACATGAATAGTCATACAAGAA
781 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTCAAATAAGACAAACATGAATAGTCATACAAGAA
3066335 ATTGATACTTTGATTTCGCATG
846 ATTGATACTTTGATTTCGCATG
* * *
3066357 AAGTCTAAGTTCATGCCTCAAATGACGA-AAACATGGATCCTAGTAATGATTTTTATTCTTTTTG
1 AAGTCTAAGTTCATGCCTCAAATGA-GACAAACATGGATCCTAGTAATGATCTTCATTCATTTTG
* *
3066421 TGATTAAGCACTATAAACACATTCTCGTCATTAGGATAAATGATATTGATGATTTTCTCTAGCGA
65 TGATTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTCTAGCGA
* * * * * * * *
3066486 GGAAATCTTTTCTTTGCCCTATTTTTCTTCAATTGAAAATTCATCCCTCGAAAAAGACTAGCATT
130 GAAAATCTTTTCTTTACCCTATTTTCCGTAAAATCAAAATTCATCCCTCGAAAAAGACTAGCATC
* * * * * * *
3066551 GATTCTCGCGATAGTCTCAACTCTTTTCAAGATTGGGAACCAAGAACACATTTTTTTACTTACGA
195 GATTCTCACGACAGTCTCAACTATTTTCAAGATTGAGAAACAAGAACACATTGTTTTACTTAAGA
* *
3066616 TACAAAACATTGATGCTTTGGTCTCAAAAGGAAAGCTTTTCCTTCC-CTCGTTTTTGATAAAATC
260 TACAAAACATTGATGCTTTGGTCTCAAAAGAAAAGCTTTTCCTTCCAC-CGTTTTTAATAAAATC
* * * *
3066680 AAAAAGTTTCTCTCTT-ACATAAGACAAACATGAATAGTCATACTAAACCCAATTCTTTTCGGGA
324 --AAAGTTTCTCT-TTGAAATAAGACAAAAATGAATAGTCATAATAAACCCAATTCTTTTCGAGA
* * * *
3066744 TTTGGCACCATAAACTTAGTCTTCTCATAAGGATACACGAAATTGATGCTTTGGTTTCGCAAGAA
386 TTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAGGCTTTGGTTTCACAAGAA
* * * * * *
3066809 AGGCTTTCTTCCGCCTAATTTTTGTAAAGTCTAAGTTCGTTCCTCAAATGAGGCAAACGTGGATT
451 AGGCATTCTCCCGACTAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATT
3066874 CTAGTAATGATCTTCATTCATTTTGTGATTTAGCACTATAAACACATTATCCTT-ATTAGGATAA
516 CTAGTAATGATCTTCATTCATTTTGTGATTTAGCACTATAAACACATTAT-CTTCATTAGGATAA
* *
3066938 ATGATATTGATGATTTTCTTTTGTATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAA
580 ATGATATAGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAA
* *
3067003 TTCATCCCTTTAATATGAAAAACATCGATTCTCGAAATAGTCTCC-ACACATTCCAAGATTGGGA
645 TTCATCCCTTTAATATGAAAAA-ATCGATTCTCGAAACAATC-CCTACACATTCCAAGATTGGGA
3067067 ACCAAGAACACATTGC-TTTCCCTAGTATACAAGACATTAATGCTTTGGTCTCGCAA-GAAAAGC
708 ACCAAGAACACATT-CTTTTCCCTAGTATACAAGACATTAATGCTTTGGTCTCG-AAGGAAAAGC
* *
3067130 TTTTTTTTGCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAATAGT
771 TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTCAAATAAGACAAACATGAATAGT
3067194 CATAC
836 CATAC
3067199 TAATCCCAAT
Statistics
Matches: 741, Mismatches: 91, Indels: 18
0.87 0.11 0.02
Matches are distributed among these distances:
866 1 0.00
867 272 0.37
868 2 0.00
869 333 0.45
870 128 0.17
871 5 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (867 bp):
AAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATCCTAGTAATGATCTTCATTCATTTTGT
GATTAAGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTCTAGCGAG
AAAATCTTTTCTTTACCCTATTTTCCGTAAAATCAAAATTCATCCCTCGAAAAAGACTAGCATCG
ATTCTCACGACAGTCTCAACTATTTTCAAGATTGAGAAACAAGAACACATTGTTTTACTTAAGAT
ACAAAACATTGATGCTTTGGTCTCAAAAGAAAAGCTTTTCCTTCCACCGTTTTTAATAAAATCAA
AGTTTCTCTTTGAAATAAGACAAAAATGAATAGTCATAATAAACCCAATTCTTTTCGAGATTAGG
CACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAGGCTTTGGTTTCACAAGAAAGGCA
TTCTCCCGACTAATTTTTGCAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGT
AATGATCTTCATTCATTTTGTGATTTAGCACTATAAACACATTATCTTCATTAGGATAAATGATA
TAGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATC
CCTTTAATATGAAAAAATCGATTCTCGAAACAATCCCTACACATTCCAAGATTGGGAACCAAGAA
CACATTCTTTTCCCTAGTATACAAGACATTAATGCTTTGGTCTCGAAGGAAAAGCTTTTCTTTCC
ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTCAAATAAGACAAACATGAATAGTCATACAAGAA
ATTGATACTTTGATTTCGCATG
Found at i:3067370 original size:476 final size:475
Alignment explanation
Indices: 3066357--3068969 Score: 2853
Period size: 476 Copynumber: 5.5 Consensus size: 475
3066347 ATTTCGCATG
* * * * *
3066357 AAGTCTAAGTTCATGCCTCAAATGACGA-AAACATGGATCCTAGTAATGATTTTTATTCTTTTTG
1 AAGTCTAAGTTCTTGCCTCAAATGA-GACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
** * * *
3066421 TGATTAAGCACTATAAACACATTCTCGTCATTAGGATAAATGATATTGATGATTTTCTCTAGCGA
65 TGATTTGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTAATGATTTTCTCTAGC-A
* * * * ** * ** *
3066486 -GGAAATCTTTTCTTTGCCCTATTTTTCTTCAATTGAAAATTCATCCCTCGAAAAAGACTAGCAT
129 TGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTTAAAATGAAAAACAT
* ** * * ** * *
3066550 TGATTCTCGCGATAGTCTCAACTCTTTTCAAGATTGGGAACCAAGAACACATTTTTTTACTTACG
194 CGATTCTCGTAATAGTCTCCACACTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCCTTAGG
* ** * * *
3066615 ATACAAAACATTGATGCTTTGGTCTCAAAAGGAAAGCTTTTCCTTCC-CTCGTTTTTGATAAAAT
259 ATACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCAC-CGTTTTTGATAGAAT
* * *
3066679 CAAAAAGTTTCTCTCTTACATAAGACAAACATGAATAGTCATACTAAACCCAATTCTTTTCGGGA
323 C--AAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTC-GGA
* * * *
3066744 TTTGGCACCATAAACTTAGTCTTCTCATAAGGATACACGAAATTGATGCTTTGGTTTCGCAAGAA
385 TTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAAGCTTTGGTTTTGCAAGAA
3066809 AGGCTTTCTTCCGC-CTAATTTTTGTA
450 AGGCTTTCTTCC-CACTAATTTTTGTA
* *
3066835 AAGTCTAAGTTCGTT-CCTCAAATGAGGCAAACGTGGATTCTAGTAATGATCTTCATTCATTTTG
1 AAGTCTAAGTTC-TTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* * * * * *
3066899 TGATTTAGCACTATAAACACATTATCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGTAT
65 TGATTTGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTAATGATTTTCTCTAGCAT
* * *
3066964 GAAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCATCCCTTTAATATGAAAAACATC
130 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTTAAAATGAAAAACATC
* * * * * *
3067029 GATTCTCGAAATAGTCTCCACACATTCCAAGATTGGGAACCAAGAACACATTGCTTTCCCTAGTA
195 GATTCTCGTAATAGTCTCCACACTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCCTTAGGA
* * *
3067094 TACAAGACATTAATGCTTTGGTCTCGCAAGAAAAGCTTTTTTTTGCACCGTTTTTGATAGAATCA
260 TACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
3067159 AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGCATTAG
325 AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGG-ATTAG
* * * * *
3067224 GCACCATAAACATAG-CTTTCCCATAAGGATAAACAAAATTGAAGCTTTGGTTTTGCATGAAAAG
389 GCACCATAAACATAGTC-TTCTCATAAGGATACACGAAATTGAAGCTTTGGTTTTGCAAGAAAGG
*
3067288 CTTTCTTCCCACTAATTTTTGTT
453 CTTTCTTCCCACTAATTTTTGTA
* *
3067311 AAGTCTAAGTTCTTGCCTCAAATGAGACAAAAAAGGATTCTAGTAATGATCTTCATTCATTTTGT
1 AAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* * * *
3067376 GATTTGGCA--ATAAACACATTCTTCTCT-TTAGGATAAATGATATAAATGATTTTCTTTTGCAT
66 GATTTGGCACTATAAACACATTCTCCT-TATTAGGATAAATGATATTAATGATTTTCTCTAGCAT
** * * *
3067438 AAAAATCTTTTCTTTTCCCTATTTTCCTTAAAATCAAAAATCATCCCTTTAAGATGAAAAACATC
130 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTTAAAATGAAAAACATC
* * * *
3067503 GATTCTCGTAATAGTCTTCATACTTTTCAAGA-TGGGAACCAAGAACGCATTCCCTTT-TTTAGG
195 GATTCTCGTAATAGTCTCCACACTTTTCAAGATTGGGAACCAAGAACACATT-CCTTTCCTTAGG
* *** * * * * * * *
3067566 ATACATGACATTGGCACTATGGTGTTGGAAGAAAAGCTTTT-TTTCCATCATTTTGGATAGAATC
259 ATACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
* * * * * **
3067630 AAAGTTTGTCACTTAACTAAAACAAACATGAATAGTCATACCAATCCCCATTCTTTCTAAGATTA
324 AAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTT-TCGGATTA
* * * * ** * *
3067695 GGTACCATAAATATAGTCTTCTTATAAGGATAGACGTTATTGATGC-TTGG-TTT-C-A-CAAGG
388 GGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAAGCTTTGGTTTTGCAAGAAAGG
**
3067755 CAATC-TCCCAACTAATTTTTGTA
453 CTTTCTTCCC-ACTAATTTTTGTA
* * * *
3067778 AAGTCTAAGTT-TGTGCCGCAAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTTATTTCG
1 AAGTCTAAGTTCT-TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTG
* * *
3067842 TGATTTGGCACTATAAACACATTCTCC-TATTAGGATAAATGATATTGATGATTTTCTTTTGCAT
65 TGATTTGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTAATGATTTTCTCTAGCAT
** * * *
3067906 GGAAATCTTTTCTTTGCTTTATTTTCCTTAAAATCAAATTTTCATCCCTTTAATATGAAAAAAAT
130 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAA-ATTCATCCCTTTAAAATGAAAAACAT
* * * * *
3067971 CGATTTTCGT-ATCAGTCTTCACACATTTCAAGATTAGGAACCAATAACACATTCCTTTCCTTAG
194 CGATTCTCGTAAT-AGTCTCCACACTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCCTTAG
* *** *
3068035 GATAGAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACTAATTTTAATAGAAT
258 GATACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
* *
3068100 CAAAGTTTGTCTCTTAAACAAGACAAACATGAATAGTTATACTAATCCCAATTCTTTTCAGGATT
323 CAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTC-GGATT
* * * * *
3068165 AAGCACTATAAATATAGTCTTCTCATAAGGATACACGAAATTGGAGCTTTGGTTTTGCATGAAAG
387 AGGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAAGCTTTGGTTTTGCAAGAAAG
*
3068230 GCTTTCTTCTCACTAATTTTTGTA
452 GCTTTCTTCCCACTAATTTTTGTA
* * * *
3068254 AAGTCTAAGTTCGTGCCTCAAATGAGACAAAAATAGATTCTAGTAACGATCTTCATTCATTTTGT
1 AAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* * * *
3068319 GATTTTGCACTATAAACACATTCTCCTCT-TTCGGATAAATAATATTAATGATTTTCTCTAGCGT
66 GATTTGGCACTATAAACACATTCTCCT-TATTAGGATAAATGATATTAATGATTTTCTCTAGCAT
* *** * * * * * * ** *
3068383 GGAAATCTTTTCCTCATCCTATTTTCTTTCAAATCAAAGTTCATCCATTGAAAAAGACTAGCATC
130 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTTAAAATGAAAAACATC
* * * * * * *
3068448 AATTCTCGTGATACTCTCCACTCTTTTCAAGATTGGGAACCAATAACACATTGCTTTCCTTGGGA
195 GATTCTCGTAATAGTCTCCACACTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCCTTAGGA
* * * * * * *
3068513 TACAATACATTGATGCTTTGTTCTGGCGAGAAAAGCTTTTCTTTACACCGCTTTTGATAAAATCA
260 TACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
* * * * * *
3068578 AAGTTTGCCGCTTAAATAAGACAAACATGAATAGTCATACTGATCCTAATTCTTTTCAAGATTTG
325 AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTC-GGATTAG
* * * *** **
3068643 GCACCACAAACATAGTCTTCTTATAAGGATACACAAAATT-AATGCTTTTACTTCACAAGAAAGG
389 GCACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAA-GCTTTGGTTTTGCAAGAAAGG
3068707 CTTTCTTAGGCTTTCCTCCCACTAATTTTTGTA
453 C--T-TT---C--T--TCCCACTAATTTTTGTA
* * * *
3068740 AAGTCCAAGCTCGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTGT-ATTCATTTTG
1 AAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCT-TCATTCATTTTG
* * * * * * *
3068804 TGGTTTGGGACAATAAACACATTTTCCTTATTAGGATATATGACATTAATGATTTTCTCTAGCGT
65 TGATTTGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTAATGATTTTCTCTAGCAT
* * * * ** * *
3068869 GGAAATCTTTTCTTTGCCCTATATTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACTAGCATT
130 GGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTTAAAATGAAAAACATC
* * * *
3068934 GATTCTCGTGACAGTCTCCCCTCTTTTCAAGATTGG
195 GATTCTCGTAATAGTCTCCACACTTTTCAAGATTGG
3068970 AGCTTTGGTT
Statistics
Matches: 1803, Mismatches: 286, Indels: 84
0.83 0.13 0.04
Matches are distributed among these distances:
466 5 0.00
467 85 0.05
468 68 0.04
469 69 0.04
470 57 0.03
471 113 0.06
472 113 0.06
473 59 0.03
474 138 0.08
475 8 0.00
476 532 0.30
477 66 0.04
478 268 0.15
479 4 0.00
482 1 0.00
484 1 0.00
485 1 0.00
486 214 0.12
487 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
AAGTCTAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
GATTTGGCACTATAAACACATTCTCCTTATTAGGATAAATGATATTAATGATTTTCTCTAGCATG
GAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAATTCATCCCTTTAAAATGAAAAACATCG
ATTCTCGTAATAGTCTCCACACTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCCTTAGGAT
ACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA
AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGATTAGGC
ACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAAGCTTTGGTTTTGCAAGAAAGGCTT
TCTTCCCACTAATTTTTGTA
Found at i:3069205 original size:275 final size:275
Alignment explanation
Indices: 3068714--3069244 Score: 798
Period size: 275 Copynumber: 1.9 Consensus size: 275
3068704 AGGCTTTCTT
* *
3068714 AGGCTTTCCTCCCACTAATTTTTGTAAAGTCCAAGCTCGTGCCTCAAATGAGACAAACATTGATT
1 AGGCTTTCCTCCCACTAATTTTTGTAAAGTCCAAGCTCATGCCTCAAATGAGACAAACAATGATT
* * * *
3068779 CTAGTAATGATCTGTATTCATTTTGTGGTTTGGGACAATAAACACATTTTCCTTATTAGGATATA
66 CTAGTAATGATCTGTATTCATTTTGTGATTTGGCACAATAAACACATTCTCCTTATTAGGATAAA
* * **
3068844 TGACATTAATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATATTCCTTAAAATCAAAGT
131 TGACATTAATGATTTTCTCTAGCATGAAAATCTTTTCTTCACCCTATATTCCTTAAAATCAAAGT
* * *
3068909 TCATCCCTTAAAAAAGACTAGCATTGATTCTCGTGACAGTCTCCCCTCTTTTCAAGATTGGAGCT
196 TCATCCATTAAAAAAGACTAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGAGCT
3068974 TTGGTTTCGCATGAA
261 TTGGTTTCGCATGAA
* * * *
3068989 AGGCTTTCTTCTCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAA-AATGAAT
1 AGGCTTTCCTCCCACTAATTTTTGTAAAGTCCAAGCTCATGCCTCAAATGAGACAAACAATG-AT
* *
3069053 TCTAGTAATGATCT-TCATTCATTTTGTGATTTGGCACTATAAACATATTCTCCTCT-TTAGGAT
65 TCTAGTAATGATCTGT-ATTCATTTTGTGATTTGGCACAATAAACACATTCTCCT-TATTAGGAT
* * *
3069116 AAATGATATTAATGATTTTCTCTAGCATGAAAATCTTTTCTTCATCCTATTTTCCTTAAAATCAA
128 AAATGACATTAATGATTTTCTCTAGCATGAAAATCTTTTCTTCACCCTATATTCCTTAAAATCAA
* *
3069181 AGTTCATCCATTGAAAAAGACTAGCATCGATTCTCGTGATAGTCTCCACTCTTTTCAAGATTGG
193 AGTTCATCCATTAAAAAAGACTAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGG
3069245 TAACCAATAA
Statistics
Matches: 229, Mismatches: 24, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
274 4 0.02
275 224 0.98
276 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (275 bp):
AGGCTTTCCTCCCACTAATTTTTGTAAAGTCCAAGCTCATGCCTCAAATGAGACAAACAATGATT
CTAGTAATGATCTGTATTCATTTTGTGATTTGGCACAATAAACACATTCTCCTTATTAGGATAAA
TGACATTAATGATTTTCTCTAGCATGAAAATCTTTTCTTCACCCTATATTCCTTAAAATCAAAGT
TCATCCATTAAAAAAGACTAGCATCGATTCTCGTGACAGTCTCCACTCTTTTCAAGATTGGAGCT
TTGGTTTCGCATGAA
Found at i:3070209 original size:26 final size:26
Alignment explanation
Indices: 3070180--3070232 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
3070170 ACTTTTCAAG
3070180 ATTGGGAACCAAAAACACATTCCTTT
1 ATTGGGAACCAAAAACACATTCCTTT
*
3070206 ATTGGGAACCAAGAACACATTCCTTT
1 ATTGGGAACCAAAAACACATTCCTTT
3070232 A
1 A
3070233 ATATGAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (26 bp):
ATTGGGAACCAAAAACACATTCCTTT
Found at i:3071765 original size:946 final size:948
Alignment explanation
Indices: 3068971--3075617 Score: 7336
Period size: 946 Copynumber: 7.0 Consensus size: 948
3068961 CAAGATTGGA
* *
3068971 GCTTTGGTTTCGCATG-AAAGGCTTTCTTCTCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCA
1 GCTTTGGTTTCACA-GAAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * * * *
3069035 AATGAGACAAAAATGAATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGCACTATAAACATA
65 AATGAGACAAACATGGATTCTAGTAATAATCATCATTCATTTTGTGATTAGGCACTATAAACACA
* * *
3069100 TTCTCCTCT-TTAGGATAAATGATATTAATGATTTTCTCTAGCATGAAAATCTTTTCTTCAT-CC
130 TTCT-CTTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTT--TGCC
* * *
3069163 TATTTTCCTTAAAATCAAAGTTCATCCATTGAAAAAGACTAGCATCGATTCTCGTGATAGTCTCC
192 TATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCC
* * * * * *
3069228 ACTCTTTTCAAGATTGGTAACCAATAACACATTACTTTCCTTAGGATACAAGACAATGACGCTTT
257 ATTCTTTTCAAGAATGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTTT
*
3069293 GGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATACAATCAAAGTTTGTCTCTTAAATAA
322 GGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
3069358 GGCAAAAATGAATAGTCATAATAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTT
387 GACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTT
* * *
3069423 CTCATAAGGATTCACGAAATTAATGCTTTGGTTTCACATGAAAGGCTTTCTTCCCACTAATTTTT
452 CTCATAAGGATACACGAAATTGATGC-TT-GTTTCGCATGAAAGGCTTTCTTCCCACTAATTTTT
* * **
3069488 GTAAAGTCTAAGCTCGTGCCTCAAATGAGAGAAAAATGGATTCTAGTAATGATCTTCATTCATTT
515 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTCATTT
* * * * *
3069553 TGTGTTTTGGCACTATAAACACATTATCCTCTTTAGGATAAATGATATTGATAATTTTCTTTTGC
580 TGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTAGC
* * * * * * * ** *
3069618 ATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAAATCAAAATTCTTCCCTTTAATAGGAAAAACA
645 ATGGAAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACTAGCA
* * * * * *
3069683 TTGATTTTCGTA-ACAGTATCCACACATTTCAAGA-TGGGAACCAAGAACACATTCCTTTCCTTA
710 TCGATTCTC-AAGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCCTTA
* * * * * **
3069746 GGATGCATGACATTGATGCTATGGTGTCGCAAGAAATA-CTTTTCTTTCTACCATTTTTAATAGA
774 GGATACAAGACATTGATGCTTTGGTCTCGCAAGAAA-AGCTTTTCTTTCCACCATTTTGGATAGA
* * * * * * *
3069810 ATCAAAATTTCTCTCTTAAATAAGAGAAACATGAATAGTCATACTAATCCTAATTCCTTT-CAGG
838 ATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACCAATCC-CATT-CTTTCCAAG
* * *
3069874 ATTAGGCACCATAAACATAGTATTCTCATAAAGACACACGAAATTGAT
901 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAT
** * * * **
3069922 GCTTTGGTTTTGCATG-AAAGCCTTTCTACCCACTAATTTTTGTAAAGT-TTAGTTCACACCTCA
1 GCTTTGGTTTCACA-GAAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * * * * *
3069985 AATAAGGGCAAA-ATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTTGACACTATAAACAC
65 AATGA-GACAAACATGGATTCTAGTAATAATCATCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * * *
3070049 ATTCCTCTCT-TTAGGATAAATGATATTAATGATTTTCTTTTGAGTGGAAATC---T-TTT---T
129 ATT-CTCTTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCT
* * * *
3070106 -TTTGCCTTAAAATCAAAATTCATCCCTTTAATATGAAAA--A--ATCGATTCTCGTAACAGTCT
193 ATTTTCCTTAAAATCAAAGTTCATCCCTTGAA-A--AAAACTAGCATCGATTCTCGTGACAGTCT
** * * * * * *
3070166 CCACACTTTTCAAGATTGGGAACCAAAAACACATTCCTTT-ATTGGGA-ACCAAGAACA--CATT
255 CCATTCTTTTCAAGAATGGGAACCAAGAACACATTACTTTCCTTAGGATA-CAAG-ACATTGA-T
* ** * * * *
3070227 CCTTT--AAT---ATGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATTAAAGCTTGTCTTTTA
317 GCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * *
3070287 AATAAGACAAACATGAATAGTCATACTAATCCCAATGCTTTTTGGGATTAGGCACCATAAATATA
382 AATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATA
* * * *
3070352 GTCTTTTCACCATGG-TAC-CAGAAATTGATGCTTTGGTTTCGCA-AAGAAGGCTTTCTTCCCAC
447 GTCTTCTCA-TAAGGATACAC-GAAATTGATGC-TT-GTTTCGCATGA-AAGGCTTTCTTCCCAC
* * * * * *
3070414 TAATTTTTGTAAAGCCTAAGTTCATGCTTCAAATGAGAGAAACGTGGATTCTAGTAGTGAACTTC
507 TAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATCTTC
* * * * * *
3070479 ATTCATTTTGTGATTTAGCACTATAAACACATTCTCCTCGTTATGATTAACGATATCGATGATTT
572 ATTCATTTTGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTT
* * * * * * * * * ** * *
3070544 CCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTTCGTAAAATTAAATTTCATCCCTTTTATAT
637 TCTTTAGCATGGAAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAA
** * * * * *
3070609 GAAAAACATCAATTCTCATA-ACATTCTCCACACTTTCCAAGATTGGGAACCAAGAACACATTCC
702 GACTAGCATCGATTCTCA-AGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCC
* * * * * * * * *
3070673 CTTCATTACGATACATGACATTGATTCTATGGTGTCACAAGAAAAGCTTTTTCTTTCCACCGTTT
766 TTTCCTTAGGATACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGC-TTTTCTTTCCACCATTT
* *
3070738 TGGATAAAATCAAAGTTTGTCACTTAAATAAGATAAACATGAATAGTCATACCAATACCCATTCT
830 TGGATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACCAAT-CCCATTCT
* * * * *
3070803 TTCCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAGATGATATTAAC
894 TTCCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAT
* * * *
3070858 ACTTT-GTTTCACAGAAAAGGCTTTCGTCGCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
1 GCTTTGGTTTCACAGAAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * * *
3070922 ATGAGACAAACATGGATTCTAGTAACAATCATCATTCATTTCGTGATTAGGCATTACAAAAACAT
66 ATGAGACAAACATGGATTCTAGTAATAATCATCATTCATTTTGTGATTAGGCACTATAAACACAT
* *
3070987 TCTCTTTATTAGGATAAATGATATTAATGATTTTCTCTAGCGTGAAAATCTTTTGTTTGCCTTAT
131 TCTCTTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCC-TAT
* * * * *
3071052 TTCCCCTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATTGATTCCCGTGACATTCTCCATT
195 TTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCCATT
* *
3071117 CTTCTCAAGAATGGGAACCAA-AAGCACATTACTTTCCTTAGGATACAAGGCATTGATGCTTTGG
260 CTTTTCAAGAATGGGAACCAAGAA-CACATTACTTTCCTTAGGATACAAGACATTGATGCTTTGG
* * * * * *
3071181 TCTCGTAAGTAAAGCTTTTATTTCCACCGTTTTTGATAGAATCAAATTTTGTCTTTTAAAGAAGA
324 TCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* **
3071246 CAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCTCTGTAAACATAGTCTTCT
389 CAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCT
* * *
3071311 TATAAGGTTACACGAAACTGATGC-T-TTTCGCATGAAAGGCTTTCTTCCCACTAATTTTTGTAA
454 CATAAGGATACACGAAATTGATGCTTGTTTCGCATGAAAGGCTTTCTTCCCACTAATTTTTGTAA
* * * * * *
3071374 AGTCAAAGTGCATGCCTCAATTGAGACAAACGTGGATTCTAGCAATGATCTTTATTCATTTTGTG
519 AGTCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTG
* * * * * * * *
3071439 ATTCGGCACTGTAAACACATTCTCCACTTTAGGATAAATGATATTAATGATTTACTCTAGCGTGG
584 ATTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTAGCATGG
* * * * * * *
3071504 AAATC-TTTGTTTACCTTATTTTCCTTAAAATGAAAGTTCAACCCTTGGAAAAGACTAGCATTGA
649 AAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACTAGCATCGA
* * * **
3071568 TTCTCAAGACTGTCTCCACTCTTTTCAAGATTGGGAACTAAGAACACATTCTTTTGTTTAGGATA
714 TTCTCAAGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCCTTAGGATA
*
3071633 CAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCTACCATTTTGGATAGAATCAAA
779 CAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCATTTTGGATAGAATCAAA
* * *
3071698 GATTGTCACTTAAATAAGATAAACATGAATAGTTATACCAATACCCATTCTTTCCAAGATTAGGC
844 GTTTGTCACTTAAATAAGACAAACATGAATAGTCATACCAAT-CCCATTCTTTCCAAGATTAGGC
* * * * * *
3071763 ACCATAAACCTAGTCTTCTTATAAGGATAGATGATATTGAC
908 ACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAT
* * *
3071804 GCTTT-GTTTCATAGAAAAGGCTTTCATCCCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
1 GCTTTGGTTTCACAGAAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
** ** * * * *
3071868 ATGAGACAAACATGGATTCTAGTAGCAATCATCATTCATTCCGTGATTGGGCATTACAAAAACAT
66 ATGAGACAAACATGGATTCTAGTAATAATCATCATTCATTTTGTGATTAGGCACTATAAACACAT
* *
3071933 TCTCTTTATTAGGATAAATGATATTGATGATTTTCTCTA-CTGTGAAAATCTTTTGTTTGCGTTA
131 TCTCTTTATTAGGATAAATGATATTGATGATTTTCTCTAGC-GTGAAAATCTTTTCTTTGC-CTA
* * * *
3071997 TTTCCCCTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATTGATTCTCGTGACATTCTCCAT
194 TTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCCAT
*
3072062 TCTTCTT-AAGAATGGGAACCAAGAGCACATTACTTTCCTTAGGATACAAGACATTGATGCTTTG
259 TCTT-TTCAAGAATGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTTTG
* * * *
3072126 GTCTCGTAAGTAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAACTTTGTCTCTTAAAGAAG
323 GTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
**** *
3072191 ACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCTTTGTAAACACAGTCTTC
388 ACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTC
* *
3072256 TCATAAGGATACACGAAACTGATGC-T-TTTCGCATGAAAGGCTTTCTTCCCACTATTTTTTGTA
453 TCATAAGGATACACGAAATTGATGCTTGTTTCGCATGAAAGGCTTTCTTCCCACTAATTTTTGTA
* * * * *
3072319 AAGTCAAAGTTCATGCCTCAATTGAGATAAACGTGGATTCTAGCT-ATGATCTTTATTCATTTTG
518 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAG-TAATGATCTTCATTCATTTTG
* * * * * * * *
3072383 CGATTCGGCACTGTAAACACATTCTCCACTTTAGGATAAATGATTTTCATGATTTTCTTTAGCGT
582 TGATTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTAGCAT
* * * *
3072448 GGAAATC-TTTGTTTACCCTATTTTCCTTAAAATGAAAGTTCATCCCTTGAAAAAGACTAGCATT
647 GGAAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACTAGCATC
* * * *
3072512 GATTCTCAAGACTGTCTCCACTCTTTTCAAGATTGGGAACTAAGAACACATTCTTTTCTTTAGGA
712 GATTCTCAAGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCCTTAGGA
*
3072577 TACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGG-TAGAATC
777 TACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTGGATAGAATC
* * * *
3072641 AAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATTCTAATCCCAATTCTTT-CAGGATTT
841 AAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACCAATCCC-ATTCTTTCCAAGATTA
* * * **
3072705 GGCAACAAAAACATAGACTTCTCATAAGGATACATAAAATTGAT
905 GGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAT
*
3072749 GCTTTGGTTTCGCA-AGAAAGGCTTTCTTCCCA-TAAATTTTTGTAAAGTCTAAGTTCATGCCTC
1 GCTTTGGTTTCACAGA-AAAGGCTTTCTTCCCACT-AATTTTTGTAAAGTCTAAGTTCATGCCTC
* * * ** *
3072812 AAATGAGACAAACACGGATTCTAGTAATAATCATCATTCATGTCGTGATTAGGTGCTATAAACAT
64 AAATGAGACAAACATGGATTCTAGTAATAATCATCATTCATTTTGTGATTAGGCACTATAAACAC
* * * * *
3072877 ATTCTCCTCATTAGGTTAAATGTTATTGATGATTTTCTTTAGCGT-AGAAATCTTTTCTTTGCCC
129 ATTCTCTTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGA-AAATCTTTTCTTTG-CC
* * * * * *
3072941 TATTGTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCAATTCTCATGATAGTCTCC
192 TATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCC
*
3073006 ACTT-TTTTCAA-AATTAGGAACCAAGAACACATT-CTTTTCCTTAGGATACAAGACATTGATGC
257 A-TTCTTTTCAAGAA-TGGGAACCAAGAACACATTAC-TTTCCTTAGGATACAAGACATTGATGC
* * * * * *
3073068 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTGGATAAAAAT-AAAGTTTATCTCTCAA
319 TTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT-AGAATCAAAGTTTGTCTCTTAA
* * * * *
3073132 ATAAGACAAACACGAATAGTCATACTTACCCCAATTCTTTTTGGGATTTGGCACCATAAACATAG
383 ATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAG
* * * * * * *
3073197 TCTTCTGATAAAGATTCATGAAATTGAT-CTTTGGTTTCGCAAGAAAGGCTTTCTTTCCACAAAT
448 TCTTCTCATAAGGATACACGAAATTGATGC-TT-GTTTCGCATGAAAGGCTTTCTTCCCACTAAT
* * * * * *
3073261 TTTTGTAATGTCCAAGTTTGTGCCTCAAATGAGACAAATGTCGATTCTAGTAATGACCTTCATTC
511 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTC
* *
3073326 ATTTTCTGATTTGGCACTATAAACACATTCTCCTCATTAGAAT-AATGATATTGATGATTTTCTT
576 ATTTTGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
* * * * * * * * **
3073390 TTGCATGGAAATCTTTTCTCTGCCATATTTTCCATAAAATCAAAGTTCATCCCTTTAATATGAAA
641 TAGCATGGAAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACT
* * * * *
3073455 AACATCGATTCTCATA-ACAGTCTCTAC-ATTTTCAAGATTAGGAACTAAGAACACATTCCCTTT
706 AGCATCGATTCTCA-AGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATT-CCTTT
* * * * *
3073518 -ATTAGGATACATGACATTGATGCTATCGTGTCGCAAGAAAAG-TGTTT-TTGTCCACCATTTTG
769 CCTTAGGATACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCT-TTTCTT-TCCACCATTTTG
* * *
3073580 GATAGAATCAAAGTTTGTCACTTAAATAAGACAAAAATGAATAGCCATACCAATCCCATTCATTC
832 GATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACCAATCCCATTCTTTC
* * **
3073645 CAAGATTTGGCACCATAAACATAGTCTTCTCATAAGGATAGACGATGTTGAT
897 CAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAT
* * *
3073697 GCTTTGGTTTTGCAC-G-AAAGGCTTTCTTTCAACTAATTTTTGTAAAGTCTAAGTTCAT-ACTC
1 GCTTTGG-TTT-CACAGAAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTC
* * * * * *
3073759 AAAAGAAACAACCAAGGATTCTACGT-ATAATCATCATTTATTTTGTGATTAGGCACTATAAACG
64 AAATGAGACAAACATGGATTCTA-GTAATAATCATCATTCATTTTGTGATTAGGCACTATAAACA
* * * *
3073823 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTCTGGCGTGGAAATCTTTTCTTTGCCC
128 CATTCTCTTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTG-CC
* * *
3073888 TATTTTCGTTAAAATCAAAGTTCATCTCTT-AAAAAAGACTAGCATCGATTCTCGTGACAGTCAC
192 TATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAA-ACTAGCATCGATTCTCGTGACAGTCTC
* * * ** *
3073952 CGTTCTTTTCAAGATTAGGAAATAAGAACACATTACTTTCCTTTGGATACAAGACATTGATGCTT
256 CATTCTTTTCAAGAATGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTT
* * *
3074017 TGGTCTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAATTTTGTCTCTTAAATA
321 TGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * ** *
3074082 GGACAAAAATGAATAGTCACAATAATCCCAATTTTTTTCAAGATTGGGCACCATAAACATAGTCT
386 AGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCT
* * * * * * *
3074147 TCTCATAACGATACACGATATTGACGCTTTGGTTTTGCAAGAAAAGCTTTCTTCCCTCTAATTTT
451 TCTCATAAGGATACACGAAATTGATGC-TT-GTTTCGCATGAAAGGCTTTCTTCCCACTAATTTT
* * * *
3074212 TGTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGCATTCTAGTAATGAACTTCATTCATT
514 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTCATT
* * * * *
3074277 TTGTGATTAGGCACTATAAACACATCCTCCTCATTAAGATAAATCATATTGATGATTTTCTATAG
579 TTGTGATTTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTAG
*
3074342 CATGGAAATCATTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACTAGC
644 CATGGAAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACTAGC
* * ** ** * * * *
3074407 ACCAATTCTCGTGACAGTCTCTGCTCTCTCCACGATTGGGATCCAAGAACACATT-CTGTTCCTT
709 ATCGATTCTCAAGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCT-TTCCTT
* ** * ** *
3074471 AGGATAGAAGACATTGATGCTTTTCTCTCGCAAGAAAAGCTTTTATTTCCACTGTTTTTGG-TAC
773 AGGATACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTGGATAG
* * * * * * *
3074535 AATCGAAGTTTATCACTTAAATAAGACAAACATGAATAGCCACACTAATCCCAATTCTTTTCGAG
837 AATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACCAATCCC-ATTCTTTCCAAG
*
3074600 ATTAGGCACCATAAAGATAGTCTTCTCATAAGGATACACGAAATTGAT
901 ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGAAATTGAT
* ** ** * * * *
3074648 ACTTTGGTTTTGCA-AAAAGGCTTTCTAACCATTATTTTTTGTAAAGTCTAAGTTCGTGCATCAA
1 GCTTTGGTTTCACAGAAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * * *
3074712 ATGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGCACTATAAACATAT
66 ATGAGACAAACATGGATTCTAGTAATAATCATCATTCATTTTGTGATTAGGCACTATAAACACAT
** * * *
3074777 TCTCCCTGTTAGGGTAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTATGCACTAT
131 TCTCTTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGC-CTAT
* ** * *
3074842 TTTCCTTAAAATCAAAGTTCATCTCTT-AAAAAATACTAATATTGATTCTCGTGACAGTCTCCAC
195 TTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAA-ACTAGCATCGATTCTCGTGACAGTCTCCAT
* *
3074906 TCTTTTCATG-ATAAGGAACCAAGAACACATTACTTTCCTT--GAT------C-------CTTT-
259 TCTTTTCAAGAAT-GGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTTTG
* * *
3074954 GTCTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAG
323 GTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* *
3075019 ACAAAAATGAATAGT-ATAAC-AGTCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTT
388 ACAAACATGAATAGTCAT-ACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTT
* * * * *
3075082 TTCATAAGGATACACGATATTGATGCTTTGGTTTCCCA-AAAACGGCTTTCTTCCCACCAATTTT
452 CTCATAAGGATACACGAAATTGATGC-TT-GTTTCGCATGAAA-GGCTTTCTTCCCACTAATTTT
* * * * *
3075146 TGTAAAATCTATGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATT
514 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTCATT
* * * * *
3075211 TCGTGATTAGGCACTCTAAACACA-TCGTCCTCATTAGGATAAATCATATTGATGATTTTCTCTA
579 TTGTGATTTGGCACTATAAACACATTC-TCCTCATTAGGATAAATGATATTGATGATTTTCTTTA
* * *
3075275 GCATGGAAATCATTTTTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTAGAAAAAGGCTAG
643 GCATGGAAATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACTAG
* * *** * *
3075340 CATCAATTTTTGTGACAGTCTCCAC-CTTTTCCAAGATTGGGATCCAAGAACACAATCCTTTCCT
708 CATCGATTCTCAAGACAGTCTCCACTCTTTT-CAAGATTGGGAACCAAGAACACATTCCTTTCCT
* * * **
3075404 TAGGATACAAGACAGTGATGTTTTGGTCTCGCAAGAAAAGCTTTT-ATTCCTACTGTTTTGG-TA
772 TAGGATACAAGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCC-ACCATTTTGGATA
* * * * * * ****
3075467 CAATCGAAGTTTGTCACTTAAATAAGACAAACATGAACAGTCGTACTAATCCTAATTCTTTTGGG
836 GAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATAGTCATACCAATCC-CATTCTTTCCAA
* * *
3075532 GATTAGGCACCATAAAGATTA-TCTTCTCATTAGGATACACAAAATTGAT
900 GATTAGGCACCATAAACA-TAGTCTTCTCATAAGGATACACGAAATTGAT
* * *
3075581 ACTTTGGTTTCGCA-AGAAGGCTTTCTTCCCACTAATT
1 GCTTTGGTTTCACAGAAAAGGCTTTCTTCCCACTAATT
3075618 AGGATAGATG
Statistics
Matches: 4928, Mismatches: 655, Indels: 244
0.85 0.11 0.04
Matches are distributed among these distances:
933 152 0.03
934 715 0.15
935 191 0.04
936 215 0.04
937 3 0.00
938 2 0.00
939 14 0.00
940 60 0.01
941 27 0.01
942 7 0.00
943 1 0.00
944 7 0.00
945 88 0.02
946 1411 0.29
947 508 0.10
948 525 0.11
949 285 0.06
950 270 0.05
951 322 0.07
952 124 0.03
953 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (948 bp):
GCTTTGGTTTCACAGAAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
ATGAGACAAACATGGATTCTAGTAATAATCATCATTCATTTTGTGATTAGGCACTATAAACACAT
TCTCTTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCTATT
TTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCCATTC
TTTTCAAGAATGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTTTGGTC
TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
AACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCA
TAAGGATACACGAAATTGATGCTTGTTTCGCATGAAAGGCTTTCTTCCCACTAATTTTTGTAAAG
TCTAAGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
TTGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTAGCATGGAA
ATCATTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACTAGCATCGATT
CTCAAGACAGTCTCCACTCTTTTCAAGATTGGGAACCAAGAACACATTCCTTTCCTTAGGATACA
AGACATTGATGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCATTTTGGATAGAATCAAAGT
TTGTCACTTAAATAAGACAAACATGAATAGTCATACCAATCCCATTCTTTCCAAGATTAGGCACC
ATAAACATAGTCTTCTCATAAGGATACACGAAATTGAT
Found at i:3072236 original size:475 final size:475
Alignment explanation
Indices: 3068971--3075617 Score: 7079
Period size: 475 Copynumber: 14.1 Consensus size: 475
3068961 CAAGATTGGA
* *
3068971 GCTTTGGTTTCGCATGAAAGGCTTTCTTCTCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
1 GCTTTGGTTTCACA-GAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * *
3069036 ATGAGACAAAAATGAATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGCACTATAAACATAT
65 ATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACAT
* * ***
3069101 TCTCCTCT-TTAGGATAAATGATATTAATGATTTTCTCTAGCATGAAAATCTTTTCTTCATCCTA
130 TCTCCT-TATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCCTA
* * *
3069165 TTTTCCTTAAAATCAAAGTTCATCCATTGAAAAAGACTAGCATCGATTCTCGTGATAGTCTCCAC
194 TTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCCAC
* * * *
3069230 TCTTTTCAAGATTGGTAACCAATAACACATTACTTTCCTTAGGATACAAGACAATGACGCTTTGG
259 TCTTTTCAAGATTGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTTTGG
* *
3069295 TCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATACAATCAAAGTTTGTCTCTTAAATAAGG
324 TCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* *
3069360 CAAAAATGAATAGTCATAATAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCT
389 CAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCT
* *
3069425 CATAAGGATTCACGAAATTAAT
454 CATAAGGATACACGAAATTGAT
* *
3069447 GCTTTGGTTTCACATGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGCTCGTGCCTCAA
1 GCTTTGGTTTCACA-GAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * *
3069512 ATGAGAGAAAAATGGATTCTAGTAATGATCTTCATTCATTTTGTGTTTTGGCACTATAAACACAT
65 ATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACAT
* * * * * * *
3069577 TATCCTCT-TTAGGATAAATGATATTGATAATTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTA
130 TCTCCT-TATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCCTA
* * * * * * *
3069641 TTTTCCTTAAAATCAAAATTCTTCCCTTTAATAGGAAAA--A-CATTGATTTTCGTAACAGTATC
194 TTTTCCTTAAAATCAAAGTTCATCCCTTGAA-A--AAAACTAGCATCGATTCTCGTGACAGTCTC
* * * * * *
3069703 CACACATTTCAAGA-TGGGAACCAAGAACACATTCCTTTCCTTAGGATGCATGACATTGATGCTA
256 CACTCTTTTCAAGATTGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTT
* * * * * *
3069767 TGGTGTCGCAAGAAATA-CTTTTCTTTCTACCATTTTTAATAGAATCAAAATTTCTCTCTTAAAT
321 TGGTCTCGCAAGAAA-AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
3069831 AAGAGAAACATGAATAGTCATACTAATCCTAATTCCTTTCAGGATTAGGCACCATAAACATAGTA
385 AAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTC
* *
3069896 TTCTCATAAAGACACACGAAATTGAT
450 TTCTCATAAGGATACACGAAATTGAT
** * * * **
3069922 GCTTTGGTTTTGCATGAAAGCCTTTCTACCCACTAATTTTTGTAAAGT-TTAGTTCACACCTCAA
1 GCTTTGGTTTCACA-GAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * * *
3069986 ATAAGGGCAAA-ATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTTGACACTATAAACACA
65 ATGA-GACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACA
* * * * *
3070050 TTC-CTCTCT-TTAGGATAAATGATATTAATGATTTTCTTTTGAGTGGAAATC---T-TTT----
129 TTCTC-CT-TATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCC
* * * *
3070105 T-TTTGCCTTAAAATCAAAATTCATCCCTTTAATATGAAAA--A--ATCGATTCTCGTAACAGTC
192 TATTTTCCTTAAAATCAAAGTTCATCCCTTGAA-A--AAAACTAGCATCGATTCTCGTGACAGTC
* * * * * *
3070165 TCCACACTTTTCAAGATTGGGAACCAAAAACACATTCCTTT-ATTGGGA-ACCAAGAACA--CAT
254 TCCACTCTTTTCAAGATTGGGAACCAAGAACACATTACTTTCCTTAGGATA-CAAG-ACATTGA-
* ** * * * *
3070226 TCCTTT--AAT---ATGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATTAAAGCTTGTCTTTT
316 TGCTTTGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
3070286 AAATAAGACAAACATGAATAGTCATACTAATCCCAATGCTTTTTGGGATTAGGCACCATAAATAT
381 AAATAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACAT
* * *
3070351 AGTCTTTTCACCATGG-TAC-CAGAAATTGAT
446 AGTCTTCTCA-TAAGGATACAC-GAAATTGAT
* * * *
3070381 GCTTTGGTTTCGCAAAGAAGGCTTTCTTCCCACTAATTTTTGTAAAGCCTAAGTTCATGCTTCAA
1 GCTTTGGTTTCACAGA-AAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * *
3070446 ATGAGAGAAACGTGGATTCTAGTAGTGAA-CTTCATTCATTTTGTGATTTAGCACTATAAACACA
65 ATGAGACAAACATGGATTCTAGTAAT-AATCTTCATTCATTTTGTGATTTGGCACTATAAACACA
** * * * * * * *
3070510 TTCTCCTCGTTATGATTAACGATATCGATGATTTCCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
129 TTCTCCTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCCTA
* * * * * * * * * *
3070575 TTTTTCGTAAAATTAAATTTCATCCCTTTTATATGAAAA--A-CATCAATTCTCATAACATTCTC
194 TTTTCCTTAAAATCAAAGTTCATCCC-TTGA-A-AAAAACTAGCATCGATTCTCGTGACAGTCTC
* * * * * * * * *
3070637 CACACTTTCCAAGATTGGGAACCAAGAACACATTCCCTTCATTACGATACATGACATTGATTCTA
256 CACTCTTTTCAAGATTGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTT
* * * * *
3070702 TGGTGTCACAAGAAAAGCTTTTTCTTTCCACCGTTTTGGATAAAATCAAAGTTTGTCACTTAAAT
321 TGGTCTCGCAAGAAAAGC-TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * **
3070767 AAGATAAACATGAATAGTCATACCAATACCC-ATTCTTTCCAAGATTAGGCACCATAAACATAGT
385 AAGACAAACATGAATAGTCATACTAAT-CCCAATTCTTTTCGGGATTAGGCACCATAAACATAGT
* * * * *
3070831 CTTCTCATAAGGATAGATGATATTAAC
449 CTTCTCATAAGGATACACGAAATTGAT
* * * *
3070858 ACTTT-GTTTCACAGAAAAGGCTTTCGTCGCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
1 GCTTTGGTTTCACAG-AAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * * * * *
3070922 ATGAGACAAACATGGATTCTAGTAACAATCATCATTCATTTCGTGATTAGGCATTACAAAAACAT
65 ATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACAT
* * * *
3070987 TCTCTTTATTAGGATAAATGATATTAATGATTTTCTCTAGCGTGAAAATCTTTTGTTTGCCTTAT
130 TCTCCTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCCTAT
* * * * * *
3071052 TTCCCCTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATTGATTCCCGTGACATTCTCCATT
195 TTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCCACT
* * *
3071117 CTTCTCAAGAATGGGAACCAA-AAGCACATTACTTTCCTTAGGATACAAGGCATTGATGCTTTGG
260 CTTTTCAAGATTGGGAACCAAGAA-CACATTACTTTCCTTAGGATACAAGACATTGATGCTTTGG
* * * * * *
3071181 TCTCGTAAGTAAAGCTTTTATTTCCACCGTTTTTGATAGAATCAAATTTTGTCTTTTAAAGAAGA
324 TCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* **
3071246 CAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCTCTGTAAACATAGTCTTCT
389 CAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCT
* * *
3071311 TATAAGGTTACACGAAACTGAT
454 CATAAGGATACACGAAATTGAT
* * *
3071333 GC--T--TTTCGCATGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCAAAGTGCATGCCTCAA
1 GCTTTGGTTTCACA-GAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * * * * *
3071394 TTGAGACAAACGTGGATTCTAGCAATGATCTTTATTCATTTTGTGATTCGGCACTGTAAACACAT
65 ATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACAT
* * * * * * *
3071459 TCTCCACT-TTAGGATAAATGATATTAATGATTTACTCTAGCGTGGAAATC-TTTGTTTACCTTA
130 TCTCC-TTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCCTA
* * * * * ** *
3071522 TTTTCCTTAAAATGAAAGTTCAACCCTTGGAAAAGACTAGCATTGATTCTCAAGACTGTCTCCAC
194 TTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCCAC
* **
3071587 TCTTTTCAAGATTGGGAACTAAGAACACATT-CTTTTGTTTAGGATACAAGACATTGATGCTTTG
259 TCTTTTCAAGATTGGGAACCAAGAACACATTAC-TTTCCTTAGGATACAAGACATTGATGCTTTG
* * * * *
3071651 GTCTCGCAAGAAAAGCTTTTCTTTCTACCATTTTGGATAGAATCAAAGATTGTCACTTAAATAAG
323 GTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * ** *
3071716 ATAAACATGAATAGTTATACCAATACCC-ATTCTTTCCAAGATTAGGCACCATAAACCTAGTCTT
388 ACAAACATGAATAGTCATACTAAT-CCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTT
* * * * *
3071780 CTTATAAGGATAGATGATATTGAC
452 CTCATAAGGATACACGAAATTGAT
* * *
3071804 GCTTT-GTTTCATAGAAAAGGCTTTCATCCCACTAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
1 GCTTTGGTTTCACAG-AAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
** * ** * * * *
3071868 ATGAGACAAACATGGATTCTAGTAGCAATCATCATTCATTCCGTGATTGGGCATTACAAAAACAT
65 ATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACAT
* * **
3071933 TCTCTTTATTAGGATAAATGATATTGATGATTTTCTCTA-CTGTGAAAATCTTTTGTTTGCGTTA
130 TCTCCTTATTAGGATAAATGATATTGATGATTTTCTCTAGC-GTGAAAATCTTTTCTTTGCCCTA
* * * * *
3071997 TTTCCCCTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATTGATTCTCGTGACATTCTCCAT
194 TTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCCAC
* *
3072062 TCTTCTT-AAGAATGGGAACCAAGAGCACATTACTTTCCTTAGGATACAAGACATTGATGCTTTG
259 TCTT-TTCAAGATTGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTTTG
* * * *
3072126 GTCTCGTAAGTAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAACTTTGTCTCTTAAAGAAG
323 GTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
**** *
3072191 ACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCTTTGTAAACACAGTCTTC
388 ACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTC
*
3072256 TCATAAGGATACACGAAACTGAT
453 TCATAAGGATACACGAAATTGAT
* * *
3072279 GC--T--TTTCGCATGAAAGGCTTTCTTCCCACTATTTTTTGTAAAGTCAAAGTTCATGCCTCAA
1 GCTTTGGTTTCACA-GAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * * * * * * *
3072340 TTGAGATAAACGTGGATTCTAGCT-ATGATCTTTATTCATTTTGCGATTCGGCACTGTAAACACA
65 ATGAGACAAACATGGATTCTAG-TAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACA
* * * * * * *
3072404 TTCTCCACT-TTAGGATAAATGATTTTCATGATTTTCTTTAGCGTGGAAATC-TTTGTTTACCCT
129 TTCTCC-TTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCCT
* * * ** *
3072467 ATTTTCCTTAAAATGAAAGTTCATCCCTTGAAAAAGACTAGCATTGATTCTCAAGACTGTCTCCA
193 ATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCCA
* *
3072532 CTCTTTTCAAGATTGGGAACTAAGAACACATT-CTTTTCTTTAGGATACAAGACATTGATGCTTT
258 CTCTTTTCAAGATTGGGAACCAAGAACACATTAC-TTTCCTTAGGATACAAGACATTGATGCTTT
* *
3072596 GGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGGTAGAATCAAAGTTTGTCACTTAAATAA
322 GGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * * *
3072661 GACAAACATGAATAGTCATTCTAATCCCAATTC-TTTCAGGATTTGGCAACAAAAACATAGACTT
387 GACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTT
**
3072725 CTCATAAGGATACATAAAATTGAT
452 CTCATAAGGATACACGAAATTGAT
*
3072749 GCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCA-TAAATTTTTGTAAAGTCTAAGTTCATGCCTCA
1 GCTTTGGTTTCAC-AGAAAGGCTTTCTTCCCACT-AATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * * * ** *
3072813 AATGAGACAAACACGGATTCTAGTAATAATCATCATTCATGTCGTGATTAGGTGCTATAAACATA
64 AATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACA
* * * *
3072878 TTCTCCTCATTAGGTTAAATGTTATTGATGATTTTCTTTAGCGT-AGAAATCTTTTCTTTGCCCT
129 TTCTCCTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGA-AAATCTTTTCTTTGCCCT
* * * * * *
3072942 ATTGTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCAATTCTCATGATAGTCTCCA
193 ATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCCA
* * *
3073007 CTTTTTTCAAAATTAGGAACCAAGAACACATT-CTTTTCCTTAGGATACAAGACATTGATGCTTT
258 CTCTTTTCAAGATTGGGAACCAAGAACACATTAC-TTTCCTTAGGATACAAGACATTGATGCTTT
* * * * * *
3073071 GGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTGGATAAAAAT-AAAGTTTATCTCTCAAATA
322 GGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT-AGAATCAAAGTTTGTCTCTTAAATA
* * * * *
3073135 AGACAAACACGAATAGTCATACTTACCCCAATTCTTTTTGGGATTTGGCACCATAAACATAGTCT
386 AGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCT
* * * *
3073200 TCTGATAAAGATTCATGAAATTGAT
451 TCTCATAAGGATACACGAAATTGAT
* * * * * **
3073225 -CTTTGGTTTCGCAAGAAAGGCTTTCTTTCCACAAATTTTTGTAATGTCCAAGTTTGTGCCTCAA
1 GCTTTGGTTTCAC-AGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
** * * * *
3073289 ATGAGACAAATGTCGATTCTAGTAATGACCTTCATTCATTTTCTGATTTGGCACTATAAACACAT
65 ATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACAT
* * * * * * * *
3073354 TCTCCTCATTAGAAT-AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTCTGCCATAT
130 TCTCCTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCCTAT
* * * * *
3073418 TTTCCATAAAATCAAAGTTCATCCCTTTAATATGAAAA--A-CATCGATTCTCATAACAGTCTCT
195 TTTCCTTAAAATCAAAGTTCATCCCTTGAA-A--AAAACTAGCATCGATTCTCGTGACAGTCTCC
* * * * * * *
3073480 AC-ATTTTCAAGATTAGGAACTAAGAACACATTCCCTTT-ATTAGGATACATGACATTGATGCTA
257 ACTCTTTTCAAGATTGGGAACCAAGAACACATT-ACTTTCCTTAGGATACAAGACATTGATGCTT
* * * * *
3073543 TCGTGTCGCAAGAAAAG-TGTTT-TTGTCCACCATTTTGGATAGAATCAAAGTTTGTCACTTAAA
321 TGGTCTCGCAAGAAAAGCT-TTTCTT-TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * * ** *
3073606 TAAGACAAAAATGAATAGCCATACCAATCCC-ATTCATTCCAAGATTTGGCACCATAAACATAGT
384 TAAGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGT
* **
3073670 CTTCTCATAAGGATAGACGATGTTGAT
449 CTTCTCATAAGGATACACGAAATTGAT
* * *
3073697 GCTTTGGTTTTGCAC-GAAAGGCTTTCTTTCAACTAATTTTTGTAAAGTCTAAGTTCAT-ACTCA
1 GCTTTGG-TTT-CACAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * * * * * *
3073760 AAAGAAACAACCAAGGATTCTACGT-ATAATCATCATTTATTTTGTGATTAGGCACTATAAACGC
64 AATGAGACAAACATGGATTCTA-GTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACAC
* * *
3073824 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTCTGGCGTGGAAATCTTTTCTTTGCCCT
128 ATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCCT
* * *
3073889 ATTTTCGTTAAAATCAAAGTTCATCTCTT-AAAAAAGACTAGCATCGATTCTCGTGACAGTCACC
193 ATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAA-ACTAGCATCGATTCTCGTGACAGTCTCC
** * ** *
3073953 GTTCTTTTCAAGATTAGGAAATAAGAACACATTACTTTCCTTTGGATACAAGACATTGATGCTTT
257 ACTCTTTTCAAGATTGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTTT
* * * *
3074018 GGTCTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAATTTTGTCTCTTAAATAG
322 GGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * ** *
3074083 GACAAAAATGAATAGTCACAATAATCCCAATTTTTTTCAAGATTGGGCACCATAAACATAGTCTT
387 GACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTT
* * *
3074148 CTCATAACGATACACGATATTGAC
452 CTCATAAGGATACACGAAATTGAT
* * **
3074172 GCTTTGGTTTTGCA-AGAAAAGCTTTCTTCCCTCTAATTTTTGTAAAGTCTAAGTTTGTGCCTCA
1 GCTTTGG-TTT-CACAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* *
3074236 AATGAGACAAACATGCATTCTAGTAATGAA-CTTCATTCATTTTGTGATTAGGCACTATAAACAC
64 AATGAGACAAACATGGATTCTAGTAAT-AATCTTCATTCATTTTGTGATTTGGCACTATAAACAC
* * * * * * *
3074300 ATCCTCCTCATTAAGATAAATCATATTGATGATTTTCTATAGCATGGAAATCATTTT-TTTGCCC
128 ATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATC-TTTTCTTTGCCC
* * * *
3074364 TATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAGACTAGCACCAATTCTCGTGACAGTCTCT
192 TATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCC
* * * * * *
3074429 GCTCTCTCCACGATTGGGATCCAAGAACACATT-CTGTTCCTTAGGATAGAAGACATTGATGCTT
257 ACTCTTTTCAAGATTGGGAACCAAGAACACATTACT-TTCCTTAGGATACAAGACATTGATGCTT
** * * * * * * *
3074493 TTCTCTCGCAAGAAAAGCTTTTATTTCCACTGTTTTTGGTACAATCGAAGTTTATCACTTAAATA
321 TGGTCTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
3074558 AGACAAACATGAATAGCCACACTAATCCCAATTCTTTTCGAGATTAGGCACCATAAAGATAGTCT
386 AGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCT
3074623 TCTCATAAGGATACACGAAATTGAT
451 TCTCATAAGGATACACGAAATTGAT
* ** * ** * * * *
3074648 ACTTTGGTTTTGCAAAAAGGCTTTCTAACCATTATTTTTTGTAAAGTCTAAGTTCGTGCATCAAA
1 GCTTTGGTTTCACAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * *
3074713 TGAGATAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGCACTATAAACATATT
66 TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACATT
* * * * *
3074778 CTCCCTGTTAGGGTAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTATGCACTATT
131 CTCCTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCCTATT
* ** *
3074843 TTCCTTAAAATCAAAGTTCATCTCTT-AAAAAATACTAATATTGATTCTCGTGACAGTCTCCACT
196 TTCCTTAAAATCAAAGTTCATCCCTTGAAAAAA-ACTAGCATCGATTCTCGTGACAGTCTCCACT
* **
3074907 CTTTTCATGATAAGGAACCAAGAACACATTACTTTCCTT--GAT------C-------CTTT-GT
260 CTTTTCAAGATTGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTTTGGT
* * *
3074956 CTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCCCTTAAATAAGAC
325 CTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * *
3075021 AAAAATGAATAGT-ATAAC-AGTCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTTT
390 AAACATGAATAGTCAT-ACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCT
*
3075084 CATAAGGATACACGATATTGAT
454 CATAAGGATACACGAAATTGAT
* * * * * * *
3075106 GCTTTGGTTTCCCAAAAACGGCTTTCTTCCCACCAATTTTTGTAAAATCTATGTTCGTACCTCAA
1 GCTTTGGTTTCACAGAAA-GGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAA
* * *
3075171 ATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTCGTGATTAGGCACTCTAAACACA-
65 ATGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACAT
* * * *
3075235 TCGTCCTCATTAGGATAAATCATATTGATGATTTTCTCTAGCATGGAAATCATTTT-TTTGCCCT
130 TC-TCCTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATC-TTTTCTTTGCCCT
* ** * * *
3075299 ATTTTCCTTAAAATCAAAGTTCATCCCTAGAAAAAGGCTAGCATCAATTTTTGTGACAGTCTCCA
193 ATTTTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCCA
* * * * *
3075364 C-CTTTTCCAAGATTGGGATCCAAGAACACAATCCTTTCCTTAGGATACAAGACAGTGATGTTTT
258 CTCTTTT-CAAGATTGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTTT
* * * * * *
3075428 GGTCTCGCAAGAAAAGCTTTT-ATTCCTACTG-TTTTGGTACAATCGAAGTTTGTCACTTAAATA
322 GGTCTCGCAAGAAAAGCTTTTCTTTCC-ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
3075491 AGACAAACATGAACAGTCGTACTAATCCTAATTCTTTTGGGGATTAGGCACCATAAAGATTA-TC
386 AGACAAACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACA-TAGTC
* *
3075555 TTCTCATTAGGATACACAAAATTGAT
450 TTCTCATAAGGATACACGAAATTGAT
* *
3075581 ACTTTGGTTTCGCA-AGAAGGCTTTCTTCCCACTAATT
1 GCTTTGGTTTCACAGA-AAGGCTTTCTTCCCACTAATT
3075618 AGGATAGATG
Statistics
Matches: 5171, Mismatches: 853, Indels: 296
0.82 0.13 0.05
Matches are distributed among these distances:
458 88 0.02
459 452 0.09
460 114 0.02
461 5 0.00
462 1 0.00
463 2 0.00
464 46 0.01
465 63 0.01
466 1 0.00
467 2 0.00
468 1 0.00
469 29 0.01
470 114 0.02
471 469 0.09
472 416 0.08
473 279 0.05
474 701 0.14
475 1353 0.26
476 902 0.17
477 127 0.02
478 3 0.00
479 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (475 bp):
GCTTTGGTTTCACAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
TGAGACAAACATGGATTCTAGTAATAATCTTCATTCATTTTGTGATTTGGCACTATAAACACATT
CTCCTTATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGAAAATCTTTTCTTTGCCCTATT
TTCCTTAAAATCAAAGTTCATCCCTTGAAAAAAACTAGCATCGATTCTCGTGACAGTCTCCACTC
TTTTCAAGATTGGGAACCAAGAACACATTACTTTCCTTAGGATACAAGACATTGATGCTTTGGTC
TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
AACATGAATAGTCATACTAATCCCAATTCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCA
TAAGGATACACGAAATTGAT
Found at i:3076520 original size:476 final size:476
Alignment explanation
Indices: 3075615--3083839 Score: 8790
Period size: 476 Copynumber: 17.4 Consensus size: 476
3075605 CTTCCCACTA
* * * *
3075615 ATTAGGATAGATGGTATTGTTGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCGTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * * * ***
3075680 AAAATCAAAGCTCATCTCTTAAAAAAGACTAGTATCGATTCTCATGACAGTCTTTGCTCTTTTCA
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCA
* * * * * * * *
3075745 TGATTAGGAACCAAGAACACATTACTTTCCTTAGGATGCAAGACATGTATCGATTCTCATGACAG
131 AGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACA--T-T-GATGCT-TTG---G
* * * * ** * *
3075810 TCTCGTAGGAAAAGCTTTTCTTTTCACTATTTTTGATAGAATCAAAGTTTGTCCCATAAATAAGA
188 TGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * * *
3075875 CAAAAATGAATAGTCATAATAATCCCAATTCTTTTCGAGATTAGGCACCATAAACATAATATTTT
253 CAAACATGAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCT
* * ** * *
3075940 GATAAGGATACACGATATTTATGCTTTAATTTCACAAAAAAGGCTTTCTTCCCACTAATTTTTGT
318 CATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGT
* * * * *
3076005 AAAGTCTAAGTTCGTACCTCAAATAAGATAAATATGGATTCCAGTAATGATCATT-ATTCATTTT
383 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC-TTCATTCATTTT
* * *
3076069 GTAATTAGGTACTATAAACACATTCTCTTT
447 GTGATTAGGCACTATAAACACATTCTCCTT
* * *
3076099 ATTAGGATAAATCATATTGATGATTTTCTCTAGTGTGGAAATCATTTCTTTGCCCTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * *
3076164 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCAACGATTCTCGTGACAGTCTCCATTCTTCTCA
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCA
* * * * *
3076229 AGATTGGGAACCAAGAACACATTACTTTCCTTAGGATACAGGACATTAATGCTTTGGTCTCGCAA
131 AGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
* * *
3076294 GAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAACTTTGTCTCTTAAATAAGACAAACATG
196 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* *
3076359 AATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACTATAAACATAGTCTTCTCGTAAGGA
261 AATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * *
3076424 TAAACGAAATTGATGCTTTGGTTTCG-AAGGAAAGGCTTTCTTCCCACTAGTTTTTGTAAAGTCT
326 TACACGATATTGATGCTTTGGTTTCGCAA-GAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCT
* * *
3076488 AAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTCTGATTTG
390 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
3076553 GCACTATAAACACATTCTCCTCT
455 GCACTATAAACACATTCTCCT-T
* *
3076576 -TTAGGATAAATGACATTAATGATTTTCTCTAGCGTGGAAATCTTTTC-TTGACCCTATTTTCCT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTG-CCCTATTTTCCT
* * * ** * * * *
3076639 TAAAATTAAAGTTCATCCCTTGAAAAAGGCTAGCATCGATTCTTATGATAGTTTCCACTCTGTTC
65 TAAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTC
* * * *
3076704 AAGATTGGGAACCAAGAACACATTCCTTTTC-TTGGGATACAAGACATTGATGCTTTGGTCTTGC
130 AAGATTGGGAACCAAGAACACATTCC-TTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* * * * * *
3076768 AAGAAAAGCTTTTCTCTCCACAGTTTTTGATTGAGTCAAAGTTTGTCTCTTAAATAAGATAAACC
194 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* ** * *
3076833 TGAATTGTCATACTAATCCCAATTCTTTTCGGGATTGGGCAACATAAACATAGTC-T-T--TAAG
259 TGAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * * * *
3076894 GACACACGATATTGACGTTTTGGTTTCACAAGAAAAGCTTTCTTCCCACCAATTTTTGTAAAGTC
324 GATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTC
* * ** * *
3076959 TAAGTTCGTACCTCGAATGAGACAAACATGGGGTCCAGTAATGATCTTCATTCATTTTGTGATAA
389 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* **
3077024 GGCACTGTAAACACATTCTCCAC
454 GGCACTATAAACACATTCTCCTT
* * * * * * * * *
3077047 GTTAAGATAAATCATATTCATGATTTTCCCTGGCGTGCAAATCATTTCTTTGCCCTATCTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * * *
3077112 AAAATCAAAGTTCATCCCTTGAAAAAGACTAGCAACGATTCACATGACCGTCTCCACTCCTTTCA
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCA
* * *
3077177 AGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACAAGACATTGATGCTTTGGTCTTGCAA
131 AGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
* *
3077242 GAAAAGCATTTT-TTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAGATATGACAAACAT
196 GAAAAGC-TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * ** * * * * *
3077306 GAATAGTCATACTCATCCCAAGTCTCCTCAGGATTTGCCACCATAAACATATTATTCTCATAAGG
260 GAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* * *
3077371 ATACACGAAATTGACGCTTTGGGTTCGCAAGAAAGGCTTTCTTCCCA-TAAATTTTTGTAAAGTC
325 ATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACT-AATTTTTGTAAAGTC
* * ** ** * *
3077435 TAAGTTTGTGCCTGAAATGAGACAAATGTCAATTCTAGTAATGATCTTCACTCATTTTGTGATTT
389 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
*
3077500 GG--C------C-C--TAT-C--
454 GGCACTATAAACACATTCTCCTT
* * * * ** * *
3077509 ATTAGGCTAAATAATATTGATGATTTT-TTTTGCACGGAAATCTTTGCTCTGCCCTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * * * * *
3077573 AAAATCAAAATTCATCCCTTTAATATGAAAAACATCGATTCTCGTAATAGTTTCCA-TACATTTC
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACT-CTTTTC
* * * * *
3077637 AAGGTTGGGAACCAAGAACACATTCCCTTCATTAGGATATATGACATTGACGCTATGGTGTCGCA
130 AAGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* * * *
3077702 AGAAAAGCTTTTCTTTCCACCATTTTGGATAGAATCAAAGTTTATCACTTAAAT--G-----CAT
195 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * * *
3077760 GAGTAGTCATACGAATCTCAATTCTTTCCAAGATTAGGCAGCATAAACATAGTCATCTCATAAGG
260 GAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGG
** * ** * * * * * *
3077825 ATTGATGATATTGACACTTTGGTTTTGTAGGAAAGGCTTTCTTCCCGCTAATTTTTCTAAACTCT
325 ATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCT
* * * * * * **
3077890 AAGTTCATGCCTTAAATGAGAAAAACATGGATTCTAGTAATAATCATCATTTATTTCATGATTAG
390 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* * *
3077955 GCACAACAAACACATTCTCCTC
455 GCACTATAAACACATTCTCCTT
* * ** *
3077977 ATTAGGATAAATGATATTGATGACTTTCTCTAGCGTGAAAATCTTTTCTTTATCCAATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * *
3078042 AAAATCAAAGTTCATCCCTTGAAAAAGATAAGCATCGATTCTTGTGACAGTCTCCGCTCTGTTT-
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCT-TTTC
* ** * * * * * * ** *
3078106 AAGATTAGGAAATAAGAACACATTACTTTCCTTTGGATACAAGACATTAATGCCTTGGCCTTGCA
130 AAGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* *
3078171 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAAAAT
195 AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * *
3078236 GAATAGTCATAATAATCCTAATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAG
260 GAATAGTCATACTAATCCCAA-TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
* *
3078301 GATACACGATATTGACGCTTGGGTTT-GCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTC
324 GATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTC
* * * * * ** *
3078365 TAAGTTCATCCCTCAAACGAGACAAACATGGATTCTAGTAATAATCATCATTCATTTCATTATTA
389 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* *
3078430 GGCCCTATAAACACATTCTCCTC
454 GGCACTATAAACACATTCTCCTT
* * *
3078453 ATTAGGATAAATGATATTGATGACTTTCTCCAACGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * *
3078518 CAAATCAAAGTTCTTCCCTTGAAAAAGATAAGCAT-GAATTCTCGTGAA-AGTCTCCATTATTTT
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCG-ATTCTCGT-AACAGTCTCCACTCTTTT
* ** * * * * *
3078581 CAAGATTGGGAACAAAGAATGCATTCATTTCTTTAGGATACAAGACATTGATGC-TTGGTCTCTC
129 CAAGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
*
3078645 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATA-TTTGTCTCTTAAATAAGATAAAC
194 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA-AGTTTGTCTCTTAAATAAGACAAAC
* * *
3078709 ATGAATTGTCATACTAATCCCAATCCTTTTCGAGATTAGGCACCATAAACATAGTCTTCTCATAA
258 ATGAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAA
* * * * * *
3078774 GGATACATGAAATTGATACTTTGGTTTCGCAAGAAAGGTTTTTTTCCTACTAATTTTTGTAAAGT
323 GGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGT
* ** *
3078839 CTAAGTTCATGTATCAAATGAGACAAACATGGATTCTAGTAATGATCTTCTTTCATTTTGTGATT
388 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* *
3078904 TGGCACTATAAACATATTC-CACTT
453 AGGCACTATAAACACATTCTC-CTT
* * *
3078928 ATTAGGATAAATGATATTGATTATTTTCTCTAGCGTGGAAATCTTTTCTCTGCCCTATTTTCCAT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
**
3078993 AAAATCAAAGTTCATCCGC-TGAAAAAGACTTGCATCGATTCTCG-AGACAGTCTCCACTC-TTT
66 AAAATCAAAGTTCATCC-CTTGAAAAAGACAAGCATCGATTCTCGTA-ACAGTCTCCACTCTTTT
** * * * * * *
3079055 CAAGATTGGGAACCAAGAACATTTTTCATTCCTTA-GATATAAGACATTGATGCTTTGGTCTCGC
129 CAAGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* * * * * *
3079119 AAGAAAAGCTTTTCTTTCTATCGTTTCTAATAGAATCAAAGTTTGTCTCTTAAATATGACAAAAA
194 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * * * *
3079184 TGAATGGTCATAATAATCCCAATTCTTTTCAAGATTAGGCGCCATAAACATAGTCGTCTTATAAG
259 TGAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * ** *
3079249 GATACACGAGATTGATGCTTTGGTTTTGCAAGAAAAGCTTTCTTCCCACTAATTTTTGTATTGTT
324 GATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTC
* * * * *
3079314 TAAATTCATGTCAT-AAATGAGAGAAATATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
389 TAAGTTCGTG-CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* *
3079378 AGGTACTATAAACACATTCTCCTC
453 AGGCACTATAAACACATTCTCCTT
* ** *
3079402 ATTAGGATAAATGATATTGATGATTTTTTAGAGCATGGAAATCTTTTCTTTGCCCTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * *
3079467 AAAATCAAAGTTCA-CCCTTGAAAAAGACTAGCATCTATTCTCGTGATAGTCTCCACTTTTTTCG
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCA
* * * *
3079531 AGATTGGGAACCAAGAACACATTCCTTTCTTTAGGATACAAGACATTGATCCTTTGGTCTCGCAA
131 AGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
* * * *
3079596 GAAAAGCTTTTCTTTCCACCATTTTTCATAGAATCAAAATTTATCTCTTAAATAAGACAAACATG
196 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * *
3079661 AATAGTCATACTAATCCCCATTCTTTTCAAGATTCGGCACCATAAACATAGTCTTCTCGTAAGGA
261 AATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
* * * * * *
3079726 TACCCAAAATTGATGCTTTGGTTTCGCAAGAAAGG-TTCTCTTCCCAATAATATTTCTAAAGTCT
326 TACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTT-TCTTCCCACTAATTTTTGTAAAGTCT
* * * * *
3079790 AAGTTCATGCCTTAAATGAGACAAGCGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTTG
390 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
* *
3079855 GCACTATAAACACTTTCTCCCT
455 GCACTATAAACACATTCTCCTT
* * * * * * * *
3079877 ATTAGAATTAATGATATTGATGATTTCCTTTTGCATCGAAATCTTTTCTTTGCCTTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * * * *
3079942 AAAATCAAATTTCATCCCTTTAATATGAAAAACATCGATTTTCGTAACAGTCTCCACACTTTTCA
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCA
* *
3080007 AGATTGGGAACTAAGAACACATTCTCTTT-ATTAGGATACATGACATTGATGCTATGGTGTCAG-
131 AGATTGGGAACCAAGAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GC
* * * * *
3080070 AAGAAAAGCTTTTCCTTCCACCGCTTTGGGTAGAATCAAAGTTTGTCTCTTAAATAAGGCAAACA
194 AAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * *
3080135 TGTATAGTCATACCAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
259 TGAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAG
* * * * *
3080200 GATACCCGAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCTAAC-AATCTTTCTAAAGT
324 GATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCC-CACTAATTTTTGTAAAGT
* *
3080264 CTATGTTCGTGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
388 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* *
3080329 TGGCACTATAAACACTTTCTCCTT
453 AGGCACTATAAACACATTCTCCTT
* * * * * * * *
3080353 ATTAGAATTAATGATATCGATGATTTCCTTTTGCGTGGAAATCTTTTTTTTGCCTTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * *** * * * *
3080418 AAAATCAAATTTCATCACTTTAATGTGAAAAACATCGATTCTCGTAACAATCTCCACACTTTTCA
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCA
* *
3080483 AGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCTA
131 AGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
** ** * * * *
3080548 TTAAAGCTTTTCTTTCCATTGTTTTTGATCGAATGAAAGTTTGTCACTTAAATAAGATAAGA-AT
196 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA-ACAT
* * *
3080612 GAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
260 GAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* ** * * * * *
3080677 ATACATGATATTGACACTTTTGTTTCGCAAGAAAGGCTTTCTTCCCCCCAAATTTTGAAAAGTCT
325 ATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTC-
* * * * * * * *
3080742 TAA-ATCGTGCCTCCAATGGGACAAACATGGAATCTTGTAATGATTTTCATTTATTTCGTGATTA
389 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* *
3080806 GGCACTACAAACACATTCTCCTC
454 GGCACTATAAACACATTCTCCTT
* * * * * *
3080829 ATTCGGATAAATAATATT-ATTGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCT
1 ATTAGGATAAATGATATTGA-TGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCT
* * * * * *
3080893 TAAAATAAAAATTCATCCCCTT-AAATATGATAAGCATCGATTC-CTGTAATAGTCTCCATTCTT
65 TAAAATCAAAGTTCAT-CCCTTGAAA-AAGACAAGCATCGATTCTC-GTAACAGTCTCCACTCTT
* * * * * *
3080956 TTCAAGATTAGGAACCAAGAACACATTCGCTTT-ACTAGGGTACATGACATTAATACTTTAGTGT
127 TTCAAGATTGGGAACCAAGAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * * *
3081020 CGTAATAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTAGTCTCTCAAATAAGAGAA
191 CGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
*
3081085 A-ATGGAATAGTCATACTAATCCGC-ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
256 ACAT-GAATAGTCATACTAATCC-CAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
* * * * * * * *
3081148 ATAAAGATACCCAAAATTGATGCTTTGGTTTCGCAAGAAAAGCTTTCTTCCCAATAATATTTCTA
319 ATAAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTA
* * *
3081213 AAGTCTAAGTTCATGCCTTAAATGAGACAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGT
384 AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT
* * *
3081278 AATTTGGCACTATAAACACTTTCTCCTT
449 GATTAGGCACTATAAACACATTCTCCTT
* * * * * * * *
3081306 ATTAGAATTAATGATATTGATGATTTCCTTTTGCATGGAAATCTTTTCTTTTCCTTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * *
3081371 AAAATCAAA-TGTCATCCCCTT-AATATGA-AAACATCGATTTTCGTAACAGTCTCCACACTTTT
66 AAAATCAAAGT-TCAT-CCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTT
* * *
3081433 CAAGATTGGGAACTAAGAACACATTCTCTTT-ATTAGGATACATGACATTGACGCTATGGTGTCG
129 CAAGATTGGGAACCAAGAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * * * *
3081497 CAAGAAAAGCTTTTCCTTCCACCGTTTTGGGTAGAATCAAAGTTTGTCTTTTAATTAAGGCAAAC
193 CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * **
3081562 ATGTATAGTCATACCAATCCCCATTCTTTTCAAGATTAGGTGCCATAAACATAGTCTTCTCATAA
258 ATGAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAA
* * * * * *
3081627 GGATACTCGAAATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCTAATAATCTTTCTAAAGT
323 GGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGT
* * * *
3081692 CTAAGTTTGTGCCCCAAATGAGACAAACGTGGATTCTAGTAATGTTCTTCATTCATTTTGTGATT
388 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* *
3081757 TGGCACTATAAACACTTTCTCCTT
453 AGGCACTATAAACACATTCTCCTT
* * * * * * * * * *
3081781 ATTAGAATTAATGATATCGATGATTTCCTTTTGCGTGAAAATCTTTTTTTTACCTTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * *** * * * *
3081846 AAAATCAAATTTCATCCCTTTAATGTGAAAAACATCGATTCTCGTAACAATCTCCACACTTTTCA
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCA
** *
3081911 AGATTACGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
131 AGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
* ** * * *
3081976 TAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATGAAAGTTTGTCACTTAAATAAGATAAGA-AT
196 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA-ACAT
* ** * *
3082040 AAATAGTCATACTAATCCCCGTTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTCATAAGG
260 GAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGG
* ** * * * * * *
3082105 ATACATGATATTGACACTTTTGTTTCACAAGAAAGGCTTTCTTCCCCCCAAATTTTGAAAAGTCT
325 ATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCT
* * * * * * * * *
3082170 CAA-ATCGTGCCTCCAATTGGGATAAACATGGAATCTAGTAATGATTTTCTTTTATTTCGTGATT
390 -AAGTTCGTGCCT-CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* *
3082234 AGGCACTAGAAACACATTCTCCTC
453 AGGCACTATAAACACATTCTCCTT
* * * * * * * *
3082258 ATTCGAATAAATAATATTAATGATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * *
3082323 AAAATCAAAATTCATCCCCTT-AAATATGATAAGCATCGATTCCTC-TAATAGTCTCCATTCTTT
66 AAAATCAAAGTTCAT-CCCTTGAAA-AAGACAAGCATCGATT-CTCGTAACAGTCTCCACTCTTT
* * * * *
3082386 TCAAGATTAGGAACCAAGAACACATTCGCTTT-ACTAGGGTACATGACATTAATACTTTGGTGTC
128 TCAAGATTGGGAACCAAGAACACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTC
** * * * *
3082450 ATAATAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTAGTCT-TTCAAATAAGAGAA
192 GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT-AAATAAGACAA
* * * *
3082514 AAATGAATAGTCATAGTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
256 ACATGAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* * * *
3082579 AAGGATACTCGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTCTTCCTACT-ATTTTTCGTAA
321 AAGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTT-GTAA
* * * * * * *
3082643 AGTCTAAGTTCATACCTCAAATGAGACAAGCAAGAATTCTACTAATGATTTTCAATT-ATTTTGT
385 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTC-ATTCATTTTGT
* * *
3082707 GATTAAGCACTATAAACATA-T-T-CTA
449 GATTAGGCACTATAAACACATTCTCCTT
* * * * * * * ** *
3082732 ATTAAGATAAATGATATTGATAATTTTCTTTTGCATGCAAATATTTTCTTTGCCCCGTTTTCCAT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * * * * *
3082797 AAAATCAAAATTCATCACGT-AAATATGGCAAGTATTGATACTCGTGACAGTCTCCAC-CTTTTT
66 AAAATCAAAGTTCATCCCTTGAAA-AAGACAAGCATCGATTCTCGTAACAGTCTCCACTC-TTTT
* * * * *
3082860 CAAGAATAGGAACCATGAACACATTTCC-TTCATTAGGATAGATGACATTGATGCTTTGTTGTCG
129 CAAGATTGGGAACCAAGAACACA-TTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
* * * * *
3082924 CAAAAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTTTCTCAAATAAGGCAAAC
193 CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
*
3082989 ATGAATAGTCATACTAATCCCCATTC--TT-----TT--------TAAACATAGTCTTCTCATAA
258 ATGAATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAA
** * * * * *
3083039 ATATACACGATATCGATGCTTTGGTGTCACAAGAAAGGCTTTCTTCCCAATTATTTTTGTAAAGT
323 GGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGT
* * * **
3083104 CTAAGTTCATGCCTCAAATGAGACAAACAT-GAATCTAGT-A--ATCGTCATTCATTTCCTGATT
388 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* *
3083165 AGGTACTATAAACATATTCTCCTT
453 AGGCACTATAAACACATTCTCCTT
* ** *
3083189 GTTAGGATAAATGATATTGATGATTTTCTCTAGCACGGAAATCTTTTCTTTGACCTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
** * * * **
3083254 AAAATCAAAGTTCATCCCTCAAAAAAGACAAGCATTGATTTTCTTAATGGTCTCCACTCTTTT-A
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCA
* * * *
3083318 AGGATTGGCAACCAAGAACACATTCCCTTCATTGGGATACATGACATT-AGTG-TTATGGTGTCA
131 A-GATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTGA-TGCTT-TGGTGTCG
*
3083381 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAAT-AAAGTTTGTCTCTTAAATAAGACAAAC
193 CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* ** * * * *
3083445 ATGAAAAGTCATACTAATCCCCTTTCGTTTT-AGGATTAGGCACCGTGAACATAGTCTTCTTATA
258 ATGAATAGTCATACTAATCCCAATTC-TTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATA
* *** * * * * * *
3083509 AAGATACACGATATTGACATTTTAGTTTCACAAGAAAGGTTTTTTTCCCACCAATTTTTGTATAG
322 AGGATACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAG
* * * * *
3083574 TCTATG-TCTATGCCTCGAATGAGACAAACATGGATTCTAGTAATAATCGTCATTCATTTTGTGA
387 TCTAAGTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* * *
3083638 TTAGGCATTATAAACATATTCTCCTC
451 TTAGGCACTATAAACACATTCTCCTT
* * * * * * *
3083664 ATTAAGATAAATCATATTGTTGATTTTCTCTGGCATGGAAATCTTTTCTTTGACTTATTTTCCTT
1 ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * ** *
3083729 AAAAACAAAGTTCATTCCTT-AATATGACAAGCATCAATTCTCGTAATGGTCTCCACTCTTTCCA
66 AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCA
* * * *
3083793 AGATTAGGAACCAAGAACAAATTCCCTTCTTTAGGATACATGACATT
131 AGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATT
3083840 TGTTAGGATC
Statistics
Matches: 6570, Mismatches: 1032, Indels: 288
0.83 0.13 0.04
Matches are distributed among these distances:
453 3 0.00
454 182 0.03
455 2 0.00
456 60 0.01
457 182 0.03
458 101 0.02
459 9 0.00
460 5 0.00
461 175 0.03
462 23 0.00
463 3 0.00
464 1 0.00
465 4 0.00
466 3 0.00
467 1 0.00
468 25 0.00
469 170 0.03
470 6 0.00
471 102 0.02
472 407 0.06
473 224 0.03
474 609 0.09
475 1183 0.18
476 2000 0.30
477 662 0.10
478 262 0.04
479 8 0.00
480 4 0.00
481 1 0.00
482 1 0.00
484 152 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
ATTAGGATAAATGATATTGATGATTTTCTCTAGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTT
AAAATCAAAGTTCATCCCTTGAAAAAGACAAGCATCGATTCTCGTAACAGTCTCCACTCTTTTCA
AGATTGGGAACCAAGAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
AATAGTCATACTAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGA
TACACGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACTAATTTTTGTAAAGTCTA
AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
CACTATAAACACATTCTCCTT
Found at i:3084253 original size:13 final size:13
Alignment explanation
Indices: 3084235--3084282 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
3084225 CATGGTATAA
3084235 TGTATCGATACAT
1 TGTATCGATACAT
3084248 TGTATCGATACA-
1 TGTATCGATACAT
3084260 TG-AT-G--A-AT
1 TGTATCGATACAT
3084268 TGTATCGATACAT
1 TGTATCGATACAT
3084281 TG
1 TG
3084283 CTTGTAACGG
Statistics
Matches: 29, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
7 1 0.03
8 3 0.10
9 2 0.07
10 2 0.07
11 2 0.07
12 3 0.10
13 16 0.55
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3084259 original size:33 final size:33
Alignment explanation
Indices: 3084217--3084282 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
3084207 CCACTGTTTA
3084217 TATCGATACATGGTAT-AA-TGTATCGATACATTG
1 TATCGATACAT-G-ATGAATTGTATCGATACATTG
3084250 TATCGATACATGATGAATTGTATCGATACATTG
1 TATCGATACATGATGAATTGTATCGATACATTG
3084283 CTTGTAACGG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
31 2 0.06
32 3 0.10
33 26 0.84
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (33 bp):
TATCGATACATGATGAATTGTATCGATACATTG
Found at i:3090456 original size:13 final size:13
Alignment explanation
Indices: 3090438--3090477 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
3090428 ACAACATTCC
*
3090438 TTGTATCGATATA
1 TTGTATCGATACA
3090451 TTGTATCGATACA
1 TTGTATCGATACA
3090464 TTGTATCGATACA
1 TTGTATCGATACA
3090477 T
1 T
3090478 GGGTTACTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3094203 original size:477 final size:476
Alignment explanation
Indices: 3093307--3095203 Score: 2007
Period size: 477 Copynumber: 4.0 Consensus size: 476
3093297 CGCAAGATAG
* ** * ** *
3093307 GTTTATAGTGCCTAAACGTAAAATGAAT-AAAGATCCCTT-CTAGAATCCATGTTTGTCTTATTT
1 GTTTATAGTGCCTAATCACAAAATGAATGAAA-AT-CATTACTAGAATCTGTGTTTGTCTCATTT
** * *
3093370 GAGGCATGAACTTAGACTTTACAAAAATTACTGGG-AAAAGAGCCTTTCTTACAAAACCAAAG-A
64 GAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAG-GCCTTTCTTGCGAAACCAAAGCA
* * * * *
3093433 ATCAATATTATGTATCCTTAT-ATGAAGACTATGTTTATGGTGCCTAATCC-AGAAAGGATGGGG
128 TTCAATATTATGTATCCTAATGA-GAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGG
* * * * * * *
3093496 GATTAGCATGACTATTCA-AGCTTGTCTTATTTACGAGACAAACTTTGATTCTATTAAGAATGGT
192 G-TTAGCATGAGTATTCATA-TTTGTCTAACTTAAGAGACAAACTTTGATTCTATCAAGAACGGT
* * *
3093560 GGAAAGAAAACCTTTTCTTGCTATACCAAAGCATCAATGTCATGTATCCTAGTGAATA-GAATGT
255 GGAAAGAAAACCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAA-AGGAATGT
* * * * * * * *
3093624 ATTCTTGGTTCCCAATCTTGAAAAAAAATGGAGATTGTCACGAGAATCAATGCTTGTCTTATTTA
319 GTTATTGGTTCCCAATCTTG-AAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTA
*
3093689 AGGGATGAATTTTTATTTTAAGGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCGT
383 AGGGATGAATTTTTATTTTAA-GGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCAT
*
3093754 CAATATCATTTATCCTAATGAGAAGATTGT
447 CAATATCATTTATCCTAATGAGAAGAATGT
* *
3093784 GCTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCTGTGCTTGTCTCATTTGA
1 GTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCTGTGTTTGTCTCATTTGA
* * * *
3093849 GGTATGAACTTACACTTTACAAAAATTGGTGGGAAGAAA-GCCTTTCTTGTGAAACTAAAGC-TT
66 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGGCCTTTCTTGCGAAACCAAAGCATT
* * * * * * * *
3093912 CATTATCATCTATGCTAATGAGAACACTATGTTTATGGTACCTAATCTTGAAAAGAAT-GGGGAT
130 CAATATTATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGG-T
* * * * * * **
3093976 TAGTATGAGTATTCATATTTATCTTATTTAGGAGACGAACTTTGATTCTATC-AGAAACAATGGA
194 TAGCATGAGTATTCATATTTGTCTAACTTAAGAGACAAACTTTGATTCTATCAAG-AACGGTGGA
* * ** *
3094040 AAAAAAACTTTTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATCAAAGGAATTGTGTT
258 AAGAAAACCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAA-TGTGTT
* *
3094105 ATTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATC-ATTGCTGGCCTTATTTAAGG
322 ATTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGA-TGCTTGTCTTATTTAAGG
* * * * * ** *
3094169 GATAAACTTTGATTTCATGGAAAGTAGGGCAAAGAAAAGATTTTTATAG-AAAAGAAAGTCATCA
386 GATGAATTTTTATTTTAAGGAAA-TAGGGCAAAGAAAAGATTTCCAT-GCAAAAGAAAATCATCA
* * *
3094233 ATGTTATTTATCC-AATTGAGGAGAATGT
449 ATATCATTTATCCTAA-TGAGAAGAATGT
* *
3094261 GTTTATAGTGCCTAATCA-TAAAT---TG---A--ATGA--AGAA-------------CATTTGA
1 GTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCTGTGTTTGTCTCATTTGA
* * * *
3094302 GGCATGAACTTAGAATTTACAAAAATTGGTGTGAAAAATGCTTTTCTTGCGAAACCAAAGCATT-
66 GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCGAAACCAAAGCATTC
* * * * * * * *
3094366 AATTTTGTGTATCCTTATGAGAAGACTATGCTTATGCTGCCTCATCCTAAAAAGAGTATGGGTTA
131 AATATTATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGGTTA
* * *
3094431 GCATGAGTATTCATATTTGTCTAACTTAAGAGACATACCTTGATTTTATCAAGAACGGTGGAAAG
196 GCATGAGTATTCATATTTGTCTAACTTAAGAGACAAACTTTGATTCTATCAAGAACGGTGGAAAG
*
3094496 AAAACCTTTTCTTGCAACACCAAAGCATGAATGTCATGTATCCTAATG-AAGTGAATGTGTTATT
261 AAAACCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTATT
* * * *
3094560 GGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACAAGAATCGATGCTTTTCATATTTAAGGGATG
325 GGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGGATG
* *
3094625 AATTTTTATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCGTCAATATC
390 AATTTTTATTTTAAGG-AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
* *
3094690 ATTTATCCTAAAGAGGAGAATGT
454 ATTTATCCTAATGAGAAGAATGT
* * * * * * *
3094713 GTTTATAGTGCCTTAA-CACAAAATGATTGAAGATCCTTTCTAGAATCTGGGTTTGTCTTATTCG
1 GTTTATAGTGCC-TAATCACAAAATGAATGAAAATCATTACTAGAATCTGTGTTTGTCTCATTTG
* * * * *
3094777 ATGTATGAACTTAAACTTTAC-AAATTTGGTGGGAAAAAGGCCTTTCTTGTGAAACCAAAGCATT
65 AGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCGAAACCAAAGCATT
* * *
3094841 -AATATTATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCGTAAAAAGAATATGGGTT
130 CAATATTATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGGTT
* * *
3094905 AGTATTAGTATTCATATTTGTCTAACTTAAGAGACAAACTTTGATTCTTTCTAA-AACGGTGGAA
195 AGCATGAGTATTCATATTTGTCTAACTTAAGAGACAAACTTTGATTCTATC-AAGAACGGTGGAA
* * *
3094969 AGAAAACCTTTTCTTGCAACACCAAAGCATCAAAGTCATGTATCCTAAAGAAGGGAATGTGTTAT
259 AGAAAACCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTAT
* * * * * **
3095034 TGGTTCCCAATCTTGAATAGAATGAAGACTATTACGAGAATCGATGCTTAT-TATTTTTAAATGA
324 TGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCT-TATTTAAGGGA
* * * * *
3095098 TGAATTTTCATTTTAAGGAAATAAGGCAAAAAAAAGCTTTCCATGCAAAAGAAAATCATCAATAA
388 TGAATTTTTATTTTAAGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* *
3095163 CATGTATCCTAATAAGAAGACAT-T
453 CATTTATCCTAATGAGAAGA-ATGT
* *
3095187 GTTTGTGGTGCCTAATC
1 GTTTATAGTGCCTAATC
3095204 CTGAAAAGAA
Statistics
Matches: 1181, Mismatches: 185, Indels: 111
0.80 0.13 0.08
Matches are distributed among these distances:
451 1 0.00
452 154 0.13
453 211 0.18
454 7 0.01
456 2 0.00
459 1 0.00
461 1 0.00
463 4 0.00
466 4 0.00
468 3 0.00
470 1 0.00
473 5 0.00
474 69 0.06
475 278 0.24
476 43 0.04
477 360 0.30
478 34 0.03
479 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (476 bp):
GTTTATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCTGTGTTTGTCTCATTTGA
GGCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCTTGCGAAACCAAAGCATTC
AATATTATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGGTTA
GCATGAGTATTCATATTTGTCTAACTTAAGAGACAAACTTTGATTCTATCAAGAACGGTGGAAAG
AAAACCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTATTG
GTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTTATTTAAGGGATGA
ATTTTTATTTTAAGGAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
TTATCCTAATGAGAAGAATGT
Found at i:3095269 original size:317 final size:316
Alignment explanation
Indices: 3094847--3095633 Score: 954
Period size: 317 Copynumber: 2.5 Consensus size: 316
3094837 CATTAATATT
* * * *
3094847 ATGTATCCTAATGAGAAGACAATGTTTATGGTGCCTAATCGTAAAAAGAATATGGG-TTAGTATT
1 ATGTATCCTAATGAGAAGACATTGTTTATGGTGCCTAATCCTGAAAAGAATA-GGGATTAGTATG
* * * * *
3094911 AGTATTCATATTTGTCTAACTTAAGAGACAAACTTTGATTCTTTCTAAAACGGTGGAAAGAAAAC
65 AGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAACGGTGGAAAGAAAAC
* * * *
3094976 CTTTTCTTGCAACACCAAAGCATCAAAGTCATGTATCCTAAAGAAGGGAATGTGTTATTGGTTCC
129 CTTTTCTTGCGACACCAAAGCATCAAAGCCAGGTATCCTAAACAAGGGAATGTGTTATTGGTTCC
* * * * * *
3095041 CAATCTTGAATAGAATGAAGACTATTACGAGAATCGATGCT-TATTATTTTTAAATGATGAATTT
194 CAATCTTGAAAAGAATGAAGACTATTACGAGAATCAATGCTGCATTA--TTTAAAGGATAAACTT
* *
3095105 TCATTTTAAGGAAA-TAAGGCAAAAAAAAGCTTTCCATGCAAAAGAAAATCATCAATAAC
257 TCATTTTAAGCAAAGTAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATAAC
* * *
3095164 ATGTATCCTAATAAGAAGACATTGTTTGTGGTGCCTAATCCTGAAAAGAATAGGGACTAGTATGA
1 ATGTATCCTAATGAGAAGACATTGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGA
* ** * *
3095229 GTATTAATGTTTGTCTTATTTAAGAGACAAACTGTGATTCTATCAATAACAATAGAAAGAAAAGC
66 GTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA-AACGGTGGAAAGAAAACC
* * * * * *
3095294 TTCTCTTGTGACACCAAAGCATCAATGCCAGGTATCCTAATCAGGGGAATGTGTTTTTGGTTCCC
130 TTTTCTTGCGACACCAAAGCATCAAAGCCAGGTATCCTAAACAAGGGAATGTGTTATTGGTTCCC
* * * * * * *
3095359 AATCTTGAAAAGATTGGAGACTGTTACGAGAATTAATGCTGGCCTTATTTAAGGGATAAACTTTG
195 AATCTTGAAAAGAATGAAGACTATTACGAGAATCAATGCT-GCATTATTTAAAGGATAAACTTTC
* * * *
3095424 ATTTTAAGCAAAGTAAGGCAAAGAAAATATTTCCATGCAAAAGAAAATCCTCAATATC
259 ATTTTAAGCAAAGTAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATAAC
* * * *
3095482 ATGTATTCTAATGAGAAGAC-TATGTTTATGGAGCATAATCCAGAAAAGAAT-GGGAATTAGTAT
1 ATGTATCCTAATGAGAAGACAT-TGTTTATGGTGCCTAATCCTGAAAAGAATAGGG-ATTAGTAT
* * * * *
3095545 GACTATTTATGCTTGTCTTATTTAAGAGACAAACTTTGATTCTACCAAAAAAGGTGGAAAGAAAA
64 GAGTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAACGGTGGAAAGAAAA
*
3095610 CCTTTTCTTGCGACACTAAAGCAT
128 CCTTTTCTTGCGACACCAAAGCAT
3095634 ATTTAAGGGA
Statistics
Matches: 396, Mismatches: 66, Indels: 15
0.83 0.14 0.03
Matches are distributed among these distances:
316 5 0.01
317 223 0.56
318 163 0.41
319 5 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (316 bp):
ATGTATCCTAATGAGAAGACATTGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGA
GTATTAATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGAAAACCT
TTTCTTGCGACACCAAAGCATCAAAGCCAGGTATCCTAAACAAGGGAATGTGTTATTGGTTCCCA
ATCTTGAAAAGAATGAAGACTATTACGAGAATCAATGCTGCATTATTTAAAGGATAAACTTTCAT
TTTAAGCAAAGTAAGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATAAC
Found at i:3097566 original size:451 final size:452
Alignment explanation
Indices: 3096468--3098083 Score: 1649
Period size: 451 Copynumber: 3.5 Consensus size: 452
3096458 GAGGACATTA
* * * *
3096468 CATGTTTGTCTTATTTAAGTGAAAAACTTTGATTTTATAAAAACCGGTGGAAAGAAAACCTTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAG-AAACCTTTTC
* * * * * * *
3096533 TTGTGACATCAAAGCATCAATGTCATGTATCCTAATCAAAGGAATGTGTTTTTGGTTCCCAATCT
65 TTGCGACACCAAAGCATCAAAGTCATGTATCATAATGAAGGGAATGTGTTATTGGTTCCCAATCT
* * * * * * *
3096598 T-AAAAGGAATGGA-AGCTGTTACGAGAATCAATGCTTG-CGTTATTTAAGGGA-CAAACTTTGA
130 TGAAAA-GAATAGAGA-CTGTCACGAGAATCGATGCTTGTC-ATA-TTAAAGGATGAAA-TTTTA
* *
3096659 TTTTAAGGAAAATAGGGCAAGAAAAGATTTCCAGGCAAAA-AGAAATTATCAATATCATTTATCC
190 TTTT--------TA--G---GAAAA-A-----AGG-AAAAGA-AAATCATCAATATCATTTATCA
* * * * * * * *
3096723 CAATGAGGAGAATATGTTTACAGTGCCTAAACACAAAATGAATGAAGATCCTTTCTAGAATCCAT
234 TAATGAGGAGAATGTGTTTATAGCGCCTAATCATAAAATGAATGAAGATCATTGCTAGAATCCAT
* * * * *
3096788 GTTTGTCTCATTTGAGGTAGGAAA-TTAGACTTTACAAAAATTGATGGGAAAAAATCCTTTCTTG
299 GTTTGTCTCATTTGAGGCA-CAAACTTACACTTTAC-AAAATTGATGGGAAGAAAGCCTTTCTTG
* * * * *
3096852 TGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCGTAATCCTAA
362 CGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
*
3096917 AAAGAATGGGGATTAGTATGACTGTT
427 AAAGAATGGGGATTAGTATGACTATT
* * * * * *
3096943 CATGCTTGTCTTATTTAAGAGACAAACATTGATTGTATCAAGAACGGTGGAAAAAAAACCTTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGG-AAAGAAACCTTTTC
* * * * **
3097008 TTGTGACATCAAAGCATCAATGTCATGTATCATAATGAAGGAAATGTGTTCGTGGTTCCCAATCT
65 TTGCGACACCAAAGCATCAAAGTCATGTATCATAATGAAGGGAATGTGTTATTGGTTCCCAATCT
* *
3097073 TGAAAAGAATAGAAACTGTCACGAGAATCGATGCTTGTCATATATAAAGGATGAATTTTTATTTT
130 TGAAAAGAATAGAGACTGTCACGAGAATCGATGCTTGTCATAT-TAAAGGATGAAATTTTATTTT
*
3097138 TAGGAAAAAAGGTAAAGAAAATCATC-A-AT-A-TTATCATAATGAGGAGAATGTGTTTATAGCG
194 TAGGAAAAAAGGAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGCG
**
3097199 CCTAATCATGGAATGAATGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCACAAACT
259 CCTAATCATAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCACAAACT
*
3097264 TACACTTTACAAAATTTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTA
324 TACACTTTACAAAA-TTGATGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTA
* * * * * *
3097329 TCCTAAT-AGGAAGACTATGTTTATGGTGCCTTATCCTGAAAATAGTGTGGTTTAGTATGGCTAT
388 TCCTAATGA-GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
3097393 T
452 T
* * * * *
3097394 CATGTTTATCTTATTTAAGAGAAAAACTTT-AGTTCTATTAAAAACAGTGGAAAGAAGACCTTCT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATAAAAAACGGTGGAAAGAA-ACCTTTT
* * *
3097458 CTTGCGACACCAAAGCATCAAAGTCATGTATCTTAAAGAAGGGAATGTGTTATTGGTTCCTAATC
64 CTTGCGACACCAAAGCATCAAAGTCATGTATCATAATGAAGGGAATGTGTTATTGGTTCCCAATC
* * * *
3097523 TTGAAAAGAATAGAGAGTGTCACGAGAATCAATGCTTGTCATATTTAAGGTATGAACTTTTATTT
129 TTGAAAAGAATAGAGACTGTCACGAGAATCGATGCTTGTCATATTAAAGG-ATGAAATTTTATTT
*
3097588 TGAGGAAAATAGGGTAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAA
193 T--------TA-GG--AA-AAAAG--------G-AAAAGAAAATCATCAATATCATTTATCATAA
* * *
3097653 TGAGGAAAATGTGTTTATAGCGCCTAATCTTAAAATGAATGAAGATCATTGCTAGAATCCGTGTT
237 TGAGGAGAATGTGTTTATAGCGCCTAATCATAAAATGAATGAAGATCATTGCTAGAATCCATGTT
* ** * * * *
3097718 TGTCTCACTTGAGGCATGAACTTATACTTTACAAAGATTGATGGGAAGATAGCTTTTCTTACGAA
302 TGTCTCATTTGAGGCACAAACTTACACTTTACAAA-ATTGATGGGAAGAAAGCCTTTCTTGCGAA
*** * *
3097783 ACCAAAATGTTAATATCGTCTATCCTAATGAGACA-ACTATATTTATGGTGCCTAATCCTGAAAA
366 ACCAAAGCATCAATATCGTCTATCCTAATGAGA-AGACTATGTTTATGGTGCCTAATCCTGAAAA
3097847 GAATGGGGATTAGTATGACTATT
430 GAATGGGGATTAGTATGACTATT
* * * *
3097870 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTACAAAAAATGGTGGAAAGAAAACTTTTCT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAACCTTTTCT
* *
3097935 T-CGACACTAAAGCATCAAAGTCATGTATCCTAATGAAGGGAATGTGTTATTGGTTCCCAATCTT
66 TGCGACACCAAAGCATCAAAGTCATGTATCATAATGAAGGGAATGTGTTATTGGTTCCCAATCTT
* * * * * *
3097999 GAAAATAATAGAGACTGTTACGAGAATCGTTGCCTGTCATATTTAAGGGATGAAATTTTATTTTG
131 GAAAAGAATAGAGACTGTCACGAGAATCGATGCTTGTCATA-TTAAAGGATGAAATTTTATTTTT
*
3098064 AGGAAAATAAGGCAAAGAAA
195 AGGAAAA-AAGGAAAAGAAA
3098084 TGATTTCCAT
Statistics
Matches: 969, Mismatches: 128, Indels: 109
0.80 0.11 0.09
Matches are distributed among these distances:
450 19 0.02
451 343 0.35
452 1 0.00
453 2 0.00
454 8 0.01
455 11 0.01
456 4 0.00
459 2 0.00
460 2 0.00
461 1 0.00
462 9 0.01
463 10 0.01
465 3 0.00
466 1 0.00
467 2 0.00
471 1 0.00
472 13 0.01
473 1 0.00
474 111 0.11
475 168 0.17
476 253 0.26
477 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (452 bp):
CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAACCTTTTCT
TGCGACACCAAAGCATCAAAGTCATGTATCATAATGAAGGGAATGTGTTATTGGTTCCCAATCTT
GAAAAGAATAGAGACTGTCACGAGAATCGATGCTTGTCATATTAAAGGATGAAATTTTATTTTTA
GGAAAAAAGGAAAAGAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGCGCC
TAATCATAAAATGAATGAAGATCATTGCTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTA
CACTTTACAAAATTGATGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTATCC
TAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
Found at i:3098505 original size:13 final size:13
Alignment explanation
Indices: 3098487--3098512 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3098477 TACAGCAAGT
3098487 ATGTATCGATACA
1 ATGTATCGATACA
3098500 ATGTATCGATACA
1 ATGTATCGATACA
3098513 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3100763 original size:21 final size:21
Alignment explanation
Indices: 3100730--3100774 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3100720 TTGCAAGTTG
*
3100730 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
3100752 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
3100772 AAA
1 AAA
3100775 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:3102598 original size:15 final size:15
Alignment explanation
Indices: 3102578--3102608 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3102568 TAAAAATGTC
*
3102578 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
3102593 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
3102608 C
1 C
3102609 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:3104701 original size:20 final size:20
Alignment explanation
Indices: 3104622--3104701 Score: 88
Period size: 20 Copynumber: 3.8 Consensus size: 20
3104612 AATGTCCAAA
*
3104622 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATTTTTCT
*
3104642 ATGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACAT-T----TTTCT
3104667 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
3104687 TTGTATCGATACATT
1 ATGTATCGATACATT
3104702 GTATCGATAC
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
20 32 0.63
24 1 0.02
25 18 0.35
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:3104705 original size:13 final size:13
Alignment explanation
Indices: 3104687--3104725 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
3104677 ACATTTTTCT
3104687 TTGTATCGATACA
1 TTGTATCGATACA
3104700 TTGTATCGATACA
1 TTGTATCGATACA
3104713 TTGTATCGATACA
1 TTGTATCGATACA
3104726 GGGTGATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3104870 original size:21 final size:21
Alignment explanation
Indices: 3104846--3104892 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
3104836 AAATCTTTTG
3104846 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
3104867 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
3104887 CAAAAT
1 CAAAAT
3104893 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:3104889 original size:20 final size:19
Alignment explanation
Indices: 3104848--3104890 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
3104838 ATCTTTTGCA
3104848 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
3104868 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
3104888 AAA
1 AAA
3104891 ATCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:3107292 original size:13 final size:13
Alignment explanation
Indices: 3107274--3107299 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3107264 TACAGCAAGT
3107274 ATGTATCGATACA
1 ATGTATCGATACA
3107287 ATGTATCGATACA
1 ATGTATCGATACA
3107300 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3108715 original size:57 final size:57
Alignment explanation
Indices: 3108625--3108740 Score: 187
Period size: 57 Copynumber: 2.0 Consensus size: 57
3108615 CCGAATTTGG
* * *
3108625 TGGATTTTATGCTTAATTTGCTGCCACCGAAGCTTTTTTGGTGTCATTGCATTGCAT
1 TGGATTTCATGCTTAATTTGCTGCCACCGAAGCTTTCTAGGTGTCATTGCATTGCAT
* *
3108682 TGGATTTCATGTTTAATTTGCTGCCACCTAAGCTTTCTAGGTGTCATTGCATTGCAT
1 TGGATTTCATGCTTAATTTGCTGCCACCGAAGCTTTCTAGGTGTCATTGCATTGCAT
3108739 TG
1 TG
3108741 CATGCAAGCT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (57 bp):
TGGATTTCATGCTTAATTTGCTGCCACCGAAGCTTTCTAGGTGTCATTGCATTGCAT
Found at i:3108941 original size:12 final size:12
Alignment explanation
Indices: 3108912--3108951 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
3108902 AAATCATACA
3108912 TTTCATGCATGC
1 TTTCATGCATGC
3108924 -TTCATGCATGC
1 TTTCATGCATGC
*
3108935 TTTCATGCATGT
1 TTTCATGCATGC
3108947 TTTCA
1 TTTCA
3108952 CACATGTACA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 11 0.42
12 15 0.58
ACGTcount: A:0.17, C:0.23, G:0.15, T:0.45
Consensus pattern (12 bp):
TTTCATGCATGC
Found at i:3115336 original size:155 final size:153
Alignment explanation
Indices: 3114854--3115445 Score: 518
Period size: 154 Copynumber: 3.8 Consensus size: 153
3114844 TGATTCTTAA
** * * * * **
3114854 GTTGTCACCGGGTCCGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATCTGTAA-
1 GTTGTCACTAGGTCTGCTTTTATGCCAAAAGTGGGTATTTAGGATAGGTTCAT-CCATTTAAAAT
* * * * * **
3114918 CC-TTTTTAGGTCCTTTAGGGGCATCGAGCACTTTTGA-GTTGAAGGTATCCTTTA-AGGGCATT
65 CCTTTTTTA-GTCTTTTAGGGGTATTG-GTACTTTT-ACGTCGAAGGTATCCCCTAGA-GGCATT
** ** * * * *
3114980 TTTGTAATTTTTTAGAACCGATTCTTAG
126 TTCATAATTTTCCAAAACCAACTCCTAG
* * *
3115008 GTTGTCACCAGGTTTGCTTTTATGCCAAAGGTGGGTATTTAGGATAGGTTCATCCCATTTAAAAT
1 GTTGTCACTAGGTCTGCTTTTATGCCAAAAGTGGGTATTTAGGATAGGTTCAT-CCATTTAAAAT
* * * *
3115073 -CTTTTTTAAGTCCTTTAAGGGTATTGGTACTTTTACGTCGAAGGTATCTCCTAGATGCATTTTC
65 CCTTTTTT-AGTCTTTTAGGGGTATTGGTACTTTTACGTCGAAGGTATCCCCTAGAGGCATTTTC
*
3115137 GTAATTTTCCAAAACCAACTCCTAG
129 ATAATTTTCCAAAACCAACTCCTAG
** * * * * * *
3115162 GTCATC-GTCGGGTCCGCTTTTATGTCAAAAGTGGGTATTTAGGATAGGTTTATCCTTTTTAAAA
1 GTTGTCACT-AGGTCTGCTTTTATGCCAAAAGTGGGTATTTAGGATAGGTTCATCC-ATTTAAAA
* *
3115226 TCCTTTTTTAGTCTTTTAGGGGTATTGGGTACTTTTACGTCGAAGGTTTCCCCTAGAGGTATCTT
64 TCCTTTTTTAGTCTTTTAGGGGTATT-GGTACTTTTACGTCGAAGGTATCCCCTAGAGGCAT-TT
*
3115291 T-ATAA-TTTCCTAAAACTAACTCCTAG
127 TCATAATTTTCC-AAAACCAACTCCTAG
* * * * *
3115317 GTTGTCACTAGGTCTGCTTTTATGCCGAAAGTGGGTATTTATGATAAGTTCATTCCATCTATAAT
1 GTTGTCACTAGGTCTGCTTTTATGCCAAAAGTGGGTATTTAGGATAGGTTCA-TCCATTTAAAAT
* ** * *
3115382 CCTTTCTTAGTCTTTTAGGGGTATCAAGTACTTTTACGTTGAAGGTATCCCTTA-AGGGCATTTT
65 CCTTTTTTAGTCTTTTAGGGGTAT-TGGTACTTTTACGTCGAAGGTATCCCCTAGA-GGCATTTT
3115446 TGTAATTTCA
Statistics
Matches: 361, Mismatches: 62, Indels: 30
0.80 0.14 0.07
Matches are distributed among these distances:
153 3 0.01
154 178 0.49
155 172 0.48
156 8 0.02
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.39
Consensus pattern (153 bp):
GTTGTCACTAGGTCTGCTTTTATGCCAAAAGTGGGTATTTAGGATAGGTTCATCCATTTAAAATC
CTTTTTTAGTCTTTTAGGGGTATTGGTACTTTTACGTCGAAGGTATCCCCTAGAGGCATTTTCAT
AATTTTCCAAAACCAACTCCTAG
Found at i:3115452 original size:155 final size:155
Alignment explanation
Indices: 3114854--3115454 Score: 601
Period size: 155 Copynumber: 3.9 Consensus size: 155
3114844 TGATTCTTAA
* * **
3114854 GTTGTCACCGGGTCCGCTTTTATGCCGAAGGTGGGTATTTAGGATAGGTTCATCCCATCTGTAA-
1 GTTGTCACCAGGTCCGCTTTTATGCCGAAAGTGGGTATTTAGGATAGGTTCATCCCATCTAAAAT
* * * *
3114918 CC-TTTTTAGGTCCTTTAGGGGCATCGAGCACTTTTGA-GTTGAAGGTATCCTTTA-AGGGCATT
66 CCTTTTTTA-GTCCTTTAGGGGTATCGAGTACTTTT-ACGTCGAAGGTATCCCTTAGA-GGCATT
** * * * *
3114980 TTTGTAATTTTTTAGAACCGATTCTTAG
128 TTTGTAATTTCCTAAAACCAACTCCTAG
** *
3115008 GTTGTCACCAGGTTTGCTTTTATGCC-AAAGGTGGGTATTTAGGATAGGTTCATCCCATTTAAAA
1 GTTGTCACCAGGTCCGCTTTTATGCCGAAA-GTGGGTATTTAGGATAGGTTCATCCCATCTAAAA
* * *
3115072 T-CTTTTTTAAGTCCTTTAAGGGTATTG-GTACTTTTACGTCGAAGGTATCTCC-TAGATGCATT
65 TCCTTTTTT-AGTCCTTTAGGGGTATCGAGTACTTTTACGTCGAAGGTATC-CCTTAGAGGCATT
*
3115134 TTCGTAATTTTCC-AAAACCAACTCCTAG
128 TTTGTAA-TTTCCTAAAACCAACTCCTAG
** ** * * * * ** *
3115162 GTCATCGTCGGGTCCGCTTTTATGTCAAAAGTGGGTATTTAGGATAGGTTTATCCTTTTTAAAAT
1 GTTGTCACCAGGTCCGCTTTTATGCCGAAAGTGGGTATTTAGGATAGGTTCATCCCATCTAAAAT
* * * * * * *
3115227 CCTTTTTTAGTCTTTTAGGGGTATTGGGTACTTTTACGTCGAAGGTTTCCCCTAGAGGTATCTTT
66 CCTTTTTTAGTCCTTTAGGGGTATCGAGTACTTTTACGTCGAAGGTATCCCTTAGAGGCATTTTT
* *
3115292 ATAATTTCCTAAAACTAACTCCTAG
131 GTAATTTCCTAAAACCAACTCCTAG
* * * * * *
3115317 GTTGTCACTAGGTCTGCTTTTATGCCGAAAGTGGGTATTTATGATAAGTTCATTCCATCTATAAT
1 GTTGTCACCAGGTCCGCTTTTATGCCGAAAGTGGGTATTTAGGATAGGTTCATCCCATCTAAAAT
* * * *
3115382 CCTTTCTTAGTCTTTTAGGGGTATCAAGTACTTTTACGTTGAAGGTATCCCTTA-AGGGCATTTT
66 CCTTTTTTAGTCCTTTAGGGGTATCGAGTACTTTTACGTCGAAGGTATCCCTTAGA-GGCATTTT
3115446 TGTAATTTC
130 TGTAATTTC
3115455 AAGAATCGAG
Statistics
Matches: 365, Mismatches: 68, Indels: 27
0.79 0.15 0.06
Matches are distributed among these distances:
153 3 0.01
154 171 0.47
155 190 0.52
156 1 0.00
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.40
Consensus pattern (155 bp):
GTTGTCACCAGGTCCGCTTTTATGCCGAAAGTGGGTATTTAGGATAGGTTCATCCCATCTAAAAT
CCTTTTTTAGTCCTTTAGGGGTATCGAGTACTTTTACGTCGAAGGTATCCCTTAGAGGCATTTTT
GTAATTTCCTAAAACCAACTCCTAG
Found at i:3119089 original size:157 final size:159
Alignment explanation
Indices: 3118854--3119181 Score: 396
Period size: 157 Copynumber: 2.1 Consensus size: 159
3118844 AATATAAAAG
* * * ** * *
3118854 ATTAAAATTTTTTCTCGAAAATATTAATTCAACTTAATTTTATTTATTTTTGAACACATAATTTT
1 ATTAAAA-TTTATCCCGAAAATATTAATTCAACTTAATTTTATTTATGTTCAAACAAACAATTTT
* * ****
3118919 GTACCCTAGTGGAAGC-CCGAAAGGATATGGAATGTTTTTTTAAAATC-TTTATACCCCTACAGA
65 GTACCCTAATGGAAGCTCC-AAAGGATA-CGAA-ACAATTTTAAAATCTTTTATACCCCTACAGA
*
3118982 TGCCCGTAGGAATATAAAAGATTAGA-AAAA-A
127 TGCCCATAGGAATATAAAAGATTAGACAAAATA
* * * *
3119013 ATT-AAATTTATCCCGAAAGTATTAGTTCAATTTAATTTTATTTATGTTCAAACAAACCATTTTG
1 ATTAAAATTTATCCCGAAAATATTAATTCAACTTAATTTTATTTATGTTCAAACAAACAATTTTG
* *
3119077 TACCCTAATGGAAGCTTCAAAGGATACGAAACAATTTTGAAATCTTTTATACCCCTACAGATGCC
66 TACCCTAATGGAAGCTCCAAAGGATACGAAACAATTTTAAAATCTTTTATACCCCTACAGATGCC
*
3119142 CATAGGAATATAACAGATTAGACAAAATA
131 CATAGGAATATAAAAGATTAGACAAAATA
3119171 ATTAAAATTTA
1 ATTAAAATTTA
3119182 ATTTTATCAC
Statistics
Matches: 143, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
155 9 0.06
156 43 0.30
157 73 0.51
158 8 0.06
159 10 0.07
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (159 bp):
ATTAAAATTTATCCCGAAAATATTAATTCAACTTAATTTTATTTATGTTCAAACAAACAATTTTG
TACCCTAATGGAAGCTCCAAAGGATACGAAACAATTTTAAAATCTTTTATACCCCTACAGATGCC
CATAGGAATATAAAAGATTAGACAAAATA
Found at i:3124142 original size:165 final size:164
Alignment explanation
Indices: 3123788--3124158 Score: 482
Period size: 164 Copynumber: 2.3 Consensus size: 164
3123778 TTTTTTTGAA
* *
3123788 GGGATTTTTGTTAGTTTATAAA-TTTTAAAATTCATCAAATATTATTATTTAATCACCATTAATC
1 GGGATTTTTCTTAGTTTA-AAATTTTTAAAATTCATCAAATATCATTATTTAATCACCATTAATC
* *
3123852 ATTTTTGAAAAATTTACCTATTTTCATGAGTTTTTCATTTTTTCCTTGAAATTCCCTATTTACAA
65 ATTTTTGAAAAATTCACCTATTTTCATGAGTTTTTCATTTTTTCCTTGAAATGCCCTATTTACAA
*
3123917 AAAATCGAGTTTTCTATTCCATAAAAATTTTTGGG
130 AAAATCGAATTTTCTATTCCATAAAAATTTTTGGG
* * * * *
3123952 GGGATTTCTCTTGGTTTATAATTTTTAAAATTCATCAAATATCATTATTTAATTTA-TATTAAAT
1 GGGATTTTTCTTAGTTTAAAATTTTTAAAATTCATCAAATATCATTATTTAA-TCACCATT-AAT
** *
3124016 CA-TTTT-AAGAAATTCATTTATTTTCATGAGTTTTTTATTTTTTCCTTGAAATGCCCTTATTTT
64 CATTTTTGAA-AAATTCACCTATTTTCATGAGTTTTTCATTTTTTCCTTGAAATGCCC-TA-TTT
** **
3124079 TGAAAAAAT-GAATTTTCTATTCCATAAAGGTTTTTGGG
126 ACAAAAAATCGAATTTTCTATTCCATAAAAATTTTTGGG
* *
3124117 GGGATTTTTCTCAGTTTAAAATTTTTAAAATTCATCTAATAT
1 GGGATTTTTCTTAGTTTAAAATTTTTAAAATTCATCAAATAT
3124159 TGTTATTGAA
Statistics
Matches: 179, Mismatches: 22, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
163 4 0.02
164 93 0.52
165 72 0.40
166 10 0.06
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (164 bp):
GGGATTTTTCTTAGTTTAAAATTTTTAAAATTCATCAAATATCATTATTTAATCACCATTAATCA
TTTTTGAAAAATTCACCTATTTTCATGAGTTTTTCATTTTTTCCTTGAAATGCCCTATTTACAAA
AAATCGAATTTTCTATTCCATAAAAATTTTTGGG
Found at i:3124384 original size:5 final size:5
Alignment explanation
Indices: 3124374--3124398 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
3124364 ATTTTTAGAA
3124374 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
3124399 TTTCAACTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:3132308 original size:91 final size:91
Alignment explanation
Indices: 3132153--3132373 Score: 284
Period size: 91 Copynumber: 2.4 Consensus size: 91
3132143 GACCGACCAT
* * * * * * *
3132153 ACATTCCCCAATCATGTCCTTTTTCCTGAACCATTAGATGGTACTGATGCATCATATAATCCAAG
1 ACATTTCCCAATCATATCCTTTTTCCTCAACCACTAGATGGTACTAAAGAATCATATAATCCAAG
*
3132218 GTCTCA-AGGGCAAGGATATCCCAACC
66 ATCTCAGA-GGCAAGGATATCCCAACC
3132244 ACATTTCCCAATCATATCCTTTTTCCTCAACCACTAGATGGTACTAAAGAATCATATAATCCAAG
1 ACATTTCCCAATCATATCCTTTTTCCTCAACCACTAGATGGTACTAAAGAATCATATAATCCAAG
* * **
3132309 ATCTCTGAGGCAAGGATATTCTGACC
66 ATCTCAGAGGCAAGGATATCCCAACC
* * *
3132335 ATATTTCCCAATCATAT-TTTTTTCCTTAACCACTAGATG
1 ACATTTCCCAATCATATCCTTTTTCCTCAACCACTAGATG
3132374 ATATTGATGC
Statistics
Matches: 114, Mismatches: 15, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
90 20 0.18
91 93 0.82
92 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (91 bp):
ACATTTCCCAATCATATCCTTTTTCCTCAACCACTAGATGGTACTAAAGAATCATATAATCCAAG
ATCTCAGAGGCAAGGATATCCCAACC
Found at i:3132910 original size:46 final size:45
Alignment explanation
Indices: 3132860--3132976 Score: 126
Period size: 46 Copynumber: 2.5 Consensus size: 45
3132850 AACTGTATTA
* * **
3132860 GTTACCACCATGGTCAAACTCTTTTCATCATTGTTTGGCTGTAATG
1 GTTACCACC-TGGTCAAACTCTTTTCATCATTATTTGACTACAATG
* * *
3132906 GTTACCAACCTGGTCAAACCCTTTTCATCCTTATTTGACTACATTG
1 GTTACC-ACCTGGTCAAACTCTTTTCATCATTATTTGACTACAATG
* *
3132952 GTTACCACCCTAGTCAAATTCTTTT
1 GTTACCA-CCTGGTCAAACTCTTTT
3132977 TGTTCTTGTT
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
45 1 0.02
46 55 0.93
47 3 0.05
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (45 bp):
GTTACCACCTGGTCAAACTCTTTTCATCATTATTTGACTACAATG
Found at i:3133035 original size:41 final size:40
Alignment explanation
Indices: 3132990--3133117 Score: 123
Period size: 41 Copynumber: 3.1 Consensus size: 40
3132980 TCTTGTTGAT
3132990 TTTATCAGTTTTGCCTTGGTCAACTCTTCTAATAT-GTTAGC
1 TTTATCAGTTTTGCCTTGGTCAAC-CTTCTAAT-TGGTTAGC
** * * *
3133031 TTTATTGGTTTCGCCTTGGCCAACCTTCTAATTGGTTGGC
1 TTTATCAGTTTTGCCTTGGTCAACCTTCTAATTGGTTAGC
* * * * **
3133071 TTTATCAGTTTTTCCCTAGTCAACCCTTCTAACTCATTAGC
1 TTTATCAGTTTTGCCTTGGTCAA-CCTTCTAATTGGTTAGC
3133112 TTTATC
1 TTTATC
3133118 TATTTTACTC
Statistics
Matches: 69, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
39 1 0.01
40 29 0.42
41 39 0.57
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.45
Consensus pattern (40 bp):
TTTATCAGTTTTGCCTTGGTCAACCTTCTAATTGGTTAGC
Found at i:3133073 original size:40 final size:41
Alignment explanation
Indices: 3132997--3133075 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 41
3132987 GATTTTATCA
* *
3132997 GTTTTGCCTTGGTCAACTCTTCTAATATGTTAGCTTTATTG
1 GTTTCGCCTTGGCCAACTCTTCTAATATGTTAGCTTTATTG
*
3133038 GTTTCGCCTTGGCCAAC-CTTCTAAT-TGGTTGGCTTTAT
1 GTTTCGCCTTGGCCAACTCTTCTAATAT-GTTAGCTTTAT
3133076 CAGTTTTTCC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 1 0.03
40 18 0.53
41 15 0.44
ACGTcount: A:0.15, C:0.20, G:0.19, T:0.46
Consensus pattern (41 bp):
GTTTCGCCTTGGCCAACTCTTCTAATATGTTAGCTTTATTG
Found at i:3133134 original size:81 final size:81
Alignment explanation
Indices: 3132990--3133230 Score: 252
Period size: 81 Copynumber: 3.0 Consensus size: 81
3132980 TCTTGTTGAT
* * * * * * * * *
3132990 TTTATCAGTTTTGCCTTGGTCAACTCTTCTAA-T-ATGTTAGCTTTATTGGTTTCGCCTTGGCCA
1 TTTATCAGTTTTACCCTAGTCAACCCTTCTAACTCA--TTAGCTTTATCGATTTCACCCTAGCCA
*
3133053 ACCTTCTAATTGGTTGGC
64 ACCTTTTAATTGGTTGGC
* * * *
3133071 TTTATCAGTTTTTCCCTAGTCAACCCTTCTAACTCATTAGCTTTATCTATTTTACTCTAGCCAAC
1 TTTATCAGTTTTACCCTAGTCAACCCTTCTAACTCATTAGCTTTATCGATTTCACCCTAGCCAAC
*
3133136 CTTTTAATTAGTTGGC
66 CTTTTAATTGGTTGGC
** * * * * *
3133152 TTTATTGGTTTTACCCTAGTCAACCCTTCTAACTCGTTGGCTTTATCGGTTTCACCCTGGCTAAC
1 TTTATCAGTTTTACCCTAGTCAACCCTTCTAACTCATTAGCTTTATCGATTTCACCCTAGCCAAC
3133217 CTTTTAATTGGTTG
66 CTTTTAATTGGTTG
3133231 ACTTGTCTAT
Statistics
Matches: 132, Mismatches: 26, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
81 130 0.98
82 1 0.01
83 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.15, T:0.44
Consensus pattern (81 bp):
TTTATCAGTTTTACCCTAGTCAACCCTTCTAACTCATTAGCTTTATCGATTTCACCCTAGCCAAC
CTTTTAATTGGTTGGC
Found at i:3133203 original size:41 final size:41
Alignment explanation
Indices: 3133054--3133209 Score: 170
Period size: 41 Copynumber: 3.8 Consensus size: 41
3133044 CCTTGGCCAA
* * * *
3133054 CCTTCTAATTGGTTGGCTTTATCAGTTTTTCCCTAGTCAAC
1 CCTTCTAACTCGTTGGCTTTATCGGTTTTACCCTAGTCAAC
* * ** * *
3133095 CCTTCTAACTCATTAGCTTTATCTATTTTACTCTAGCCAA-
1 CCTTCTAACTCGTTGGCTTTATCGGTTTTACCCTAGTCAAC
* * * *
3133135 CCTTTTAATTAGTTGGCTTTATTGGTTTTACCCTAGTCAAC
1 CCTTCTAACTCGTTGGCTTTATCGGTTTTACCCTAGTCAAC
*
3133176 CCTTCTAACTCGTTGGCTTTATCGGTTTCACCCT
1 CCTTCTAACTCGTTGGCTTTATCGGTTTTACCCT
3133210 GGCTAACCTT
Statistics
Matches: 90, Mismatches: 24, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
40 30 0.33
41 60 0.67
ACGTcount: A:0.19, C:0.26, G:0.12, T:0.44
Consensus pattern (41 bp):
CCTTCTAACTCGTTGGCTTTATCGGTTTTACCCTAGTCAAC
Found at i:3133307 original size:43 final size:43
Alignment explanation
Indices: 3133258--3133405 Score: 140
Period size: 43 Copynumber: 3.5 Consensus size: 43
3133248 TGGTCAACCT
*
3133258 TTTTATCCTTTATTTACTTGTCAGCTTAGTCTTGGGTAAATCC
1 TTTTATCCTTTATTGACTTGTCAGCTTAGTCTTGGGTAAATCC
* * * * *** *
3133301 TTTTATCCTTTGTTGACTTGT-TGGTTCAATC-CCAGTCAA-CC
1 TTTTATCCTTTATTGACTTGTCAGCTT-AGTCTTGGGTAAATCC
* * *
3133342 TTTTTATCCTTTATTTACCTGTCAACTTAGTCTTGGGTAAATCC
1 -TTTTATCCTTTATTGACTTGTCAGCTTAGTCTTGGGTAAATCC
*
3133386 TTTTATCCTTTGTTGACTTG
1 TTTTATCCTTTATTGACTTG
3133406 ACGGTTCAAT
Statistics
Matches: 77, Mismatches: 23, Indels: 10
0.70 0.21 0.09
Matches are distributed among these distances:
41 2 0.03
42 28 0.36
43 45 0.58
44 2 0.03
ACGTcount: A:0.18, C:0.20, G:0.14, T:0.49
Consensus pattern (43 bp):
TTTTATCCTTTATTGACTTGTCAGCTTAGTCTTGGGTAAATCC
Found at i:3133474 original size:42 final size:42
Alignment explanation
Indices: 3133258--3133561 Score: 135
Period size: 43 Copynumber: 7.2 Consensus size: 42
3133248 TGGTCAACCT
* * *
3133258 TTTTATCCTTTATTTACTTGTC-AGCTTAGTCTTGGGTAAATCC
1 TTTTATCC-TTGTTTACTTGTCGA-CTTAGTCCTAGGTAAATCC
* * * * * *
3133301 TTTTATCCTTTGTTGACTTGTTG-GTTCAATCCCA-GTCAA-CC
1 TTTTATCC-TTGTTTACTTGTCGACTT-AGTCCTAGGTAAATCC
* * * * *
3133342 TTTTTATCCTTTATTTACCTGTCAACTTAGTCTTGGGTAAATCC
1 -TTTTATCC-TTGTTTACTTGTCGACTTAGTCCTAGGTAAATCC
* * * * * *
3133386 TTTTATCCTTTGTTGACTTGACG-GTTCAATCC-CGATCAACAT--
1 TTTTATCC-TTGTTTACTTGTCGACTT-AGTCCTAGGT-AA-ATCC
* *
3133428 TTTTATTCTTGTTTACCTGTCGACTTAGTCCTAGGTAAATCC
1 TTTTATCCTTGTTTACTTGTCGACTTAGTCCTAGGTAAATCC
* * * * * *
3133470 TTTTATCCTTTGTTGACTTGTC-AGTTCAATCCT-GATCAA-CT
1 TTTTATCC-TTGTTTACTTGTCGACTT-AGTCCTAGGTAAATCC
* *
3133511 TTTTCATCCCTTATTTACTTGTCGACTTAGTCCCAGGTAAATCC
1 TTTT-AT-CCTTGTTTACTTGTCGACTTAGTCCTAGGTAAATCC
3133555 TTTTATC
1 TTTTATC
3133562 TTTTGTTGGC
Statistics
Matches: 187, Mismatches: 54, Indels: 41
0.66 0.19 0.15
Matches are distributed among these distances:
40 2 0.01
41 24 0.13
42 74 0.40
43 78 0.42
44 9 0.05
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.45
Consensus pattern (42 bp):
TTTTATCCTTGTTTACTTGTCGACTTAGTCCTAGGTAAATCC
Found at i:3133477 original size:169 final size:168
Alignment explanation
Indices: 3133239--3133656 Score: 459
Period size: 169 Copynumber: 2.5 Consensus size: 168
3133229 TGACTTGTCT
* * * * *
3133239 ATTCAATCCTGGTCAACCTTTTTATCCTTTATTTACTTGTC-AGCTTAGTCTTGGGTAAATCCTT
1 ATTCAATCCCGATCAACCTTTTTATCC-TT-TTTACCTGTCGA-CTTAGTCCTAGGTAAATCCTT
** *
3133303 TTATCCTTTGTTGACTTGTTGGTTCAATCCCAG-TCAACCTTTTT-ATCCTTTATTTACCTGTCA
63 TTATCCTTTGTTGACTTGTCAGTTCAAT-CCAGATCAA-CTTTTTCATCCCTTATTTACCTGTCA
*** *
3133366 ACTTAGTCTTGGGTAAATCCTTTTATCCTTTGTTGACTTGACG
126 ACTTAGTCCCAGGTAAATCCTTTTATCCTTTGTTGACTTCACG
* * *
3133409 GTTCAATCCCGATCAACATTTTTATTCTTGTTTACCTGTCGACTTAGTCCTAGGTAAATCCTTTT
1 ATTCAATCCCGATCAACCTTTTTATCCTT-TTTACCTGTCGACTTAGTCCTAGGTAAATCCTTTT
* * *
3133474 ATCCTTTGTTGACTTGTCAGTTCAATCCTGATCAACTTTTTCATCCCTTATTTACTTGTCGACTT
65 ATCCTTTGTTGACTTGTCAGTTCAATCCAGATCAACTTTTTCATCCCTTATTTACCTGTCAACTT
* * *
3133539 AGTCCCAGGTAAATCCTTTTATCTTTTGTTGGCTTCATG
130 AGTCCCAGGTAAATCCTTTTATCCTTTGTTGACTTCACG
* * * * * **
3133578 ATTTAACCCCGATCAACCTTTGTATCCTTTATCTACCTATCGGCTTAGT-CTCAAAT-AATCCTT
1 ATTCAATCCCGATCAACCTTTTTATCCTTT-T-TACCTGTCGACTTAGTCCT-AGGTAAATCCTT
3133641 TTCATCCTTTGTTGAC
63 TT-ATCCTTTGTTGAC
3133657 CTACCGCTTG
Statistics
Matches: 209, Mismatches: 32, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
168 10 0.05
169 147 0.70
170 52 0.25
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.44
Consensus pattern (168 bp):
ATTCAATCCCGATCAACCTTTTTATCCTTTTTACCTGTCGACTTAGTCCTAGGTAAATCCTTTTA
TCCTTTGTTGACTTGTCAGTTCAATCCAGATCAACTTTTTCATCCCTTATTTACCTGTCAACTTA
GTCCCAGGTAAATCCTTTTATCCTTTGTTGACTTCACG
Found at i:3133497 original size:84 final size:85
Alignment explanation
Indices: 3133227--3133656 Score: 464
Period size: 85 Copynumber: 5.1 Consensus size: 85
3133217 CTTTTAATTG
* * * *
3133227 GTTGACTTGTCTA-TTCAATCCTGGTCAACCTTTTTATCCTTTATTTACTTGTC-AGCTTAGTCT
1 GTTGACTTGTC-AGTTCAATCCCGATCAACCTTTTTATCCTTTATTTACCTGTCGA-CTTAGTCC
*
3133290 TGGGTAAATCCTTTTATCCTTT
64 TAGGTAAATCCTTTTATCCTTT
** * *
3133312 GTTGACTTGTTGGTTCAATCCC-AGTCAACCTTTTTATCCTTTATTTACCTGTCAACTTAGTCTT
1 GTTGACTTGTCAGTTCAATCCCGA-TCAACCTTTTTATCCTTTATTTACCTGTCGACTTAGTCCT
*
3133376 GGGTAAATCCTTTTATCCTTT
65 AGGTAAATCCTTTTATCCTTT
* * * * *
3133397 GTTGACTTGACGGTTCAATCCCGATCAACATTTTTATTC-TTGTTTACCTGTCGACTTAGTCCTA
1 GTTGACTTGTCAGTTCAATCCCGATCAACCTTTTTATCCTTTATTTACCTGTCGACTTAGTCCTA
3133461 GGTAAATCCTTTTATCCTTT
66 GGTAAATCCTTTTATCCTTT
* * * *
3133481 GTTGACTTGTCAGTTCAATCCTGATCAA-CTTTTTCATCCCTTATTTACTTGTCGACTTAGTCCC
1 GTTGACTTGTCAGTTCAATCCCGATCAACCTTTTT-ATCCTTTATTTACCTGTCGACTTAGTCCT
*
3133545 AGGTAAATCCTTTTATCTTTT
65 AGGTAAATCCTTTTATCCTTT
* * * * * * *
3133566 GTTGGC-T-TCATGATTTAACCCCGATCAACCTTTGTATCCTTTATCTACCTATCGGCTTAGT-C
1 GTTGACTTGTCA-G-TTCAATCCCGATCAACCTTTTTATCCTTTATTTACCTGTCGACTTAGTCC
**
3133628 TCAAAT-AATCCTTTTCATCCTTT
64 T-AGGTAAATCCTTTT-ATCCTTT
3133651 GTTGAC
1 GTTGAC
3133657 CTACCGCTTG
Statistics
Matches: 297, Mismatches: 37, Indels: 22
0.83 0.10 0.06
Matches are distributed among these distances:
83 8 0.03
84 81 0.27
85 201 0.68
86 7 0.02
ACGTcount: A:0.20, C:0.23, G:0.13, T:0.44
Consensus pattern (85 bp):
GTTGACTTGTCAGTTCAATCCCGATCAACCTTTTTATCCTTTATTTACCTGTCGACTTAGTCCTA
GGTAAATCCTTTTATCCTTT
Found at i:3137004 original size:28 final size:28
Alignment explanation
Indices: 3136934--3137020 Score: 106
Period size: 28 Copynumber: 3.1 Consensus size: 28
3136924 ACTTTAGACT
* *
3136934 TTGTCTTGATAAAACAAACTTAT-C-TA
1 TTGTCTTGATAAGACAAGCTTATCCATA
*
3136960 GTTATCTTGATAAGACAAGCTTATCCATA
1 -TTGTCTTGATAAGACAAGCTTATCCATA
* *
3136989 TTGTCTTTATATGACAAGCTTATCCATA
1 TTGTCTTGATAAGACAAGCTTATCCATA
3137017 TTGT
1 TTGT
3137021 GTTAACATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
27 20 0.38
28 30 0.58
29 2 0.04
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.40
Consensus pattern (28 bp):
TTGTCTTGATAAGACAAGCTTATCCATA
Found at i:3137089 original size:52 final size:52
Alignment explanation
Indices: 3137022--3137120 Score: 153
Period size: 52 Copynumber: 1.9 Consensus size: 52
3137012 CCATATTGTG
* * *
3137022 TTAACATATATTAGTTTAGACATTATCTCTTGTAAAGACAACCTTATTAGGT
1 TTAACACATAATAGTTTAGACATTATCCCTTGTAAAGACAACCTTATTAGGT
* *
3137074 TTAACACATAATAGTTTAGACATTGTCCCTTGTGAAGACAACCTTAT
1 TTAACACATAATAGTTTAGACATTATCCCTTGTAAAGACAACCTTAT
3137121 CAAGTTTGTC
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 42 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.37
Consensus pattern (52 bp):
TTAACACATAATAGTTTAGACATTATCCCTTGTAAAGACAACCTTATTAGGT
Found at i:3137187 original size:15 final size:15
Alignment explanation
Indices: 3137169--3137198 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3137159 CAAGTCCAAA
3137169 TTTTT-TTAAACTTT
1 TTTTTATTAAACTTT
3137183 TTTTTATTAAACTTT
1 TTTTTATTAAACTTT
3137198 T
1 T
3137199 CAATTAAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTTATTAAACTTT
Found at i:3139166 original size:79 final size:78
Alignment explanation
Indices: 3139062--3139312 Score: 287
Period size: 78 Copynumber: 3.2 Consensus size: 78
3139052 AGATAATAAC
*
3139062 GGGGTTGGAGTATCCCTTTGAAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGAT
1 GGGGTTGGAGTATCCC-TTGGAAATAACGGGGTTAGAGTATCCCCGATTAT-AAAAATTGATGAT
*
3139127 TTCGAAATAAAATC-
64 TTAGAAATAAAATCA
* * * * * *
3139141 GGGATTGGAGTATCCTCTTGGAAATAACAGGGTTGGAGTAT-CCCGACTATAAAAAATTAATGTT
1 GGGGTTGGAGTATCC-CTTGGAAATAACGGGGTTAGAGTATCCCCGATTAT-AAAAATTGATGAT
*
3139205 TTAGAAATAAAA-CT
64 TTAGAAATAAAATCA
* * *
3139219 GGGGTTGGAGTATCCCCTCGGAAATAACGAGGTTAGAGTATCCCCGATTATAAAAATTGGT-ATT
1 GGGGTTGGAGTAT-CCCTTGGAAATAACGGGGTTAGAGTATCCCCGATTATAAAAATTGATGATT
* *
3139283 TTGAAAATGAAATCA
65 TAG-AAATAAAATCA
3139298 -GGGTTGGAGTATCCC
1 GGGGTTGGAGTATCCC
3139313 CGATTGTGAA
Statistics
Matches: 145, Mismatches: 21, Indels: 14
0.81 0.12 0.08
Matches are distributed among these distances:
77 8 0.06
78 90 0.62
79 46 0.32
80 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (78 bp):
GGGGTTGGAGTATCCCTTGGAAATAACGGGGTTAGAGTATCCCCGATTATAAAAATTGATGATTT
AGAAATAAAATCA
Found at i:3139325 original size:129 final size:131
Alignment explanation
Indices: 3139168--3139506 Score: 377
Period size: 130 Copynumber: 2.6 Consensus size: 131
3139158 TTGGAAATAA
* * * *
3139168 CAGGGTTGGAGTAT-CCCGACTATAAAAAATTAATGTTTTAGAAATAAAACTGGGGTTGGAGTAT
1 CAGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACTGGGGTTGGAGTAT
* *
3139232 CCCCTCGGAAATAACGA-GGTTAG-AGTATCCCCGATTAT-AAAAATTGGTATTTTGAAAATGAA
66 CCCCTCGGAAATAACGAGGGTT-GCAGTATCCCCAATTATGAAAAATTGGTATTTTGAAAATAAA
3139294 AT
130 AT
* * * * *
3139296 CAGGGTTGGAGTATCCCCGATTGTGAAAAATCGATGATTTAGAAATAAGACCGGGGTTGAAGTAT
1 CAGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACTGGGGTTGGAGTAT
* * * * *
3139361 CTCCTTGGAAATAAC-AGGGTTGCAGTATCCCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAA
66 CCCCTCGGAAATAACGAGGGTTGCAGTATCCCCAATTATGAAAAATTGGTATTTTGAAAATAAAA
3139425 T
131 T
* * * * * * *
3139426 C-GAAGTTGGAGTATCCCCTATTGTGGAAAATTGGTATTTTAGAAATAAAA-TCGGGATTAGAGT
1 CAG-GGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACT-GGGGTTGGAGT
* *
3139489 ATCCCTTCGAAAATAACG
64 ATCCCCTCGGAAATAACG
3139507 GGACTGAAGT
Statistics
Matches: 172, Mismatches: 32, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
128 16 0.09
129 72 0.42
130 84 0.49
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (131 bp):
CAGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTAGAAATAAAACTGGGGTTGGAGTAT
CCCCTCGGAAATAACGAGGGTTGCAGTATCCCCAATTATGAAAAATTGGTATTTTGAAAATAAAA
T
Found at i:3139449 original size:51 final size:51
Alignment explanation
Indices: 3139379--3139478 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 51
3139369 AAATAACAGG
* *
3139379 GTTGCAGTATCCCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAATCGAA
1 GTTGCAGTATCCCCAATTGTGAAAAATTGGTATTTTAGAAATAAAATCGAA
* * *
3139430 GTTGGAGTATCCCCTATTGTGGAAAATTGGTATTTTAGAAATAAAATCG
1 GTTGCAGTATCCCCAATTGTGAAAAATTGGTATTTTAGAAATAAAATCG
3139479 GGATTAGAGT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.33
Consensus pattern (51 bp):
GTTGCAGTATCCCCAATTGTGAAAAATTGGTATTTTAGAAATAAAATCGAA
Found at i:3139489 original size:51 final size:51
Alignment explanation
Indices: 3139384--3139493 Score: 150
Period size: 51 Copynumber: 2.2 Consensus size: 51
3139374 ACAGGGTTGC
* * *
3139384 AGTATCCCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAATCGAAGTTGG
1 AGTATCCCCAATTGTGAAAAATTGGTATTTTAGAAATAAAATCGAAGTTAG
* * *
3139435 AGTATCCCCTATTGTGGAAAATTGGTATTTTAGAAATAAAATCG-GGATTAG
1 AGTATCCCCAATTGTGAAAAATTGGTATTTTAGAAATAAAATCGAAG-TTAG
3139486 AGTATCCC
1 AGTATCCC
3139494 TTCGAAAATA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 1 0.02
51 51 0.98
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.32
Consensus pattern (51 bp):
AGTATCCCCAATTGTGAAAAATTGGTATTTTAGAAATAAAATCGAAGTTAG
Found at i:3141997 original size:20 final size:20
Alignment explanation
Indices: 3141972--3142079 Score: 79
Period size: 20 Copynumber: 5.8 Consensus size: 20
3141962 AAAATGCCTG
* *
3141972 AATGTATCGATACATTTTA-C
1 AATGTATCGATACA-ATCAGC
3141992 AATGTATCGATACAATCAGC
1 AATGTATCGATACAATCAGC
3142012 AATGTATCG-----AT-A-C
1 AATGTATCGATACAATCAGC
* * **
3142025 AATGTATCAATACAATGAAA
1 AATGTATCGATACAATCAGC
* *
3142045 AATGTATCGATACAATGAAC
1 AATGTATCGATACAATCAGC
3142065 AATGTATCGATACAA
1 AATGTATCGATACAA
3142080 ATTGTGAAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
13 9 0.12
14 1 0.01
15 2 0.03
18 2 0.03
19 3 0.04
20 57 0.77
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACAATCAGC
Found at i:3142029 original size:13 final size:13
Alignment explanation
Indices: 3142011--3142041 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3142001 ATACAATCAG
*
3142011 CAATGTATCGATA
1 CAATGTATCAATA
3142024 CAATGTATCAATA
1 CAATGTATCAATA
3142037 CAATG
1 CAATG
3142042 AAAAATGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (13 bp):
CAATGTATCAATA
Found at i:3142031 original size:33 final size:33
Alignment explanation
Indices: 3141989--3142061 Score: 110
Period size: 33 Copynumber: 2.2 Consensus size: 33
3141979 CGATACATTT
* **
3141989 TACAATGTATCGATACAATCAGCAATGTATCGA
1 TACAATGTATCAATACAATCAAAAATGTATCGA
*
3142022 TACAATGTATCAATACAATGAAAAATGTATCGA
1 TACAATGTATCAATACAATCAAAAATGTATCGA
3142055 TACAATG
1 TACAATG
3142062 AACAATGTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.27
Consensus pattern (33 bp):
TACAATGTATCAATACAATCAAAAATGTATCGA
Found at i:3142641 original size:40 final size:40
Alignment explanation
Indices: 3142597--3142697 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 40
3142587 GTCCCACTCT
** * *
3142597 TTGAGGACAAAGGAAAAGAGAATGAAATGGGTCTTGC-TC
1 TTGAGGACAAAGGAAAAGAGAAAAAAAAGGGTCCTGCTTC
*
3142636 ATTGAGGACAAAGGAAAA-AGGAAAAAAAAGTGTCCTGCTTC
1 -TTGAGGACAAAGGAAAAGA-GAAAAAAAAGGGTCCTGCTTC
3142677 TTGAGGACAAAGTGAAAAGAG
1 TTGAGGACAAAG-GAAAAGAG
3142698 TACGTCCTGC
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 1 0.02
40 42 0.81
41 8 0.15
42 1 0.02
ACGTcount: A:0.44, C:0.10, G:0.29, T:0.18
Consensus pattern (40 bp):
TTGAGGACAAAGGAAAAGAGAAAAAAAAGGGTCCTGCTTC
Found at i:3142762 original size:45 final size:44
Alignment explanation
Indices: 3142704--3142868 Score: 157
Period size: 45 Copynumber: 3.8 Consensus size: 44
3142694 AGAGTACGTC
*
3142704 CTGCT-TTTCGAGGATAAAGGAAAGAAAAGGAAAACGAAATGTGTT
1 CTGCTCTTT-GAGGACAAAGGAAAGAAAAGGAAAA-GAAATGTGTT
* *
3142749 CTGCTCTTTGAGGACAAAAGAAAG---AGGAAAATAAA-GTGCATT
1 CTGCTCTTTGAGGACAAAGGAAAGAAAAGGAAAAGAAATGTG--TT
* * * *
3142791 CTGCTCTTTGAGGACAAAAGGGAAA-AAAAGGGAATGAAGTGTGTC
1 CTGCTCTTTGAGGAC-AAA-GGAAAGAAAAGGAAAAGAAATGTGTT
3142836 CTGCTCTTTGAGGACAAAGG--AGAAAAGGAAAAG
1 CTGCTCTTTGAGGACAAAGGAAAGAAAAGGAAAAG
3142869 GCATCCTACT
Statistics
Matches: 99, Mismatches: 11, Indels: 23
0.74 0.08 0.17
Matches are distributed among these distances:
40 3 0.03
41 4 0.04
42 33 0.33
43 5 0.05
44 7 0.07
45 34 0.34
46 10 0.10
47 3 0.03
ACGTcount: A:0.41, C:0.11, G:0.28, T:0.20
Consensus pattern (44 bp):
CTGCTCTTTGAGGACAAAGGAAAGAAAAGGAAAAGAAATGTGTT
Found at i:3142937 original size:61 final size:61
Alignment explanation
Indices: 3142857--3143351 Score: 669
Period size: 61 Copynumber: 8.1 Consensus size: 61
3142847 GGACAAAGGA
* * *
3142857 GAAAAGGAAAAGGCATCCTACTCTTTGAGGACTA-AAAAGTGCCACCAACTCGTGTGGGCTTT
1 GAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
* * * ** *
3142919 GAAAAGAAAAGGCGTCCTACTCTTTGAGGA-TTGAAAGGTGCCACCAACTCATGTGGGCTGT
1 GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTT
* * **
3142980 GAAAAGGAAATGCGTCCTGCTCTTTGAGGAC-AGGAAGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTA-GAAAATGCCACCAACTTGTGTGGGCTTT
* * *
3143041 GCAAAGAGAAA-GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAAGA-AAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
* * *
3143102 GAAAGGAAAAGGCGTCATGCTCTTTGAGGACTAGAAAATGCCACCAATTTGTGTGGGCTTT
1 GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
* * *
3143163 GAAAGGAAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
*
3143224 G-AAAGTCAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAAG-AAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
*
3143285 GAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
3143347 -AAAAG
1 GAAAAG
3143352 GTGTCATGCT
Statistics
Matches: 387, Mismatches: 36, Indels: 21
0.87 0.08 0.05
Matches are distributed among these distances:
60 7 0.02
61 343 0.89
62 37 0.10
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (61 bp):
GAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:3143447 original size:94 final size:96
Alignment explanation
Indices: 3143296--3143472 Score: 295
Period size: 94 Copynumber: 1.9 Consensus size: 96
3143286 AAAGGAAAAG
* *
3143296 GCGTCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCATGC
1 GCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGTGTCATGC
3143361 TCTTTGAGGACT-AAAGGGCGAAAGGAGAGA
66 TCTTTGAGGACTGAAAGGGCGAAAGGAGAGA
** *
3143391 GCGTCCTACTCTTTGAGGACT-GGGAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGTGTCCTGC
1 GCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGTGTCATGC
3143455 TCTTTGAGGACTGAAAGG
66 TCTTTGAGGACTGAAAGG
3143473 TGCCACGAAC
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
94 51 0.67
95 25 0.33
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (96 bp):
GCGTCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGTGTCATGC
TCTTTGAGGACTGAAAGGGCGAAAGGAGAGA
Found at i:3143477 original size:55 final size:55
Alignment explanation
Indices: 3143391--3143694 Score: 362
Period size: 55 Copynumber: 5.4 Consensus size: 55
3143381 AAAGGAGAGA
* * *
3143391 GCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTAGGCTTTAAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * *
3143446 GTGTCCTGCTCTTTGAGGACT-GAAAGGTGCCACGAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAG
* *
3143501 GCGTCCTGCTCTTTGAAGG-CTGGAAAATGCCACCAACTCGTGTGGGCTTTAAAATG
1 GCGTCCTGCTCTTTG-AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-G
* *
3143557 AAAAAGCGTCCTGCTCTTTAAGGACTAGAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
1 -----GCGTCCTGCTCTTTGAGGACT-G-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * *
3143619 GCGTCTTACTCTTTGAGGACT-GAAATGTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAG
*
3143674 ACGTCCTGCTCTTTGAGGACT
1 GCGTCCTGCTCTTTGAGGACT
3143695 AAAGGGTGAA
Statistics
Matches: 213, Mismatches: 23, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
54 6 0.03
55 131 0.62
56 8 0.04
57 18 0.08
60 3 0.01
61 16 0.08
62 2 0.01
63 29 0.14
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:3143654 original size:118 final size:110
Alignment explanation
Indices: 3143391--3143694 Score: 378
Period size: 118 Copynumber: 2.7 Consensus size: 110
3143381 AAAGGAGAGA
* * *
3143391 GCGTCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGTGTCCTGCT
1 GCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCT
* * * *
3143456 CTTTGAGGACTGAAAGGTGCCACGAACTTGTGTGGGCTTTGAAAG
66 CTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * *
3143501 GCGTCCTGCTCTTTGAAGG-CTGGAAAATGCCACCAACTCGTGTGGGCTTTAAAATGAAAAAGCG
1 GCGTCCTACTCTTTG-AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-G-----GCG
3143565 TCCTGCTCTTTAAGGACTAGAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
59 TCCTGCTCTTTAAGGACT-G-AAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * *
3143619 GCGTCTTACTCTTTGAGGACT-GAAATGTGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGC
1 GCGTCCTACTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGC
*
3143683 TCTTTGAGGACT
65 TCTTTAAGGACT
3143695 AAAGGGTGAA
Statistics
Matches: 166, Mismatches: 17, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
110 45 0.27
111 4 0.02
112 19 0.11
116 19 0.11
117 9 0.05
118 70 0.42
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (110 bp):
GCGTCCTACTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCT
CTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:3143783 original size:61 final size:61
Alignment explanation
Indices: 3143715--3143833 Score: 213
Period size: 61 Copynumber: 2.0 Consensus size: 61
3143705 AGGAGAGAGT
*
3143715 GTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACT-TGTGTGGGCTTTAAAAGGAAAAGGC
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAA-TATGTGTGGGCTTTAAAAGGAAAAGGC
3143776 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAATATGTGTGGGCTTTAAAAGGAAAA
1 GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAATATGTGTGGGCTTTAAAAGGAAAA
3143834 AGAAGGAAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
60 1 0.02
61 55 0.98
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (61 bp):
GTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAATATGTGTGGGCTTTAAAAGGAAAAGGC
Found at i:3144025 original size:61 final size:61
Alignment explanation
Indices: 3143879--3144089 Score: 282
Period size: 61 Copynumber: 3.4 Consensus size: 61
3143869 AAGGGGGAAT
* *
3143879 AAAGTGCGTCCTACTCTTTGAGGACT-AGGAGGTGCCACCAACTTGTGTGGGCTTT-GAAGGA
1 AAAG-GCGTCCTACTCTTTGAGGACTAAAGA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGA
***
3143940 GTTGGCGTCCTACTCTTTGAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
1 AAAGGCGTCCTACTCTTTGAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
* * * *
3144001 AAAGGCGTCCTACTCTTTAAGGACTAAAGGGTGCCACCCACTTGTGTGGGCTTTAAAAAGAAA
1 AAAGGCGTCCTACTCTTTGAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTT-AAAAG-GA
*
3144064 AAAGGCGTCCTGCTCTTTGAGGACTA
1 AAAGGCGTCCTACTCTTTGAGGACTA
3144090 GAAGGGCTAA
Statistics
Matches: 132, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
60 45 0.34
61 57 0.43
62 5 0.04
63 25 0.19
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (61 bp):
AAAGGCGTCCTACTCTTTGAGGACTAAAGAGTGCCACCAACTTGTGTGGGCTTTAAAAGGA
Found at i:3147958 original size:79 final size:79
Alignment explanation
Indices: 3147864--3148273 Score: 468
Period size: 79 Copynumber: 5.2 Consensus size: 79
3147854 GATAATAACA
* * * * * *
3147864 GGGTTGGAGTATCCCCTTGAAAATAATGGAGTTGAAGTATCTCCGATTGTGAAAAATTGATGATT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGATT
* *
3147929 TCGAAATAAAATTG
66 TAGAAATAAAATCG
* * * *
3147943 GGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACTATAAAAAATTGATGTTT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGATT
*
3148008 TAGAAATAAAACCG
66 TAGAAATAAAATCG
* * *
3148022 GGGTTGGAGTATCCCCTCGAAAGTAACGGGGTTGGAGTATCCCCGATTAT-AAAAATCGGT-ATT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGATT
* *
3148085 TTGAAAATGAAATCG
66 TAG-AAATAAAATCG
* * * * **
3148100 GGGTTAGAGTATCCCCTCGAAAATAACGGAGTTAGAGTATCTCCGATTATGAAAAATCAATGATT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGATT
**
3148165 TAGAAATAAGGTCG
66 TAGAAATAAAATCG
* * * * *
3148179 GGGTTGAAGTATCCCCT-TAGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGGTG-T
1 GGGTTGGAGTATCCCCTCGA-AAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGAT
*
3148242 TTTGAAAATAAAATCG
65 TTAG-AAATAAAATCG
*
3148258 GAGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
3148274 GATTGTGGAA
Statistics
Matches: 277, Mismatches: 49, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
77 4 0.01
78 67 0.24
79 201 0.73
80 5 0.02
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGATT
TAGAAATAAAATCG
Found at i:3148128 original size:157 final size:157
Alignment explanation
Indices: 3147864--3148273 Score: 509
Period size: 157 Copynumber: 2.6 Consensus size: 157
3147854 GATAATAACA
* * * * * *
3147864 GGGTTGGAGTATCCCCTTGAAAATAATGGAGTTGAAGTATCTCCGATTGTGAAAAATTGATGATT
1 GGGTTGGAGTATCCCCTAG-AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGT-ATT
* * * * *
3147929 TCG-AAATAAAATTGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGACTAT
64 TTGAAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGAGTTAGAGTATCCCCGACTAT
** *
3147993 AAAAAATTGATGTTTTAGAAATAAAACCG
129 AAAAAATCAATGATTTAGAAATAAAACCG
* * *
3148022 GGGTTGGAGTATCCCCTCGAAAGTAACGGGGTTGGAGTATCCCCGATTAT-AAAAATCGGTATTT
1 GGGTTGGAGTATCCCCTAGAAA-TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTT
* * * * *
3148086 TGAAAATGAAATCGGGGTTAGAGTATCCCCTCGAAAATAACGGAGTTAGAGTATCTCCGATTATG
65 TGAAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGAGTTAGAGTATCCCCGACTATA
***
3148151 AAAAATCAATGATTTAGAAATAAGGTCG
130 AAAAATCAATGATTTAGAAATAAAACCG
* * *
3148179 GGGTTGAAGTATCCCCTTAGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGGTGTTT
1 GGGTTGGAGTATCCCC-TAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTT
*
3148244 TGAAAATAAAATCGGAGTTGGAGTATCCCC
65 TGAAAATAAAATCGGGGTTGGAGTATCCCC
3148274 GATTGTGGAA
Statistics
Matches: 215, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
156 5 0.02
157 126 0.59
158 84 0.39
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (157 bp):
GGGTTGGAGTATCCCCTAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTT
GAAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGAGTTAGAGTATCCCCGACTATAA
AAAATCAATGATTTAGAAATAAAACCG
Found at i:3148272 original size:51 final size:51
Alignment explanation
Indices: 3148208--3148323 Score: 155
Period size: 51 Copynumber: 2.3 Consensus size: 51
3148198 GAAATAACGG
* *
3148208 GGTTGGAGTATCCCCAATTGTGAAAAATTGGTGTTTT-GAAAATAAAATCGGA
1 GGTTGGAGTATCCCCAATTGTGAAAAATTGGTATTTTAG-AAATAAAAT-GAA
* * *
3148260 -GTTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAATTAA
1 GGTTGGAGTATCCCCAATTGTGAAAAATTGGTATTTTAGAAATAAAATGAA
3148310 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
3148324 TTCGAAAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
50 1 0.02
51 55 0.96
52 1 0.02
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.32
Consensus pattern (51 bp):
GGTTGGAGTATCCCCAATTGTGAAAAATTGGTATTTTAGAAATAAAATGAA
Found at i:3153554 original size:19 final size:20
Alignment explanation
Indices: 3153509--3153560 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
3153499 TTACAAGCCA
*
3153509 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATCTTGGG
*
3153529 ATGTATCGATACATCTTGTG
1 ATGTATCGATACATCTTGGG
*
3153549 -TGTATCAATACA
1 ATGTATCGATACA
3153561 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 11 0.38
20 18 0.62
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATCTTGGG
Found at i:3154725 original size:16 final size:16
Alignment explanation
Indices: 3154697--3154735 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
3154687 TTCTTCCTTT
*
3154697 TTCTTTCTTTTCTTTCC
1 TTCTTT-TTTTCTCTCC
3154714 TTCTTTTTTTCTCTCC
1 TTCTTTTTTTCTCTCC
3154730 TT-TTTT
1 TTCTTTT
3154736 AGCTAAACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.19
16 11 0.52
17 6 0.29
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (16 bp):
TTCTTTTTTTCTCTCC
Found at i:3155558 original size:166 final size:165
Alignment explanation
Indices: 3155050--3155628 Score: 526
Period size: 166 Copynumber: 3.5 Consensus size: 165
3155040 AATATATACA
* * * * **
3155050 AAAAAATTCAAAATTTATG-AAATAAATTG-ATATTTTCAAAACTAATTTAATGAT-AGTTAAAT
1 AAAAAATTCAAAACTCATGCAAATAAA-TGAAT-TTTTGAAAACTGATTTAAT-ATGAAATAAAT
* * ** * * * *
3155112 AACA-ATATTAGATGAATTTTAAAAATTTTAAATCAAGAAAAATTTGCCTGAAAATATTTGCGGA
63 AA-ATATATTTGATGAATATTAAAAATTAAAAACCAAGAAAAATCTCCCTGAAAATATTTACGGA
* * *** *
3155176 GTAGAAAACTCAAT-TTTTCAAAAATAG-GGGTATTTCAAG
127 GTAGAAAACTCAGTATTTT-AAAAAAAGAAAAT-TTTAAAG
* * * * *
3155215 AAAAAAATTAAAAACTCATGAAAATAAATGGATTTTTAAAAATTGATTTAATATGAAATATATAA
1 -AAAAAATTCAAAACTCATGCAAATAAATGAATTTTTGAAAACTGATTTAATATG--A-A-ATAA
* * * * * * *
3155280 ATAAATATATTTGATGAATCTAAAAAAATTAAAAACTATGAAAAATCTCCCTGAAAACATCTACA
61 ATAAATATATTTGATGAATAT-TAAAAATTAAAAACCAAGAAAAATCTCCCTGAAAATATTTACG
* * * * * *
3155345 GAGTAGAAAACTCCGTATTTCATAAATAGAAGAATTTCAAGG
125 GAGTAGAAAACTCAGTATTTTAAAAAAAGAA-AATTTTAAAG
*
3155387 AAAAAATTCAAAACTCATGCAAATAAATGAATTTTTGAAAACTGATTTAATATGAAATAAGTAAA
1 AAAAAATTCAAAACTCATGCAAATAAATGAATTTTTGAAAACTGATTTAATATGAAATAAATAAA
* *
3155452 TATATTTGATGAATATTAAAAATTAAAAACCAAGAAAAATCTCCCCGAAAATATTTATGGAGTAG
66 TATATTTGATGAATATTAAAAATTAAAAACCAAGAAAAATCTCCCTGAAAATATTTACGGAGTAG
* *
3155517 AAAACTCTGTATTTTAGAAACAAGAAAATTTTAAAG
131 AAAACTCAGTATTTTA-AAAAAAGAAAATTTTAAAG
* ** * *
3155553 AAAAAATTCAAAACTCATGCGAATAAATGAAAATTTGAAAATTGATTTAATAATG-ATTAAAT-A
1 AAAAAATTCAAAACTCATGCAAATAAATGAATTTTTGAAAACTGATTTAAT-ATGAAATAAATAA
3155616 ATAATATTTGATG
65 AT-ATATTTGATG
3155629 TATTTTTAAA
Statistics
Matches: 338, Mismatches: 60, Indels: 30
0.79 0.14 0.07
Matches are distributed among these distances:
165 5 0.01
166 159 0.47
167 41 0.12
168 2 0.01
169 2 0.01
170 20 0.06
171 101 0.30
172 7 0.02
173 1 0.00
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (165 bp):
AAAAAATTCAAAACTCATGCAAATAAATGAATTTTTGAAAACTGATTTAATATGAAATAAATAAA
TATATTTGATGAATATTAAAAATTAAAAACCAAGAAAAATCTCCCTGAAAATATTTACGGAGTAG
AAAACTCAGTATTTTAAAAAAAGAAAATTTTAAAG
Found at i:3155706 original size:166 final size:167
Alignment explanation
Indices: 3155207--3155724 Score: 471
Period size: 166 Copynumber: 3.1 Consensus size: 167
3155197 AAATAGGGGT
* * * ** * *
3155207 ATTTC-AAGAAAAAAATTAAAAACTCATGAAAATAAATGGATTTTTAAAAATTGATTTAATATGA
1 ATTTCAAAG-AAAAAATTCAAAACTCATGCAAATAAATGAAAATTTGAAAACTGATTTAATATG-
* * * * *
3155271 AATATATAAATAAATATATTTGATGAATCTAAAAAAATTAAAAACTATGAAAAATCTCCCTG-AA
64 -A-A-ATAAATAAATATATTTGATGAATAT-TAAAAATTAAAAACCAAGAAAAATCTCCCCGAAA
* * * * * * * *
3155335 AACATCTACAGAGTAGAAAACTCCGTATTTCATAAA-TAGAAGA
125 AAAAT-TACGGAGAAAAAAACTCTGTATTTGAGAAACAAGAAGA
* **
3155378 ATTTCAAGGAAAAAATTCAAAACTCATGCAAATAAATGAATTTTTGAAAACTGATTTAATATGAA
1 ATTTCAAAGAAAAAATTCAAAACTCATGCAAATAAATGAAAATTTGAAAACTGATTTAATATGAA
* * *
3155443 ATAAGTAAATATATTTGATGAATATTAAAAATTAAAAACCAAGAAAAATCTCCCCGAAAATATTT
66 ATAAATAAATATATTTGATGAATATTAAAAATTAAAAACCAAGAAAAATCTCCCCGAAAAAAATT
* * * *
3155508 ATGGAGTAGAAAACTCTGTATTTTAGAAACAAGAA-A
131 ACGGAGAAAAAAACTCTGTATTTGAGAAACAAGAAGA
* * *
3155544 ATTTTAAAGAAAAAATTCAAAACTCATGCGAATAAATGAAAATTTGAAAATTGATTTAATAATG-
1 ATTTCAAAGAAAAAATTCAAAACTCATGCAAATAAATGAAAATTTGAAAACTGATTTAAT-ATGA
* * * * ** *
3155608 ATTAAAT-AATAATATTTGATGTATTTTTAAAATTTTAAACCTATG-AAAATCCTCCCC-AAAAA
65 AATAAATAAAT-ATATTTGATGAATATTAAAAATTAAAAACC-AAGAAAAAT-CTCCCCGAAAAA
3155670 AATTACGGAGAAAAAAAC-CTCGTAATTTGA-AAACAAGAAGA
127 AATTACGGAGAAAAAAACTCT-GT-ATTTGAGAAACAAGAAGA
*
3155711 ATTCCAAAAGAAAA
1 ATTTC-AAAGAAAA
3155725 TAAATCACTC
Statistics
Matches: 293, Mismatches: 43, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
165 5 0.02
166 171 0.58
167 51 0.17
168 9 0.03
169 1 0.00
171 54 0.18
172 2 0.01
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.29
Consensus pattern (167 bp):
ATTTCAAAGAAAAAATTCAAAACTCATGCAAATAAATGAAAATTTGAAAACTGATTTAATATGAA
ATAAATAAATATATTTGATGAATATTAAAAATTAAAAACCAAGAAAAATCTCCCCGAAAAAAATT
ACGGAGAAAAAAACTCTGTATTTGAGAAACAAGAAGA
Found at i:3156472 original size:47 final size:48
Alignment explanation
Indices: 3156289--3156816 Score: 241
Period size: 47 Copynumber: 11.2 Consensus size: 48
3156279 CATGTCGAAT
* * *
3156289 GAGGATGAAAAGAGTTTGACCAGGAT--TAATGCCAATAAAGTCAAA-CA
1 GAGGATG-AAAGAGTTTGACTAGG-TCCTAATGCCAATATAGTCAAATGA
* * * ** * * *
3156336 AAAG-TGAGAAGAGTTTGACCATATCCCAATGCCAATGTAGTCAAA-CA
1 GAGGATGA-AAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAATGA
* * * * * * *
3156383 -AGGGTGGAAAGAGCTTAACTTGGTCTTAACGCCAATACAGTCAAATGA
1 GAGGAT-GAAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAATGA
* * * *
3156431 GAGTA-GAAAGAGTTTGACTAGGTCCTAATGTCAGTATAGTCAAA-CA
1 GAGGATGAAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAATGA
* * ** * *
3156477 -AGGATGAAGAGAGTTTGGCCAGACCCTAATGCCAATGTGGTCAAATGA
1 GAGGATGAA-AGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAATGA
* * *
3156525 G-GGATGAAAAGAGTTTGACTAGGTCCTAATACTAATATAGTCAAA-CA
1 GAGGATG-AAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAATGA
* ** * **
3156572 AAGGATGAAA-AGTTTTGACTAGG-CACTAATGCCAATGCAATCAAACAA
1 GAGGATGAAAGAG-TTTGACTAGGTC-CTAATGCCAATATAGTCAAATGA
* * * ** * * *
3156620 G-GGAT-AAAAAGGTTTGACAAGGTCCCAACACCAATACAATCAAACGA
1 GAGGATGAAAGA-GTTTGACTAGGTCCTAATGCCAATATAGTCAAATGA
* * * ** * *
3156667 -AGGATGAAAAAGTTTGACCAAG-CCTAACACCATTATAGTCAAACGA
1 GAGGATGAAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAATGA
* ** * * *
3156713 -AGGATGGAAAGAGTTTGACTAGGTTCTAACACTAATACAATCAAAT-A
1 GAGGAT-GAAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAATGA
* * * * ** *
3156760 AAGGATGAAAAAGTTTGACCAGGCCCTAATGCCAATGCAATCAAATGA
1 GAGGATGAAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAATGA
3156808 GA-GATGAAA
1 GAGGATGAAA
3156817 AGGCTTAACT
Statistics
Matches: 368, Mismatches: 88, Indels: 50
0.73 0.17 0.10
Matches are distributed among these distances:
45 5 0.01
46 52 0.14
47 234 0.64
48 73 0.20
49 4 0.01
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.21
Consensus pattern (48 bp):
GAGGATGAAAGAGTTTGACTAGGTCCTAATGCCAATATAGTCAAATGA
Found at i:3156670 original size:94 final size:93
Alignment explanation
Indices: 3156470--3156962 Score: 409
Period size: 94 Copynumber: 5.2 Consensus size: 93
3156460 GTCAGTATAG
* * * * *** **
3156470 TCAAAC-AAGGATGAAGAGAGTTTGGCCAGACCCTAATGCCAATGTGGTCAAATGAGGGATGAAA
1 TCAAACAAAGGATGAA-AAAGTTTGACCA-AGCCTAACGCCAATGCAATCAAACAAGGGATGAAA
* * * * *
3156534 AGAGTTTGACTAGGTCCTAATACTAATATAG
64 AG-GTTTGACTAGGTCCCAACACCAATACAA
* * * *
3156565 TCAAACAAAGGATG-AAAAGTTTTGACTAGGCACTAATGCCAATGCAATCAAACAAGGGATAAAA
1 TCAAACAAAGGATGAAAAAG-TTTGACCAAGC-CTAACGCCAATGCAATCAAACAAGGGATGAAA
*
3156629 AGGTTTGACAAGGTCCCAACACCAATACAA
64 AGGTTTGACTAGGTCCCAACACCAATACAA
* * * ** * *
3156659 TCAAACGAAGGATGAAAAAGTTTGACCAAGCCTAACACCATTATAGTCAAACGAA-GGATGGAAA
1 TCAAACAAAGGATGAAAAAGTTTGACCAAGCCTAACGCCAATGCAATCAAAC-AAGGGATGAAAA
* * *
3156723 GAGTTTGACTAGGTTCTAACACTAATACAA
65 G-GTTTGACTAGGTCCCAACACCAATACAA
* * * ** *
3156753 TCAAATAAAGGATGAAAAAGTTTGACCAGGCCCTAATGCCAATGCAATCAAATGAGAGATGAAAA
1 TCAAACAAAGGATGAAAAAGTTTGACCAAG-CCTAACGCCAATGCAATCAAACAAGGGATGAAAA
* * *
3156818 GGCTTAACTAGGTCCCAACACCAATACAG
65 GGTTTGACTAGGTCCCAACACCAATACAA
* * * * * * *
3156847 TTAAACGAAGGATGAAGAAGTTTAACCAAGCTCTAACGCTAATGCAGTCAAATAAGGGATGAAAA
1 TCAAACAAAGGATGAAAAAGTTTGACCAAGC-CTAACGCCAATGCAATCAAACAAGGGATGAAAA
* * *
3156912 AGTTTGATTAGGTCGCAACACCAATACAA
65 GGTTTGACTAGGTCCCAACACCAATACAA
* * *
3156941 GCAAATGAAA-AATGAAAAAGTT
1 TCAAA-CAAAGGATGAAAAAGTT
3156963 GTCTAAAGCT
Statistics
Matches: 314, Mismatches: 74, Indels: 21
0.77 0.18 0.05
Matches are distributed among these distances:
93 24 0.08
94 212 0.68
95 71 0.23
96 7 0.02
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.20
Consensus pattern (93 bp):
TCAAACAAAGGATGAAAAAGTTTGACCAAGCCTAACGCCAATGCAATCAAACAAGGGATGAAAAG
GTTTGACTAGGTCCCAACACCAATACAA
Found at i:3156791 original size:188 final size:189
Alignment explanation
Indices: 3156516--3156945 Score: 528
Period size: 188 Copynumber: 2.3 Consensus size: 189
3156506 TGCCAATGTG
* * * * *
3156516 GTCAAATGAGGGATGAAAAGAGTTTGACTAGGTCCTAATACTAATATAGTCAAACAAAGGATGAA
1 GTCAAACGAAGGATGAAAAGAGTTTGACTAGGTCCTAACACTAATACAATCAAACAAAGGATGAA
* * * *
3156581 AAGTTTTGACTAGGCACTAATGCCAATGCAATCAAACAAGGGATAAAAAGGTTTGACAAGGTCCC
66 AAGTTTTGACCAGGCACTAATGCCAATGCAATCAAACAAGAGATAAAAAGGCTTAACAAGGTCCC
*
3156646 AACACCAATACAATCAAACGAAGGATGAAAAAGTTTGACCAAGC-CTAACACCATTATA
131 AACACCAATACAATCAAACGAAGGATGAAAAAGTTTAACCAAGCTCTAACACCATTATA
* * *
3156704 GTCAAACGAAGGATGGAAAGAGTTTGACTAGGTTCTAACACTAATACAATCAAATAAAGGATGAA
1 GTCAAACGAAGGATGAAAAGAGTTTGACTAGGTCCTAACACTAATACAATCAAACAAAGGATG-A
* ** * *
3156769 AAAG-TTTGACCAGGCCCTAATGCCAATGCAATCAAATGAGAGATGAAAAGGCTTAACTAGGTCC
65 AAAGTTTTGACCAGGCACTAATGCCAATGCAATCAAACAAGAGATAAAAAGGCTTAACAAGGTCC
* * * * * * **
3156833 CAACACCAATACAGTTAAACGAAGGATGAAGAAGTTTAACCAAGCTCTAACGCTAATGCA
130 CAACACCAATACAATCAAACGAAGGATGAAAAAGTTTAACCAAGCTCTAACACCATTATA
* * * *
3156893 GTCAAA-TAAGGGATGAAAA-AGTTTGATTAGGTCGC-AACACCAATACAAGCAAA
1 GTCAAACGAA-GGATGAAAAGAGTTTGACTAGGTC-CTAACACTAATACAATCAAA
3156946 TGAAAAATGA
Statistics
Matches: 206, Mismatches: 32, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
188 177 0.86
189 29 0.14
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.20
Consensus pattern (189 bp):
GTCAAACGAAGGATGAAAAGAGTTTGACTAGGTCCTAACACTAATACAATCAAACAAAGGATGAA
AAGTTTTGACCAGGCACTAATGCCAATGCAATCAAACAAGAGATAAAAAGGCTTAACAAGGTCCC
AACACCAATACAATCAAACGAAGGATGAAAAAGTTTAACCAAGCTCTAACACCATTATA
Found at i:3156817 original size:47 final size:47
Alignment explanation
Indices: 3156413--3156923 Score: 218
Period size: 47 Copynumber: 10.9 Consensus size: 47
3156403 TGGTCTTAAC
* * *
3156413 GCCAATACAGTCAAATGAGAG-TAGAAAGAGTTTGACTAGGTCCTAAT
1 GCCAATACAGTCAAACGAGAGAT-GAAAAAGTTTGACTAGGCCCTAAT
* * * * * * * *
3156460 GTCAGTATAGTCAAACAAG-GATGAAGAGAGTTTGGCCAGACCCTAAT
1 GCCAATACAGTCAAACGAGAGATGAA-AAAGTTTGACTAGGCCCTAAT
*** * * *
3156507 GCCAATGTGGTCAAATGAGGGATGAAAAGAGTTTGACTAGGTCCTAAT
1 GCCAATACAGTCAAACGAGAGATGAAAA-AGTTTGACTAGGCCCTAAT
* * * * *
3156555 ACTAATATAGTCAAAC-AAAGGATG-AAAAGTTTTGACTAGGCACTAAT
1 GCCAATACAGTCAAACGAGA-GATGAAAAAG-TTTGACTAGGCCCTAAT
* * * * * *
3156602 GCCAATGCAATCAAACAAGGGAT-AAAAAGGTTTGACAAGGTCCC-AAC
1 GCCAATACAGTCAAACGAGAGATGAAAAA-GTTTGACTAGG-CCCTAAT
* * * * *
3156649 ACCAATACAATCAAACGA-AGGATGAAAAAGTTTGACCAAG-CCTAAC
1 GCCAATACAGTCAAACGAGA-GATGAAAAAGTTTGACTAGGCCCTAAT
* * * * ** *
3156695 ACCATTATAGTCAAACGA-AGGATGGAAAGAGTTTGACTAGGTTCTAAC
1 GCCAATACAGTCAAACGAGA-GAT-GAAAAAGTTTGACTAGGCCCTAAT
* * * * * *
3156743 ACTAATACAATCAAA-TAAAGGATGAAAAAGTTTGACCAGGCCCTAAT
1 GCCAATACAGTCAAACGAGA-GATGAAAAAGTTTGACTAGGCCCTAAT
* * * * * * *
3156790 GCCAATGCAATCAAATGAGAGATGAAAAGGCTTAACTAGGTCCC-AAC
1 GCCAATACAGTCAAACGAGAGATGAAAAAGTTTGACTAGG-CCCTAAT
* * * * * * * *
3156837 ACCAATACAGTTAAACGA-AGGATGAAGAAGTTTAACCAAGCTCTAAC
1 GCCAATACAGTCAAACGAGA-GATGAAAAAGTTTGACTAGGCCCTAAT
* * ** * *
3156884 GCTAATGCAGTCAAATAAGGGATGAAAAAGTTTGATTAGG
1 GCCAATACAGTCAAACGAGAGATGAAAAAGTTTGACTAGG
3156924 TCGCAACACC
Statistics
Matches: 348, Mismatches: 95, Indels: 42
0.72 0.20 0.09
Matches are distributed among these distances:
45 2 0.01
46 32 0.09
47 243 0.70
48 71 0.20
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.21
Consensus pattern (47 bp):
GCCAATACAGTCAAACGAGAGATGAAAAAGTTTGACTAGGCCCTAAT
Found at i:3157885 original size:16 final size:15
Alignment explanation
Indices: 3157864--3157893 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
3157854 TTTGGCCCAA
3157864 CAAGATCAAGGTTCAT
1 CAAGATCAA-GTTCAT
3157880 CAAGATCAAGTTCA
1 CAAGATCAAGTTCA
3157894 AGAGGATGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (15 bp):
CAAGATCAAGTTCAT
Found at i:3160072 original size:19 final size:19
Alignment explanation
Indices: 3160050--3160087 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
3160040 TTTTACTCTA
3160050 TTTCTTCCT-TTTTATTTCT
1 TTTCTTCCTATTTT-TTTCT
*
3160069 TTTCTTTCTATTTTTTTCT
1 TTTCTTCCTATTTTTTTCT
3160088 CTCTTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTCTTCCTATTTTTTTCT
Found at i:3160085 original size:14 final size:14
Alignment explanation
Indices: 3160046--3160097 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
3160036 AATATTTTAC
* *
3160046 TCTATTTCTTCCTT
1 TCTATTTTTTTCTT
*
3160060 TTTATTTCTTTTCTT
1 TCTATTT-TTTTCTT
*
3160075 TCTATTTTTTTCTC
1 TCTATTTTTTTCTT
3160089 TCT-TTTTTT
1 TCTATTTTTT
3160098 CAGCTAAACC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
13 6 0.19
14 15 0.47
15 11 0.34
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (14 bp):
TCTATTTTTTTCTT
Found at i:3160808 original size:147 final size:147
Alignment explanation
Indices: 3160618--3160904 Score: 337
Period size: 147 Copynumber: 2.0 Consensus size: 147
3160608 ATTTAATACG
* * * * *
3160618 AAATAAATATATTTAATGAATTTAAAAAATTAAGAACCCAGAAAAAT-TCCCTTAATAATATTTA
1 AAATAAATATATTTAATGAATTTAAAAAATTAAAAACCAAGAAAAATCCCCCATAA-AACATTTA
* * ***** * *
3160682 CGGAGTTTTCTACTCCGTATTTCGAAAACAAGAGAATTTCAAGAAAAAAATTCAAAACTTC-TGC
65 CAGAATAAAAAACTCCATATTTCGAAAACAAGAAAATTTCAAGAAAAAAATTCAAAAC-TCATGC
3160746 AAATAAATGAATATGAAAT
129 AAATAAATGAATATGAAAT
* **
3160765 AAATAAAT-TCATTTGATGAATTTTGAAAATTAAAAACCAAGAAAAATCCCCCATAAAACATTTA
1 AAATAAATAT-ATTTAATGAATTTAAAAAATTAAAAACCAAGAAAAATCCCCCATAAAACATTTA
* * * *
3160829 CATAATAAAAAACTTCATATTTCGAAAACAAGAAAATTTCATGGAAAAAATTCAAAACTCATGCA
65 CAGAATAAAAAACTCCATATTTCGAAAACAAGAAAATTTCAAGAAAAAAATTCAAAACTCATGCA
3160894 AATAAATGAAT
130 AATAAATGAAT
3160905 TTTTGAAAAC
Statistics
Matches: 116, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
146 3 0.03
147 107 0.92
148 6 0.05
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.28
Consensus pattern (147 bp):
AAATAAATATATTTAATGAATTTAAAAAATTAAAAACCAAGAAAAATCCCCCATAAAACATTTAC
AGAATAAAAAACTCCATATTTCGAAAACAAGAAAATTTCAAGAAAAAAATTCAAAACTCATGCAA
ATAAATGAATATGAAAT
Found at i:3162420 original size:94 final size:95
Alignment explanation
Indices: 3162330--3162883 Score: 525
Period size: 94 Copynumber: 5.9 Consensus size: 95
3162320 GAAGTCAAAT
* * * *
3162330 AAGGGTGGAAAGAGTTTGACCAGGTCCTAATACAAATATAGTCAAACGAGAG-TGGAAAAGGTTT
1 AAGGATGGAAAGAGTTTGACCAGGCCCTAATACCAATGTAGTCAAACGAGAGAT-GAAAAGGTTT
* ** *
3162394 GATTAGGTCCTAATGCCAATACAGTCAAACG
65 GACTAGGTCCTAACACCAATACAATCAAACG
* * ** * * *
3162425 -TGGATGGAGAGAGTTTGACCAATCCCTAATGCCAATGTAGTCAAATGAGGGATGAAAAGAGTTT
1 AAGGATGGAAAGAGTTTGACCAGGCCCTAATACCAATGTAGTCAAACGAGAGATGAAAAG-GTTT
* *
3162489 GACTAGGTCCCAACACCAATATAATCAAACG
65 GACTAGGTCCTAACACCAATACAATCAAACG
** * * * *
3162520 AAGGATGGAAA-AGTTTGACTTGGCCCTAA-GCCAATGTAGACAAACGACAGATGAAAATGTTTG
1 AAGGATGGAAAGAGTTTGACCAGGCCCTAATACCAATGTAGTCAAACGAGAGATGAAAAGGTTTG
*
3162583 ACCAGGTCCTAACACCAATACAATCAAACG
66 ACTAGGTCCTAACACCAATACAATCAAACG
* * * ** *
3162613 AAGGAT-GAAAAAGTTTGACCAGGCCCTAATACCATTGCAGTCAAATAAGGGATGAAAAGAGTTT
1 AAGGATGGAAAGAGTTTGACCAGGCCCTAATACCAATGTAGTCAAACGAGAGATGAAAAG-GTTT
* *
3162677 GACTAGGTCCTAACACTAATACAGTCAAACG
65 GACTAGGTCCTAACACCAATACAATCAAACG
* * * * * * * *
3162708 AAAGAT-GAAAAAGTTTAACTATGCCCTAATGCCAATGCAATCAAACGA-AGGATGAAAAGGTTT
1 AAGGATGGAAAGAGTTTGACCAGGCCCTAATACCAATGTAGTCAAACGAGA-GATGAAAAGGTTT
* * * *
3162771 GACCAAGTCCCAATACCAATACAATCAAACG
65 GACTAGGTCCTAACACCAATACAATCAAACG
* * * * * * * *
3162802 AAGGAT-GAAAAAATTTGACCAGG--CTAATGCCAATGCAGCCAAACGAGGGATGAAAAAGTTTA
1 AAGGATGGAAAGAGTTTGACCAGGCCCTAATACCAATGTAGTCAAACGAGAGATGAAAAGGTTTG
*
3162864 ACTAGGTCTTAACACCAATA
66 ACTAGGTCCTAACACCAATA
3162884 TAGTCAAATG
Statistics
Matches: 375, Mismatches: 76, Indels: 19
0.80 0.16 0.04
Matches are distributed among these distances:
92 52 0.14
93 54 0.14
94 137 0.37
95 124 0.33
96 8 0.02
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21
Consensus pattern (95 bp):
AAGGATGGAAAGAGTTTGACCAGGCCCTAATACCAATGTAGTCAAACGAGAGATGAAAAGGTTTG
ACTAGGTCCTAACACCAATACAATCAAACG
Found at i:3162566 original size:188 final size:187
Alignment explanation
Indices: 3162238--3162913 Score: 622
Period size: 188 Copynumber: 3.6 Consensus size: 187
3162228 ACGTCAAATG
*** * ** * *
3162238 AGGATGAAAACAGTTTGACCAGGACTAATGCCAATACAGTCAAACAAAGG-TGAGAAGAGTTTGA
1 AGGATGAAAA-AGTTTGACCAACCCTAATGCCAATGCAGTCAAATGAGGGATGAAAAGAGTTTGA
* * **** * * * * * * *
3162302 CCAAGTCCTAACGTTGATGA-AGTCAAA-TAAGGGTGGAAAGAGTTTGACCAGGTCCTAATACAA
65 CTAGGTCCTAACACCAAT-ATAGTCAAACGAAGGATGGAAA-AGTTTGACTATGCCCTAATGCCA
** * ** * *
3162365 ATATAGTCAAACGAGAGTGGAAAAGGTTTGATTAGGTCCTAATGCCAATACAGTCAAACG-
128 ATGCAATCAAACGA-AGTGGAAAAGGTTTGACCAGGTCCTAATACCAATACAATCAAACGA
* * * *
3162425 TGGATGGAGAGAGTTTGACCAATCCCTAATGCCAATGTAGTCAAATGAGGGATGAAAAGAGTTTG
1 AGGAT-GAAAAAGTTTGACCAA-CCCTAATGCCAATGCAGTCAAATGAGGGATGAAAAGAGTTTG
* *
3162490 ACTAGGTCCCAACACCAATATAATCAAACGAAGGATGGAAAAGTTTGACT-TGGCCCTAA-GCCA
64 ACTAGGTCCTAACACCAATATAGTCAAACGAAGGATGGAAAAGTTTGACTAT-GCCCTAATGCCA
* * *
3162553 ATGTAGA-CAAACGACAGAT-GAAAATGTTTGACCAGGTCCTAACACCAATACAATCAAACGA
128 ATGCA-ATCAAACGA-AG-TGGAAAAGGTTTGACCAGGTCCTAATACCAATACAATCAAACGA
* * * *
3162614 AGGATGAAAAAGTTTGACCAGGCCCTAATACCATTGCAGTCAAATAAGGGATGAAAAGAGTTTGA
1 AGGATGAAAAAGTTTGACCA-ACCCTAATGCCAATGCAGTCAAATGAGGGATGAAAAGAGTTTGA
* * * * *
3162679 CTAGGTCCTAACACTAATACAGTCAAACGAAAGATGAAAAAGTTTAACTATGCCCTAATGCCAAT
65 CTAGGTCCTAACACCAATATAGTCAAACGAAGGATGGAAAAGTTTGACTATGCCCTAATGCCAAT
* *
3162744 GCAATCAAACGAAG-GATGAAAAGGTTTGACCAAGTCCCAATACCAATACAATCAAACGA
130 GCAATCAAACGAAGTG--GAAAAGGTTTGACCAGGTCCTAATACCAATACAATCAAACGA
* ** * * *
3162803 AGGATGAAAAAATTTGACC-AGGCTAATGCCAATGCAGCCAAACGAGGGATGAAAA-AGTTTAAC
1 AGGATGAAAAAGTTTGACCAACCCTAATGCCAATGCAGTCAAATGAGGGATGAAAAGAGTTTGAC
* * *
3162866 TAGGTCTTAACACCAATATAGTCAAATGAAGAAT-GAAAA-TGTTGACTA
66 TAGGTCCTAACACCAATATAGTCAAACGAAGGATGGAAAAGT-TTGACTA
3162914 AGGCTAATCC
Statistics
Matches: 398, Mismatches: 74, Indels: 36
0.78 0.15 0.07
Matches are distributed among these distances:
184 1 0.00
185 10 0.03
186 35 0.09
187 42 0.11
188 179 0.45
189 121 0.30
190 10 0.03
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (187 bp):
AGGATGAAAAAGTTTGACCAACCCTAATGCCAATGCAGTCAAATGAGGGATGAAAAGAGTTTGAC
TAGGTCCTAACACCAATATAGTCAAACGAAGGATGGAAAAGTTTGACTATGCCCTAATGCCAATG
CAATCAAACGAAGTGGAAAAGGTTTGACCAGGTCCTAATACCAATACAATCAAACGA
Found at i:3162625 original size:142 final size:140
Alignment explanation
Indices: 3162465--3162904 Score: 460
Period size: 142 Copynumber: 3.1 Consensus size: 140
3162455 GCCAATGTAG
* * * * * *
3162465 TCAAATGAGGGATGAAAAGAGTTTGACTAGGTCCCAACACCAATATAATCAAACGAAGGATGGAA
1 TCAAACGAAGGATGAAAAGAGTTTGACCAGGTCCCAATACCAATACAATCAAACGAAGGATGAAA
* * * * * *
3162530 AAGTTTGACTTGGCCCTAAGCCAATGTAGACAAACGACAGATGAAAATGTTTGACCAGGTCCTAA
66 AAGTTTGACTAGG-CCTAAGCCAATGCAGACAAACGAAAGATGAAAAAGTTTAACTAGGTCCTAA
3162595 CACCAATACAA
130 CACCAATACAA
* * * *
3162606 TCAAACGAAGGATGAAAA-AGTTTGACCAGG-CCCTAATACCATTGCAGTCAAA-TAAGGGATGA
1 TCAAACGAAGGATGAAAAGAGTTTGACCAGGTCCC-AATACCAATACAATCAAACGAA-GGATGA
* * * *
3162668 AAAGAGTTTGACTAGGTCCTAA-CACTAATACAGTCAAACGAAAGATGAAAAAGTTTAACTATGC
64 AAA-AGTTTGACTAGG-CCTAAGC-C-AATGCAGACAAACGAAAGATGAAAAAGTTTAACTAGGT
** *
3162732 CCTAATGCCAATGCAA
125 CCTAACACCAATACAA
*
3162748 TCAAACGAAGGATGAAAAG-GTTTGACCAAGTCCCAATACCAATACAATCAAACGAAGGATGAAA
1 TCAAACGAAGGATGAAAAGAGTTTGACCAGGTCCCAATACCAATACAATCAAACGAAGGATGAAA
* * * ** *
3162812 AAATTTGACCAGG-CTAATGCCAATGCAGCCAAACGAGGGATGAAAAAGTTTAACTAGGTCTTAA
66 AAGTTTGACTAGGCCTAA-GCCAATGCAGACAAACGAAAGATGAAAAAGTTTAACTAGGTCCTAA
* *
3162876 CACCAATATAG
130 CACCAATACAA
* *
3162887 TCAAATGAAGAATGAAAA
1 TCAAACGAAGGATGAAAA
3162905 TGTTGACTAA
Statistics
Matches: 244, Mismatches: 45, Indels: 22
0.78 0.14 0.07
Matches are distributed among these distances:
139 67 0.27
140 34 0.14
141 44 0.18
142 94 0.39
143 5 0.02
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.20
Consensus pattern (140 bp):
TCAAACGAAGGATGAAAAGAGTTTGACCAGGTCCCAATACCAATACAATCAAACGAAGGATGAAA
AAGTTTGACTAGGCCTAAGCCAATGCAGACAAACGAAAGATGAAAAAGTTTAACTAGGTCCTAAC
ACCAATACAA
Found at i:3162902 original size:47 final size:47
Alignment explanation
Indices: 3162230--3162913 Score: 417
Period size: 47 Copynumber: 14.6 Consensus size: 47
3162220 GAACCATCAC
* * * **
3162230 GTCAAATG-AGGATGAAAACAGTTTGACCAGG-ACTAATGCCAATACA
1 GTCAAACGAAGGATGAAAA-AGTTTGACTAGGTCCTAACACCAATACA
* * * * ****
3162276 GTCAAACAAAGG-TGAGAAGAGTTTGACCAAGTCCTAACGTTGATGA-A
1 GTCAAACGAAGGATGA-AAAAGTTTGACTAGGTCCTAACACCAAT-ACA
* * * * * * *
3162323 GTCAAA-TAAGGGTGGAAAGAGTTTGACCAGGTCCTAATACAAATATA
1 GTCAAACGAAGGAT-GAAAAAGTTTGACTAGGTCCTAACACCAATACA
* * **
3162370 GTCAAACG-A-GAGTGGAAAAGGTTTGATTAGGTCCTAATGCCAATACA
1 GTCAAACGAAGGA-T-GAAAAAGTTTGACTAGGTCCTAACACCAATACA
* * * * * ** **
3162417 GTCAAACG-TGGATGGAGAGAGTTTGACCA-ATCCCTAATGCCAATGTA
1 GTCAAACGAAGGAT-GAAAAAGTTTGACTAGGT-CCTAACACCAATACA
* * * *
3162464 GTCAAATGAGGGATGAAAAGAGTTTGACTAGGTCCCAACACCAATATA
1 GTCAAACGAAGGATGAAAA-AGTTTGACTAGGTCCTAACACCAATACA
* * * * * **
3162512 ATCAAACGAAGGATGGAAAAGTTTGACTTGGCCCTAA-GCCAATGTA
1 GTCAAACGAAGGATGAAAAAGTTTGACTAGGTCCTAACACCAATACA
* * *
3162558 GACAAACGACA-GATGAAAATGTTTGACCAGGTCCTAACACCAATACA
1 GTCAAACGA-AGGATGAAAAAGTTTGACTAGGTCCTAACACCAATACA
* * * * * *
3162605 ATCAAACGAAGGATGAAAAAGTTTGACCAGGCCCTAATACCATTGCA
1 GTCAAACGAAGGATGAAAAAGTTTGACTAGGTCCTAACACCAATACA
* *
3162652 GTCAAA-TAAGGGATGAAAAGAGTTTGACTAGGTCCTAACACTAATACA
1 GTCAAACGAA-GGATGAAAA-AGTTTGACTAGGTCCTAACACCAATACA
* * * * ** *
3162700 GTCAAACGAAAGATGAAAAAGTTTAACTATGCCCTAATGCCAATGCA
1 GTCAAACGAAGGATGAAAAAGTTTGACTAGGTCCTAACACCAATACA
* * * * * *
3162747 ATCAAACGAAGGATGAAAAGGTTTGACCAAGTCCCAATACCAATACA
1 GTCAAACGAAGGATGAAAAAGTTTGACTAGGTCCTAACACCAATACA
* * * ** *
3162794 ATCAAACGAAGGATGAAAAAATTTGACCAGG--CTAATGCCAATGCA
1 GTCAAACGAAGGATGAAAAAGTTTGACTAGGTCCTAACACCAATACA
* * * * *
3162839 GCCAAACGAGGGATGAAAAAGTTTAACTAGGTCTTAACACCAATATA
1 GTCAAACGAAGGATGAAAAAGTTTGACTAGGTCCTAACACCAATACA
* * *
3162886 GTCAAATGAAGAATGAAAATG-TTGACTA
1 GTCAAACGAAGGATGAAAAAGTTTGACTA
3162914 AGGCTAATCC
Statistics
Matches: 496, Mismatches: 120, Indels: 44
0.75 0.18 0.07
Matches are distributed among these distances:
45 36 0.07
46 71 0.14
47 306 0.62
48 80 0.16
49 3 0.01
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.21
Consensus pattern (47 bp):
GTCAAACGAAGGATGAAAAAGTTTGACTAGGTCCTAACACCAATACA
Found at i:3165474 original size:16 final size:17
Alignment explanation
Indices: 3165453--3165486 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
3165443 AACATTTGGG
3165453 TACAAAA-ATTTAAGGT
1 TACAAAAGATTTAAGGT
*
3165469 TACAAAAGGTTTAAGGT
1 TACAAAAGATTTAAGGT
3165486 T
1 T
3165487 GAAAGTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.32
Consensus pattern (17 bp):
TACAAAAGATTTAAGGT
Found at i:3169921 original size:13 final size:13
Alignment explanation
Indices: 3169903--3169927 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3169893 ACATGAGTGT
3169903 TGTATCGATACAA
1 TGTATCGATACAA
3169916 TGTATCGATACA
1 TGTATCGATACA
3169928 GAGCTACCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3171941 original size:21 final size:21
Alignment explanation
Indices: 3171899--3171958 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
3171889 GAATTAGAGG
3171899 AGAAAATGAATGAGTTAGAAA
1 AGAAAATGAATGAGTTAGAAA
3171920 AGAAAA-GAAATGAGTT-GCAAA
1 AGAAAATG-AATGAGTTAG-AAA
3171941 ATGAAAATG-ATGAGTTAG
1 A-GAAAATGAATGAGTTAG
3171959 CTAATAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
20 2 0.06
21 25 0.74
22 6 0.18
23 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.25, T:0.20
Consensus pattern (21 bp):
AGAAAATGAATGAGTTAGAAA
Found at i:3174381 original size:13 final size:13
Alignment explanation
Indices: 3174363--3174387 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3174353 ACATGAGTGT
3174363 TGTATCGATACAA
1 TGTATCGATACAA
3174376 TGTATCGATACA
1 TGTATCGATACA
3174388 GAGCTACCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3174438 original size:20 final size:20
Alignment explanation
Indices: 3174413--3174450 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
3174403 CTGCCAAGCA
*
3174413 AATGTATCGATACATTATTC
1 AATGTATCAATACATTATTC
3174433 AATGTATCAATACATTAT
1 AATGTATCAATACATTAT
3174451 ATCGATACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.39
Consensus pattern (20 bp):
AATGTATCAATACATTATTC
Found at i:3175696 original size:13 final size:13
Alignment explanation
Indices: 3175678--3175702 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3175668 ATTTTGCTTA
3175678 GTATCGATACATT
1 GTATCGATACATT
3175691 GTATCGATACAT
1 GTATCGATACAT
3175703 AAACTAACAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:3175844 original size:14 final size:14
Alignment explanation
Indices: 3175825--3175880 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
3175815 TTCATAACTG
3175825 TTCATGTATCACTA
1 TTCATGTATCACTA
3175839 TTCATGTATCGA-TAA
1 TTCATGTATC-ACT-A
*
3175854 ATCACTGTTTATCACTA
1 TTCA-TG--TATCACTA
3175871 TTCATGTATC
1 TTCATGTATC
3175881 GATACATTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
14 15 0.44
15 5 0.15
16 4 0.12
17 5 0.15
18 5 0.15
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.43
Consensus pattern (14 bp):
TTCATGTATCACTA
Found at i:3190628 original size:475 final size:475
Alignment explanation
Indices: 3189727--3191750 Score: 2788
Period size: 475 Copynumber: 4.2 Consensus size: 475
3189717 CTCAAATGAG
* *
3189727 ACTTTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAA
1 ACTTTGGTTTCGCAAGATAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
*
3189792 ATGAGACAAACATGGATTCTAGTAACGAACTTCATTCATTTTGTGATTAGGCACTATAAACACAT
66 ATGAGACAAACATGGATTCTAGTAATGAACTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * *
3189857 TCTCCTCATAAGAATAAATGATATTGATGATTTTTTTTGCATGGAAATCGATTCATTGCCTTATT
131 TCTCCTCATAAGGATAAATGATATTGATGATTTTTTTTGCATGGAAATCTATTCTTTGCCCTATT
* *
3189922 TTCCTTAAAATCAAAATTCATCCCTTAAATATGACAAGCATCGATTCTTGTAACAATCTCCATAT
196 TTCCTTAAAATCAAAATTCATACCTTAAATATGACAAGCATCGATTCTTGAAACAATCTCCAT-T
* * **
3189987 -TTTTCAAGGTTGGGAACCAAGAACATATTCTTTTCATTAGGATACAAGACATTGATGCTTTGGT
260 CTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGT
* * *
3190051 CTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGACAGAATCAAAGTTT-TCCTCTTAAATAAGA
325 CTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGA
* * * * *
3190115 TAAATATGAATAGTCATATTAATCCCTATT-TATTTTAGGGTTTGGCACCATAAACATAGTCTTC
389 CAAATATGAATAGTCATATTAATCCCCATTCT-TTTCAGGATTAGGCACCATAAACATAGTCTTC
3190179 TCATAAGGATACACGATATTGAC
453 TCATAAGGATACACGATATTGAC
* * *
3190202 ACTTTGTTTTCGCAAGATAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGTCTTAA
1 ACTTTGGTTTCGCAAGATAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* * * * *
3190267 ATGAGACAAACATAGATTCTAGTAATGATCTTCATTCCTTTTGTGATTAGACACTATAAACACTT
66 ATGAGACAAACATGGATTCTAGTAATGAACTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * *
3190332 TCTCCTCATCAGGACAAATGATATTGAT-TTTTTTTTTGCATGGGAATCTATTCTTTGCCCTATT
131 TCTCCTCATAAGGATAAATGATATTGATGATTTTTTTTGCATGGAAATCTATTCTTTGCCCTATT
* * *
3190396 TTCCTTAAAATCAAAATTCATACCATAAATAT-ACGAAGCATTGACTCTTGAAACAATCTCCATT
196 TTCCTTAAAATCAAAATTCATACCTTAAATATGAC-AAGCATCGATTCTTGAAACAATCTCCATT
* * *
3190460 TTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACATGACATTGATGCTCTGGT
260 CTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGT
* * * *
3190525 GTCACAAGAAATGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCATTAAATAAGA
325 CTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC-TTAAATAAGA
* * * ** * *
3190590 CAAAAATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGTGCCATAAACGTAGTCTTTT
389 CAAATATGAATAGTCATATTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* *
3190655 CATAAGGATGCATGATATTGAC
454 CATAAGGATACACGATATTGAC
* * *
3190677 ACTTTGGTTTCGCAAAAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCTTGCCTCAA
1 ACTTTGGTTTCGCAAGATAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* ** *
3190742 ATGAGATAAACATGGGCTCTAGTAATGAACTTCATTCATTTTGTGATTCGGCACTATAAACACAT
66 ATGAGACAAACATGGATTCTAGTAATGAACTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* *
3190807 TCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTGCGTGGAAATCTATTCTTTGCCCTATT
131 TCTCCTCATAAGGATAAATGATATTGATGATTTTTTTTGCATGGAAATCTATTCTTTGCCCTATT
* * * *
3190872 TTCCTTAAAATCAAAATTCATCCCTTCAATATGACAAGCATCGATTCTTGTAACAGTCTCCA-TC
196 TTCCTTAAAATCAAAATTCATACCTTAAATATGACAAGCATCGATTCTTGAAACAATCTCCATTC
* * * *
3190936 TTTTCAAGATTGGGAATCAAAAACAGATTCCCTTCACTAGGATACAAGACATTGATGCTTTGGTC
261 TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTC
* * * *
3191001 TCGCAAGAAAAGCTTTTCTTTTCATCATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACA
326 TCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * * * ** * *
3191066 AATATGAATTGTCATATTAATCCCTATTCATTTCAAGATTAGGTGCCATAAACATACTCTTCCCA
391 AATATGAATAGTCATATTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
3191131 TAAGGATACACGATATTGAC
456 TAAGGATACACGATATTGAC
*
3191151 GCTTTGGTTTCGCAAGATAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
1 ACTTTGGTTTCGCAAGATAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
** * *
3191216 ATGAGACAAACATGGATTCTAGTAACAAACTTCATTCTTTTTGTGATTAGGCACCATAAACACAT
66 ATGAGACAAACATGGATTCTAGTAATGAACTTCATTCATTTTGTGATTAGGCACTATAAACACAT
* * * * *
3191281 TCTCCTCATGAGGATAAATTATATTCATAATGTTTCTTTTTTTTTTGCATGGGAATCTATTCTTT
131 TCTCCTCATAAGGATAAATGATA-T--TGATG-----ATTTTTTTTGCATGGAAATCTATTCTTT
* * * *
3191346 GCCCTATTTTCCTTAAAATCAAAATTCAAACCTTAAATATGACAAACATCGATTCTT-ATAATAG
188 GCCCTATTTTCCTTAAAATCAAAATTCATACCTTAAATATGACAAGCATCGATTCTTGA-AACAA
* * * *
3191410 TCTCCATTCTTTTCAAGATTGGGAACTAAGAACACATTCCCTTCGTTAGGAGACAAGACATTAAT
252 TCTCCATTCTTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACATTGAT
* * * * **
3191475 GCTTTGGTGTCACAACAAAATCTTTT-TTTCCATCATTTAAGATAGAATCAAAGTTTGTCTCTTA
317 GCTTTGGTCTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* ** * **
3191539 AATAAAACAAATATGAATAGTCATATTAATCTTCATTCTTTCCAGGATTAGGCATTATAAACATA
382 AATAAGACAAATATGAATAGTCATATTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATA
* * *
3191604 GTCCTCTCATATGGATACATGATATTGAC
447 GTCTTCTCATAAGGATACACGATATTGAC
* * *
3191633 GCTTTGGTTTCGCAAGATAGGCTTTCTTCCCACCTATTTTTGTAAAG-CGTAAGTTCGTGCCCCA
1 ACTTTGGTTTCGCAAGATAGGCTTTCTTCCCACCAATTTTTGTAAAGTC-TAAGTTCGTGCCTCA
*
3191697 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
65 AATGAGACAAACATGGATTCTAGTAATGAACTTCATTCATTTTGTGATTAGGCA
3191751 ATATTCATGA
Statistics
Matches: 1365, Mismatches: 166, Indels: 29
0.88 0.11 0.02
Matches are distributed among these distances:
473 3 0.00
474 413 0.30
475 475 0.35
476 86 0.06
477 6 0.00
481 1 0.00
482 309 0.23
483 72 0.05
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
ACTTTGGTTTCGCAAGATAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
ATGAGACAAACATGGATTCTAGTAATGAACTTCATTCATTTTGTGATTAGGCACTATAAACACAT
TCTCCTCATAAGGATAAATGATATTGATGATTTTTTTTGCATGGAAATCTATTCTTTGCCCTATT
TTCCTTAAAATCAAAATTCATACCTTAAATATGACAAGCATCGATTCTTGAAACAATCTCCATTC
TTTTCAAGATTGGGAACCAAGAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTC
TCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
AATATGAATAGTCATATTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCA
TAAGGATACACGATATTGAC
Found at i:3193645 original size:13 final size:13
Alignment explanation
Indices: 3193627--3193657 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3193617 ACATTTCTTC
3193627 ATGTATCGATACA
1 ATGTATCGATACA
3193640 ATGTATCGATACA
1 ATGTATCGATACA
*
3193653 TTGTA
1 ATGTA
3193658 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3193652 original size:33 final size:33
Alignment explanation
Indices: 3193610--3193673 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 33
3193600 ACAAGCTATT
3193610 TATCAATACATT-T-CTTCATGTATCGATACAATG
1 TATCAATACATTGTAC--CATGTATCGATACAATG
*
3193643 TATCGATACATTGTACCATGTATCGATACAA
1 TATCAATACATTGTACCATGTATCGATACAA
3193674 ATAGTGATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (33 bp):
TATCAATACATTGTACCATGTATCGATACAATG
Found at i:3193727 original size:20 final size:20
Alignment explanation
Indices: 3193702--3193756 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
3193692 CTGCCAGTTT
* **
3193702 CATGTATCGATACAATTGTC
1 CATGTATTGATACAATTGAA
*
3193722 CATGTATTGATATAA-TGAA
1 CATGTATTGATACAATTGAA
3193741 CATGTATTGATACAAT
1 CATGTATTGATACAAT
3193757 GTATCGATAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (20 bp):
CATGTATTGATACAATTGAA
Found at i:3194357 original size:22 final size:22
Alignment explanation
Indices: 3194338--3194382 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
3194328 CCCTTAAACG
*
3194338 ATTATCTCCTCCTTTATAAAAA
1 ATTATCTCCCCCTTTATAAAAA
*
3194360 ATTTTCTCCCCCTTTATAAAAA
1 ATTATCTCCCCCTTTATAAAAA
3194382 A
1 A
3194383 ATTTATTTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.24, G:0.00, T:0.40
Consensus pattern (22 bp):
ATTATCTCCCCCTTTATAAAAA
Found at i:3202337 original size:13 final size:13
Alignment explanation
Indices: 3202319--3202343 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3202309 TTCTTCATGT
3202319 ATCGATACATTGG
1 ATCGATACATTGG
3202332 ATCGATACATTG
1 ATCGATACATTG
3202344 TACCATGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
ATCGATACATTGG
Found at i:3202415 original size:20 final size:18
Alignment explanation
Indices: 3202390--3202465 Score: 80
Period size: 20 Copynumber: 3.9 Consensus size: 18
3202380 CTGCCAGTTT
3202390 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TG-C
*
3202410 CATGTATCGATACAATGAA
1 CATGTATCGATACAATG-C
* *
3202429 CATGTATTGATACAAAGC
1 CATGTATCGATACAATGC
3202447 AGCATGTATCGATACAATG
1 --CATGTATCGATACAATG
3202466 TATCAATACA
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
19 17 0.36
20 30 0.64
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (18 bp):
CATGTATCGATACAATGC
Found at i:3203511 original size:40 final size:40
Alignment explanation
Indices: 3203456--3203535 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
3203446 TATGGGGATG
*
3203456 AATATCGATACATTCTTCATTATATCAATGCATTCTGGGT
1 AATATCGATACATTCTTCATTATATCAATACATTCTGGGT
* *
3203496 AATATCGATACATTCTTCATTGTATCGATACATTCTGGGT
1 AATATCGATACATTCTTCATTATATCAATACATTCTGGGT
3203536 TTTGCCTAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (40 bp):
AATATCGATACATTCTTCATTATATCAATACATTCTGGGT
Found at i:3203521 original size:20 final size:20
Alignment explanation
Indices: 3203457--3203531 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
3203447 ATGGGGATGA
3203457 ATATCGATACATTCTTCATT
1 ATATCGATACATTCTTCATT
* * *** *
3203477 ATATCAATGCATTCTGGGTA
1 ATATCGATACATTCTTCATT
3203497 ATATCGATACATTCTTCATT
1 ATATCGATACATTCTTCATT
*
3203517 GTATCGATACATTCT
1 ATATCGATACATTCT
3203532 GGGTTTTGCC
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.41
Consensus pattern (20 bp):
ATATCGATACATTCTTCATT
Found at i:3203585 original size:50 final size:49
Alignment explanation
Indices: 3203498--3203629 Score: 165
Period size: 50 Copynumber: 2.6 Consensus size: 49
3203488 TTCTGGGTAA
* * * *
3203498 TATCGATACATTCTTCATTGTATCGATACATTCTGGGTTTTGCCTAGATG
1 TATCGATACATT-TTCATTGTATCGATACATTATGGGTTTTACCCAAATG
* * *
3203548 TATCAATACATTATTCATTGTATCGTTGCATTATGGGTTTTACCCAAATG
1 TATCGATACATT-TTCATTGTATCGATACATTATGGGTTTTACCCAAATG
*
3203598 TATCGATACATTTCTCAATGTATCGATACATT
1 TATCGATACATTT-TCATTGTATCGATACATT
3203630 CAGGCATTTT
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
49 1 0.01
50 68 0.99
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (49 bp):
TATCGATACATTTTCATTGTATCGATACATTATGGGTTTTACCCAAATG
Found at i:3204148 original size:167 final size:168
Alignment explanation
Indices: 3203707--3204333 Score: 669
Period size: 167 Copynumber: 3.7 Consensus size: 168
3203697 CACATGTTTT
* **
3203707 GCACTTTATTTCCTTCTCTCCA-TTGTCCTCAAAGAGCAGGACACACTTTATTTCCCCA-TTTCC
1 GCACTTTATTTCCTTCTCTCCATTTGTCCTCAAAGAGCAGGACACACTTCATTTCCTTATTTTCC
* * ** * * * * *
3203770 TTTGTCTTCAAAGAGTAGGACACCTTTTCCTTTTTTCCTTTATCCTTAAAAAGGAGAACACATTT
66 TTTGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACATTT
* *
3203835 CATTTCCTTCTTTTCCTTTTTATCCTCAAAGAGCAGGAC
131 CATTTACTTCTTTTCC-TTTTGTCCTCAAAGAGCAGGAC
* * *
3203874 GCACTTTATTTCCTAT-T-TCC-TTTGTCCTCAAAGAGTAGGACACACCTCATTTCCTTCTTTTC
1 GCACTTTATTTCCT-TCTCTCCATTTGTCCTCAAAGAGCAGGACACACTTCATTTCCTTATTTT-
* *
3203936 CCTTAGTCCTCAAAGAGCAGGATGCATTTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACAT
64 CCTTTGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACAT
* *
3204001 TTCATTTTCTTCTTTTTCC-TTTGTCCTCAAAGAGCAGGAT
129 TTCATTTACTTC-TTTTCCTTTTGTCCTCAAAGAGCAGGAC
* * **
3204041 GCACTTTATTTCCTTTTCTCCATTAG-CCTCAAAGAGCAGGATGCACTTCATTTCCTTATTTTCC
1 GCACTTTATTTCCTTCTCTCCATTTGTCCTCAAAGAGCAGGACACACTTCATTTCCTTATTTTCC
* ** * * * *
3204105 TTTGTCCTTAAAGAGTGGGATGCCTTTTCCTTTTTTTCTTTGTCTTCAAAGAGTAGGATATATTT
66 TTTGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACATTT
* * * *
3204170 CATTTACTTATTTTCCATTTGTCCCCAAAGAGCAGAAC
131 CATTTACTTCTTTTCCTTTTGTCCTCAAAGAGCAGGAC
* * * * ** * * * * *
3204208 GCATTTTATTTCCTTCTCT-CTTTTGTCCTTAAAAAATAAGACGCACTTCTTTTCCTTCTTCTCC
1 GCACTTTATTTCCTTCTCTCCATTTGTCCTCAAAGAGCAGGACACACTTCATTTCCTTATTTTCC
* * *
3204272 TTTGTCCTCAAAGAGCAGGATGCATTTCATTTCC-TTTCTCCTTTGTCCTCGAAGAGTAGGAC
66 TTTGTCCTCAAAGAGCAGGATGC----CTTTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGAC
3204334 GCACTCTTTC
Statistics
Matches: 384, Mismatches: 62, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
166 44 0.11
167 202 0.53
168 100 0.26
169 9 0.02
170 23 0.06
171 6 0.02
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.41
Consensus pattern (168 bp):
GCACTTTATTTCCTTCTCTCCATTTGTCCTCAAAGAGCAGGACACACTTCATTTCCTTATTTTCC
TTTGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACATTT
CATTTACTTCTTTTCCTTTTGTCCTCAAAGAGCAGGAC
Found at i:3204199 original size:44 final size:42
Alignment explanation
Indices: 3203714--3204410 Score: 382
Period size: 42 Copynumber: 16.8 Consensus size: 42
3203704 TTTGCACTTT
* * * * *
3203714 ATTTCCTTCTCTCCATTGTCCTCAAAGAGCAGGACACACTTT-
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGATACA-TTTC
*** * *
3203756 ATTTCCCCATTTCCTTTGTCTTCAAAGAGTAGG--ACA--CC
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGATACATTTC
* * * * * * *
3203794 TTTTCCTTTTTTCCTTTATCCTTAAAAAGGAGAACACATTTC
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGATACATTTC
* * **
3203836 ATTTCCTTCTTTTCCTTTTTATCCTCAAAGAGCAGGACGCACTTT-
1 ATTTCCTT-TTTTCC--TTTGTCCTCAAAGAGTAGGATACA-TTTC
* * **
3203881 ATTTCC-TATTTCCTTTGTCCTCAAAGAGTAGGACACACCTC
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGATACATTTC
* * *
3203922 ATTTCCTTCTTTTCCCTTAGTCCTCAAAGAGCAGGATGCA--T-
1 ATTTCCTT-TTTT-CCTTTGTCCTCAAAGAGTAGGATACATTTC
*
3203963 -TTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACATTTC
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGATACATTTC
* * *
3204004 ATTTTCTTCTTTTTCCTTTGTCCTCAAAGAGCAGGATGCACTTT-
1 A-TTTCCT-TTTTTCCTTTGTCCTCAAAGAGTAGGATACA-TTTC
* * * * *
3204048 ATTTCCTTTTCTCCATTAG-CCTCAAAGAGCAGGATGCACTTC
1 ATTTCCTTTTTTCC-TTTGTCCTCAAAGAGTAGGATACATTTC
* * *
3204090 ATTTCCTTATTTTCCTTTGTCCTTAAAGAGTGGGATGC----C
1 ATTTCCTT-TTTTCCTTTGTCCTCAAAGAGTAGGATACATTTC
* * * *
3204129 TTTTCCTTTTTTTCTTTGTCTTCAAAGAGTAGGATATATTTC
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGATACATTTC
* * * * ** *
3204171 ATTTACTTATTTTCCATTTGTCCCCAAAGAGCAGAACGCATTTT
1 ATTTCCTT-TTTTCC-TTTGTCCTCAAAGAGTAGGATACATTTC
* * * * * * * ** *
3204215 ATTTCCTTCTCTCTTTTGTCCTTAAAAAATAAGACGCACTTC
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGATACATTTC
* * * *
3204257 TTTTCCTTCTTCTCCTTTGTCCTCAAAGAGCAGGATGCATTTC
1 ATTTCCTT-TTTTCCTTTGTCCTCAAAGAGTAGGATACATTTC
* * *
3204300 ATTTCC-TTTCTCCTTTGTCCTCGAAGAGTAGG--AC---GC
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGATACATTTC
* * * * * **
3204336 A-CT-CTTTCTCCCTTTATCCTCAAAGAGCAGGACGCATTTC
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGATACATTTC
* * *
3204376 ATTTCTTTTTTTTCTTTGTCCTCGAAGAGTAGGAT
1 ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGAT
3204411 GCACTCTTTT
Statistics
Matches: 499, Mismatches: 117, Indels: 78
0.72 0.17 0.11
Matches are distributed among these distances:
34 1 0.00
35 21 0.04
36 2 0.00
37 1 0.00
38 68 0.14
39 13 0.03
40 17 0.03
41 53 0.11
42 128 0.26
43 85 0.17
44 79 0.16
45 28 0.06
46 3 0.01
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (42 bp):
ATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGATACATTTC
Found at i:3204252 original size:42 final size:42
Alignment explanation
Indices: 3204206--3204321 Score: 119
Period size: 43 Copynumber: 2.8 Consensus size: 42
3204196 AAAGAGCAGA
* * *
3204206 ACGCATTTTATTTCCTTCTCTCTTTTGTCCTTAAAAAATAAG
1 ACGCATTTTATTTCCTTCTCTCCTTTGTCCTCAAAAAACAAG
* * * *
3204248 ACGCACTTCT-TTTCCTTCTTCTCCTTTGTCCTCAAAGAGCAGG
1 ACGCA-TTTTATTTCCTTC-TCTCCTTTGTCCTCAAAAAACAAG
* *
3204291 ATGCATTTCATTTCCTT-TCTCCTTTGTCCTC
1 ACGCATTTTATTTCCTTCTCTCCTTTGTCCTC
3204322 GAAGAGTAGG
Statistics
Matches: 61, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
41 14 0.23
42 15 0.25
43 32 0.52
ACGTcount: A:0.18, C:0.28, G:0.09, T:0.44
Consensus pattern (42 bp):
ACGCATTTTATTTCCTTCTCTCCTTTGTCCTCAAAAAACAAG
Found at i:3204281 original size:334 final size:335
Alignment explanation
Indices: 3203706--3204333 Score: 804
Period size: 334 Copynumber: 1.9 Consensus size: 335
3203696 ACACATGTTT
*
3203706 TGCACTTTATTTCCTTCTCTCCATTGTCCTCAAAGAGCAGGACACACTTTATTTCCCCATTTCCT
1 TGCACTTTATTTCCTTCTCTCCATTGTCCTCAAAGAGCAGGACACACTTCATTTCCCCATTTCCT
3203771 TTGTCTTCAAAGAGTAGGACACCTTTTCCTTTTTTCCTTTATCCTTAAAAAGGAGAACACATTTC
66 TTGTCTTCAAAGAGTAGGACACCTTTTCCTTTTTTCCTTTATCCTTAAAAAGGAGAACACATTTC
* * * * *
3203836 ATTTCCTTCTTTTCCTTTTTATCCTCAAAGAGCAGGACGCACTTTATTTCCTATTTCCTTTGTCC
131 ATTTACTTATTTTCCTATTTATCCCCAAAGAGCAGAACGCACTTTATTTCCTATTTCCTTTGTCC
* * * *
3203901 TCAAAGAGTAGGACACACCTCATTTCCTTCTTTTCCCTTAGTCCTCAAAGAGCAGGATGCA-T-T
196 TCAAAAAATAAGACACACCTCATTTCCTTCTTCTCCCTTAGTCCTCAAAGAGCAGGATGCATTAT
*
3203964 TTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACATTTCATTTTCTTCTTTTTCCTTTGTCCTC
261 TTCC-TTTCTCCTTTGTCCTCAAAGAGTAGGACACATTTCATTTTCTTCTTTTTCCTTTGTCCTC
3204029 AAAGAGCAGGA
325 AAAGAGCAGGA
* ** **
3204040 TGCACTTTATTTCCTTTTCTCCATTAG-CCTCAAAGAGCAGGATGCACTTCATTTCCTTATTTTC
1 TGCACTTTATTTCCTTCTCTCCATT-GTCCTCAAAGAGCAGGACACACTTCATTTCCCCA-TTTC
* ** * * * * * * *
3204104 CTTTGTCCTT-AAAGAGTGGGATGCCTTTTCCTTTTTTTCTTTGT-CTTCAAAGAGTAGGATATA
64 CTTTGT-CTTCAAAGAGTAGGACACCTTTTCCTTTTTTCCTTTATCCTT-AAAAAGGAGAACACA
* * *
3204167 TTTCATTTACTTATTTTCC-ATTTGTCCCCAAAGAGCAGAACGCATTTTATTTCCT-TCTCTCTT
127 TTTCATTTACTTATTTTCCTATTTATCCCCAAAGAGCAGAACGCACTTTATTTCCTAT-T-TCCT
* * * * *
3204230 TTGTCCTTAAAAAATAAGACGCACTTCTTTTCCTTCTTCT-CCTTTGTCCTCAAAGAGCAGGATG
190 TTGTCCTCAAAAAATAAGACACACCTCATTTCCTTCTTCTCCCTTAGTCCTCAAAGAGCAGGATG
*
3204294 CATTTCATTTCCTTTCTCCTTTGTCCTCGAAGAGTAGGAC
255 CA-TT-ATTTCCTTTCTCCTTTGTCCTCAAAGAGTAGGAC
3204334 GCACTCTTTC
Statistics
Matches: 249, Mismatches: 35, Indels: 17
0.83 0.12 0.06
Matches are distributed among these distances:
333 1 0.00
334 111 0.45
335 102 0.41
336 4 0.02
337 26 0.10
338 5 0.02
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.41
Consensus pattern (335 bp):
TGCACTTTATTTCCTTCTCTCCATTGTCCTCAAAGAGCAGGACACACTTCATTTCCCCATTTCCT
TTGTCTTCAAAGAGTAGGACACCTTTTCCTTTTTTCCTTTATCCTTAAAAAGGAGAACACATTTC
ATTTACTTATTTTCCTATTTATCCCCAAAGAGCAGAACGCACTTTATTTCCTATTTCCTTTGTCC
TCAAAAAATAAGACACACCTCATTTCCTTCTTCTCCCTTAGTCCTCAAAGAGCAGGATGCATTAT
TTCCTTTCTCCTTTGTCCTCAAAGAGTAGGACACATTTCATTTTCTTCTTTTTCCTTTGTCCTCA
AAGAGCAGGA
Found at i:3204356 original size:35 final size:35
Alignment explanation
Indices: 3204305--3204438 Score: 119
Period size: 35 Copynumber: 3.7 Consensus size: 35
3204295 ATTTCATTTC
*
3204305 CTTTCT-CCTTTGTCCTCGAAGAGTAGGACGCACT
1 CTTTCTCCCTTTGTCCTCAAAGAGTAGGACGCACT
* *
3204339 CTTTCTCCCTTTATCCTCAAAGAGCAGGACGCATTTCATTT
1 CTTTCTCCCTTTGTCCTCAAAGAGTAGGACGCA---C---T
* ** * *
3204380 CTTTTTTTTCTTTGTCCTCGAAGAGTAGGATGCACT
1 C-TTTCTCCCTTTGTCCTCAAAGAGTAGGACGCACT
3204416 CTTT-TCCCTTTGTCCTCAAAGAG
1 CTTTCTCCCTTTGTCCTCAAAGAG
3204439 CAGTACACTT
Statistics
Matches: 79, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
34 22 0.28
35 26 0.33
36 2 0.03
38 1 0.01
39 1 0.01
41 2 0.03
42 25 0.32
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (35 bp):
CTTTCTCCCTTTGTCCTCAAAGAGTAGGACGCACT
Found at i:3204357 original size:76 final size:77
Alignment explanation
Indices: 3204266--3204441 Score: 277
Period size: 76 Copynumber: 2.3 Consensus size: 77
3204256 CTTTTCCTTC
*
3204266 TTCT-CCTTTGTCCTCAAAGAGCAGGATGCATTTCATTTC-CTTTCTCCTTTGTCCTCGAAGAGT
1 TTCTCCCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTCTCTTTCTCCTTTGTCCTCGAAGAGT
3204329 AGGACGCACTCT
66 AGGACGCACTCT
* * * *
3204341 TTCTCCCTTTATCCTCAAAGAGCAGGACGCATTTCATTTCTTTTTTTTCTTTGTCCTCGAAGAGT
1 TTCTCCCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTCTCTTTCTCCTTTGTCCTCGAAGAGT
*
3204406 AGGATGCACTCT
66 AGGACGCACTCT
3204418 TT-TCCCTTTGTCCTCAAAGAGCAG
1 TTCTCCCTTTGTCCTCAAAGAGCAG
3204442 TACACTTTCC
Statistics
Matches: 92, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
75 4 0.04
76 54 0.59
77 34 0.37
ACGTcount: A:0.19, C:0.27, G:0.16, T:0.38
Consensus pattern (77 bp):
TTCTCCCTTTGTCCTCAAAGAGCAGGACGCATTTCATTTCTCTTTCTCCTTTGTCCTCGAAGAGT
AGGACGCACTCT
Found at i:3204458 original size:77 final size:77
Alignment explanation
Indices: 3204266--3204466 Score: 257
Period size: 76 Copynumber: 2.6 Consensus size: 77
3204256 CTTTTCCTTC
* ** * * *
3204266 TTCT-CCTTTGTCCTCAAAGAGCAGGATGCATTTCATTTC-CTTTCTCCTTTGTCCTCGAAGAGT
1 TTCTCCCTTTATCCTCAAAGAGCAGGACACATTTCATTTCTTTTTTTTCTTTGTCCTCGAAGAGT
3204329 AGGACGCACTCT
66 AGGACGCACTCT
*
3204341 TTCTCCCTTTATCCTCAAAGAGCAGGACGCATTTCATTTCTTTTTTTTCTTTGTCCTCGAAGAGT
1 TTCTCCCTTTATCCTCAAAGAGCAGGACACATTTCATTTCTTTTTTTTCTTTGTCCTCGAAGAGT
*
3204406 AGGATGCACTCT
66 AGGACGCACTCT
* * *
3204418 TT-TCCCTTTGTCCTCAAAGAGCAGTACAC-TTTCCTTTTTCTTTTTTTTC
1 TTCTCCCTTTATCCTCAAAGAGCAGGACACATTT-C-ATTTCTTTTTTTTC
3204467 CTTTATCTTC
Statistics
Matches: 112, Mismatches: 10, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
75 7 0.06
76 58 0.52
77 47 0.42
ACGTcount: A:0.18, C:0.26, G:0.14, T:0.41
Consensus pattern (77 bp):
TTCTCCCTTTATCCTCAAAGAGCAGGACACATTTCATTTCTTTTTTTTCTTTGTCCTCGAAGAGT
AGGACGCACTCT
Found at i:3204550 original size:34 final size:36
Alignment explanation
Indices: 3204497--3204563 Score: 111
Period size: 34 Copynumber: 1.9 Consensus size: 36
3204487 ACCCATTTCA
*
3204497 TTCTCTTTCCGTTTTTCTTCAAAGAGCAGGATGTAC
1 TTCTCTTTCCGTTTGTCTTCAAAGAGCAGGATGTAC
3204533 TTCT-TTTCC-TTTGTCTTCAAAGAGCAGGATG
1 TTCTCTTTCCGTTTGTCTTCAAAGAGCAGGATG
3204564 CCCATTCCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 21 0.70
35 5 0.17
36 4 0.13
ACGTcount: A:0.19, C:0.21, G:0.18, T:0.42
Consensus pattern (36 bp):
TTCTCTTTCCGTTTGTCTTCAAAGAGCAGGATGTAC
Found at i:3204617 original size:11 final size:9
Alignment explanation
Indices: 3204594--3204619 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
3204584 TTCTAAAGTC
3204594 TGTGTGACA
1 TGTGTGACA
3204603 TGTGTGACA
1 TGTGTGACA
3204612 TGTGTGAC
1 TGTGTGAC
3204620 CTATATTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.12, G:0.35, T:0.35
Consensus pattern (9 bp):
TGTGTGACA
Found at i:3205196 original size:19 final size:19
Alignment explanation
Indices: 3205172--3205219 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
3205162 ACAGTAAATA
3205172 TATCGATACATAAGTGTTG
1 TATCGATACATAAGTGTTG
*
3205191 TATCGATACATAAGTTTTG
1 TATCGATACATAAGTGTTG
3205210 TATCGATACA
1 TATCGATACA
3205220 ATGTATCACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (19 bp):
TATCGATACATAAGTGTTG
Found at i:3207784 original size:51 final size:52
Alignment explanation
Indices: 3207724--3207840 Score: 150
Period size: 51 Copynumber: 2.3 Consensus size: 52
3207714 TTATTTCCGA
** * *
3207724 GGGGATACTCCAACCT-TGATTTTATTTCTAAAACACCAA-TTCTCCACAATC
1 GGGGATACTCCAACCTCCAATTTTATTTCCAAAACACCAATTTCT-CACAAAC
**
3207775 GGGGATACTCCAA-CTCCAATTTTATTTCCAAAACACTGATTTCTCACAAAC
1 GGGGATACTCCAACCTCCAATTTTATTTCCAAAACACCAATTTCTCACAAAC
3207826 GGGGATACTCCAACC
1 GGGGATACTCCAACC
3207841 CCGTTATTTC
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
50 2 0.04
51 50 0.88
52 5 0.09
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.28
Consensus pattern (52 bp):
GGGGATACTCCAACCTCCAATTTTATTTCCAAAACACCAATTTCTCACAAAC
Found at i:3207865 original size:28 final size:26
Alignment explanation
Indices: 3207825--3207899 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 26
3207815 TTCTCACAAA
3207825 CGGGGATACTCCAACCCCGTTATTTCAT
1 CGGGGATACTCCAACCCCGTTATTT--T
3207853 CGGGGATACTCCAACCCCGTTATTTT
1 CGGGGATACTCCAACCCCGTTATTTT
3207879 CGAGGGGATACTCCAACCCCG
1 C--GGGGATACTCCAACCCCG
3207900 GCTTTATTTC
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
26 2 0.04
28 43 0.96
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.24
Consensus pattern (26 bp):
CGGGGATACTCCAACCCCGTTATTTT
Found at i:3207958 original size:51 final size:51
Alignment explanation
Indices: 3207882--3208000 Score: 193
Period size: 51 Copynumber: 2.3 Consensus size: 51
3207872 TTATTTTCGA
*
3207882 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATC
1 GGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATC
* * * *
3207933 GGGGATACTTCGACCCCGGCCTTATTTCTAAAATATTGATTTCTCATAATC
1 GGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATC
3207984 GGGGATACTCCAACCCC
1 GGGGATACTCCAACCCC
3208001 ATTATTTTTA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGGCCTTATTTCCAAAATATTGATTTCTCACAATC
Found at i:3207977 original size:158 final size:158
Alignment explanation
Indices: 3207689--3208024 Score: 397
Period size: 158 Copynumber: 2.1 Consensus size: 158
3207679 AACATCAATT
* * ** * *
3207689 TTTCATCGGGGATACTCCCATCCCATTATTTCCGAGGGGATACTCCAACCTTGATTTTATTTCTA
1 TTTCATCGGGGATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCCA
* **
3207754 AAACACCAATTCTCCACAATCGGGGATACTCCAACTCCAATTTTATTTCCAAAACACTGATTTCT
66 AAACACCAATTCTCCACAATCGGGGATACTCCAACCCCAACCTTATTTCCAAAACACTGATTTCT
*
3207819 CACAAACGGGGATACTCCAACCCCGTTA
131 CACAAACGGGGATACTCCAACCCCATTA
* * *
3207847 TTTCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCCA
1 TTTCATCGGGGATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCCA
* *** * * ** * * *
3207912 AAATATTGATT-TCTCACAATCGGGGATACTTCGACCCCGGCCTTATTTCTAAAATATTGATTTC
66 AAACACCAATTCTC-CACAATCGGGGATACTCCAACCCCAACCTTATTTCCAAAACACTGATTTC
* *
3207976 TCATAATCGGGGATACTCCAACCCCATTA
130 TCACAAACGGGGATACTCCAACCCCATTA
*
3208005 TTT-TTACGGGGATACTCCAA
1 TTTCAT-CGGGGATACTCCAA
3208025 TCTCGATTTT
Statistics
Matches: 149, Mismatches: 27, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
157 3 0.02
158 146 0.98
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.31
Consensus pattern (158 bp):
TTTCATCGGGGATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCCA
AAACACCAATTCTCCACAATCGGGGATACTCCAACCCCAACCTTATTTCCAAAACACTGATTTCT
CACAAACGGGGATACTCCAACCCCATTA
Found at i:3208096 original size:130 final size:130
Alignment explanation
Indices: 3207851--3208099 Score: 288
Period size: 130 Copynumber: 1.9 Consensus size: 130
3207841 CCGTTATTTC
* * *
3207851 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCAAAAC
* * * * *
3207916 ATTGATTTCTCACAATCGGGGATACTTCGACCCCGGCCTTATTTCTAAAATATTGATTTCTCATA
66 ATCGATTTCTCACAATCGGGGATACTCCAACCCCGGCCTTATCTCCAAAATATTGATTTCTCATA
* * * * **
3207981 ATCGGGGATACTCCAACCCCATTATTTT-TACGGGGATACTCCAATCTCGATTTTATTTTTAAAA
1 ATCGGGGATACTCCAACCCCATTATTTTCGA-GGGGATACTCCAACCCCGACTTTATTTCCAAAA
* ***
3208045 CATCGATTT-TCCATAATCGAGGG-TACTCCAACCCCGTTGTTATCTCCAAAATATT
65 CATCGATTTCT-CACAATCG-GGGATACTCCAACCCCGGCCTTATCTCCAAAATATT
3208100 AAATTTAATG
Statistics
Matches: 98, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
129 2 0.02
130 93 0.95
131 3 0.03
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (130 bp):
ATCGGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCAAAAC
ATCGATTTCTCACAATCGGGGATACTCCAACCCCGGCCTTATCTCCAAAATATTGATTTCTCATA
Found at i:3216924 original size:19 final size:20
Alignment explanation
Indices: 3216880--3216931 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
3216870 TTACAAGCCA
3216880 ATGTATCGATACATTTGGTC
1 ATGTATCGATACATTTGGTC
3216900 ATGTATCGATACATCTT-GT-
1 ATGTATCGATACAT-TTGGTC
*
3216919 ATGTATCGTTACA
1 ATGTATCGATACA
3216932 AACAGTTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 12 0.40
20 16 0.53
21 2 0.07
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTGGTC
Found at i:3217030 original size:13 final size:13
Alignment explanation
Indices: 3217012--3217036 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3217002 TACAGTGGTC
3217012 ATGTATCGATACA
1 ATGTATCGATACA
3217025 ATGTATCGATAC
1 ATGTATCGATAC
3217037 TGTGCATTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3217617 original size:21 final size:22
Alignment explanation
Indices: 3217591--3217635 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
3217581 TTTCCTTTTC
3217591 TCTCCCCCTTAAT-AAAAAATT
1 TCTCCCCCTTAATGAAAAAATT
*
3217612 TCTCCCCCTTAATGAAACAATT
1 TCTCCCCCTTAATGAAAAAATT
3217634 TC
1 TC
3217636 CTTTAATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 13 0.59
22 9 0.41
ACGTcount: A:0.33, C:0.31, G:0.02, T:0.33
Consensus pattern (22 bp):
TCTCCCCCTTAATGAAAAAATT
Found at i:3225696 original size:13 final size:13
Alignment explanation
Indices: 3225678--3225703 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3225668 ACATTTGGTC
3225678 ATGTATCGATACA
1 ATGTATCGATACA
3225691 ATGTATCGATACA
1 ATGTATCGATACA
3225704 TCTTGTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3225698 original size:33 final size:32
Alignment explanation
Indices: 3225656--3225723 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
3225646 CGTTACAAGC
3225656 CAATGTATCGATACAT-TTGGTCATGTATCGATA
1 CAATGTATCGATACATCTT-GT-ATGTATCGATA
3225689 CAATGTATCGATACATCTTGTATGTATCGATA
1 CAATGTATCGATACATCTTGTATGTATCGATA
3225721 CAA
1 CAA
3225724 ACAGTTAAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
32 14 0.41
33 18 0.53
34 2 0.06
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (32 bp):
CAATGTATCGATACATCTTGTATGTATCGATA
Found at i:3225821 original size:13 final size:13
Alignment explanation
Indices: 3225803--3225827 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3225793 TACAGTGGTC
3225803 ATGTATCGATACA
1 ATGTATCGATACA
3225816 ATGTATCGATAC
1 ATGTATCGATAC
3225828 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3225845 original size:33 final size:32
Alignment explanation
Indices: 3225786--3225848 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
3225776 TTCTTTGCAA
*
3225786 GTATCGATACAGTGGTCATGTATCGATACAAT
1 GTATCGATACAGTGATCATGTATCGATACAAT
* *
3225818 GTATCGATACTGTGCATTATGTATCGATACA
1 GTATCGATACAGTG-ATCATGTATCGATACA
3225849 TCTGAAGGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (32 bp):
GTATCGATACAGTGATCATGTATCGATACAAT
Done.