Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold55
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4293517
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.26
Warning! 910309 characters in sequence are not A, C, G, or T
File 16 of 21
Found at i:3387359 original size:13 final size:13
Alignment explanation
Indices: 3387341--3387365 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3387331 TAAAAAACTA
3387341 AAAAAAATCAATT
1 AAAAAAATCAATT
3387354 AAAAAAATCAAT
1 AAAAAAATCAAT
3387366 GAATCAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (13 bp):
AAAAAAATCAATT
Found at i:3387378 original size:45 final size:43
Alignment explanation
Indices: 3387339--3387442 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 43
3387329 AATAAAAAAC
*
3387339 TAAAAAAAATCAATTAAAAAAATC-AATGAATCAAAAATAAAAAAA
1 TAAAAAAAATCAAAT-AAAAAATCTAA--AATCAAAAATAAAAAAA
*
3387384 TCAAAAAATTCATCAAATAAAAAATCTAAAATC-AAAATAAAAAAA
1 T-AAAAAA--AATCAAATAAAAAATCTAAAATCAAAAATAAAAAAA
*
3387429 TAATAAAAATCAAA
1 TAAAAAAAATCAAA
3387443 AATAAAAAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
42 6 0.12
44 5 0.10
45 14 0.27
46 10 0.20
47 8 0.16
48 8 0.16
ACGTcount: A:0.71, C:0.09, G:0.01, T:0.19
Consensus pattern (43 bp):
TAAAAAAAATCAAATAAAAAATCTAAAATCAAAAATAAAAAAA
Found at i:3387445 original size:69 final size:67
Alignment explanation
Indices: 3387287--3387450 Score: 169
Period size: 70 Copynumber: 2.4 Consensus size: 67
3387277 AAAAAGATCG
* *
3387287 AAAAATCAA-AAAAATCAAAAAT-CAAAGATAAAAAATCATAATAATAAAAAACTAAAAAAAATC
1 AAAAAT-AATAAAAATCAAAAATAAAAAAATAAAAAATCATAATAATAAAAAACTAAAAAAAATC
3387350 AATT
65 AA-T
* *
3387354 AAAAA-AATCAATGAATCAAAAATAAAAAAATCAAAAAATTCATCA-AATAAAAAATCTAAAATC
1 AAAAATAAT-AA-AAATCAAAAATAAAAAAAT-AAAAAA-TCATAATAATAAAAAA-CTAAAA--
3387417 AAAAT-AA-
59 AAAATCAAT
3387424 AAAAATAATAAAAATCAAAAATAAAAA
1 AAAAATAATAAAAATCAAAAATAAAAA
3387451 GATATGAAAA
Statistics
Matches: 82, Mismatches: 5, Indels: 18
0.78 0.05 0.17
Matches are distributed among these distances:
65 2 0.02
67 7 0.09
68 10 0.12
69 20 0.24
70 22 0.27
71 14 0.17
72 2 0.02
73 5 0.06
ACGTcount: A:0.73, C:0.09, G:0.01, T:0.18
Consensus pattern (67 bp):
AAAAATAATAAAAATCAAAAATAAAAAAATAAAAAATCATAATAATAAAAAACTAAAAAAAATCA
AT
Found at i:3387462 original size:24 final size:23
Alignment explanation
Indices: 3387329--3387450 Score: 87
Period size: 23 Copynumber: 5.3 Consensus size: 23
3387319 AAATCATAAT
* *
3387329 AATAAAAAACTAAAAAAAATC-A
1 AATAAAAAAATAATAAAAATCAA
* *
3387351 ATTAAAAAAATCAAT--GAATCAAA
1 AATAAAAAAAT-AATAAAAATC-AA
*
3387374 AATAAAAAAATCAA-AAAATTCATCA
1 AATAAAAAAAT-AATAAAAATCA--A
*
3387399 AAT-AAAAAAT-CT-AAAATCAA
1 AATAAAAAAATAATAAAAATCAA
3387419 AATAAAAAAATAATAAAAATCAAA
1 AATAAAAAAATAATAAAAATC-AA
3387443 AATAAAAA
1 AATAAAAA
3387451 GATATGAAAA
Statistics
Matches: 78, Mismatches: 10, Indels: 22
0.71 0.09 0.20
Matches are distributed among these distances:
20 4 0.05
21 11 0.14
22 16 0.21
23 23 0.29
24 20 0.26
25 4 0.05
ACGTcount: A:0.73, C:0.08, G:0.01, T:0.18
Consensus pattern (23 bp):
AATAAAAAAATAATAAAAATCAA
Found at i:3388906 original size:29 final size:29
Alignment explanation
Indices: 3388842--3388911 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
3388832 ACAAGTGAAG
* **
3388842 AAACAGTAGCTAACACAAGAAATGAGCGA
1 AAACAGTAGCTGACACAAGAAAAAAGCGA
*
3388871 AAACAGTAGCTGACACGAGAAAAAAGC-A
1 AAACAGTAGCTGACACAAGAAAAAAGCGA
*
3388899 AAAGCAGTTGCTG
1 AAA-CAGTAGCTG
3388912 TTCTTCAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
28 4 0.11
29 31 0.89
ACGTcount: A:0.49, C:0.17, G:0.23, T:0.11
Consensus pattern (29 bp):
AAACAGTAGCTGACACAAGAAAAAAGCGA
Found at i:3390604 original size:155 final size:155
Alignment explanation
Indices: 3390391--3390699 Score: 417
Period size: 155 Copynumber: 2.0 Consensus size: 155
3390381 GGTCATTCCT
* * * * * *
3390391 TAGAATCGAGTCCTAGGGTTGTCACCAGTTCTGTTTTTATGCCAAAGGTGGATATTAGGATAGGT
1 TAGAATCAACTCCTAGGGTTGTCACCAGGTCTGCTTTTATGCCAAAGATAGATATTAGGATAGGT
* * * *
3390456 TCATCCCATTTCTAATCTTTTTTAAGTCCTTTAGAGGTATCAAGTA-TTATTATGTCGAAGGTAT
66 TCATCCCATTTCTAATCCTTCTTAAGTCCTTTAGAGGTATCAAGTACTT-CTACGTCGAAGGTAT
3390520 -CTCCAAGGGGCAGTTTCGTAATTTTA
130 CCT-CAAGGGGCAGTTTCGTAATTTTA
* *
3390546 TAGAATCAACTCCTA-GGTTGTCACCGGGTCTGCTTTTATGCCGAAGATAGATATTTAGGATAGG
1 TAGAATCAACTCCTAGGGTTGTCACCAGGTCTGCTTTTATGCCAAAGATAGATA-TTAGGATAGG
* *
3390610 TTCATCCCTTTTCTAATCCTTCTTAAGTCCTTTAGAGGTATCGAGTACTTCTACGTCGAAGGTAT
65 TTCATCCCATTTCTAATCCTTCTTAAGTCCTTTAGAGGTATCAAGTACTTCTACGTCGAAGGTAT
* * *
3390675 CCTCTAGGGGTATTTTCGTAATTTT
130 CCTCAAGGGGCAGTTTCGTAATTTT
3390700 TTAAAAAACT
Statistics
Matches: 134, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
154 32 0.24
155 98 0.73
156 4 0.03
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (155 bp):
TAGAATCAACTCCTAGGGTTGTCACCAGGTCTGCTTTTATGCCAAAGATAGATATTAGGATAGGT
TCATCCCATTTCTAATCCTTCTTAAGTCCTTTAGAGGTATCAAGTACTTCTACGTCGAAGGTATC
CTCAAGGGGCAGTTTCGTAATTTTA
Found at i:3392613 original size:20 final size:21
Alignment explanation
Indices: 3392588--3392640 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
3392578 ATCTATACAT
*
3392588 TGTATCGATACATG-ACCA-AA
1 TGTATCGATACATGTA-AAGAA
*
3392608 TGTATCGATACTTGTAAAGAA
1 TGTATCGATACATGTAAAGAA
3392629 TGTATCGATACA
1 TGTATCGATACA
3392641 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACATGTAAAGAA
Found at i:3392725 original size:20 final size:20
Alignment explanation
Indices: 3392682--3392733 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
3392672 CTTAACTGTT
*
3392682 TGTATCGATACA-CACAATA
1 TGTATCGATACATCACAAAA
*
3392701 TGTATCGATACATCCCAAAA
1 TGTATCGATACATCACAAAA
3392721 TGTATCGATACAT
1 TGTATCGATACAT
3392734 TGGCTTATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (20 bp):
TGTATCGATACATCACAAAA
Found at i:3399348 original size:20 final size:21
Alignment explanation
Indices: 3399310--3399348 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
3399300 TCTAGGCAGC
*
3399310 ACCCACCAGGTCGCGACCGAT
1 ACCCACCAGGTCGCAACCGAT
*
3399331 ACCC-CCAGGTCGTAACCG
1 ACCCACCAGGTCGCAACCG
3399349 GGCAGCCCCC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.23, C:0.44, G:0.23, T:0.10
Consensus pattern (21 bp):
ACCCACCAGGTCGCAACCGAT
Found at i:3400762 original size:21 final size:22
Alignment explanation
Indices: 3400733--3400776 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
3400723 GAAATTGTTA
3400733 AATTATTTT-ATTAAGGGGGAG
1 AATTATTTTGATTAAGGGGGAG
*
3400754 AATTTTTTTGATTAAGGGGGAG
1 AATTATTTTGATTAAGGGGGAG
3400776 A
1 A
3400777 GAAAAGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.32, C:0.00, G:0.30, T:0.39
Consensus pattern (22 bp):
AATTATTTTGATTAAGGGGGAG
Found at i:3401344 original size:20 final size:21
Alignment explanation
Indices: 3401321--3401372 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
3401311 AGATTGCACA
*
3401321 GTATCGATACATG-ACCA-AAT
1 GTATCGATACATGTA-AAGAAT
*
3401341 GTATCGATACTTGTAAAGAAT
1 GTATCGATACATGTAAAGAAT
3401362 GTATCGATACA
1 GTATCGATACA
3401373 GGTCATTGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (21 bp):
GTATCGATACATGTAAAGAAT
Found at i:3401451 original size:13 final size:13
Alignment explanation
Indices: 3401433--3401458 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3401423 ACACACAATA
3401433 TGTATCGATACAT
1 TGTATCGATACAT
3401446 TGTATCGATACAT
1 TGTATCGATACAT
3401459 CCCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3401454 original size:32 final size:33
Alignment explanation
Indices: 3401413--3401480 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
3401403 CCTTAACTGT
*
3401413 TTGTATCGATACA-CACAATATGTATCGATACA
1 TTGTATCGATACATCACAAAATGTATCGATACA
* *
3401445 TTGTATCGATACATCCCAAAATGTATTGATACA
1 TTGTATCGATACATCACAAAATGTATCGATACA
3401478 TTG
1 TTG
3401481 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATCACAAAATGTATCGATACA
Found at i:3403349 original size:8 final size:8
Alignment explanation
Indices: 3403338--3403455 Score: 51
Period size: 9 Copynumber: 13.8 Consensus size: 8
3403328 ATTTTTCGTA
3403338 TTTTTTA-
1 TTTTTTAT
*
3403345 TTTTTGA-
1 TTTTTTAT
3403352 TTTTTTAT
1 TTTTTTAT
3403360 TATTTATTATT
1 T-TTT-TTA-T
*
3403371 TTGATTTTAGA
1 TT--TTTTA-T
3403382 TTTTTTAT
1 TTTTTTAT
** *
3403390 TTGATGAT
1 TTTTTTAT
*
3403398 TTTTTTGGT
1 TTTTTT-AT
3403407 TTTTTTAT
1 TTTTTTAT
3403415 TTTTTTGAT
1 TTTTTT-AT
** *
3403424 TCATTGAT
1 TTTTTTAT
3403432 TTTTTTATT
1 TTTTTTA-T
3403441 TTTTTTAT
1 TTTTTTAT
3403449 TGTTTTT
1 T-TTTTT
3403456 GATTATTATG
Statistics
Matches: 82, Mismatches: 19, Indels: 18
0.69 0.16 0.15
Matches are distributed among these distances:
7 12 0.15
8 24 0.29
9 33 0.40
10 4 0.05
11 7 0.09
12 2 0.02
ACGTcount: A:0.15, C:0.01, G:0.08, T:0.75
Consensus pattern (8 bp):
TTTTTTAT
Found at i:3403362 original size:17 final size:17
Alignment explanation
Indices: 3403338--3403532 Score: 58
Period size: 17 Copynumber: 11.4 Consensus size: 17
3403328 ATTTTTCGTA
3403338 TTTT-TTATTTTTGATT
1 TTTTATTATTTTTGATT
3403354 TTTTATTATTTATT-ATT
1 TTTTATTATTT-TTGATT
*
3403371 TTGATT-TTAGATTTTTTATT
1 TT--TTATT--ATTTTTGATT
* * *
3403391 TGATGATT-TTTTTGGTTT
1 T-TTTATTATTTTT-GATT
3403409 TTTTATT-TTTTTGATT
1 TTTTATTATTTTTGATT
* *
3403425 CATTGATT-TTTTT-ATT
1 -TTTTATTATTTTTGATT
3403441 TTTT-TTA---TTG-TT
1 TTTTATTATTTTTGATT
* *
3403453 TTTGATTA-TTATGATT
1 TTTTATTATTTTTGATT
3403469 TTTTATCTTTGATTTTTGATT
1 TTTTA---TT-ATTTTTGATT
3403490 TTTT-TTATTTTTCGAACTT
1 TTTTATTATTTTT-G-A-TT
* *
3403509 TTTGATTTTTTTTGATT
1 TTTTATTATTTTTGATT
*
3403526 TTATATT
1 TTTTATT
3403533 GAATAAACTG
Statistics
Matches: 134, Mismatches: 19, Indels: 51
0.66 0.09 0.25
Matches are distributed among these distances:
12 7 0.05
13 3 0.02
14 2 0.01
15 4 0.03
16 22 0.16
17 45 0.34
18 9 0.07
19 13 0.10
20 18 0.13
21 11 0.08
ACGTcount: A:0.16, C:0.02, G:0.09, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTTTGATT
Found at i:3403411 original size:9 final size:9
Alignment explanation
Indices: 3403394--3403527 Score: 87
Period size: 9 Copynumber: 14.8 Consensus size: 9
3403384 TTTTATTTGA
3403394 TGATTTTTT
1 TGATTTTTT
*
3403403 TGGTTTTTT
1 TGATTTTTT
3403412 T-ATTTTTT
1 TGATTTTTT
**
3403420 TGA-TTCAT
1 TGATTTTTT
3403428 TGATTTTTT
1 TGATTTTTT
3403437 T-ATTTTTT
1 TGATTTTTT
*
3403445 TTATTGTTTT
1 TGATT-TTTT
* *
3403455 TGATTATTA
1 TGATTTTTT
3403464 TGATTTTTT
1 TGATTTTTT
**
3403473 ATCTTTGATTTT
1 -TGATT--TTTT
3403485 TGATTTTTT
1 TGATTTTTT
*
3403494 TTA-TTTTT
1 TGATTTTTT
* **
3403502 CGAACTTTT
1 TGATTTTTT
3403511 TGATTTTTTT
1 TGA-TTTTTT
3403521 TGATTTT
1 TGATTTT
3403528 ATATTGAATA
Statistics
Matches: 94, Mismatches: 22, Indels: 18
0.70 0.16 0.13
Matches are distributed among these distances:
8 27 0.29
9 42 0.45
10 18 0.19
11 3 0.03
12 4 0.04
ACGTcount: A:0.14, C:0.03, G:0.10, T:0.73
Consensus pattern (9 bp):
TGATTTTTT
Found at i:3403527 original size:7 final size:7
Alignment explanation
Indices: 3403337--3403492 Score: 59
Period size: 7 Copynumber: 20.9 Consensus size: 7
3403327 CATTTTTCGT
*
3403337 ATTTTTT
1 ATTTTTG
3403344 ATTTTTG
1 ATTTTTG
*
3403351 ATTTTTT
1 ATTTTTG
3403358 ATTATTT-
1 ATT-TTTG
3403365 ATTATTTTG
1 A-T-TTTTG
*
3403374 ATTTTAG
1 ATTTTTG
*
3403381 ATTTTTT
1 ATTTTTG
*
3403388 ATTTGATG
1 ATTT-TTG
3403396 ATTTTTTTGG
1 A--TTTTT-G
* *
3403406 TTTTTTT
1 ATTTTTG
3403413 ATTTTTTTG
1 A--TTTTTG
*
3403422 ATTCATTG
1 ATT-TTTG
*
3403430 ATTTTTTT
1 A-TTTTTG
3403438 ATTTTT-
1 ATTTTTG
3403444 -TTTATTG
1 ATTT-TTG
3403451 -TTTTTG
1 ATTTTTG
3403457 ATTATTATG
1 ATT-TT-TG
*
3403466 ATTTTTT
1 ATTTTTG
*
3403473 ATCTTTG
1 ATTTTTG
3403480 ATTTTTG
1 ATTTTTG
3403487 ATTTTT
1 ATTTTT
3403493 TTTATTTTTC
Statistics
Matches: 113, Mismatches: 19, Indels: 34
0.68 0.11 0.20
Matches are distributed among these distances:
5 3 0.03
6 5 0.04
7 59 0.52
8 26 0.23
9 16 0.14
10 4 0.04
ACGTcount: A:0.17, C:0.01, G:0.09, T:0.73
Consensus pattern (7 bp):
ATTTTTG
Found at i:3404754 original size:476 final size:476
Alignment explanation
Indices: 3403801--3410078 Score: 7511
Period size: 476 Copynumber: 13.3 Consensus size: 476
3403791 TGTCTACACT
* * *
3403801 AATCTTGAAAAGAGTGGAGACTTTTACGAGAATCGATGCTTGTCTTTTTTAAGAGATGTACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
3403866 ATTTTAAGGAAAATAGGGCAAAGAAAAGAATTT-CATGCTAATGAAAATCATCAATATCATTTAT
66 ATTTTAAGGAAAATAGGGCAAAGAAAAG-ATTTCCATGCTAATGAAAATCATCAATATCATTTAT
* *
3403930 CCTAATGAGGAGATTGTGTTTCA-AGTGCGTAATCACAAAATGAATGAAGATCAATACTAGAATC
130 CCTAATGAGGAGAATGTGTTT-ATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATC
* * *
3403994 CATGTTTGTCTCATTTGAGGAACGAACTTAG-----A-AAAAATTGGTGGGAAGAAAGTCGTTCT
194 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
* * * * *
3404053 TGCAAAACCAAAGCATCAATATCGTGTATCCATATGAGAAGACTATGTTTATGGTGCCTAATCCC
259 TGCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCT
* * * * * * *
3404118 GAAAAGAATGGTG-ATTAGTTTGTCTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTGT
324 GAAAAGAA-GGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCT
* * *
3404182 ATCAAAAAAGG-GTGAAAAAAAAGCTTTTCTTGCGACACCAAAGCATCAAAGTCATGTATCCTAA
388 ATCAAAAATGGTG-GAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* *
3404246 TG-AAGGGAATTTGTTCTTGGTTCCT
452 TGAAAGGG-ATGTGTTCTTGGTTCCC
** * * ** *
3404271 AATCTTGAAAAGAATTAAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATAAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
* *
3404336 ATTTTAAGGAAAATAGGACAAAGAAAAGATTTTCATG-TAATTGAAAATCATCAATATCATTTAT
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAA-TGAAAATCATCAATATCATTTAT
* * *
3404400 CCTAATGAGGACAATGCGTTTATAGGGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
130 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
* * * * *
3404465 ATGTTTTTCCCATTTGAGGAACAAACTTAGACTTTACAAAAAATGGTGGGAAGAAAGCCTTTCTT
195 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
**
3404530 GCGAAACCAAAGTGTCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTG
260 GCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTG
* * * * * **
3404595 GAAAGGAGGGGAATTACTAT-AGCTATTAATGTTTGTCTTTTTTAAGAGACAAAGATTGATTCTA
325 AAAAGAAGGGGAATTACTATGA-CTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTA
* * * ** *
3404659 TCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCAAGACCATTGCATCAAAGTCATGTATCCTAATG
389 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
*
3404724 AAAGGGATGTGTTCTTGCTTCCC
454 AAAGGGATGTGTTCTTGGTTCCC
* * * * *
3404747 AATCTTGAAAAGAGTAGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATTTACTATG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
* * *
3404812 ATTTTTAGAAAAATAGGGCAAAGAAAAGAATTCCATGCTAATGAAAATCATCAATATCATTTATC
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAATGAAAATCATCAATATCATTTATC
* ** * *
3404877 CTAAAGAGGAGAAAATGTTTAAAGTGCCTAATCACAAAATGAATGAAGATCAATATTAGAATCCA
131 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA
* * *
3404942 TGTTTGTCTCACTTGAGGTAGGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
196 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
* *
3405007 CAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCT-A
261 CGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGA
* * *
3405071 AAATGAAAGGGAATTACTATGACTATTTATGTTTGTCTTATTTAATAGACAAACTTTGATTCTAT
326 AAA-GAAGGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTAT
* ** * * * *
3405136 TAAAAACAGTGGAAAGAAAACCTTTTCTTGCGAGACCAATGCATCAAAGTCATGTATCCTAATGA
390 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* *
3405201 AAGAGATGTGTTCTTGCTTCCC
455 AAGGGATGTGTTCTTGGTTCCC
* * *
3405223 AATCTTAAAAAGAGTGGAGATTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
* *
3405288 ATTTTAAGGAAAATAAGGCCAAA-AAATAGAATTCCATGCTAATGAAAATCATCAATATCATTTA
66 ATTTTAAGGAAAAT-AGGGCAAAGAAA-AGATTTCCATGCTAATGAAAATCATCAATATCATTTA
* * * * * *
3405352 TCCTAAAGAGCAGAATATGCTTAAAGTGCCTAATCACAAAATGAATGGAGATCAATACTAGAATC
129 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATC
* * * * * *
3405417 CATGTTTGTTTCAGTTGAGGCAGGAACTTAGACTTTACATAAATTGGTGGTAA-AAAGGCCTTTG
194 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA-GCCTTTC
* * * * * * *
3405481 TTGCAAAACCAAAGCATCAATATCATGTATCTTTATGAGAAGACTATGTGTATGGTGTCTAAT-C
258 TTGCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCC
* * * * * *
3405545 TCGAAAAGAATGGTG-ATTAGTATGTCTATTCATGTTTGTCTTATATAAGAGATAAACTTTGATT
323 T-GAAAAGAA-GGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT
* * * * * *
3405609 CTATCAAAAAATGATGGAAAAAAAAGCTTTTATTGTGACAACAAAGCATCAATGTCAAGTATCCT
386 CTATC-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * *
3405674 AATGAATGGAATGTGTTCTTGGTTCCT
450 AATGAAAGGGATGTGTTCTTGGTTCCC
* * * * *
3405701 AATCTTGAAAAGAATGGAGACAGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGGATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
*
3405766 ATTTTAAGGAAAATAGGGCAAAAAAAATGATTTCCATGC-AATTGAAAATCATCAATATCATTTA
66 ATTTTAAGGAAAATAGGGCAAAGAAAA-GATTTCCATGCTAA-TGAAAATCATCAATATCATTTA
* * * * * *
3405830 TCCTAATAAGGACAATGCG-TTACAGTGCCTAAACACAAAATGAATAAAGATCAATACTAGAATC
129 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATC
**
3405894 CATGTTTGTCTCATTTGAGGCACGAACTTAGTTTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
194 CATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
* * * *
3405959 TGTGAAAACAAAGCATCAACATCGTGTATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCCT
259 TGCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCT
* * *
3406024 GAAAAGAATGAGG-ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
324 GAAAAGAA-GGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCT
* * * * *
3406088 ATC--AAATAGTGGAAAGAAAAGCTTTTGTTACGACACGAAAGCATCAATGTCATGTATCCTAAA
388 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
*
3406151 G-AAGGGAATGTGTTCTTGGTTCCT
453 GAAAGGG-ATGTGTTCTTGGTTCCC
* * * * * * *
3406175 AATCTTGAAAAGAACGGAGACTGTTACAAGAATCGATGCTTGTCATATTTAGGGGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
* * * * *
3406240 ATTTTAAGGAAAATAGGACAAAGAAAGGATTTCCTTG-TAATTAAAAATCATCAATTTCATTTAT
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAA-TGAAAATCATCAATATCATTTAT
* * * * *
3406304 CCTAATGAGGGGAATATGTTTATAGTGCCTAACCCCAAAATGAATGAAGATCAATACTAGAATTC
130 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
* * * * * *
3406369 ATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTGCAAAATATGGGGGGGAA-AAA-ACTTAGA
195 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA-ATTGGTGGGAAGAAAGCCTT--T
* * *
3406432 CTTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATAGTTCCTAAT
257 C-TTGCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAAT
* * * * *
3406497 CCT-AGAAAGAAGGGGAATAACTATGACCATTTATGTTTGTCTTATTTAAAAGACATACCTTGAT
321 CCTGA-AAAGAAGGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGAT
*** * * * * ** * *
3406561 TCTATCAAAAACAATGGAATGAAAAGTTTTTCATCCGACACCGTAGCATTAATGTCATGTACCCT
385 TCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
* * *
3406626 AAT-TAAGGAATTGTGTTCTTGGTTCCT
450 AATGAAAGGGA-TGTGTTCTTGGTTCCC
* * * * * **
3406653 AATCTTGAAAAGAGTGGAGACTATAACGAGAATCGATGCTTGTCTTTTTTGATGGATAAACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
* * *
3406718 ATTTTAAGGAAAATAGGGCAAAGAAAAG-TTTTCACGATAA--AAATATCATCAATATCATTTAT
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAATGAAA-ATCATCAATATCATTTAT
* * * *
3406780 CCTGATGAGGAGAATGTGTTTAAAGTGCCTAAACACAAAATGAATGAAGATCATTACTAGAATCC
130 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
* * * *
3406845 ATGTTTGTCTCATTTGATGCACGAACTTAGTCTTTGCAAAAATTGGTAGGAAGAAAGCCTTTCTT
195 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* * * * * * * * * *
3406910 GTGAAGCTAAGGCATCAATATCGTGTATCCTTATGTGAAGACAATGTTTATGGTGCGTAATCCTA
260 GCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTG
* ** * * *
3406975 AAAAGAATGGGG-ATTAGTAAAACTATTCTTGTTTGTCTTATTCAAAAGACAAACTTCGATTCTA
325 AAAAGAA-GGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTA
* * * * ** *
3407039 TAAAAAATGGTGGAATGAAAAGCTTTTCTTGTGACACCAAAGAAAAAATGTCATGTATCCTAAGG
389 TCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * *
3407104 AAAAGAATTTGTTCTTGGCTCCC
454 AAAGGGATGTGTTCTTGGTTCCC
* * * * * * * * *
3407127 AATCTTGAAAGGAATGGAAACTGTTACGAGAATCGTTACCTGTCATATTTAAGGGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
* ** ** *
3407192 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACACTAAAAAAAATCTTCAATATCATTTATC
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAATGAAAATCATCAATATCATTTATC
* * * * *
3407257 CTAATGAAGAGAATGTATTTATAGTGCCTACTCACAAAATGAATAAAGATCAATGCT-GAAATCC
131 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAG-AATCC
* * *
3407321 ATGTTTGTCTCATTTGACGCATGAACTTAGACTTTACAAAAATTGGTTGGAAGAAAGCC--T-TT
195 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
*
3407383 ACGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTG
260 GCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTG
*
3407448 AAAAGAAGGGGAATTACTATGACTATTCATTTTTGTCTTATTTAAAAGACAAACTTTGATTCTAT
325 AAAAGAAGGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTAT
* * * * *
3407513 CAAAAATGTTGGAAAGAAAAGCTTTTCATGCGACACCAAAGCTTTAGTGTCATGTA-CCATAAT-
390 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCC-TAATG
* * *
3407576 TAGGGGATTGTGTTATTGGTTCCC
454 AAAGGGA-TGTGTTCTTGGTTCCC
* * * * * *
3407600 AATCATGAAAAGAGTGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
* *
3407665 ATTTTAAGGAAAATAGGGGAAA-AAAAGATTTCCATGC-AATTGAAAATCATGAATATCATTTAT
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAA-TGAAAATCATCAATATCATTTAT
* * *
3407728 CCTAGTGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATAAATGAAGATCAATACTAGAATCC
130 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
* * * *
3407793 ATGTTTGTCTCATTCGAGGCACGAACTTAAACTTTACAAAAAATGGTAGGAAGAAAGCCTTTCTT
195 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* * * * * *
3407858 GCGAACCCAAAGCGTCAACATCGTGTATCTTTTTGAGAAGACTATGTTTATAGTGCCTTATCCTA
260 GCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTG
* *
3407923 AAAAGAAGGGGAAGTACTATGACTATTCATGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTAT
325 AAAAGAAGGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTAT
* * * * * *
3407987 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGAGACCAATGCATCAATGTCAAGTTTCCTAACGA
390 CAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
*
3408052 AAGGGATGTGTTCTTGGTTCCT
455 AAGGGATGTGTTCTTGGTTCCC
* * * * * * * *
3408074 AATCATCAAAAAAAGTGGAGACTATTACAAGAATCCATGTTTGTCTTTTCTAAGGGATGTACTTT
1 AATCTTGAAAAGAA-TGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTT
* * *
3408139 GATTTTAAGGAAATTAGGGCAAAGAAAAGAATTCCATGCTAATAAAAATCATCAATATCATTTAT
65 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAATGAAAATCATCAATATCATTTAT
* * * * * *
3408204 TCTAAAGAGGAGAATGTGTTTAAAGTACCTAGT-AAAAAATGAATGAAGATCAATACTAGAATCC
130 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCC
* * *
3408268 ATGTTTGTCTCATTTAAGGCA-GAAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCTTTTCT
195 ATGTTTGTCTCATTTGAGGCACG-AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT
* ** * *
3408332 TGTGAAACCAAAGTGTCAACTTCGTGTAT-C--ATGAGAACACTATGTTTATAGTGCCTAATCCT
259 TGCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCT
* * * * *
3408394 GAAAAGAAGGGGAATTGCAATGACTATTCATATTTGTCTTATTTAAAAAATAAACTTTGATTCTA
324 GAAAAGAAGGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTA
* * * *
3408459 TGAAAAATGGTTGG-AAGAAAAGCTTTTCTTGTGATACCAATGCATCAATGTCATGTATCCTAAT
389 TCAAAAATGG-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
3408523 GAAAGGGATGTGTTCTTGGTTCCC
453 GAAAGGGATGTGTTCTTGGTTCCC
* *
3408547 AATCTTGAAAAGAGTGGAGACTGTTACGAGAATCGATGCTTGTTTTTTTTAAGGGATGTACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
* * * *
3408612 ATTTTAAGGACAATAGGGTAAAGAAAAGAATTCCATGCTAATGAAAATCGTCAATATCATTTATC
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAATGAAAATCATCAATATCATTTATC
* ** * * *
3408677 CTGATGAGGAGAATGCATTTATAGTGCCTGATCACAAAATCAATGAAGATCAATACTAGAATCTA
131 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA
* * *
3408742 TGTTTGTCACATTTGAGGCACGAACATAGACTTTACAAAAAAAATAGG-GGGAA-AAAGCCTTTC
196 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC---AAAAATTGGTGGGAAGAAAGCCTTTC
** * * *
3408805 TTGCGAAACCAAAGTGTCAACTTCGTGTATCCTTATGAGGAGACTATGTTTATAGTGCCTAATCT
258 TTGCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCC
*
3408870 TGAAAAGAAGGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAAACAAACTTTGATTCT
323 TGAAAAGAAGGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCT
* * * * * *
3408935 ATAAAAAACGGTTGGAAA-TAAAGCTTTTCTTGCGAGACCAATGCATCAATGTCATGTATCGTAA
388 ATCAAAAATGG-TGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
3408999 TGAAAGGGATGTGTTCTTGGTTCCC
452 TGAAAGGGATGTGTTCTTGGTTCCC
* *
3409024 AATC----------T------T-TTA-GAGAATCGATGCATGTTTTTTTTAAGGGATGTACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
* * *
3409071 ATTTTAAGGAAAACAGGGCAAAGAAAAGAATTCCATGCTAATGAAAATCATGAATATCATTTATC
66 ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAATGAAAATCATCAATATCATTTATC
* * * * *
3409136 CTAATGAGGAGAATGTATTTAAAGTGTCTAATCACGAAATGAATGAAGATCAATATTAGAATCCA
131 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA
** * * * * ** * *
3409201 CATTTGTTTCACTTGCGGCAGGAACCCAGACTTTACAAAAATTTGTGGGAA-AAGAGCCTCTCTT
196 TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA-AGCCTTTCTT
* * * * *
3409265 GCAAAACCAAAGCATCAATATCGTGTATCTTTATGAGAAGACTATGTTTATGGTGCCTAATCCAG
260 GCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTG
* * * * * *
3409330 AAAAGAATGGTG-ATTAGTA-CATCTATTCATGTTTATCTTATTTAAGAGATAAACTTTGATTCT
325 AAAAGAA-GGGGAATTACTATGA-CTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCT
* * * * *
3409393 ATCAAAAAATGGT-GAAAAAAAAGCTTTTATTGTGACACCAAAGCCTCAATGTTATGTATCCTAA
388 ATC-AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* *
3409457 T-AAAGGGAATGTGTTCTTGGTTGCT
452 TGAAAGGG-ATGTGTTCTTGGTTCCC
* * * * * *
3409482 AATCTTGAAATA-AATGGAGACTGTTA-GTAGAATCGATGCTTATCATATTTACGGGATGAATTT
1 AATCTTGAAA-AGAATGGAGACTGTTACG-AGAATCGATGCTTGTCTTTTTTAAGGGATGTACTT
*
3409545 TGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AATTGAAAATCATCAATATCATTT
64 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAA-TGAAAATCATCAATATCATTT
* * *
3409609 ATCCTAAT-ATGGAGACTGCGTTTATAGTGCCCAATCACAAAATGAATGAAGATCAATACTAGAA
128 ATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAA
* * * * * *
3409673 TCTATGTTTGTCTTATTTGAGGCACGAACTTATAGTTTACAAAAATTGGTGAGAACAAAGCCTTT
192 TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT
*
3409738 CTTGCGTAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATC
257 CTTGCGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATC
* * * * *
3409803 CTGAAAAGAAGTGGAATTAGTATGACTATTCATGTTTGCCTCATTTAAAAGGCAAACTTTGATTC
322 CTGAAAAGAAGGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTC
* * * * *
3409868 TATCAAAAACGGTGAAAAAAAAAG-TTTTTTATGCAACACCAAAGCATCAATGTCATGTATCCTA
387 TATCAAAAATGGTGGAAAGAAAAGCTTTTCT-TGCGACACCAAAGCATCAATGTCATGTATCCTA
* * *
3409932 ATG-ATGGGAATGTGTTCCTGCTTCCC
451 ATGAAAGGG-ATGTGTTCTTGGTTCCC
** * * * * *
3409958 AATCTTGAAAAGTGTGGAGATTGTTACAAGAAT-TATGGTTTTCTTTTTTAAGGGATGTACTTTG
1 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
* *
3410022 ATTTTAA-GAAATATAGGGCAAAGAAAAAATTTCCATGCTAA-GAAAAATCACCAATAT
66 ATTTTAAGGAAA-ATAGGGCAAAGAAAAGATTTCCATGCTAATG-AAAATCATCAATAT
3410079 TGTTAGGATC
Statistics
Matches: 5004, Mismatches: 689, Indels: 225
0.85 0.12 0.04
Matches are distributed among these distances:
456 7 0.00
457 18 0.00
458 175 0.03
459 190 0.04
460 3 0.00
461 1 0.00
467 1 0.00
468 1 0.00
469 8 0.00
470 195 0.04
471 2 0.00
472 348 0.07
473 464 0.09
474 616 0.12
475 435 0.09
476 1505 0.30
477 685 0.14
478 350 0.07
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGTACTTTG
ATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAATGAAAATCATCAATATCATTTATC
CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA
TGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
CGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGA
AAAGAAGGGGAATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATC
AAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
AGGGATGTGTTCTTGGTTCCC
Found at i:3415863 original size:475 final size:474
Alignment explanation
Indices: 3414608--3419113 Score: 4910
Period size: 475 Copynumber: 9.5 Consensus size: 474
3414598 GGAATTGACT
* * *
3414608 GTGCCTAATCACAAAATGAATGAGGAACAATACTAGAATCCATGTTTGTCTCATTTGAGGCACAA
1 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * ** *
3414673 ACTTATACTTTACAAAAATTGGTGGGAAGAAATCCTTTCTTGCAAAACCAAAATGTCAATATCGT
66 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATCGA
* * * **
3414738 GTATCCTTATGAGAAGACCAAGTTTATAGTGACTAATCCTGAAAAGAGGGGGGATTACTATGACT
131 GTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTACTATGACT
* * * *
3414803 ATTCATGTTTGTCTTATTTAAAAGAC-AACTTTTATTTTAACAAAAACAGTGGAAAGAAAAGTTT
196 ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTT
* * * * *
3414867 TTCATGCAACACTAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCTCAA
261 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAA
* * * * * * * *
3414932 TCTTGAAAAGAGTGGAGACTATTATGAGAATTGATGCTTGTCTTTTTTTGATGGATGAACTTCGA
326 TCTTGAAAAGAATGAAGACTGTTACGAGAATCGATGCTTGTC-TTTTTTAAGGGATGAACTTTGA
* *
3414997 TTATAAGGAAAGTAGGGCAAAGAAAAGATTTTCACGCTAAA--AAAATCATCAATATCATTTATC
390 TT-TAAGGAAAATAGGGCAAAGAAAAGA-TTTCATGC-AAATGAAAATCATCAATATCATTTATC
* *
3415060 CTAATGAGGAAAATGTGTTTATA
452 CTAATGAGGAGAATGCGTTTATA
* ** * *
3415083 GTGCCTAATCAGAAAATGAATGAAGATCTTTTCTAGAATACA-GTTTTGTCTCATTTGAGGCACG
1 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATG-TTTGTCTCATTTGAGGCACG
* * * * *
3415147 AATTTAGACTTTTATAAAAATTGGTGCGAAGAAAGCCTTTCTTGGGAAAA-TAAAGCGTCAATAT
65 AACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-GCAAAACCAAAGCGTCAATAT
* * * * * * * *
3415211 C-ACGTATCCTTAAGAGAAGACAATGTTTATGGTGCCAAATCTTGAAAAAAATTGGGATTAGTAT
128 CGA-GTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTACTAT
* * * * * * * *
3415275 TACTATTCAAGTTTGTCTTATTTAAGAGACAAACCTTGATTCTACCAAAACCGATGGTAAGAAAA
192 GACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* * ** * *
3415340 GCTTTCCTTGCGACACCAAAGCAAAAATTTCATGTATGCTAATGAAGGGAATGTGTTCTTGGTTC
257 GTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTC
* * * * * * *
3415405 CTAATCTTGAAAAGAATGGAGACTGTTGCAAGAATCGATGCTTGTCATATTTAAGGGATGAATTT
322 CCAATCTTGAAAAGAATGAAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTT
* *
3415470 TGATTTCAAGGAAAATAGGGCAAAGAAAAGCTTTCATGCAAATGAAAATCATCAATATCATTCAT
387 TGATTT-AAGGAAAATAGGGCAAAGAAAAGATTTCATGCAAATGAAAATCATCAATATCATTTAT
**
3415535 CCTAATGAGGAGAATGTATTTATA
451 CCTAATGAGGAGAATGCGTTTATA
* * * * * *
3415559 GTGCCTAATCACAAAGTTAATGAAGATCATTACTTGAATCCATGTTTGTCGCATTTGAGGTACGA
1 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * *
3415624 AGTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTTCAAAACCAAAAG-GTCAATATCG
66 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACC-AAAGCGTCAATATCG
* * * ** * **
3415688 AGTATCTTTGTGAGAACACTATGTTTACGGTGTCTAATCCTGAAAAGAATGGGGATTAGAATGAC
130 AGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTACTATGAC
* * * * * * * *
3415753 TATTTAAGTTTGTGTTATGTGAGAGACAAACTTTGATTCTATCAAATACGGTGGAAAGAAAAGCT
195 TATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTT
* * * *
3415818 TTTCTTGCAAGACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTTCCA
260 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCA
* * * * *
3415883 ATCTTGAAAAGAGTGAAGACTGTTACGGGAATTGATGCTTGTTTTTTTTAAGGGATGTACTTTGA
325 ATCTTGAAAAGAATGAAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGA
* * * ** *
3415948 CTTTAAGAAAAATGGGGCGAAGAAAAGATTTCCATGCAGTTGAAAATCATCAATATCAGTTATCC
390 -TTTAAGGAAAATAGGGCAAAGAAAAGATTT-CATGCAAATGAAAATCATCAATATCATTTATCC
*
3416013 TAATGAGGAGAATGCGTTTAGA
453 TAATGAGGAGAATGCGTTTATA
* * *
3416035 GTGCCTAATAACAAAATGAATGAGGATCAATACTAGAATCCATGTTTGTCTTATTTGAGGCACGA
1 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * *
3416100 ACTTAGACTTTACAAAAATTTGTGGGAAGAAATCCTTTCCTGCAAAACCAAAGCGTTACTATCGT
66 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATCGA
* * * * *
3416165 GTATCCTTATGAGAAGACCAAGTTTATAGTGACTAATCCTGAAAATAAGGGGGATTACTATGACT
131 GTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTACTATGACT
* * *
3416230 ATTCATGTTTGTCTTATTTAAAAGTCAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGTTT
196 ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTT
* * * *
3416295 TTCATT-CAACCCCAAAGCATCAATTTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCCA
261 TTC-TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCA
* * * * *
3416359 ACCTTGAAAAGAGA-AAAGACTGTTACGAGAATCGATGCTTGTCTTTTTTGATGGATGAGCTTTG
325 ATCTTGAAAAGA-ATGAAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTG
* * *
3416423 ATTTTAGGAAAAATAGGGCAAAGAAAAGATTTTCACGCAAA--AAAATTATCAATATCATTTATC
389 ATTTAAGG-AAAATAGGGCAAAGAAAAGA-TTTCATGCAAATGAAAATCATCAATATCATTTATC
* *
3416486 CTAAAGAGGAGAATGTGTTTATA
452 CTAATGAGGAGAATGCGTTTATA
* ** * * ** *
3416509 GTGCCTAATCAAAAAATGAATGAAGATCTTTTCTAGGATCCACATTTGTCTCATTTGTGGCACGA
1 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * ** * *
3416574 ACATAGACTTTTATAAAAATTGGTGTGAAAAAAGCTTTTCTTGGGGAAA-CAACGTGTCAATATC
66 ACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-GCAAAACCAAAGCGTCAATATC
* *
3416638 -ATGTATCCTTATGAGAAGACTATGTTCT-TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
129 GA-GTATCCTTATGAGAAGACTATGTT-TATAGTGCCTAATCCTGAAAAGAATGGGGATTACTAT
* ** * * *
3416701 GACTATTAATGTTTGTCTTATTTAAGGGAGAAACATTGATTCTATCAAAAATGGT-GAAAGGAAA
192 GACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-GAAA
* * ** *
3416765 AGCTTTTCTTGTGACACCAAAGCAAAAATGTCATGTATCCTAATGAATGGAATGTGTTCTTGGTT
256 AGTTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTT
* * * * * * *
3416830 CCCAATCTTGAAAGGAATGGAA-ACTATTACGAGAATCGTTACTTGTCATGTTTAAGGGATGAAT
321 CCCAATCTTGAAAAGAAT-GAAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAAC
* *** * * *
3416894 TTTGATGTTATGGAAAATAGCATAAAGAAAAGATTTCCATTCAATTGAAAATCATCAATATCTTT
385 TTTGAT-TTAAGGAAAATAGGGCAAAGAAAAGATTT-CATGCAAATGAAAATCATCAATATCATT
* *
3416959 TATACTAAGGAGGAGAATGCGTTTATA
448 TATCCTAATGAGGAGAATGCGTTTATA
* * * *
3416986 GTGCCTAATCATAAAATGAATGAAGATCAGTACTAGAAACCATGCTTGTCTCATTTGAGGCACGA
1 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * *
3417051 TCATAGACTTTACAAAAA-TAGTGGGAAAAAAAGCCTTTCTTACAAAACCAATGCGTCAATATCG
66 ACTTAGACTTTACAAAAATTGGTGGG-AAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATCG
* * * * * * * * *
3417115 TGTATCCTTATAAGAACACTATGCTTATAATGCCTTATCCTAAAAAGAAGGGGGATTACTGTGAC
130 AGTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTACTATGAC
* * * * *
3417180 TATTCATTTTTGTCTTATTGAAAAGACAAACCTTGATTCTATCAAAAAACAGTGGAAATAAAAGT
195 TATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGT
* * * *
3417245 TTTTCATGC-AGCACCAAAGCATTATTGTCGTGTATCCTAATGAAGGGAATGTGTTCTTGGTTCC
259 TTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCC
* * * * * * *
3417309 CAATCTTGAAAAGATTAAAGACTGTTACAAAAATTGATGCTTG-CTTTTTTTAAAGGATGAATTT
323 CAATCTTGAAAAGAATGAAGACTGTTACGAGAATCGATGCTTGTC-TTTTTTAAGGGATGAACTT
* * * * *
3417373 TGATTTTAAGGAAAATAGGGCAATGAAAAAATTTCCATGCAATTGGAAATCGTCAATATCATTTA
387 TGA-TTTAAGGAAAATAGGGCAAAGAAAAGATTT-CATGCAAATGAAAATCATCAATATCATTTA
* * * *
3417438 TCCTACTAATGAGAATGCGTTTATG
450 TCCTAATGAGGAGAATGCGTTTATA
*
3417463 GTGCCTAATCACAAAATGAATGAAGATCAATAC-----T--A-G-TTGTCTCATTTGAGGCATGA
1 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* *
3417519 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAGAACCAAA--G----TATCGT
66 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATCGA
** * * * *
3417578 GTGCCCTTATTAGAAGACCATGTTTATAGTGCCTAATCCTAAAAAGAAGGGGGATTACTATGACT
131 GTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTACTATGACT
* * *
3417643 ATTCATTTTTGTCTTATTTAAAAGACAAACATTGATTCTGTCAAAAACGGTGGAAAGAAAAGTTT
196 ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTT
** * * * * * * *
3417708 TTCAAGCGGCACCAAAGCATCATTATCGTGTATCCTAACGAAGGGAATCTATTCTTGGTTCCCAA
261 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAA
* * * * * * * * *
3417773 TTTTGAAAAGAGTAAAGATTGTTACGAGAATCAATACTTGTTTTTTTTAAAGGATGAATTTTGAT
326 TCTTGAAAAGAATGAAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGAT
* * *
3417838 TATAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAATTGAAAATCATCGATATCATTTATCCT
391 T-TAAGGAAAATAGGGCAAAGAAAAGATTT-CATGCAAATGAAAATCATCAATATCATTTATCCT
** *
3417903 AATTTGGAGAATGCGCTTATA
454 AATGAGGAGAATGCGTTTATA
* *
3417924 GTGCCTAATCACAAAATGAATG-AGATCAATACTAGAATCCATATTTGTCTCATTTGAGGCACAA
1 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* ** * * * * * *
3417988 ACTTAGACTGTACAAAAATTGGTGGGTTGAAAGGCTTACTTGCAAAATCAAAGCATCAATAACGT
66 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATCGA
* *
3418053 GTATCCTTATGAGAAGACCT-TGTTTATAGAGCTTAATCCTGAAAAGAA-GGTGGATTACTATGA
131 GTATCCTTATGAGAAGA-CTATGTTTATAGTGCCTAATCCTGAAAAGAATGG-GGATTACTATGA
* * *
3418116 CTATTCATGTTTGTCCTATTTAAAAGGCAAACTTTGATTCTATTAAAAACGGTGGAAAGAAAAGT
194 CTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGT
* * * * * *
3418181 TTTTCATGGGACACCAAAGCCTCAATGTCATGTATCCTAATAAAGGGAATGTGTTCTTGTTTCTC
259 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCC
* * * * * * * * *
3418246 AATCTTGAAAAGAATGGAGACTATAACAAAAATCGATGCTTATCCCTTTTTT-ATGGAAGAGCTT
324 AATCTTGAAAAGAATGAAGACTGTTACGAGAATCGATGCTTGT--CTTTTTTAAGGGATGAACTT
* * ** *
3418310 TGATTTTTTAAGGAAAAGAGGGCAAAGAAAAGATTTTCACGCTAAAAAAAAATCATGAATATCAT
387 TGA---TTTAAGGAAAATAGGGCAAAGAAAAGA-TTTCATGC-AAATGAAAATCATCAATATCAT
**
3418375 TTATCCTAATGAGGAGAATGTATTTATA
447 TTATCCTAATGAGGAGAATGCGTTTATA
** ** * * * *
3418403 GTAGCCTAATCACAAAATGAATGAAGATCTTTTTTAGAATCCACGTTTGTCCCATTTAAGGCATG
1 GT-GCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * *
3418468 AACTTAGACTTTTA-AAAAACTAGTGTGAAGAAAGCCTTTCTTGGAAAA-CAAAGTGTCAATATC
65 AACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATC
* * * * * * *
3418531 -ATGTATCCTTATGCGAAGACTGTGTTCATGGTGCCTAATCTTGAAAAGAATAGGGATTA-GATG
129 GA-GTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTACTATG
* * * * * * *
3418594 ACTATTCAAGTTTGTGTTATATAAGAGACAAACATTGATTCGATAAAAAACGGTGGAAAGAAAAG
193 ACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * * * *
3418659 CTTTTCTTGCGAGACTAATGCATCAATGTCATGTATCCTAATGAAGGGGATGTGTTCTTGGTTTC
258 TTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCC
* *
3418724 CAATCTTGAAAAGAGTGAAGACTGTTAC-AGGAATCGATGCTTGTCTTTTTTAAGGGATGTACTT
323 CAATCTTGAAAAGAATGAAGACTGTTACGA-GAATCGATGCTTGTCTTTTTTAAGGGATGAACTT
** * *
3418788 TGATTTTAAAAAAAATAGGGCAAAGAAAAGAATTCCATGCTAATGAAAATCATCAATATCATTTA
387 TGA-TTTAAGGAAAATAGGGCAAAGAAAAG-ATTTCATGCAAATGAAAATCATCAATATCATTTA
**
3418853 TCCTAATGAGTTGAATGCGTTTATA
450 TCCTAATGAGGAGAATGCGTTTATA
* * *
3418878 GTGCCTAATTACAAAATGAATGAAGATCAATAGTAGAATCCATGTTTGTCTCGTTTGAGGCACGA
1 GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * *
3418943 ACTTAGTA-TTTATAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAGAGTGTCAATATC-
66 ACTTAG-ACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATCG
* * * *
3419006 ATGTATCCCTATGAGAAGACTATGTTTA-AGGTGCTTAATCCTGAAAAGAATGGGGATTAGTTTG
130 A-GTATCCTTATGAGAAGACTATGTTTATA-GTGCCTAATCCTGAAAAGAATGGGGATTACTATG
** * *
3419070 ACTATTTGTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
193 ACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTAT
3419114 TTCAAATGAA
Statistics
Matches: 3360, Mismatches: 588, Indels: 165
0.82 0.14 0.04
Matches are distributed among these distances:
460 12 0.00
461 227 0.07
462 101 0.03
465 1 0.00
466 1 0.00
467 1 0.00
468 57 0.02
469 70 0.02
470 1 0.00
473 4 0.00
474 210 0.06
475 941 0.28
476 883 0.26
477 463 0.14
478 44 0.01
479 197 0.06
480 77 0.02
481 67 0.02
482 3 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (474 bp):
GTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATCGA
GTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATGGGGATTACTATGACT
ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGTTT
TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAA
TCTTGAAAAGAATGAAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGAT
TTAAGGAAAATAGGGCAAAGAAAAGATTTCATGCAAATGAAAATCATCAATATCATTTATCCTAA
TGAGGAGAATGCGTTTATA
Found at i:3416447 original size:951 final size:948
Alignment explanation
Indices: 3414608--3419113 Score: 5079
Period size: 951 Copynumber: 4.7 Consensus size: 948
3414598 GGAATTGACT
* * * * * *
3414608 GTGCCTAATCACAAAATGAATGAGGAACAATACTAGAATCCATGTTTGTCTCATTTGAGGCACAA
1 GTGCCTAATCACAAAATGAATGAAGATCATTACTTGAATCCACGTTTGTCTCATTTGAGGCACGA
* * * *
3414673 ACTTATACTTTACAAAAATTGGTGGGAAGAAATCCTTTCTTGCAAAACCAAAATGTCAATATCGT
66 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACC-AAAGGTCAATATCGA
* * * * ** *
3414738 GTATCCTTATGAGAAGACCAAGTTTATAGTGACTAATCCTGAAAAGAGGGGGGATTACTATGACT
130 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * * * * * *
3414803 ATTCATGTTTGTCTTATTTAAAAGAC-AACTTTTATTTTAACAAAAACAGTGGAAAGAAAAGTTT
195 ATTCAAGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * *
3414867 TTCATGCAACACTAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGG-TTCTCA
260 TTCTTGCAAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTTC-CA
* * * * * * *
3414931 ATCTTGAAAAGAGTGGAGACTATTATGAGAATTGATGCTTGTCTTTTTTTGATGGATGAACTTCG
324 ATCTTGAAAAGAGTGAAGACTGTTACGAGAATCGATGCTTGT-TTTTTTTAAGGGATGAACTTTG
* * * **
3414996 ATTATAAGGAAAGTAGGGCAAAGAAAAGATTTTCACGC-TAAAAAAATCATCAATATCATTTATC
388 ATT-TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAT-TGAAAATCATCAATATCATTTATC
* * * ** * *
3415060 CTAATGAGGAAAATGTGTTTATAGTGCCTAATCAGAAAATGAATGAAGATCTTTTCTAGAATACA
451 CTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCA
* * * *
3415125 -GTTTTGTCTCATTTGAGGCACGAATTTAGACTTTTATAAAAATTGGTGCGAAGAAAGCCTTTCT
516 TG-TTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACAAAAATTAGTGGGAAGAAAGCCTTTCT
* * ** * * * * *
3415189 TGGGAAAA-TAAAGCGTCAATATCACGTATCCTTAAGAGAAGACAATGTTTATGGTGCCAAATCT
579 T-GCAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACCATGTTTATAGTG-CTAATCC
* ** * * * * *
3415253 TGAAAAAAATTGGGATTAGTATTACTATTCAAGTTTGTCTTATTTAAGAGACAAACCTTGATTCT
642 TGAAAAGAAGGGGGATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCT
* * * * * * * * ** *
3415318 ACCAAAACCGATGGTAAGAAAAGCTTTCCTTGCGACACCAAAGCAAAAATTTCATGTATGCTAAT
707 ATCAAAAACGGTGGAAAGAAAAGTTTTTCATGCAACACCAAAGCATCAATTTCATGTATCCTAAT
* * ** * *
3415383 GAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTGCAAGAATCGATGCTT
772 GAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAAAGACTGTTACAAAAATCGATGCTT
* * * * * * *
3415448 GTCATATTTAAGGGATGAATTTTGATTTCAAGGAAAATAGGGCAAAGAAAAG-CTTTCATGCAAA
837 GTCTTTTTTAATGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAA
*
3415512 TGAAAATCATCAATATCATTCATCCTAATGAGGAGAATGTATTTATA
902 TGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATA
* * * * *
3415559 GTGCCTAATCACAAAGTTAATGAAGATCATTACTTGAATCCATGTTTGTCGCATTTGAGGTACGA
1 GTGCCTAATCACAAAATGAATGAAGATCATTACTTGAATCCACGTTTGTCTCATTTGAGGCACGA
* * *
3415624 AGTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTTCAAAACCAAAAGGTCAATATCGA
66 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACC-AAAGGTCAATATCGA
* * * * * *
3415689 GTATCTTTGTGAGAACACTATGTTTACGGTGTCTAATCCTGAAAAGAATGGGGATTAGAATGACT
130 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * * * *
3415754 ATTTAAGTTTGTGTTATGTGAGAGACAAACTTTGATTCTATCAAATACGGTGGAAAGAAAAGCTT
195 ATTCAAGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
*
3415819 TTCTTGCAAGACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTTCCAA
260 TTCTTGCAAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTTCCAA
* * *
3415884 TCTTGAAAAGAGTGAAGACTGTTACGGGAATTGATGCTTGTTTTTTTTAAGGGATGTACTTTGAC
325 TCTTGAAAAGAGTGAAGACTGTTACGAGAATCGATGCTTGTTTTTTTTAAGGGATGAACTTTGA-
* * * *
3415949 TTTAAGAAAAATGGGGCGAAGAAAAGATTTCCATGCAGTTGAAAATCATCAATATCAGTTATCCT
389 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA-TTGAAAATCATCAATATCATTTATCCT
* * *
3416014 AATGAGGAGAATGCGTTTAGAGTGCCTAATAACAAAATGAATGAGGATCAATACTAGAATCCATG
453 AATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATG
* * * *
3416079 TTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTTGTGGGAAGAAATCCTTTCCTGCA
518 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCA
* * *
3416144 AAACCAAAGCGTTACTATCGTGTATCCTTATGAGAAGACCAAGTTTATAGTGACTAATCCTGAAA
583 AAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACCATGTTTATAGTG-CTAATCCTGAAA
* * *
3416209 ATAAGGGGGATTACTATGACTATTCATGTTTGTCTTATTTAAAAGTCAAACTTTGATTTTATCAA
647 AGAAGGGGGATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAA
* * *
3416274 AAATGGTGGAAAGAAAAGTTTTTCATTCAACCCCAAAGCATCAATTTCATGTATCCTAATGAAAG
712 AAACGGTGGAAAGAAAAGTTTTTCATGCAACACCAAAGCATCAATTTCATGTATCCTAATGAAAG
* * *
3416339 GAATGTGTTCTTGGTTCCCAACCTTGAAAAGAGA-AAAGACTGTTACGAGAATCGATGCTTGTCT
777 GAATGTGTTCTTGGTTCCCAATCTTGAAAAGA-ATAAAGACTGTTACAAAAATCGATGCTTGTCT
* *
3416403 TTTTTGATGGATGAGCTTTGATTTT-AGGAAAAATAGGGCAAAGAAAAGATTTTCACGCAAA--A
841 TTTTTAATGGATGAACTTTGATTTTAAGG-AAAATAGGGCAAAGAAAAGATTTTCACGCAAATGA
* * *
3416465 AAATTATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATA
905 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATA
* * * * * * *
3416509 GTGCCTAATCAAAAAATGAATGAAGATCTTTTCTAGGATCCACATTTGTCTCATTTGTGGCACGA
1 GTGCCTAATCACAAAATGAATGAAGATCATTACTTGAATCCACGTTTGTCTCATTTGAGGCACGA
* * * * * ** *
3416574 ACATAGACTTTTATAAAAATTGGTGTGAAAAAAGCTTTTCTTGGGGAAA-CAACGTGTCAATATC
66 ACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-GCAAAACCAAAG-GTCAATATC
3416638 -ATGTATCCTTATGAGAAGACTATGTTCT-TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
128 GA-GTATCCTTATGAGAAGACTATGTT-TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* * *
3416701 GACTATT-AATGTTTGTCTTATTTAAGGGAGAAACATTGATTCTATCAAAAATGGT-GAAAGGAA
191 GACTATTCAA-GTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAA-GAA
** * ** *
3416764 AAGCTTTTCTTGTGACACCAAAGCAAAAATGTCATGTATCCTAATGAATGGAATGTGTTCTTGGT
254 AAGCTTTTCTTGCAAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGT
* * * * * * ** *
3416829 TCCCAATCTTGAAAGGAATGGAA-ACTATTACGAGAATCGTTACTTGTCATGTTTAAGGGATGAA
319 TTCCAATCTTGAAAAGAGT-GAAGACTGTTACGAGAATCGATGCTTGTTTTTTTTAAGGGATGAA
* * *** * *
3416893 TTTTGATGTTATGGAAAATAGCATAAAGAAAAGATTTCCATTCAATTGAAAATCATCAATATCTT
383 CTTTGAT-TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-ATTGAAAATCATCAATATCAT
* * * *
3416958 TTATACTAAGGAGGAGAATGCGTTTATAGTGCCTAATCATAAAATGAATGAAGATCAGTACTAGA
446 TTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGA
* * * * *
3417023 AACCATGCTTGTCTCATTTGAGGCACGATCATAGACTTTACAAAAA-TAGTGGGAAAAAAAGCCT
511 ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGG-AAGAAAGCCT
* * * * * * * *
3417087 TTCTTACAAAACCAATGCGTCAATATCGTGTATCCTTATAAGAACACTATGCTTATAATGCCTTA
575 TTCTTGCAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACCATGTTTATAGTG-CTAA
* * * * *
3417152 TCCTAAAAAGAAGGGGGATTACTGTGACTATTCATTTTTGTCTTATTGAAAAGACAAACCTTGAT
639 TCCTGAAAAGAAGGGGGATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGAT
* * * * *
3417217 TCTATCAAAAAACAGTGGAAATAAAAGTTTTTCATGCAGCACCAAAGCAT-TATTGTCGTGTATC
704 TCTATC-AAAAACGGTGGAAAGAAAAGTTTTTCATGCAACACCAAAGCATCAATT-TCATGTATC
* * *
3417281 CTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGATTAAAGACTGTTACAAAAATTGA
767 CTAATGAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAAAGACTGTTACAAAAATCGA
* * * * *
3417346 TGCTTG-CTTTTTTTAAAGGATGAATTTTGATTTTAAGGAAAATAGGGCAATGAAAAAATTTCCA
832 TGCTTGTC-TTTTTTAATGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCA
* * * * * * * ** *
3417410 TGCAATTGGAAATCGTCAATATCATTTATCCTACTAATGAGAATGCGTTTATG
896 CGCAAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATA
* *
3417463 GTGCCTAATCACAAAATGAATGAAGATCA--A--T--A-CTA-G-TTGTCTCATTTGAGGCATGA
1 GTGCCTAATCACAAAATGAATGAAGATCATTACTTGAATCCACGTTTGTCTCATTTGAGGCACGA
* *
3417519 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAGAACCAAA-G----TATCGTG
66 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGGTCAATATCGAG
** * * * * * *
3417579 TGCCCTTATTAGAAGACCATGTTTATAGTGCCTAATCCTAAAAAGAAGGGGGATTACTATGACTA
131 TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA
** * * *
3417644 TTCATTTTTGTCTTATTTAAAAGACAAACATTGATTCTGTCAAAAACGGTGGAAAGAAAAGTTTT
196 TTCAAGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTT
** * * * * * * * *
3417709 TCAAGC-GGCACCAAAGCATCATTATCGTGTATCCTAACGAAGGGAATCTATTCTTGGTTCCCAA
261 TCTTGCAAG-ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTTCCAA
* * * * * * *
3417773 TTTTGAAAAGAGTAAAGATTGTTACGAGAATCAATACTTGTTTTTTTTAAAGGATGAATTTTGAT
325 TCTTGAAAAGAGTGAAGACTGTTACGAGAATCGATGCTTGTTTTTTTTAAGGGATGAACTTTGAT
* *
3417838 TATAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAATTGAAAATCATCGATATCATTTATCCT
390 T-TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-ATTGAAAATCATCAATATCATTTATCCT
** * *
3417903 AATTTGGAGAATGCGCTTATAGTGCCTAATCACAAAATGAATG-AGATCAATACTAGAATCCATA
453 AATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATG
* * * ** * *
3417967 TTTGTCTCATTTGAGGCACAAACTTAGACTGTACAAAAATTGGTGGGTTGAAAGGCTTACTTGCA
518 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCA
* * * * *
3418032 AAATCAAAGCATCAATAACGTGTATCCTTATGAGAAGACCTTGTTTATAGAGCTTAATCCTGAAA
583 AAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACCATGTTTATAGTGC-TAATCCTGAAA
* * * *
3418097 AGAAGGTGGATTACTATGACTATTCATGTTTGTCCTATTTAAAAGGCAAACTTTGATTCTATTAA
647 AGAAGGGGGATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAA
** * *
3418162 AAACGGTGGAAAGAAAAGTTTTTCATGGGACACCAAAGCCTCAATGTCATGTATCCTAAT-AAAG
712 AAACGGTGGAAAGAAAAGTTTTTCATGCAACACCAAAGCATCAATTTCATGTATCCTAATGAAA-
* * ** * * *
3418226 GGAATGTGTTCTTGTTTCTCAATCTTGAAAAGAATGGAGACTATAACAAAAATCGATGCTTATCC
776 GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATAAAGACTGTTACAAAAATCGATGCTTGT--
* * *
3418291 CTTTTTT-ATGGAAGAGCTTTGATTTTTTAAGGAAAAGAGGGCAAAGAAAAGATTTTCACGCTAA
839 CTTTTTTAATGGATGAACTTTGA--TTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGC-AA
** *
3418355 AAAAAAATCATGAATATCATTTATCCTAATGAGGAGAATGTATTTATA
901 ATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATA
** * * *
3418403 GTAGCCTAATCACAAAATGAATGAAGATC-TTTTTTAGAATCCACGTTTGTCCCATTTAAGGCAT
1 GT-GCCTAATCACAAAATGAATGAAGATCATTACTT-GAATCCACGTTTGTCTCATTTGAGGCAC
* * * *
3418467 GAACTTAGACTTTTA-AAAAACTAGTGTGAAGAAAGCCTTTCTTGGAAAA-CAAAGTGTCAATAT
64 GAACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAG-GTCAATAT
* * * * *
3418530 C-ATGTATCCTTATGCGAAGACTGTGTTCATGGTGCCTAATCTTGAAAAGAATAGGGATTAG-AT
127 CGA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* * * *
3418593 GACTATTCAAGTTTGTGTTATATAAGAGACAAACATTGATTCGATAAAAAACGGTGGAAAGAAAA
191 GACTATTCAAGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAAGAAAA
* * * *
3418658 GCTTTTCTTGCGAGACTAATGCATCAATGTCATGTATCCTAATGAAGGGGATGTGTTCTTGGTTT
256 GCTTTTCTTGCAAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTT
* *
3418723 CCAATCTTGAAAAGAGTGAAGACTGTTAC-AGGAATCGATGCTTGTCTTTTTTAAGGGATGTACT
321 CCAATCTTGAAAAGAGTGAAGACTGTTACGA-GAATCGATGCTTGTTTTTTTTAAGGGATGAACT
** * *
3418787 TTGATTTTAAAAAAAATAGGGCAAAGAAAAGAATTCCATGCTAATGAAAATCATCAATATCATTT
385 TTGA-TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-ATTGAAAATCATCAATATCATTT
** * *
3418852 ATCCTAATGAGTTGAATGCGTTTATAGTGCCTAATTACAAAATGAATGAAGATCAATAGTAGAAT
448 ATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAAT
* *
3418917 CCATGTTTGTCTCGTTTGAGGCACGAACTTAGTA-TTTATAAAAATTAGTGGGAAGAAAGCCTTT
513 CCATGTTTGTCTCATTTGAGGCACGAACTTAG-ACTTTACAAAAATTAGTGGGAAGAAAGCCTTT
* * * * * *
3418981 CTTGCGAAACCAGAGTGTCAATATCATGTATCCCTATGAGAAGACTATGTTTA-AGGTGCTTAAT
577 CTTGCAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACCATGTTTATA-GTGC-TAAT
* * * ** * *
3419045 CCTGAAAAGAATGGGGATTAGTTTGACTATTTGTGTTTGTCTTATTTTAGAGACAAACTTTGATT
640 CCTGAAAAGAAGGGGGATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATT
3419110 CTAT
705 CTAT
3419114 TTCAAATGAA
Statistics
Matches: 2964, Mismatches: 520, Indels: 138
0.82 0.14 0.04
Matches are distributed among these distances:
935 2 0.00
936 104 0.04
937 186 0.06
938 313 0.11
939 38 0.01
940 40 0.01
941 26 0.01
942 1 0.00
943 3 0.00
944 33 0.01
945 25 0.01
947 3 0.00
948 3 0.00
949 5 0.00
950 180 0.06
951 1034 0.35
952 407 0.14
953 9 0.00
954 322 0.11
955 229 0.08
956 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (948 bp):
GTGCCTAATCACAAAATGAATGAAGATCATTACTTGAATCCACGTTTGTCTCATTTGAGGCACGA
ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGGTCAATATCGAG
TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA
TTCAAGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTT
TCTTGCAAGACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTTCCAAT
CTTGAAAAGAGTGAAGACTGTTACGAGAATCGATGCTTGTTTTTTTTAAGGGATGAACTTTGATT
TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCATTGAAAATCATCAATATCATTTATCCTAAT
GAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTT
GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCAAAA
CCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACCATGTTTATAGTGCTAATCCTGAAAAGAA
GGGGGATTACTATGACTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAAC
GGTGGAAAGAAAAGTTTTTCATGCAACACCAAAGCATCAATTTCATGTATCCTAATGAAAGGAAT
GTGTTCTTGGTTCCCAATCTTGAAAAGAATAAAGACTGTTACAAAAATCGATGCTTGTCTTTTTT
AATGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAATGAAAATCA
TCAATATCATTTATCCTAATGAGGAGAATGTATTTATA
Found at i:3419672 original size:20 final size:20
Alignment explanation
Indices: 3419647--3419696 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
3419637 TGCTTATCGT
*
3419647 TTTTAAGGGATGAATTTTGA
1 TTTTAAGGAATGAATTTTGA
3419667 TTTTAAGGAATGAATTTTGA
1 TTTTAAGGAATGAATTTTGA
3419687 TTTTAAGGAA
1 TTTTAAGGAA
3419697 AATAGGGCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (20 bp):
TTTTAAGGAATGAATTTTGA
Found at i:3420780 original size:478 final size:475
Alignment explanation
Indices: 3419667--3422752 Score: 3157
Period size: 478 Copynumber: 6.5 Consensus size: 475
3419657 TGAATTTTGA
* * **
3419667 TTTTAAGGAATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AATTGAA
1 TTTTATGG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAA-AAAA
* * * * *
3419731 AATCATCAATATCATTTATACTAATGAGGAGAATGCGTTTAGAGTGCCTAACCACAAAATGATTG
64 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * ** * *
3419796 AAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGATATGAACTTAAACTTTACAAAAATTGA
129 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGCGAACTTAGACTTTACAAAAATTGG
* ** * * * *
3419861 TGGGAAGAAAGCCTTTCTTACGAAACCAAAGCATTAAT-TCGTGTATTCTTATGAGAAGACCATG
194 TGGGAAGAAAGCCTTTCCTGTGAAAACAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATG
* * * **
3419925 TTTATAGTGACTAAGCC-TAAAAAG-AGAGGGGATTACTATGACTATTTTTGTTTGTCTTATTTA
259 TTTATAGTGCCTAATCCGAAAAAAGAAG-GGGGATTACTATGACTATTCATGTTTGTCTTATTTA
* * * * * **
3419988 AAAGGCAAACTTTCATTCTATCAAAAATGGTGGAACGTAAAGTTTTTCGTGCGACAAGAAAGCAT
323 AAAGACAAACTTTGATTCTATCAAAAATGGTGGAA--AAAAGCTTTTCATGCGACACCAAAGCAT
*
3420053 CAATGTCATGTATCCTAATGAAGGAAATGTGTTATTGGTTCCCAATCTTGGAATAAG--TGGAGA
386 CAATGTCATGTATCCTAATGAAGGAAATGTGTTCTTGGTTCCCAATCTT-GAA-AAGAATGGAGA
*
3420116 CTGTTACGAGAATCGATGCTTGTCTTT
449 CTGTTACGAGAATCGATGCTTGTCATT
* * * * * * *
3420143 TTTTATAGATGAACTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGATTTTCACGTTAAAATAAA
1 TTTTATGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAAAAAAAA
* *
3420208 TCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGGCTAATCACAAAATGAATGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * * *
3420273 GATCTTTTCTAGAATCCACGTTTGTCTCATTTAAGGTGCGAACTTAGACTTTACAAAAATTGGTA
131 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGCGAACTTAGACTTTACAAAAATTGGTG
* *
3420338 GGAAGAAAGCCTTTCCTGGGAAAACAAAGCATCAATATCGTGTATCCTTATGAGAAGACCATGTT
196 GGAAGAAAGCCTTTCCTGTGAAAACAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTT
** * *
3420403 TATAGTGCCTAATCCGAAAAAAAAGAAGGGGGAACACTATAACTGTTCATGTTTGT-TCTATTTA
261 TATAGTGCCTAATCCG--AAAAAAGAAGGGGGATTACTATGACTATTCATGTTTGTCT-TATTTA
* * ** *
3420467 AAAGGCAAACTTTGATTCTATCAAAAATGGTGGGAAAAAAGGTTTTTCATATGACACCAAAGTAT
323 AAAGACAAACTTTGATTCTATCAAAAATGGT-GGAAAAAA-GCTTTTCATGCGACACCAAAGCAT
* * * * *
3420532 TAATGTCTTGTATCCTAATGAAGGAAATGTGTTATTGGTTCCCAATCTTAAAAAGAGTGGAGACT
386 CAATGTCATGTATCCTAATGAAGGAAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT
* *
3420597 GTTACAAGAATCGATGCTTGT-TTT
451 GTTACGAGAATCGATGCTTGTCATT
* * *
3420621 TTTTATGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAATATTTTCACGCTAAAAAAAA
1 TTTTATGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAAAAAAAA
* * * *
3420686 TCCTTAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCGC-AATCACAAAATGAATAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC-CTAATCACAAAATGAATGA
* * * * * *** *
3420750 AGATCCTTTCTAGAATTCACGTTTGTCTCATTTAAGGCATGAATTTAGACTTTACAAAAATTGGT
130 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGCGAACTTAGACTTTACAAAAATTGGT
* ** * * * * *
3420815 GCGAAGAAAGCCTTTGTTGGGAAAACAAAGCGTTAATATCGTGTAACCTTATGAAAAGACTAT-T
195 GGGAAGAAAGCCTTTCCTGTGAAAACAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGT
* * ** * * * *
3420879 TTCATGGTACCTAATGTTGAAAAAAAAAGTGGGGATTAGTATTACTATTCATGTTTGCCTTATTT
260 TT-ATAGTGCCTAAT-CCGAAAAAAGAAG-GGGGATTACTATGACTATTCATGTTTGTCTTATTT
** * * * * *
3420944 AGGAGACATACTTTGATTCTATCAAAAATAGTGAAAAGAAAAACTTTTCTTGCGACACCAAAGCA
322 AAAAGACAAACTTTGATTCTATCAAAAATGGTG-GAA-AAAAGCTTTTCATGCGACACCAAAGCA
** * * * * *
3421009 AAAATATCTTGTATCCTAATGAATGG-AATGTGTTGTTGGTTCCTAATCTGGAAAAGAATGGAGA
385 TCAATGTCATGTATCCTAATGAA-GGAAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * *
3421073 CTATTACGAGAATCAATGCTTGTCATA
449 CTGTTACGAGAATCGATGCTTGTCATT
* * * * * * *
3421100 TTTAAGGGATGAATTTTGATTTCAAGGAAAATAGGGCAAAGAAAAGGTTTCTATGCAAAAAAAAA
1 TTTTATGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAAAAAAAA
* * * *
3421165 TCATCAATATCATTTATCCTAACGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAGTAAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
** * * * * *
3421230 GATCATTTTTTGAATCCATGTTTGT-TGCATTTGAGGCAG-GAAGTTAAACTTTACAAAAATTAG
131 GATCATTACTAGAATCCATGTTTGTCT-CATTTGAGG-TGCGAACTTAGACTTTACAAAAATTGG
* * * ** * * * *
3421293 TGAGAAGAAAGCCTTT-CTTTCAAAACCAAAGGGTCAATATCGAGTATCCTTGTGAGAACACTGT
194 TGGGAAGAAAGCCTTTCCTGTGAAAA-CAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAT
** * * * * * * *
3421357 GTTTACGGTGCCTAATCCTG--AAAACAATGGTGATTAGTATGACTAGTCATGTTTGTGTTATGT
258 GTTTATAGTGCCTAATCC-GAAAAAAGAAGGGGGATTACTATGACTATTCATGTTTGTCTTATTT
* * * ** *
3421420 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGGGACCAATGCA
322 AAAAGACAAACTTTGATTCTATCAAAAATGGTGG-AA-AAAAGCTTTTCATGCGACACCAAAGCA
* * * * * *
3421485 TCAATTTCATGTATCCAAAT-AAAGAGAATGTGTTCTTGGTTTCCAATCTTGAAAAGAGTGAAGA
385 TCAATGTCATGTATCCTAATGAAGGA-AATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
* *
3421549 TTGTTACGAGAATCGATGTTTGTC-TT
449 CTGTTACGAGAATCGATGCTTGTCATT
* * **
3421575 TTTTA---A-G------GATTTTAAGAAAAATAGGGCAAAGAAAAGAATTCCATGCTAATGAAAA
1 TTTTATGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAAAAAAAA
* * * *
3421630 TGATCAATATCATTTATCTTAATGAGGAGAATGTGTTTAAAGTGTCTAATCACAAAATGAATGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * *
3421695 GATCAATACTAGAATCCATGTTTGTCTCATTTGA--TGCAGGAACTTAAACTTTACAAAAATTTG
131 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGC--GAACTTAGACTTTACAAAAATTGG
* * * *
3421758 TGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATG
194 TGGGAAGAAAGCCTTTCCTGTGAAAACAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATG
* * * * *
3421823 TTTAT-GTTGCTTAATCC-TAAAAAGAATGGGGATTAGTATGTCTATTCATGTTTGTCTTATTTA
259 TTTATAG-TGCCTAATCCGAAAAAAGAAGGGGGATTACTATGACTATTCATGTTTGTCTTATTTA
* * * * *
3421886 AGAGACAAACTTTGATTCTATAAAAAAACGATGGATAAAAAGCTTTT-ATTGTGACACCAAAGCA
323 AAAGACAAACTTTGATTCTAT-CAAAAATGGTGGA-AAAAAGCTTTTCA-TGCGACACCAAAGCA
* * * *
3421950 TCAATCTCATGTATCTTAATGAAAGG-AATGTGTTCTTGGTTCCTAATCCTGAAAAGAATGGAGA
385 TCAATGTCATGTATCCTAATG-AAGGAAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * * *
3422014 CTATTATGAAAATCGATGCTTCTCATA
449 CTGTTACGAGAATCGATGCTTGTCATT
** * * ** * * **
3422041 TTCAAGGGATGTACTTCAATTTTAAGGAAAATAGGGCAAAGAAATGAATTCCATGCTAATGAAAA
1 TTTTATGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAAAAAAAA
* * *
3422106 TGATCGATATCATTTATCCTAATGAGGAGAATGTGTTTAAAGTGCCTAATCACAAAATGAATGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * *
3422171 GATCAATACTAGAATCCATGTTTATCTCATTTGAGGCAG-GAA---AGACTTTACAAAAATTGGT
131 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGG-TGCGAACTTAGACTTTACAAAAATTGGT
* * *** *
3422232 GGGAAGAAAGCCTTTTCTGTGAAACCAAAATGTCAATATCGTGTATCCTTATGAGAAGACAATGT
195 GGGAAGAAAGCCTTTCCTGTGAAAACAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGT
* * *
3422297 TTATAGTGCCTAATCTTG--AAAAGAAGGGGGATTACAATGACTATTCTTGTTTGTCTTATTTAA
260 TTATAGTGCCTAATC-CGAAAAAAGAAGGGGGATTACTATGACTATTCATGTTTGTCTTATTTAA
* * * * ** **
3422360 AAGAGAAACTTTGATTCTATTAAAAATGGTGGAAGGAAAAGTTTTTCGTGCGACACCAAATAAAA
324 AAGACAAACTTTGATTCTATCAAAAATGGTGGAA--AAAAGCTTTTCATGCGACACCAAAGCATC
* * * *
3422425 AATGTCATGTCTCCTAATTAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTG
387 AATGTCATGTATCCTAATGAAGGAAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTG
* *
3422490 TTAGGAGAGTCGATGCTTGTCA-T
452 TTACGAGAATCGATGCTTGTCATT
* * *
3422513 ATTTATGAGATGAATTTTGATTTTAAGGAAAATAAGGG-AAAGAAAAGGTTTCCATGC-AAAAGA
1 TTTTATG-GATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCTAAAA-A
* * * * * *
3422576 AAATCATTAATATCATTTATCCTAGTTAAGAGAATATGTTTATGGTGCCTAATCACAAAATGAAT
63 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * ** * *
3422641 AAAGATCATTACTAGAATCCATTTTTGTCTCATTTGAGGCACG-ACTTAGATTTTACAAAAATTT
128 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGCGAACTTAGACTTTACAAAAATTG
* * **
3422705 GTGGGAAGAAAGCCTTT-CTTTCAAAACCAAAGGGTCAATATCGTGTAT
193 GTGGGAAGAAAGCCTTTCCTGTGAAAA-CAAAGCATCAATATCGTGTAT
3422753 TGATAAAAAC
Statistics
Matches: 2190, Mismatches: 349, Indels: 143
0.82 0.13 0.05
Matches are distributed among these distances:
462 1 0.00
464 1 0.00
465 356 0.16
466 21 0.01
467 3 0.00
469 1 0.00
470 1 0.00
471 2 0.00
472 21 0.01
473 367 0.17
474 12 0.01
475 246 0.11
476 342 0.16
477 22 0.01
478 400 0.18
479 385 0.18
480 9 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (475 bp):
TTTTATGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCTAAAAAAAA
TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTGCGAACTTAGACTTTACAAAAATTGGTG
GGAAGAAAGCCTTTCCTGTGAAAACAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTT
TATAGTGCCTAATCCGAAAAAAGAAGGGGGATTACTATGACTATTCATGTTTGTCTTATTTAAAA
GACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAGCTTTTCATGCGACACCAAAGCATCAATG
TCATGTATCCTAATGAAGGAAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
GAGAATCGATGCTTGTCATT
Found at i:3425590 original size:51 final size:50
Alignment explanation
Indices: 3425512--3425641 Score: 179
Period size: 51 Copynumber: 2.6 Consensus size: 50
3425502 AATTTTAACA
* * **
3425512 AAAATGTATCAATACATCTAGATAAAAAGATAGAATGTATTGATACACTG
1 AAAATGTATCGATACATCTAGATAAAAAGACAGAATGTATCAATACACTG
*
3425562 AAGAATGTATCGATACATCTAGATAAAAAGACAGAATGTATCAATACATTG
1 AA-AATGTATCGATACATCTAGATAAAAAGACAGAATGTATCAATACACTG
* *
3425613 AAAACTGTATCGATACATCTTGGTAAAAA
1 AAAA-TGTATCGATACATCTAGATAAAAA
3425642 TGTGACTTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
50 4 0.06
51 67 0.94
ACGTcount: A:0.47, C:0.12, G:0.15, T:0.27
Consensus pattern (50 bp):
AAAATGTATCGATACATCTAGATAAAAAGACAGAATGTATCAATACACTG
Found at i:3426640 original size:31 final size:32
Alignment explanation
Indices: 3426564--3426651 Score: 90
Period size: 33 Copynumber: 2.8 Consensus size: 32
3426554 TGGTGTTTTG
* * *
3426564 AAAAGGGTTGCCACTAACTTGTGTGGGCTTTTA
1 AAAAAGGTTGCCACCAACTTGTGTAGGC-TTTA
*
3426597 AAAATAAG-TGCCACCAACTTGTGTAGGC-TTA
1 AAAA-AGGTTGCCACCAACTTGTGTAGGCTTTA
* *
3426628 AAAAAGGTTGCCATCGACTTGTGT
1 AAAAAGGTTGCCACCAACTTGTGT
3426652 GGATTTTGAA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
30 2 0.04
31 21 0.46
33 22 0.48
34 1 0.02
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.30
Consensus pattern (32 bp):
AAAAAGGTTGCCACCAACTTGTGTAGGCTTTA
Found at i:3426697 original size:28 final size:28
Alignment explanation
Indices: 3426668--3427137 Score: 455
Period size: 28 Copynumber: 16.7 Consensus size: 28
3426658 TGAAAAGGGG
* * *
3426668 TGCCACTGACCTGTGGGCTTTGGAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
* * ** *
3426696 TGCCACCGACTTATGGGCTTAAAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
* * *
3426724 TGCCACTTACTTGTGGCCTTT-AGAAGGG
1 TGCCACTGACTTGTGGGCTTTGA-AAGGA
** * ** *
3426752 TGCCACCAACTTGTGGACTTAAAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
** * *
3426780 TGCCACTTG-CTTGTATGCTTTGGAAGGG
1 TGCCAC-TGACTTGTGGGCTTTGAAAGGA
* * ** *
3426808 TGCCACCGATTTGTGGGCTTAAAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
* *
3426836 TGCCACTTG-CTTGTGGGCTTTAAAAAAGA
1 TGCCAC-TGACTTGTGGGCTTT-GAAAGGA
3426865 TGCCACTGACTTGTGGGCTTTGAAA-GA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
* *
3426892 TGCCACTAACTTGTGGGCTTTGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTG-AAAGGA
*
3426921 TGCCACTTGA-TTGTGGGCTTTGAAAAAGA
1 TGCCAC-TGACTTGTGGGCTTTG-AAAGGA
*
3426950 TGCCACTGACTTGTGGGCTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
* *
3426978 TGCCACTAACTTGTGGGCTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
* **
3427006 TGCCACTGACTTGTGGGCTTTAAAAAAA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
*
3427034 TGCCATTGACTTGTGGGCTTTGAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
* * *
3427062 TGCCATTGACTTGTGGGCTTTAAAAAGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
*
3427090 TGCCATTGACTTGTGGGCTTTGAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGA
*
3427118 TGCCATTGACTTGTGGGCTT
1 TGCCACTGACTTGTGGGCTT
3427138 CAACTGACCT
Statistics
Matches: 378, Mismatches: 53, Indels: 22
0.83 0.12 0.05
Matches are distributed among these distances:
27 25 0.07
28 284 0.75
29 67 0.18
30 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (28 bp):
TGCCACTGACTTGTGGGCTTTGAAAGGA
Found at i:3426739 original size:56 final size:56
Alignment explanation
Indices: 3426668--3427267 Score: 435
Period size: 56 Copynumber: 10.9 Consensus size: 56
3426658 TGAAAAGGGG
* * ** * * * * *
3426668 TGCCACTGACCTGTGGGCTTTGGAAGGGTGCCACCGACTTATGGGCTTAAAAAGGG
1 TGCCACTTACTTGTGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTTAAAAAGGA
* * * * ** * *
3426724 TGCCACTTACTTGTGGCCTTTAGAAGGGTGCCACCAACTTGTGGACTTAAAAAGGG
1 TGCCACTTACTTGTGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTTAAAAAGGA
* ** ** * * * * *
3426780 TGCCACTTGCTTGTATGCTTTGGAAGGGTGCCACCGATTTGTGGGCTTAAAAAGGG
1 TGCCACTTACTTGTGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTTAAAAAGGA
* **
3426836 TGCCACTTGCTTGTGGGCTTTAAAAAAGATGCCACTGACTTGTGGGCTTTGAAA-GA
1 TGCCACTTACTTGTGGGCTTT-AAAAAGATGCCACTGACTTGTGGGCTTAAAAAGGA
* * *
3426892 TGCCACTAACTTGTGGGCTTTGAAAAGGGTGCCACTTGA-TTGTGGGCTTTGAAAAA-GA
1 TGCCACTTACTTGTGGGCTTT-AAAAAGATGCCAC-TGACTTGTGGGC-TT-AAAAAGGA
* * * *
3426950 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAA-GA
1 TGCCACTTACTTGTGGGCTTTAAAAAGATGCCACTGACTTGTGGGC-TTAAAAAGGA
* * * **
3427006 TGCCACTGACTTGTGGGCTTTAAAAAAATGCCATTGACTTGTGGGCTTTGAAAGGA
1 TGCCACTTACTTGTGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTTAAAAAGGA
* **
3427062 TGCCA-TTGACTTGTGGGCTTTAAAAAGATGCCATTGACTTGTGGGCTTTGAAAGGA
1 TGCCACTT-ACTTGTGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTTAAAAAGGA
* * * **
3427118 TGCCA-TTGACTTGTGGGC--T-------T-CAACTGACCTGTGAGCTT-TGAAGAGA
1 TGCCACTT-ACTTGTGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTTAAAAAG-GA
* * * * **
3427164 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTGTGGGCTT-TGAAGAGA
1 TGCCACTTACTTGTGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTTAAAAAG-GA
* * * * *
3427220 TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTATGGGCTT
1 TGCCACTTACTTGTGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTT
3427268 TGAAGAGATG
Statistics
Matches: 468, Mismatches: 57, Indels: 38
0.83 0.10 0.07
Matches are distributed among these distances:
45 3 0.01
46 31 0.07
47 2 0.00
48 1 0.00
54 1 0.00
55 7 0.01
56 348 0.74
57 50 0.11
58 25 0.05
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.29
Consensus pattern (56 bp):
TGCCACTTACTTGTGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTTAAAAAGGA
Found at i:3427183 original size:28 final size:28
Alignment explanation
Indices: 3427140--3427277 Score: 208
Period size: 28 Copynumber: 4.9 Consensus size: 28
3427130 GTGGGCTTCA
*
3427140 ACTGACCTGTGAGCTTTGAAGAGATGCC
1 ACTGACCTGTGGGCTTTGAAGAGATGCC
*
3427168 ACTGACTTGTGGGCTTTGAA-AGGATGCC
1 ACTGACCTGTGGGCTTTGAAGA-GATGCC
3427196 ACTGACCTGTGGGCTTTGAAGAGATGCC
1 ACTGACCTGTGGGCTTTGAAGAGATGCC
*
3427224 ACTGACTTGTGGGCTTTGAA-AGGATGCC
1 ACTGACCTGTGGGCTTTGAAGA-GATGCC
*
3427252 ACTGACCTATGGGCTTTGAAGAGATG
1 ACTGACCTGTGGGCTTTGAAGAGATG
3427278 AATGTTCTAG
Statistics
Matches: 100, Mismatches: 6, Indels: 8
0.88 0.05 0.07
Matches are distributed among these distances:
27 2 0.02
28 96 0.96
29 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (28 bp):
ACTGACCTGTGGGCTTTGAAGAGATGCC
Found at i:3427207 original size:74 final size:74
Alignment explanation
Indices: 3427068--3427211 Score: 225
Period size: 74 Copynumber: 1.9 Consensus size: 74
3427058 AGGATGCCAT
* * * * *
3427068 TGACTTGTGGGCTTTAAAAAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCATTGACTTGTG
1 TGACCTGTGAGCTTTAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTGTG
3427133 GGCTTCAAC
66 GGCTTCAAC
* *
3427142 TGACCTGTGAGCTTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTGTG
1 TGACCTGTGAGCTTTAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTGTG
3427207 GGCTT
66 GGCTT
3427212 TGAAGAGATG
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 63 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (74 bp):
TGACCTGTGAGCTTTAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTGTG
GGCTTCAAC
Found at i:3427230 original size:102 final size:102
Alignment explanation
Indices: 3427040--3427239 Score: 296
Period size: 102 Copynumber: 2.0 Consensus size: 102
3427030 AAAATGCCAT
* * * * *
3427040 TGACTTGTGGGCTTTGAAAGGATGCCATTGACTTGTGGGCTTTAAAAAGATGCCATTGACTTGTG
1 TGACCTGTGAGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAAGATGCCACTGACCTGTG
*
3427105 GGCTTTGAAAGGATGCCATTGACTTGTGGGCTTCAAC
66 GGCTTTGAAAGGATGCCACTGACTTGTGGGCTTCAAC
* *
3427142 TGACCTGTGAGCTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTGT
1 TGACCTGTGAGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTAAAAAGATGCCACTGACCTGT
3427206 GGGCTTTG-AAGAGATGCCACTGACTTGTGGGCTT
65 GGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTT
3427240 TGAAAGGATG
Statistics
Matches: 88, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
101 6 0.07
102 82 0.93
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.30
Consensus pattern (102 bp):
TGACCTGTGAGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTAAAAAGATGCCACTGACCTGTG
GGCTTTGAAAGGATGCCACTGACTTGTGGGCTTCAAC
Found at i:3427243 original size:130 final size:130
Alignment explanation
Indices: 3427010--3427267 Score: 390
Period size: 130 Copynumber: 2.0 Consensus size: 130
3427000 AAAAGATGCC
* * * * *
3427010 ACTGACTTGTGGGCTTTAAAAAAATGCCATTGACTTGTGGGCTTTGAAAGGATGCCATTGACTTG
1 ACTGACCTGTGAGCTTTAAAAAAATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTG
* * * *
3427075 TGGGCTTTAAAAAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCATTGACTTGTGGGCTTCA
66 TGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTATGGGCTTCA
* * *
3427140 ACTGACCTGTGAGCTTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTG
1 ACTGACCTGTGAGCTTTAAAAAAATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTG
* *
3427205 TGGGCTTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTATGGGCTT
66 TGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTATGGGCTT
3427268 TGAAGAGATG
Statistics
Matches: 114, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
130 114 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (130 bp):
ACTGACCTGTGAGCTTTAAAAAAATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTG
TGGGCTTTAAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACCTATGGGCTTCA
Found at i:3429277 original size:506 final size:505
Alignment explanation
Indices: 3428569--3429579 Score: 1916
Period size: 506 Copynumber: 2.0 Consensus size: 505
3428559 AGGTTGGGTA
3428569 AGACATTGCCATCCATTTCTGTCAAGATTAGAGCCCGTCCGGAGAAAGCTTGCTTTACGACATAC
1 AGACATTGCCATCCATTTCTGTCAAGATTAGAGCCCGTCCGGAGAAAGCTTGCTTTACGACATAC
3428634 AGTCCCTCCCAATTAGGGGTCCACTTGCCTCGTGCATCTTTGTGAATTGGGAGGATTTTTTTCAA
66 AGTCCCTCCCAATTAGGGGTCCACTTGCCTCGTGCATCTTTGTGAATTGGGAGGATTTTTTTCAA
3428699 CACTAGTTCACCTGGGTGGAATTGTCGTGGTCGCATTTTCTTGTGGTGAGCCCGAATCATGCGTC
131 CACTAGTTCACCTGGGTGGAATTGTCGTGGTCGCATTTTCTTGTGGTGAGCCCGAATCATGCGTC
*
3428764 TCTGATACATTTGACCATGACAGATGGCTTTCAAGCG-TTCTCTTCGATGAGGTTGAGTTGGTTG
196 TCTGATACATTTGACCATGACAAATGGCTTTCAAGCGTTTCTCTTCGATGAGGTTGAGTTGGTTG
* *
3428828 TATTTGTTCTTGGTCTATTCAGCCTCTTTGAGTTTGGCTTCCATTAAGACTCTGCAAGAAAGGAT
261 TATCTATTCTTGGTCTATTCAGCCTCTTTGAGTTTGGCTTCCATTAAGACTCTGC--GAAAGGAT
*
3428893 TTTCGAACTTCAACTGGCAATACAGCTTCCATCCCATAGACAAGAGAGTATGGGGTTGCACCCAT
324 TTTCGAACTTCAACTGGCAATACAACTTCCATCCCATAGACAAGAGAGTATGGGGTTGCACCCAT
3428958 GGATTTTCGAACTAAGGTTTGATATACATGAAATGCAAAGGGTAACTTCTCATGCCAATCTTAAT
389 GGATTTTCGAACTAAGGTTTGATATACATGAAATGCAAAGGGTAACTTCTCATGCCAATCTTAAT
3429023 AAGTCTTAGTCATTTTCTTGACTATTCTTTTAAAGTTTTTGTTGGGTGCCTC
454 AAGTCTTAGTCATTTTCTTGACTATTCTTTTAAAGTTTTTGTTGGGTGCCTC
3429075 AGACATTGCCATCCATTTCTGTCAAGATTAGAGCCCGTCCGGAGAAAGCTTGCTTTACGACATAC
1 AGACATTGCCATCCATTTCTGTCAAGATTAGAGCCCGTCCGGAGAAAGCTTGCTTTACGACATAC
3429140 AGTCCCTCCCAATTAGGGGTCCACTTGCCTCGTGCATCTTTGTGAATTGGGAGGATTTTTTTCAA
66 AGTCCCTCCCAATTAGGGGTCCACTTGCCTCGTGCATCTTTGTGAATTGGGAGGATTTTTTTCAA
3429205 CACTAGTTCACCTGGGTGGAATTGTCGTGGTCGCATTTTCTTGTGGTGAGCCCGAATCATGCGTC
131 CACTAGTTCACCTGGGTGGAATTGTCGTGGTCGCATTTTCTTGTGGTGAGCCCGAATCATGCGTC
3429270 TCTGATACATTTGACCATGACAAATGGCTTTCAAGCGTTTCTCTTCGATGAGGTTGAGTTGGTTG
196 TCTGATACATTTGACCATGACAAATGGCTTTCAAGCGTTTCTCTTCGATGAGGTTGAGTTGGTTG
3429335 TATCTATTCTTGGTCTATTCAGCCTCTTTGAGTTTGGCTTCCATTAAGACTCTGCGAAAGGATTT
261 TATCTATTCTTGGTCTATTCAGCCTCTTTGAGTTTGGCTTCCATTAAGACTCTGCGAAAGGATTT
*
3429400 TTGAACTTCAACTGGCAATACAACTTCCATCCCATAGACAAGAGAGTATGGGGTTGCACCCATGG
326 TCGAACTTCAACTGGCAATACAACTTCCATCCCATAGACAAGAGAGTATGGGGTTGCACCCATGG
* * *
3429465 ATTTTCGAACTAAGGTTTGATATGCATGGAATGCAAAGGGTAACTTCTCATGCCAATCTTTATAA
391 ATTTTCGAACTAAGGTTTGATATACATGAAATGCAAAGGGTAACTTCTCATGCCAATCTTAATAA
*
3429530 GTCTTAGTCATTTTCTTGACTATTCTTTTAATGTTTTTGTTGGGTGCCTC
456 GTCTTAGTCATTTTCTTGACTATTCTTTTAAAGTTTTTGTTGGGTGCCTC
3429580 GACTGCCCCA
Statistics
Matches: 495, Mismatches: 9, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
505 184 0.37
506 231 0.47
507 80 0.16
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.35
Consensus pattern (505 bp):
AGACATTGCCATCCATTTCTGTCAAGATTAGAGCCCGTCCGGAGAAAGCTTGCTTTACGACATAC
AGTCCCTCCCAATTAGGGGTCCACTTGCCTCGTGCATCTTTGTGAATTGGGAGGATTTTTTTCAA
CACTAGTTCACCTGGGTGGAATTGTCGTGGTCGCATTTTCTTGTGGTGAGCCCGAATCATGCGTC
TCTGATACATTTGACCATGACAAATGGCTTTCAAGCGTTTCTCTTCGATGAGGTTGAGTTGGTTG
TATCTATTCTTGGTCTATTCAGCCTCTTTGAGTTTGGCTTCCATTAAGACTCTGCGAAAGGATTT
TCGAACTTCAACTGGCAATACAACTTCCATCCCATAGACAAGAGAGTATGGGGTTGCACCCATGG
ATTTTCGAACTAAGGTTTGATATACATGAAATGCAAAGGGTAACTTCTCATGCCAATCTTAATAA
GTCTTAGTCATTTTCTTGACTATTCTTTTAAAGTTTTTGTTGGGTGCCTC
Found at i:3432709 original size:20 final size:20
Alignment explanation
Indices: 3432684--3432756 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
3432674 TTTACCCAGA
*
3432684 TGTATCGATACATTGTTCAT
1 TGTATCGATACATTATTCAT
* *
3432704 TGTATCAATATATTATTCAT
1 TGTATCGATACATTATTCAT
* * * *
3432724 TATATCGATACATTTTTTAA
1 TGTATCGATACATTATTCAT
3432744 TGTATCGATACAT
1 TGTATCGATACAT
3432757 CCAGGCATTT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.47
Consensus pattern (20 bp):
TGTATCGATACATTATTCAT
Found at i:3438381 original size:28 final size:28
Alignment explanation
Indices: 3438315--3438905 Score: 770
Period size: 28 Copynumber: 20.9 Consensus size: 28
3438305 TGAAAAAAGT
* *
3438315 TGCCACTAACTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTG-AAAGGG
*
3438344 TGCCATTGACTTGTGGGCTTTGAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
3438372 TGCCACTGACTTGTGGGCTTTGAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
* *
3438400 TACCACTGACTTGTGGGCTTTGAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
* **
3438428 TGCCACTAACTTGTGGGCTTTGAAAAGAA
1 TGCCACTGACTTGTGGGCTTTG-AAAGGG
* *
3438457 TGCCACTGACTTTTGGGGTTTGAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
*
3438485 TGCCACTGACTTGTGGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTG-AAAGGG
* *
3438514 TGCCACTGACTTATGGGCTTTGAAAGAG
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
*
3438542 TGCCACTGACTTGCGTGGGCTTTGAAAAGG
1 TGCCACTGACTT--GTGGGCTTTGAAAGGG
* *
3438572 TGCCACTAACTTGTGGGCTTTGAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
* * *
3438600 TGCCACTAACTTGTTGGCTTTGAAAAGAG
1 TGCCACTGACTTGTGGGCTTTG-AAAGGG
* *
3438629 TGCCACTGACTTGTGGGCTTTTAAAAGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
* * *
3438657 TG-CACTGACTTATTGGCTTCGAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
* *
3438684 TGCCACTGACTTGTAGGCTTTGAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
*
3438712 TGCCACTGACTTGTGGGCTTTGAAAAGAGT
1 TGCCACTGACTTGTGGGCTTTG-AAAG-GG
* * *
3438742 TGCCACTGACTCGTGGGCTTTTAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
* *
3438770 TGCCATTGACTTGTGGGCTTTGAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
3438798 TGCCACTGACTTGTGGGCTTTGAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
* *
3438826 TGCCACTGCCTTGTGGGCTTTGAAAGGA
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
* * *
3438854 TGTCATTGACTTGTGGGCTTTAAAAGGG
1 TGCCACTGACTTGTGGGCTTTGAAAGGG
3438882 TGCCACTGACTTGTGGGCTTTGAA
1 TGCCACTGACTTGTGGGCTTTGAA
3438906 GAGATGAACG
Statistics
Matches: 493, Mismatches: 61, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
27 22 0.04
28 325 0.66
29 101 0.20
30 45 0.09
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
TGCCACTGACTTGTGGGCTTTGAAAGGG
Found at i:3438705 original size:170 final size:168
Alignment explanation
Indices: 3438246--3438905 Score: 849
Period size: 170 Copynumber: 3.8 Consensus size: 168
3438236 TTTTTTAAAA
* * * *
3438246 AAAGG-TGCCACTAACTTGTGTGGGCTTTGGAAAAAGTTACCACCGACTCATGTAGGCTTTGAAA
1 AAAGGATGCCACTAAC-T-TGTGGGCTTT-G-AAAAGATGCCACTGACT--TGTGGGCTTTG--A
* * * *
3438310 AAAGTTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCATTGACTTGTGGGCTTTGAAAGGGTGC
58 AAGGGTGCCACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGC
* *
3438375 CACTGACTTGTGGGCTTTGAAAGGGTACCACTGACTTGTGGGCTTTG
122 CACTGACTTGTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG
* *
3438422 AAAGGATGCCACTAACTTGTGGGCTTTGAAAAGAATGCCACTGACTTTTGGGGTTTGAAAGGGTG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAAG-ATGCCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3438487 CCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTATGGGCTTTGAAAGAGTGCCACTGAC
65 CCACTGACTTGTGGGCTTTG-AAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGAC
*
3438552 TTGCGTGGGCTTTGAAAAGGTGCCACTAACTTGTGGGCTTTG
129 TT--GTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG
* * *
3438594 AAAGGATGCCACTAACTTGTTGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTTAAAAGGTG
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAAGA-TGCCACTGACTTGTGGGCTTTGAAAGGGTG
* * * * * *
3438659 -CACTGACTTATTGGCTTCGAAAGGGTGCCACTGACTTGTAGGCTTTGAAAGGATGCCACTGACT
65 CCACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
* *
3438723 TGTGGGCTTTGAAAAGAGTTGCCACTGACTCGTGGGCTTTT
130 TGTGGGCTTTGAAAAG-G-TGCCACTGACTTGTGGGCTTTG
* * *
3438764 AAAGGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGC
1 AAAGGATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGGTGC
* * * *
3438829 CACTGCCTTGTGGGCTTTGAAAG-GATGTCATTGACTTGTGGGCTTTAAAAGGGTGCCACTGACT
66 CACTGACTTGTGGGCTTTGAAAGAG-TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
3438893 TGTGGGCTTTGAA
130 TGTGGGCTTTGAA
3438906 GAGATGAACG
Statistics
Matches: 429, Mismatches: 46, Indels: 24
0.86 0.09 0.05
Matches are distributed among these distances:
168 15 0.03
169 30 0.07
170 225 0.52
171 17 0.04
172 101 0.24
173 5 0.01
174 10 0.02
175 10 0.02
176 6 0.01
177 10 0.02
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.29
Consensus pattern (168 bp):
AAAGGATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGGTGC
CACTGACTTGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTT
GTGGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTG
Found at i:3440152 original size:1 final size:1
Alignment explanation
Indices: 3440148--3440219 Score: 54
Period size: 1 Copynumber: 72.0 Consensus size: 1
3440138 TTTTTCTTGG
* * ** ** * * * *
3440148 TTTTTTGTTTTTTTGTTTTTTTGGTTTTTTTGGTTTTTTCTGTTTTTTTGTTTTTTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3440213 TTTTTTT
1 TTTTTTT
3440220 GGGTATGAAG
Statistics
Matches: 55, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.00, C:0.01, G:0.12, T:0.86
Consensus pattern (1 bp):
T
Found at i:3440161 original size:8 final size:8
Alignment explanation
Indices: 3440126--3440220 Score: 99
Period size: 8 Copynumber: 11.9 Consensus size: 8
3440116 CTCCTTTCTA
3440126 TTTTTTG-
1 TTTTTTGT
*
3440133 TTATTT-T
1 TTTTTTGT
* *
3440140 TTTCTTGG
1 TTTTTTGT
3440148 TTTTTTGT
1 TTTTTTGT
3440156 TTTTTTGT
1 TTTTTTGT
3440164 TTTTTTGGT
1 TTTTTT-GT
3440173 TTTTTTGGT
1 TTTTTT-GT
3440182 TTTTTCTGT
1 TTTTT-TGT
3440191 TTTTTTGT
1 TTTTTTGT
3440199 TTTTTT-T
1 TTTTTTGT
3440206 TTGTTTT-T
1 TT-TTTTGT
3440214 TTTTTTG
1 TTTTTTG
3440221 GGTATGAAGG
Statistics
Matches: 76, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
7 16 0.21
8 36 0.47
9 23 0.30
10 1 0.01
ACGTcount: A:0.01, C:0.02, G:0.14, T:0.83
Consensus pattern (8 bp):
TTTTTTGT
Found at i:3440204 original size:9 final size:9
Alignment explanation
Indices: 3440148--3440216 Score: 86
Period size: 9 Copynumber: 7.7 Consensus size: 9
3440138 TTTTTCTTGG
3440148 TTTTTTG-T
1 TTTTTTGTT
3440156 TTTTTTGTT
1 TTTTTTGTT
*
3440165 TTTTTGGTT
1 TTTTTTGTT
*
3440174 TTTTTGGTT
1 TTTTTTGTT
*
3440183 TTTTCTGTT
1 TTTTTTGTT
*
3440192 TTTTTGTTTT
1 TTTTT-TGTT
3440202 TTTTTTGTT
1 TTTTTTGTT
3440211 TTTTTT
1 TTTTTT
3440217 TTTGGGTATG
Statistics
Matches: 53, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
8 7 0.13
9 38 0.72
10 8 0.15
ACGTcount: A:0.00, C:0.01, G:0.13, T:0.86
Consensus pattern (9 bp):
TTTTTTGTT
Found at i:3442567 original size:28 final size:28
Alignment explanation
Indices: 3442508--3442579 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
3442498 TTTCACAGTC
*
3442508 GGGGATACTCCAACCCCATTATTTCCGC
1 GGGGATACTCCAACCCCATTATTTCCGA
* * **
3442536 GGGGATACTCTAACCCCGTTATTTTTGA
1 GGGGATACTCCAACCCCATTATTTCCGA
*
3442564 GGGGAAACTCCAACCC
1 GGGGATACTCCAACCC
3442580 TGATTTTATT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.25
Consensus pattern (28 bp):
GGGGATACTCCAACCCCATTATTTCCGA
Found at i:3442647 original size:28 final size:30
Alignment explanation
Indices: 3442615--3442673 Score: 95
Period size: 28 Copynumber: 2.0 Consensus size: 30
3442605 TTTCATAATT
3442615 GGGGATACTCCAA-TCCAG-TTATTTCCAA
1 GGGGATACTCCAACTCCAGTTTATTTCCAA
3442643 GGGGATACTCCAACTCCAGTTTTATTTCCAA
1 GGGGATACTCCAACTCCAG-TTTATTTCCAA
3442674 CACACTAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 13 0.46
29 5 0.18
31 10 0.36
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (30 bp):
GGGGATACTCCAACTCCAGTTTATTTCCAA
Found at i:3442751 original size:159 final size:157
Alignment explanation
Indices: 3442535--3442955 Score: 502
Period size: 159 Copynumber: 2.7 Consensus size: 157
3442525 ATTATTTCCG
* * * * *
3442535 CGGGGATACTCTAACCCCGTTATTTTTGAGGGGAAACTCCAACCCTGATTTTATTTTCAAAACAC
1 CGGGGATACTCCAA-CCCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTTCAAAACAT
* * *
3442600 CAATTTTTCATAATTGGGGATACTCCAATCCAGTTATTTCCAAGGGGATACTCCAA-CTCCAGTT
65 CAATTTTTCACAATCGGGGATACTCCAACCCAGTTATTTCCAAGGGGATACTCCAACCTCCA-TT
* * *
3442664 TTATTTCCAACACACTAATTTTTTAATAAT
129 TTATTTCAAAAACACCAA-TTTTTAATAAT
* *
3442694 CGGGGATACTCCAACTTCGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAT
1 CGGGGATACTCCAAC-CCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTTCAAAACAT
* * * * * *
3442759 CAGTTTTTCACAATCGAGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCTAACCTCGATTT
65 CAATTTTTCACAATCGGGGATACTCCAACCCAGTTATTTCCAAGGGGATACTCCAACCTCCATTT
* *
3442824 TATTTCAAAAATACCAATTTTTCATAAT
130 TATTTCAAAAACACCAATTTTTAATAAT
* * * * * *
3442852 CGGGGATACTCCAACCCTATTATTTCTGAAGAGATACTCCAACCTCGATTTTATTTCCAGAACAT
1 CGGGGATACTCCAACCC-GTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTTCAAAACAT
* * * * *
3442917 CGATTTTTCACAATCGGAGATACTCTAGCCCCGTTATTT
65 CAATTTTTCACAATCGGGGATACTCCAACCCAGTTATTT
3442956 TTGAAAGGAT
Statistics
Matches: 224, Mismatches: 35, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
157 1 0.00
158 99 0.44
159 120 0.54
160 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (157 bp):
CGGGGATACTCCAACCCGTTATTTCTGAGGGGATACTCCAACCCCGATTTTATTTTCAAAACATC
AATTTTTCACAATCGGGGATACTCCAACCCAGTTATTTCCAAGGGGATACTCCAACCTCCATTTT
ATTTCAAAAACACCAATTTTTAATAAT
Found at i:3442974 original size:79 final size:79
Alignment explanation
Indices: 3442535--3442992 Score: 465
Period size: 79 Copynumber: 5.8 Consensus size: 79
3442525 ATTATTTCCG
* * * * *
3442535 CGGGGATACTCTAACCCCGTTATTTTTGAGGGGAAACTCCAACC-CTGATTTTATTTTCAAAACA
1 CGGGGATACTCCAACCCCGTTATTTCTGAAGGGATACTCCAACCTC-GATTTTATTTCCAAAACA
3442599 CCAATTTTTCATAAT
65 CCAATTTTTCATAAT
* * * * * *
3442614 TGGGGATACTCCAATCCAGTTATTTC-CAAGGGGATACTCCAA-CTCCAGTTTTATTTCCAACAC
1 CGGGGATACTCCAACCCCGTTATTTCTGAA-GGGATACTCCAACCTCGA-TTTTATTTCCAAAAC
* *
3442677 ACTAATTTTTTAATAAT
64 ACCAA-TTTTTCATAAT
** * * * * *
3442694 CGGGGATACTCCAACTTCGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAT
1 CGGGGATACTCCAACCCCGTTATTTCTGAAGGGATACTCCAACCTCGATTTTATTTCCAAAACAC
* *
3442759 CAGTTTTTCACAAT
66 CAATTTTTCATAAT
* * * * * *
3442773 CGAGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCTAACCTCGATTTTATTTCAAAAATAC
1 CGGGGATACTCCAACCCCGTTATTTCTGAAGGGATACTCCAACCTCGATTTTATTTCCAAAACAC
3442838 CAATTTTTCATAAT
66 CAATTTTTCATAAT
** * * *
3442852 CGGGGATACTCCAACCCTATTATTTCTGAAGAGATACTCCAACCTCGATTTTATTTCCAGAACAT
1 CGGGGATACTCCAACCCCGTTATTTCTGAAGGGATACTCCAACCTCGATTTTATTTCCAAAACAC
* *
3442917 CGATTTTTCACAAT
66 CAATTTTTCATAAT
* * * * * * *
3442931 CGGAGATACTCTAGCCCCGTTATTTTTGAAAGGATACTCCAACCCCG-TCTTTATCTCCAAAA
1 CGGGGATACTCCAACCCCGTTATTTCTGAAGGGATACTCCAACCTCGAT-TTTATTTCCAAAA
3442993 TATTAAATTT
Statistics
Matches: 305, Mismatches: 67, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
78 4 0.01
79 240 0.79
80 58 0.19
81 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTCTGAAGGGATACTCCAACCTCGATTTTATTTCCAAAACAC
CAATTTTTCATAAT
Found at i:3451501 original size:476 final size:477
Alignment explanation
Indices: 3450872--3460237 Score: 10571
Period size: 476 Copynumber: 19.7 Consensus size: 477
3450862 AAAGAGTGGA
* * * *
3450872 GATGCTTATCTTTTTTAAGGGATGTACTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGAATTCC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * * * *
3450937 ATGCTAATGAAAGTCATCAATATCATTTATACTATTGTGGAGAATGTGTTTAAATTGCCTAATCA
66 ATGCCAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * *
3451002 CAACATGAATGAAGATCATTACTAAAATCCAGGTTTGTCTCATTTAAGGTACGAACTTAGACATT
131 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * *
3451067 ACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCGTCAGTATCATGTATCCTTATG
196 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * * ** *
3451132 AGAAGAATATGTTTATAGTGCTTAATTCTGAAAAAAAGGGGGTTTACCATAACTATTCATGTTTG
261 AGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGTTTG
* * * * * *
3451197 TCGTATTTAAAAGATAAACTTTGATTCTATCAAAAAAAGTGGAAAGAAAAGGTTTTCATAG-GAC
326 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGCGAC
* * *
3451261 ACCAACGCATCAATGTCATGTATCCTAATGAAGGGAATGTATTCTTAGTTCCTAATCTTGAAAAA
391 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAA
* *
3451326 AGTGGAGACAATTATGAGAATC
456 AGTGGAGACTATTACGAGAATC
* * *
3451348 GATGCTTATCTTTTTTAAGGGATGTACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTCC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * * *
3451413 ATGCCAATGAAAATCATCAATACCATTTATCCTATTGTGGAGAATGTGTTTAAACTACCTAATCA
66 ATGCCAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
3451478 CAAAATGAATGAAGATCATTACTAAAAACCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTT
131 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * * *
3451543 ACAAAAATTGGAGGGCAGAGAGCCTTTCTTGCAAAACCAAAGCATCAGTATCGTGTATCCTTCTG
196 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * ** * * * * *
3451608 AGAAGAATATTTTTATAATGCCTAATTTTGAAAAGAAGGGGAATTACTATAACTATTTATGTTTG
261 AGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGTTTG
* * * * *
3451673 TCTTATTTAAGAGATAAGCTTTGATTCTATCAAAAACGGTAGAAAGAAAAGTTTTTCA-TGCGAC
326 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGCGAC
* * * * * *
3451737 ACCAAAGCATCAATGTCATGTATCCTAATGAATGAAATTTGTTCCTGGTTCCCAATCTTGAAAAT
391 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAA
3451802 AGTGGAGACTATTACGAGAATC
456 AGTGGAGACTATTACGAGAATC
* * * * * * *
3451824 GATGCTTATCTTTTTTGATGGATGAACATTGATTTTTAGGAAAATAAGGCAAAGAAAATATTTCC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * **
3451889 ACGCTAA-AAAAATTCATCAATATCTTTTATCCTAATGAGGAGAATGCATTTATAGTGCCTAATC
66 ATGCCAATGAAAA-TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * *
3451953 ACAAAATGAGTGAAGAACATTACTAGAATCCATGTTTGTCTCATTTGAGGTATGAACTTAAGACT
130 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT-AGACT
* * * * *
3452018 TTGCAAAAATTGGGGGGAAGAAAGCCTTTCTTGTGAAGCCAAAGTATCAATATCGTGTATCCTTA
194 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTA
* ** * *
3452083 TGAGAAGACTATGTTTATGATGCCTAA-TCTTGAAAAG-ATTGGGATTAGTATGACTATTAATGG
259 TGAGAAGACTATGTTTATGGTGCCTAATTC-TGAAAAGAAGGGGGATTAGTATGACTATTCATGT
* * * * *
3452146 TTGTCTTATTTAAGAGATAAACTCTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-TTTGT
323 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGC
* * ** * * *
3452210 GACACCAAAGCTTCAATGTCATGTATTCTAATGAAAAGATTGTGTTCTTGCTTCCCAATCTTGAA
388 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAA
* * *
3452275 ATGAA-TGAAGACTGTTACGAGAATC
453 A-AAAGTGGAGACTATTACGAGAATC
* * * * * * * *
3452300 GACGCTTGTCATATTTAAGAGATTAATTTTGATTTTAAGGAAAATAGGGCAAAGTATAGATTTCC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * *
3452365 ATGCAAATGAAATTCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCA
66 ATGCCAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
3452430 CAAAATGAATGAAGATCAATACTAAAATCCATGTTTGTCTCATTTGAGGCAGGACCTTAGGCTTT
131 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * *
3452495 ACGAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAATCAAAGCATCAATATCATGTATCCTTTTG
196 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * *
3452560 AGAAGATTATGTTTATGGTGCCGAA-TCTTGAAAAGAAGGGGGATTACTATGACTATTCATGTTT
261 AGAAGACTATGTTTATGGTGCCTAATTC-TGAAAAGAAGGGGGATTAGTATGACTATTCATGTTT
* * * *
3452624 GTCTTATTTAAAAGACAAACTTTGATTCTATCCAAAACGGTGGAAAGAAAAGCTTTTCA-TGCAA
325 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGCGA
** * *
3452688 CATGAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCTAATCTTGAAAC
390 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAA
* *
3452753 GAGTGGAGACTATTA-AAGAATC
455 AAGTGGAGACTATTACGAGAATC
* * * *
3452775 AATTCTCGTCTTTTTTAAGGGATGTACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAATTT-
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG-ATTTC
* * * *
3452839 TATGCTAATGAAAATCATCAGA-ATCATTTATCCTAATGAGGAGAATGTGTTTAAATTGCCTAAT
65 CATGCCAATGAAAATCATCA-ATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * *
3452903 CACAAAATGAATGAAGATCATTACTAAAATCTATGTTTGTCTCATTTGAGGCATGAACTTAGACT
129 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * *
3452968 TTACAAAAATTGGTGGGAAGGAAGCCTTTCTTGCAAAACCAAAGCGTCAGTATCGTGTA-CCTTT
194 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCC-TT
* * * ** * *
3453032 ATGAGAAGAATATGTTTATAGTGCCTAATTCTAAAAAGAAGAAGAATTACTATGACTATTCATGT
258 ATGAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGT
* * *
3453097 TTGTCTTATTTAAGAGATAAGCTTTGATTCTAT-AAAAAACGGTGGAAAGAAAAGTTTTTCA-TG
323 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAA-GGTGGAAAGAAAAGCTTTTCATTG
* * * * * *
3453160 CGACACCAAAGCATTAATGTCATGTATCCTAATGAATGGAATTTGTTATTTGTTCCGAATCTTGA
387 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTG-
* * * * *
3453225 AAAAAAAT-G-GATTACTACAAGAATT
451 AAAAAAGTGGAGACTATTACGAGAATC
* * * * * *
3453250 GATGCTTGTCTTTTTTGATGGATGAA-TATTGATTTTAGGGAAAATAGGGCAGAGAAATGATTTT
1 GATGCTTGTCTTTTTTAAGGGATGAACT-TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* * ** * *
3453314 CACGCTAAAAAAAATCATCAATATCTTTTATCCTAATGAGGATAATGTGTTTATAGTGCCTAATC
65 CATGCCAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * * *
3453379 ACAAAATGAGTGAAGAACATTACTAGAATCCATGTTTGTCTCTTTTAAGGTACGAACTTAAGACT
130 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT-AGACT
* * ** * *
3453444 TTACAAAATTTGGTGGGAGGAAAGCCTTTCTTATGAAGCCAAAGCATCTATATCGTGTATCCTTA
194 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTA
* *** * *
3453509 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGACTAGAGATTAGTATGACTATTCATGGT
259 TGAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGTT
* * * * *
3453574 TGTCTTAATTAAGAGACAAACTCTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-TTTGTG
324 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGCG
* * ** ** * *
3453638 ACACCAAAGCATCAAAGTCATCTATTGTAATGAAAAGAATGTGTTCTTGCTTTCC-AATCTCGAA
389 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTG-GTTCCTAATCTTGAA
* *
3453702 ATGAA-TGGAGACTGTTACGAGAATC
453 A-AAAGTGGAGACTATTACGAGAATC
* ** * * ***
3453727 GATGCTTGTCATACTTAAGGGTTGAATTTTGATTTTAAGGAAAATAGGGCAAAGTGTAGATTTCC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
3453792 ATGCAAATGAAATTCATCAATATCATTTATCCTAATGAGGAGAAGGTGTTTATAGTGCCTAGTCA
66 ATGCCAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * * *
3453857 CAAAGTGAATGAAGATCAATACTAAAATCCATGTTTGTCTCAATTGACGCAGGACCTTAGACTTT
131 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* *
3453922 ACGAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATAT-GATGTATCCTTAT
196 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG-TGTATCCTTAT
* * * * * * *
3453986 GGGAAGACTATGTTTATGGTGCCAAATACTTAAAAAAAGGGGGATTAGTATGTCTATTTATGTTT
260 GAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGTTT
* * * * * * * *
3454051 GTCTTGTTTAAGAGACAAGCTTTGATTTTATGAAAAACGATGTAAAGAAAAGCTTTTCA-TGAGA
325 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGCGA
* * *
3454115 CACCAAAGCATCAATGTCATGTACCCTAATGAAGAGAATGTGTTCTTGCTTCCTAATCTTGAAAA
390 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAA
* *
3454180 GAA-TGGAAACTGTTACGAGAATC
455 -AAGTGGAGACTATTACGAGAATC
* * * * **
3454203 GATGCTTGTCCTATTTAAGCGATGAATTTTGATTTTAAGGAAAATAATGCAAAGAAAAGATGTT-
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT-TTC
* * * *
3454267 CATG-CAATTGAAAATCATCAATTTCATTTATCCTACTGAGAAGAATGTGTTTAAAGTGCCTAAT
65 CATGCCAA-TGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * *
3454331 CACTAAATGAATAAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCAGGACCTTAGACT
129 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * **
3454396 TTACAAAAATTGGGGGGAAAAAAGCCTTTCTTACGAGACCAAAGTGTC-A-A---TG--T-C--A
194 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTA
* * * * *
3454451 T--G--TA-TATGTTTATGGTGCCGAATCCTGAAAAGAA--AGGATTAGCATGACTATTCATGTT
259 TGAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGTT
* * *
3454509 TGTCTTATTTAAGAGACAAACTATAATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT-ATTGCG
324 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGCG
* * * *
3454573 AAACCAAAGCATCAATGTTATGTATCGTAATGAAGGGAATGTGTTCTTGCTT-CTCAATCTTGAA
389 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCT-AATCTTGAA
* * **
3454637 AAGAGTGGAGACTGTTATAAGAATC
453 AAAAGTGGAGACTATTACGAGAATC
* * *
3454662 GATGCTTGTCTTTTTTAAGAGATGAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGATTTCA
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * * *
3454727 ACGCAAATGAAAATCATCAATATCTTTTATCCTAATGCGGAGAATATGTATATAGTGCCTAATCA
66 ATGCCAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *** *
3454792 CAAAATGAATGAAGAACATAACTAGAATCCATCTTTGTCTCATTTGATTTATGAACTTAGACTTT
131 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * *
3454857 ACAAAAATTGGTGGGAAGAAACCCTTTCTT-CCAAACCAAAGCGTCAATATTGTGTATCCTTATG
196 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * * *
3454921 AGAAGACTATATCTATAGTGCCTAA-TCTTGAAAAGAAGGGGGATTACTATAACTATTCATGTTT
261 AGAAGACTATGTTTATGGTGCCTAATTC-TGAAAAGAAGGGGGATTAGTATGACTATTCATGTTT
* * * * *
3454985 GTCTTATTTAAAAGACAAACTTTGATTCTATCCAAAACGATGGAAAGAAAAGCTTTTCA-TGCAA
325 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGCGA
** * * * *
3455049 CATGAAAGCATGAGTGTCACGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAC
390 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAA
* * *
3455114 GAGTGGAGACTATTCCGAGAATT
455 AAGTGGAGACTATTACGAGAATC
* * ** * * *
3455137 TATTCTCATCTTTTTTAAGGGATGTACTTTGATTTTAAGGAAAATAGGGCAAGGAATAGAATTT-
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG-ATTTC
* * * *
3455201 TATGCTAATGAAAATCATCAGA-ATCATTTATCCTAATAAGGAGAATGTGTTT-TAATTGCCTAA
65 CATGCCAATGAAAATCATCA-ATATCATTTATCCTAATGAGGAGAATGTGTTTAT-AGTGCCTAA
* * * *
3455264 TCACAAAATGATTGAAGATCAATACTAAAATCCATGTTTGTCTCATTTGAGGCACTAACTTAGAC
128 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* *
3455329 TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAGTATCGTGTATCCTT
193 TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT
* * ** * ** * *
3455394 ATGAGAAGAATCTGTTTACAGTGCCTAATTCTGAGAAGAAAAGGAATTACTATGACTATTCATGT
258 ATGAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGT
* * * *
3455459 TTGTCTTATTTAAGAGATAAGCTTTGATTCTAT-AAAAAACGCTGGAGAGAAAAG-TTTTCCA-T
323 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAA-GGTGGAAAGAAAAGCTTTT-CATT
* * *
3455521 GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATTTGTTCTTGGTTTCGT-ATCTT
386 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG-TTCCTAATCTT
* * *
3455585 GAAAAGAGTGGAGACTACTACAAGAATC
450 GAAAAAAGTGGAGACTATTACGAGAATC
* * * * * * *
3455613 AATGCTTGTCTTTTTTGATGGATGAA-TATTGATTTTAGGGAAAATAGGGCAGAGAAATGATTTT
1 GATGCTTGTCTTTTTTAAGGGATGAACT-TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* * * ** * * * * *
3455677 CACGCTAA-AAAAATCATCAGCATCTTTTATCCTAATGAGGATAATATGTTTATACTGCCTAAAC
65 CATGCCAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * ** *
3455741 ACAAAATGAGTGAAGAACATTACTGGAATCCATGTTTGTCTCATTTGAGATACGAATTTAAGACT
130 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT-AGACT
** * *
3455806 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTATGAAGCCAAAGCATCTATATCGTGTATCCTTA
194 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTA
* * *** * *
3455871 TGAGAAGACTATGTTTATGGCGCCTAATCCTGAAAAGATTAGGGATTAGTATGACTATACATGGT
259 TGAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGTT
* * *
3455936 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT-TTTGTG
324 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGCG
** * *
3456000 ACACCAAAGCATCAATGTCATGTA-CTCTAATGAAAAGAATGTGTTCTTGCTTTCC-AATCTCGA
389 ACACCAAAGCATCAATGTCATGTATC-CTAATGAAGGGAATGTGTTCTTG-GTTCCTAATCTTGA
* *
3456063 AATAAA-TGAAGACTGTTACGAGAATC
452 AA-AAAGTGGAGACTATTACGAGAATC
* * * * * * * *** *
3456089 GATGCTTGTCATATTTAAGAGATGAATTTTGATTTTAAAGAATATGGGGCAAAGTGTAGATTTTC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * * *
3456154 ATGCAAATGAAATTCATCAATATCATTTATCTTAATGAGGAGAAGGTGTTTATAGCGTCTAATCA
66 ATGCCAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
3456219 CAAAATGAATGAAGATCACTACTAGAATCCATGTTTGTCTCATTTGAGGCAGGACCTTAGACTTT
131 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * * *
3456284 ATAAAAATTGGGGGGAAGAAAGCCTTTCTTGTGAAGCCAAAGCATCCATATCGTGTATCCTTATC
196 ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATG
* * * *
3456349 AGAAGACTATGTTTATGGTGCCGAATCCTAAAAAGAAGGGGGATTAGTATGGCTATTCATGTTTG
261 AGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGTTTG
* * * * *
3456414 TCTTATTTGAA-AGACAAACTTTGATTCTTTCAAAAACGGTGGAAAGAAAAGTTTTTCA-TACAA
326 TCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGCGA
* * * ** * * * * *
3456477 CACCAAAGTATCAATTTTATGTATCCTAATGAATTGAATTTGTTCATAGTTCAC-ATTCCT-AAA
390 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTC-CTAATCTTGAAA
3456540 AAGAGTGGAGACTATTACGAGAATC
454 AA-AGTGGAGACTATTACGAGAATC
* * * * * *
3456565 GATACTTGTCTTTTTTAAAGGAAGAACTTTGATTTTAATGAAAATATGGCAAAGAAAAGATTTGC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* ** * * ** * * *
3456630 ATGCTAAAAAAAATCTTCAATACCATTTATCCTAATG-GGAAGAACATGTTTATATTGACAAATC
66 ATGCCAATGAAAATCATCAATATCATTTATCCTAATGAGG-AGAATGTGTTTATAGTGCCTAATC
* *
3456694 ACAAAATGAATGAAGATTATTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGACTT
130 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * * *
3456759 TACAAAAATTAGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCATCAGTATCATGTATCCTTAT
195 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * * ** **
3456824 GGGAAGACTAAGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAACATGACTATTCATGTTT
260 GAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGTTT
* * ** * *
3456889 GTCTTATTTAAAAGACAAACTTTGATTCTATCAAGAAAGGCAGAAA-AAAAGC-TTTAATTGTGA
325 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGCGA
* * * *
3456952 CACCAACGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTCTTCGTTCCCAATCTTGAAAA
390 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAA
* *
3457017 GAGTGGAGATTATTACGAGAATC
455 AAGTGGAGACTATTACGAGAATC
* * * ** * * **
3457040 AATGCTTGTCATATTTAAGGGGCGAATTTTGATTTTAAAGAAAATTA-GGCAAAGAGTAGATTTC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTC
* * * * * * *
3457104 C-TGGCAATTGAAAGTCATCAACATCATTTATCCCAATTAGGGGAATGTGTTTATAATGCCTAAT
65 CATGCCAA-TGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * * *
3457168 CACAAAATGAATGAAGATCATCACTAGGATCCGTGTTTGTCTCATTTCAGACACGAACTTAGACT
129 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
** * * *
3457233 TTACAAAAATTGGTCTGAAGAAAGCCTTTCTTGTGAAACGAAAG-ATCAATATCGTGTATCCTTT
194 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTA
* * **
3457297 TGAGAAGACTATGTTTGTTGACCCTAA-TCTTGAAAAGAA-GGGGATTAGTATGACTATTCATGT
259 TGAGAAGACTATGTTTATGGTGCCTAATTC-TGAAAAGAAGGGGGATTAGTATGACTATTCATGT
* * * * * *
3457360 TTGTCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAAGCGGCGAAAAGAAAAGTTTTTGA-TA
323 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-AGGTGGAAAGAAAAGCTTTTCATTG
* * * * * * *
3457423 CGACACCAAAGCGTCAAAGTCTTGCATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATTTTGA
387 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGA
* * * *
3457488 AAAGAGTGGAGACTGTTGCAAGAATC
452 AAAAAGTGGAGACTATTACGAGAATC
* ** * * *
3457514 GATGCTTGTCTTTCTGGATGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * *
3457579 A--CTCAATTGAAAATCATTAAAATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG-CTGAA
66 ATGC-CAA-TGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT-AA
* *
3457641 TCACAAAATGAATTAAGATCATTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGAC
128 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * *
3457706 TTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTC
193 TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT
* * ** * *
3457771 ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGTCTATTAATGT
258 ATGAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGT
* * * *
3457836 TTGTCTTA-TTAAGAGATAAACTTTGATTCTATGAAAAATGGTGGAAAGAAAAGCTTTT-ATTTC
323 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGC
* * *
3457899 GACACCAAGGCATCAATGTCATGTATCCTAATGAAGGGATTGTGTTCTTGGTTCCTAATCATGAA
388 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAA
*
3457964 AAGAA-TGGAGACTATTACGTGAATC
453 AA-AAGTGGAGACTATTACGAGAATC
* * * * * * * *
3457989 GATCCTTGTCATATTTAAGGGATGAATTTTTATATTAAGGAAAATTA-GGCAAA-AGAAGATTTT
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGATTTC
* * *
3458052 CATG-CAATTGAAAATTATCAATATCATTTATCCTAATGGGGAGAATGCGTTTATAGTGCCTAAT
65 CATGCCAA-TGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * *
3458116 CACAAACTGAATGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAGACT
129 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* *
3458181 TTACAGAAATTGGT-GGAAGGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATTCTT
194 TTACAAAAATTGGTGGGAA-GAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT
* * *
3458245 ATGAGAAGACTATGTTTATAGTGCCTAATTTTGAAAAGAAGAGGGATTAGTATGACTATTCATGT
258 ATGAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGT
* * * * * *
3458310 TTGTCTT-TTTGAAGGGACAAGCTTTGATTCTATTAAAAAACGATGAAAAAAAAAGCTTTT-ATT
323 TTGTCTTATTT-AAGAGACAAACTTTGATTCTATCAAAAAA-GGTGGAAAGAAAAGCTTTTCATT
* * * *
3458373 GCGACACGAAATCATCAATGTCATGTATCCTATTGAAGGGATTGTGTTCTTGGTTCCTAATCTTG
386 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTG
3458438 AAAAGAA-TGGAGACTATTACGAGAATC
451 AAAA-AAGTGGAGACTATTACGAGAATC
* * * *
3458465 GATCCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * * * **
3458530 TTG-TAATTAAAAACCAACAATATCATTTATCCTAATGAGGACAATGCATTTACT-GTGCCTAAT
66 ATGCCAA-TGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTGCCTAAT
* *
3458593 CACAAAATGAATGAAGATCAATACTAGAATCC-TCGTTTGTCTCATTTGAGGCACGAACATAGAC
129 CACAAAATGAATGAAGATCATTACTAGAATCCAT-GTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * * *
3458657 TTTACAAAAATTAGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCGTCAGTATCGTGTATCCTT
193 TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT
* * ** *
3458722 ATGAGAAGACTATGTTTATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGTCTATTCATGT
258 ATGAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGT
* ** * * *
3458787 TTGTCTTACTTATTAGATAAACTTTGATTCTATGAAAAATGGTGGAAAGAAAAGCTTTT-ATTGC
323 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGC
*
3458851 GACACCAAGGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAA
388 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAA
* *
3458916 AAGAGTGGAGACTATTACGTGAATC
453 AAAAGTGGAGACTATTACGAGAATC
* * * * * * *
3458941 GAT-CTTTTTCATATTTAAAGGATGAATTTTGATATTAAGGAAAATCA-GGCAAA-AAAGGATTT
1 GATGC-TTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAAT-AGGGCAAAGAAAAGATTT
* * *
3459003 CCATG-CAATTGAAAATCATCAATATCATTTATCCTAATGAGGAGATTGCGTTTATAGTGCCTAC
64 CCATGCCAA-TGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* *
3459067 TCACAAAATAAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
128 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* ** * * * *
3459132 CTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTTAATATCATGTACCCTT
193 TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT
* * * ***
3459197 ATGAGAAGACTATGTTTATAGTGCCTAATTCTGAAAAAAAAGGGGATTAGTATGACTATTTGCGT
258 ATGAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGT
* * * * * *
3459262 TTGTCTT-TTTAGAGGGACAAGCTTTGATTCTATTAGAAAACGATGGAAA-AAAAGGCTTTT-GT
323 TTGTCTTATTTA-AGAGACAAACTTTGATTCTATCA-AAAAAGGTGGAAAGAAAA-GCTTTTCAT
* * *
3459324 TGCGACACTAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCTAATCTT
385 TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTT
* * *
3459389 GAAAAGAGTGGAAACTGTTACGAGAATC
450 GAAAAAAGTGGAGACTATTACGAGAATC
* * * * * **
3459417 GATGCTTGCCATATTTAAAGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAGTAGATTTCC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * * *
3459482 ATG-CAATTGAGAGTCATCAATAACATTTATCCTAATTAGGGGAATGTGTTTATAATGCCTAATC
66 ATGCCAA-TGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * *
3459546 ACAAAATGAATGAAGATCATCACTAGGATTCGTGTTTGTCTCATTTGAGGCACGAACTTAGACTT
130 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
** * * * *
3459611 TACAAAAATTGGTCTGAAGAAAGCCTTTCTTGTGAAACGAAAG-ACCAATATCGTGTATCCTTTT
195 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTAT
* * **
3459675 GAGAAGACTATGTTTGTTGACCCTAA-TCTTGAAAAGAA-GGGGATTAGTATGACTATTCATGTT
260 GAGAAGACTATGTTTATGGTGCCTAATTC-TGAAAAGAAGGGGGATTAGTATGACTATTCATGTT
* * *
3459738 TGTCTTATTTAAGAGACAAACTTTGATTCTAT--AAAAAGCAGCGAAAAGAAAAGTTTTTCA-TG
324 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAG--GTGGAAAGAAAAGCTTTTCATTG
* * * * * * * *
3459800 CGACACCAAAGCGTCAAAGTCTTGCATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATTTTGA
387 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGA
* * * *
3459865 AAAGAGTGGAGACTGTTGCAAGAATC
452 AAAAAGTGGAGACTATTACGAGAATC
** * * *
3459891 GATGCTTGTCTTTTTGGATGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTC
1 GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * *
3459956 A--CTCAATTGAAAATCATTAAAATCATTTATCCTAATAAGGAGAATGTGTTTATAGTG-CTGAA
66 ATGC-CAA-TGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT-AA
*
3460018 TCACAAAATGAATTAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
128 TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * * * *
3460083 TTTACAAAAATTAGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCGTCAGTATCGTGTATTCTT
193 TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT
* ** * *
3460148 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATGAGTATGTCTATTCATGT
258 ATGAGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGT
* * *
3460213 TTGTCTTACTTATGAGATAAACTTT
323 TTGTCTTATTTAAGAGACAAACTTT
3460238 TATCCTAATG
Statistics
Matches: 7545, Mismatches: 1198, Indels: 294
0.83 0.13 0.03
Matches are distributed among these distances:
458 18 0.00
459 336 0.04
460 3 0.00
461 26 0.00
462 1 0.00
463 2 0.00
464 1 0.00
465 1 0.00
466 3 0.00
468 3 0.00
469 1 0.00
470 1 0.00
471 2 0.00
472 11 0.00
473 93 0.01
474 893 0.12
475 1965 0.26
476 3371 0.45
477 806 0.11
478 8 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (477 bp):
GATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
ATGCCAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
ACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATG
AGAAGACTATGTTTATGGTGCCTAATTCTGAAAAGAAGGGGGATTAGTATGACTATTCATGTTTG
TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAAGGTGGAAAGAAAAGCTTTTCATTGCGAC
ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAA
AGTGGAGACTATTACGAGAATC
Found at i:3460439 original size:255 final size:255
Alignment explanation
Indices: 3459981--3460492 Score: 902
Period size: 255 Copynumber: 2.0 Consensus size: 255
3459971 ATTAAAATCA
* * *
3459981 TTTATCCTAATAAGGAGAATGTGTTTATAGTGCTGAATCACAAAATGAATTAAGATCATTACTAG
1 TTTATCCTAATAAGGAGAATGCGTTTATAGTGCTGAATCACAAAATAAATAAAGATCATTACTAG
*
3460046 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCA
66 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACCTTACAAAAATTAGTGGGAAGAAAGCCA
*
3460111 TTCTTGCAAAACCAAAGCGTCAGTATCGTGTATTCTTATGAGAAGACTATGTTTATGGTGCCTAA
131 TTCTTGCAAAACCAAAGCGTCAGTATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
*
3460176 TCCTGAAAAGAATAGGGATGAGTATGTCTATTCATGTTTGTCTTACTTATGAGATAAACT
196 TACTGAAAAGAATAGGGATGAGTATGTCTATTCATGTTTGTCTTACTTATGAGATAAACT
* *
3460236 TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCT-ACTCACAAAATAAATAAAGATCATTACTA
1 TTTATCCTAATAAGGAGAATGCGTTTATAGTG-CTGAATCACAAAATAAATAAAGATCATTACTA
*
3460300 GAATCCATGTTTGTCTCATTTGAGGCACGATA-TTAGACCTTACAAAAATTGGTGGGAAGAAAGC
65 GAATCCATGTTTGTCTCATTTGAGGCACGA-ACTTAGACCTTACAAAAATTAGTGGGAAGAAAGC
*
3460364 CATTCTTGCGAAACCAAAGCGTCAGTATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
129 CATTCTTGCAAAACCAAAGCGTCAGTATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
3460429 AATACTGAAAAGAATAGGGATGAGTATGTCTATTCATGTTTGTCTTACTTATGAGATAAACT
194 AATACTGAAAAGAATAGGGATGAGTATGTCTATTCATGTTTGTCTTACTTATGAGATAAACT
3460491 TT
1 TT
3460493 GATTCTATGA
Statistics
Matches: 245, Mismatches: 10, Indels: 4
0.95 0.04 0.02
Matches are distributed among these distances:
255 242 0.99
256 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (255 bp):
TTTATCCTAATAAGGAGAATGCGTTTATAGTGCTGAATCACAAAATAAATAAAGATCATTACTAG
AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACCTTACAAAAATTAGTGGGAAGAAAGCCA
TTCTTGCAAAACCAAAGCGTCAGTATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
TACTGAAAAGAATAGGGATGAGTATGTCTATTCATGTTTGTCTTACTTATGAGATAAACT
Found at i:3460906 original size:730 final size:728
Alignment explanation
Indices: 3459507--3460937 Score: 1948
Period size: 730 Copynumber: 2.0 Consensus size: 728
3459497 ATCAATAACA
* * * * *
3459507 TTTATCCTAATTAGGGGAATGTGTTTATAATGCCTAATCACAAAATGAATGAAGATCATCACTAG
1 TTTATCCTAATGAGGAGAATGCGTTTATAATGCCTAATCACAAAATAAATAAAGATCATCACTAG
* * * * * *
3459572 GATTCGTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTCTGAAGAAAGCCT
66 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACCTTACAAAAATTGGTCGGAAGAAAGCCA
* * * * *
3459637 TTCTTGTGAAACGAAAGACCAATATCGTGTATCCTTTTGAGAAGACTATGTTTGTTGACCCTAAT
131 TTCTTGCGAAACCAAAGACCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGACCCTAAT
* * *
3459702 CTTGAAAAGAAGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
196 CTTGAAAAGAAAGGGATGAGTATGACTATTCATGTTTGTCTTACTTAAGAGACAAACTTTGATTC
* * * *
3459767 TATAAAAAGCAGCGAAAAGAAAAGTTTTTCATGCGACACCAAAGCGTCAAAGTCTTGCATCCTAA
261 TATAAAAAG-AGCGAAAAGAAAAGCTTTTCATGCCACACCAAAGCATCAAAGTCATGCATCCTAA
* * * * *
3459832 AGAAGGGAATGTGTTTTTGGTTCCCAATTTTGAAAAGAGTGGAGACTGTTGCAAGAATCGATGCT
325 AGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCT
* * * * *
3459897 TGTCTTTTTGGATGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCACTCAA
390 TGTCTATTTGAAGGGATGAACTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTTCCACTCAA
* *
3459962 TTGAAAATCATTAAAATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCTGAATCACAAAAT
455 TTGAAAATCATCAAAATCATTTATCCTAATAAGGAGAATGCGTTTATAGTGCTGAATCACAAAAT
* * *
3460027 GAATTAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
520 AAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACCTTACAAAA
* * **
3460092 ATTAGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCGTCAGTATCGTGTATTCTTATGAGAAGA
585 ATTAGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCGTCAATATCATGTACCCTTATGAGAAGA
* * *
3460157 CTATGTTTATGGTGCCTAATCCTGAAAAGAATA-GGGATGAGTATGTCTATTCATGTTTGTCTTA
650 CTATGTTTATAGTGCCTAATCCTGAAAA-AAAAGGGGATGAGTATGACTATTCATGTTTGTCTTA
3460221 CTTATGAGATAAACT
714 CTTATGAGATAAACT
* * *
3460236 TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTACTCACAAAATAAATAAAGATCATTACTAG
1 TTTATCCTAATGAGGAGAATGCGTTTATAATGCCTAATCACAAAATAAATAAAGATCATCACTAG
*
3460301 AATCCATGTTTGTCTCATTTGAGGCACGATA-TTAGACCTTACAAAAATTGGTGGGAAGAAAGCC
66 AATCCATGTTTGTCTCATTTGAGGCACGA-ACTTAGACCTTACAAAAATTGGTCGGAAGAAAGCC
* **
3460365 ATTCTTGCGAAACCAAAG-CGTCAGTATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
130 ATTCTTGCGAAACCAAAGAC--CAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGACCCT
* * *
3460429 AATAC-TGAAAAGAATAGGGATGAGTATGTCTATTCATGTTTGTCTTACTTATGAGATAAACTTT
193 AAT-CTTGAAAAGAA-AGGGATGAGTATGACTATTCATGTTTGTCTTACTTAAGAGACAAACTTT
* * * * * *
3460493 GATTCTATGAAAAATG-GTGGAAAGAAAAGCTTTT-ATTGCCACACCAAGGTATCAATGTCATGT
256 GATTCTAT-AAAAA-GAGCGAAAAGAAAAGCTTTTCA-TGCCACACCAAAGCATCAAAGTCATGC
* * **
3460556 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTACGTGAAT
318 ATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAAT
* * * * *
3460621 TGAT-CTTTTTCATATTT-AAGGGATGAATTTTGATATTAAGGAAAATCAGGCAAA-AAAGGATT
383 CGATGC-TTGTC-TATTTGAAGGGATGAACTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATT
* *
3460683 TCCA-TGCAATTGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCT-
446 TCCACT-CAATTGAAAATCATCAAAATCATTTATCCTAATAAGGAGAATGCGTTTATAGTG-CTG
*
3460746 ACTCACAAAATAAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
509 AATCACAAAATAAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * * *
3460811 ACCTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTTAATATCATGTACCC
574 ACCTTACAAAAATTAGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCGTCAATATCATGTACCC
* *
3460876 TTATGAGAAGACTATGTTTATAGTGCCTAATTCTGAAAAAAAAGGGGATTAGTATGACTATT
639 TTATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAAAAAGGGGATGAGTATGACTATT
3460938 TGCGTTTGTC
Statistics
Matches: 610, Mismatches: 79, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
728 1 0.00
729 132 0.22
730 283 0.46
731 184 0.30
732 9 0.01
733 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (728 bp):
TTTATCCTAATGAGGAGAATGCGTTTATAATGCCTAATCACAAAATAAATAAAGATCATCACTAG
AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACCTTACAAAAATTGGTCGGAAGAAAGCCA
TTCTTGCGAAACCAAAGACCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGACCCTAAT
CTTGAAAAGAAAGGGATGAGTATGACTATTCATGTTTGTCTTACTTAAGAGACAAACTTTGATTC
TATAAAAAGAGCGAAAAGAAAAGCTTTTCATGCCACACCAAAGCATCAAAGTCATGCATCCTAAA
GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTT
GTCTATTTGAAGGGATGAACTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTTCCACTCAAT
TGAAAATCATCAAAATCATTTATCCTAATAAGGAGAATGCGTTTATAGTGCTGAATCACAAAATA
AATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACCTTACAAAAA
TTAGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCGTCAATATCATGTACCCTTATGAGAAGAC
TATGTTTATAGTGCCTAATCCTGAAAAAAAAGGGGATGAGTATGACTATTCATGTTTGTCTTACT
TATGAGATAAACT
Found at i:3461706 original size:476 final size:474
Alignment explanation
Indices: 3460236--3464023 Score: 4635
Period size: 477 Copynumber: 8.0 Consensus size: 474
3460226 GAGATAAACT
* * *
3460236 TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTACTCACAAAATAAATAAAGATCATTACTAG
1 TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* *
3460301 AATCCATGTTTGTCTCATTTGAGGCACGATA-TTAGACCTTACAAAAATTGGTGGGAAGAAAGCC
66 AATCCATGTTTGTCTCATTTGAGGCACGA-ACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCC
* *
3460365 ATTCTTGCGAAACCAAAGCGTCAGTATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
130 TTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT-GTGCCTA
* * * * * * *
3460430 ATACTGAAAAGAATAGGGATGAGTATGTCTATTCATGTTTGTCTTACTTATGAGATAAACTTTGA
194 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
3460495 TTCTATGAAAAATGGTGGAAAGAAAAGCTTTTATTGCCACACCAAGGTATCAATGTCATGTATCC
259 TTCTATAAAAAATGGTGGAAAGAAAAGCTTTTATTG-CACACCAAAGCATCAATGTCATGTATCC
* * * * *
3460560 TAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTACGTGAATTGAT
323 TAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCGAT
* * * * *
3460625 -CTTTTTCATATTTAAGGGATGAATTTTGATATTAAGGAAAATCAGGCAAA-AAAGGATTTCCAT
388 GC-TTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAT
3460688 GCAATTGAAAATCATCAATATCA
452 GCAATTGAAAATCATCAATATCA
* * *
3460711 TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTACTCACAAAATAAATAAAGATCATTACTAG
1 TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* *
3460776 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACCTTACAAAAATTGGTGGGAAGAAAGCCT
66 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCT
** * * *
3460841 TTCTTGTAAAACCAAAGCGTTAATATCATGTACCCTTATGAGAAGACTATGTTTATAGTGCCTAA
131 TTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT-GTGCCTAA
* * * *** * *
3460906 TTCTGAAAAAAAAGGGGATTAGTATGACTATTTGCGTTTGTCTT-TTTAGAGGGACAAGCTTTGA
195 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA-AGAGACAAACTTTGA
* * * * * *
3460970 TTCTATTAGAAAACGATGGAAA-AAAAGGCTTTTGTTGCGACACTAAATCATCAATGTCATGTAT
259 TTCTA-TAAAAAATGGTGGAAAGAAAA-GCTTTTATTGC-ACACCAAAGCATCAATGTCATGTAT
* * *
3461034 CCTAATGAAGGGAATGTGTTCTTAGTTCCTAATCTTGAAAAGAGTGGAAACTGTTACGAGAATCG
321 CCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCG
* * **
3461099 ATGCTTGTCATATTTAAAGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAGTAGATTTCCA
386 ATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCA
* * **
3461164 TGCAATTGAGAGTCATCAATAAGA
451 TGCAATTGAAAATCATCAATATCA
* * * * * *
3461188 TTTATCCTAATTA-GAGGATTGTGTTTATAATGCCTAATCACAAAAGGAATGAAGATCATCACTA
1 TTTATCCTAATGAGGA-GAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
* * * **
3461252 -AGATCCATGTTTGTCTCATTTGAGGTACGAATTTAGACTTTACAAAAATTGGTCCGAAGAAAGC
65 GA-ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGC
* * * * *
3461316 TTTTCTTGTGAAACCAAAGCATCAATATCGTGTATTCTTTTGAGAAGACTATGTTTAT-TGACCT
129 CTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGTG-CC-
* * *
3461380 TAATCTTGAAAAGAAGGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAAAAACTTT
192 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * * *
3461445 AATTCTATAAAAAATAGCGAAAAGAAAAGTTTTTCATATGC-CACCAAACCATCAATGTC-TGGT
257 GATTCTATAAAAAATGGTGGAAAGAAAAGCTTTT-AT-TGCACACCAAAGCATCAATGTCAT-GT
* * * * *
3461508 ATCCTAATGAGGGGAATGTGTTCTTGGTTCCCAATTTTGAAAAGAGTGGAGGCTGTTGCAAGAAT
319 ATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAAT
* * * *
3461573 CGATGCTTGTC-TTTTTGGATGGATGAACTTTGTTTTTAAGGAAAATAAGGCAAAGAAAAGATTT
384 CGATGCTTGTCATATTT-AAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
* * *
3461637 TCACT-CAATTGAAAATCATTAAAATCA
448 CCA-TGCAATTGAAAATCATCAATATCA
* * *
3461664 TTTATCCTAATAAGGAGAATGTGTTTATAGTG-CTGAATCACAAAATGAATTAAGATCATTACTA
1 TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCT-AATCACAAAATGAATGAAGATCATTACTA
*
3461728 GAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCC
65 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCC
*
3461793 TTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTCATGAGAAGACTATGTTTATGGTGCCTA
130 TTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT-GTGCCTA
* * * * *
3461858 ATCCTAAAAAGAATAGGGATTAGTATGTCTATTAATGTTTGTCTTA-TTAAGAGATAAACTTTGA
194 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
3461922 TTCTATGAAAAATGGTGGAAAGAAAAGCTTTTATTTCGACACCAAGGCATCAATGTCATGTATCC
259 TTCTATAAAAAATGGTGGAAAGAAAAGCTTTTATTGC-ACACCAAAGCATCAATGTCATGTATCC
* * * * * *
3461987 TAATGAAGGGATTGTGTTCTTGGTTCCTAATCATGAAAAGAATGGAGACTATTACGTGAATCGAT
323 TAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCGAT
* * * * * *
3462052 CCTTGTCATATTTAAGGGATGAATTTTTATATTAAGGAAAATTAGGCAAA-AGAAGATTTCCATG
388 GCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATG
*
3462116 CAATTGAAAATTATCAATATCA
453 CAATTGAAAATCATCAATATCA
* * *
3462138 TTTATCCTAATGGGGAGAATGCGTTTATAGTGCCTAATCACAAACTGAATGAAAATCATTACTAG
1 TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * *
3462203 AATCCAGGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAATTGGT-GGAAGGAAAGCC
66 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAA-GAAAGCC
*
3462267 TTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATAGTGCCTA
130 TTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT-GTGCCTA
* * *
3462332 ATTCTGAAAAGAA-GAGGGATTAGTATGACTATTCATGTTTGTCTTTTTTAAGAGACAAGCTTTG
194 ATCCTGAAAAGAATG-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * *
3462396 ATTTTCT-TAAAAAATGATGAAAAAAAAAGCTTTTATTGCGACACGAAATCATCAATGTCATGTA
258 A--TTCTATAAAAAATGGTGGAAAGAAAAGCTTTTATTGC-ACACCAAAGCATCAATGTCATGTA
* * * *
3462460 TCCTATTGAAGGGATTGTGTTCTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATC
320 TCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATC
* * *
3462525 GATCCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
385 GATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCC
* * * * *
3462590 TTGTAATTAAAAACCAACAATATCA
450 ATGCAATTGAAAATCATCAATATCA
* * * *
3462615 TTTATCCTAATGAGGACAATGCATTTATTGTGCCTAATCACAAAATGAATGAAGATCAATACTAG
1 TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * *
3462680 AATCCTTATTTGTCTCATTTGAGGCACAAACCTAGACTTTACAAAAATTAGAGGGAAGAAAGCCT
66 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCT
* * * *
3462745 TTCTTGCGTAACAAAAGTGTCAATATCGTGTATCTTTATGAGAAGACTACT-TTTATGGTGCCTA
131 TTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTA-TGTTTAT-GTGCCTA
* * * *
3462809 ATCCTGAAAAGAATGGGGATAAGTATGACTATTCTTGTTTGTCTTATTTAAGAGACAAACTATAA
194 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* ** * *
3462874 TTCTACAAAAAAACAGTGGAAAGAAAAGCTTTTATTGCGAGACCAAAGCATCAATGTCGTGTATC
259 TTCTA-TAAAAAATGGTGGAAAGAAAAGCTTTTATTGC-ACACCAAAGCATCAATGTCATGTATC
* * * * * *
3462939 CTAATGAAAGGATTGTGTTCTTGGTTCCCAATCCTGAAAAGAGTAGAGATTGTTATGAGAATCGA
322 CTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCGA
* * * * * * *
3463004 TGCTTCTCTTTTTTAATGGATGAACTTTGATTTT-AGAGAGAAT-AGGACAAAGAATATATTTCC
387 TGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAG-GAAAATAAGG-CAAAGAAAAGATTTCC
** * * * * *
3463067 GCGTAGTTGAAAATAATGAATACCA
450 ATGCAATTGAAAATCATCAATATCA
* *
3463092 TTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
1 TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * ** * * *
3463157 AAACCATGTTTTTCTCATTTAAGGCATAAACTTAGGCATTACCAAAATTAGTGGGAAGAAAGCCT
66 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCT
* * * *
3463222 TTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGACTATGTTTATAGAGCCTAA
131 TTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT-GTGCCTAA
* * * * *
3463287 TCCTGAAAAGAATGGGGATTAGTTTAACTATTCATGTTTGTTTTATTTATGAGACAAACATTGAT
195 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
* * * * * *
3463352 TCTAT-CAAAATCGGGGGAAAGAAAAGTTTTTCTTGCAACACCAAAGCATCAAAGTCTTGTATCC
260 TCTATAAAAAAT-GGTGGAAAGAAAAGCTTTTATTGC-ACACCAAAGCATCAATGTCATGTATCC
* * * * *
3463416 TAATGAAGAGAATGTGTTCTTGGTTTCCAAACTTGAAAAGAGTAGAGACTATTACGAGAATCGAT
323 TAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCGAT
* * *
3463481 GCTTGT-GTTTTTCAAGGGATGAACTTTAATTTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCA
388 GCTTGTCATATTT-AAGGGATGAACTTTGA-TTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCA
* * *
3463545 TGCTAA-AGAAAATCATCAGTATGA
451 TGC-AATTGAAAATCATCAATATCA
* ** * * *
3463569 TTTATCCTAATAAGGAGAATGTATTTATAGTGCCAAATCACAAAATGAGTGAAGATCATTATTAG
1 TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
* * * *
3463634 AAACCATATTTGTCTCATTTGAGACACGAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCT
66 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCT
* * * *
3463699 TTTTTGCGAAACCAAAGCATCAATATCATGTATTCTTATGAGAAGACTATGTTTATGGTGCCTAA
131 TTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT-GTGCCTAA
* * * *
3463764 TCCTGAAAACAAGGGGGATTAGTATGTCTATTCATGTTTGCCTTGA-TTAAGAGACAAACTTTGA
195 TCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTT-ATTTAAGAGACAAACTTTGA
* * * *
3463828 TTCTATCAAAAATGGTGTAAAGAAAAGCTTTTCA-TGCGACACCAAAGCATCAATGCCATCTATC
259 TTCTATAAAAAATGGTGGAAAGAAAAGCTTTT-ATTGC-ACACCAAAGCATCAATGTCATGTATC
* * *
3463892 CTAATGAAGGGAATGTATTCTTGGTTCCCAATCTTGAAAAGAGTGGAGATTGTTACGAGAATCGC
322 CTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCGA
* * * * *
3463957 TGCTTGTCTTTTTTAAGAGATGAACTTTGATTTTACA-AAAAAT-AGGACAAAGAAAAAATTTCC
387 TGCTTGTCATATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAAGG-CAAAGAAAAGATTTCC
3464020 ATGC
450 ATGC
3464024 TAAAAAAAAT
Statistics
Matches: 2852, Mismatches: 406, Indels: 109
0.85 0.12 0.03
Matches are distributed among these distances:
473 7 0.00
474 247 0.09
475 439 0.15
476 831 0.29
477 1296 0.45
478 32 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (474 bp):
TTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCT
TTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGTGCCTAAT
CCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
CTATAAAAAATGGTGGAAAGAAAAGCTTTTATTGCACACCAAAGCATCAATGTCATGTATCCTAA
TGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAGAATCGATGCT
TGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
TTGAAAATCATCAATATCA
Found at i:3467253 original size:13 final size:13
Alignment explanation
Indices: 3467235--3467259 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3467225 CAAAGATCAG
3467235 TGTATCGATACAA
1 TGTATCGATACAA
3467248 TGTATCGATACA
1 TGTATCGATACA
3467260 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3467320 original size:13 final size:13
Alignment explanation
Indices: 3467298--3467355 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
3467288 AGCAGTAGCT
*
3467298 TTGTAGCGATACA
1 TTGTATCGATACA
3467311 TTGTATCGATACAAAA
1 TTGTATCGATAC---A
3467327 CTTATGTATCGATACA
1 --T-TGTATCGATACA
3467343 TTGTATCGATACA
1 TTGTATCGATACA
3467356 ACACTTATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 23 0.61
14 1 0.03
16 2 0.05
18 1 0.03
19 11 0.29
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3467336 original size:19 final size:18
Alignment explanation
Indices: 3467312--3467375 Score: 75
Period size: 19 Copynumber: 3.7 Consensus size: 18
3467302 AGCGATACAT
3467312 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
3467331 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
3467344 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
3467363 TGTATCGATACAA
1 TGTATCGATACAA
3467376 TTTCTGTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:3467345 original size:32 final size:32
Alignment explanation
Indices: 3467299--3467374 Score: 134
Period size: 32 Copynumber: 2.4 Consensus size: 32
3467289 GCAGTAGCTT
*
3467299 TGTAGCGATACATTGTATCGATACAAAACTTA
1 TGTATCGATACATTGTATCGATACAAAACTTA
*
3467331 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAAAACTTA
3467363 TGTATCGATACA
1 TGTATCGATACA
3467375 ATTTCTGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAAAACTTA
Found at i:3467773 original size:56 final size:56
Alignment explanation
Indices: 3467712--3467818 Score: 178
Period size: 56 Copynumber: 1.9 Consensus size: 56
3467702 AAATTGGTGG
* *
3467712 GAAAAAAACCTTTCTTGCCAAACCAAAGCTTCAATATCATGTATCCTTATGCGAAT
1 GAAAAAAACCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGCGAAT
* *
3467768 GAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATG
1 GAAAAAAACCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATG
3467819 GGAAGACTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.28
Consensus pattern (56 bp):
GAAAAAAACCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGCGAAT
Found at i:3469442 original size:476 final size:477
Alignment explanation
Indices: 3467772--3474386 Score: 7503
Period size: 476 Copynumber: 13.9 Consensus size: 477
3467762 GCGAATGAAA
** *
3467772 AAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGGGAAGACTATGTTTATGG
1 AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * * * * *
3467837 TGCCTAATCCTAAAAAGAAGGGGGATTAGAATGTCAATTCGTGTTTGTCTTGTTTAAGAGACAAG
66 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAG
*
3467902 CTTTGATTCTATCAAAACCGGTGCAAAGAAAAGCTTTTCATG-CGACACCAAAGCATCAATGTCA
131 CTTTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGTCA
* * * *
3467966 TGTATCTTAATGAAGGGAATGTGTTCTTCGTTCCCAATCCTGAAAAAAGTGGAGACTGTTACGAG
196 TGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAG
* * *
3468031 AATCAATGCTTGTCTTTTTTAAGGGATGAACATTGACTTTAAAGAAAATAGGGCAAAGAATAGAT
261 AATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGAT
* ** *
3468096 TTCCAC-ATAATTA-AAAATAATCGGTATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
326 TTCCACGCTAA--AGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * * *
3468159 AAATCACAAAATGAATGAAGATCATTACTAGAAACCATGTTTGTCTCGTTTGAAGCACAAACCTA
389 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* *
3468224 GACTTTACAAAAATTGGTGCGAA-
454 GACATTACAAAAATTGGTGGGAAG
* * * * *
3468247 AATAGCC-CTCATTGCAAAACCAAAGAGTTAATATCGTCTATCCTTATGAGAAGACTACGTTTAT
1 AA-AGCCTTTC-TTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT
* * * * * * *
3468311 GGTTCCTAATCTTGAAAAGAA-GGGCGATTACTATGTCTATTCGTGTTTGTCTTGTTTATGAGAC
64 GGTGCCTAATCCTGAAAAGAATGGG-GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGAC
* * **
3468375 AAGCTTTGATTCTATCAAAAACC-GTGTAAAGAAAAACATTTCGCG-CGACACCAAAGCATCAAT
128 AAGCTTTGATTCTATC-AAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAAT
* * * *
3468438 GTCATGTAATCCTAAAGAATGGAAAGTGTCCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTT
192 GTCATGT-ATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTT
* *
3468503 ACGAGAATCAATGCTTGTCTTTTTTAAGAGATGAACTTTGATTTTAAAGAAAATAGGGAAAAGAA
256 ACGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAA
* * * * *
3468568 TAGATTTCCAC-CCAATTGAAAATAATCAATATCACTTATCATAATGAGGAGAATGTGTTTATAG
321 AAGATTTCCACGCTAA-AGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * * *
3468632 TGCCTAATCACAAAATGAATGAAGAACATTACTAGAATCCAAGTTTGTCTCATTTAAGGTATGAA
385 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
** *
3468697 CTTAGATGTTACAAAAATTGGAGGGAAG
450 CTTAGACATTACAAAAATTGGTGGGAAG
* * * * *
3468725 AAAGCCTTTCTTGCAAAATCAAAGTGTCAATATCGTGTATCCTTATAAGAAGATTACGTTTATAG
1 AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * * *
3468790 TGCCTAATGCTGGAAAGAA-GTGGATT-GCTATGACTACTCATGTTTGTCTTATTTAAAAGACAA
66 TGCCTAATCCTGAAAAGAATGGGGATTAG-TATGACTATTCATGTTTGTCTTATTTAAGAGACAA
* * * *** * * ** *
3468853 ACTTTGTTTCTATAAAAAATAGTGAAAAGAAAAGTTTTTC-T-TACGATGCCTAAGCATCAATGT
130 GCTTTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGT-CGACACCAAAGCATCAATGT
* * ** **
3468916 CATGTATCCTAATGAAGGGAATTTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTACTATA
194 CATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACG
* * * *
3468981 AGAATCGATGCTTGTCTATTTTAAGGGATGAAC-ATGATTTTAAGGAAAATAGGGCAAAGAAAAG
259 AGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAG
** * * * * * * * * * *
3469045 ATTTTAATGCTAAAGAAAATCATTAGTACCATTTATCCTAATGAGGAGATTATATTGATAATGCC
324 ATTTCCACGCTAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* *
3469110 TAATCACAAAATGAATGAAGAACATTACCAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
389 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
*
3469175 GACATTACAAAAAACTGGTGGGAAG
454 GACATTAC-AAAAATTGGTGGGAAG
* * * * * *
3469200 AAAGCCTTTCCTGCAAAACGAAAGTATCAATATCATGTATCCTTATGAGAAGACTATGTTAATTG
1 AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * * ** *
3469265 TTCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCGTATTTGTCTTACATAAGAGACAAA
66 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAG
* * * * *
3469330 CATTGATTCTATCAAAACCAGTAG-AAAGAAAAGATTTTCTTGTC-ACGCCAAAGCATCAATGTC
131 CTTTGATTCTATCAAAACCGGT-GTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGTC
* * * *
3469393 ATGTATACTAATGAAGGGAAAGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTATGA
195 ATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGA
* * * *
3469458 GAATCGATGCTTGTCTTTTTT-GGAGGATGAACTTTGATTTTAAGGAAAATAGTGCAAAGAAAAG
260 GAATCAATGCTTGTCTTTTTTAAG-GGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAG
* ** * * ** *
3469522 ATTTTCACGCTAAAGAAAATCTTCATTATGATTTATCCTACCGAAGAGAATGTGTTTATAGTGCC
324 ATTTCCACGCTAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * * * * *
3469587 AAATCATAGAATGAATGAAGATCATTATTGGAAACCATGTTTGCCTCATTTGAGGCACGAACATA
389 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* *
3469652 GACTTTACAAAAATTGGTGGGAAA
454 GACATTACAAAAATTGGTGGGAAG
* * *** * *
3469676 AAAGCCTTTCTGGCGAAACCAAAACATCAGTATCTTGTATCCTTATGAGAAGACTATGTTTATGG
1 AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* **
3469741 TGCCTAATCCTG-AAAGAAGGGGGATTAGTATGTTTATTCATGTTTGTC-TATTTTAAGAGACAA
66 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAGAGACAA
** *
3469804 GCTTTGATTCTATCAAAAATGGTGTAAAGAAAAACTTTTCATG-CGACACCAAAGCATCAATGTC
130 GCTTTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGTC
* * * * *
3469868 ATGTGGAATGTGTTACGAGACTTGATGCTTTAATGAATGGAATGTGCTCTTGGTTGCCAATCCTG
195 ATGT---A-----T------C------C--TAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTG
* * * *
3469933 AAACA-AGTGGAGACTGTTACGAGACTCGATGCTTGTCTTTTTTAAGTGATAAACTTTGATTTTA
238 AAA-AGAGTGGAGACTGTTACGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTA
* ** *
3469997 AAGAAAATAGGGCAAAGAATAGATTTCCACG-TAGTTGAAAATAATCAATATCTTTTATCCTAAT
302 AAGAAAATAGGGCAAAGAAAAGATTTCCACGCTA-AAGAAAATAATCAATATCATTTATCCTAAT
* * *
3470061 GAGGAGAATGTGTTTATAGTTCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCTATGTTT
366 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
*
3470126 GTCTCATTTGAGGCACAAACTTAGACATTACAAAAATTGGTGGGAAG
431 GTCTCATTTGAGGCACGAACTTAGACATTACAAAAATTGGTGGGAAG
* * *
3470173 AAAGCCTTTCTTGCAAAGCCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACGATGTCTATGG
1 AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * * *
3470238 TTCCTAATCCTGAAAGGAATGAGGATTAGTATGACTATTCATTTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAG
* * * * * * *
3470303 CATTGATTCTATCAAAACCGGTGGAAGGAAAAGTTTTTCTTAT-GGCACCAAAGCATCAATGTCA
131 CTTTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGTCA
* * * * *
3470367 TGTATCCTAATGAAGTGAATGTGTTCTTGGTTCCTAATCTGGAAAAGAGTGGAGACTATTACGAG
196 TGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAG
* * *
3470432 AATCGATGCTTGTCTTTTTCAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
261 AATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGAT
* * * * * *
3470497 TTCCATGCTAAAGAAACTCAT-AAGTATGATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCA
326 TTCCACGCTAAAGAAAATAATCAA-TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
3470561 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-------G----T--
390 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
*
3470613 ---TTACAAAAATTGGTGAGAA-
455 ACATTACAAAAATTGGTGGGAAG
* * * * * * * *
3470632 AAAGGCCTTTCTTGCGAAACTAAAGTGTTAATAACCTGTATCCTTATAAAAAGACTATGTTTACG
1 AAA-GCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
* * *
3470697 GTGCCTAAATCCTAAAAAGAA-GAGGGATTAGTAT-ATCTATTCATGTTTGTCATGTTTAAGAGA
65 GTGCCT-AATCCTGAAAAGAATG-GGGATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAGA
** *
3470760 CAAGCTTTGATTCTATCAAAAATGGTGAAAAGAAAAGCTTTTCATGT-GACACCAAAGCATCAAT
127 CAAGCTTTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAAT
* * * * * * **
3470824 GTCATGTATCCTAATGAATGGATTATGTTCCTAGTTCCCAATCTTGAAAAAAGTGCAGACCATTA
192 GTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTTA
* *
3470889 CGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTTAAGAAAATA-GG-AAAAAAA
257 CGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAA
* *
3470952 TAGATTTCCACGC-AACTGAAAAATAATCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATA
322 -AGATTTCCACGCTAA-AG-AAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * *
3471016 GTTCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCTATATTTGTCTCATTTGAGGAACAA
384 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
3471081 ACTTAGACATTACAAAAATTGGTGGGAAG
449 ACTTAGACATTACAAAAATTGGTGGGAAG
* * * * **
3471110 AAAGCCTTTATTGCAAAACCAAAATGTCAATATCGTGTATCCTTACGAGAAGACGATGCCTATGG
1 AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * *
3471175 TTCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTGTCTTATTTAAGAGACAAA
66 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAG
* * * * * *
3471240 CATTGATTCTATCAAAACCGATGGAATGAAAAGTTTTTCTTGT-GACACCAAAGCATCAATGTCA
131 CTTTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGTCA
* * * * ** *
3471304 GGTATCCTAATGAAGTGAATGTGTTCTCAGTTCCCAATCTGGAAAAGAGTAAAGACTATTACGAG
196 TGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAG
* * ** * * * *
3471369 AATCGATGCTTGTCTTTTTCAAGATATGAACTTTGATTTTAAGGAAAATAAGGCAAAAAAAATAT
261 AATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGA-
* * * * * * * *
3471434 TTTCCATGCTAAAGAAACTCATCAATATCATTGATCCTAATTAGGAGAATGCGTTTATAATGCCA
325 TTTCCACGCTAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * *
3471499 AATCACAAAACGACTGAAGATCATTATTAGAAACCATGTTTGTCTCATTTGAGGCAGGAACTTAG
390 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
** * *
3471564 ATTTTACAAAAATTGGAGGGAAA
455 ACATTACAAAAATTGGTGGGAAG
** *
3471587 AAAGCCTTTCTTGTGAAACCAAAGTGTCAATATCGTGTATCCTTATAAGAAGACT-TCGTTTATG
1 AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTAT-GTTTATG
* * * *
3471651 GTGCCTAATCTTGAAAAGAAGGGGGATTAGTAT-ATCTATTCATGTTTGTCTTGTTTAAGAGGCA
65 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAGACA
** * * *
3471715 AGCTTTGATTCTATCAAAAATGGTATAAAGAAAAGCTTTTCATG-CAACACCAAAGCATCTATGT
129 AGCTTTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGT
* * *
3471779 CATGTATCCTAATGAACGAAATGTGTTCTTAGTTCCCAATCTTGAAAAAAGTGGAGACTGTTACG
194 CATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACG
* * *
3471844 AGAA-CTAATGCTTGTGTTTTTTAAAGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAATA
259 AGAATC-AATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAA
* * * * *
3471908 GATTGCCACAC-AATTGAAAGTAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTG
323 GATTTCCACGCTAA-AGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * *
3471972 GCTAATCACAAAACT-AATGAAGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGAAGGAAC
387 CCTAATCACAAAA-TGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* * *
3472036 TTGGAC-TTCACAAAAATTGGTGGTATG
451 TTAGACATT-ACAAAAATTGGTGGGAAG
* * * * * *
3472063 AAAG-CTTTCCTTGCGAAATCAAAGTCTCAATATTGTGTATCCTTATAAGAAGACTATGTTTA-C
1 AAAGCCTTT-CTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
* * * * *
3472126 GTGCCTAATCCTGAAAAGAAGGGGGATTAGTAT-ATCTGTTCATGCTTGTCCTATTTAAAAGACA
65 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAGACA
* * *
3472190 AGCTTTGATTCTAACAAAA-AGGTGTAAAGAAAAGCTTTTCAT-ACGACACCAAAGCATCAATGT
129 AGCTTTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGT
* * *
3472253 CATGTATCCTAATGGATGGAATGTGTTCTTACTTCCCAATCTTGAAACA-AGTGGAGACTGTTAC
194 CATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAA-AGAGTGGAGACTGTTAC
*
3472317 GAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAATA
258 GAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAA
** * *
3472382 GATTTCCACGCTATTGAAAATAATCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTTC
323 GATTTCCACGCTAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
3472447 TTAATCACAAAATGAATGAAGATCATTGCTAGAATCTATGTTTGTCTCATTTGAGGAACAAACTT
388 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
3472512 AGACATTACAAAAATTGGTGGGAAG
453 AGACATTACAAAAATTGGTGGGAAG
* * *
3472537 AAAGCCTTTCTTACAAAGCCAAAGTGTCAATATCGTG-ATCCTTATGAGAAGACGATGTCTT-TG
1 AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGT-TTATG
* * * *
3472600 GT-TCTAATCCTGAAAAGAATGGGGGTTAGTATGACAATTCATGTTTATCTTATTTAAGAGACAA
65 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * *
3472664 -ATATTGATTCTATCAAAACCGGTGGAATGAAAAGTTTTTCTTGT-GACACCAAAGCTTCAATGT
130 GCT-TTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGT
* * * * *
3472727 CATGTATCCTAATGAAGTGAATGTGTTCTTGGTTCCCAATCTGGAAAAGAGTGGAGACTATTACA
194 CATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACG
* * * * **
3472792 AGAATCGATGCTTGTCTTTTTCAAAGGATGAA-TTTGATTTT-AAGAAAAATAAGGCATGGAAAA
259 AGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAG-AAAATAGGGCAAAGAAAA
* * * * * * * *
3472855 GATTTTCACGCTAAA-AAAACTCATCAGTATCATTTATCTTAATAAGGAGAATGCGTGTATAATG
323 GATTTCCACGCTAAAGAAAA-TAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * * * *
3472919 CCAAATCAAAAAATTAATGAAGATCATTATTAGAAGCGATGTTTGTCTCATTTGAGGCATGAACT
387 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
** * *
3472984 TAGATTTTACAAAAATTGGAGGGAAA
452 TAGACATTACAAAAATTGGTGGGAAG
** * * * *
3473010 AAAGCCTTTCTTGTGAAACCAAAGTGTCAATATCGTGTGTCCTTATAAGAAGACTATATTTACGG
1 AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* *
3473075 TGCCTAATCCTGAAAAGAATGGGGATTTGTAT-ATCTATT-A---ATG-----TTTAAGAGACAA
66 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAGACAA
* * * **
3473130 GTTTTGATTCTAACAGAAA-TGGTGTAAAGAAAAGCTTTTCATG-CGATTCCAAAGCATCAATGT
130 GCTTTGATTCTATCA-AAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGT
* * *
3473193 CATATATCCTAATGAATGGAATGTGTTCCTAGTTCCCAATCTTGAAACA-AGTGGAGACTGTTAC
194 CATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAA-AGAGTGGAGACTGTTAC
* *
3473257 GAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAGTAGGGCAAAGAATA
258 GAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAA
* * *
3473322 TATTTCCACGC-AATTGAAAATAATCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATAGCT
323 GATTTCCACGCTAA-AGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-T
* **
3473386 -CCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGAAAC-AAT
386 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA-
**
3473449 CTTAGACATTATGAAAATTGGTGGGAAG
450 CTTAGACATTACAAAAATTGGTGGGAAG
* * * *
3473477 AAAGCCTTTCTTGCAAAGCCAAAGTGTCAATTTCGTGTATCCTTACGAGAAGACGATGTCTT-TG
1 AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGT-TTATG
* * * *
3473541 GTTCCTAATCCTGAAAAGAATGGGGATTAGTATGACAATTCATGTTTGTCTTATCTAAAAGACAA
65 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * * * * *
3473606 ACATTGATTCGATCAAATCCGGTGGAATGAAAAGATTTCCTTGT-GACACCAAAGCATCAATGTC
130 GCTTTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGTC
* * * * * *
3473670 ATGTATCCTAATGAAGTGAATGTGTTCCTGGTTCCCAATCTGGAAAAGTGTGGAGACTGTTGCGA
195 ATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGA
**** * * * *
3473735 GAATTGGCGCTTATCTTTTTCAAGGGATGAACGTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
260 GAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGA
* * * * * ** * *
3473800 TTTTCATGCTAAAGAAACTCATCAGTATCATTTATCCTAATTCGGAGAATGCGTTTATAGTGCCA
325 TTTCCACGCTAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * * * **
3473865 AATCACAAAATGAATGAAGATCATTATTAGAAACCATATTTGTCTCACTTAAGATACGAACTTAG
390 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
** * *
3473930 ATTTTACAAAAATTGGAGGGAAA
455 ACATTACAAAAATTGGTGGGAAG
* * * * *
3473953 AAAGCCTTTCTTGCGAAACCAAAGTGTTAATATCATGTATCCTTATAAGAAGACTATGTTTACGG
1 AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * *
3474018 TGCCTAATCCTAAAAAGAAGGGGGATTAGTAT-ATCTATTCATGTTTGTCTTGTTTGAA-AAACA
66 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-CTATTCATGTTTGTCTTATTT-AAGAGACA
* *
3474081 AGCTTTGATTCTATCAAAACTGGTGTAAAGAAAAGCTTTTCATGT-GACACCAAAGCAACAATGT
129 AGCTTTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGT
* * *
3474145 CATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATCTTGAAAAAAAGTGGAGACTGTTAT
194 CATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTG-AAAAGAGTGGAGACTGTTAC
*
3474210 GAGAATCAATGCTTGTCTTTTTTAAGGGATGAAATTTGATTTTAAAGAAAATAGGGCAAA-AAAT
258 GAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAA-
* * * *
3474274 AGAATTCCACGC-AATTGAAAATAATCAATATCATTTATCCTAAAGA-GAAAATGTGTTTATAGT
322 AGATTTCCACGCTAA-AGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* *
3474337 GCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTC
386 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTC
3474387 CTTTAGGGAT
Statistics
Matches: 5160, Mismatches: 832, Indels: 295
0.82 0.13 0.05
Matches are distributed among these distances:
459 11 0.00
460 89 0.02
461 292 0.06
462 2 0.00
465 1 0.00
466 146 0.03
467 229 0.04
468 12 0.00
471 3 0.00
472 9 0.00
473 267 0.05
474 604 0.12
475 408 0.08
476 1624 0.31
477 1030 0.20
478 26 0.01
479 2 0.00
483 1 0.00
484 1 0.00
490 1 0.00
495 2 0.00
496 2 0.00
497 296 0.06
498 100 0.02
499 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (477 bp):
AAAGCCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
TGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAG
CTTTGATTCTATCAAAACCGGTGTAAAGAAAAGCTTTTCATGTCGACACCAAAGCATCAATGTCA
TGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGGAGACTGTTACGAG
AATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGAT
TTCCACGCTAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
ATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
CATTACAAAAATTGGTGGGAAG
Found at i:3474687 original size:353 final size:353
Alignment explanation
Indices: 3474078--3474741 Score: 1123
Period size: 353 Copynumber: 1.9 Consensus size: 353
3474068 TGTTTGAAAA
* *
3474078 ACAAGCTTTGATTCTATCAAAACTGGTGTAAAGAAAAGCTTTTCATGTGACACCAAAGCAACAAT
1 ACAAGCTTTGATTCTATCAAAAATGGTGTAAAGAAAAGCTTTACATGTGACACCAAAGCAACAAT
3474143 GTCATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATCTTGAAAAAAAGTGGAGACTGTT
66 GTCATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATCTTGAAAAAAAGTGGAGACTGTT
* *
3474208 ATGAGAATCAATGCTTGTCTTTTTTAAGGGATGAAATTTGATTTTAAAGAAAATAGGGCAAAAAA
131 ACGAGAACCAATGCTTGTCTTTTTTAAGGGATGAAATTTGATTTTAAAGAAAATAGGGCAAAAAA
* * * *
3474273 TAGAATTCCACGCAATTGAAAATAATCAATATCATTTATCCTAAAGAGAAAATGTGTTTATAGTG
196 TAGAATTCCACACAATTGAAAATAATCAACATCAATTATCCTAAAGAGAAAATGCGTTTATAGTG
* *
3474338 CCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCCTTTAGGGATTATTAT
261 CCTAATCAAAAAATGAATGAAGATAATTACTAGAATCCATATTTATCTCCTTTAGGGATTATTAT
3474403 GACTATTCATATGTGTCTTACTTAAGAG
326 GACTATTCATATGTGTCTTACTTAAGAG
* *
3474431 ACAAGCTTTGATTTTATCAAAAATGGTGTAAAGAAAAGCTTTACATGTGACACCAAAGCATCAAT
1 ACAAGCTTTGATTCTATCAAAAATGGTGTAAAGAAAAGCTTTACATGTGACACCAAAGCAACAAT
3474496 GTCATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATCTTG-AAAAAAGTGGAGACTGTT
66 GTCATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATCTTGAAAAAAAGTGGAGACTGTT
* *
3474560 ACGAGAACCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAA
131 ACGAGAACCAATGCTTGTCTTTTTTAAGGGATGAAATTTGATTTTAAAGAAAATAGGGCAAAAAA
* * * *
3474625 TAGATTTCCACACAATTGAAAATAATCAACATTAATTATCCTAATGAGGAGAATGCGTTTATAGT
196 TAGAATTCCACACAATTGAAAATAATCAACATCAATTATCCTAAAGA-GAAAATGCGTTTATAGT
** *
3474690 GCCTAATCCCAAAATGAATGAAGATAATTACTAGAATCCATATTTGTCTCCT
260 GCCTAATCAAAAAATGAATGAAGATAATTACTAGAATCCATATTTATCTCCT
3474742 GTCAGGAATG
Statistics
Matches: 289, Mismatches: 21, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
352 120 0.42
353 169 0.58
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (353 bp):
ACAAGCTTTGATTCTATCAAAAATGGTGTAAAGAAAAGCTTTACATGTGACACCAAAGCAACAAT
GTCATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATCTTGAAAAAAAGTGGAGACTGTT
ACGAGAACCAATGCTTGTCTTTTTTAAGGGATGAAATTTGATTTTAAAGAAAATAGGGCAAAAAA
TAGAATTCCACACAATTGAAAATAATCAACATCAATTATCCTAAAGAGAAAATGCGTTTATAGTG
CCTAATCAAAAAATGAATGAAGATAATTACTAGAATCCATATTTATCTCCTTTAGGGATTATTAT
GACTATTCATATGTGTCTTACTTAAGAG
Found at i:3477083 original size:12 final size:11
Alignment explanation
Indices: 3477061--3477136 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3477051 AGAGAAAGAA
*
3477061 GAGAGAGGAGG
1 GAGATAGGAGG
3477072 GATGATAGGAGG
1 GA-GATAGGAGG
*
3477084 AGAGACAGGA--
1 -GAGATAGGAGG
*
3477094 GAGATAGTA--
1 GAGATAGGAGG
3477103 GAGATAGGAGG
1 GAGATAGGAGG
3477114 GATGATAGGAGG
1 GA-GATAGGAGG
*
3477126 AGAGACAGGAG
1 -GAGATAGGAG
3477137 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3477093 original size:24 final size:24
Alignment explanation
Indices: 3477060--3477145 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3477050 AAGAGAAAGA
*
3477060 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
3477084 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
3477102 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
3477126 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
3477146 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:3477112 original size:42 final size:42
Alignment explanation
Indices: 3477051--3477169 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3477041 TAGCCCTCAA
* *
3477051 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3477093 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
3477135 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
3477170 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:3483064 original size:476 final size:474
Alignment explanation
Indices: 3482158--3484050 Score: 2328
Period size: 476 Copynumber: 4.0 Consensus size: 474
3482148 TGACTACTCA
* * * *
3482158 CATG-TGTCTTATTTAAGAGACAAGCTTTGATTTTATCAAAAATGGTGTAAAGAAATGCCTTTCA
1 CATGTTGTCTTATTTAAGAGACAAGCTTTGATTCTAACAAAAATGGTGTAAAGAAAAGCTTTTCA
* *
3482222 TGTGACACCAAAGCATCAATGTCGTGTATCATAATGAATGGAATGTGTTCTTAGTTCCCAATCTT
66 TGTGACACCAAAGCATCAATGTCATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATCTT
*
3482287 GAAAAAAGTGGAGACTGTTACGAGAATCAATGCTTGTCTTTTTTAAGGGATGAAATTTGATTTTA
131 GAAAAAAGTGGAGACTGTTACGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTA
* *
3482352 AAGAAAATAGGGCAAAAAATAGATTTCCACGCAATTGAAAATAATCAATATCATTTATCCTAAAG
196 AAGAAAATAGGGCAAAAAATAGATTTCCACGCAATTAAAAATAATCAATATCATTTATCCTAATG
* *
3482417 AGGAAAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTA
261 AGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * *
3482482 TCTCCTTTAAGGAATGGAGTTGGACTTTACAAAAATTGGTGGGATGAAAGCCTTTCTTGCGAAAC
326 TCTCCTTTGAGGAATGAACTTGGACTTTACAAAAATTGGTGGGATGAAAGCCTTTCATGC-AAAC
* * *
3482547 CAAAGTGTCAATATCGTGTATCCTTATAAGAAGACTATGTTTACAGTGCCTAATCCTGAAAAGAA
390 CAAAGTGTCAATATCGTGTATCCTTATGAGAAGAATATGTTTATAGTGCCTAATCCTGAAAAGAA
*
3482612 GGGGGATTAGTTTATCTATT
455 GGGGGATTAGTATATCTATT
*
3482632 CATGTTTGTCTTGTTTAAGAGAC-AGCCTTTGATTCTAACAAAAATGGTGTAAAGAAAAGCTTTT
1 CATG-TTGTCTTATTTAAGAGACAAG-CTTTGATTCTAACAAAAATGGTGTAAAGAAAAGCTTTT
* * *
3482696 TATGTGACACCAAAGCGTCAATGTCATGTATCCTAATGAATGAAATGTGTTCTTAGTTCCCAATC
64 CATGTGACACCAAAGCATCAATGTCATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATC
* * * * *
3482761 TTGAAAAAAGTGGAGATTGTTACAAGAATTAATGTTTGTCTTTGTTAAGGGATGAACTTTGATTT
129 TTGAAAAAAGTGGAGACTGTTACGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTT
* ** * *
3482826 TAAAGAAATTAGGGCAAAAAATAGATTTGTACGCAATTGAAAATAATCAATATCATTTATCCTCA
194 TAAAGAAAATAGGGCAAAAAATAGATTTCCACGCAATTAAAAATAATCAATATCATTTATCCTAA
* *
3482891 TGAGGAAAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTT
259 TGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* *
3482956 TGTCTCCTTTG-GAGAATGAACTTGGATTTTACAAAAATTGGTGGGATGAAAGCCATTCATGCTA
324 TGTCTCCTTTGAG-GAATGAACTTGGACTTTACAAAAATTGGTGGGATGAAAGCCTTTCATGC-A
* *
3483020 AACTAAAGTGTCAATATCGTGTATCCTTATGAGAAGAATATGTTTAT-GCTGCCTAATTCTGAAA
387 AACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAATATGTTTATAG-TGCCTAATCCTGAAA
* *
3483084 AGAATGGAGATTAGTATGA-CTATT
451 AGAAGGGGGATTAGTAT-ATCTATT
* * * *
3483108 CATGTGTGTCTTATTTAAGAGATAAGCTTTGATTTTAAGAAAAATGGTGTAAAGAAAAGCGTTTC
1 CATGT-TGTCTTATTTAAGAGACAAGCTTTGATTCTAACAAAAATGGTGTAAAGAAAAGCTTTTC
* * *
3483173 ATGTGACACCAAAGCAACAATGTCATGTATCCTAATGAA-GTGAATGTGTTTTTGGTTCCCAATC
65 ATGTGACACCAAAGCATCAATGTCATGTATCCTAATGAATG-GAATGTGTTCTTAGTTCCCAATC
* * * * * **
3483237 TGGAAAATAA-TGTAGACTATTACGAGAATCGATGCTTGTCTTTTTTGAGGGATGAACTTTCTTT
129 TTGAAAA-AAGTGGAGACTGTTACGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATT
* * * * * ** * * * *
3483301 TTAAGGAAAATAGGG-AAAAGAAAAAATTTTCATGCTAA--AAAAATCGTTAGTATCTTTTATGC
193 TTAAAGAAAATAGGGCAAAA-AATAGATTTCCACGC-AATTAAAAATAATCAATATCATTTATCC
* * ** * ** * *
3483363 TAATAAGGAGAATGTGTTTATTTTGCCAAATCACAAAATGAATGAAGATCATTGTTAGAAACTAT
256 TAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * * *
3483428 GTTTGTCTCATTTGAGGTACGAACTTAGACTTTAAAAAAATTTGTGGGAAGAAAGCCTTTCTTAT
321 GTTTGTCTCCTTTGAGGAATGAACTTGGACTTTACAAAAATTGGTGGGATGAAAGCCTTTC--AT
** * * * *
3483493 G-AAACCAAAGCATCAATATCCTGTATCCATATGAGAAGATTATGTTTATAGTGCCTAATCCTAA
384 GCAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAATATGTTTATAGTGCCTAATCCTGA
* *
3483557 AAAG-AGTAGGGATTAGTATGTCTA--
449 AAAGAAG-GGGGATTAGTATATCTATT
* * ** * *
3483581 C------TC--ATGTAAGAGACAAGCTTTGATTCCATGAAAAATGATGTAAAAAAAAGCTTTTCA
1 CATGTTGTCTTATTTAAGAGACAAGCTTTGATTCTAACAAAAATGGTGTAAAGAAAAGCTTTTCA
* * * * * *
3483638 TGAGACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTCTAAGCTCCCAATCCT
66 TGTGACACCAAAGCATCAATGTCATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATCTT
* * * *
3483703 -AAAAAGAGTGAAGACTGTTACCAGAATCGATGCTTGTCTTTTTTAAGGGATGAATTTTGATTTT
131 GAAAAA-AGTGGAGACTGTTACGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTT
* * * ** *
3483767 AAGGAAAATAGGGCCAAGAAA-AGA-TTCCAC-AAAAAAAAAATCATCAATATCATTTATCCTAA
195 AAAGAAAATAGGG-CAAAAAATAGATTTCCACGCAATTAAAAATAATCAATATCATTTATCCTAA
* *
3483829 TGAGGAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
259 TGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * *
3483894 TGTCTCCTTTGACGAATGAACTCGGACTTTACAAAAATTGGTGGGGTGAAAGCCTTTCTTGCAAC
324 TGTCTCCTTTGAGGAATGAACTTGGACTTTACAAAAATTGGTGGGATGAAAGCCTTTCATGCAA-
* *
3483959 ACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAATCCTG-AAAG
388 ACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAATATGTTTATAGTGCCTAATCCTGAAAAG
* *
3484023 TAATGGGGATTAGTATAACTATT
453 -AAGGGGGATTAGTATATCTATT
3484046 CATGT
1 CATGT
3484051 GTGAATATCG
Statistics
Matches: 1208, Mismatches: 176, Indels: 75
0.83 0.12 0.05
Matches are distributed among these distances:
461 4 0.00
462 7 0.01
463 201 0.17
464 165 0.14
465 4 0.00
466 5 0.00
473 1 0.00
474 5 0.00
475 200 0.17
476 606 0.50
477 10 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (474 bp):
CATGTTGTCTTATTTAAGAGACAAGCTTTGATTCTAACAAAAATGGTGTAAAGAAAAGCTTTTCA
TGTGACACCAAAGCATCAATGTCATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCCAATCTT
GAAAAAAGTGGAGACTGTTACGAGAATCAATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTA
AAGAAAATAGGGCAAAAAATAGATTTCCACGCAATTAAAAATAATCAATATCATTTATCCTAATG
AGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
TCTCCTTTGAGGAATGAACTTGGACTTTACAAAAATTGGTGGGATGAAAGCCTTTCATGCAAACC
AAAGTGTCAATATCGTGTATCCTTATGAGAAGAATATGTTTATAGTGCCTAATCCTGAAAAGAAG
GGGGATTAGTATATCTATT
Found at i:3484116 original size:84 final size:84
Alignment explanation
Indices: 3483965--3484137 Score: 285
Period size: 84 Copynumber: 2.1 Consensus size: 84
3483955 CAACACCAAA
* *
3483965 GTGTCAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAGTAATGGG
1 GTGTGAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAGTAATAGG
3484030 GATTAGTATAACTATTCAT
66 GATTAGTATAACTATTCAT
3484049 GTGTGAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAG-AATAG
1 GTGTGAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAATCCTG-AAAGTAATAG
* *
3484113 GGATTATTATGACTATTCAT
65 GGATTAGTATAACTATTCAT
*
3484133 ATGTG
1 GTGTG
3484138 TCTTACTTAA
Statistics
Matches: 83, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
84 79 0.95
85 4 0.05
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (84 bp):
GTGTGAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAGTAATAGG
GATTAGTATAACTATTCAT
Found at i:3484868 original size:559 final size:559
Alignment explanation
Indices: 3483507--3485172 Score: 2577
Period size: 559 Copynumber: 3.0 Consensus size: 559
3483497 CCAAAGCATC
* * * * * * *
3483507 AATATCCTGTATCCATATGAGAAGATTATGTTTATAGTGCCTAATCCTAAAAAGAGTAGGGATTA
1 AATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTA
* * ** * * *
3483572 GTATGTCTACTC--A--TG-------TAAGAGACAAGCTTTGATTCCATGAAAAATGATGTAAAA
66 GTATGACTATTCATATGTGTCTTACTTAAGAGACAAGCTTTGATTTTATCAAAAATGGTGTAAAG
* * *
3483626 AAAAGCTTTTCATGAGACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTCTAA
131 AAAAGCTTTTCATGAGACACCAAAGCATCAATGTCATGTATCCTAATGAATGGAATGTGTTCTTA
* * * * * *
3483691 GCTCCCAATCCT-AAAAAGAGTGAAGACTGTTACCAGAATCGATGCTTGTCTTTTTTAAGGGATG
196 GTTCCCAATCTTGAAAAA-AGTGGAGACTGTTACGAGAACCAATGCTTGTCTTTTTTAAGGGATG
* * * * *** *
3483755 AATTTTGATTTTAAGGAAAATAGGGCCAAGAAAAGA-TTCCACAAAAAAAAAATCATCAATATCA
260 AACTTTGATTTTAAAGAAAATAGGGCAAAGAATAGATTTCCACAAATTGAAAATAATCAATATCA
* *
3483819 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCGTAATCACAAAATGAATGAAGATCATTACTAG
325 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCCCAAAATGAATGAAGATCATTACTAG
* *
3483884 AATCCATGTTTGTCTCCTTTGACGAATGAACTCGGACTTTACAAAAATTGGTGGGGTGAAAGCCT
390 AATCCATGTTTGTCTCCTTTGACGAATGAACTTGGACTTTACAAAAATTGGTGGGATGAAAGCCT
*
3483949 TTCTTGCAACACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAA
455 TTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAA
3484014 TCCTGAAAGTAATGGGGATTAGTATAACTATTCATGTGTG
520 TCCTGAAAGTAATGGGGATTAGTATAACTATTCATGTGTG
3484054 AATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTA
1 AATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTA
*
3484119 TTATGACTATTCATATGTGTCTTACTTAAGAGACAAGCTTTGATTTTATCAAAAATGGTGTAAAG
66 GTATGACTATTCATATGTGTCTTACTTAAGAGACAAGCTTTGATTTTATCAAAAATGGTGTAAAG
*
3484184 AAAAGCTTTTCATGTGACACCAAAGCATCAATGTCATGTATCCTAATGAATGGAATGTGTTCTTA
131 AAAAGCTTTTCATGAGACACCAAAGCATCAATGTCATGTATCCTAATGAATGGAATGTGTTCTTA
3484249 GTTCCCAATCTTGAAAAAAGTGGAGACTGTTACGAGAACCAATGCTTGTCTTTTTTAAGGGATGA
196 GTTCCCAATCTTGAAAAAAGTGGAGACTGTTACGAGAACCAATGCTTGTCTTTTTTAAGGGATGA
* *
3484314 ACTTTGATTTTAAAGAAAATAGGGCAAAGAATAGATTTCCACACAATTGAAAATAATCAACATTA
261 ACTTTGATTTTAAAGAAAATAGGGCAAAGAATAGATTTCCACA-AATTGAAAATAATCAATATCA
* * *
3484379 ATTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCCCAAAATGAATGAAGATAATTACTAG
325 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCCCAAAATGAATGAAGATCATTACTAG
* * * * * *
3484444 AATCCATATTTGTCTCCTGTCAGGAATGAACTTGGATTTTACAAGAATTGGTGGGATGAAAGCCT
390 AATCCATGTTTGTCTCCTTTGACGAATGAACTTGGACTTTACAAAAATTGGTGGGATGAAAGCCT
3484509 TTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAA
455 TTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAA
* *
3484574 TCTTGAAAGTAATGGGGATTAGTATAACTATTCATGTTTG
520 TCCTGAAAGTAATGGGGATTAGTATAACTATTCATGTGTG
3484614 AATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCC-AATCCTGAAAAGAATAGGGATTA
1 AATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTA
* * * *
3484678 GTATGACTATTCATGTGTGTCTTATTTAATAGACAAGCTTTGATTTTATCAAAAACGGTGTAAAG
66 GTATGACTATTCATATGTGTCTTACTTAAGAGACAAGCTTTGATTTTATCAAAAATGGTGTAAAG
* * * * *
3484743 GAAAGCTTTTCATGCGACACCAAAGCATGAATGTCATGTATCCTAATGAATGGAATGTCTTCTTT
131 AAAAGCTTTTCATGAGACACCAAAGCATCAATGTCATGTATCCTAATGAATGGAATGTGTTCTTA
*
3484808 GTTCCCAATCTTGAAAAAAATGGAGACTGTTACGAGAACCAATGCTTGTCTTTTTTAAGGGATGA
196 GTTCCCAATCTTGAAAAAAGTGGAGACTGTTACGAGAACCAATGCTTGTCTTTTTTAAGGGATGA
3484873 ACTTTGATTTTAAAGAAAATAGGGCAAAGAATAGATTTCCACATAATTGAAAATAATCAATATCA
261 ACTTTGATTTTAAAGAAAATAGGGCAAAGAATAGATTTCCACA-AATTGAAAATAATCAATATCA
* *
3484938 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCAAATCCCAAATTGAATGAAGATCATTACTAG
325 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCCCAAAATGAATGAAGATCATTACTAG
* * *
3485003 AATCTATGTTTGTCTCTTTTGACGAATGAACTTGGACTATACAAAAATTGGTGGGATGAAAGCCT
390 AATCCATGTTTGTCTCCTTTGACGAATGAACTTGGACTTTACAAAAATTGGTGGGATGAAAGCCT
* * * *
3485068 TTCTTACAAAATCAAAGTGTCAATATCGTGTATCCCTATGAGAAGAATATGTTTATGGTGCCTAA
455 TTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAA
3485133 TCCTGAAAGTAATGGGGATTAGTATAACTATTCATGTGTG
520 TCCTGAAAGTAATGGGGATTAGTATAACTATTCATGTGTG
3485173 TCTTATTTAA
Statistics
Matches: 1020, Mismatches: 85, Indels: 16
0.91 0.08 0.01
Matches are distributed among these distances:
547 67 0.07
549 1 0.00
551 2 0.00
558 179 0.18
559 496 0.49
560 275 0.27
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (559 bp):
AATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTA
GTATGACTATTCATATGTGTCTTACTTAAGAGACAAGCTTTGATTTTATCAAAAATGGTGTAAAG
AAAAGCTTTTCATGAGACACCAAAGCATCAATGTCATGTATCCTAATGAATGGAATGTGTTCTTA
GTTCCCAATCTTGAAAAAAGTGGAGACTGTTACGAGAACCAATGCTTGTCTTTTTTAAGGGATGA
ACTTTGATTTTAAAGAAAATAGGGCAAAGAATAGATTTCCACAAATTGAAAATAATCAATATCAT
TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCCCAAAATGAATGAAGATCATTACTAGA
ATCCATGTTTGTCTCCTTTGACGAATGAACTTGGACTTTACAAAAATTGGTGGGATGAAAGCCTT
TCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGAATATGTTTATGGTGCCTAAT
CCTGAAAGTAATGGGGATTAGTATAACTATTCATGTGTG
Found at i:3489410 original size:33 final size:33
Alignment explanation
Indices: 3489380--3489458 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 33
3489370 TAAAGAGAAC
3489380 GAAGAGATAGGAA-GGATGATAGGAGGAGAGATA
1 GAAGAGATA-GAAGGGATGATAGGAGGAGAGATA
* *
3489413 GTAGAGATAGAAGGGATGATAGGAGGAG-GAGA
1 GAAGAGATAGAAGGGATGATAGGAGGAGAGATA
*
3489445 GAAGAAGATGGAAG
1 GAAG-AGATAGAAG
3489459 AATGAGAGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
32 9 0.22
33 31 0.77
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.11
Consensus pattern (33 bp):
GAAGAGATAGAAGGGATGATAGGAGGAGAGATA
Found at i:3494722 original size:159 final size:155
Alignment explanation
Indices: 3494528--3496132 Score: 402
Period size: 159 Copynumber: 10.2 Consensus size: 155
3494518 TTATGTTTAC
* * * * * *
3494528 GGTGCCTAATCCTGAAAAGAAAGGGGATTAATATGACTATTCATGTTTGCCTTATTTAAGAGACA
1 GGTGCCAAATCCTGAAAAGAATGGAGACTATTATGA-TATTCATGTTTGTCTTATTTAAG-GACA
3494593 AACTTTGATTCTACCAAAAATGATGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATC
64 AACTTTGATTCTA-CAAAAATGATGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATC
3494658 ATGTA-CCATAATGAAAGG-AATGTGTTCTT
128 ATGTATCC-TAATG-AAGGAAATGTGTT-TT
* * * * * * *
3494687 GGTCCCAAATCCTGAAAAGAGTGGAGACTATTATGAGAATCAATGCTTGTGTTTTTTAAGGA-AT
1 GGTGCCAAATCCTGAAAAGAATGGAGACTATTATGATATTC-ATGTTTGTCTTATTTAAGGACA-
* * * * * * * * * ** **
3494751 GAACTTTGATTTTA-AGGAAAATAAGGCAATA-AAAAGATTTCCATGCTA-AAAAAATTATCAAT
64 -AACTTTGATTCTACA--AAAATGATGTAA-AGAAAAGCTTTTCTTACGACACCAAAGCATCAAT
* *
3494813 ATCATTTATCCTACTG-AGGAGAATGTGTTTAT
125 ATCATGTATCCTAATGAAGGA-AATGTGTTT-T
* * * ** * * *
3494845 AGTGCCTAATCAC--AAAATGAATGAAGA-TACCAT-A-ATCCATGTTCT-TCTAATTTGAGGTA
1 GGTGCCAAATC-CTGAAAA-GAATGGAGACTATTATGATATTCATGTT-TGTCTTATTTAAGG-A
** * ** * * * *
3494904 CGGACATAAACTT-TACAAAAATTAGTGTGAAG-AAAGCATTTCTTACGAAACCAAAGCATCAAT
62 CAAACTTTGA-TTCTACAAAAATGA-TGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAAT
* ** *
3494967 ATCATCTATCCTAATGAGAAGGCTATGT-TTAT
125 ATCATGTATCCTAAT--GAAGGAAATGTGTTTT
* * * * * *
3494999 GGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAGAGACA
1 GGTGCCAAATCCTGAAAAGAATGGAGACTATTATGA-TATTCATGTTTGTCTTATTTAAG-GACA
* * * * * *
3495064 AACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCGTCAATGTC
64 AACTTTGATTCTA-CAAAAATGATGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATC
*
3495129 ATGTACCCTAATGAAGGAAATGTGTTCTT
128 ATGTATCCTAATGAAGGAAATGTGTT-TT
* * * * * ** * *
3495158 GGT--AAAATCCTGAAAACAGTGGAGACTATTACGAGAACCGATGCTTAT-TTATTTTAAGGA-A
1 GGTGCCAAATCCTGAAAAGAATGGAGACTATTATGATATTC-ATGTTTGTCTTA-TTTAAGGACA
* * * * * * * * * * **
3495219 TGAACTTTTATTTTA-AGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCTAAAAAAAAGCATCAA
64 --AACTTTGATTCTACA--AAAATGA-TGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
* * *
3495282 TATCATTTATCCTAATG-AGAAAAATGTGTTGAT
124 TATCATGTATCCTAATGAAG-GAAATGTGTT-TT
* * * * * ** *
3495315 AGTGCCTAATCAC--AAAATGAATGAAGA-TCGTTACTAGA-ATCCATGTTCATCTCATTTAAGG
1 GGTGCCAAATC-CTGAAAA-GAATGGAGACT-ATTA-T-GATATTCATGTTTGTCTTATTTAAGG
* * * * ** * *
3495376 CACAAACTTAGACTT-TACAAAAGTTGGTGTAAAG-AAAGCATTTCTTGTGAAACCAAAGCGTCA
61 -ACAAACTTTGA-TTCTACAAAA-ATGATGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATCA
* * *
3495439 ATATCGTCTATCCTAATG-A-GAAGACTATGTTTAT
123 ATATCATGTATCCTAATGAAGGAA-A-TGTGTTT-T
* * * * * *
3495473 GGTGCCGAATCCTAAGAAAA-AA-GG-GATTAGTATGACTATTTATGTTGGTCTTATTTGAGAGA
1 GGTGCCAAATCCT--GAAAAGAATGGAGACTATTATGA-TATTCATGTTTGTCTTATTTAAG-GA
* * * *** *
3495535 CAAACTTTGATTCTATCAAAAAT-AGTGGAAAAAAAAGCTTTTATTGTAACACCAAAGCGTCAAT
62 CAAACTTTGATTCTA-CAAAAATGA-TGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAAT
* * *
3495599 GTCATGTATCCTAATGAAAGG-AAGGTATTCTT
125 ATCATGTATCCTAATG-AAGGAAATGTGTT-TT
* * * * * * * * * *
3495631 GGTTCCCAATCTTGAAAAGAGTAGAGACTGTTATGAGAATCGATGCTTGTATT-TTTCAAGGGA-
1 GGTGCCAAATCCTGAAAAGAATGGAGACTATTATGATATTC-ATGTTTGTCTTATTT-AA-GGAC
* * * * * * * * * ** * *
3495694 AGAACTTTGATTTTA-AGGAAAAT-AGGGCAAAGAAAAGATTTCCATGCTAAAGAAAATCATCAG
63 A-AACTTTGATTCTACA--AAAATGA-TGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
* * ** *
3495757 TATGATTTATCCTAAT-AAAAAGAATGTATTTAT
124 TATCATGTATCCTAATGAAGGA-AATGTGTTT-T
* * * ** * *
3495790 AGTGCCAAAT-CAGAAAATGAATGAAGA-TCATTATTAGA-AACCATGTTTGTCTCATTTGAGGC
1 GGTGCCAAATCCTGAAAA-GAATGGAGACT-ATTA-T-GATATTCATGTTTGTCTTATTTAAGG-
* * * ** * *** * ** *
3495852 GCAAACTTAGACTT-TACAAAAATTGGTGGGAAG-AAAGCCTTTCTTGTAAAACCAAAGTGTCAC
61 ACAAACTTTGA-TTCTACAAAAA-TGATGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAA
* *
3495915 TATCATGTATCCCT-ATG-A-GAAGACTATGTTTAA
124 TATCATGTAT-CCTAATGAAGGAA-A-TGTGTTT-T
* * * * * * **
3495948 GGTG-CTATTCCTGTAAATAATGGGGATTAGTT-TGACTATTTGTGTTTGTCTT-TTTAAGAGAC
1 GGTGCCAAATCCTGAAAAGAATGGAGACTA-TTATGA-TATTCATGTTTGTCTTATTTAAG-GAC
* ** * * * *
3496010 AAATTTTGATTCTATCAAAAATGGGGGAAA-AAAAACTTTTTCTTGCGACACCAAAGCATCAATG
63 AAACTTTGATTCTA-CAAAAATGATGTAAAGAAAAGC-TTTTCTTACGACACCAAAGCATCAATA
*
3496074 TCATGTATCCTAATGAAAGG-AACGTGTTCTT
126 TCATGTATCCTAATG-AAGGAAATGTGTT-TT
* *
3496105 GGTTCCAAATCTTGAAAAGAATGGAGAC
1 GGTGCCAAATCCTGAAAAGAATGGAGAC
3496133 CGCGACAAGA
Statistics
Matches: 1025, Mismatches: 301, Indels: 241
0.65 0.19 0.15
Matches are distributed among these distances:
153 18 0.02
154 61 0.06
155 25 0.02
156 60 0.06
157 238 0.23
158 288 0.28
159 299 0.29
160 26 0.03
161 10 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (155 bp):
GGTGCCAAATCCTGAAAAGAATGGAGACTATTATGATATTCATGTTTGTCTTATTTAAGGACAAA
CTTTGATTCTACAAAAATGATGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATATCATG
TATCCTAATGAAGGAAATGTGTTTT
Found at i:3496227 original size:474 final size:475
Alignment explanation
Indices: 3494329--3500216 Score: 6694
Period size: 474 Copynumber: 12.4 Consensus size: 475
3494319 GGTTGTCATC
* ** * * *
3494329 ATCATCAATATCATTTATCCTAACGAGGAGAATACGTTTATAGTGCCTAATTAGAAAATGAATAA
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * *
3494394 AGATCATTACTAGAATCCATGTTTGTCTCAATTGAGGTACGAACTTAGACTTTACAAAAATTAGT
66 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * *
3494459 AGGAAGAAAGCCTTT-TTTTCAAAACCAAAGCGTCCAA-ATTGTGTATCCTTATGAGGAGATTAT
131 GGGAAGAAAGCCTTTCTTGT-AAAACCAAAGCGT-CAATATCGTGTATCCTTATGAGAAGACTAT
* * * * *
3494522 GTTTACGGTGCCTAATCCTGAAAAGAAAGGGGATTAATATGACTATTCATGTTTGCCTTATTTAA
194 GTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* ** * * *
3494587 GAGACAAACTTTGATTCTACCAAAAATGATGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATC
259 GAGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATC
* * *
3494652 AATATCATGTA-CCATAATGAAAGGAATGTGTTCTTGGTCCCAAATCCTGAAAAGAGTGGAGACT
324 AATGTCATGTATCC-TAATGAAAGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACT
* * * * * *
3494716 ATTATGAGAATCAATGCTTGTGTTTTTTAAGGAATGAACTTTGATTTTAAGGAAAATAAGGCAAT
388 GTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA-
3494781 A-AAAAGATTTCCATGCTAAAAAA
452 AGAAAAGATTTCCATGCTAAAAAA
* *
3494804 ATTATCAATATCATTTATCCTACTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * * * * *
3494869 AG---A-TACCATAATCCATGTTCT-TCTAATTTGAGGTACGGACATAAACTTTACAAAAATTAG
66 AGATCATTACTAGAATCCATGTT-TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * *** * * * * *
3494929 TGTGAAGAAAGCATTTCTTACGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGGCTATG
130 TGGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATG
*
3494994 TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTAAG
195 TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * *
3495059 AGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCGTCA
260 AGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCA
* * * * *
3495124 ATGTCATGTACCCTAATG-AAGGAAATGTGTTCTTGG-T-AAAATCCTGAAAACAGTGGAGACTA
325 ATGTCATGTATCCTAATGAAAGG-AATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTG
* * * *
3495186 TTACGAGAACCGATGCTTAT-TTATTTTAAGGAATGAACTTTTATTTTAAGGAAAATAGGGCAAA
389 TTACGAGAATCGATGCTTGTCTT-TTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAA
3495250 GAAAAGATTTCCATGCTAAAAAAA
453 GAAAAGATTTCCATGCT-AAAAAA
* * * *
3495274 AGCATCAATATCATTTATCCTAATGAGAAAAATGTGTTGATAGTGCCTAATCACAAAATGAATGA
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* ** * * *
3495339 AGATCGTTACTAGAATCCATGTTCATCTCATTTAAGGCACAAACTTAGACTTTACAAAAGTTGGT
66 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
** * * * *
3495404 GTAAAGAAAGCATTTCTTGTGAAACCAAAGCGTCAATATCGTCTATCCTAATGAGAAGACTATGT
131 GGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGT
* * * * *
3495469 TTATGGTGCCGAATCCTAAGAAA-AA-AGGGATTAGTATGACTATTTATGTTGGTCTTATTTGAG
196 TTATGGTGCCTAATCCTAA-AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * * *
3495532 AGACAAACTTTGATTCTATCAAAAATAGTGGAAAAAAAAGCTTTTATTGTAACACCAAAGCGTCA
260 AGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCA
* * * *
3495597 ATGTCATGTATCCTAATGAAAGGAAGGTATTCTTGGTTCCCAATCTTGAAAAGAGTAGAGACTGT
325 ATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTGT
* * * *
3495662 TATGAGAATCGATGCTTGTATTTTTCAAGGGAAGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
390 TACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
3495727 AAAGATTTCCATGCTAAAGAAA
455 AAAGATTTCCATGCTAAA-AAA
* * * ** * * *
3495749 ATCATCAGTATGATTTATCCTAATAAAAAGAATGTATTTATAGTGCCAAATCAGAAAATGAATGA
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * *
3495814 AGATCATTATTAGAAACCATGTTTGTCTCATTTGAGGCGCAAACTTAGACTTTACAAAAATTGGT
66 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * *
3495879 GGGAAGAAAGCCTTTCTTGTAAAACCAAAGTGTCACTATCATGTATCCCTATGAGAAGACTATGT
131 GGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGT
* * ** * * **
3495944 TTAAGGTG-CTATTCCTGTAAATAATGGGGATTAGTTTGACTATTTGTGTTTGTCTT-TTTAAGA
196 TTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* * *
3496007 GACAAATTTTGATTCTATCAAAAATGGGGGAAA-AAAAACTTTTTCTTGCGACACCAAAGCATCA
261 GACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGC-TTTTCTTGCAACACCAAAGCATCA
* * * *
3496071 ATGTCATGTATCCTAATGAAAGGAACGTGTTCTTGGTTCCAAATCTTGAAAAGAATGGAGACCGC
325 ATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTGT
* * * * * * * *
3496136 GACAAGAATCGATGCTTGTCATATTTAGGGGATGAATTTTAATTTTAAGGAAAATAGGGCAAACA
390 TACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* *
3496201 AAAGATTTCTATGC-AAATGGAA
455 AAAGATTTCCATGCTAAA--AAA
* * * *
3496223 ATCATCAATATCATTTATCCAAATGAGGAGAACGTATTTATAGTGCCTAATCACAAAATGAATTA
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * *
3496288 AGGTCATTACTAGAATCCATGTTTGTC-CTATTTGAGGCACGAACTTAGACTCTACAAAAAATGG
66 AGATCATTACTAGAATCCATGTTTGTCTC-ATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * *
3496352 TGGGACGAAAGCCTTTCTTGTGAAACCAAAGCATCAACATCGTGTATCCTTATGAGAAGACTATG
130 TGGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATG
* * * * * ** * *
3496417 TTTATTGTGCCTAATCCAAAAAAGACTAGGGATTAGCAAAACTATTCGTTTTTGTCTTATTTAAG
195 TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
** * *
3496482 AGACAAACTTTGATTGC-AT-AAAAA-GCAATGGAAAGAAAAGCCTTTCTTGCGACACCAAAGCA
260 AGACAAACTTTGATT-CTATCAAAAATG--GGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCA
* ** **
3496544 TCAATGTCAAGTATCCTAATGAAAGGAATGTGTTCTTATTTCCAAAT-TTGAAGTG-GATGGAGA
322 TCAATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAG-TGGAGA
** * * * * * * * * *
3496607 CTGCGACAAGAATCGATGCTTATCATATTT-AGCAGATGAATTTTGATTTTAAGGTATATAAGGC
386 CTGTTACGAGAATCGATGCTTGTCTTTTTTAAG-GGATGAACTTTGATTTTAAGGAAAATAGGGC
* *
3496671 AAAGAAAAGATTTCAATGCAAAAGAAA
450 AAAGAAAAGATTTCCATGCTAAA-AAA
* * * *
3496698 AT-ATCAATATTATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCATAAAATGAATAA
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * *
3496762 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGACTTTACAAAAATTAGA
66 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * * *
3496827 GGGAAGAAAGCCTTTCTT-TCAAAACCAACGCGTTAATATCGGGTATCTTTATGAGAAGAATACG
131 GGGAAGAAAGCCTTTCTTGT-AAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATG
* * * * *
3496891 TTTACGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTACTCATGTTTGTATTATTTAAA
195 TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * *
3496956 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTATTGCGACACTAAAG---C-
260 AGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCA
* * * * *
3497017 -TGTCATGTATTCTAATGAAAGGAATGTGTTCCTT-GTTCCCAATCTTGAAAAGAATGAAGACTA
325 ATGTCATGTATCCTAATGAAAGGAATGTGTT-CTTGGTTCCAAATCTTGAAAAGAGTGGAGACTG
* * * * * ** *
3497080 TTACGAGAATCAAAGCTTGTCATATTTAAGGGAAGAGTTTTAATTTTAA-GAAAATAGGGCAAAG
389 TTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
*
3497144 AACAGATTTCCATGC-AAATGAAA
454 AAAAGATTTCCATGCTAAA--AAA
* *
3497167 TTCATCAATATCATTTATCCTAAAT-AGGAGAATGTGTTTACAGTGCCTAATCACAAAATGACA-
1 ATCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA-AT
* * * * * * *
3497230 -AAGGATCAATACTAGTATCCATGTGTATCTCATTTAAGGCATGAACTTAGACTTTACAAATATT
64 GAA-GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATT
* * * * * * * *
3497294 GGTCGAAAAAAAGCCTTTTTTGTGAAACTAAAGCGTCACTATCATGTATCCTTATGAGAAGACTA
128 GGTGGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTA
* *
3497359 TGTTTATGGTGCCTAATAC-AGAAAAGAA-GGAGGATTAGTTTGACTATTCATGTTTGTCTTATT
193 TGTTTATGGTGCCTAATCCTA-AAAAGAATGG-GGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * * *
3497422 TAAAAGTCAAACTTTCATTCTATCAAAAACGGTGTG-AAGAAAAGCTTTTCTTTCAACACCAAAG
256 TAAGAGACAAACTTTGATTCTATCAAAAATGG-GGGAAAGAAAAGCTTTTCTTGCAACACCAAAG
* * * * * * *
3497486 CATCAATGACATGTACCCTCATGAATGGAATGTGTTCTTGGTCCCAAATCCTGAAAAGAGTGGAA
320 CATCAATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAG
* * * * * * *
3497551 ACTGTTATGAGAATTGATACTTGTCTTTTTTAAAGAAAGAACTTTGATTTTAAGGAAAATAAGGC
385 ACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
* *
3497616 AAGGAAAAGATTTTCATGCTAAAAAAA
450 AAAGAAAAGATTTCCATGCT-AAAAAA
* *
3497643 ATCATCAATATCATATATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
** *
3497708 AGAT-ATTACTAGAATCCATGTTCATCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
66 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * * * * *
3497772 GTGAAGAAAGCATTTCTTGCAAAACCAAAGCATCAATATCGTCTATCCTAAAGAGAAGACTAGGT
131 GGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGT
* * *
3497837 TTATGGTGCCTAATCCTAAAAAGAATGTGGATTAGTATAACTACTCATGTTTGTCTTATTTAAGA
196 TTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
*
3497902 GACAAACTTTGATTCTATCAAAAA-GGGTGGAAAGAAAAGCTTTTATTGCAACACCAAAGCATCA
261 GACAAACTTTGATTCTATCAAAAATGGG-GGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCA
* * * * *
3497966 ATGTCATGTATCCT-ATGAAGGGAATGTGTTCTTGGTTCCTAATC-CGAAAAAGAGTGGAGATTA
325 ATGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCAAATCTTG-AAAAGAGTGGAGACTG
* * * * * * ** * *
3498029 TTAAGAGAATCAATGTTTATCTTTTTTATGGGATGGACTTTGATTTTAAGGAAAATCTGACAAAA
389 TTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
3498094 AAAAGATTTCCATGCTAAAAAAA
454 AAAAGATTTCCATGCT-AAAAAA
* * * * *
3498117 ATCATCAATATCATTTATCCTAAT---GAGAATGCGTGTATAGTTCCCAAACACAAAAT-AAGTG
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA-TG
* * * *
3498178 AAGATCATTACTATAATCCATATTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTAG
65 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * *
3498243 TGAGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATAAGAAGACTACG
130 TGGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATG
* * ** *
3498308 TTCATGGTGCCTATTCCTAAAAAGAATAAGGATTAGTATGACTATTCAT-TTTGTCTTGTTTAAG
195 TTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * *
3498372 AGATAAACATTT-ATTCTATCAAAAATAGTGGAAAGAAAACCTTTTCTTGCAACACCAAAACATC
260 AGACAAAC-TTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATC
* * **
3498436 AATGTCATGTATCCTAA-CAAAGGGAGTGTGTTCTTGGTTTCC-AATCTTGAAAAGAGTGTTGAC
324 AATGTCATGTATCCTAATGAAA-GGAATGTGTTCTTGG-TTCCAAATCTTGAAAAGAGTGGAGAC
* * * * * *
3498499 TGTTATGAGAATCAATGCTTGTCTTTTTTAGGGGATGAACATTGGTTTTAAGGAAAATAGAGCAA
387 TGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAA
*
3498564 AGAAAAGATTTCCACGCTGAAAAAA
452 AGAAAAGATTTCCATGCT-AAAAAA
* * * * * *
3498589 AT-ACCAGTATCAATTATCCTAAAGAGGAGAAGGTGTTTATAGTGCCTAATCATAAAATGAATGA
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * *
3498653 AGATCCTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTATAAAAATTGGT
66 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* ** * * * * * *
3498718 GGGAAGAACGCCTTTCTTGCGAATCCAAAGTGTCACTATCGTGCATCCCTATGAGAAAACTATGT
131 GGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGT
* * * * **
3498783 TTAAGGTGCCTAATCC-AATAAATAATGGGCATTAGTTTGACTATTTGTGTTTGTCTTATTTAAG
196 TTATGGTGCCTAATCCTAA-AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * *
3498847 AGACAAACTTTGATTCTATCAAAAATGGCGAAAAGAAAACCTTTTCTTGCAACACTAAAACATCA
260 AGACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCA
* * *
3498912 ATGGT-ATGTATCCTATTGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAATGGAGACTG
325 AT-GTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTG
** * * * * *
3498976 CGACGAGAATCGATGCTTGTCATATTTAGGGGATGAATTTTAATTTTAA-GAAAATAGGGCAAAG
389 TTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
*
3499040 AATAGATTTCCATGC-AAATGAAA
454 AAAAGATTTCCATGCTAAA--AAA
* ** * * *
3499063 TTCATCAATATCATTTATCCTAAAAAGGAGAATGTATTTACAGTGCCTAATCACAAAATGACT-A
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * * *
3499127 AGGATCAATACTAGAATCCATGTCTGTCTCATTTAAGGCAGGAACTTAGACTTTACAAATATTTG
66 A-GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG
* * * * * * * * *
3499192 TCGAAAAAAAACCTTT-TTTTCGAAACTAAAGCGTCAATATCATGTATCCTTATGAGAAAACTAT
130 TGGGAAGAAAGCCTTTCTTGT-AAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTAT
* * *
3499256 GTTTATGGTGCCTAATAC-AGAAAAGAAGGGGGATTAGT-TGACTATTCATGTTCGTCTTATTTA
194 GTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * * *
3499319 AGAGTCAAACTTTCATTCTATCAAAAACGGTGTG-AAGAAAAGCTTTTCTTTCAACACCAGAGCA
258 AGAGACAAACTTTGATTCTATCAAAAATGG-GGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCA
* * * * *
3499383 TCAATGACATGTA-CTCTAATGAACGGAATGTGTTCTTGGTCCCAAATCCTGAAAATAGTGGAGA
322 TCAATGTCATGTATC-CTAATGAAAGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGA
* * * * *
3499447 CTGTTATGAGAATCGATGCTTGTCTTTTTTAAAGAAAGAATTTTGATTTTAAGGAAAATAGGGCA
386 CTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
*
3499512 AAGAAAAGATTTTCATGCTAAAAAAA
451 AAGAAAAGATTTCCATGCT-AAAAAA
*
3499538 ATCATCAATATCATATATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
**
3499603 AGAT-ATTACTAGAATCCATGTTCATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
66 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * * * * * *
3499667 GTGAAGAAAGCATTTCTTGCAAAACTAAAGCATCAATATCGTCTATCCTAAAGAGAAGACTAGGT
131 GGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGT
* * *
3499732 TTATGGTGCCGAATCCTAAAAAGAATGGGGATTAGTATAACTACTCATGTTTGTCTTATTTAAGA
196 TTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* * * * *
3499797 GATAAATTTTGATTCTATCAAAAA-GGGTGGAAAGAAAAGCTTTTATTGCAACACCAAAGCGTCG
261 GACAAACTTTGATTCTATCAAAAATGGG-GGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCA
* ** *
3499861 ATGTCATGTATCCT-AT-AAAGGGAATGTGTTCTTGGTTCCTAATCCGGAAAAGAGTAGAGACTG
325 ATGTCATGTATCCTAATGAAA-GGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTG
* * * ** * *
3499924 TTAAGAGAATCGATGCTTATCTTTTTTAAGGGATGAACTTTGATTTTAAAGAAAATCCGACAAAA
389 TTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
*
3499989 AAAATATTTCCATGCTAAAAAA
454 AAAAGATTTCCATGCTAAAAAA
* * * * *
3500011 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTGTATAGTTCCCAAACACAAAATAAATGA
1 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * ** * *
3500076 AGATCATTACTAGAATTCATGTTTGTCTCATTTAAGGCAAAAACATAGACTTTACAAAAATTAGT
66 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * *
3500141 GAGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATAAGAAGACTATGT
131 GGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGT
3500206 TTATGGTGCCT
196 TTATGGTGCCT
3500217 GTAGACACTT
Statistics
Matches: 4593, Mismatches: 713, Indels: 215
0.83 0.13 0.04
Matches are distributed among these distances:
468 6 0.00
469 162 0.04
470 385 0.08
471 380 0.08
472 273 0.06
473 220 0.05
474 1642 0.36
475 1319 0.29
476 192 0.04
477 11 0.00
478 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
GGGAAGAAAGCCTTTCTTGTAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGT
TTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAA
TGTCATGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTGTT
ACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
AAGATTTCCATGCTAAAAAA
Found at i:3500571 original size:13 final size:13
Alignment explanation
Indices: 3500553--3500578 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3500543 CATTATTCAA
3500553 TGTATCGATACAT
1 TGTATCGATACAT
3500566 TGTATCGATACAT
1 TGTATCGATACAT
3500579 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3500641 original size:20 final size:19
Alignment explanation
Indices: 3500616--3500690 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 19
3500606 GTTTATCCAG
3500616 ATGTATCGATACATTTTGCA
1 ATGTATCGATACATTTT-CA
*
3500636 ATGTATCGATACATTGCTCA
1 ATGTATCGATACATT-TTCA
* *
3500656 TTGTATTGATACATTTTACA
1 ATGTATCGATACATTTT-CA
3500676 ATGTATCGATACATT
1 ATGTATCGATACATT
3500691 CAGGCATTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.96
21 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (19 bp):
ATGTATCGATACATTTTCA
Found at i:3509180 original size:42 final size:42
Alignment explanation
Indices: 3509125--3509243 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
3509115 TTCTTCTCTC
* *
3509125 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3509167 CTCCTCCTATCATCCCTTCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3509209 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3509244 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3512705 original size:18 final size:19
Alignment explanation
Indices: 3512684--3512729 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
3512674 ATCTTCTTCT
3512684 CTCCTTCTC-CTATCATCC
1 CTCCTTCTCACTATCATCC
* *
3512702 CTCC-TCTCACTATTATCT
1 CTCCTTCTCACTATCATCC
3512720 CTCCTATCTC
1 CTCCT-TCTC
3512730 TCCTCCTATC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 4 0.17
18 15 0.65
20 4 0.17
ACGTcount: A:0.13, C:0.46, G:0.00, T:0.41
Consensus pattern (19 bp):
CTCCTTCTCACTATCATCC
Found at i:3512729 original size:9 final size:9
Alignment explanation
Indices: 3512715--3512775 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
3512705 CTCTCACTAT
3512715 TATCTCTCC
1 TATCTCTCC
3512724 TATCTCTCC
1 TATCTCTCC
* *
3512733 T-CCTAT-C
1 TATCTCTCC
*
3512740 -ATCCCTCC
1 TATCTCTCC
*
3512748 TATCTCTAC
1 TATCTCTCC
*
3512757 AATCTCTCC
1 TATCTCTCC
3512766 TATCTCTCC
1 TATCTCTCC
3512775 T
1 T
3512776 CCTATCATCC
Statistics
Matches: 39, Mismatches: 10, Indels: 6
0.71 0.18 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 32 0.82
ACGTcount: A:0.15, C:0.44, G:0.00, T:0.41
Consensus pattern (9 bp):
TATCTCTCC
Found at i:3512735 original size:12 final size:12
Alignment explanation
Indices: 3512720--3512796 Score: 68
Period size: 12 Copynumber: 5.9 Consensus size: 12
3512710 ACTATTATCT
3512720 CTCCTATCTCTC
1 CTCCTATCTCTC
3512732 CTCCTATCATC-C
1 CTCCTATC-TCTC
3512744 CTCCTATCTCTACAATC
1 CTCCTA--TCT-C--TC
3512761 TCTCCTATCTCTC
1 -CTCCTATCTCTC
3512774 CTCCTATCATC-C
1 CTCCTATC-TCTC
3512786 CTCCTATCTCT
1 CTCCTATCTCT
3512797 TCTTTCTCTT
Statistics
Matches: 55, Mismatches: 0, Indels: 20
0.73 0.00 0.27
Matches are distributed among these distances:
11 2 0.04
12 32 0.58
13 7 0.13
14 3 0.05
15 1 0.02
16 3 0.05
17 1 0.02
18 6 0.11
ACGTcount: A:0.14, C:0.47, G:0.00, T:0.39
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:3512794 original size:42 final size:42
Alignment explanation
Indices: 3512690--3512796 Score: 178
Period size: 42 Copynumber: 2.5 Consensus size: 42
3512680 TTCTCTCCTT
* * **
3512690 CTCCTATCATCCCTCCTCTCACTATTATCTCTCCTATCTCTC
1 CTCCTATCATCCCTCCTATCTCTACAATCTCTCCTATCTCTC
3512732 CTCCTATCATCCCTCCTATCTCTACAATCTCTCCTATCTCTC
1 CTCCTATCATCCCTCCTATCTCTACAATCTCTCCTATCTCTC
3512774 CTCCTATCATCCCTCCTATCTCT
1 CTCCTATCATCCCTCCTATCTCT
3512797 TCTTTCTCTT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.15, C:0.46, G:0.00, T:0.39
Consensus pattern (42 bp):
CTCCTATCATCCCTCCTATCTCTACAATCTCTCCTATCTCTC
Found at i:3514891 original size:159 final size:158
Alignment explanation
Indices: 3514660--3515847 Score: 398
Period size: 159 Copynumber: 7.5 Consensus size: 158
3514650 GAAAGCCTTC
* * * * * * * * *
3514660 CTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATG-AGAAGACTATGTTTACGGTGCCTAAT
1 CTTGTGAAACAAAAGCATCAATATCATCTATCCTAATGAAG-GGAATATGTTTATGGTTCCCAAT
* * * * *
3514724 CCAGAAAAGAATGGGGATTAGTATAACTATTCTTGTATGTCTTATTTAAGAGACAAACTTTAATT
65 CTATAAAAGAATGGAGATCAGTATAA-TATTCATGTATGTCTTATTTAAGAGACAAACTTTAATT
3514789 CTATCAAAAACGGTGGAAAGAAAACCTTTT
129 CTATCAAAAACGGTGGAAAGAAAACCTTTT
* * * *
3514819 CTTGTGACACCAAAGCATCAATGTCATCTATCCTAATGAAGGGAATGTGTTCT-TGGTTCCCAAT
1 CTTGTGAAACAAAAGCATCAATATCATCTATCCTAATGAAGGGAATATGTT-TATGGTTCCCAAT
* * * * * *
3514883 CTTTAAAAGAGTGGAGA-CAGTTATGAGAATCGATGCT-TGTC-TATTTTAA-AG-C--ACTTTG
65 CTATAAAAGAATGGAGATCAG-TATAATATTC-ATG-TATGTCTTA-TTTAAGAGACAAACTTTA
* ** ** * **
3514941 ATTTTAAGGAAAATTGG-GCAAAGAAAA-GATTT
126 ATTCT-ATCAAAAACGGTGGAAAGAAAACCTTTT
* * * * * * **
3514973 CTAG-GCTAAAGAAAATCATCAATATTATTTATCCTAATG-AGGAGAATGA-GTTTATAGTTCTT
1 CTTGTG--AAACAAAAGCATCAATATCATCTATCCTAATGAAGG-GAAT-ATGTTTATGGTTCCC
* * * * * * * *
3515035 AATC-ACAAAATGAGTGAAGATCATTATTAGA-ATCCATGTTTGTCTTATTT--GTGGCATGAAC
62 AATCTATAAAA-GAATGGAGATCAGTA-TA-ATATTCATGTATGTCTTATTTAAGAGACA--AAC
* * *
3515096 -TTAGACTT-TA-CAAAAATTGTTGTG-AAGAAAGCC-TTT
122 TTTA-A-TTCTATCAAAAA-CGGTG-GAAAGAAAACCTTTT
* * * * * * * *
3515132 CTTGCGAAACAAAAGCATCAATATCGTGTATCCTTAT-AAGAGGACTATGTTTACGGTGCCTAAT
1 CTTGTGAAACAAAAGCATCAATATCATCTATCCTAATGAAG-GGAATATGTTTATGGTTCCCAAT
* * * * * *
3515196 CCAGAAAAGAATGGGGATTAGTATAATTATTCATGTATGTCTTATTTAAGAGACAAACTCTGATT
65 CTATAAAAGAATGGAGATCAGTATAA-TATTCATGTATGTCTTATTTAAGAGACAAACTTTAATT
3515261 CTATCAAAAACGGTGGAAAGAAAACCTTTT
129 CTATCAAAAACGGTGGAAAGAAAACCTTTT
* * * *
3515291 CTTGTGACACCAAAGCATCAATGTCATCTATCCTAATGAAGGGGATATGTTCT-TGGTTCCCAAT
1 CTTGTGAAACAAAAGCATCAATATCATCTATCCTAATGAAGGGAATATGTT-TATGGTTCCCAAT
* * * * * * * * ** *
3515355 CTTTAAAAGAGTGAAGA-CTGTTATGAGA-ATTAACGCT-TGTCTTTTTTAAGGGATGAACTTTG
65 CTATAAAAGAATGGAGATCAG-TAT-A-ATATTCATG-TATGTCTTATTTAAGAGACAAACTTTA
* ** * **
3515417 ATTTTAT-AGAAAA-TTTGGCACAGAAAA-GATTT
126 ATTCTATCA-AAAACGGTGG-AAAGAAAACCTTTT
* * * * *** * * *
3515449 CAATGCT-AAAGAAAATCATCAATATCATTTATCCTAATG-AGGAGAATGCATTTATAGTGCCTA
1 C-TTG-TGAAACAAAAGCATCAATATCATCTATCCTAATGAAGG-GAATATGTTTATGGTTCCCA
* * * * * * * * ** *
3515512 ATC-ACAAAATGAATGAAGATCATTACTAGA-ATCCATGTTTTTCTCATTTGAGTCACGAACTTG
63 ATCTATAAAA-GAATGGAGATCAGTA-TA-ATATTCATGTATGTCTTATTTAAGAGACAAACTT-
* * * * *
3515575 GACTT-TA-CAAAAATTGGTGCG-AAG-AAAGCTTTC
124 TAATTCTATCAAAAA-CGGTG-GAAAGAAAACCTTTT
* * * * * * * * * *
3515608 CTTGCCG-AACCAAAGCATCACTATCGTGTATCCTTATG-AGAAGACTATGTTTACGGTGT-CTA
1 CTTG-TGAAACAAAAGCATCAATATCATCTATCCTAATGAAG-GGAATATGTTTATGGT-TCCCA
* * * * * *
3515670 ATCCAGAAAAGAATGGGGATTAGTATAACTATTCATGTATGGCTTATTTAAGAGACAAACTTTGA
63 ATCTATAAAAGAATGGAGATCAGTATAA-TATTCATGTATGTCTTATTTAAGAGACAAACTTTAA
*
3515735 TTCTATCAAAAATTGG-GGAAAGAAAACCTTTT
127 TTCTATCAAAAA-CGGTGGAAAGAAAACCTTTT
* * * * * * *
3515767 CTTCTGACACCAAACCATAAATGTCA-CATATCCTAATGAAGGGAATGTGTTCT-TGGTTCCCAA
1 CTTGTGAAACAAAAGCATCAATATCATC-TATCCTAATGAAGGGAATATGTT-TATGGTTCCCAA
*
3515830 TCT-TGAAAAGAGTGGAGA
64 TCTAT-AAAAGAATGGAGA
3515848 CTGTTATGAG
Statistics
Matches: 737, Mismatches: 210, Indels: 164
0.66 0.19 0.15
Matches are distributed among these distances:
153 1 0.00
154 16 0.02
155 80 0.11
156 16 0.02
157 17 0.02
158 212 0.29
159 366 0.50
160 27 0.04
161 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (158 bp):
CTTGTGAAACAAAAGCATCAATATCATCTATCCTAATGAAGGGAATATGTTTATGGTTCCCAATC
TATAAAAGAATGGAGATCAGTATAATATTCATGTATGTCTTATTTAAGAGACAAACTTTAATTCT
ATCAAAAACGGTGGAAAGAAAACCTTTT
Found at i:3515677 original size:476 final size:475
Alignment explanation
Indices: 3514422--3518395 Score: 5480
Period size: 476 Copynumber: 8.4 Consensus size: 475
3514412 TTTTCGTCAT
* * *
3514422 GACTGTTGTGAGAATCGATGCTTGTCTTTTTTAAAGGATGAACCTTGATTTTATAGAAAATTGGG
1 GACTGTTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTA-AGAAAATTGGG
* *
3514487 CATAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATACGT
65 CAAAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGT
*
3514552 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTGGAATCCATGTTTGTCTCATTTGAGG
130 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * *
3514617 CATGAACTTAGACTTTACAAAAATTGGTGTGAAGAAAGCCTTCCTTGTGAAACCAAAGCATCAAT
195 CACGAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAAT
3514682 ATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTA
260 ATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTA
* * *
3514747 TAACTATTCTTGTATGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGAAA
325 TAACTATTCATGTATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
*
3514812 ACCTTTTCTTGTGACACCAAAGCATCAATGTCATCTATCCTAATGAAGGGAATGTGTTCTTGGTT
390 ACCTTTTCTTGTGACACCAAAGCATCAATGTCAACTATCCTAATGAAGGGAATGTGTTCTTGGTT
*
3514877 CCCAATCTTTAAAAGAGTGGA
455 CCCAATCTTGAAAAGAGTGGA
* * *
3514898 GACAGTTATGAGAATCGATGCTTGTCTATTTTAA---A-GCACTTTGATTTTAAGGAAAATTGGG
1 GACTGTTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAA-GAAAATTGGG
* * * *
3514959 CAAAGAAAAGATTTCTAGGCTAAAGAAAATCATCAATATTATTTATCCTAATGAGGAGAATGAGT
65 CAAAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGT
* * * * * *
3515024 TTATAGTTCTTAATCACAAAATGAGTGAAGATCATTATTAGAATCCATGTTTGTCTTATTTGTGG
130 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * * *
3515089 CATGAACTTAGACTTTACAAAAATTGTTGTGAAGAAAGCCTTTCTTGCGAAACAAAAGCATCAAT
195 CACGAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAAT
* *
3515154 ATCGTGTATCCTTATAAGAGGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTA
260 ATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTA
* * *
3515219 TAATTATTCATGTATGTCTTATTTAAGAGACAAACTCTGATTCTATCAAAAACGGTGGAAAGAAA
325 TAACTATTCATGTATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* * *
3515284 ACCTTTTCTTGTGACACCAAAGCATCAATGTCATCTATCCTAATGAAGGGGATATGTTCTTGGTT
390 ACCTTTTCTTGTGACACCAAAGCATCAATGTCAACTATCCTAATGAAGGGAATGTGTTCTTGGTT
* *
3515349 CCCAATCTTTAAAAGAGTGAA
455 CCCAATCTTGAAAAGAGTGGA
** * *
3515370 GACTGTTATGAGAATTAACGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTATAGAAAATTTGG
1 GACTGTTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTA-AGAAAATTGGG
* * *
3515435 CACAGAAAAGATTTCAATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCAT
65 CAAAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGT
* *
3515500 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTTTCTCATTTGAGT
130 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * *
3515565 CACGAACTTGGACTTTACAAAAATTGGTGCGAAGAAAGCTTTCCTTGCCG-AACCAAAGCATCAC
195 CACGAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTCCTTG-CGAAACCAAAGCATCAA
*
3515629 TATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGTCTAATCCAGAAAAGAATGGGGATTAGT
259 TATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGT
* *
3515694 ATAACTATTCATGTATGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGG-GGAAAGA
324 ATAACTATTCATGTATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAAAGA
* * *
3515758 AAACCTTTTCTTCTGACACCAAACCATAAATGTC-ACATATCCTAATGAAGGGAATGTGTTCTTG
388 AAACCTTTTCTTGTGACACCAAAGCATCAATGTCAAC-TATCCTAATGAAGGGAATGTGTTCTTG
3515822 GTTCCCAATCTTGAAAAGAGTGGA
452 GTTCCCAATCTTGAAAAGAGTGGA
* * * *
3515846 GACTGTTATGAGAATCAACGCTTGTCTTTTTTAAGGGATGAACTTTGTTTTTATGATAAATTGGG
1 GACTGTTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGA-AAATTGGG
* *
3515911 TATAA-AAAAGAATTT-CATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATAC
65 CA-AAGAAAAG-ATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGC
* *
3515974 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTGGAATCCATGTTTATCTCATTTGA
128 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
*
3516039 GGCACGAACTTAGACTTTACAAAAATTGGTGCAAAGAAAGCCTTCCTTGCGAAACCAAAGCATCA
193 GGCACGAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCA
* * * * * *
3516104 ATATCGTGTATCCTGATGAGAAGAGTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAG
258 ATATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAG
* * *
3516169 TATCACTATTCATG--TGCCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGGTGGAAATA
323 TATAACTATTCATGTATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* ** * * * *
3516232 AAACATTTTCTTACGACACCAAAGCATCATTGTCAAGTATCCTAATGAAGAGAATGTGTTCTTAG
388 AAACCTTTTCTTGTGACACCAAAGCATCAATGTCAACTATCCTAATGAAGGGAATGTGTTCTTGG
* * *
3516297 CTCCCAATATTGAAAAGAATGGA
453 TTCCCAATCTTGAAAAGAGTGGA
* * * * * * *
3516320 GGCTACGTCA--AGAATCGATACTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAG
1 GACT--GTTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAA-GAAAATTG
* * * *
3516383 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGGATGT
63 GGCAAAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGC
* * *
3516448 GTTCATAGTGCCTACTCACAAAATGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCATTTGA
128 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * *
3516513 GGCATGAACTTAGACTTTACAAAAATTGTTGTGAAGAAAGCCTTCCTTGCCG-AACCAAAGCATC
193 GGCACGAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTCCTTG-CGAAACCAAAGCATC
* *
3516577 ACTATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGTCTAATCCAGAAAAGAATGGGGATTA
257 AATATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTA
* *
3516642 GTATAACTATTCATGTATGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGG-GGAAA
322 GTATAACTATTCATGTATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAAA
* * *
3516706 GAAAACCTTTTCTTCTGACACCAAACCATAAATGTC-ACATATCCTAATGAAGGGAATGTGTTCT
386 GAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCAAC-TATCCTAATGAAGGGAATGTGTTCT
3516770 TGGTTCCCAATCTTGAAAAGAGTGGA
450 TGGTTCCCAATCTTGAAAAGAGTGGA
* * * *
3516796 GACTGTTATGAGAATCAACGCTTGTCTTTTTTAAGGGATGAACTTTGTTTTTATGATAAATTGGG
1 GACTGTTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGA-AAATTGGG
* *
3516861 TATAA-AAAAGAATTT-CATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATAC
65 CA-AAGAAAAG-ATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGC
* *
3516924 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTGGAATCCATGTTTATCTCATTTGA
128 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
*
3516989 GGCACGAACTTAGACTTTACAAAAATTGGTGCAAAGAAAGCCTTCCTTGCGAAACCAAAGCATCA
193 GGCACGAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCA
* * * * * *
3517054 ATATCGTGTATCCTGATGAGAAGAGTATATTTATGGTGCCTAATCCTGAAAAGAATGGGGATCAG
258 ATATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAG
* * *
3517119 TATCACTATTCATG--TGCCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGGTGGAAATA
323 TATAACTATTCATGTATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* ** * * * *
3517182 AAACATTTTCTTACGACACCAAAGCATCATTGTCAAGTATCCTAATGAAGAGAATGTGTTCTTAG
388 AAACCTTTTCTTGTGACACCAAAGCATCAATGTCAACTATCCTAATGAAGGGAATGTGTTCTTGG
* * *
3517247 CTCCCAATATTGAAAAGAATGGA
453 TTCCCAATCTTGAAAAGAGTGGA
* * * * * * *
3517270 GGCTACGTCA--AGAATCGATACTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAG
1 GACT--GTTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAA-GAAAATTG
* * * *
3517333 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGGATGT
63 GGCAAAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGC
* * *
3517398 GTTCATAGTGCCTACTCACAAAATGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCATTTGA
128 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * *
3517463 GGCATGAACTTAGACTTTACAAAAATTGTTGTGAAGAAAGCCTTCCTTGCGAAACAAAAAGCATC
193 GGCACGAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTCCTTGCGAAAC-CAAAGCATC
* * * * *
3517528 AATATTGTGTATCCTTATGAGAAGAGTATGTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTA
257 AATATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTA
* * * *
3517593 CTATTACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAG
322 GTATAACTATTCATGTATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG
** * * ** * *
3517658 AAAATATTTTCTTGCGACACTAAAGCATCAATGTCAACTATCCTAATGAAGATATTAATATTTTC
387 AAAACCTTTTCTTGTGACACCAAAGCATCAATGTCAACTATCCTAATGAAG---GGAATGTGTTC
* * *
3517723 TTGGTTCCCAGTCTTGAAAAAAATGGA
449 TTGGTTCCCAATCTTGAAAAGAGTGGA
** * * * * * * *
3517750 GACT-ACATCAAGAATCGATGCTTGTCATATTTAAGGGATGTATTTTGACTTTAAGGAAAATAGG
1 GACTGTTAT-GAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAA-GAAAATTGG
* * * *
3517814 GCAAAGAAAAGATTTACATGCTAAAGAAAA-CTATTAATATCTTTTATCCTAATGAGGAGAATGT
64 GCAAAGAAAAGATTTCCATGCTAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGC
* * * * *
3517878 ATTCACAGCGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAA
128 GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* * * *
3517943 GGCACAAACTTAGACTTTACAAAAATTGGTGCAAAGAAAGCCTTCCTTGCTAAACCAGAGCATCA
193 GGCACGAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCA
* * * *
3518008 ACATCATGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCTGAAAAGAATAGGGATTAG
258 ATATCGTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAG
* * *
3518073 TATAACTATTCATGCATGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGA
323 TATAACTATTCATGTATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* * * * *
3518138 AAACCTTTTCCTGTGACAAC-TAGACATCAGTGTCATCTATCCTAATGAAGGGAATGTGTTCTTG
388 AAACCTTTTCTTGTGACACCAAAG-CATCAATGTCAACTATCCTAATGAAGGGAATGTGTTCTTG
3518202 GTTCCCAATCTTGAAAAGAGTGGA
452 GTTCCCAATCTTGAAAAGAGTGGA
* * * *
3518226 GACTGTTATGAGAATCAATGCTTGTCTTTTCTAAAGGAGGAACTTTGATTTTAAGAAAAATTGGG
1 GACTGTTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAG-AAAATTGGG
* * *
3518291 CAAAG-AAAGAATTTCCAGGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGATAATGTG
65 CAAAGAAAAG-ATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCG
* * * *
3518355 TTTATAGTTCTTAATCAAAAAATGAAAGAAGATCATTACTA
129 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
3518396 AAATGAATGG
Statistics
Matches: 3098, Mismatches: 347, Indels: 106
0.87 0.10 0.03
Matches are distributed among these distances:
471 1 0.00
472 436 0.14
473 17 0.01
474 724 0.23
475 105 0.03
476 1287 0.42
477 114 0.04
478 2 0.00
479 165 0.05
480 247 0.08
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (475 bp):
GACTGTTATGAGAATCGATGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTAAGAAAATTGGGC
AAAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCGTT
TATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
ACGAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATA
TCGTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTAT
AACTATTCATGTATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
CCTTTTCTTGTGACACCAAAGCATCAATGTCAACTATCCTAATGAAGGGAATGTGTTCTTGGTTC
CCAATCTTGAAAAGAGTGGA
Found at i:3516561 original size:950 final size:948
Alignment explanation
Indices: 3514431--3518395 Score: 5617
Period size: 950 Copynumber: 4.2 Consensus size: 948
3514421 TGACTGTTGT
* * * *
3514431 GAGAATCGATGCTTGTCTTTTTTAAAGGATGAACCTTGATTTTATA-GAAAATTGGGCATAGAAA
1 GAGAATCGATGCTTGTCATTTTTAAGGGATGAACTTTGATTTTA-AGGAAAATTGGGCAAAGAAA
**
3514495 AGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATACGTTTATAGTG
65 AGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
*
3514560 CCTAATCACAAAATGAATGAAGATCATTACTGGAATCCATGTTTGTCTCATTTGAGGCATGAACT
130 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACT
*
3514625 TAGACTTTACAAAAATTGGTGTGAAGAAAGCCTTCCTTGTGAAACCAAAGCATCAATATCGTGTA
195 TAGACTTTACAAAAATTGGTGTGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTA
3514690 TCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATAACTATT
260 TCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATAACTATT
* * * *
3514755 CTTGTATGTCTTATTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGAAAACCTTTTC
325 CATGTATGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTC
* * *
3514820 TTGTGACACCAAAGCATCAATGTCATC-TATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATC
390 TTCTGACACCAAACCATAAATGTCA-CATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATC
* * * * * *
3514884 TTTAAAAGAGTGGAGACAGTTATGAGAATCGATGCTTGTCTATTTTAA---A-GCACTTTGATTT
454 TTGAAAAGAGTGGAGACTGTTATGAGAATCAACGCTTGTCTTTTTTAAGGGATGAACTTTGATTT
* *
3514945 TAAGGAAAATTGGGCAAAGAAAAGATTTCTAGGCTAAAGAAAATCATCAATATTATTTATCCTAA
519 TAAGGAAAATTGGGCAAAGAAAAGATTTC-ATGCTAAAGAAAATCATCAATATCATTTATCCTAA
* * * *
3515010 TGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGAGTGAAGATCATTATTAGAATCCATGTT
583 TGAGGAGAAT-AGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * * ** *
3515075 TGTCTTATTTGTGGCATGAACTTAGACTTTACAAAAATTGTTGTGAAGAAAGCCTTTCTTGCGAA
647 TATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGCAAAGAAAGCCTTCCTTGCGAA
* * * * * *
3515140 ACAAAAGCATCAATATCGTGTATCCTTATAAGAGGACTATGTTTACGGTGCCTAATCCAGAAAAG
712 ACCAAAGCATCAATATCGTGTATCCTGATGAGAAGACTATATTTACGGTGCCTAATCCTGAAAAG
* * * *
3515205 AATGGGGATTAGTATAATTATTCATGTATGTCTTATTTAAGAGACAAACTCTGATTCTATCAAAA
777 AATGGGGATCAGTATAACTATTCATG-ATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* ** * * * *
3515270 ACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCATCTATCCTAATGAAGGGG
841 ACGGTGGAAAGAAAACATTTTCTTACGACACCAAAGCATCATTGTCAACTATCCTAATGAAGAGA
* * * * * * * *
3515335 ATATGTTCTTGGTTCCCAATCTTTAAAAGAGTGAAGACTGTTA
906 ATGTGTTCTTAGCTCCCAATATTGAAAAGAATGGAGACTGTCA
** * * * *
3515378 TGAGAATTAACGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTATA-GAAAATTTGGCACAGAA
1 -GAGAATCGATGCTTGTCATTTTTAAGGGATGAACTTTGATTTTA-AGGAAAATTGGGCAAAGAA
* **
3515442 AAGATTTCAATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGCATTTATAGT
64 AAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* * *
3515507 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTTTCTCATTTGAGTCACGAAC
129 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAC
* * * *
3515572 TTGGACTTTACAAAAATTGGTGCGAAGAAAGCTTTCCTTGCCG-AACCAAAGCATCACTATCGTG
194 TTAGACTTTACAAAAATTGGTGTGAAGAAAGCCTTCCTTG-CGAAACCAAAGCATCAATATCGTG
*
3515636 TATCCTTATGAGAAGACTATGTTTACGGTGTCTAATCCAGAAAAGAATGGGGATTAGTATAACTA
258 TATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATAACTA
3515701 TTCATGTATGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGG-GGAAAGAAAACCTT
323 TTCATGTATGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAACCTT
3515765 TTCTTCTGACACCAAACCATAAATGTCACATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAA
387 TTCTTCTGACACCAAACCATAAATGTCACATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAA
3515830 TCTTGAAAAGAGTGGAGACTGTTATGAGAATCAACGCTTGTCTTTTTTAAGGGATGAACTTTG-T
452 TCTTGAAAAGAGTGGAGACTGTTATGAGAATCAACGCTTGTCTTTTTTAAGGGATGAACTTTGAT
* * *
3515894 TTTTATGATAAATTGGGTATAA-AAAAGAATTTCATGCTAAAGAAAATCATCAATATCATTTATC
517 TTTAAGGA-AAATTGGGCA-AAGAAAAG-ATTTCATGCTAAAGAAAATCATCAATATCATTTATC
*
3515958 CTAATGAGGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTGGAATCCA
579 CTAATGAGGAGAATA-GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
3516023 TGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGCAAAGAAAGCCTTCCTTG
643 TGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGCAAAGAAAGCCTTCCTTG
* *
3516088 CGAAACCAAAGCATCAATATCGTGTATCCTGATGAGAAGAGTATATTTATGGTGCCTAATCCTGA
708 CGAAACCAAAGCATCAATATCGTGTATCCTGATGAGAAGACTATATTTACGGTGCCTAATCCTGA
* *
3516153 AAAGAATGGGGATCAGTATCACTATTCATG-TGCCTTATTTAAGAGACAAACTTTGATTTTATCA
773 AAAGAATGGGGATCAGTATAACTATTCATGATGCCTTATTTAAGAGACAAACTTTGATTCTATCA
* *
3516217 AAAACGGTGGAAATAAAACATTTTCTTACGACACCAAAGCATCATTGTCAAGTATCCTAATGAAG
838 AAAACGGTGGAAAGAAAACATTTTCTTACGACACCAAAGCATCATTGTCAACTATCCTAATGAAG
*
3516282 AGAATGTGTTCTTAGCTCCCAATATTGAAAAGAATGGAGGCTACGTCA
903 AGAATGTGTTCTTAGCTCCCAATATTGAAAAGAATGGAGACT--GTCA
* * * *
3516330 -AGAATCGATACTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
1 GAGAATCGATGCTTGTCATTTTTAAGGGATGAACTTTGATTTTAAGGAAAATTGGGCAAAGAAAA
* * * *
3516394 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGGATGTGTTCATAGTGC
66 GATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
3516459 CTACTCACAAAATGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCATTTGAGGCATGAACTT
131 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* *
3516524 AGACTTTACAAAAATTGTTGTGAAGAAAGCCTTCCTTGCCG-AACCAAAGCATCACTATCGTGTA
196 AGACTTTACAAAAATTGGTGTGAAGAAAGCCTTCCTTG-CGAAACCAAAGCATCAATATCGTGTA
*
3516588 TCCTTATGAGAAGACTATGTTTACGGTGTCTAATCCAGAAAAGAATGGGGATTAGTATAACTATT
260 TCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATAACTATT
3516653 CATGTATGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGG-GGAAAGAAAACCTTTT
325 CATGTATGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAACCTTTT
3516717 CTTCTGACACCAAACCATAAATGTCACATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATC
389 CTTCTGACACCAAACCATAAATGTCACATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATC
3516782 TTGAAAAGAGTGGAGACTGTTATGAGAATCAACGCTTGTCTTTTTTAAGGGATGAACTTTG-TTT
454 TTGAAAAGAGTGGAGACTGTTATGAGAATCAACGCTTGTCTTTTTTAAGGGATGAACTTTGATTT
* * *
3516846 TTATGATAAATTGGGTATAA-AAAAGAATTTCATGCTAAAGAAAATCATCAATATCATTTATCCT
519 TAAGGA-AAATTGGGCA-AAGAAAAG-ATTTCATGCTAAAGAAAATCATCAATATCATTTATCCT
*
3516910 AATGAGGAGAATACGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTGGAATCCATG
581 AATGAGGAGAATA-GTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
3516975 TTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGCAAAGAAAGCCTTCCTTGCG
645 TTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGCAAAGAAAGCCTTCCTTGCG
* *
3517040 AAACCAAAGCATCAATATCGTGTATCCTGATGAGAAGAGTATATTTATGGTGCCTAATCCTGAAA
710 AAACCAAAGCATCAATATCGTGTATCCTGATGAGAAGACTATATTTACGGTGCCTAATCCTGAAA
* *
3517105 AGAATGGGGATCAGTATCACTATTCATG-TGCCTTATTTAAGAGACAAACTTTGATTTTATCAAA
775 AGAATGGGGATCAGTATAACTATTCATGATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* *
3517169 AACGGTGGAAATAAAACATTTTCTTACGACACCAAAGCATCATTGTCAAGTATCCTAATGAAGAG
840 AACGGTGGAAAGAAAACATTTTCTTACGACACCAAAGCATCATTGTCAACTATCCTAATGAAGAG
*
3517234 AATGTGTTCTTAGCTCCCAATATTGAAAAGAATGGAGGCTACGTCA
905 AATGTGTTCTTAGCTCCCAATATTGAAAAGAATGGAGACT--GTCA
* * * *
3517280 -AGAATCGATACTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
1 GAGAATCGATGCTTGTCATTTTTAAGGGATGAACTTTGATTTTAAGGAAAATTGGGCAAAGAAAA
* * * *
3517344 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGGATGTGTTCATAGTGC
66 GATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* *
3517409 CTACTCACAAAATGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCATTTGAGGCATGAACTT
131 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * *
3517474 AGACTTTACAAAAATTGTTGTGAAGAAAGCCTTCCTTGCGAAACAAAAAGCATCAATATTGTGTA
196 AGACTTTACAAAAATTGGTGTGAAGAAAGCCTTCCTTGCGAAAC-CAAAGCATCAATATCGTGTA
* * * * * *
3517539 TCCTTATGAGAAGAGTATGTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTACTATTACTATT
260 TCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATAACTATT
* * **
3517604 CATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAATATTTTC
325 CATGTATGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTC
* * * ** * *
3517669 TTGC-GACACTAAAGCATCAATGTCA-ACTATCCTAATGAAGATATTAATATTTTCTTGGTTCCC
390 TT-CTGACACCAAACCATAAATGTCACA-TATCCTAATGAAG---GGAATGTGTTCTTGGTTCCC
* * * ** * * * * * * *
3517732 AGTCTTGAAAAAAATGGAGACT-ACATCAAGAATCGATGCTTGTCATATTTAAGGGATGTATTTT
450 AATCTTGAAAAGAGTGGAGACTGTTAT-GAGAATCAACGCTTGTCTTTTTTAAGGGATGAACTTT
* * * *
3517796 GACTTTAAGGAAAATAGGGCAAAGAAAAGATTTACATGCTAAAGAAAA-CTATTAATATCTTTTA
514 GATTTTAAGGAAAATTGGGCAAAGAAAAGATTT-CATGCTAAAGAAAATC-ATCAATATCATTTA
* *
3517860 TCCTAATGAGGAGAAT-GTATTCACAGCGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
577 TCCTAATGAGGAGAATAGT-TT-ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
* * *
3517924 CCATGTTTGTCTCATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGCAAAGAAAGCCTTCC
640 CCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGCAAAGAAAGCCTTCC
* * * * * *
3517989 TTGCTAAACCAGAGCATCAACATCATGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCC
705 TTGCGAAACCAAAGCATCAATATCGTGTATCCTGATGAGAAGACTATATTTACGGTGCCTAATCC
* * *
3518054 TGAAAAGAATAGGGATTAGTATAACTATTCATGCATGTCTTATTTAAGAGACAAACTTTGATTCT
770 TGAAAAGAATGGGGATCAGTATAACTATTCATG-ATGCCTTATTTAAGAGACAAACTTTGATTCT
* * * ** * * * *
3518119 ATCAAAAATGGTGGAAAGAAAACCTTTTCCTGTGACAAC-TAGACATCAGTGTCATCTATCCTAA
834 ATCAAAAACGGTGGAAAGAAAACATTTTCTTACGACACCAAAG-CATCATTGTCAACTATCCTAA
* * * * * *
3518183 TGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTA
898 TGAAGAGAATGTGTTCTTAGCTCCCAATATTGAAAAGAATGGAGACTGTCA
* * * *
3518234 TGAGAATCAATGCTTGTC-TTTTCTAAAGGAGGAACTTTGATTTTAAGAAAAATTGGGCAAAG-A
1 -GAGAATCGATGCTTGTCATTTT-TAAGGGATGAACTTTGATTTTAAGGAAAATTGGGCAAAGAA
* *
3518297 AAGAATTTCCAGGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGATAATGTGTTTATAG
64 AAG-ATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * *
3518362 TTCTTAATCAAAAAATGAAAGAAGATCATTACTA
128 TGCCTAATCACAAAATGAATGAAGATCATTACTA
3518396 AAATGAATGG
Statistics
Matches: 2776, Mismatches: 205, Indels: 64
0.91 0.07 0.02
Matches are distributed among these distances:
947 1 0.00
948 462 0.17
949 6 0.00
950 1282 0.46
951 174 0.06
952 255 0.09
953 18 0.01
954 312 0.11
955 15 0.01
956 251 0.09
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (948 bp):
GAGAATCGATGCTTGTCATTTTTAAGGGATGAACTTTGATTTTAAGGAAAATTGGGCAAAGAAAA
GATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
AGACTTTACAAAAATTGGTGTGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTAT
CCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATAACTATTC
ATGTATGGCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCT
TCTGACACCAAACCATAAATGTCACATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTT
GAAAAGAGTGGAGACTGTTATGAGAATCAACGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTA
AGGAAAATTGGGCAAAGAAAAGATTTCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGA
GGAGAATAGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATC
TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGCAAAGAAAGCCTTCCTTGCGAAACCA
AAGCATCAATATCGTGTATCCTGATGAGAAGACTATATTTACGGTGCCTAATCCTGAAAAGAATG
GGGATCAGTATAACTATTCATGATGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGT
GGAAAGAAAACATTTTCTTACGACACCAAAGCATCATTGTCAACTATCCTAATGAAGAGAATGTG
TTCTTAGCTCCCAATATTGAAAAGAATGGAGACTGTCA
Found at i:3518444 original size:181 final size:181
Alignment explanation
Indices: 3518222--3518561 Score: 574
Period size: 181 Copynumber: 1.9 Consensus size: 181
3518212 TTGAAAAGAG
3518222 TGGAGACTGTTATGAGAATCAATGCTTGTCTTTTCTAAAGGAGGAACTTTGATTTTAAGAAAAAT
1 TGGAGACTGTTATGAGAATCAATGCTTGTCTTTTCTAAAGGAGGAACTTTGATTTTAAGAAAAAT
** *
3518287 TGGGCAAAGAAAGAATTTCCAGGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGATAAT
66 TGGGCAAAGAAAGAATTTCCAAACTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* *
3518352 GTGTTTATAGT-TCTTAATCAAAAAATGAAAGAAGATCATTACTAAAATGAA
131 GTGTTTACAGTGCCTT-ATCAAAAAATGAAAGAAGATCATTACTAAAATGAA
* * *
3518403 TGGAGACTGTTATGAGAATCGATGCTTGTCTTTTTTAAAGGAGGAACTTTGATTTTAAGGAAAAT
1 TGGAGACTGTTATGAGAATCAATGCTTGTCTTTTCTAAAGGAGGAACTTTGATTTTAAGAAAAAT
*
3518468 TGGGCAAAGAAAGGATTTCCAAACTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
66 TGGGCAAAGAAAGAATTTCCAAACTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
*
3518533 GTGTTTACAGTGCCTTATCACAAAATGAA
131 GTGTTTACAGTGCCTTATCAAAAAATGAA
3518562 TGAATACTAT
Statistics
Matches: 148, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
181 145 0.98
182 3 0.02
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (181 bp):
TGGAGACTGTTATGAGAATCAATGCTTGTCTTTTCTAAAGGAGGAACTTTGATTTTAAGAAAAAT
TGGGCAAAGAAAGAATTTCCAAACTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
GTGTTTACAGTGCCTTATCAAAAAATGAAAGAAGATCATTACTAAAATGAA
Found at i:3518782 original size:18 final size:18
Alignment explanation
Indices: 3518759--3518794 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
3518749 CTTATTTAAG
3518759 GGACAAACTTTGATTCTA
1 GGACAAACTTTGATTCTA
3518777 GGACAAACTTTGATTCTA
1 GGACAAACTTTGATTCTA
3518795 TTAAAAACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (18 bp):
GGACAAACTTTGATTCTA
Found at i:3519639 original size:452 final size:452
Alignment explanation
Indices: 3518795--3519665 Score: 1160
Period size: 452 Copynumber: 1.9 Consensus size: 452
3518785 TTTGATTCTA
* * *
3518795 TTAAAAACAGTGGAAAGAAAACCTTTCCTTGTGACACCAAAGCATCATTGTCATATATCCTAATG
1 TTAAAAAAAGTGGAAAGAAAACCTTTCCTTGCGACACCAAAGCATCAATGTCATATATCCTAATG
* * * * * * * *
3518860 GAGGGGATGTGTTCTTGGTTTCCAAGCTTAAAAAGAGTCGAGACTGTTATGAGAATCGTAGCTTT
66 AAGAGAATGTGTTCTTAGTTTCCAAGCTCAAAAAGAGTCGAGACTATTACGAGAAGCGTAGCTTT
* *
3518925 CCTTTTTTAACGGAGGAACTTTGATTTTAAGGAAAGTTGGGCAAAGAAAAGATTTCCAGGCTAAA
131 CCTTTTTTAACGGAGGAACTTTGATTTTAAGGAAAGTCGGGCAAAGAAAAGATTTCCAAGCTAAA
* * * *
3518990 GAAAATTATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCATAAAATGA
196 GAAAATCATCAATATAATTTATCCTAATGAGGACAATGTGTTTATAGTGCCTAACCACAAAATGA
* * * *
3519055 ACGAAGATCATACAAGAATCCATGTTTGTCTCATTTGAGGCACAAATTTACTCTTTTCAAAAATT
261 AAGAAGATCATACAAGAATCCATGTTTGTCTCATTTGAGGCACAAAGTTACACTTTACAAAAATT
* * * * *
3519120 GGTGGGAGGAAAGCGTTCCTTGCAAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTA
326 GGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGCACCCTTATGAGAAGACTA
* * *
3519185 TGTTTATGGTGCCTAATCTTGAATAGAATGGGGATTAATATGACTATTCATGTTTGTCTTAT
391 TGTTTATGGAGCCTAATCCTGAAAAGAATGGGGATTAATATGACTATTCATGTTTGTCTTAT
* * * * *
3519247 TTAAAAAAAGTGGAAAGAAAGCCTTTTCTTGCGACACTAAAGCATTAATGTCATCTATCCTAATG
1 TTAAAAAAAGTGGAAAGAAAACCTTTCCTTGCGACACCAAAGCATCAATGTCATATATCCTAATG
* * * *
3519312 AAGAGAATGTGTTC-TAG-TTCCTAATCTCGAAAAGGGTGGAGACTATTACGAGAAGCG-ATGCT
66 AAGAGAATGTGTTCTTAGTTTCC-AAGCTCAAAAAGAGTCGAGACTATTACGAGAAGCGTA-GCT
** * *
3519374 TGT-CTTTTTTAGGGGAGGGACTTTTATTTTAAGGAGAA-TCGGGCAAAGAAAAGATTTCCAAGC
129 T-TCCTTTTTTAACGGAGGAACTTTGATTTTAAGGA-AAGTCGGGCAAAGAAAAGATTTCCAAGC
* * *
3519437 TAAAGAAAATCATCAATATAATTTATCCTAATGAGGACAATGTGTTTATAGTTCTTAATCACAAA
192 TAAAGAAAATCATCAATATAATTTATCCTAATGAGGACAATGTGTTTATAGTGCCTAACCACAAA
* * * * *
3519502 TTGAAAGAAGATTATTACTAGAATCCATGTTTGTCT-AGTTTGAGGCACGAAGTTAGACTTTACA
257 ATGAAAGAAGATCA-TACAAGAATCCATGTTTGTCTCA-TTTGAGGCACAAAGTTACACTTTACA
* **
3519566 AAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGGTGCACCCTTATGAGA
320 AAAATTGGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGCACCCTTATGAGA
*
3519631 AGACTATGTTTATGGAGGCTAATCCTGAAAAGAAT
385 AGACTATGTTTATGGAGCCTAATCCTGAAAAGAAT
3519666 CCGTGGTTAT
Statistics
Matches: 359, Mismatches: 54, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
450 5 0.01
451 154 0.43
452 200 0.56
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (452 bp):
TTAAAAAAAGTGGAAAGAAAACCTTTCCTTGCGACACCAAAGCATCAATGTCATATATCCTAATG
AAGAGAATGTGTTCTTAGTTTCCAAGCTCAAAAAGAGTCGAGACTATTACGAGAAGCGTAGCTTT
CCTTTTTTAACGGAGGAACTTTGATTTTAAGGAAAGTCGGGCAAAGAAAAGATTTCCAAGCTAAA
GAAAATCATCAATATAATTTATCCTAATGAGGACAATGTGTTTATAGTGCCTAACCACAAAATGA
AAGAAGATCATACAAGAATCCATGTTTGTCTCATTTGAGGCACAAAGTTACACTTTACAAAAATT
GGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGCACCCTTATGAGAAGACTA
TGTTTATGGAGCCTAATCCTGAAAAGAATGGGGATTAATATGACTATTCATGTTTGTCTTAT
Found at i:3520619 original size:476 final size:475
Alignment explanation
Indices: 3519712--3521353 Score: 2116
Period size: 476 Copynumber: 3.5 Consensus size: 475
3519702 ACCAAAGCAC
* ** * *
3519712 CAATATCATTTATCCTAATGAGGAGAATGCATTTATAGTGCCTAACCATAAAATGAATGAAGATC
1 CAATATCATTTATCCTAATGAGGACAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGATC
* * * * ** * *
3519777 ATTAGTAGAATCCATGTTTGCCTCATTTGAGCCATGAACTTACTTTTTTCTAAAATTGGTGGGAA
66 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTGGGAA
* * * *
3519842 GAAAGACTTGCTTGCAAAACCAAAGCATCGATATCATGTATCCTTATGAGAAGACTATGTTTATG
131 GAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGTTTATG
* * * *
3519907 GTGCCTAATCTTGAATATAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
196 GAGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
* * *
3519972 ACTTTGATTCTATCGAAAACGATGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCA
261 ACTTTGATTCTATCAAAAAAG-TGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATTAATGTCA
* * *
3520037 TCTATCATAATGAAGGGAATGTG-TTCTAGGTTCCTAATCTTGAAAAGAGTGGAGACTGTTACGA
325 TCTATCCTAATGAAGGGAATGTGTTTTTA-GTTCCTAATCTTGAAAAGAGTGGAGACTGATACGA
* *
3520101 GAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTAATTTTAAGGAAAATTAGGCAAAGAAAAGA
389 GAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA
3520166 TTTCCAAGCTAAAGAAAATCAT
454 TTTCCAAGCTAAAGAAAATCAT
* * * *
3520188 CAATATCATTTATCCTAATGAGGACAATGTGTTTATAGTTCTTAATCACAAAATGAAAAAAGATC
1 CAATATCATTTATCCTAATGAGGACAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGATC
* * ** * *
3520253 ATTACTAAAATCCAAGTTTGTCTTGTTTGAGGCACGGACTTAGACTTTACAAAAATTGGTGGGAA
66 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTGGGAA
* * * ** *
3520318 CAAAGCCTTTCTTGCGAAACTAAAGCATCAATATGGTGCATCCTTATGACAAGACTATGTTTATG
131 GAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGTTTATG
* * * * *
3520383 GAGGCTAATCCTGAAAAGAGTAGGGATTAGTATGACAATTCATGTTCGTCTAATTTAAGAGACAA
196 GAGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
* *
3520448 ACTTTGATTCTATCAAAAATAGCGGAAAGAAAATCTTTTCTTGTGACACCAAAGCATTAATGTCA
261 ACTTTGATTCTATCAAAAA-AGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATTAATGTCA
* * * * * *
3520513 TGTATCCTAATGAAGGGAATGTGTTTTTCGCTCCCAATCTT-AAAATGAATGGAGACTGCAT-CA
325 TCTATCCTAATGAAGGGAATGTGTTTTTAGTTCCTAATCTTGAAAA-GAGTGGAGACTG-ATACG
* * *
3520576 AGAATCGATGCTTGTCATTTTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAT
388 AGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA-
* *
3520641 GCTTT-CATA-CAAAAGAAAATCAT
452 GATTTCCA-AGCTAAAGAAAATCAT
* * * *
3520664 CAATATCATTTATCCTAATGAGGAGAATTTGTTTATAGTGCCTAACCATAAAATGAATGAAGATC
1 CAATATCATTTATCCTAATGAGGACAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGATC
* ** * * *
3520729 ATTACTAGAATCCTTGTTTGTCTCATTTGAGGCACTCATTTACTCTTTTCAAAAATTGGTGGGAA
66 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTGGGAA
* * *
3520794 GAAAGCCTTCCTTGCAAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAGACTATGTTTATG
131 GAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGTTTATG
* * * * *
3520859 GTGCCTAATCCTGAAAAGAAT-GAGGATTA-TATGACTATTAATTTTTATCTTATTTAAGAAACA
196 GAGCCTAATCCTGAAAAGAATAG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
* * * *
3520922 AATTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACTAAAGCATTAATGTC
260 AACTTTGATTCTATCAAAAA-AGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATTAATGTC
* * *
3520987 ATCTATCCTAATGAAGAGAATGTG-TTCTAGTTCCTAATCTTGAAAAGGGTGGAGACT-ATTACG
324 ATCTATCCTAATGAAGGGAATGTGTTTTTAGTTCCTAATCTTGAAAAGAGTGGAGACTGA-TACG
* * * * * * **
3521050 AGAAGCAATGCTTGTCTTTTTTAGGGGAGGGACTTTGATTTTATGGAGAATCGGGCAAAGAAAAG
388 AGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
3521115 ATTTCCAAGCTAAAGAAAATCAT
453 ATTTCCAAGCTAAAGAAAATCAT
* * * * * * *
3521138 CAATATAATGTATCCTAATGAGGACAATGTGTTTATAGTTCTTAATCACAAATTGAAAGAAGATT
1 CAATATCATTTATCCTAATGAGGACAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGATC
*
3521203 ATTACTAGAATCCATGTTTGTCT-AGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGA
66 ATTACTAGAATCCATGTTTGTCTCA-TTTGAGGCACGAACTTACACTTTACAAAAATTGGTGGGA
* * ** *
3521267 AGAAAGCTTTTTTTGCAAAACCAAAGCATCAATATGGTGCACCCTTATGAGAAGACTATGTTTAT
130 AGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGTTTAT
* *
3521332 GGAGGCTAATCCTAAAAAGAAT
195 GGAGCCTAATCCTGAAAAGAAT
3521354 TCGTGGTTAT
Statistics
Matches: 994, Mismatches: 159, Indels: 28
0.84 0.13 0.02
Matches are distributed among these distances:
472 1 0.00
473 7 0.01
474 276 0.28
475 116 0.12
476 584 0.59
477 10 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
CAATATCATTTATCCTAATGAGGACAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAGATC
ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTGGGAA
GAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGTTTATG
GAGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
ACTTTGATTCTATCAAAAAAGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATTAATGTCAT
CTATCCTAATGAAGGGAATGTGTTTTTAGTTCCTAATCTTGAAAAGAGTGGAGACTGATACGAGA
ATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATT
TCCAAGCTAAAGAAAATCAT
Found at i:3521452 original size:104 final size:104
Alignment explanation
Indices: 3521259--3521457 Score: 220
Period size: 104 Copynumber: 1.9 Consensus size: 104
3521249 TTACAAAAAT
* ** ** * *
3521259 TGGTGGGAAGAAAGCTTTTTTTGCAAAACCAAAGCATCAATATGGTGCACCCTTATGAGAAGACT
1 TGGTGGGAAGAAAGCCTTACTTGCAAAACCAAAGCATCAATATCATGCACCCTAATGAGAAGAAT
* *
3521324 ATGTTTATGGAGGCTAATCCTAAAAAGAATTCGTGGTTA
66 ATGTTTATAGAGCCTAATCCTAAAAAGAATTCGTGGTTA
* * ** * *
3521363 TGGTGGGAAGAAAGCCTTACTTGCGAAAGCAAAGCATCAATATCATTTATCCTAATGAGGAGAAT
1 TGGTGGGAAGAAAGCCTTACTTGCAAAACCAAAGCATCAATATCATGCACCCTAATGAGAAGAAT
* * *
3521428 GTGTTTATAGTGCCTAA-CCATAAAATGAAT
66 ATGTTTATAGAGCCTAATCC-TAAAAAGAAT
3521458 GAAGATCATT
Statistics
Matches: 76, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
103 2 0.03
104 74 0.97
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (104 bp):
TGGTGGGAAGAAAGCCTTACTTGCAAAACCAAAGCATCAATATCATGCACCCTAATGAGAAGAAT
ATGTTTATAGAGCCTAATCCTAAAAAGAATTCGTGGTTA
Found at i:3522076 original size:738 final size:736
Alignment explanation
Indices: 3520652--3522089 Score: 2279
Period size: 738 Copynumber: 2.0 Consensus size: 736
3520642 CTTTCATACA
* *
3520652 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATTTGTTTATAGTGCCTAACCATAAAA
1 AAAGAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCATAAAA
* * * * *
3520717 TGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGCACTCATTTACTCTTTTCAAA
66 TGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGCCACTAACTTACTCTTTTCAAA
* *
3520782 AATTGGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCGTCAATATCATGTATCCTTATGAGAAG
131 AATTGGTGGGAAGAAAGACTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAG
*
3520847 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTATATGACTATTAATTTTTATCTTAT
196 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTATATGACTATTAATGTTTATCTTAT
* *
3520912 TTAAGAAACAAATTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACTAAAG
261 TTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAG
* * * *
3520977 CATTAATGTCATCTATCCTAATGAAGAGAATGTGTTCTAGTTCCTAATCTTGAAAAGGGTGGAGA
326 CATCAATGTCATCTATCATAATGAAGAGAATGTGTTCAAGTTCCTAATCTTGAAAAGAGTGGAGA
* * * * * *
3521042 CTATTACGAGAAGCAATGCTTGTCTTTTTTAGGGGAGGGACTTTGATTTTATGGAGAATCGGGCA
391 CTATTACGAGAAGCAATGCTTGTCTTTTTTAAGGGAGGAACTTTAATTTTAAGGAAAATCAGGCA
3521107 AAGAAAAGATTTCCAAGCTAAAGAAAATCATCAATATAATGTATCCTAATGAGGACAATGTGTTT
456 AAGAAAAGATTTCCAAGCTAAAGAAAATCATCAATATAATGTATCCTAATGAGGACAATGTGTTT
* * * *
3521172 ATAGTTCTTAATCACAAATTGAAAGAAGATTATTACTAGAATCCATGTTTGTCTAGTTTGAGGCA
521 ATAGTTCTTAATCACAAAATGAAAGAAGATCATTACTAAAATCCAAGTTTGTCTAGTTTGAGGCA
* * *
3521237 CGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCTTTTTTTGCAAAACCAAAGCATCAATAT
586 CGAACTTAGACTTTACAAAAATTGGTGGGAACAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT
*
3521302 GGTGCACCCTTATGAGAAGACTATGTTTATGGAGGCTAATCCTAAAAAGAATTCGTGGTTATGGT
651 GGTGCACCCTTATGACAAGACTATGTTTATGGAGGCTAATCCTAAAAAGAATTCGTGGTTATGGT
3521367 GGGAAGAAAGCCTTACTTGCG
716 GGGAAGAAAGCCTTACTTGCG
*
3521388 AAAGCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCATAAAA
1 AAAGAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCATAAAA
* * *
3521453 TGAATGAAGATCATTAGTAGAATCCATGTTTGCCTCATTTGAGCCA-TGAACTTACTTTTTTCTA
66 TGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGCCACT-AACTTACTCTTTTCAA
* *
3521517 AAATTGGTGGGAAGAAAGACTTGCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA
130 AAATTGGTGGGAAGAAAGACTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAA
* * * * *
3521582 GACTATGTTTATGTTGCCTAATCTTGAATATAAT-AGGGATTAGTATGACTATTCATGTTTATCT
195 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGA-GGATTA-TATGACTATTAATGTTTATCT
* *
3521646 TATTTAAGAGACAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCA
258 TATTTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCA
* *
3521711 AAGCATCAATGTCCTCTATCATAATGAAGGGAATGTGTTCAAGGTTCCTAATCTTGAAAAGAGTG
323 AAGCATCAATGTCATCTATCATAATGAAGAGAATGTGTTCAA-GTTCCTAATCTTGAAAAGAGTG
* * * *
3521776 GAGACTATTACGAGAATCGATGCTTGTCTTTTTTAAGGGAGGAATTTTAATTTTAAGGAAAATTA
387 GAGACTATTACGAGAAGCAATGCTTGTCTTTTTTAAGGGAGGAACTTTAATTTTAAGGAAAATCA
* * * *
3521841 GGCAAAGAAAAGATTTCCAAGTTAAAGAAAATCATCAATATCATTTATCCTAATGAGGATAATGT
452 GGCAAAGAAAAGATTTCCAAGCTAAAGAAAATCATCAATATAATGTATCCTAATGAGGACAATGT
3521906 GTTTATAGTTCTTAATCACAAAATGAAAGAAGATCATTACTAAAATCCAAGTTTGTCTTA-TTTG
517 GTTTATAGTTCTTAATCACAAAATGAAAGAAGATCATTACTAAAATCCAAGTTTGTC-TAGTTTG
* ** *
3521970 AGGCACGAACTTGGACTTTACAAAAATTGGTGGGAACAAAGCCTTTCTTGGGAAACTAAAGCATC
581 AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAACAAAGCCTTTCTTGCAAAACCAAAGCATC
* *
3522035 AATATGGTGCATCCTTATGACAAGACTATGTTTATGGAGGCTAATCCTGAAAAGA
646 AATATGGTGCACCCTTATGACAAGACTATGTTTATGGAGGCTAATCCTAAAAAGA
3522090 GTAGGGATTA
Statistics
Matches: 638, Mismatches: 59, Indels: 8
0.90 0.08 0.01
Matches are distributed among these distances:
735 2 0.00
736 213 0.33
737 117 0.18
738 304 0.48
739 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (736 bp):
AAAGAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCATAAAA
TGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGCCACTAACTTACTCTTTTCAAA
AATTGGTGGGAAGAAAGACTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAG
ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTATATGACTATTAATGTTTATCTTAT
TTAAGAAACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAG
CATCAATGTCATCTATCATAATGAAGAGAATGTGTTCAAGTTCCTAATCTTGAAAAGAGTGGAGA
CTATTACGAGAAGCAATGCTTGTCTTTTTTAAGGGAGGAACTTTAATTTTAAGGAAAATCAGGCA
AAGAAAAGATTTCCAAGCTAAAGAAAATCATCAATATAATGTATCCTAATGAGGACAATGTGTTT
ATAGTTCTTAATCACAAAATGAAAGAAGATCATTACTAAAATCCAAGTTTGTCTAGTTTGAGGCA
CGAACTTAGACTTTACAAAAATTGGTGGGAACAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT
GGTGCACCCTTATGACAAGACTATGTTTATGGAGGCTAATCCTAAAAAGAATTCGTGGTTATGGT
GGGAAGAAAGCCTTACTTGCG
Found at i:3522289 original size:476 final size:475
Alignment explanation
Indices: 3521388--3523043 Score: 2103
Period size: 476 Copynumber: 3.5 Consensus size: 475
3521378 CTTACTTGCG
* * *
3521388 AAAGCAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCATAAAA
1 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAA
* * * * * *** * *
3521453 TGAATGAAGATCATTAGTAGAATCCATGTTTGCCTCATTTGAGCCATGAACTTACTTTTTTCTAA
66 TGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * *
3521518 AATTGGTGGGAAGAAAGACTTGCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
131 AATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAG
** * * * *
3521583 ACTATGTTTATGTTGCCTAATCTTGAATATAATAGGGATTAGTATGACTATTCATGTTTATCTTA
196 ACTATGTTTATGGAGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTA
*
3521648 TTTAAGAGACAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAA
261 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAA
* * * * * *** *
3521713 GCATCAATGTCCTCTATCATAATGAAGGGAATGTGTTCAAGGTTC-CTAATCTTGAAAAGAGTGG
326 GCATTAATGTCATGTATCCTAATGAAGGGAATGTTTTTTTGGCTCTC-AATCTTGAAAAGAGTGG
*
3521777 AGACTATTACGAGAATCGATGCTTGTCTTTTTTAAGGGAGGAATTTTAATTTTAAGGAAAATTAG
390 AGACTATTACGAGAATCGATGCTTGTC-TTTTTAAGGGAGGAATTTTGATTTTAAGGAAAATTAG
*
3521842 GCAAAGAAAAGATTTCCAAGTT
454 GCAAAGAAAAGATTTCCAAGCT
* * * *
3521864 AAAGAAAATCATCAATATCATTTATCCTAATGAGGATAATGTGTTTATAGTTCTTAATCACAAAA
1 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAA
* * * *
3521929 TGAAAGAAGATCATTACTAAAATCCAAGTTTGTCTTATTTGAGGCACGAACTTGGACTTTACAAA
66 TGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* ** * * *
3521994 AATTGGTGGGAACAAAGCCTTTCTTGGGAAACTAAAGCATCAATATGGTGCATCCTTATGACAAG
131 AATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAG
* * * *
3522059 ACTATGTTTATGGAGGCTAATCCTGAAAAGAGTAGGGATTAGTATGACAATTCATGTTTGTCTAA
196 ACTATGTTTATGGAGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTA
* * *
3522124 TTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAATCTTTTCTTGTGACACCAAA
261 TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAA
* *
3522189 GCATTAATGTCATGTATCCTAATGAAGGGAATGTTTTTTTGGCTCTCAATCTTAAAAAGAATGGA
326 GCATTAATGTCATGTATCCTAATGAAGGGAATGTTTTTTTGGCTCTCAATCTTGAAAAGAGTGGA
* * *
3522254 GACTGCA-T-CAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA-TA
391 GACT--ATTACGAGAATCGATGCTTGTC-TTTTTAAGGGAGGAATTTTGATTTTAAGGAAAATTA
* *
3522316 GGGCAAAGAAAATG-TTTCCATGCA
453 -GGCAAAGAAAA-GATTTCCAAGCT
* * *
3522340 AAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAATTTGTTTATAGTGCCTAACCATAAAA
1 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAA
* * ** * ** *
3522405 TGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGCACTCATTTACTCTTTTCAAA
66 TGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * * *
3522470 AATTGGTGGGAAGAAAGCCTTCCTTGCAAAACTAAAGCATCAATATCATGTATCCTTATGAGAAG
131 AATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAG
* * * * **
3522535 ACTATGTTTATGCTA-CCTAATCCTGAAAAGAATGGGGATTAATATGACTACTCATGTAGGTCTT
196 ACTATGTTTATG-GAGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTT
* * *
3522599 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAACCTTTTCTTGCGAGACTAA
260 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAA
* **
3522664 AGCATTAATCTCATGTATCCTAATGAAGGGAATGTGTTCTAATTT--C-CT-AATCTTGAAAACT
325 AGCATTAATGTCATGTATCCTAATGAAGGGAATGT-TT-T--TTTGGCTCTCAATCTTGAAAAGA
* * * * *
3522725 GTGGAGACTATTACGAGAAGT-GATGCTTATCTTTTTTAGGAGAGGGACTTTGATTTTAAGGAGA
386 GTGGAGACTATTACGAGAA-TCGATGCTTGTCTTTTTAAGG-GAGGAATTTTGATTTTAAGGAAA
* *
3522789 ATCAGGCAAAGAAAAGATTTCCACGCT
449 ATTAGGCAAAGAAAAGATTTCCAAGCT
* * * * * * *
3522816 AAAGAAAATCATCAATATAATTTATCCTAATAAGGACAATGTGTTTATAGTTCATAATCACAAAT
1 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAA
*
3522881 TGAAAGAAGATTATTACTAGAATCCATGTTTGTCT-AGTTTGAGGCACGAACTTAGACTTTACAA
66 TGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTTGAGGCACGAACTTAGACTTTACAA
* * *
3522945 AAATTGGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCATCAATATGGTGCATCCTTACGAGAA
130 AAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGCATCCTTATGAGAA
* * *
3523010 AACTATGTTTATGGAGGCTAATCCTGAAAGGAAT
195 GACTATGTTTATGGAGCCTAATCCTGAAAAGAAT
3523044 CCGTGGTTAT
Statistics
Matches: 1010, Mismatches: 152, Indels: 36
0.84 0.13 0.03
Matches are distributed among these distances:
474 1 0.00
475 13 0.01
476 980 0.97
477 10 0.01
478 3 0.00
480 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAA
TGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
AATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAG
ACTATGTTTATGGAGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTA
TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAA
GCATTAATGTCATGTATCCTAATGAAGGGAATGTTTTTTTGGCTCTCAATCTTGAAAAGAGTGGA
GACTATTACGAGAATCGATGCTTGTCTTTTTAAGGGAGGAATTTTGATTTTAAGGAAAATTAGGC
AAAGAAAAGATTTCCAAGCT
Found at i:3523766 original size:738 final size:738
Alignment explanation
Indices: 3522349--3523781 Score: 2287
Period size: 738 Copynumber: 1.9 Consensus size: 738
3522339 AAAAGAAAAT
* **
3522349 CATCAATATCATTTATCCTAATGAGGGGAATTTGTTTATAGTGCCTAACCATAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAACCATAAAATGAATGAAG
* ** *
3522414 ATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGCACTCATTTACTCTTTTCAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTTCAAAAATTGGTGG
*
3522479 GAAGAAAGCCTTCCTTGCAAAACTAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
131 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
** *
3522544 ATGCTACCTAATCCTGAAAAGAATGGGGATTAATATGACTACTCATGTAGGTCTTATTTAAGAGA
196 ATGCTACCTAATCCTGAAAAGAACAGGGATTAATATGACTACTCATGTAGATCTTATTTAAGAGA
* * * * *
3522609 CAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAACCTTTTCTTGCGAGACTAAAGCATTAATC
261 CAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATC
* * * *
3522674 TCATGTATCCTAATGAAGGGAATGTGTTCTAATTTCCTAATCTTGAAAACTGTGGAGACTATTAC
326 TCATCTATCCTAATGAAGGGAATGTGTTCTAAGTTCCTAATCTTGAAAACAGTGAAGACTATTAC
* * *
3522739 GAGAAGTGATGCTTATCTTTTTTAGGAGAGGGACTTTGATTTTAAGGAGAATCAGGCAAAGAAAA
391 AAGAAGTGATGCTTATCTTTTTTAGGAGAGGAACTTTGATTTTAAGGAAAATCAGGCAAAGAAAA
* *
3522804 GATTTCCACGCTAAAGAAAATCATCAATATAATTTATCCTAATAAGGACAATGTGTTTATAGTTC
456 GATTTCCAAGCTAAAAAAAATCATCAATATAATTTATCCTAATAAGGACAATGTGTTTATAGTTC
* *
3522869 ATAATCACAAATTGAAAGAAGATTATTACTAGAATCCATGTTTGTCTAGTTTGAGGCACGAACTT
521 ATAATCACAAAATGAAAGAAGATTATTACTAGAATCCATGTTTGTCTAGTTTGAGACACGAACTT
3522934 AGACTTTACAAAAATTGGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCATCAATATGGTGCAT
586 AGACTTTACAAAAATTGGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCATCAATATGGTGCAT
* * * *
3522999 CCTTACGAGAAAACTATGTTTATGGAGGCTAATCCTGAAAGGAATCCGTGGTTATGGTGGGAAGA
651 CATTACGACAAAACTATGTTTATGGAGGCTAATCCTAAAAAGAATCCGTGGTTATGGTGGGAAGA
3523064 AAGCCTTACTTGTGAAACCAAAG
716 AAGCCTTACTTGTGAAACCAAAG
3523087 CATCAATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAACCATAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAACCATAAAATGAATGAAG
* *
3523152 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTTTTTTCTAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTTCAAAAATTGGTGG
3523217 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
131 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
* ** * * * ** *
3523282 ATGGTACCTAATTTTGAATATAACAGGGATTAATATGACTATTCATGTTTATCTTATTTAAGTGA
196 ATGCTACCTAATCCTGAAAAGAACAGGGATTAATATGACTACTCATGTAGATCTTATTTAAGAGA
* *
3523347 CAAACTTTGATTCTATCGAAAACAGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATT
261 CAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATC
* *
3523412 TCATCTATCCTAATGAAGGGAATGTGTTC-AAGGTTCCTAATCTTGAAAAGAGTGAAGACTGTTA
326 TCATCTATCCTAATGAAGGGAATGTGTTCTAA-GTTCCTAATCTTGAAAACAGTGAAGACTATTA
* * *
3523476 CAAGAA-TCGATGCTTGTCTTTTTTATGG-GAGGAACTTTGATTTTAAGGAAAATTAGGCAGAGA
390 CAAGAAGT-GATGCTTATCTTTTTTA-GGAGAGGAACTTTGATTTTAAGGAAAATCAGGCAAAGA
* * *
3523539 AAAGATTTCCAAGCTAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
453 AAAGATTTCCAAGCTAAAAAAAATCATCAATATAATTTATCCTAATAAGGACAATGTGTTTATAG
* * *
3523604 TTCTTAATCACAAAATGAAAGAAGATTATTACTAGAATCTATGTTTGTCTTGTTTGAGACACGAA
518 TTCATAATCACAAAATGAAAGAAGATTATTACTAGAATCCATGTTTGTCTAGTTTGAGACACGAA
**
3523669 CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCATTCTTGGGAAACCAAAGCATCAATATGGTG
583 CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCATCAATATGGTG
* *
3523734 CATCATTATGACAAGACTATGTTTATGGAGGCTAATCCTAAAAAGAAT
648 CATCATTACGACAAAACTATGTTTATGGAGGCTAATCCTAAAAAGAAT
3523782 AGGGATTAGT
Statistics
Matches: 633, Mismatches: 59, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
737 3 0.00
738 628 0.99
739 2 0.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.31
Consensus pattern (738 bp):
CATCAATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAACCATAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTTCAAAAATTGGTGG
GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
ATGCTACCTAATCCTGAAAAGAACAGGGATTAATATGACTACTCATGTAGATCTTATTTAAGAGA
CAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATC
TCATCTATCCTAATGAAGGGAATGTGTTCTAAGTTCCTAATCTTGAAAACAGTGAAGACTATTAC
AAGAAGTGATGCTTATCTTTTTTAGGAGAGGAACTTTGATTTTAAGGAAAATCAGGCAAAGAAAA
GATTTCCAAGCTAAAAAAAATCATCAATATAATTTATCCTAATAAGGACAATGTGTTTATAGTTC
ATAATCACAAAATGAAAGAAGATTATTACTAGAATCCATGTTTGTCTAGTTTGAGACACGAACTT
AGACTTTACAAAAATTGGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCATCAATATGGTGCAT
CATTACGACAAAACTATGTTTATGGAGGCTAATCCTAAAAAGAATCCGTGGTTATGGTGGGAAGA
AAGCCTTACTTGTGAAACCAAAG
Found at i:3523993 original size:476 final size:476
Alignment explanation
Indices: 3523087--3524733 Score: 2185
Period size: 476 Copynumber: 3.5 Consensus size: 476
3523077 GAAACCAAAG
* * *
3523087 CATCAATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAACCATAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAG
** * *
3523152 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTTTTTTCTAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTGG
*
3523217 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
131 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGTTT
** * * * * *
3523282 ATGGTA-CCTAATTTTGAATATAACAGGGATTAATATGACTATTCATGTTTATCTTATTTAAGTG
196 ATGG-AGCCTAATCCTGAAAAGAATAGGGATTAATATGACTATTCATGTTTGTCTTATTTAAGAG
* * *
3523346 ACAAACTTTGATTCTATCGAAAACAGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAAT
260 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGGAAACCTTTTCTTGCGACACCAAAGCATCAAT
* * * * *
3523411 TTCATCTATCCTAATGAAGGGAATGTGTTCAAGGTTCCTAATCTTGAAAAGAGTGAAGACTGTTA
325 CTCATGTATCCTAATGAAGGGAATGTGTTCTAGGTTCCTAATCTTGAAAAGAGTGGAGACTGATA
* *
3523476 CAAGAATCGATGCTTGTCTTTTTTATGGGAGGAACTTTGATTTTAAGGAAAATTAGGCAGAGAAA
390 CAAGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATTAGGCAAAGAAA
3523541 AGATTTCCAAGCTAAAAAAAAT
455 AGATTTCCAAGCTAAAAAAAAT
* * *
3523563 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAAAGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAG
* * ** * *
3523628 ATTATTACTAGAATCTATGTTTGTCTTGTTTGAGACACGAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTGG
** ** * *
3523693 GAAGAAAGCCATT-CTTGGGAAACCAAAGCATCAATATGGTGCATCATTATGACAAGACTATGTT
131 GAAGAAAGCC-TTCCTTGCAAAACCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGTT
* * * * * *
3523757 TATGGAGGCTAATCCTAAAAAGAATAGGGATTAGTATGGCAATTCATGTTTGTCTAATTTAAGAG
195 TATGGAGCCTAATCCTGAAAAGAATAGGGATTAATATGACTATTCATGTTTGTCTTATTTAAGAG
* * *
3523822 ACAAACTTTGATTCTGTCAAAAATGGTGGAAAGGAAACCTTTTCTTGTGACACCAAAGCATCAAT
260 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGGAAACCTTTTCTTGCGACACCAAAGCATCAAT
* * * * * * * *
3523887 GTCATGTATCCTATTGAAGGGAATGTGTTTTTGGCTCCCAATCTTAAAAAGAATGGAGACTGCAT
325 CTCATGTATCCTAATGAAGGGAATGTGTTCTAGGTTCCTAATCTTGAAAAGAGTGGAGACTG-AT
* * * *
3523952 -CAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAA-TAGGGCAAAGA
389 ACAAGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATTA-GGCAAAGA
*
3524015 AAATG-TTTCCATGC-AAAAGAAAAT
453 AAA-GATTTCCAAGCTAAAA-AAAAT
* * * *
3524039 CATCAATATCATTTATCCTAATGAGGGGAATTTGTTTATAGTGCCTAACCATAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAG
* ** * * * *
3524104 ATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGCACTCATTTACTCTTTTCAAAAATTGGTGA
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTGG
* *
3524169 GAAGAAAGCCTTCCTTGCAAAACTAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
131 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGTTT
** * * **
3524234 ATGCTGCCTAATCCTGAAAAGAATGGGGATTAATATGACTACTCATGTAGGTCTTATTTAAGAGA
196 ATGGAGCCTAATCCTGAAAAGAATAGGGATTAATATGACTATTCATGTTTGTCTTATTTAAGAGA
* * *
3524299 CAAACTTTGATTCTATCAAAAACGGTGG-AAGGAAAACCTTTTCTTGCGAGACTAAAGCATTAAT
261 CAAACTTTGATTCTATCAAAAACGGTGGAAAGG-AAACCTTTTCTTGCGACACCAAAGCATCAAT
** **
3524363 CTCATGTATCCTAATGAAGGGAATGTGTTCTAATTTCCTAATCTTGAAAACTGTGGAGACT-ATT
325 CTCATGTATCCTAATGAAGGGAATGTGTTCTAGGTTCCTAATCTTGAAAAGAGTGGAGACTGA-T
* *
3524427 ACGAGAATCGATGCTTGTCTTTTTTAAGGGAGGGACTTTGATTTTAAGGAAAATTAGGCAAAGAA
389 ACAAGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATTAGGCAAAGAA
*
3524492 AAGATTTCCAAGCTAAAGAAAAT
454 AAGATTTCCAAGCTAAAAAAAAT
** * * * *
3524515 CATCAATAGAATTTATCCTAATGAGGACAATGTGTTTATAGTTCTTAATCACAAAATGAAAGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAG
* ** * *
3524580 ATTATTACTAGAATCCATGTTTGTCTTGTTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTGG
* ** ***
3524645 GAAGAAAGCCTTTCTTGCGTAACCAAAGCATCAATATGGCGCATCCTTATGAGAAGACTATGTTT
131 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGTTT
*
3524710 ATGGAGGCTAATCCTGAAAAGAAT
196 ATGGAGCCTAATCCTGAAAAGAAT
3524734 CCATGTTTAT
Statistics
Matches: 998, Mismatches: 160, Indels: 26
0.84 0.14 0.02
Matches are distributed among these distances:
474 1 0.00
475 15 0.02
476 973 0.97
477 9 0.01
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.32
Consensus pattern (476 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCACAAAATGAAAGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTGG
GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGTTT
ATGGAGCCTAATCCTGAAAAGAATAGGGATTAATATGACTATTCATGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCTATCAAAAACGGTGGAAAGGAAACCTTTTCTTGCGACACCAAAGCATCAATC
TCATGTATCCTAATGAAGGGAATGTGTTCTAGGTTCCTAATCTTGAAAAGAGTGGAGACTGATAC
AAGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATTAGGCAAAGAAAA
GATTTCCAAGCTAAAAAAAAT
Found at i:3524993 original size:263 final size:262
Alignment explanation
Indices: 3524515--3524996 Score: 653
Period size: 262 Copynumber: 1.8 Consensus size: 262
3524505 TAAAGAAAAT
* * *
3524515 CATCAATAGAATTTATCCTAATGAGGACAATGTGTTTATAGTTCTTAATCACAAAATGAAAGAAG
1 CATCAATAGAATTTATCCTAATGAGGACAATGTGTTTATAGTACCTAACCACAAAATGAAAGAAG
* * * * * *
3524580 ATTATTACTAGAATCCATGTTTGTCTTGTTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCAATGTTTGTCTTATATGAGGCACGAACTTAGACTTTACAAAAATTGGGGG
* ** **
3524645 GAAGAAAGCCTTTCTTGCGTAACCAAAGCATCAATATGGCGCATCCTTATGAGAAGACTATGTTT
131 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCACGCATCCTTATGAGAAGACTATGTTT
* *
3524710 ATGGAGGCTAATCCTGAAAAGAATCCATGTTTATGGTGGGAAGAATGCCTTACTTGCGAAACCAA
196 ATGGAGCCCAATCCTGAAAAGAATCCATGTTTATGGTGGGAAGAATGCCTTACTTGCGAAACCAA
3524775 AG
261 AG
** * * * *
3524777 CATCAATATCATTTATCCTACTGAGGAGAATGTGTTTATA-TGACCTAACCATAAAATGAATGAA
1 CATCAATAGAATTTATCCTAATGAGGACAATGTGTTTATAGT-ACCTAACCACAAAATGAAAGAA
* * *
3524841 GATCATTACTAGAATCAATGTTTGTCTTATATGAGGCACGAGCTTA-ACTTTTTTCTAAAATTGG
65 GATCATTACTAGAATCAATGTTTGTCTTATATGAGGCACGAACTTAGAC--TTTACAAAAATTGG
* * *
3524905 GGGGATGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATG
128 GGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCACGCATCCTTATGAGAAGACTATG
* *
3524970 TTTATGGTGCCCAATCTTGAAAAGAAT
193 TTTATGGAGCCCAATCCTGAAAAGAAT
3524997 GGGGATTAGT
Statistics
Matches: 187, Mismatches: 30, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
261 3 0.02
262 93 0.50
263 91 0.49
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (262 bp):
CATCAATAGAATTTATCCTAATGAGGACAATGTGTTTATAGTACCTAACCACAAAATGAAAGAAG
ATCATTACTAGAATCAATGTTTGTCTTATATGAGGCACGAACTTAGACTTTACAAAAATTGGGGG
GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCACGCATCCTTATGAGAAGACTATGTTT
ATGGAGCCCAATCCTGAAAAGAATCCATGTTTATGGTGGGAAGAATGCCTTACTTGCGAAACCAA
AG
Found at i:3525461 original size:738 final size:738
Alignment explanation
Indices: 3524039--3525467 Score: 2128
Period size: 738 Copynumber: 1.9 Consensus size: 738
3524029 AAAAGAAAAT
* *
3524039 CATCAATATCATTTATCCTAATGAGGGGAATTTGTTTATAGTGCCTAACCATAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCATAAAATGAATGAAG
* * * * * *
3524104 ATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGCACTCATTTACTCTTTTCAAAAATTGGTGA
66 ATCATTACTAGAATCAATGTTTGTCTCATATGAGGCACGCATTAACTCTTTTCAAAAATTGGGGA
*
3524169 GAAGAAAGCCTTCCTTGCAAAACTAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
131 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
*
3524234 ATGCTGCCTAATCCTGAAAAGAATGGGGATTAATATGACTACTCATGTAGGTCTTATTTAAGAGA
196 ATGCTGCCCAATCCTGAAAAGAATGGGGATTAATATGACTACTCATGTAGGTCTTATTTAAGAGA
* * * *
3524299 CAAACTTTGATTCTATCAAAAACGGTGGAAGGAAAACCTTTTCTTGCGAGACTAAAGCATTAATC
261 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATC
** * *
3524364 TCATGTATCCTAATGAAGGGAATGTGTTCTAATTTCCTAATCTTGAAAACTGTGGAGACTATTAC
326 TCATGTATCCTAATGAAGGGAATGTGTTCTAAGCTCCCAATCTTGAAAACAGTGGAGACTATTAC
* *
3524429 GAGAATCGATGCTTGTCTTTTTTAAGGGAGGGACTTTGATTTTAAGGAAAATTAGGCAAAGAAAA
391 GAGAATCGATGCTTGTCTTTTTTAAAGGAGGAACTTTGATTTTAAGGAAAATTAGGCAAAGAAAA
* * *
3524494 GATTTCCAAGCTAAAGAAAATCATCAATAGAATTTATCCTAATGAGGACAATGTGTTTATAGTTC
456 GATTTCCAAACTAAAGAAAATCATCAATAGAATTTATCCTAATGAGGACAATGTGTTTACAGTGC
* * * ** *
3524559 TTAATCACAAAATGAAAGAAGATTATTACTAGAATCCATGTTTGTCTTGTTTGAGGCATGAACTT
521 CTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCACGAACTT
* * ** *
3524624 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGTAACCAAAGCATCAATATGGCGCAT
586 ACACTTTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCGCGCAT
*
3524689 CCTTATGAGAAGACTATGTTTATGGAGGCTAATCCTGAAAAGAATCCATGTTTATGGTGGGAAGA
651 CCTTATGAGAAGACTATGTTTATGGAGCCTAATCCTGAAAAGAATCCATGTTTATGGTGGGAAGA
3524754 ATGCCTTACTTGCGAAACCAAAG
716 ATGCCTTACTTGCGAAACCAAAG
*
3524777 CATCAATATCATTTATCCTACTGAGGAGAATGTGTTTATA-TGACCTAACCATAAAATGAATGAA
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG-CCTAACCATAAAATGAATGAA
* * *
3524841 GATCATTACTAGAATCAATGTTTGTCTTATATGAGGCACG-AGCTTAACTTTTTTCTAAAATTGG
65 GATCATTACTAGAATCAATGTTTGTCTCATATGAGGCACGCA--TTAACTCTTTTCAAAAATTGG
* *
3524905 GGGGATGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATG
128 GGAGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATG
* * * * **
3524970 TTTATGGTGCCCAATCTTGAAAAGAATGGGGATTAGTA-GACTATTCATGTTTGTCTTATTTAAG
193 TTTATGCTGCCCAATCCTGAAAAGAATGGGGATTAATATGACTACTCATGTAGGTCTTATTTAAG
* * *
3525034 AGATAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCA
258 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCA
* * * ** * * * *
3525099 ATGTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTCCCAATCTTGAGAAGAGTGGAGATTGT
323 ATCTCATGTATCCTAATGAAGGGAATGTGTTCTAAGCTCCCAATCTTGAAAACAGTGGAGACTAT
* * *
3525164 TATGAGAATCGATGCTTTTCTTTTTTAAAGGAGGAACTTTGATTTTAAGGAAAATTGGGCAAAGA
388 TACGAGAATCGATGCTTGTCTTTTTTAAAGGAGGAACTTTGATTTTAAGGAAAATTAGGCAAAGA
* ** *
3525229 AAGGATTTCCAAACTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAG
453 AAAGATTTCCAAACTAAAGAAAATCATCAATAGAATTTATCCTAATGAGGACAATGTGTTTACAG
* *
3525294 TGCCTAATCACAAAATGAATGATGATCATTACTCA-AATCCATGTTTATCTCATTTGAGGCACGA
518 TGCCTAATCACAAAATGAAAGAAGATCATTACT-AGAATCCATGTTTATCTCATTTGAGGCACGA
* * *
3525358 ACTTACTCTTTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCGTCAATATCGT
582 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCGC
* * *
3525423 GTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAA
647 GCATCCTTATGAGAAGACTATGTTTATGGAGCCTAATCCTGAAAA
3525468 TAATGGGGAA
Statistics
Matches: 613, Mismatches: 74, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
737 3 0.00
738 496 0.81
739 114 0.19
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (738 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAACCATAAAATGAATGAAG
ATCATTACTAGAATCAATGTTTGTCTCATATGAGGCACGCATTAACTCTTTTCAAAAATTGGGGA
GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
ATGCTGCCCAATCCTGAAAAGAATGGGGATTAATATGACTACTCATGTAGGTCTTATTTAAGAGA
CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATC
TCATGTATCCTAATGAAGGGAATGTGTTCTAAGCTCCCAATCTTGAAAACAGTGGAGACTATTAC
GAGAATCGATGCTTGTCTTTTTTAAAGGAGGAACTTTGATTTTAAGGAAAATTAGGCAAAGAAAA
GATTTCCAAACTAAAGAAAATCATCAATAGAATTTATCCTAATGAGGACAATGTGTTTACAGTGC
CTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCACGAACTT
ACACTTTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCGCGCAT
CCTTATGAGAAGACTATGTTTATGGAGCCTAATCCTGAAAAGAATCCATGTTTATGGTGGGAAGA
ATGCCTTACTTGCGAAACCAAAG
Found at i:3526736 original size:474 final size:476
Alignment explanation
Indices: 3524777--3527605 Score: 3417
Period size: 474 Copynumber: 6.0 Consensus size: 476
3524767 GAAACCAAAG
* * * *
3524777 CATCAATATCATTTATCCTACTGAGGAGAATGTGTTTATA-TGACCTAACCATAAAATGAATGAA
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG-CCTAATCACAAAATGAAAGAA
* * * * *
3524841 GATCATTACTAGAATCAATGTTTGTCTTATATGAGGCACGAGCTTA-ACTTTTTTCTAAAATTGG
65 GATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAC--TTTACAAAAATTGG
* * *
3524905 GGGGATGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATG
128 TGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATG
* * **
3524970 TTTATGGTGCCCAATCTTGAAAAGAATGGGGATTAGTA-GACTATTCATGTTTGTCTTATTTAAG
193 TTTATGGTGCCTAATCCTGAAAAGAATGGGGAAAAGTATGACTATTCATGTTTGTCTTATTTAAG
* * ** *
3525034 AGATAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCA
258 AGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCA
* * * * * *
3525099 ATGTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTCCCAATCTTGAGAAGAGTGGAGATTGT
323 ATGTCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGT
* * *
3525164 TATGAGAATCGATGCTTTTCTTTTTTAAAGGAGGAACTTTGATTTTAAGGAAAATTGGGCAAAGA
388 TATGAGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTATGGAAAATTGGGCAAAGA
* *
3525229 AAGGATTTCCAAACTAAAGAAAAT
453 AAAGATTTCCAAGCTAAAGAAAAT
* * *
3525253 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGATG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAG
* * **
3525318 ATCATTACTCA-AATCCATGTTTATCTCATTTGAGGCACGAACTTACTCTTTACAAAAATTGGTG
66 ATCATTACT-AGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* *
3525382 GGAAGAAAGCCTTCCTTGCAAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTTTGTT
130 GGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTT
* * *
3525447 TATGGTGCCTAATCCTGAAAATAATGGGGAATAGCATGACTATTCATG-TTGTCTTATTTAAGAG
195 TATGGTGCCTAATCCTGAAAAGAATGGGGAAAAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * *
3525511 ACAAACTTTGATTCTACCAAAAACTA-TGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAT
260 ACAAACTTTGATTCTATCAAAAA-TAGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAA
* * * * *
3525575 TATCATATATCCTAATGAAGGGGATGTGTTCTTGGTTCCCAATCTTAAAAAGAGTAGAGACTATT
324 TGTCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTT
* * * **
3525640 ATGAGAATCG-TAGATTGTCTTTTTTAAGGGAGGAA-----A----A-GTAAAATTAGGCATGGA
389 ATGAGAATCGAT-GCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTATGGAAAATTGGGCAAAGA
*
3525694 AAAGATTTCCAGGCTAAAGAAAATTAT
453 AAAGATTTCCAAGCTAAAG-AAA--AT
* * *
3525721 CATTATCATTATCATTTATCGTAATGAGGAGAATGTGTTTATAGTGCCTAA-CTATAAAATGAAT
1 C---ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAA-
* * * * ** *
3525785 A-AAGATCATTACTCGAATCCATGTTTGTCTCATTTGAGGCACTAATTTACTCTTTTCAAAAATT
61 AGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATT
* *
3525849 GGTGGGAAGAAAGCTTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAC-A
126 GGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * * *
3525913 TGTTTATGGTGCCTAATCCT-----GAA--GGGATTAA-TTTGACTATTCTTATTTGTCTTATTT
191 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA-AAAGTATGACTATTCATGTTTGTCTTATTT
* ** * *
3525970 AAGAGACAAATTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCAACACTGAAA-C
255 AAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAACCTTTTCTTGCGACAC-CAAAGC
* * * * * * *
3526034 ACCAATGTCATCTATCCTAATGAAGGAAATGTGTTCTAGATTCCTAATCTTGAAAAGAGTAGAGA
319 ATCAATGTCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGA
* * * * * * * *
3526099 CTATTACGAGAATCGATGCTTATCTTTTTTAAGGAAGGGACTTTAATTTTAAGGAGAATTGGGCA
384 CTGTTATGAGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTATGGAAAATTGGGCA
3526164 AAGAAAAGATTTCCAAGCTAAAGAAAAT
449 AAGAAAAGATTTCCAAGCTAAAGAAAAT
* * * * * * *
3526192 CTTTAATATTATTTATCCTAATGGGGACAATGTGTTTATAGTTCTTAATCACAAAATGAAAGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAG
** ** * * *
3526257 ATTGTCCCTAGAATCCATGTTTGTCTTGTTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGC
66 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * * *
3526322 GAAGAAAGCCTTTCTTACGAACCCAAAGCATCAAAATGGTGCATCCTTATGAGAAGACTACGTTT
131 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* * * *
3526387 ATGGTGCCTAATCCTGAAAAGAATGGGGAAAAGTATGACAATTCACGTTTGCCTTATTTAAGTGA
196 ATGGTGCCTAATCCTGAAAAGAATGGGGAAAAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * *
3526452 CAAACTTTGATTCTATCAAAAATAGTGGAATGAAAACCTTTTCTTCCGACACCAAACCATAAATG
261 CAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATG
*
3526517 TCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAGTGGAGACTGTTAT
326 TCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTAT
* * *
3526582 GAGAATCGACGC-T-TCTTTTTTAAGGGATGAACTTTGATTTTATGGAAAATTGGGCATAGAAAA
391 GAGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTATGGAAAATTGGGCAAAGAAAA
* *
3526645 TATTTCCATGCTAAAGAAAAT
456 GATTTCCAAGCTAAAGAAAAT
* * * *
3526666 CATCAATATCATTTATCCTAATGGGGACAATGTGTTTATAGTTCTTAATCACAAAATGAAAGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAG
** ** * * *
3526731 ATTGTCCCTAGAATCCATGTTTGTCTTGTTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGC
66 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * * *
3526796 GAAGAAAGCCTTTCTTACGAACCCAAAGCATCAAAATGGTGCATCCTTATGAGAAGACTACGTTT
131 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* * * *
3526861 ATGGTGCCTAATCCTGAAAAGAATGGGGAAAAGTATGACAATTCACGTTTGCCTTATTTAAGTGA
196 ATGGTGCCTAATCCTGAAAAGAATGGGGAAAAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * *
3526926 CAAACTTTGATTCTATCAAAAATAGTGGAATGAAAACCTTTTCTTCCGACACCAAACCATAAATG
261 CAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATG
*
3526991 TCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAGTGGAGACTGTTAT
326 TCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTAT
* * *
3527056 GAGAATCGACGC-T-TCTTTTTTAAGGGATGAACTTTGATTTTATGGAAAATTGGGCATAGAAAA
391 GAGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTATGGAAAATTGGGCAAAGAAAA
* *
3527119 TATTTCCATGCTAAAGAAAAT
456 GATTTCCAAGCTAAAGAAAAT
* ** ** *
3527140 CATCAATATCATTTATCATAACAAGGAGAATGCATTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAG
* * *
3527205 ATCATTACTAGAATCAATGTTTG-C--A--T----CACGGACTTAGACTTTACAAAAATTGGTGT
66 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * *
3527261 GAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATTCTTATGAGAAGACTATGATT
131 GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* * * ** ** * *
3527326 ATGGTGCCTAATCCTTAAAAGAGTGAGGATTAGTACAACTATTCATGTATGTCTTGTTTAAGAGA
196 ATGGTGCCTAATCCTGAAAAGAATGGGGAAAAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* *
3527391 CAAACTTTGATTTTATCAAAAACT-GTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAAT
261 CAAACTTTGATTCTATCAAAAA-TAGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAAT
* * * *
3527455 G-CTTTTTGTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGAATGTT
325 GTC-ATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTT
* * *
3527519 ATGAGAATCAATGCTTGTCTTTTTTAAAGGAGGAACTTTGATTTT-TAAGAAAATTGGGCAAAGA
389 ATGAGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTAT-GGAAAATTGGGCAAAGA
* *
3527583 AAAGATTTCTAGGCTAAAGAAAA
453 AAAGATTTCCAAGCTAAAGAAAA
3527606 CCACAAAATG
Statistics
Matches: 2075, Mismatches: 231, Indels: 103
0.86 0.10 0.04
Matches are distributed among these distances:
463 14 0.01
464 153 0.07
465 296 0.14
466 7 0.00
467 62 0.03
468 153 0.07
469 23 0.01
470 22 0.01
471 172 0.08
473 5 0.00
474 640 0.31
475 268 0.13
476 256 0.12
477 4 0.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (476 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAG
ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGGAAAAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATG
TCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTGTTAT
GAGAATCGATGCTTGTCTTTTTTAAGGGAGGAACTTTGATTTTATGGAAAATTGGGCAAAGAAAA
GATTTCCAAGCTAAAGAAAAT
Found at i:3526921 original size:158 final size:158
Alignment explanation
Indices: 3526275--3526966 Score: 395
Period size: 158 Copynumber: 4.4 Consensus size: 158
3526265 TAGAATCCAT
* * *
3526275 GTTTGTCTTGTTTAAGGCACGAACTTAGACTTTA-CAAAAATTGGTGCGAAGAAAGCCTTTCTTA
1 GTTTGCCTTATTTAAGGCACGAACTTAGACTTTATCAAAAATTGGTGCGAAGAAAACCTTTCTTA
* * *
3526339 CGAACCCAAAGCATCAAAATGGTGCATCCTTATGAGAAGACTACGTTTATGGTGCCTAATCCTGA
66 CGAACCCAAAGCATCAAAATGATGCATCCTAATGAGAAGAATACGTTTATGGTGCCTAATCCTGA
*
3526404 AAAGAATGGGGAAAAGTATGACAATTCAC
131 AAAGAATGGAG-AAAGTATGACAATTCAC
* * *
3526433 GTTTGCCTTATTTAAGTG-ACAAACTTTGA-TTCTATCAAAAA-TAGTG-GAATGAAAACCTTTT
1 GTTTGCCTTATTTAAG-GCACGAACTTAGACTT-TATCAAAAATTGGTGCGAA-GAAAACC-TTT
* * ** * ** *
3526494 CTTCCG-ACACCAAACCAT--AAATGTCATATATCCTAATGA-AGGGAATGTGTTCT-TGGTTCC
62 CTTACGAAC-CCAAAGCATCAAAATG--ATGCATCCTAATGAGA-AGAATACGTT-TATGGTGCC
* * ** *
3526554 TAATCTTGAAAAGAGTGGAGACTGTTATGAGAA-TCGAC
122 TAATCCTGAAAAGAATGGAGAAAG-TATGACAATTC-AC
* * * * * * ** ** *
3526592 GCTT--CTTTTTTAAGGGATGAACTTTGATTTTATGGAAAATTGG-GC-ATAGAAAATATTTCCA
1 GTTTGCCTTATTTAAGGCACGAACTTAGACTTTATCAAAAATTGGTGCGA-AGAAAACCTTT-CT
* * *** * * * ** * * * ** * * *
3526653 TGCTAAAGAAAATCATCAATATCATTTATCCTAATGGGGACAATGTGTTTATAGTTCTTAATCAC
64 TACGAACCCAAAGCATCAAAATGATGCATCCTAATGAGAAGAATACGTTTATGGTGCCTAATC-C
* * ** * * * *
3526718 --AAAATGAAAGAAGATTGTCCCT-AGAATCCAT
128 TGAAAA-GAATGGAGAAAGT--ATGACAATTCAC
* * *
3526749 GTTTGTCTTGTTTAAGGCACGAACTTAGACTTTA-CAAAAATTGGTGCGAAGAAAGCCTTTCTTA
1 GTTTGCCTTATTTAAGGCACGAACTTAGACTTTATCAAAAATTGGTGCGAAGAAAACCTTTCTTA
* * *
3526813 CGAACCCAAAGCATCAAAATGGTGCATCCTTATGAGAAGACTACGTTTATGGTGCCTAATCCTGA
66 CGAACCCAAAGCATCAAAATGATGCATCCTAATGAGAAGAATACGTTTATGGTGCCTAATCCTGA
*
3526878 AAAGAATGGGGAAAAGTATGACAATTCAC
131 AAAGAATGGAG-AAAGTATGACAATTCAC
* * *
3526907 GTTTGCCTTATTTAAGTG-ACAAACTTTGA-TTCTATCAAAAA-TAGTG-GAATGAAAACCTTT
1 GTTTGCCTTATTTAAG-GCACGAACTTAGACTT-TATCAAAAATTGGTGCGAA-GAAAACCTTT
3526967 TCTTCCGACA
Statistics
Matches: 390, Mismatches: 104, Indels: 80
0.68 0.18 0.14
Matches are distributed among these distances:
156 10 0.03
157 104 0.27
158 150 0.38
159 124 0.32
160 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (158 bp):
GTTTGCCTTATTTAAGGCACGAACTTAGACTTTATCAAAAATTGGTGCGAAGAAAACCTTTCTTA
CGAACCCAAAGCATCAAAATGATGCATCCTAATGAGAAGAATACGTTTATGGTGCCTAATCCTGA
AAAGAATGGAGAAAGTATGACAATTCAC
Found at i:3527057 original size:159 final size:158
Alignment explanation
Indices: 3526383--3527057 Score: 461
Period size: 159 Copynumber: 4.3 Consensus size: 158
3526373 AGAAGACTAC
* * * **
3526383 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGAAAAG-TATGACAATTCACGTTTGCCTTATTTA
1 GTTTATGGTTCCTAATCTTGAAAAGAATGGAG-ACTGTTATGACAATTCACGTTTGCCTTATTTA
3526447 AGTGACAAACTTTGATTCTATCAAAAATAGTGGAATGAAAACCTTTTCTTCCGACACCAAACCAT
65 AGTGACAAACTTTGATTCTATCAAAAATAGTGGAATGAAAACCTTTTCTTCCGACACCAAACCAT
3526512 AAATGTCATATATCCTAATGAAGGGAATGT
130 AAATGTCATATATCCTAATG-AGGGAATGT
* * * *
3526542 GTTCT-TGGTTCCTAATCTTGAAAAGAGTGGAGACTGTTATGAGAA-TCGACGCTT--CTTTTTT
1 GTT-TATGGTTCCTAATCTTGAAAAGAATGGAGACTGTTATGACAATTC-ACGTTTGCCTTATTT
* ** * ** * * ** * * * * * ** *
3526603 AAGGGATGAACTTTGATTTTATGGAAAATTG-GGCATAGAAAATATTTCCATGCTAAAGAAAATC
64 AAGTGACAAACTTTGATTCTATCAAAAATAGTGGAAT-GAAAACCTTTTCTTCCGACACCAAACC
* * *
3526667 ATCAATATCATTTATCCTAATG-GGGACAATGT
128 ATAAATGTCATATATCCTAATGAGGG--AATGT
* * ** * * * ** * * * * *
3526699 GTTTATAGTTCTTAATC-ACAAAATGAAAGAAGATTGTCCCT-AGAATCCATGTTTGTCTTGTTT
1 GTTTATGGTTCCTAATCTTGAAAA-GAATGGAGACTGT-TATGACAATTCACGTTTGCCTTATTT
* * * * *
3526762 AAG-GCACGAACTTAGACTT-TA-CAAAAATTGGTGCGAA-GAAAGCC-TTTCTTACGA-ACCCA
64 AAGTG-ACAAACTTTGA-TTCTATCAAAAA-TAGTG-GAATGAAAACCTTTTCTTCCGACA-CCA
* * ** * * * **
3526821 AAGCATCAAAATG--GTGCATCCTTATGAGAAGACTAC
124 AACCAT--AAATGTCATATATCCTAATGAG-GGAATGT
* * * **
3526857 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGAAAAG-TATGACAATTCACGTTTGCCTTATTTA
1 GTTTATGGTTCCTAATCTTGAAAAGAATGGAG-ACTGTTATGACAATTCACGTTTGCCTTATTTA
3526921 AGTGACAAACTTTGATTCTATCAAAAATAGTGGAATGAAAACCTTTTCTTCCGACACCAAACCAT
65 AGTGACAAACTTTGATTCTATCAAAAATAGTGGAATGAAAACCTTTTCTTCCGACACCAAACCAT
3526986 AAATGTCATATATCCTAATGAAGGGAATGT
130 AAATGTCATATATCCTAATG-AGGGAATGT
*
3527016 GTTCT-TGGTTCCTAATCTTGAAAAGAGTGGAGACTGTTATGA
1 GTT-TATGGTTCCTAATCTTGAAAAGAATGGAGACTGTTATGA
3527058 GAATCGACGC
Statistics
Matches: 373, Mismatches: 107, Indels: 72
0.68 0.19 0.13
Matches are distributed among these distances:
155 3 0.01
156 9 0.02
157 113 0.30
158 96 0.26
159 138 0.37
160 12 0.03
161 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (158 bp):
GTTTATGGTTCCTAATCTTGAAAAGAATGGAGACTGTTATGACAATTCACGTTTGCCTTATTTAA
GTGACAAACTTTGATTCTATCAAAAATAGTGGAATGAAAACCTTTTCTTCCGACACCAAACCATA
AATGTCATATATCCTAATGAGGGAATGT
Found at i:3527339 original size:939 final size:939
Alignment explanation
Indices: 3524777--3527605 Score: 3465
Period size: 939 Copynumber: 3.0 Consensus size: 939
3524767 GAAACCAAAG
* *
3524777 CATCAATATCATTTATCCTACTGAGGAGAATGTGTTTATA-TGACCTAACCATAAAATGAATGAA
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT-ACCTAA-CATAAAATGAAAGAA
* * * * *
3524841 GATCATTACTAGAATCAATGTTTGTCTTATATGAGGCACGAGCTTAACTTTTTTCTAAAATTGGG
64 GATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAAC--TTTTCAAAAATTGGT
* *
3524906 GGGATGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT
127 GGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT
* * *
3524971 TTATGGTGCCCAATCTTGAAAAGAATGGGGATTAGTA-GACTATTCATGTTTGTCTTATTTAAGA
192 TTATGGTGCCTAATCCTGAAAAGAATGGGGATAAGTATGACTATTCATGTTTGTCTTATTTAAGA
* * *
3525035 GATAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAA
257 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAA-CATCAA
* * * * * * *
3525100 TGTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGCTCCCAATCTTGAGAAGAGTGGAGATTGTT
321 TGTCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAGTGGAGACTGTT
*
3525165 ATGAGAATCGATGCTTTTCTTTTTTAAAGGAGGAACTTTGATTTTAAGGAAAATTGGGCAAAGAA
386 ATGAGAATCGATGC-TTTCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATTGGGCAAAGAA
* * *
3525230 AGGATTTCCAAACTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGT
450 AAGATTTCCAAGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* *
3525295 GCCTAATCACAAAATGAATGATGATCATTACTCA-AATCCATGTTTATCTCATTTGAGGCACGAA
515 GCCTAATCACAAAATGAATGAAGATCATTACT-AGAATCCATG-TT-T-GCA-TT----CACGAA
** * * *
3525359 CTTACTCTTTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCGTCAATATCGTG
571 CTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTG
* * *
3525424 TATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAATAATGGGGAATAGCATGACTA
636 TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAATAGTATGACTA
*
3525489 TTCATG-TTGTCTTATTTAAGAGACAAACTTTGATTCTACCAAAAACTA-TGGAAAGAAAACCTT
701 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTAGTGGAAAGAAAACCTT
* * *
3525552 TTCTTGTGACACCAAAGCATCATTATCATATATCCTAATGAAGGGGATGTGTTCTTGGTTCCCAA
766 TTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAA
* * * *
3525617 TCTTAAAAAGAGTAGAGACTATTATGAGAATCGTAGATTGTCTTTTTTAAGGGAGGAA-----A-
831 TCTTGAAAAGAGTGGAGACTGTTATGAGAATCG-AG-CTGTCTTTTTTAAGGGAGGAACTTTGAT
* * *
3525676 ---A-GTAAAATTAGGCATGGAAAAGATTTCCAGGCTAAAGAAAATTAT
894 TTTATGGAAAATTGGGCATAGAAAAGATTTCCAGGCTAAAG-AAA--AT
* * *
3525721 CATTATCATTATCATTTATCGTAATGAGGAGAATGTGTTTATAGTGCCTAACTATAAAATGAATA
1 C---ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAAC-ATAAAATGAA-A
* * * * *
3525786 -AAGATCATTACTCGAATCCATGTTTGTCTCATTTGAGGCACTAATTTACTCTTTTCAAAAATTG
61 GAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTA-ACTTTTCAAAAATTG
3525850 GTGGGAAGAAAG-CTTTCCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGAC-A
125 GTGGGAAGAAAGCCTTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTA
* * *
3525913 TGTTTATGGTGCCTAATCCT-----GAA--GGGATTAA-TTTGACTATTCTTATTTGTCTTATTT
189 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA-TAAGTATGACTATTCATGTTTGTCTTATTT
* * *
3525970 AAGAGACAAATTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCAACACTGAAACA
253 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACAC-CAAACA
* * * * * *
3526035 CCAATGTCATCTATCCTAATGAAGGAAATGTGTTCTAGATTCCTAATCTTGAAAAGAGTAGAGAC
317 TCAATGTCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAGTGGAGAC
* * * * * *
3526100 TATTACGAGAATCGATGCTTATCTTTTTTAAGGAAGGGACTTTAATTTTAAGGAGAATTGGGCAA
382 TGTTATGAGAATCGATGCTT-TCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATTGGGCAA
* * * * *
3526165 AGAAAAGATTTCCAAGCTAAAGAAAATCTTTAATATTATTTATCCTAATGGGGACAATGTGTTTA
446 AGAAAAGATTTCCAAGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * ** ** *
3526230 TAGTTCTTAATCACAAAATGAAAGAAGATTGTCCCTAGAATCCATGTTTGTCTTGTTTAAGGCAC
511 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG-C---ATT----CAC
* * * * *
3526295 GAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTTCTTACGAACCCAAAGCATCAAAATG
568 GAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATC
* * *
3526360 GTGCATCCTTATGAGAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAAAAGTATGA
633 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAATAGTATGA
* * * * *
3526425 CAATTCACGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAAAAA-TAGTGGAATGAAAAC
698 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTAGTGGAAAGAAAAC
** * *
3526489 CTTTTCTTCCGACACCAAACCATAAATGTCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCC
763 CTTTTCTTGTGACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCC
* *
3526554 TAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCGACGCT-TCTTTTTTAAGGGATGAACTTTG
828 CAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCGA-GCTGTCTTTTTTAAGGGAGGAACTTTG
* *
3526618 ATTTTATGGAAAATTGGGCATAGAAAATATTTCCATGCTAAAGAAAAT
892 ATTTTATGGAAAATTGGGCATAGAAAAGATTTCCAGGCTAAAGAAAAT
* * * * *
3526666 CATCAATATCATTTATCCTAATGGGGACAATGTGTTTATAGTTCTTAATCACAAAATGAAAGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAA-CATAAAATGAAAGAAG
** ** * * * *
3526731 ATTGTCCCTAGAATCCATGTTTGTCTTGTTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGC
65 ATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTA-ACTTTTCAAAAATTGGTGG
* * * * ** * *
3526796 GAAGAAAGCCTTTCTTACGAACCCAAAGCATCAAAATGGTGCATCCTTATGAGAAGACTACGTTT
129 GAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
* * * * *
3526861 ATGGTGCCTAATCCTGAAAAGAATGGGGAAAAGTATGACAATTCACGTTTGCCTTATTTAAGTGA
194 ATGGTGCCTAATCCTGAAAAGAATGGGGATAAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
** * * *
3526926 CAAACTTTGATTCTATCAAAAATAGTGGAATGAAAACCTTTTCTTCCGACACCAAACCATAAATG
259 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAA-CATCAATG
3526991 TCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAGTGGAGACTGTTAT
323 TCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAGTGGAGACTGTTAT
* * * * *
3527056 GAGAATCGACGC-TTCTTTTTTAAGGGATGAACTTTGATTTTATGGAAAATTGGGCATAGAAAAT
388 GAGAATCGATGCTTTCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATTGGGCAAAGAAAAG
* * ** **
3527120 ATTTCCATGCTAAAGAAAATCATCAATATCATTTATCATAACAAGGAGAATGCATTTATAGTGCC
453 ATTTCCAAGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* *
3527185 TAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGCA-TCACGGACTTAGACTTTAC
518 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCATTCACGAACTTAGACTTTAC
* *
3527249 AAAAATTGGTGTGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATTCTTATGAG
583 AAAAATTGGTGCGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAG
* * * * * ** *
3527314 AAGACTATGATTATGGTGCCTAATCCTTAAAAGAGTGAGGATTAGTACAACTATTCATGTATGTC
648 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAATAGTATGACTATTCATGTTTGTC
* *
3527379 TTGTTTAAGAGACAAACTTTGATTTTATCAAAAACT-GTGGAAAGAAAACCTTTTCTTGTGACAC
713 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACTAGTGGAAAGAAAACCTTTTCTTGTGACAC
* * *
3527443 CAAAGCATCAATG-CTTTTTGTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA
778 CAAAGCATCAATGTC-ATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGA
* * * *
3527507 GTGGAGAATGTTATGAGAATCAATGCTTGTCTTTTTTAAAGGAGGAACTTTGATTTT-TAAGAAA
842 GTGGAGACTGTTATGAGAATCGA-GC-TGTCTTTTTTAAGGGAGGAACTTTGATTTTAT-GGAAA
* *
3527571 ATTGGGCAAAGAAAAGATTTCTAGGCTAAAGAAAA
904 ATTGGGCATAGAAAAGATTTCCAGGCTAAAGAAAA
3527606 CCACAAAATG
Statistics
Matches: 1604, Mismatches: 233, Indels: 99
0.83 0.12 0.05
Matches are distributed among these distances:
937 2 0.00
938 28 0.02
939 673 0.42
940 147 0.09
941 62 0.04
942 150 0.09
943 27 0.02
944 1 0.00
945 25 0.02
946 68 0.04
947 97 0.06
948 168 0.10
949 6 0.00
950 150 0.09
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (939 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAACATAAAATGAAAGAAGA
TCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAACTTTTCAAAAATTGGTGGGA
AGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTAT
GGTGCCTAATCCTGAAAAGAATGGGGATAAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
AACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAACATCAATGTCA
TATATCCTAATGAAGGGAATGTGTTCTTGGTTCCTAATCTTGAAAAGAGTGGAGACTGTTATGAG
AATCGATGCTTTCTTTTTTAAGGGAGGAACTTTGATTTTAAGGAAAATTGGGCAAAGAAAAGATT
TCCAAGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
TCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCATTCACGAACTTAGACTTTACAAA
AATTGGTGCGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
ACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAATAGTATGACTATTCATGTTTGTCTTA
TTTAAGAGACAAACTTTGATTCTATCAAAAACTAGTGGAAAGAAAACCTTTTCTTGTGACACCAA
AGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGG
AGACTGTTATGAGAATCGAGCTGTCTTTTTTAAGGGAGGAACTTTGATTTTATGGAAAATTGGGC
ATAGAAAAGATTTCCAGGCTAAAGAAAAT
Found at i:3528522 original size:475 final size:472
Alignment explanation
Indices: 3527607--3530241 Score: 3091
Period size: 475 Copynumber: 5.5 Consensus size: 472
3527597 TAAAGAAAAC
* * * * * **
3527607 CACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTGATGTAAGAACATACTCT
1 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * ** *
3527672 TTACAAAAATTGGTGGGAAGAAAGCCTTCATTGTGAAACCAAAGCATCAGTATTTTGTATCCTTG
66 TTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCATGTATCCTTA
* * * * *
3527737 TGAGTAGACTATGTATATGGCGCCTAATCTTGAAAAGAATAGGGATTAGTATGACTATTCAT-TT
131 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * * *
3527801 TGTCTTATTTAAGAGACAAACTTTGATTCTA-CGAAAAACGGTTGAAAGAAAACCTTTTCTTGCG
196 TGCCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACAGTGGAAAGAAAACATTTTCTTGCG
* *
3527865 ACCCCAAAGCATCAATGTCT-TGTATCCTAATGAAGGCAAAT-TGTTCTTGGCTCCCAATCTAGA
260 ACACCAAAGCATCAATGT-TATGTATCCTAATGAAGG--AATGTGTTCTTGGCTCCCAATCTTGA
* * * * * * *
3527928 AAAGAATAGAGA-TTGTTATGAGAATTGATGCTTGCCATATTTAAGGGATGAACCTTAAATTTAA
322 AAAGAATGGAGACTTGTCA--AGAATCGATGCTTGTCATATTTAAGGGATGAA-TTTGATTTTAA
* *
3527992 GGAAAATAGGGTAAAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGA
384 GGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAAAAATCATCAATATCATTTATCCTAATGA
* * *
3528057 GGAGAATATATTCATAGTGCCTAAT
448 GGAGAATGTGTTTATAGTGCCTAAT
* *
3528082 CATAAAATGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCATTTGAGGCACGAACTTAGACT
1 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * * * *
3528147 TTACAAAAATTGGTGTGAAGAAAGCCTTCCTTACAAAACTAGAGCATCAACATCATGTATCCTAA
66 TTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCATGTATCCTTA
* * * *
3528212 TGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGTGATTAGTGTCACTATTCATGTT
131 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
*
3528277 TGCCTTATTTAAGAGACAAACTTTGATGCTATCAAAAA-AGGTGGAAAGAAAACATTTTCTTGCG
196 TGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACA-GTGGAAAGAAAACATTTTCTTGCG
* * *
3528341 ACACCAAAGCATCAATGTTAGGTATCCTAATGAAGAGATTGTGTTCTTAGCTCCCAATCTTGAAA
260 ACACCAAAGCATCAATGTTATGTATCCTAATGAAG-GAATGTGTTCTTGGCTCCCAATCTTGAAA
* *
3528406 AGAATGGAGACTATGTCAAGAATAGATGCTTGTCATATTTAGGGGATGAATATTGATTTTAAGGA
324 AGAATGGAGACT-TGTCAAGAATCGATGCTTGTCATATTTAAGGGATGAAT-TTGATTTTAAGGA
* *
3528471 AATTAGGGCAAAGAAAAGATTTCCATACAAAAAAAATCATCAATATCATTTATCCTAA-GAAGGA
387 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATG-AGGA
* * *
3528535 AAATGTGTTCATAGTGCCTACT
451 GAATGTGTTTATAGTGCCTAAT
* * * ** *
3528557 CACAAAATGAATGAAGATCACTACTGGAATCCATGTTTATCTCATTTGAGAAATGAACTTAGACT
1 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * * * *
3528622 TTACAAAAATTTGTGTGAATAAAGCCTTTCTTACGAAACTAAAGCATCAATATCGTGTATCCTTA
66 TTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCATGTATCCTTA
* *
3528687 TGAGAATACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATCACTATTCATGTT
131 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
3528752 TGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAACATTTTCTTGCGA
196 TGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAACATTTTCTTGCGA
* * *
3528817 CACCAAAGCATCAATGTCAAGTATCCTAATGAAGAGAATGTGTTCTTGGCTCCCAATCATGAAAA
261 CACCAAAGCATCAATGTTATGTATCCTAATGAAG-GAATGTGTTCTTGGCTCCCAATCTTGAAAA
* * *
3528882 CAATGCAGACTATGTCAAGAATCGATGCTCGTCATATTTAAGGGATGAATTTTGATTTTAAGGAA
325 GAATGGAGACT-TGTCAAGAATCGATGCTTGTCATATTTAAGGGATGAA-TTTGATTTTAAGGAA
* * *
3528947 AATAAGGCAAAGAAAAGATTTCCATTCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAG
388 AATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAG
* * *
3529012 AATGTGTTTTTAGTTCTTAAT
452 AATGTGTTTATAGTGCCTAAT
* * * * * **
3529033 -ACAAAATAAATGAAAATCATTACAAGAATCCTTGTTTTTCTTGTTTGAGGCACGAACTTAGACT
1 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* *
3529097 TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGGCA--CATCCT
66 TTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATAT--CATGTATCCT
* * * ** * * * *
3529160 TTTGAGTAGACTTTGCATATGGTGCCTAATCTCTCGAAAAGAATAGGGACTATTTTGACTATTCA
129 TATGAGAAGACTATGTTTATGGTGCCTAATC-CT-GAAAAGAATGGGGATTAGTATGACTATTCA
* * * *
3529225 TATTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACAGTGGAAAGAAAAGCA-TTTGT
192 TGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAA-CATTTTCT
* * *
3529289 TGCGACACTAAAGCATCAATGTCATG-----T-AT-------TGTGTTCTTGG-TTCCAGATCTT
256 TGCGACACCAAAGCATCAATGTTATGTATCCTAATGAAGGAATGTGTTCTTGGCTCCCA-ATCTT
* * *
3529340 GAAAAGAATCGG-GA-TTGTTGCGAGAATCGATGCTTGTCAGATTAAAGGGATGAACTTTGATTT
320 GAAAAGAAT-GGAGACTTG-T-CAAGAATCGATGCTTGTCATATTTAAGGGATGAA-TTTGATTT
* * * *
3529403 TAAGGAAAATACGACAAAGAAATGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
381 TAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAA
*
3529468 -GAAAGAGAATGTGTTTATAGTGCCTAAT
445 TG-AGGAGAATGTGTTTATAGTGCCTAAT
* * * * * *
3529496 CACATAATTAACGAAGATAATTACTAGAATCAATGTTTGTCTCATTTGAGGCACGAACTTACACT
1 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * *
3529561 TTCCAAAAATTGGTTGGAAGAAAGCCTTCCTTGCGAAACCAAAGCGTCAATATAGCGCCTATTTT
66 TTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATAT-----C-A---T
* * *
3529626 GAAAGCCTTCCTTATGGGAAGACTATGTTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGTA
122 G-TA----TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * * * *
3529691 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATAGCGAAAAGAAA
182 TGACTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAA
* * * * * *
3529756 ACGTTTTCTTGTGACACCAAAGCATCAATGTCATCTATCCTAATAAAGGGAATGTGTTCTTGGTT
247 ACATTTTCTTGCGACACCAAAGCATCAATGTTATGTATCCTAATGAA-GGAATGTGTTCTTGGCT
* * * * * * *
3529821 CCCAATCTTGAAAAGAGTGGAGAC-TGTTATGAGAATCGATACTTGTCTTTTTTAAAGGAGGAAC
311 CCCAATCTTGAAAAGAATGGAGACTTGTCA--AGAATCGATGCTTGTCATATTTAAGGGATGAA-
* * * *
3529885 TTTGATTTTAAGGAAAATTGGGCAAAGAAAGGATTTCCAGGCAAAAAAAGTCATCAATATCATTT
373 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTT
*
3529950 ATCCTAATGAGGAGAATGTGTTTACAGTGCCTAAT
438 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* * * *
3529985 CACAAAACGAATGAAGATCATTACTCGAATCCATGTTTGTTTCATTTGAGGCACGAACTT-GCTC
1 CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG-AC
* * *
3530049 TTTACAAAATTTGGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCATCAATATCGTGTATCCTT
65 TTTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCATGTATCCTT
* * * *
3530114 TTGAGAAGACTATGTTTATGGTGCGTAATCCTGAAAAGAGTGGGGATTAGCATGACTATTCATGT
130 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGT
* * *
3530179 TTGTCC-TATTTAAGAGATAAACTTTGATTCTATCAAAAACAGTGAAAAGAAAACCTTTTCTTG
195 TTG-CCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAACATTTTCTTG
3530242 TGTGATGACA
Statistics
Matches: 1860, Mismatches: 238, Indels: 124
0.84 0.11 0.06
Matches are distributed among these distances:
461 2 0.00
462 7 0.00
463 146 0.08
464 102 0.05
467 2 0.00
468 1 0.00
471 2 0.00
472 1 0.00
474 2 0.00
475 850 0.46
476 338 0.18
477 112 0.06
478 35 0.02
479 1 0.00
480 2 0.00
481 1 0.00
482 2 0.00
484 1 0.00
489 154 0.08
490 95 0.05
491 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (472 bp):
CACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
TTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCATGTATCCTTA
TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
TGCCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAACATTTTCTTGCGA
CACCAAAGCATCAATGTTATGTATCCTAATGAAGGAATGTGTTCTTGGCTCCCAATCTTGAAAAG
AATGGAGACTTGTCAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTGATTTTAAGGAAAAT
AGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
TGTTTATAGTGCCTAAT
Found at i:3531290 original size:71 final size:71
Alignment explanation
Indices: 3531209--3531346 Score: 240
Period size: 71 Copynumber: 1.9 Consensus size: 71
3531199 CCCTCGTTAT
* * *
3531209 TGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTTGTCTTCAATGGACCTTCCTTGGTTTTCAT
1 TGGTCCTTGAAACCCTTCCAACGCCTTCAGGTCATTGTATTCAATGGACCTTCCTTGGTTTTCAT
3531274 CATCAG
66 CATCAG
*
3531280 TGGTCCTTGAAACCCTTCCAATGCCTTCAGGTCATTGTATTCAATGGACCTTCCTTGGTTTTCAT
1 TGGTCCTTGAAACCCTTCCAACGCCTTCAGGTCATTGTATTCAATGGACCTTCCTTGGTTTTCAT
3531345 CA
66 CA
3531347 ACCCCTCCTT
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.38
Consensus pattern (71 bp):
TGGTCCTTGAAACCCTTCCAACGCCTTCAGGTCATTGTATTCAATGGACCTTCCTTGGTTTTCAT
CATCAG
Found at i:3535451 original size:12 final size:11
Alignment explanation
Indices: 3535429--3535546 Score: 72
Period size: 12 Copynumber: 10.9 Consensus size: 11
3535419 AGAGAAAGAA
*
3535429 GAGAGAGGAGG
1 GAGATAGGAGG
3535440 GATGATAGGAGG
1 GA-GATAGGAGG
*
3535452 AGAGACAGGA--
1 -GAGATAGGAGG
*
3535462 GAGATAGTA--
1 GAGATAGGAGG
3535471 GAGATAGGAGG
1 GAGATAGGAGG
3535482 GATGATAGGAGG
1 GA-GATAGGAGG
*
3535494 AGAGACAGGA--
1 -GAGATAGGAGG
*
3535504 GAGATAGTA--
1 GAGATAGGAGG
3535513 GAGATAGGAGG
1 GAGATAGGAGG
3535524 GATGATAGGAGG
1 GA-GATAGGAGG
*
3535536 AGAGACAGGAG
1 -GAGATAGGAG
3535547 AGATAATAGA
Statistics
Matches: 87, Mismatches: 10, Indels: 19
0.75 0.09 0.16
Matches are distributed among these distances:
9 30 0.34
11 6 0.07
12 45 0.52
13 6 0.07
ACGTcount: A:0.40, C:0.03, G:0.47, T:0.10
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:3535463 original size:9 final size:9
Alignment explanation
Indices: 3535449--3535551 Score: 65
Period size: 9 Copynumber: 12.1 Consensus size: 9
3535439 GGATGATAGG
*
3535449 AGGAGAGAC
1 AGGAGAGAT
3535458 AGGAGAGAT
1 AGGAGAGAT
*
3535467 AGTAGAGAT
1 AGGAGAGAT
*
3535476 AGGAGGGAT
1 AGGAGAGAT
* *
3535485 --GATAG-G
1 AGGAGAGAT
*
3535491 AGGAGAGAC
1 AGGAGAGAT
3535500 AGGAGAGAT
1 AGGAGAGAT
*
3535509 AGTAGAGAT
1 AGGAGAGAT
*
3535518 AGGAGGGAT
1 AGGAGAGAT
* *
3535527 --GATAG-G
1 AGGAGAGAT
*
3535533 AGGAGAGAC
1 AGGAGAGAT
3535542 AGGAGAGAT
1 AGGAGAGAT
3535551 A
1 A
3535552 ATAGAGAGAG
Statistics
Matches: 69, Mismatches: 19, Indels: 12
0.69 0.19 0.12
Matches are distributed among these distances:
7 6 0.09
8 8 0.12
9 55 0.80
ACGTcount: A:0.42, C:0.03, G:0.45, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:3535479 original size:18 final size:18
Alignment explanation
Indices: 3535452--3535564 Score: 64
Period size: 18 Copynumber: 5.6 Consensus size: 18
3535442 TGATAGGAGG
3535452 AGAGACAGGAGAGATAGT
1 AGAGACAGGAGAGATAGT
* *
3535470 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGA--GA-GAT---AGT
3535494 AGAGACAGGAGAGATAGT
1 AGAGACAGGAGAGATAGT
* *
3535512 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGA--GA-GAT---AGT
*
3535536 AGAGACAGGAGAGATAAT
1 AGAGACAGGAGAGATAGT
*
3535554 AGAGAGAGGAG
1 AGAGACAGGAG
3535565 GGATGACAGG
Statistics
Matches: 73, Mismatches: 10, Indels: 24
0.68 0.09 0.22
Matches are distributed among these distances:
18 31 0.42
20 4 0.05
21 12 0.16
22 4 0.05
24 22 0.30
ACGTcount: A:0.42, C:0.03, G:0.44, T:0.11
Consensus pattern (18 bp):
AGAGACAGGAGAGATAGT
Found at i:3535480 original size:42 final size:42
Alignment explanation
Indices: 3535419--3535579 Score: 268
Period size: 42 Copynumber: 3.8 Consensus size: 42
3535409 TAGCCCTCAA
* *
3535419 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3535461 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
3535503 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
3535545 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
3535580 GAGAGAAGAA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 113 1.00
ACGTcount: A:0.42, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:3543978 original size:42 final size:42
Alignment explanation
Indices: 3543923--3544041 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3543913 TTCTTCTCTC
* *
3543923 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3543965 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3544007 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3544042 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3543982 original size:12 final size:11
Alignment explanation
Indices: 3543956--3544031 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3543946 TCTATTATCT
*
3543956 CTCCTGTCTCTC
1 CTCCTATCTC-C
3543968 CTCCTATCATCC
1 CTCCTATC-TCC
3543980 CTCCTATCT--
1 CTCCTATCTCC
*
3543989 CTACTATCT--
1 CTCCTATCTCC
*
3543998 CTCCTGTCTCTC
1 CTCCTATCTC-C
3544010 CTCCTATCATCC
1 CTCCTATC-TCC
*
3544022 CTCCTCTCTC
1 CTCCTATCTC
3544032 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:3543983 original size:24 final size:24
Alignment explanation
Indices: 3543947--3544032 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3543937 CCTCCTCTCT
* *
3543947 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3543971 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
3543992 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3544013 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3544033 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3544007 original size:18 final size:18
Alignment explanation
Indices: 3543938--3544008 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3543928 CCTGTCATCC
* *
3543938 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
3543956 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
3543978 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
3543998 CTCCTGTCTCT
1 CTCCTGTCTCT
3544009 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3545773 original size:12 final size:11
Alignment explanation
Indices: 3545756--3545820 Score: 66
Period size: 12 Copynumber: 6.0 Consensus size: 11
3545746 CTTCTCTCCT
3545756 CCTCCTATCATC
1 CCTCCTATC-TC
3545768 CCTCCTATCT-
1 CCTCCTATCTC
*
3545778 -CTACTATCT-
1 CCTCCTATCTC
3545787 -CTCCTATCTC
1 CCTCCTATCTC
3545797 TCCTCCTATCATC
1 -CCTCCTATC-TC
3545810 CCTCCTATCTC
1 CCTCCTATCTC
3545821 TTCTTTCTCT
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
9 16 0.34
11 3 0.06
12 26 0.55
13 2 0.04
ACGTcount: A:0.14, C:0.48, G:0.00, T:0.38
Consensus pattern (11 bp):
CCTCCTATCTC
Found at i:3545798 original size:9 final size:9
Alignment explanation
Indices: 3545769--3545800 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
3545759 CCTATCATCC
3545769 CTCCTATCT
1 CTCCTATCT
*
3545778 CTACTATCT
1 CTCCTATCT
3545787 CTCCTATCT
1 CTCCTATCT
3545796 CTCCT
1 CTCCT
3545801 CCTATCATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (9 bp):
CTCCTATCT
Found at i:3549041 original size:738 final size:734
Alignment explanation
Indices: 3547614--3549044 Score: 1901
Period size: 738 Copynumber: 1.9 Consensus size: 734
3547604 AAAGAAAACT
* * * * * * * *
3547614 ATCAATATCATTTATCTTAATGCGGAGAATGTGTTTGTTGTGCCTAACCATAAAATGAATGAAGA
1 ATCAATATCATTTATCTGAATGAGGAGAATGTGTTTATAGGGCCAAACAATAAAATGAAGGAAGA
* * *
3547679 TCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACTAATTTACTCTTTTCGAAAATTGGTGGG
66 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTTCGAAAATTGGTGGG
* * * *
3547744 AAGAAAGCCTTTCTTGCAAAACCAAAGCGTCAATATCATGTATCCTTACGATAAGACTATGTTTA
131 AAGAAAGCATTTCTTACAAAACCAAAGCATCAATA-CATGTATCCTTACGAGAAGACTATGTTTA
* * * *
3547809 TGGTGCCTAATCCTAAAAAGAATGGGGATTAATATGACTATTCATGTTTGTCTTATTTAAGAAAT
195 TGGAGCCTAA--CTAAAAAGAATAGGGATTAATATGACAATTCATGTTTGTCTAATTTAAGAAAT
* * * * *
3547874 AACTTTGATTCTTTCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACTAAAGCATTAATGTC
258 AACTTTGATTCTATAAAAAACGGTGGAAAGAAAACCTTTTCTTACGACACCAAAGCATGAATGTC
* * * * * *
3547939 ATCTATCCTAATGAAGGGAATGTGTTCTACATTCCTAATCTTAAAAAGAGTGGAGACTATTACGA
323 ATCTATCCTAATAAAGGGAATGTGTTCTACACTCCCAATCTTAAAAAGAATAGAGACTATTACAA
* * * * *
3548004 GAAGTGATGCTTGTCTTTTTTAAAGGAGGGACTTTGATTTTAAGGAGAATTGGGCAAAGAAAAGA
388 GAAGTGATGCTTGTCATATTTAAAGGAGGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * *
3548069 TTTCCAAGCTAAAGAAAATCATCAATATCATTTATCCTATTGAAGACAATGTGTTTATAGTTCTT
453 TTTCCAAGCAAAAGAAAATCATCAATATCATTCATCCTAATGAAGACAATGAGTTTATAGTTCTT
* *
3548134 AATCACAAAATGAAAGAAGATTACTATTAGAATCCATGTTTGTCTTGTTTGGGGCACGAACTTAG
518 AATCACAAAATGAAAGAAGATCACTATTAGAATCCATGTTTGTCTTATTTGGGGCACGAACTTAG
* *
3548199 ACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGGATCAATATGGTGCATCC
583 ACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACAAAAGGATCAATATCGTGCATCC
*
3548264 TTATGAGAAAACTATGTTTATGGAGGCTAATCCTGAAAAGAATCCGTGGTTATGGTGGGAAGAAA
648 TTATGAGAAAACTATGTTTATGGAGCCTAATCCTGAAAAGAATCCGTGGTTATGGTGGGAAGAAA
3548329 GCCTTACTTGCGAAACCAAAGC
713 GCCTTACTTGCGAAACCAAAGC
* **
3548351 ATCAATATCATTTAT-TGATATGAGGAGAATGTGTTTATAGGGCCAAATAATAAGTTGAAGGAAG
1 ATCAATATCATTTATCTGA-ATGAGGAGAATGTGTTTATAGGGCCAAACAATAAAATGAAGGAAG
* *
3548415 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTTTTTTCTAAAATTGGTGA
65 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTTCGAAAATTGGTG-
* * * *
3548480 GAAGAAAGGAAGCATTTCTTACGAAACCAAAGCATCAATA-ATGTGCATCCTTATGCGAAGACTA
129 G--G-AAGAAAGCATTTCTTACAAAACCAAAGCATCAATACATGT--ATCCTTACGAGAAGACTA
* * * *
3548544 TGTTTATGGAG-GTGA-TGAAAAGAATAGGGATTAGTATGACAATTCATGTTTGTCTAATTTAAG
189 TGTTTATGGAGCCTAACTAAAAAGAATAGGGATTAATATGACAATTCATGTTTGTCTAATTTAAG
* *
3548607 AGACA-AACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTATGACACCAAAGCATG
254 A-A-ATAACTTTGATTCTATAAAAAACGGTGGAAAGAAAACCTTTTCTTACGACACCAAAGCATG
* * *** *
3548671 AATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGGCTCCCAATCTTGAAAAGAATAGAGACTC
317 AATGTCATCTATCCTAATAAAGGGAATGTGTTCTACACTCCCAATCTTAAAAAGAATAGAGACT-
* * * *
3548736 CA-T-CAAGAA-TCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA
381 -ATTACAAGAAGT-GATGCTTGTCATATTTAAAGGAGGAACTTTGATTTTAAGGAAAATAGGGCA
* * *
3548798 AAGAAAATG-TTTCCATGCAAAAGAAAATCATCAATATCATTCATCCTAATGAGGAGAATGAGTT
444 AAGAAAA-GATTTCCAAGCAAAAGAAAATCATCAATATCATTCATCCTAATGAAGACAATGAGTT
* * *
3548862 TATAGTTCTTAATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTTATTTGTGGC
508 TATAGTTCTTAATCACAAAATGAAAGAAGATCACTATTAGAATCCATGTTTGTCTTATTTGGGGC
* * **
3548927 ATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTTTTGTGAAACAAAAGCG-TCAAT
573 ACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACAAAAG-GATCAAT
* * *
3548991 ATCGTGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAAT
637 ATCGTGCATCCTTATGAGAAAACTATGTTTATGGAGCCTAATCCTGAAAAGAAT
3549045 GGGGATAAGT
Statistics
Matches: 598, Mismatches: 82, Indels: 27
0.85 0.12 0.04
Matches are distributed among these distances:
736 2 0.00
737 154 0.26
738 375 0.63
739 8 0.01
740 4 0.01
741 55 0.09
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (734 bp):
ATCAATATCATTTATCTGAATGAGGAGAATGTGTTTATAGGGCCAAACAATAAAATGAAGGAAGA
TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTTCGAAAATTGGTGGG
AAGAAAGCATTTCTTACAAAACCAAAGCATCAATACATGTATCCTTACGAGAAGACTATGTTTAT
GGAGCCTAACTAAAAAGAATAGGGATTAATATGACAATTCATGTTTGTCTAATTTAAGAAATAAC
TTTGATTCTATAAAAAACGGTGGAAAGAAAACCTTTTCTTACGACACCAAAGCATGAATGTCATC
TATCCTAATAAAGGGAATGTGTTCTACACTCCCAATCTTAAAAAGAATAGAGACTATTACAAGAA
GTGATGCTTGTCATATTTAAAGGAGGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
CCAAGCAAAAGAAAATCATCAATATCATTCATCCTAATGAAGACAATGAGTTTATAGTTCTTAAT
CACAAAATGAAAGAAGATCACTATTAGAATCCATGTTTGTCTTATTTGGGGCACGAACTTAGACT
TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACAAAAGGATCAATATCGTGCATCCTTA
TGAGAAAACTATGTTTATGGAGCCTAATCCTGAAAAGAATCCGTGGTTATGGTGGGAAGAAAGCC
TTACTTGCGAAACCAAAGC
Found at i:3549749 original size:475 final size:476
Alignment explanation
Indices: 3548350--3553669 Score: 6581
Period size: 476 Copynumber: 11.2 Consensus size: 476
3548340 GAAACCAAAG
* * * * ** *
3548350 CATCAATATCATTTAT--TGATATGAGGAGAATGTGTTTATAGGGCCAAATAATAAGTTGAAGGA
1 CATCAATATCATTTATCCT-A-ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
*** * *
3548413 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTTTTTTCTAAAATTGGT
64 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * * * * *
3548478 GAGAAGAAAGGAAGCATTTCTTACGAAACCAAAGCATCAATAAT-GTGCATCCTTATGCGAAGAC
129 G-G--G-AAGAAAGCCTTCCTTGCGAAACCAAAGCATCAAT-ATCGTGTATCCTTATGAGAAGAC
* * * * * *
3548542 TATGTTTATGGAG-GTGA---TGAAAAGAATAGGGATTAGTATGACAATTCATGTTTGTCTAATT
189 TATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * *
3548603 TAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAACCTTTTCTTATGACACCAAAGC
254 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGC
* * * *
3548668 ATGAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGGCTCCCAATCTTGAAAAGAATAGAGA
319 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGA
** * * *
3548733 CT-CCATCAAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGC
384 CTGTTAT-GAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGC
3548797 AAAGAAAATG-TTTCCATGCAAAAGAAAAT
448 AAAGAAAA-GATTTCCATGCAAAAGAAAAT
* * * *
3548826 CATCAATATCATTCATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
3548891 ATCATTATTAGAATCCATGTTTGTCTTATTTGTGGCATGAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
** * * * *
3548956 GAAGAAAGCCTTTTTTGTGAAACAAAAGCGTCAATATCGTGTATCCTTATGAGAAAACTATGTTT
131 GAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* * * * * * *
3549021 ATGGTGCCTAATCTTGAAAAGAATGGGGATAAGTGTGACAATTCACGTTTGCCTTATTTAAGTGA
196 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* *** **
3549086 GAAACTTTGATTCTATCAAAAAAAATGGAAAGAAAACCTTTT-TTCCGACACC--A--ATC----
261 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATG
* * *
3549142 -CA--TATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTGGAGACTATTAT
326 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTGTTAT
* * * * * * *
3549204 GAGATTCGACGCTTGTCTTTTTTAAGGGATGAACTTTGATTTTATGGAAAATTGGGCATAGAAAA
391 GAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
*
3549269 GATTTCCATGCTAAAGAAAAT
456 GATTTCCATGCAAAAGAAAAT
**
3549290 CATCAATATCATTTATCCTAATGAGGAGAATGCATTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* *
3549355 ATCATTACTAGAATCCATGTTTGCCTCATTTGAGGCAC-AGACTTA-ACTTTACAAAAATTGGTA
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA-ACTTAGACTTTACAAAAATTGGTG
* * *
3549418 CGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATAAGAAGACGATGTT
130 GGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTT
* * * * *
3549483 TACGGTGCCTATTCCTGAAAAGAATGGGGATTAGTATAACTATTCATGTATGTCTTGTTTAAGAG
195 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * *
3549548 ACAAGCGTTGATTCTATCAAAAACGATGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAAT
260 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAAT
* * * * * * *
3549613 GCCTTCTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCATTCTTGAAAAGAGTGGAGACTGTTA
325 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * * *
3549678 TGAGAATCGATGCTTGTCATTTTTAAAGGAGGAACTTTGATTTTAAGGAAAATTGGGCAAAGAAA
390 TGAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* * *
3549743 AGATTTCTAGGCTAAAGAAAAT
455 AGATTTCCATGCAAAAGAAAAT
* * *
3549765 CATCAATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAACCACAAAATGAATAAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * * **
3549830 ATCATTACTAGAATCCATGTTTGTCTTATTTAACGTACGAACATACTCTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * *
3549895 GAAGAAAGCCTTCCTAGTGAAACCAAAGCGTCAATATTGTGTATCCTTATGAGTAGACAATGTAT
131 GAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* * *
3549960 ATGGCGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTATTTAAGAGA
196 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* *
3550025 CAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATG
261 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATG
* * * * *
3550090 TCATGTATCCTGATGAAGGCAAAT-TGTTCTTGGCTCCCAATCTAGAAAAGAATAGAGATTGTTA
326 TCATGTATCCTAATGAAGG-GAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * *
3550154 TGAGAATCGATGCTTGTCATATTTACGGGATGAACTTTAAATTTAAGGAAAATAGGGCAAAGAAA
390 TGAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
*
3550219 AGATTTCCATGCTAAAGAAAAT
455 AGATTTCCATGCAAAAGAAAAT
* * *
3550241 CATCAATATCATTAATCCTAATGAGGAGAATAT-TTTCATAGTGCCTAATCATAAAATGAATGAA
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTT-ATAGTGCCTAATCACAAAATGAATGAA
* * * * *
3550305 GATCATTATTATAATCCATGTCTATCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
65 GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * * * * * *
3550370 CGAAGAAAGCCTTTCTTACGAAACTAGAGCATCAACATCATGTATCCTTATGAGAAGACTATGTT
130 GGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTT
* * * *
3550435 TATGGTGCCTAATCCTGAAAAGAATGGTGATTAGTGTCACTATTCATGTTTGCCTTATTTAAGAG
195 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * * *
3550500 ATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTGCGACA-CAAAGCATCAAT
260 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAAT
* * * * * * *
3550564 GTTAGGTATCCTAAAGAAGAGATTGTGTTTTTAGCTCCCAATCTTGAAAAGAATGGAGACTATGT
325 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGAC--TGT
* * *
3550629 CA--AGAATAGATGCTTGTCATATTTAGGGGATGAA-TATTGATTTTAAGGAAAATAGGGCAAAG
388 TATGAGAATCGATGCTTGTCATATTTAAGGGATGAACT-TTGATTTTAAGGAAAATAGGGCAAAG
3550691 AAAAGATTTCCATGCAAAAGAAAAT
452 AAAAGATTTCCATGCAAAAGAAAAT
* * * *
3550716 CATCAATATCATTTATCCTAATAAGGAGAATATGTTCATAGTGCCTACTCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * ** * * *
3550781 ATCATTACTAGAATCTATGTTTATCTCATTTGAGAAACGAACTTAGACTTAACAAAAATTTGTGT
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* *
3550846 GAAGAAAGCCTTCTTTGCGAAACCAAGGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
131 GAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* * * * * *
3550911 ATGGTTCCTAATCCTGAAAAGAATGGGGATTAGTATCACTATTTATGTTTGCCTTATTTAACATA
196 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
** *
3550976 CAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAATATTTTCTTGCGACACCAAAGCATCAATG
261 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATG
** *
3551040 TCATGTATCCTAATGAATAGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTACGTC
326 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACT--GTT
* * *
3551105 A--AGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGTAAAGAA
389 ATGAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAA
*
3551168 AAGATTTCCATACAAAAGAAAAT
454 AAGATTTCCATGCAAAAGAAAAT
* * * * *
3551191 CATCAGTATCATTTATCTTAATGAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAA
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * **
3551256 ATCATTACAAGAATCCTTGTTTATCTTGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
** * * * * * *
3551321 GAAGAAAGCCTTTATTGTGAAACCAAAGCATCAATATGGTGCATCCTTTTGAGTAGACTATGTAT
131 GAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* * * *
3551386 ATGGTGCCTAATCTCTTGAAAAGAATAGGGACTATTATGACTATTCATATTTGTCTTATTTAAGA
196 ATGGTGCCTAATC-C-TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
** * * * *
3551451 GACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCATTTGTTGTGACACTAAAGCATCAA
259 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAA
* * * * * * *
3551516 TGTCATGTATCATAATAAACGGATTGTGTTCTTGG-TTCCAGATCTTGAAAAGAATCGAGATTGT
324 TGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCA-ATCTTGAAAAGAATGGAGACTGT
** * * *
3551580 TGCGAGAATCGATGCTTGTCAGATTAAAGGGATTAACTTTGATTTTAAGGAAAATAGGGCAAAGA
388 TATGAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
*
3551645 AAAGATTTCCATGCAAAATAAAAT
453 AAAGATTTCCATGCAAAAGAAAAT
* * * * * *
3551669 CATCAATATCATTTGTCCTAATAAAGAGAATGTGTTTATAGTACCTAGTCACAAAATGAACGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * * *
3551734 ATAACTACTAGAATCAATGTTTGTCTCATTTGAGGAACGAACTTACACTTTCCAAAAATTGGTGG
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* *
3551799 GAAGAAAGCCTTCTTTGCGAAACCAAAGCATCAATATAC-TGTATCCTTATGGGAAGAC------
131 GAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATAT-CGTGTATCCTTATGAGAAGACTATGTT
* * * *
3551857 TAT-GTGCCAAATCCTGAAAAGAAAGGGGATTAGTATGATTATTCATGTTTGTTTTATTTAAGAG
195 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* * *
3551921 ACAAACTTTGATTCTATCAAAAACAG-CGAAAAATAAACCTTTTCTTGTGACACCAAAGCATCAA
260 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGA-AAACCTTTTCTTGTGACACCAAAGCATCAA
* * * * * * *
3551985 TGTCATCTATCTTAATGAAAGGAATGTATTCTTGGTTCCCAATCATGAAAAGAGT-GAGGACTGT
324 TGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGA-GACTGT
* * * * * * * *
3552049 TTTGAGAATTGATTCTTGTCTTTTTTAAGGGAAGAA-TATTGATTTTAAGGAAAATTGGGCAAAC
388 TATGAGAATCGATGCTTGTCATATTTAAGGGATGAACT-TTGATTTTAAGGAAAATAGGGCAAAG
* * * *
3552113 AAAAGACTTCAAGGCTAAAGAAAAT
452 AAAAGATTTCCATGCAAAAGAAAAT
* * *
3552138 CATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTTCCTAACCACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * *
3552203 ATCATTACTAGAATCAATGTTTGTCTCATTTAAGGCACGAACTTA-CCTTTTATAAAAATTAGG-
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTTACAAAAATT-GGT
* *
3552266 GGGAAGAAAGCCTTCCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGTAGACTATGT
129 GGGAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGT
* * * * *
3552331 TTACGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGACTATTCATTTTTGCCTTATTTAAGA
194 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* * * *
3552396 GACAAGCTTTGATTCTATCAAAAACGGTGGAAAGCAATCCTTTTCTTGCGACACCAAAGCATCAA
259 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAA
* * * *
3552461 TGTCAAGTATCCTAATGAAGAGATTGTGTTCTTAGCTCCCAATCTTGAAAAGAATGGAGACTACG
324 TGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACT--G
* * * *
3552526 TCA--AGAATTGATGCTTGTCAAATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
387 TTATGAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
3552589 AAAAGATTTCCATGCAAAAGAAAAT
452 AAAAGATTTCCATGCAAAAGAAAAT
* * * * * *
3552614 CATCAATATCATTTATCCTTATAAGGAGAATGTGTTCACAGTGCCTACTCACAAAATGAATGAGG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* *
3552679 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGAGT
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
*
3552744 GAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTT
131 GAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
* ** **
3552809 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATCACTATTTGTGTTTACCTTATTTAAGAG-
196 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * *
3552873 -AAACTTTGATTC-ATCAAAAGCGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATG
261 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATG
* * ** ***
3552936 TCAAG-ATCCTAATGAAGAGAATGCATTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTACGAT
326 TCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTGTTAT
* * * * *
3553000 GAGAATCAATGCTTGCCATTTTTAAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAAAGAAAA
391 GAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
3553065 GATTTCCATGCAAAAGAAAAT
456 GATTTCCATGCAAAAGAAAAT
* ** * * * *
3553086 CATCAATATCATTTACCCTAACAAAGAGAATGTGTTCATAGTGCCTACTTACAAAATGAATGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* * * * *
3553151 ATCATTTCTGGAATTCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGC
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
* * * * * * *
3553216 GAAGAAAACCTT-TTTGGTGAAACCAAATCATCAATGTCATGTATCCTTATGAGAAGACAATGTT
131 GAAGAAAGCCTTCCTT-GCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTT
* * * *
3553280 TAGGGTGCCTAATCCTTAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCATATTTAAGAG
195 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* **
3553345 ACAAACTTTGATTCTATCAAAAACAGTGGAAAG-AAACCTTTTCTTGTGACACTGAAGCATCAAT
260 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAAT
* * * * * * * *
3553409 GTCATCTATCCTAGTGAAGGGATTGTGTTCTTAGCTCCAAATCTTGAAAAGAGTGGAGGCTATTA
325 GTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTGTTA
* * * * * * * * *
3553474 TGAGAATCAATGCTTGTCTTTTTTAAAGGAGGAACTTTGATTCTGAGGAAAATTGGGTAAAGAAA
390 TGAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
*
3553539 AGATTTCCATGCTAAAGAAAAT
455 AGATTTCCATGCAAAAGAAAAT
* *
3553561 TATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAG
1 CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
* *
3553626 ATCATTACCAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
66 ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
3553670 GCCTTCCTTG
Statistics
Matches: 4188, Mismatches: 586, Indels: 141
0.85 0.12 0.03
Matches are distributed among these distances:
463 166 0.04
464 229 0.05
465 2 0.00
466 3 0.00
468 13 0.00
469 374 0.09
470 8 0.00
471 15 0.00
472 417 0.10
473 58 0.01
474 75 0.02
475 1198 0.29
476 1227 0.29
477 91 0.02
478 312 0.07
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGG
GAAGAAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATG
TCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTGTTAT
GAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
GATTTCCATGCAAAAGAAAAT
Found at i:3550559 original size:158 final size:158
Alignment explanation
Indices: 3549432--3553421 Score: 877
Period size: 159 Copynumber: 25.2 Consensus size: 158
3549422 GAAAGCCTTC
* * * * * *
3549432 CTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATAAGAAGACGATGTTTACGGTGCCTATTC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * * *
3549497 CTGAAAAGAATGGGGATTAGTATAACTATTCATGTATGTCTTGTTTAAGAGA-CAAGCGTTGATT
66 CTGAAAAGAATGGAGATTAGTATCACTATTCATGTTTGTCTTATTTAAGAGATGAA-CTTTGATT
* * * *
3549561 CTATCAAAAACGATGGAAAGAAAACCTTTT
130 -TAACAAAAATGGTGGAAAGAAAACATTTT
* * ** * * * * * * * * *
3549591 CTTGTGACACCAAAGCATCAATGCCTTCTATCCTAATGA-AGGGAATGTGTTCT-TAGTTCCCAT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTT-TATGGTGCCTAA
* * * * * * * *
3549654 TCTTGAAAAGAGTGGAGACT-GTTATGA-GAATCGATGCTTGTCATT-TTTAA-AGGAGGAACTT
64 TCCTGAAAAGAATGGAGATTAG-TATCACTATTC-ATGTTTGTC-TTATTTAAGA-GATGAACTT
* * * *
3549715 TGATTTTAAGGAAAATTGG-GCAAAGAAAAGA-TTT
125 TGA-TTTAA-CAAAAATGGTGGAAAGAAAACATTTT
* * ** * * * * *
3549749 CTAGGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAC-GTGTTTATAGTGCCTAA
1 CT-TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAG-ACTATGTTTATGGTGCCTAA
** ** * * ** * * * *
3549813 -CCACAAAATGAATAAAGATCATTA-CTAGAATCCATGTTTGTCTTATTTAACG-TACGAAC-AT
64 TCCTGAAAA-GAATGGAGATTAGTATC-ACTATTCATGTTTGTCTTATTTAA-GAGATGAACTTT
* * * * *
3549874 -ACTCTTTACAAAAATTGGTGGGAAGAAAGC-CTTC
126 GA-T-TTAACAAAAA-TGGTGGAAAGAAAACATTTT
* * * ** * * * * *
3549908 CTAGTGAAACCAAAGCGTCAATATTGTGTATCCTTATGAGTAGACAATGTATATGGCGCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * **
3549973 TTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTGATTC
66 CTGAAAAGAATGGAGATTAGTATCACTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATT-
* *
3550038 TATA-AAAAACGGTGGAAAGAAAACCTTTT
130 TA-ACAAAAATGGTGGAAAGAAAACATTTT
* * *
3550067 CTTGCGACACCAAAGCATCAATGTCATGTATCCTGATGAAGGCAA-A-T-TGTTCT-TGGCT-CC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-A-G-AAGACTATGTT-TATGG-TGCC
* * * * * * * * *
3550127 CAAT-CTAGAAAAGAATAGAGATT-GTTATGA-GAATCGATGCTTGTCATATTTACGGGATGAAC
61 TAATCCT-GAAAAGAATGGAGATTAG-TATCACTATTC-ATGTTTGTCTTATTTAAGAGATGAAC
* ** * * *
3550189 TTTAAATTTAAGGAAAATAGG-GCAAAGAAAAGATTTC
123 TTT-GATTTAACAAAAAT-GGTGGAAAGAAAACATTTT
* * ** * * * *
3550226 CATGCTAAAGAAAATCATCAATATCAT-TAATCCTAATGAGGAGAATAT-TTTCATAGTGCCTAA
1 CTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAGAAGACTATGTTT-ATGGTGCCTAA
* * * * * * * * * * *
3550289 TCAT-AAAATGAATGAAGATCATTATTA-TAATCCATGTCTATCTCATTTGAG-GCATGAACTTA
64 TCCTGAAAA-GAATGGAGATTAGTATCACT-ATTCATGTTTGTCTTATTTAAGAG-ATGAACTTT
* *
3550351 GACTTT-ACAAAAATTGGTGCG-AAGAAAGC-CTTT
126 GA-TTTAACAAAAA-TGGTG-GAAAGAAAACATTTT
* * * * *
3550384 CTTACGAAACTAGAGCATCAACATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * *
3550449 CTGAAAAGAATGGTGATTAGTGTCACTATTCATGTTTGCCTTATTTAAGAGATAAACTTTGATTC
66 CTGAAAAGAATGGAGATTAGTATCACTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATT-
*
3550514 TATCAAAAATGGTGGAAAGAAAACATTTT
130 TAACAAAAATGGTGGAAAGAAAACATTTT
* * * * * * * * * *
3550543 CTTGCGACA-CAAAGCATCAATGTTAGGTATCCTAAAGA-AGAGATTGTGTTTTTAGCT-CCCAA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTAT-GGTGCCTAA
* * * ** ** * * * *
3550605 TCTTGAAAAGAATGGAGACTA-TGTCAAGAATAGATGCTTGTCATATTTAGGGGATGAA-TATTG
64 TCCTGAAAAGAATGGAGATTAGTATC-ACTATTCATGTTTGTCTTATTTAAGAGATGAACT-TTG
** * * *
3550668 ATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTC
127 A-TTTAACAAAAAT-GGTGGAAAGAAAACATTTT
* * ** * * * * * * * *
3550701 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTCATAGTGCCTACTC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * * * * * *
3550766 AC--AAAATGAATGAAGATCA-T-T-ACTAGAATCTATGTTTATCTCATTTGAGAAACGAACTTA
66 -CTGAAAA-GAATGGAGATTAGTATCACT--ATTC-ATGTTTGTCTTATTTAAGAGATGAACTTT
* * * * *
3550826 GACTTAACAAAAATTTGTGTG-AAGAAAGCCTTCT
126 GATTTAACAAAAA-TGGTG-GAAAGAAAACATTTT
* * * *
3550860 -TTGCGAAACCAAGGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTTCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * * **
3550924 CTGAAAAGAATGGGGATTAGTATCACTATTTATGTTTGCCTTATTTAACATACAAACTTTGATTC
66 CTGAAAAGAATGGAGATTAGTATCACTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATT-
* * *
3550989 TATCAAAAACGGTGGAAA-AAAATATTTT
130 TAACAAAAATGGTGGAAAGAAAACATTTT
* * * * *
3551017 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-ATAGAATGTGTTCT-TGGCT-CCCA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTT-TATGG-TGCCTA
* * ** * * * * *
3551079 ATCTTGAAAAGAATGGAGACTACG--TCAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTT
63 ATCCTGAAAAGAATGGAGATTA-GTATCACTATTC-ATGTTTGTCTTATTTAAGAGATGAACTTT
* * * *
3551142 GATTTTAAGGAAAATAAGGT--AAAGAAAAGATTTC
126 GA-TTTAA-CAAAA-ATGGTGGAAAGAAAACATTTT
* * * ** * * * * * * * * * *
3551176 CATACAAAAGAAAATCATCAGTATCATTTATCTTAATGAGGAGAATGTGTTTATAGTTCTTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * ** * * * * * * *
3551241 AC--AAAATGAATGAAAATCATTA-CAAGAATCCTTGTTTATCTTGTTTGAG-GCACGAACTTAG
66 -CTGAAAA-GAATGGAGATTAGTATC-ACTATTCATGTTTGTCTTATTTAAGAG-ATGAACTTTG
* * *
3551302 ACTTT-ACAAAAATTGGTGGGAAGAAAGC-CTTT
127 A-TTTAACAAAAA-TGGTGGAAAGAAAACATTTT
* * ** * ** * *
3551334 ATTGTGAAACCAAAGCATCAATATGGTGCATCCTTTTGAGTAGACTATGTATATGGTGCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * **
3551399 TCTTGAAAAGAATAGG-GACTATTATGACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGA
66 -C-TGAAAAGAAT-GGAGATTAGTATCACTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGA
* ***
3551463 TTCTATCAAAAACAATGGAAAGAAAAGCA-TTT
128 TT-TAACAAAAATGGTGGAAAGAAAA-CATTTT
* * * * * * * * *
3551495 GTTGTGACACTAAAGCATCAATGTCATGTATCATAAT-A-AACGGATTGTGTTCT-TGGTTCC-A
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--GACTATGTT-TATGGTGCCTA
* * * * * ** * * *
3551556 GATCTTGAAAAGAATCGAGATT-GT-TGCGA-GAATCGATGCTTGTCAGATTAAAGGGATTAACT
63 -ATCCTGAAAAGAATGGAGATTAGTAT-C-ACTATTC-ATGTTTGTCTTATTTAAGAGATGAACT
** * * *
3551618 TTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTC
124 TTGA-TTTAACAAAAAT-GGTGGAAAGAAAACATTTT
* * ** * * * * * * * * *
3551654 CATGCAAAATAAAATCATCAATATCATTTGTCCTAAT-AAAGAGAATGTGTTTATAGTACCTAGT
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTATGGTGCCTAAT
* * * * * * * * *
3551718 CAC--AAAATGAACGAAGATAACTA-CTA-GAATCAATGTTTGTCTCATTTGAG-GAACGAACTT
65 C-CTGAAAA-GAATGGAGATTAGTATC-ACTATTC-ATGTTTGTCTTATTTAAGAG-ATGAACTT
** * * * * *
3551778 ACACTTT-CCAAAAATTGGTGGGAAGAAAGCCTTCT
125 TGA-TTTAACAAAAA-TGGTGGAAAGAAAACATTTT
* * *
3551813 -TTGCGAAACCAAAGCATCAATAT-ACTGTATCCTTATGGGAAGAC------TAT-GTGCCAAAT
1 CTTGCGAAACCAAAGCATCAATATCA-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * * **
3551869 CCTGAAAAGAAAGGGGATTAGTATGATTATTCATGTTTGTTTTATTTAAGAGACAAACTTTGATT
65 CCTGAAAAGAATGGAGATTAGTATCACTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATT
* ** * * *
3551934 CTATCAAAAACAG-CGAAAAATAAACCTTTT
130 -TAACAAAAATGGTGGAAAGA-AAACATTTT
* * * * * * * *
3551964 CTTGTGACACCAAAGCATCAATGTCATCTATCTTAATGA-AAGGA--ATGTATTCTTGGTTCCCA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GACTATGT-TT-ATGGTGCCTA
* * * * * ** * * * *
3552026 ATCATGAAAAGAGT-GAGGACT-GTTTTGAGAATTGAT-TCTTGTCTTTTTTAAGGGAAGAA-TA
63 ATCCTGAAAAGAATGGA-GATTAG-TATCACTATTCATGT-TTGTCTTATTTAAGAGATGAACT-
* * * * * *
3552087 TTGATTTTAAGGAAAATTGG-GCAAACAAAAGA-CTT
124 TTGA-TTTAA-CAAAAATGGTGGAAAGAAAACATTTT
** * ** * * * * * *
3552122 CAAGGCTAAAGAAAATCATCAATATCATTTATCCTAATGA-AGAGAATGTGTTTATAGTTCCTAA
1 C-TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTTTATGGTGCCTAA
** * * * * *
3552186 -CCACAAAATGAATGAAGATCA-T-T-ACTAGAATCAATGTTTGTCTCATTTAAG-GCACGAACT
64 TCCTGAAAA-GAATGGAGATTAGTATCACT--ATTC-ATGTTTGTCTTATTTAAGAG-ATGAACT
*** * * * * * *
3552246 TACCTTTTATAAAAATTAGG-GGGAAGAAAGC-CTTC
124 TTGATTTAACAAAAA-T-GGTGGAAAGAAAACATTTT
* * * * *
3552281 CTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGTAGACTATGTTTACGGTGCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * *
3552346 TTGAAAAGAATAGG-GATTAGTATGACTATTCATTTTTGCCTTATTTAAGAGA-CAAGCTTTGAT
66 CTGAAAAGAAT-GGAGATTAGTATCACTATTCATGTTTGTCTTATTTAAGAGATGAA-CTTTGAT
* * * * *
3552409 TCTATCAAAAACGGTGGAAAGCAATCCTTTT
129 T-TAACAAAAATGGTGGAAAGAAAACATTTT
* * * * * * *
3552440 CTTGCGACACCAAAGCATCAATGTCAAGTATCCTAATGA-AGAGATTGTGTTCT-TAGCT-CCCA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATGTT-TAT-GGTGCCTA
* * ** * * ** * *
3552502 ATCTTGAAAAGAATGGAGACTACG--TCAAGAATTGATGCTTGTCAAATTTAAGGGATGAATTTT
63 ATCCTGAAAAGAATGGAGATTA-GTATC-ACTATTCATGTTTGTCTTATTTAAGAGATGAACTTT
** * * *
3552565 GATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTC
126 GA-TTTAACAAAAAT-GGTGGAAAGAAAACATTTT
* * ** * * * * * * * * ** *
3552599 CATGCAAAAGAAAATCATCAATATCATTTATCCTTATAAGGAGAATGTGTTCACAGTGCCTACTC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * ** * * * * *
3552664 AC--AAAATGAAT-GAGGATCATTA-CTAGAATCCATGTTTGTCTCATTTGAG-GCACGAACTTA
66 -CTGAAAA-GAATGGA-GATTAGTATC-ACTATTCATGTTTGTCTTATTTAAGAG-ATGAACTTT
* * * *
3552724 GACTTT-ACAAAAATTGGAGTG-AAGAAAGC-CTTC
126 GA-TTTAACAAAAA-TGGTG-GAAAGAAAACATTTT
*
3552757 CTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* ** ** *
3552822 CTGAAAAGAATGGGGATTAGTATCACTATTTGTGTTTACCTTATTTAAGAGA--AACTTTGATTC
66 CTGAAAAGAATGGAGATTAGTATCACTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTT
* **
3552885 ATCAAAAGCGGTGGAAAGAAAACATTTT
131 AACAAAAATGGTGGAAAGAAAACATTTT
* * *
3552913 CTTGCGACACCAAAGCATCAATGTCAAG-ATCCTAATGA-AGAGA--ATGCATTCT-TGGCT-CC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTATG--TT-TATGG-TGCC
* * * * * * * * * *
3552972 CAATCTTGAAAAGAATGGAGACTACG-ATGA-GAATCAATGCTTGCCATT-TTTAAGGGATGAAT
61 TAATCCTGAAAAGAATGGAGATTA-GTATCACTATTC-ATGTTTGTC-TTATTTAAGAGATGAAC
* ** * * *
3553034 TTTTATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTC
123 TTTGA-TTTAACAAAAAT-GGTGGAAAGAAAACATTTT
* * ** * * * * ** *
3553071 CATGCAAAAGAAAATCATCAATATCATTTACCCTAA-CA-AAGAGAATGTGTTCATAGTGCCT-A
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGT-TT-ATGGTGCCTAA
* * * * * *** * *
3553133 -CTTACAAAATGAATGAAGATCA-TTTCTGGAATTCATGTTTGTCTTATTTGAG-GCACGAACTT
64 TCCT-GAAAA-GAATGGAGATTAGTATC-ACTATTCATGTTTGTCTTATTTAAGAG-ATGAACTT
* *
3553195 AGACTTT-ACAAAAATTGGTGCG-AAGAAAACCTTTT
125 TGA-TTTAACAAAAA-TGGTG-GAAAGAAAACATTTT
* * * * * * *
3553230 -TGGTGAAACCAAATCATCAATGTCATGTATCCTTATGAGAAGACAATGTTTAGGGTGCCTAATC
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
* * * * * **
3553294 CTTAAAAGAATGGGGATTAGTATGACTATTCATGTTTTTCATATTTAAGAGACAAACTTTGATTC
66 CTGAAAAGAATGGAGATTAGTATCACTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATT-
* ** *
3553359 TATCAAAAACAGTGGAAAG-AAACCTTTT
130 TAACAAAAATGGTGGAAAGAAAACATTTT
* * ** * *
3553387 CTTGTGACACTGAAGCATCAATGTCATCTATCCTA
1 CTTGCGAAACCAAAGCATCAATATCATGTATCCTA
3553422 GTGAAGGGAT
Statistics
Matches: 2665, Mismatches: 896, Indels: 541
0.65 0.22 0.13
Matches are distributed among these distances:
150 7 0.00
151 52 0.02
152 48 0.02
153 4 0.00
154 4 0.00
155 68 0.03
156 48 0.02
157 81 0.03
158 1005 0.38
159 1146 0.43
160 130 0.05
161 70 0.03
162 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (158 bp):
CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
CTGAAAAGAATGGAGATTAGTATCACTATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTT
AACAAAAATGGTGGAAAGAAAACATTTT
Found at i:3557737 original size:13 final size:13
Alignment explanation
Indices: 3557719--3557743 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3557709 CATTATGCTT
3557719 TGTATCGATACAA
1 TGTATCGATACAA
3557732 TGTATCGATACA
1 TGTATCGATACA
3557744 TGTTTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3557756 original size:19 final size:19
Alignment explanation
Indices: 3557732--3557784 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
3557722 ATCGATACAA
**
3557732 TGTATCGATACATGTTTAT
1 TGTATCGATACATGTCAAT
* * *
3557751 TGTATCAATACGTACTCAAT
1 TGTATCGATACAT-GTCAAT
3557771 TGTATCGATACATG
1 TGTATCGATACATG
3557785 AAACTGGCAA
Statistics
Matches: 25, Mismatches: 8, Indels: 2
0.71 0.23 0.06
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATGTCAAT
Found at i:3557856 original size:33 final size:33
Alignment explanation
Indices: 3557813--3557875 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
3557803 CTAAGTGAAA
3557813 TGTATCGATACATG-GGACAATGTATCGATACAT
1 TGTATCGATACATGAGGA-AATGTATCGATACAT
* *
3557846 TGTATTGATACATGAGGAATTGTATCGATA
1 TGTATCGATACATGAGGAAATGTATCGATA
3557876 TATTATGCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 24 0.89
34 3 0.11
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33
Consensus pattern (33 bp):
TGTATCGATACATGAGGAAATGTATCGATACAT
Found at i:3559439 original size:159 final size:157
Alignment explanation
Indices: 3558800--3559512 Score: 409
Period size: 159 Copynumber: 4.5 Consensus size: 157
3558790 TGATTCTCTC
* * ** * ** *
3558800 AAAAATAGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGCATCCTAATGAA
1 AAAAATGGTGGAAAGAAAACCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAA
* *
3558865 G-GAATGTGTTCT-TGGCTCCCAATCTTGAAAAAAATGGAGACTGCGATGAGAATCAATGCTTGT
66 GAGAATGTGTT-TATGGCTCCCAATCTTGAAAAAAATGGAGACTACGATGAGAATCAATGCTTGC
*
3558928 CATATTTAAGGGATGAAATTTGATTTTGA
130 CTTATTTAAGGGATGAAATTTGATTTT-A
* * * * ** ** * *
3558957 GGAATATAGG-GCAAAGAAAA-GATTTTCAAGCAAAAGAAAATCATCAATATCATTTATCCTAAT
1 -AAAAAT-GGTGGAAAGAAAACCA-TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAAT
* * * * ** ** * * * * ** * *
3559020 AAAGAGAATGAGTTTATAGTTCTTAATC-ACAAAATGAATGAACATTATTACT-AGAATCCATGT
63 GAAGAGAATGTGTTTATGGCTCCCAATCTTGAAAA-AAATGGAGACTACGA-TGAGAATCAATGC
** * ** * * *
3559083 TTATCTTGTTCGAGGCATGAAATTAGACTTTA
126 TTGCCTTATTTAAGGGATGAAATTTGATTTTA
* * * *
3559115 CAAAAATTGGTGGGAAGAAAGCC-TTTCTTGCAAAACCAAAGCATCAATATCATATATCCTTATG
1 -AAAAA-TGGTGGAAAGAAAACCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATG
* * * * * *
3559179 -AGTAGACTATGTTTATGG-TGCCTAATCTTGAAAAAAATGGGGACTA-GAATGACTATTC-ATG
64 AAG-AGAATGTGTTTATGGCT-CCCAATCTTGAAAAAAATGGAGACTACG-ATGA-GAATCAATG
*
3559240 TTTGCCTTATTT-A-GGA-GACAAGCTTTGATTCTATA
125 CTTGCCTTATTTAAGGGATGA-AA--TTTGATT-T-TA
** * *
3559275 AAAAATGGTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAA
1 AAAAATGGTGGAAAGAAAACCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAA
* *
3559340 GGGAATGTGTTCT-TGGCTCCCAATCTTGAAAAGAATGGAGACTACGATGAGAATCAATGCTTGC
66 GAGAATGTGTT-TATGGCTCCCAATCTTGAAAAAAATGGAGACTACGATGAGAATCAATGCTTGC
* *
3559404 CATT-TTTAAGGGATGAATTTTTATTTTA
130 C-TTATTTAAGGGATGAAATTTGATTTTA
* * * * ** * *
3559432 AGGAAAATAGG-GCAGAGAAAA-GATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAA
1 A--AAAAT-GGTGGAAAGAAAACCATTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTAA
* * *
3559495 CGAGGAGAATGAGTTTAT
62 TGAAGAGAATGTGTTTAT
3559513 AGTTCTTAAT
Statistics
Matches: 405, Mismatches: 115, Indels: 69
0.69 0.20 0.12
Matches are distributed among these distances:
155 2 0.00
156 4 0.01
157 8 0.02
158 153 0.38
159 219 0.54
160 13 0.03
161 4 0.01
162 2 0.00
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (157 bp):
AAAAATGGTGGAAAGAAAACCATTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAA
GAGAATGTGTTTATGGCTCCCAATCTTGAAAAAAATGGAGACTACGATGAGAATCAATGCTTGCC
TTATTTAAGGGATGAAATTTGATTTTA
Found at i:3559548 original size:476 final size:475
Alignment explanation
Indices: 3558604--3559753 Score: 1703
Period size: 476 Copynumber: 2.4 Consensus size: 475
3558594 TGAGCTTACA
* * * * * *
3558604 ATGTTTGTCTTGTTTGAGGCATGAACTTAGACATTACAGAAACTGGTGGGAAAAAAGCCTTTCCT
1 ATGTTTGTCTTGTTTGAGGCATGAAATTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* *
3558669 GCGAAACAAAAGCATCAATAACGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTG
66 GCGAAACCAAAGCATCAATAACGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * * *
3558734 AAAAGAATGGGGATTAGTATGACTCTTCATGTTTGTCTCATGTAAGACACAAATTTTGATTCTCT
131 AAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAATTTTGATTCTAT
*
3558799 CAAAAATAGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGCCATGCATCCTAATGA
196 CAAAAATAGTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATCAATGCCATGCATCCTAATGA
* *
3558864 AGGAATGTGTTCTTGGCTCCCAATCTTGAAAAAAATGGAGACTGCGATGAGAATCAATGCTTGTC
261 AGGAATGTGTTCTTGGCTCCCAATCTTGAAAAAAATGGAGACTACGATGAGAATCAATGCTTGCC
* * * *
3558929 ATATTTAAGGGATGAAATTTGATTTTGAGGAATATAGGGCAAAGAAAAGATTTTCAAGCAAAAGA
326 ATATTTAAGGGATGAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAAA
*
3558994 AAATCATCAATATCATTTATCCTAATAAAGAGAATGAGTTTATAGTTCTTAATCACAAAATGAAT
391 AAATCATCAATATCATTTATCCTAACAAAGAGAATGAGTTTATAGTTCTTAATCACAAAATGAAT
*
3559059 GAACATTATTACTAGAATCC
456 GAACATCATTACTAGAATCC
* *
3559079 ATGTTTATCTTGTTCGAGGCATGAAATTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
1 ATGTTTGTCTTGTTTGAGGCATGAAATTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* * * * * *
3559144 GCAAAACCAAAGCATCAATATCATATATCCTTATGAGTAGACTATGTTTATGGTGCCTAATCTTG
66 GCGAAACCAAAGCATCAATAACGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * **
3559209 AAAAAAATGGGGACTAGAATGACTATTCATGTTTGCCTTATTTAGGAGACAAGCTTTGATTCTAT
131 AAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAATTTTGATTCTAT
* * * *
3559274 AAAAAATGGTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGA
196 CAAAAATAGTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATCAATGCCATGCATCCTAATGA
*
3559339 AGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTACGATGAGAATCAATGCTTGC
261 A-GGAATGTGTTCTTGGCTCCCAATCTTGAAAAAAATGGAGACTACGATGAGAATCAATGCTTGC
* * * * *
3559404 CATTTTTAAGGGATGAATTTTTATTTTAAGGAAAATAGGGCAGAGAAAAGATTTCCATGCAAAAA
325 CATATTTAAGGGATGAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAA
* * *
3559469 AAAATCATCAATATCATTTATCCTAACGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGAT
390 AAAATCATCAATATCATTTATCCTAACAAAGAGAATGAGTTTATAGTTCTTAATCACAAAATGAA
**
3559534 TGAGGATCATTACTAGAATCC
455 TGAACATCATTACTAGAATCC
* * * *
3559555 ATGTTTGTCTTGTTTGAGGCACGAATTTAGACTTTAGAAAAATTGGTGAGAAGAAAGCCTTTCTT
1 ATGTTTGTCTTGTTTGAGGCATGAAATTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* *
3559620 GCGAAACCAGAG-AGTCAATAACGTGTATCCTTCTGAGAAGACTATGTTTATGGTGCCTAATCCT
66 GCGAAACCAAAGCA-TCAATAACGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * *
3559684 -AAAAAGAAT-GGGATTGGTATGACTATTCATTTTTGTCTTATTTAATAGACAAATTTTGATTCT
130 GAAAAA-AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAATTTTGATTCT
3559747 ATCAAAA
194 ATCAAAA
3559754 TATCAATGAC
Statistics
Matches: 596, Mismatches: 76, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
475 285 0.48
476 311 0.52
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
ATGTTTGTCTTGTTTGAGGCATGAAATTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
GCGAAACCAAAGCATCAATAACGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
AAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAATTTTGATTCTAT
CAAAAATAGTGGAAAGAAAACCATTTCTTGTGACACCAAAGCATCAATGCCATGCATCCTAATGA
AGGAATGTGTTCTTGGCTCCCAATCTTGAAAAAAATGGAGACTACGATGAGAATCAATGCTTGCC
ATATTTAAGGGATGAAATTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAAGCAAAAAA
AAATCATCAATATCATTTATCCTAACAAAGAGAATGAGTTTATAGTTCTTAATCACAAAATGAAT
GAACATCATTACTAGAATCC
Found at i:3560857 original size:476 final size:476
Alignment explanation
Indices: 3559755--3562558 Score: 3488
Period size: 476 Copynumber: 5.9 Consensus size: 476
3559745 CTATCAAAAT
* * * *
3559755 ATCAATGACATGTATCCTAATGAAGGGAATGTGTTCTTGG-TCCACTATCATGAAAAGAGTGGAG
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCC-CAATCTTGAAAAGAATGGAG
* * * * * *** *
3559819 A-T-GGTTACGAGAATCGTTGCTTGTCTTTTTTGAA-GGATGAACAATGATTTTAAGGAAATTA-
65 ACTACG--ATGAGAATCGATGCTTGTCATATTT-AAGGGATGAATTTTGATTTTAAGGAAAATAG
* *
3559880 AGCGAAATAAAAGATTTGT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
127 GGC-AAAGAAAAGATTT-TCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * * * *
3559944 GTGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATCACTAGAATCCATGTTTGTCTTATTT
190 GTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * *
3560009 GAGGCACGAACTTAGACTTTACAAAAATTGGTGCGAAGAAAGCCTTTCTTGCAAAACCAAAGCAT
255 GAGGCACGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
* * * * * * ** * *
3560074 TAGTATCATGTATCCTTATGAGAAGACTAGGTCTACAGTGCCTAATCCTGAAAAGAATGGGAATT
320 CAATATCTTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATT
* * *
3560139 AGTATGGCTATTCATATTTGTCTTATTTAA-AGACAAACTTTGATTCTATCGAAACA--GT----
385 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAATGGTGGAA
3560197 --------TTTTCTTGCGACACCAAAGC
449 AGAAAACCTTTTCTTGCGACACCAAAGC
* * * *
3560217 ATCAACGTCATGTATTCTAACGAAGGGAATGTGTTCTTGGCACCCAATCTTGAAAAGAATGGAGA
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGA
* *** * * * *
3560282 TTGTTAAGAGAATAGATGCTTGTCATATTTAAAGGATGAACTTTGATTTTAAGGAAAATAGGGCA
66 CTACGATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA
*
3560347 AAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
131 AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * *
3560412 ATAGTGCCTAATCACAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCTCACTTGAGGCA
196 ATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* * ** * *
3560477 CGAACTTACACTTTAC-AAAATTGGTGGGAAGAAAGCTTTTCTTGCAAAAGAAAAGTGA-CAAGA
261 CGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAG-CATCAATA
* * *
3560540 TCTTGTATCCTTATGAGTAGACTATGTTTATGGTGCCTAATCCTGAAAAAGAATGGGGATTAGAA
325 TCTTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTA
* *
3560605 TGACTACTT-ATGTTTGTTTTATTTAGGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
389 TGACTA-TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
*
3560669 AACGTTTTCTT-CTGACACCAAAGC
453 AACCTTTTCTTGC-GACACCAAAGC
*
3560693 ATCAATGTCATGAATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGA
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGA
* * * * *
3560758 CTACGATGAGAATCGATGCTTGTTATTTTTAAGGGATGAATTTTTAATTTACGGAAAATAGGGCA
66 CTACGATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA
* *
3560823 AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTTATGAGGAGAATGAGTTT
131 AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* **
3560888 ATAGTTCTTAATCACAAAATG-ATAGAGGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGC
196 ATAGTTCTTAATCACAAAATGAAT-GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * * * * *
3560952 ATGAACTTAGACTTTACAAAAAGTGATGGGAAGAAAGCCTTTCTTGCGAAACTAAAGCGTCAATA
260 ACGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATA
* *
3561017 ACGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATT-GTTA
325 TCTTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG-TA
* * * *
3561081 TGACTATTCATGTTTGTCTTGTTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGTAAGAAA
389 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAA
3561146 ACCTTTTCTTGCGACACCAAAGC
454 ACCTTTTCTTGCGACACCAAAGC
* ** * ** *** *
3561169 ATCAATGTCATGTATCCTAAAGAAAAGAATGTGTTCCTGG-TCGAAATCTTGAAAACTTTGGGGA
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGA
* *
3561233 CTGTC-ATGAGAATCGATACTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAGGG
66 CT-ACGATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAAT-AGGG
* * * *
3561297 -AAAGAAAAGATTTCCATGCTAGAGAAAATCTTCAATATCATTTATCCTAATGAGGAGAATGTGT
129 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* *
3561361 TTATAGTTCTTAATCACAATATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
194 TTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * **
3561426 TACGAACTTACCCTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTATGAAACCAAAGCATCAAT
259 CACGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
* * * * *
3561491 ATCGTCTATCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTCCTAAAAAGAAT-GGGATTAGTA
324 ATCTTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTA
* * * *
3561555 TGACTATTCATGCTTT-TCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAATGAA
389 TGACTATTCATG-TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
3561619 AACCTTTTCTTGCGACACCAAAGC
453 AACCTTTTCTTGCGACACCAAAGC
* * * *
3561643 ATCAATGTCATGTTTCCTAATGAAAGGAAATGTGTTCTTGGCTTCCAATCTTGAAAACAATGGAG
1 ATCAATGTCATGTATCCTAATG-AAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAG
* * * * * *
3561708 ACTACGATGAGATTTGTTGCTTGTCATATTTAGGGGACGAATTTTGATTTTAAGGAAAATAAGGC
65 ACTACGATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGC
* * * * **
3561773 AAAGAAAAGATTTTCATGCTAAAGAAAATCATCAATATCATTCATCTTAATAAGGAGAATAAGTT
130 AAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * ** * *
3561838 TATAGTTCTTAATCACAAAATGAATGAAGATCACTACTAGAATGCATGTTTGTCTTGTTTAAGAC
195 TATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * * *
3561903 ACGAA-TATAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAAT
260 ACGAACT-TACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
* * * * * *
3561967 AT-TGTCTATCCTTTTAAGAAGAGTTTGCTTATGGTGCCTATTCCTAAAAAGAAT-GGGATTAGT
324 ATCT-TGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT
*
3562030 ATGACTA--CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAA
388 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA
*
3562093 AACCTTTTCTTGTGACACCAAAGC
453 AACCTTTTCTTGCGACACCAAAGC
* * * *
3562117 ATCAACGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCAAATCATGAAAAGAATGGAGA
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGA
* * * * * * * *
3562182 CTACAATAAGAATTGCTGCTCGCCAAATTTAAGGGATAAATTTTGATTTTAAGGAAAATAGGGCA
66 CTACGATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA
* * * * *
3562247 AAGAAAAGATTTCCATACCAAAGAAAATCATCAATATCATTTATCGTAATGAGGAGAATATGTTT
131 AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * *
3562312 ATTGTCCTTAATCACAAAATGAAAGAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAGGCA
196 ATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* *
3562377 CGAACTTACCCTTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATAT
261 CGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * * ** * * *
3562442 -TGTGTATCCTTGTGAGAAGACTATGTTTATGGTGACTAGTCCGGAATAGAATGCGGATTAGCAT
326 CT-TGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT
*
3562506 GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATG
390 GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATG
3562559 TCATGTTTCC
Statistics
Matches: 2041, Mismatches: 254, Indels: 80
0.86 0.11 0.03
Matches are distributed among these distances:
461 78 0.04
462 276 0.14
463 27 0.01
464 2 0.00
473 306 0.15
474 214 0.10
475 316 0.15
476 744 0.36
477 78 0.04
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (476 bp):
ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGA
CTACGATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA
AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
ATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
CGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
CTTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATG
ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAC
CTTTTCTTGCGACACCAAAGC
Found at i:3563275 original size:158 final size:159
Alignment explanation
Indices: 3562636--3563275 Score: 377
Period size: 158 Copynumber: 4.0 Consensus size: 159
3562626 GAATCGTTGC
* * * * * *
3562636 TTGTCAAATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGACTTCCATGC
1 TTGTCATATTTAAGAGACGAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGATTTCTATGC
* * * ** * *
3562700 CAAAGAAAATCATCAATATCAT-TCATCTTAATGAGGAGAATAAGTTTATAGTTCTTAATCACAA
66 TAAAGAAAAGCATCAATATCATCT-ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* *
3562764 AATGAATGAAGATCATTAGTTGAATGCATGT
130 AATGAATGAAGA-CATTAGTAGAATCCATGT
* * * * * * * * *
3562795 TTGTCTTGTTTAAGACACGAATATAGACTTTAA-AAAAATTGGTAG-GAAG-AAAGCCTTTCT-T
1 TTGTCATATTTAAGAGACGAATTTTGATTTTAAGAAAAATAGGT-GCAAAGAAAAG-ATTTCTAT
* ** * ** * * * *
3562856 GCGAAACCAAAGCATCAATATCGTCTATCCTTTTGA-GAAAAGTTTGTTTATGGTGCCT-ATTAC
64 GCTAAAGAAAAGCATCAATATCATCTATCCTAATGAGGAGAA-TGTGTTTATAGTGCCTAATCAC
* * *
3562919 TAAAAAGAATG--G-GATTAGTATGACTATTCATGT
128 -AAAATGAATGAAGACATTAGTA-GA--ATCCATGT
* * * ** ** *
3562952 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAT-GGTGGAAAGAAAAGATTT-TATTG
1 TTGTCATATTTAAGAGACGAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGATTTCTA-TG
* ** * * * * *
3563015 TCCTTAATCAAAGCATCAATGTCATGTTTCCTAATGAAGG-GAATGTGTTCT-TGGCT-CCCAAT
65 --CTAAAGAAAAGCATCAATATCATCTATCCTAATG-AGGAGAATGTGTT-TATAG-TGCCTAAT
** * ** *
3563077 CTTGAAAA-GAATGGAGAC--TACGATGAGAATCGTTGC
125 C-ACAAAATGAATGAAGACATTA-G-T-AGAATCCATGT
* *
3563113 TTGTCATATTTAAGGGACGAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTCTATGC
1 TTGTCATATTTAAGAGACGAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGATTTCTATGC
* * *
3563177 TAAAGAAAATCATCAATATCAT-TATCATAATGAGGAGAATGTGTGTATAGTGCCTAATCACAAA
66 TAAAGAAAAGCATCAATATCATCTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
3563241 ATGAATGAAGATCATTAGTAGAATCCATGT
131 ATGAATGAAGA-CATTAGTAGAATCCATGT
3563271 TTGTC
1 TTGTC
3563276 TCTTTTGTGG
Statistics
Matches: 352, Mismatches: 92, Indels: 75
0.68 0.18 0.14
Matches are distributed among these distances:
154 6 0.02
155 2 0.01
156 3 0.01
157 56 0.16
158 115 0.33
159 51 0.14
160 42 0.12
161 66 0.19
162 7 0.02
163 3 0.01
164 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.32
Consensus pattern (159 bp):
TTGTCATATTTAAGAGACGAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGATTTCTATGC
TAAAGAAAAGCATCAATATCATCTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
ATGAATGAAGACATTAGTAGAATCCATGT
Found at i:3563448 original size:476 final size:476
Alignment explanation
Indices: 3562555--3572386 Score: 11661
Period size: 476 Copynumber: 20.6 Consensus size: 476
3562545 TTTTATCAAA
* *
3562555 AATGTCATGTTTCCTAATGAAGGGAAGGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* *
3562620 CGATGAGAATCGTTGCTTGTCAAATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * **
3562685 AAAAGACTTCCATGCCAAAGAAAATCATCAATATCATTCATCTTAATGAGGAGAATAAGTTTATA
131 AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * ** * *
3562750 GTTCTTAATCACAAAATGAATGAAGATCATTAGTTGAATGCATGTTTGTCTTGTTTAAGACACGA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * *
3562815 A-TATAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
261 ACT-TACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * * * * * *
3562879 TCTATCCTTTTGAGAAAAGTTTGTTTATGGTGCCTATTACTAAAAAGAAT-GGGATTAGTATGAC
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * **
3562943 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGAT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCT
* * *
3563008 TTTATTGTCCTTA-ATCAAAGCATC
455 TTTCTTG--C-GACACCAAAGCATC
*
3563032 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* *
3563097 CGATGAGAATCGTTGCTTGTCATATTTAAGGGACGAATTTTGATTTTAAGGAAAATAGGGCAAAG
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * *
3563162 AAAAGATTTCTATGCTAAAGAAAATCATCAATATCA-TTATCATAATGAGGAGAATGTGTGTATA
131 AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * *
3563226 GTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCTTTTGTGGCATGA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
** * * * *
3563291 ACTTACACTTTGTAAAAATTGGTGGGAAGAAAGCCTTCCTTGAGAAACCAAAGTATCAATACCGT
261 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * *
3563356 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAACCCT-AAAAAAATGGGGATTGGTATGACT
326 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * * * *
3563420 ACTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATAAAAAACGGAGGAAAAAAAACCTT
391 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTT
**
3563485 TT-TGTGCGACA-CAAAATATC
456 TTCT-TGCGACACCAAAGCATC
* * * * * * **
3563505 AATGACATGTATCCTAATGAAGGGAATGTGTTCTTGATCCCCAATCATGAAAAGAGTGGAGACGG
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* * * * * *
3563570 TTATGAGAATCGTTGCTTGTTC-TTTTTTAGAGAATGAACTTTT-ATTTTAAGGAAATTA-AGCA
66 TGATGAGAATCGTTGCTTG-TCATATTTAAG-GGATGAA-TTTTGATTTTAAGGAAAATAGGGCA
* * *
3563632 AAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTT
128 AAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
**
3563697 ATTA-TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTAATCTCATTTGAGGC
193 A-TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * * * * * *
3563761 ATGGACTTAGACTTTACAAAAATTTGAGGGAAGAAAGCCTTTCTTGCGTAACCAAAGCGTCAATA
257 ACGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATA
* * * * * * *
3563826 TCATCTATCCTTATGAGAAGACTATATTTGTGGTGCTTAATCCTAAAAAGAATGGGGATTAGCAT
322 TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* * * * * *
3563891 GACTATTCAAGTTTATTTTATTTAAGAGATAAACTTTGATTGTATCAAAAACGGCGGAAAGAAAA
387 GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* *
3563956 GCTTTTCTTGCAACACCAAAGCATC
452 CCTTTTCTTGCGACACCAAAGCATC
* * * *
3563981 AATGTCATGTATCTTAACGAAGAGG-ATGTGTTCTTGGTTCCAAATCTTGAAAAGAATGGTAG-C
1 AATGTCATGTTTCCTAATGAAG-GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGG-AGAC
* * * * * *
3564044 TGTTA-GAGAATCGATGGCTT-TCTTATTTAAGGGATGAATTTTGATTTTGAGGAAAATGGGGCA
64 TATGATGAGAATCG-TTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA
* * * * *
3564107 AAGAAAAGATTTCCATACAAAAGAAAATTATCAATATCATTTAACCTAATGAGGAGAATGAGTTT
128 AAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * * *
3564172 ATAGTTCTTAATCATAAAATGAATGAAGA-CAATTACTAGAATCCATGTTTATCTTATTTGAGGC
193 ATAGTGCCTAATCACAAAATGAATGAAGATC-ATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * ** *
3564236 CCAAACTTAGGCTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTT-CTGAAACCAAAGCATCAAT
257 ACGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC-GAAACCAAAGCATCAAT
* * * *
3564300 GTCATGTATCTTTGTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
321 ATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTA
* * *
3564365 TTACTATTCATGTTTGTCTCATTTAAGAGACAAACTTTTATTCTATCAAAAACGGTGGAAAGAAA
386 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* **
3564430 TCCTTTTTCTTGCGATGCCAAAGCATC
451 ACC-TTTTCTTGCGACACCAAAGCATC
** **
3564457 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTAATTCCCAATCTTGAAAAGAATACAGACTA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* * * * *
3564522 CGATAAGAATCATTGCTTGTCACATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGCAAAG
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* ** * * *
3564587 AAAAGATTTTCATGCTAAAGAAAATCATCAATATCATTTATCCTAAAAAAGAGAATGTCTTTATT
131 AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * *
3564652 GTGCCTAATCACAAAAAGAATGAAGATCATTGCTAGAATCCAAGTTTGTCTCATTTGAGGCGCAA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * ** *
3564717 ACTTATACTTTACAAAAATTGGTGGGAAGAAAGCCTTCCTAGCGAAACCAAAGTGTCAATATAGT
261 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * *
3564782 GTATCTTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAATAGTATGACT
326 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
*
3564847 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAACCTT
391 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTT
* *
3564912 TTCTTGCAACACTAAAGCATC
456 TTCTTGCGACACCAAAGCATC
* * * * * * * *
3564933 TATGTCATCTATCCTAAAGAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTAGAGACTG
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* * * * * * * * ** *
3564998 TTATGGGAATTGATGCTTGTCTTTTTTAAGGG-TGGAACTTTGTTTTTGTGGAAAATTGGGCAAA
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGAT-GAATTTTGATTTTAAGGAAAATAGGGCAAA
* * * *
3565062 GAAAAGATTTCCTTACTAAAGAAAATTATCAATATCATTTATCCAAATGAGGAGAATGTGTTTAT
130 GAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * * * * * *
3565127 AGTGCCTAACCACAAAATGAATGAAGATCTTTACTAGAATGCACGTTTATCCCATTTGAGGCACT
195 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * * * *
3565192 AATTTACTCTTTTCAAAAATTGGTGGGAAGAAAGCCTTCCTTGCAAAACCAAAGCGTCAATATCA
260 AACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * *
3565257 TGTATCCTTACGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAC
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * *
3565322 TATTCATGTTTATCTTATTTAAGAGTCAAACTTTGATTAC-ATAAAAAACGGTGGAAAGAAAACC
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT-CTATCAAAAACGGTGGAAAGAAAACC
* *
3565386 TTTTCTTGCAACACTAAAGCATC
454 TTTTCTTGCGACACCAAAGCATC
* * * * * * * *
3565409 TACGTCATCTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAGTGGAGACTA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* * * * * * * *
3565474 CT-ATGGGAATTGATGCTTGTCTTTTTTAAGGGCA-GAACTTTGATTTTGATGAAAATTA-GGCA
66 -TGATGAGAATCGTTGCTTGTCATATTTAAGGG-ATGAATTTTGATTTTAAGGAAAA-TAGGGCA
* * * * *
3565536 AGGAAAAGATTTCCATGCTAAAAAAAATTATCAGTATCATTTATCCTAATGAGTAGAATGTGTTT
128 AAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * *
3565601 ATTGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCACGTTTGTCTCATTTGTGGCA
193 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* * * * **
3565666 CGAACTTACAGTTTGCAAAAATTGGAGGGAAGAAAGCCTTCCTTGCGAAACCAAAGTGTCAATAT
258 CGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * * *
3565731 TGTGTATCCCTATGAGAAAACTATATTTATGGTGCCTAATCCTGAAAAGAATAGGGATTGGTTTG
323 CGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATG
* * * *
3565796 AATATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAC
388 ACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAC
* * *
3565861 CTGTTCTTGCAACACCAAAACATC
453 CTTTTCTTGCGACACCAAAGCATC
* * * * * * * *
3565885 AATGCCATGTATCCTAATGAAGGGAATGTGTTCTTGG-TCCAAATTTTGAAAACATTGGGGACTG
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* * * * *
3565949 TTATGAGAATCGATGCTTGTCGTAATTAAGGGATGAATTTTGATTTTAAGGGAAAA-AAGGCAAA
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAA-GGAAAATAGGGCAAA
* * * *
3566013 GAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATAAGAAAAATGTGTTTAC
130 GAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
*
3566078 AGTGCCAAATCACAAAATGAATGAAGATCATTACTAGAATCCAAT-TTTGTCTCATTTGAGGCA-
195 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC-ATGTTTGTCTCATTTGAGGCAC
* *
3566141 GAACTTACCCTTTACAAAAATTGGTGGGAAGAATGCCTTTCTTGCGAAACCAAAATGTCAATATC
259 GAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC-AAA-G-C---ATC
** * * *
3566206 GTGTATCCTTATGAGAAGTGTATCCTTATGGGAAGACTATGTTTATGGTGTCTAATCTTGAAAAG
318 ----A-----AT-A-TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* * * *
3566271 AATGGGGATTAGTATTACAATTCATGTTTTTCTTATTTAAGAGACAAACTTTTATTCTATCAAAA
372 AATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* *
3566336 ACGGTGGAAAGAAAACCTTTCCTTGCGACACCAAAGCAAC
437 ACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATC
* * *
3566376 AATGTCATGTTTCCTAATGAAGAGAAAGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* *
3566441 CGATGAGAATCGTTGCTTGTCAAATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * * * *
3566506 AAAAGATTTTCATGCAAAATAAAATCGTCAATATCGTTTATCCTAATGCGGAGATTGCGTTTATA
131 AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * *
3566571 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGGGGTC-CA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG-CACG
** * * * *
3566635 AACTTAGGCTTTACAAAAATTGGTTGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATGTCA
260 AACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * * *
3566700 TATATCTTTGTTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATTAC
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* *
3566765 TATTCAT-TTTGTCTTATTTAAGAGACAAACTTTTATTCTATCAAAAACGGTGGAAAGAAATCCT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACC-
**
3566829 TTTTCTTGCGATGCCAAAGCATC
454 TTTTCTTGCGACACCAAAGCATC
* ** *
3566852 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAACAATACAGACAA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* ** *
3566917 TGATGAGAATCATTGCTTGTCATATTTAAGGGACAAATTTTGATTTTAAGGAAAATATGGCAAAG
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * * **
3566982 AAAAGATTTCCATGCCAAAGAAAATCATCAGTATCATTCATCTTAGTGAGGAGAGTAAGTTTATA
131 AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * ** * * **
3567047 GTTCTTAATCACAAAATGAATGAACATCATTACTAGATTTCATGTTTGTCTTGTTTAAGACATAA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
*** * * *
3567112 AAACAGACTTTA-AAAAAGTTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCCTCAATATCG
261 ACTTACACTTTACAAAAA-TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * * * *
3567176 TCTATCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTCATGAAAA-AGAT-GGGATTAGTATGA
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA-ATGGGGATTAGTATGA
* * * *
3567239 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAAAAACGGTGGAAGGAAAAGC
389 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACC
*
3567304 TTTTGC-TGCGACGCCAAAGCATC
454 TTTT-CTTGCGACACCAAAGCATC
* ** * *
3567327 AATGTCATATTTCCTAATGAAAAGAATGTGTTCTTGGCTCCCAATCTTAAAAAGAATGGAGACTA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
** * * * *
3567392 CAATGAGAATTGTTGCTTATCATATTTAGGGGAAGAATTTTGATTTTAAGGAAAATAGGGCAAAG
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * ** * * *
3567457 AAAAGATTTTCATGCTAAAGAAAATCGTCAATATCATTTATCCTAAAAAAGAGAATGAGTTTATT
131 AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * * * **
3567522 GTCCCTAATCACAAAATTAATGGAGATCATTGCTGGAATCCAAGTTTTTCTCATTTGAGGTGCGA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
** * * * ** *
3567587 ACTTATGCTTTACAAAAATTGGTGGGAAGAAACCCTTCCTAGCGAAACCAAAGTTTCAATATAGT
261 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
** * ** *
3567652 GTATATTTATGAGAAGACTATGTTTAAGGTGCCTAATCCAAAAAAGAATGGGGATTAGTATGAGT
326 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* *
3567717 ATTCATGTTTG---TA-TTAAGAGACAAACTTTGATTCCATAAAAAACGGTGGAAAGAAAACCTT
391 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTT
* *
3567778 TTCTTGCAACACTAAAGCATC
456 TTCTTGCGACACCAAAGCATC
* * * * ** * * *
3567799 TATGTCATCTATCCCAAACAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTAGAGACTG
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* * * * * * * ** *
3567864 TTATGGGAATTGATGCTTGTCTTTTTTAAGGG-TGTAACTTTGATTTTGTGGAAAATTGGGCAAA
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATG-AATTTTGATTTTAAGGAAAATAGGGCAAA
* *
3567928 -AAACATATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGATTA
130 GAAA-AGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * *
3567992 TTGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGTGGCAC
194 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * * * ** *
3568057 GAACTTACAGTTTGCGAAAATTGGAGGGAAGAAAGCCTTCCTTGGGAAACCAAAGTGTCAATATT
259 GAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * * *
3568122 GTGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAGTCCTGAAAAGAATGGGGACTGGTATGA
324 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * *
3568187 ATATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAATGGTGGAAAGAAAAC
389 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAAACGGTGGAAAGAAAAC
** * *
3568252 CCGTTCTTGCAACACCAAAACATC
453 CTTTTCTTGCGACACCAAAGCATC
* * * * *
3568276 AATGCCATGTATCCTAATGAAGGGAATGTGTTCTTGG-TCCAAATCTTGAAAACATTAGG-GACT
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GGAGACT
* * * * * * *
3568339 GTTATGAGAATCGATGCTTGTCATAATTAAGGGGTGAATTTTGATTTTAAGGGAAATAAGGCAAA
65 ATGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAA
* * * *
3568404 GAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATAAGAAAAATGTGTTTAC
130 GAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * *
3568469 AGTGCCAAATCACAACATGAATGAAGATCATTACTAGAATCCAAGTTTGTCTCATTTGAGGCA-G
195 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* *
3568533 AACTTACCCTTTACAAAAATTGGTGGGAAGAATGCCTTTCTTGCGAAACCAAAATGTCAATATCG
260 AACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC-AAA-G-C---ATC-
** * * *
3568598 TGTATCCTTATGAGAAGTGTATCCTTATGGGAAGACTATGTTTATGGTGTCTAATCTTGAAAAGA
318 ---A-----AT-A-TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
* * * *
3568663 ATGGGGATTAGTATTACAATTCATGTTTTTCTTATTTAAGAGACAAACTTTTATTCTATCAAAAA
373 ATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
* * *
3568728 CGGTGGAAAGAAATCCTTTCCTTGCGACACCAAAGCAAC
438 CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATC
* * *
3568767 AATGTCATGTTTCCTAATGAAGAGAAAGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* *
3568832 CGATGAGAATCGTTGCTTGTCAAATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * * * *
3568897 AAAAGATTTTCATGCAAAATAAAATCGTCAATATCGTTTATCCTAATGCGGAGATTGCGTTTATA
131 AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * *
3568962 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGGGGTC-CA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG-CACG
** * * * *
3569026 AACTTAGGCTTTACAAAAATTGGTTGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATGTTG
260 AACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * * *
3569091 TATATCTTTGTTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATTAC
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* *
3569156 TATTCAT-TTTGTCTTATTTAAGAGACAAACTTTTATTCTATCAAAAACGGTGGAAAGAAATCCT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACC-
** *
3569220 TTTTCTTGCGATGCCAAAGCACC
454 TTTTCTTGCGACACCAAAGCATC
* ** * *
3569243 AATGTCATGTTTCCTAATGAAGGGATTGTGTTCTTGGTTCCCAATCTTGAAAAGAATACAAACAA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* ** * *
3569308 TGATGAGAATCATTGCTTGTCATATTTAAGGGACAAATTTTGATTTTAAGGAGAATATGGCAAAG
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * **
3569373 AAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTCATCTTAGTGAGGAGAATAAGTTTATA
131 AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * ** * * *
3569438 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGATTTCATGTTTGTCTTGTTTAAGACA-TA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * *
3569502 A-ATACAGCTTTA-AAAAAGTTGGTAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATC
261 ACTTACA-CTTTACAAAAA-TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* * * * * * * *
3569565 GTCTATCCTTTTGAGAAGAGTTTGTTTATAGTGCCTATTCATGAAAAGGAT-GGGATTAGTATGA
324 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * *
3569629 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATAAAAAACGGTGGAAGGAAAAGC
389 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACC
* *
3569694 TTTTGC-TGTGACGCCAAAGCATC
454 TTTT-CTTGCGACACCAAAGCATC
* ** * *
3569717 AATGTCATATTTCCTAATGAAAAGAATGTGTTCTTGGCTCCCAATCTTAAAAAGAATGGAGACTA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* * *
3569782 TGATGAGAATCGTTGCTTATCATATTTAGGGGACGAATTTTGATTTTAAGGAAAATAGGGCAAAG
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * ** * * *
3569847 AAAAGATTTTCATGCTAAAGAAAATCGTCAATATCATTTATCCTAAAAAAGAGAATGCGTTTATT
131 AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * **
3569912 GTGCCTAATCACAAAATGAATGGAGATCATTGCTGGAATCCAAGTTTTTCTCATTTGAGGTGCGA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
** * * * ** *
3569977 ACTTATGCTTTACAAAAATTGGTGGGAAGAAACCCTTCCTAGCGAAACCAAAGTGTCAATATAGT
261 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
** * ** *
3570042 GTATATTTATGAGAAGACTATGTTTAAGGTGCCTAATCCAAAAAAGAAT-GGGATTAGTATGAGT
326 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* *
3570106 ATTCATGTTTGTATTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAACCTT
391 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTT
* *
3570171 TTCTTGCAACACTAAAGCATC
456 TTCTTGCGACACCAAAGCATC
* * * * * * *
3570192 TATGTCATCTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAGTAGAGACTG
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* * * * * * * ** *
3570257 TTATGGGAATTGATGCTTGTCTTTTTTAAGGG-TGTAACTTTGATTTTGTGGAAAATTGGGCAAA
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATG-AATTTTGATTTTAAGGAAAATAGGGCAAA
* * *
3570321 -AAACATATTTCCAAGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGATTA
130 GAAA-AGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * *
3570385 TTGTGCCTAATCACAAAATGAATGAAGATCATTACAAGAATCCATGTTTGTCTCATTTGTGGCAC
194 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * * ** *
3570450 GAACTTACAGTTTGCAAAAATTGGAGGGAAGAAAGCCTTCCTTGGGAAACCAAAGTGTCAATATT
259 GAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* *
3570515 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGACTGGTATGA
324 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * *
3570580 ATATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAATGGTGGAAAGAAAAC
389 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAAACGGTGGAAAGAAAAC
** * *
3570645 CCGTTCTTGCAACACCAAAACATC
453 CTTTTCTTGCGACACCAAAGCATC
* * * * *
3570669 AATGCCATGTATCCTAATGAAGGGAATGTGTTCTTGG-TCCAAATCTTGAAAACATTAGG-GACT
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAAT-GGAGACT
* * * * * * * *
3570732 GTTATGAGAATCGATGCTTGTTATAATTAAGGGGTGAATTTTGATTTTAAGGGAAATAAGGCAAA
65 ATGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAA
* *
3570797 GAAAAGATTTCCATGCTAAAGAAAATCAACAATATCATTTATCCTAATGAGGAGAATGTATTTAT
130 GAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
*
3570862 AGTGCCAAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
195 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * *
3570927 AACTTACCCTTTACAAAAATTGGTGGGATGAATGCCTTTCTTGCGAAACCAAAGCATCAATATCG
260 AACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * * * * * *
3570992 TTTATCCTTGTGAGAAGACTATGTTTATGATGTCTAATCTTGAAAATAATGGGGATTAGTGTTAC
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* *
3571057 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTTAGTCTATCAAAAACGGTGGAAAGAAAACCT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCT
* *
3571122 TTCCTTGCAACACCAAAGCATC
455 TTTCTTGCGACACCAAAGCATC
3571144 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTT-AAAATGAATGGAGACT
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAA-GAATGGAGACT
* *
3571208 ACGATGAGAATCGTTGCTTGTCAAATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAA
65 ATGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAA
* * * *
3571273 GAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTCATCTTAATGAGGAGAATAAT-TTTA
130 GAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT-GTGTTTA
* * * ** * *
3571337 TAGTTCTTAATCACAAAATGAATGAAGATCATTACT-GAAATGCATGTTTGTCTTGTTTAAGACA
194 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG-AATCCATGTTTGTCTCATTTGAGGCA
* * * * **
3571401 CGAA-TATAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTACGAAACCAAAGTGTCAATA
258 CGAACT-TACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATA
* * * * *
3571465 TCGTCTATCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTCCT-AAAAGGAAT-GGGATTAGTA
322 TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAATGGGGATTAGTA
* *
3571528 TGACTATTCATGTTTGCCTTATTTAAGAGACAAAATTTGATT-TCATCAAAAACGGTGGAAAGAA
386 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAAACGGTGGAAAGAA
* *
3571592 AAGCTTTTGTTGCGACACCAAAGCATC
450 AACCTTTTCTTGCGACACCAAAGCATC
* * *
3571619 AATGTCATGTTTCCTAATGAAAGGAGTGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
* * * *
3571684 CGATGAGAATTGTTGCTTGCCAAATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * *
3571749 AAAAGATTTCCATGCCATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATT
131 AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
3571814 GTCCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* *
3571879 ACTTACCCATTACAAAAATTGGTGGGAAGAAAGCCTTT-TCTGCGAAACCAAAGCATCAATATCG
261 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCT-TGCGAAACCAAAGCATCAATATCG
* * * *
3571943 TGTATCCTTGTGAGAAGACTATGTTTATGGTGCCTAGTCCTGAATAGAATGGGGATTAGCATGAC
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * *
3572008 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGATGGAAGGAAAAGCT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCT
* *
3572073 TTTATTGTGACACCAAAGCATC
455 TTTCTTGCGACACCAAAGCATC
* * *
3572095 AATGTCATGTTTCCTAATGAGGGGAAGGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAGACTA
1 AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
** * *
3572160 AAATGAGAATCGTTGCTTGTCAAATTTAAGGGATAAATTTTGATTTTAAGGAAAATAGGGCAAAG
66 TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
* * * * **
3572225 AAAAGACTTCCATGCCAAAGAAAATCATCAATATCATTCATCTTAATGAGGAGAATAAGTTTATA
131 AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * ** * *
3572290 GTTCTTAATCACAAAATGAATGAAGATCATTAGTTGAATGCATGTTTGTCTTGTTTAAGACACGA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * *
3572355 A-TATAGACTTTAAAAAAATTGGTAGGAAGAAA
261 ACT-TACACTTTACAAAAATTGGTGGGAAGAAA
3572387 CTCCTCTCCT
Statistics
Matches: 8019, Mismatches: 1199, Indels: 275
0.84 0.13 0.03
Matches are distributed among these distances:
471 5 0.00
472 390 0.05
473 134 0.02
474 531 0.07
475 2200 0.27
476 3279 0.41
477 654 0.08
478 6 0.00
480 2 0.00
481 2 0.00
483 2 0.00
484 1 0.00
485 1 0.00
487 6 0.00
489 2 0.00
490 5 0.00
491 246 0.03
492 461 0.06
493 92 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (476 bp):
AATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTA
TGATGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAG
AAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTT
TTCTTGCGACACCAAAGCATC
Found at i:3566228 original size:17 final size:17
Alignment explanation
Indices: 3566206--3566240 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
3566196 TGTCAATATC
3566206 GTGTATCCTTATGAGAA
1 GTGTATCCTTATGAGAA
*
3566223 GTGTATCCTTATGGGAA
1 GTGTATCCTTATGAGAA
3566240 G
1 G
3566241 ACTATGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (17 bp):
GTGTATCCTTATGAGAA
Found at i:3568619 original size:17 final size:17
Alignment explanation
Indices: 3568597--3568631 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
3568587 TGTCAATATC
3568597 GTGTATCCTTATGAGAA
1 GTGTATCCTTATGAGAA
*
3568614 GTGTATCCTTATGGGAA
1 GTGTATCCTTATGAGAA
3568631 G
1 G
3568632 ACTATGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (17 bp):
GTGTATCCTTATGAGAA
Found at i:3572975 original size:158 final size:158
Alignment explanation
Indices: 3572393--3575879 Score: 956
Period size: 158 Copynumber: 22.0 Consensus size: 158
3572383 GAAACTCCTC
* *
3572393 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGG-GATTAGTATGACTATT
1 TCCTTATGAGGAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGAGATTAGTATGA-TATT
* *
3572457 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA-TGGTGGAAAGAAAAGCTTTT
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTGG-AAGAAAAGCCTTT
* * * * *
3572521 GTTGCGACACCAAAGCATCAATGTCATGTT
129 CTTGCGAAACCAAAGCATCAATATCATCTA
* * * * * * * * ** *
3572551 TCCTAATGAGGGGAAG-GTGTTCT-TGGCT-CCCAAT-CTTGAAAAGAAAGGAGACTAAAATGAG
1 TCCTTATGAGGAG-AGTTTGTT-TATGG-TGCCTATTAC-TAAAAAGAATGGAGATTAGTATGAT
* * * ** * * * * *** * * *
3572612 AATCGTTGCTTGTCAAATTTAAGGGATAAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGA
62 ATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTG-GAAGAAAAGC
* * * ** *
3572676 CTTCCATGCCAAAGAAAATCATCAATATCAT-TCA
125 CTTTCTTGCGAAACCAAAGCATCAATATCATCT-A
* ** * * * * * *
3572710 T-CTTAATGAGGAGAATAAGTTTATAGTTCTTAATCAC-AAAATGAATGAAGATCATTAGT-TGA
1 TCCTT-ATGAGGAGAGTTTGTTTATGGTGCCT-ATTACTAAAAAGAATG--GA-GATTAGTATGA
* * * * * *
3572772 -ATGCATGTTTGTCTTGTTTAAGACACGAA-TATAGACTT-TA-AAAAAATTGGTAGGAAG-AAA
61 TATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGA-TTCTATCAAAAATTGGT-GGAAGAAAA
*
3572832 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTA
123 GCCTTTCTTGCGAAACCAAAGCATCAATATCATCTA
* *
3572868 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGG-GATTAGTATGACTATT
1 TCCTTATGAGGAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGAGATTAGTATGA-TATT
* *
3572932 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATT-GTGGAAAGAAAAGCTTTT
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTGG-AAGAAAAGCCTTT
* * * * *
3572996 GTTGCGACACCAAAGCATCAATGTCATGTT
129 CTTGCGAAACCAAAGCATCAATATCATCTA
* * * * * * * ** *
3573026 TCCTAATGAGGGGAAG-GTGTTCT-TGGCT-CCCAAT-CTTGAAAAGAATGGAGACTAAAATGAG
1 TCCTTATGAGGAG-AGTTTGTT-TATGG-TGCCTATTAC-TAAAAAGAATGGAGATTAGTATGAT
* * * ** * * * * *** * * *
3573087 AATCGTTGCTTGTCAAATTTAAGGGATAAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGA
62 ATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTG-GAAGAAAAGC
* * * ** *
3573151 CTTCCATGCCAAAGAAAATCATCAATATCAT-TCA
125 CTTTCTTGCGAAACCAAAGCATCAATATCATCT-A
* ** * * * * * *
3573185 T-CTTAATGAGGAGAATAAGTTTATAGTTCTTAATCAC-AAAATGAATGAAGATCATTAGT-TGA
1 TCCTT-ATGAGGAGAGTTTGTTTATGGTGCCT-ATTACTAAAAAGAATG--GA-GATTAGTATGA
* * * * * *
3573247 -ATGCATGTTTGTCTTGTTTAAGACACGAA-TATAGACTT-TA-AAAAAATTGGTAGGAAG-AAA
61 TATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGA-TTCTATCAAAAATTGGT-GGAAGAAAA
*
3573307 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTA
123 GCCTTTCTTGCGAAACCAAAGCATCAATATCATCTA
* *
3573343 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGG-GATTAGTATGACTATT
1 TCCTTATGAGGAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGAGATTAGTATGA-TATT
* *
3573407 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA-TGGTGGAAAGAAAAGCTTTT
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTGG-AAGAAAAGCCTTT
* * * * *
3573471 GTTGCGACACCAAAGCATCAATGTCATGTT
129 CTTGCGAAACCAAAGCATCAATATCATCTA
* * * * * * * * ** *
3573501 TCCTAATGAGGGGAAG-GTGTTCT-TGGCT-CCCAAT-CTTGAAAAGAAAGGAGACTAAAATGAG
1 TCCTTATGAGGAG-AGTTTGTT-TATGG-TGCCTATTAC-TAAAAAGAATGGAGATTAGTATGAT
* * * ** * * * * *** * * *
3573562 AATCGTTGCTTGTCAAATTTAAGGGATAAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGA
62 ATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTG-GAAGAAAAGC
* * * ** *
3573626 CTTCCATGCCAAAGAAAATCATCAATATCAT-TCA
125 CTTTCTTGCGAAACCAAAGCATCAATATCATCT-A
* ** * * * * * *
3573660 T-CTTAATGAGGAGAATAAGTTTATAGTTCTTAATCAC-AAAATGAATGAAGATCATTAGT-TGA
1 TCCTT-ATGAGGAGAGTTTGTTTATGGTGCCT-ATTACTAAAAAGAATG--GA-GATTAGTATGA
* * * * * *
3573722 -ATGCATGTTTGTCTTGTTTAAGACACGAA-TATAGACTT-TA-AAAAAATTGGTAGGAAG-AAA
61 TATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGA-TTCTATCAAAAATTGGT-GGAAGAAAA
*
3573782 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTA
123 GCCTTTCTTGCGAAACCAAAGCATCAATATCATCTA
* *
3573818 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGG-GATTAGTATGACTATT
1 TCCTTATGAGGAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGAGATTAGTATGA-TATT
* *
3573882 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA-TGGTGGAAAGAAAAGCTTTT
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTGG-AAGAAAAGCCTTT
* * * * *
3573946 GTTGCGACACCAAAGCATCAATGTCATGTT
129 CTTGCGAAACCAAAGCATCAATATCATCTA
* * * * * * * * ** *
3573976 TCCTAATGAGGGGAAG-GTGTTCT-TGGCT-CCCAAT-CTTGAAAAGAAAGGAGACTAAAATGAG
1 TCCTTATGAGGAG-AGTTTGTT-TATGG-TGCCTATTAC-TAAAAAGAATGGAGATTAGTATGAT
* * * * * * * * * * *** * * *
3574037 AATCGTTGCTTGACATATTTAGGGGATAAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGA
62 ATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTG-GAAGAAAAGC
* * * ** *
3574101 CTTCCATGCCAAAGAAAATCATCAATATCAT-TCA
125 CTTTCTTGCGAAACCAAAGCATCAATATCATCT-A
* ** * * * * * *
3574135 T-CTTAATGAGGAGAATAAGTTTATAGTTCTTAATCAC-AAAATGAATGAAGATCATTAGT-TGA
1 TCCTT-ATGAGGAGAGTTTGTTTATGGTGCCT-ATTACTAAAAAGAATG--GA-GATTAGTATGA
* * * * * *
3574197 -ATGCATGTTTGTCTTGTTTAAGACACGAA-TATAGACTT-TA-AAAAAATTGGTAGGAAG-AAA
61 TATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGA-TTCTATCAAAAATTGGT-GGAAGAAAA
*
3574257 GCCTTTCTTGCGAAACCAAAGCATCAATATCGTCTA
123 GCCTTTCTTGCGAAACCAAAGCATCAATATCATCTA
* * *
3574293 TCCTTTTGAGAAGAGTTTGTTTATAGTGCCTATTACTAAAAAGAATGG-GATTAGTATGACTATT
1 TCCTTATGAGGAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGAGATTAGTATGA-TATT
* *
3574357 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA-TGGTGGAAAGAAAAGCTTTT
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTGG-AAGAAAAGCCTTT
* * * *
3574421 GTTGCGACAA-CAAAGCATCAATGTCATGTT
129 CTTGCGA-AACCAAAGCATCAATATCATCTA
* * * * * * *
3574451 TCCTAATGAAGG-GAATGTGTTCT-TGGCT-CCCAAT-CTTGAAAAGAATGGAGACTA-TGATGA
1 TCCTTATG-AGGAGAGTTTGTT-TATGG-TGCCTATTAC-TAAAAAGAATGGAGATTAGT-ATGA
* ** * * * * * * *** * *
3574511 GAATTGTTGCTTGTCATATTTAGGGGACAAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAG
61 -TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTG-GAAGAAAAG
** * ** *
3574575 ATTTTCATGCGAAAGAAAATCATCAATATCAT-TCA
124 CCTTTCTTGCGAAACCAAAGCATCAATATCATCT-A
* * * * * * * * * * *
3574610 TCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCAC-AAAATGATTGAAGATCATTACTAGA-A
1 TCCTTATGAGGAGAGTTTGTTTATGGTGCCT-ATTACTAAAAAGAATGGAGATTAGTA-T-GATA
* * * * * *
3574673 TGT-ATGTTTGTCTTGTTTGAGACACGAA-TTTAGACTT-TA-AAAAAATTGATAGGAAG-AAAG
63 T-TCATGTTTGTCTTATTTAAGAGACAAACTTT-GA-TTCTATCAAAAATTGGT-GGAAGAAAAG
* * *
3574733 CCTTTCTTGCAAAACCAAAGCTTCAATATCATGTA
124 CCTTTCTTGCGAAACCAAAGCATCAATATCATCTA
* * * * * * * *
3574768 TCTTTTTGAGAAAAGTTTGTTTATGGTGCCTAATCCTGAAAAGAAT-TAGATTAGTATGACTATT
1 TCCTTATGAGGAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGAGATTAGTATGA-TATT
* * * * * *
3574832 TATGTTTGTCTT-TGTAAGAGAAAAACTTTGATTCCATCAAAAA-TAGTGGAA-AAAAACCTTGT
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTGGAAGAAAAGCCTT-T
* ** * *
3574894 CTTGTGATGCCAAAGCATCAGTGTCATCTA
129 CTTGCGAAACCAAAGCATCAATATCATCTA
* * * * * * * ** * *
3574924 TCCTAAAGAAGG-GAATGTGTTCT-TGGTTCC-AAT-CTTGAAAAGAGGGGAGACTATTATGGGA
1 TCCTTATG-AGGAGAGTTTGTT-TATGGTGCCTATTAC-TAAAAAGAATGGAGATTAGTAT--GA
* * ** * * * * * **
3574985 -AATGATCCTCG-CAGTT-TTTAAGTG-CGGAACTTTGATTTTA-CGGAAAATTAGG-CAAAGAA
61 TATTCATGTTTGTC--TTATTTAAGAGAC-AAACTTTGATTCTATC-AAAAATT-GGTGGAAGAA
* * * * * *
3575044 AAG-ATTTCCATGCTAAA-AAAATCATCAATATCATTTA
121 AAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATCTA
* * * * ** * * * *
3575081 TCCTAATAAGGAGAATGTGTTTATTATGCCTAATCAC-AAAATGAATGAAGATTATTACTAGA-A
1 TCCTTATGAGGAGAGTTTGTTTATGGTGCCT-ATTACTAAAAAGAATGGAGATTAGTA-T-GATA
* ** * * ** * * *
3575144 -TCTATGTTTGTCTCATTTTCGACACGAACTTACACTT-T-GCAATAATTAGTGGGAAG-AAAGC
63 TTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAATTGGT-GGAAGAAAAGC
* ** * *
3575205 CTTCCTTGCGAAACCAAAGTGTCAATATCGTGTA
125 CTTTCTTGCGAAACCAAAGCATCAATATCATCTA
* * * * *** * * * *
3575239 TCCTTAGGAGAAAACTACATTTATGGTGCCTAATCCTAAAAAGAATGGGGATTGGTATGACTATT
1 TCCTTATGAGGAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGAGATTAGTATGA-TATT
* * ** * *
3575304 CTTGTTTGTCTTATTTAAGAGACAAACTTTAATTCTAT-AAAAAACGGTAGAAAGAAAA-CTTGT
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGT-GGAAGAAAAGCCT-T
* * *
3575367 TCTTGCGACACCAAAACATCAATGA-CATGTA
128 TCTTGCGAAACCAAAGCATCAAT-ATCATCTA
* * * * * * * * * * *
3575398 TCCTAATGAAGGA-AATATGTTCT-TGGTCCCAATCA-TGAAAAGAGTGGAGA-TGGTTACGAGA
1 TCCTTATG-AGGAGAGTTTGTT-TATGGTGCCTATTACTAAAAAGAATGGAGATTAG-TATGATA
* * * * ** * * *** * ** *
3575459 ATCGTTGCTTGTCTTTTTTAA-AGGATGAACATTGATTTTAAGGAAAATAAGG-CAAAAAAAAG-
63 TTC-ATGTTTGTCTTATTTAAGA-GACAAACTTTGATTCTATCAAAAAT-TGGTGGAAGAAAAGC
* * ** ** *
3575521 ATTTCTATGCAAAAGAAAATTATCAATATCATTTA
125 CTTTCT-TGCGAAACCAAAGCATCAATATCATCTA
* * * * * * * * * *
3575556 TCCTAATAAGGAGAATGTGTTTATTGTGCCTAATCAC-AAAATGAATGAAGATCATTACTAGA-A
1 TCCTTATGAGGAGAGTTTGTTTATGGTGCCT-ATTACTAAAAAGAATGGAGATTAGTA-T-GATA
* * * * * *
3575619 TCCATGTTTGTCTTATTTGAG-GCACGAACTTAGA-CCT-TACAAAAATTGGGGGGAAG-AAAGC
63 TTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTAT-CAAAAATT-GGTGGAAGAAAAGC
**
3575680 CTTTCTTGC-ATAACCATGGCATCAATATCGA-CTA
125 CTTTCTTGCGA-AACCAAAGCATCAATATC-ATCTA
* * * * * * * * * *
3575714 TCTTTATGAGAAGACTATATTTGTGGTGCTTAATCCTAAAAAGAATGGGGATTAGTATGACTATT
1 TCCTTATGAGGAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGAGATTAGTATGA-TATT
* * *
3575779 CAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAAATGGTGGAAAGAAAAGAAGCT
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTGG-AAG--AA-AAGCC
* * *
3575843 TTTCTTGCTG-CACCAAAGCATCAATGTCATGTA
126 TTTCTTGC-GAAACCAAAGCATCAATATCATCTA
3575876 TCCT
1 TCCT
3575880 AACGAAGGGA
Statistics
Matches: 2329, Mismatches: 756, Indels: 484
0.65 0.21 0.14
Matches are distributed among these distances:
154 25 0.01
155 39 0.02
156 98 0.04
157 302 0.13
158 1003 0.43
159 737 0.32
160 51 0.02
161 31 0.01
162 43 0.02
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (158 bp):
TCCTTATGAGGAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGAGATTAGTATGATATTC
ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATTGGTGGAAGAAAAGCCTTTCT
TGCGAAACCAAAGCATCAATATCATCTA
Found at i:3573283 original size:475 final size:474
Alignment explanation
Indices: 3572393--3576641 Score: 5572
Period size: 475 Copynumber: 9.0 Consensus size: 474
3572383 GAAACTCCTC
3572393 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
1 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
3572458 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTGT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTGT
* *
3572523 TGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAGGGGAAGGTGTTCTTGGCTCCCAATCTT
131 TGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTT
* * *
3572588 GAAAAGAAAGGAGACTAAAATGAGAATCGTTGCTTGTCAAATTTAAGGGATAAATTTTGATTTTA
196 GAAAAGAATGGAGACTATAATGAGAATCGTTGCTTGTCATATTTAAGGGATAAATTTTGATTTTA
* *
3572653 AGGAAAATAGGGCAAAGAAAAGACTTCCATGCCAAAGAAAATCATCAATATCATTCATCTTAATG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTCATCCTAATG
* * *
3572718 AGGAGAATAAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTAGTTGAATGCATGTTTG
326 AGGAGAATGAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATGCATGTTTG
3572783 TCTTGTTTAAGACACGAATATAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAAC
391 TCTTGTTTAAGACACGAAT-TAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAAC
3572848 CAAAGCATCAATATCGTCTA
455 CAAAGCATCAATATCGTCTA
3572868 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
1 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
*
3572933 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATTGTGGAAAGAAAAGCTTTTGT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTGT
* *
3572998 TGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAGGGGAAGGTGTTCTTGGCTCCCAATCTT
131 TGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTT
* *
3573063 GAAAAGAATGGAGACTAAAATGAGAATCGTTGCTTGTCAAATTTAAGGGATAAATTTTGATTTTA
196 GAAAAGAATGGAGACTATAATGAGAATCGTTGCTTGTCATATTTAAGGGATAAATTTTGATTTTA
* *
3573128 AGGAAAATAGGGCAAAGAAAAGACTTCCATGCCAAAGAAAATCATCAATATCATTCATCTTAATG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTCATCCTAATG
* * *
3573193 AGGAGAATAAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTAGTTGAATGCATGTTTG
326 AGGAGAATGAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATGCATGTTTG
3573258 TCTTGTTTAAGACACGAATATAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAAC
391 TCTTGTTTAAGACACGAAT-TAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAAC
3573323 CAAAGCATCAATATCGTCTA
455 CAAAGCATCAATATCGTCTA
3573343 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
1 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
3573408 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTGT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTGT
* *
3573473 TGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAGGGGAAGGTGTTCTTGGCTCCCAATCTT
131 TGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTT
* * *
3573538 GAAAAGAAAGGAGACTAAAATGAGAATCGTTGCTTGTCAAATTTAAGGGATAAATTTTGATTTTA
196 GAAAAGAATGGAGACTATAATGAGAATCGTTGCTTGTCATATTTAAGGGATAAATTTTGATTTTA
* *
3573603 AGGAAAATAGGGCAAAGAAAAGACTTCCATGCCAAAGAAAATCATCAATATCATTCATCTTAATG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTCATCCTAATG
* * *
3573668 AGGAGAATAAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTAGTTGAATGCATGTTTG
326 AGGAGAATGAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATGCATGTTTG
3573733 TCTTGTTTAAGACACGAATATAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAAC
391 TCTTGTTTAAGACACGAAT-TAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAAC
3573798 CAAAGCATCAATATCGTCTA
455 CAAAGCATCAATATCGTCTA
3573818 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
1 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
3573883 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTGT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTGT
* *
3573948 TGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAGGGGAAGGTGTTCTTGGCTCCCAATCTT
131 TGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTT
* * * *
3574013 GAAAAGAAAGGAGACTAAAATGAGAATCGTTGCTTGACATATTTAGGGGATAAATTTTGATTTTA
196 GAAAAGAATGGAGACTATAATGAGAATCGTTGCTTGTCATATTTAAGGGATAAATTTTGATTTTA
* *
3574078 AGGAAAATAGGGCAAAGAAAAGACTTCCATGCCAAAGAAAATCATCAATATCATTCATCTTAATG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTCATCCTAATG
* * *
3574143 AGGAGAATAAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTAGTTGAATGCATGTTTG
326 AGGAGAATGAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATGCATGTTTG
3574208 TCTTGTTTAAGACACGAATATAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAAC
391 TCTTGTTTAAGACACGAAT-TAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAAC
3574273 CAAAGCATCAATATCGTCTA
455 CAAAGCATCAATATCGTCTA
*
3574293 TCCTTTTGAGAAGAGTTTGTTTATAGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
1 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
3574358 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTGT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTGT
*
3574423 TGCGACAACAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTT
131 TGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTT
* * * *
3574488 GAAAAGAATGGAGACTATGATGAGAATTGTTGCTTGTCATATTTAGGGGACAAATTTTGATTTTA
196 GAAAAGAATGGAGACTATAATGAGAATCGTTGCTTGTCATATTTAAGGGATAAATTTTGATTTTA
* *
3574553 AGGAAAATAGGGCAAAGAAAAGATTTTCATGCGAAAGAAAATCATCAATATCATTCATCCTAATG
261 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTCATCCTAATG
* * * * * *
3574618 AGGAGAATGTGCTTATAGTGCCTAATCACAAAATGATTGAAGATCATTACTAGAATGTATGTTTG
326 AGGAGAATGAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATGCATGTTTG
* * *
3574683 TCTTGTTTGAGACACGAATTTAGACTTTAAAAAAATTGATAGGAAGAAAGCCTTTCTTGCAAAAC
391 TCTTGTTTAAGACACGAA-TTAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAAC
* * *
3574748 CAAAGCTTCAATATCATGTA
455 CAAAGCATCAATATCGTCTA
* * * * * ** *
3574768 TCTTTTTGAGAAAAGTTTGTTTATGGTGCCTAATCCTGAAAAGAATTAGATTAGTATGACTATTT
1 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
* * * * * *
3574833 ATGTTTGTCTT-TGTAAGAGAAAAACTTTGATTCCATCAAAAATAGTGGAAA-AAAACCTTGTCT
66 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTGT
* ** * * * * *
3574896 TGTGATGCCAAAGCATCAGTGTCATCTATCCTAAAGAAGGGAATGTGTTCTTGG-TTCCAATCTT
131 TGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTT
** * * * * * * * *** *
3574960 GAAAAGAGGGGAGACTATTATGGGAAAT-GATCCTCG-CAGTTTTTAAGTGCGGAACTTTGATTT
196 GAAAAGAATGGAGACTATAATGAG-AATCGTTGCTTGTCA-TATTTAAGGGATAAATTTTGATTT
* * *
3575023 TACGGAAAATTA-GGCAAAGAAAAGATTTCCATGCTAAA-AAAATCATCAATATCATTTATCCTA
259 TAAGGAAAA-TAGGGCAAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTCATCCTA
* * * * *
3575086 ATAAGGAGAATGTGTTTATTA-TGCCTAATCACAAAATGAATGAAGATTATTACTAGAAT-CTAT
323 ATGAGGAGAATGAGTTTA-TAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATGC-AT
** ** * ** * * * *
3575149 GTTTGTCTCATTTTCGACACGAACTTACACTTTGCAATAATTAGTGGGAAGAAAGCCTTCCTTGC
386 GTTTGTCTTGTTTAAGACACGAA-TTAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGC
** *
3575214 GAAACCAAAGTGTCAATATCGTGTA
450 GAAACCAAAGCATCAATATCGTCTA
** * * *** * * *
3575239 TCCTTAGGAGAAAACTACATTTATGGTGCCTAATCCTAAAAAGAATGGGGATTGGTATGACTATT
1 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAAT-GGGATTAGTATGACTATT
* * * * * *
3575304 CTTGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATAAAAAACGGTAGAAAGAAAA-CTTGTT
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTT-TT
* * * * * *
3575368 CTTGCGACACCAAAACATCAATGACATGTATCCTAATGAAGGAAATATGTTCTTGG-TCCCAATC
129 GTTGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATC
* * * * * * * * * **
3575432 ATGAAAAGAGTGGAGA-TGGTTACGAGAATCGTTGCTTGTCTTTTTTAAAGGATGAACATTGATT
194 TTGAAAAGAATGGAGACT-ATAATGAGAATCGTTGCTTGTCATATTTAAGGGATAAATTTTGATT
* * * * * *
3575496 TTAAGGAAAATAAGGCAAAAAAAAGATTTCTATGCAAAAGAAAATTATCAATATCATTTATCCTA
258 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTCATCCTA
* * * * * *
3575561 ATAAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
323 ATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATGCATGT
* * * * * **
3575626 TTGTCTTATTTGAGGCACGAACTTAGACCTTACAAAAATTGGGGGGAAGAAAGCCTTTCTTGC-A
388 TTGTCTTGTTTAAGACACGAA-TTAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGA
** *
3575690 TAACCATGGCATCAATATCGACTA
452 -AACCAAAGCATCAATATCGTCTA
* * * * * * *
3575714 T-CTTTATGAGAAGACTATATTTGTGGTGCTTAATCCTAAAAAGAATGGGGATTAGTATGACTAT
1 TCCTTT-TGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAAT-GGGATTAGTATGACTAT
* * *
3575778 TCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGAAGCT
64 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAG--AA-AAGCT
* * * *** *
3575843 TTTCTTGCTG-CACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTCTTCATTCCA
126 TTTGTTGC-GACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCC
* * * * ** * * * *
3575907 AATCTTGAAATGAATGGAGGCTGTTACAAGAATTCATGGC-TGTCATATTTATGGGATGAATTTT
190 AATCTTGAAAAGAATGGAGACTATAATGAGAA-TCGTTGCTTGTCATATTTAAGGGATAAATTTT
* * * * * * *
3575971 GATTTTAAGAAAAATAAGGTAAAGAAAAGATTTCCATGCAAAACAAAATCTTCAATATCATTTAT
254 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTCAT
* *
3576036 CCTAATGAGGAGAATGAGTTTATACTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCC
319 CCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATGC
* * * * * * *
3576101 TTGTTTGTCTTATTTGAGGCACAAACTTAGGCTTTACAAAAATTGGT-GG--G--A-------TT
384 ATGTTTGTCTTGTTTAAGACACGAA-TTAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTT
* *
3576154 GTGAAACCAAAGCATCAATATCGTCCA
448 GCGAAACCAAAGCATCAATATCGTCTA
** * * * * * * *
3576181 TCCTCATGAGAAGACTATATTTGTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
1 TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAAT-GGGATTAGTATGACTATT
* * ** * * * *
3576246 CAAGTTTGTCTTATTTAAGGGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAACCTTTTC
65 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTG
* * * * ** * * *
3576311 TTGCAATACCAAAGCATCAATGTCATCTATCCTAACAAAGGGAATGTGTTCTTGGTTTCAAATCT
130 TTGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCT
* * * ** * * * *
3576376 TGAAAAGAATGGAGGCTGTTACAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTACTTT
195 TGAAAAGAATGGAGACTATAATGAGAATCGTTGCTTGTCATATTTAAGGGATAAATTTTGATTTT
* * * *
3576441 AAGGAAAATAGGGTAAAGAAAAGATTTTCAT-CCAAAAAAAAATCATCAATATCATTTATCCTAA
260 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCC-AAAGAAAATCATCAATATCATTCATCCTAA
* * * * * *
3576505 TGAGGAGAATGTGTTTATTA-TGCCTAATCACAAAATGAAAGAAGATCATAACTAGAATCCATGT
324 TGAGGAGAATGAGTTTA-TAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATGCATGT
** ** * * * * *
3576569 TTGTCTCATTCGAGGCACGAACTTA-CCTTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCA
388 TTGTCTTGTTTAAGACACGAA-TTAGAC-TTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCG
3576633 AAACCAAAG
451 AAACCAAAG
3576642 TGTTAATATC
Statistics
Matches: 3459, Mismatches: 269, Indels: 91
0.91 0.07 0.02
Matches are distributed among these distances:
463 6 0.00
464 266 0.08
465 6 0.00
467 130 0.04
468 3 0.00
469 1 0.00
471 191 0.06
472 110 0.03
473 101 0.03
474 175 0.05
475 2185 0.63
476 15 0.00
477 2 0.00
478 53 0.02
479 209 0.06
480 6 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
TCCTTTTGAGAAGAGTTTGTTTATGGTGCCTATTACTAAAAAGAATGGGATTAGTATGACTATTC
ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAATGGTGGAAAGAAAAGCTTTTGT
TGCGACACCAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTT
GAAAAGAATGGAGACTATAATGAGAATCGTTGCTTGTCATATTTAAGGGATAAATTTTGATTTTA
AGGAAAATAGGGCAAAGAAAAGATTTCCATGCCAAAGAAAATCATCAATATCATTCATCCTAATG
AGGAGAATGAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATGCATGTTTG
TCTTGTTTAAGACACGAATTAGACTTTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCGAAACC
AAAGCATCAATATCGTCTA
Found at i:3574684 original size:159 final size:159
Alignment explanation
Indices: 3572621--3574684 Score: 751
Period size: 159 Copynumber: 13.0 Consensus size: 159
3572611 GAATCGTTGC
* * * * *
3572621 TTGTCAAATTTAAGGGATAAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGACTTCCATGC
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGACTTTCATGC
* * * ** * *
3572685 CAAAGAAAATCATCAATATCATTCATCTTAATGAGGAGAATAAGTTTATAGTTCTTAATCACAAA
66 GAAAGAAAAGCATCAATATCATTCATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* *
3572750 ATGAATGAAGATCATTAGTTGAATGCATGT
131 ATGAATGAAGATCATTA-TAGAATGTATGT
* * * * * * * * * * *
3572780 TTGTCTTGTTTAAGACACGAATATAGACTTTAA-AAAAATTGGTAG-GAAG-AAAGCCTTTCTTG
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGT-GCAAAGAAAAGACTTTCATG
** * ** * * * * *
3572842 CGAAACCAAAGCATCAATATC-GTCTATCCTTTTGAGAAGAGTTTGTTTATGGTGCCT-ATTACT
65 CGAAAGAAAAGCATCAATATCATTC-ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-
* * * *
3572905 AAAAAGAATG-GGATTAGTAT-GACTAT-TCATGT
128 AAAATGAATGAAGATCATTATAGA--ATGT-ATGT
* * ** ** * * **
3572937 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAT-TGTGGAAAGAAAAG-CTTTTGTTG
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGAC-TTTCATG
* ** * * * * * *
3573000 CGACACCAAAGCATCAATGTCATGT-TTCCTAATGAGGGGAAGGTGTTCT-TGGCT-CCCAATCT
65 CGAAAGAAAAGCATCAATATCAT-TCATCCTAATGAGGAGAATGTGTT-TATAG-TGCCTAATC-
** * ** *
3573062 TGAAAA-GAATGGAGA-CTAAAATGAGAATCGT-TGC
126 ACAAAATGAATGAAGATC-ATTAT-AGAAT-GTATGT
* * * * *
3573096 TTGTCAAATTTAAGGGATAAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGACTTCCATGC
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGACTTTCATGC
* * * ** * *
3573160 CAAAGAAAATCATCAATATCATTCATCTTAATGAGGAGAATAAGTTTATAGTTCTTAATCACAAA
66 GAAAGAAAAGCATCAATATCATTCATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* *
3573225 ATGAATGAAGATCATTAGTTGAATGCATGT
131 ATGAATGAAGATCATTA-TAGAATGTATGT
* * * * * * * * * * *
3573255 TTGTCTTGTTTAAGACACGAATATAGACTTTAA-AAAAATTGGTAG-GAAG-AAAGCCTTTCTTG
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGT-GCAAAGAAAAGACTTTCATG
** * ** * * * * *
3573317 CGAAACCAAAGCATCAATATC-GTCTATCCTTTTGAGAAGAGTTTGTTTATGGTGCCT-ATTACT
65 CGAAAGAAAAGCATCAATATCATTC-ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-
* * * *
3573380 AAAAAGAATG-GGATTAGTAT-GACTAT-TCATGT
128 AAAATGAATGAAGATCATTATAGA--ATGT-ATGT
* * ** ** * **
3573412 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAT-GGTGGAAAGAAAAG-CTTTTGTTG
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGAC-TTTCATG
* ** * * * * * *
3573475 CGACACCAAAGCATCAATGTCATGT-TTCCTAATGAGGGGAAGGTGTTCT-TGGCT-CCCAATCT
65 CGAAAGAAAAGCATCAATATCAT-TCATCCTAATGAGGAGAATGTGTT-TATAG-TGCCTAATC-
** * * ** *
3573537 TGAAAA-GAAAGGAGA-CTAAAATGAGAATCGT-TGC
126 ACAAAATGAATGAAGATC-ATTAT-AGAAT-GTATGT
* * * * *
3573571 TTGTCAAATTTAAGGGATAAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGACTTCCATGC
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGACTTTCATGC
* * * ** * *
3573635 CAAAGAAAATCATCAATATCATTCATCTTAATGAGGAGAATAAGTTTATAGTTCTTAATCACAAA
66 GAAAGAAAAGCATCAATATCATTCATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* *
3573700 ATGAATGAAGATCATTAGTTGAATGCATGT
131 ATGAATGAAGATCATTA-TAGAATGTATGT
* * * * * * * * * * *
3573730 TTGTCTTGTTTAAGACACGAATATAGACTTTAA-AAAAATTGGTAG-GAAG-AAAGCCTTTCTTG
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGT-GCAAAGAAAAGACTTTCATG
** * ** * * * * *
3573792 CGAAACCAAAGCATCAATATC-GTCTATCCTTTTGAGAAGAGTTTGTTTATGGTGCCT-ATTACT
65 CGAAAGAAAAGCATCAATATCATTC-ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-
* * * *
3573855 AAAAAGAATG-GGATTAGTAT-GACTAT-TCATGT
128 AAAATGAATGAAGATCATTATAGA--ATGT-ATGT
* * ** ** * **
3573887 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAT-GGTGGAAAGAAAAG-CTTTTGTTG
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGAC-TTTCATG
* ** * * * * * *
3573950 CGACACCAAAGCATCAATGTCATGT-TTCCTAATGAGGGGAAGGTGTTCT-TGGCT-CCCAATCT
65 CGAAAGAAAAGCATCAATATCAT-TCATCCTAATGAGGAGAATGTGTT-TATAG-TGCCTAATC-
** * * ** *
3574012 TGAAAA-GAAAGGAGA-CTAAAATGAGAATCGT-TGC
126 ACAAAATGAATGAAGATC-ATTAT-AGAAT-GTATGT
* * * * * *
3574046 TTGACATATTTAGGGGATAAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGACTTCCATGC
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGACTTTCATGC
* * * ** * *
3574110 CAAAGAAAATCATCAATATCATTCATCTTAATGAGGAGAATAAGTTTATAGTTCTTAATCACAAA
66 GAAAGAAAAGCATCAATATCATTCATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* *
3574175 ATGAATGAAGATCATTAGTTGAATGCATGT
131 ATGAATGAAGATCATTA-TAGAATGTATGT
* * * * * * * * * * *
3574205 TTGTCTTGTTTAAGACACGAATATAGACTTTAA-AAAAATTGGTAG-GAAG-AAAGCCTTTCTTG
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGT-GCAAAGAAAAGACTTTCATG
** * ** * * * *
3574267 CGAAACCAAAGCATCAATATC-GTCTATCCTTTTGAGAAGAGTTTGTTTATAGTGCCT-ATTACT
65 CGAAAGAAAAGCATCAATATCATTC-ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-
* * * *
3574330 AAAAAGAATG-GGATTAGTAT-GACTAT-TCATGT
128 AAAATGAATGAAGATCATTATAGA--ATGT-ATGT
* * ** ** * **
3574362 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAT-GGTGGAAAGAAAAG-CTTTTGTTG
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGAC-TTTCATG
* * * * *
3574425 CGACAA-CAAAGCATCAATGTCATGT-TTCCTAATGAAGG-GAATGTGTTCT-TGGCT-CCCAAT
65 CGA-AAGAAAAGCATCAATATCAT-TCATCCTAATG-AGGAGAATGTGTT-TATAG-TGCCTAAT
** * * *
3574485 CTTGAAAA-GAATGGAGA-CTATGATGAGAATTGT-TGC
125 C-ACAAAATGAATGAAGATC-ATTAT-AGAA-TGTATGT
* * * *
3574521 TTGTCATATTTAGGGGACAAATTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGATTTTCATGC
1 TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGACTTTCATGC
* *
3574585 GAAAGAAAATCATCAATATCATTCATCCTAATGAGGAGAATGTGCTTATAGTGCCTAATCACAAA
66 GAAAGAAAAGCATCAATATCATTCATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
*
3574650 ATGATTGAAGATCATTACTAGAATGTATGT
131 ATGAATGAAGATCATTA-TAGAATGTATGT
3574680 TTGTC
1 TTGTC
3574685 TTGTTTGAGA
Statistics
Matches: 1355, Mismatches: 418, Indels: 264
0.67 0.21 0.13
Matches are distributed among these distances:
155 8 0.01
156 8 0.01
157 191 0.14
158 530 0.39
159 579 0.43
160 27 0.02
161 12 0.01
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (159 bp):
TTGTCATATTTAAGAGACAAATTTTGATTTTAAGAAAAATAGGTGCAAAGAAAAGACTTTCATGC
GAAAGAAAAGCATCAATATCATTCATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
ATGAATGAAGATCATTATAGAATGTATGT
Found at i:3577064 original size:405 final size:409
Alignment explanation
Indices: 3576251--3577064 Score: 1067
Period size: 405 Copynumber: 2.0 Consensus size: 409
3576241 CTATTCAAGT
* * ** * *
3576251 TTGTCTTATTTAAGGGACAAACTTTGATTTTATCGAAAACGGTGGAAAGAAAACCTTTTCTTGCA
1 TTGTCTTATTTAAGAGAAAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAACCTTTTCTTGCA
*
3576316 ATACCAAAGCATCAATGTCATCTATCCTAACAAAGGGAATGTGTTCTTGGTTTCAAATCTTGAAA
66 ATACCAAAGCATCAATGTCATCTATCCTAACAAAGAGAATGTGTTCTTGGTTTCAAATCTTGAAA
* * * *
3576381 AGAATGGAGGCTGTTACAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTTACTTTAAGGA
131 AGAATGGAGACTATTACAAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGACTTTAAGGA
* * * *
3576446 AAATAGGGTAAAGAAAAGATTTTCATCCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGA
196 AAATAGGGCAAAGAAAAGATTTCCATCCAAAAAAAAATCATCAATATCATTGATCCTAATGAAGA
3576511 GAATGTGTTTATTATGCCTAATCACAAAATGAAAGAAGATCATAACTAGAATCCATGTTTGTCTC
261 GAATGTGTTTATTATGCCTAATCACAAAATGAAAGAAGATCATAACTAGAATCCATGTTTGTCTC
*
3576576 ATTCGAGGCACGAACTTACCTTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAA
326 ATTCGAGGCACGAACTTACCTTTTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCAAAACCAAA
* *
3576641 GTGTTAATATCTTGTATCC
391 GTGTCAATATCGTGTATCC
**
3576660 TTGTCTT-TTTAAGAGAAAAACTTTGATTCCATCAAAAACAGTGGAAA-AAAACCTTTTCTTGTG
1 TTGTCTTATTTAAGAGAAAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAACCTTTTCTTGCA
* * **
3576723 ATGCCAAAGCATCAGTGTCATCTATCCTAA-AGAAGAGAATGTGTTCTTGG-TTCCGATCTTGAA
66 ATACCAAAGCATCAATGTCATCTATCCTAACA-AAGAGAATGTGTTCTTGGTTTCAAATCTTGAA
* *** *
3576786 AAGAGTGGAGACTATTATGGGAAAT-GATGC-TG-CAGTTTTTAAGGG-TGGAACTTTGA-TTCT
130 AAGAATGGAGACTATTACAAG-AATCGATGCTTGTCA-TATTTAAGGGAT-GAACTTTGACTT-T
* * * *
3576846 ATGGAAAATTGGGCAAAGAAAAGATTTCCATGCTAAAAAAAATCATCAATATCATTGATCCTAAT
191 AAGGAAAATAGGGCAAAGAAAAGATTTCCATCCAAAAAAAAATCATCAATATCATTGATCCTAAT
* * * *
3576911 GAA-AGGAATGTGTTTA-TAGTGCCTAATTACAAAATGAATGAAGATCATTATTAGAATCCATGT
256 GAAGA-GAATGTGTTTATTA-TGCCTAATCACAAAATGAAAGAAGATCATAACTAGAATCCATGT
* * * * * * *
3576974 TTGTCTCATTTGTGGCTCGATCTTACAC-TTTGCAAAAATTGGTGGGAAGAAGGCCTTCCTTGCG
319 TTGTCTCATTCGAGGCACGAACTTAC-CTTTTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCA
*
3577038 AAACTAAAGTGTCAATATCGTGTATCC
383 AAACCAAAGTGTCAATATCGTGTATCC
3577065 ATATGTGAAG
Statistics
Matches: 352, Mismatches: 45, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
404 8 0.02
405 208 0.59
406 33 0.09
407 62 0.18
408 34 0.10
409 7 0.02
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (409 bp):
TTGTCTTATTTAAGAGAAAAACTTTGATTCCATCAAAAACAGTGGAAAGAAAACCTTTTCTTGCA
ATACCAAAGCATCAATGTCATCTATCCTAACAAAGAGAATGTGTTCTTGGTTTCAAATCTTGAAA
AGAATGGAGACTATTACAAGAATCGATGCTTGTCATATTTAAGGGATGAACTTTGACTTTAAGGA
AAATAGGGCAAAGAAAAGATTTCCATCCAAAAAAAAATCATCAATATCATTGATCCTAATGAAGA
GAATGTGTTTATTATGCCTAATCACAAAATGAAAGAAGATCATAACTAGAATCCATGTTTGTCTC
ATTCGAGGCACGAACTTACCTTTTACAAAAATTGGTGGGAAGAAAGCCTTCCTTGCAAAACCAAA
GTGTCAATATCGTGTATCC
Found at i:3577793 original size:475 final size:475
Alignment explanation
Indices: 3576660--3583681 Score: 7514
Period size: 475 Copynumber: 14.7 Consensus size: 475
3576650 TCTTGTATCC
* * * *
3576660 TTGTCTT-TTTAAGAGAAAAACTTTGATTCCATCAAAAACAGTGGAAA-AAAACCTTTTCTTGTG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCG
** * * * * *
3576723 ATGCCAAAGCATCAGTGTCATCTATCCTAAAGAAGAGAATGTGTTCTTGGTTCC-GATCTTGAAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAA
* ** * * * *
3576787 AGAGTGGAGACTATTATGGGAAATGATGC-TG-CAGTTTTTAAGGG-TGGAACTTTGATTCTATG
131 AGAATGGAGACTATTATAAG-AATCATGCTTGTCA-TATTTAAGGGAT-GAACTTTGATTTTAAG
* *
3576849 GAAAATTGGGCAAAGAAAAGATTTCCATGCTAAAA-AAAATCATCAATATCATTGATCCTAATGA
193 GAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGA
* * *
3576913 -AAGGAATGTGTTTATAGTGCCTAATTACAAAATGAATGAAGATCATTATTAGAATCCATGTTTG
257 GGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * * *
3576977 TCTCATTTGTGGCTCGATCTTA-CACTTTGCAAAAATTGGTGGGAAGAAGGCCTTCCTTGCGAAA
321 TCTTATTTGAGGCACGAACTTAGC-CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
* * * *
3577041 CTAAAGTGTCAATATCGTGTATCCATATGTGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
385 CCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
* *
3577106 ATGGGGATTGGTATGACTATTCTTGT
450 ATGGGGATTAGTATGACTATTCATGT
* * * * * *
3577132 TTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGTTGGAAAGAAAACCTGTTATTGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCG
* * * * *
3577197 ACACTAAATCATTAATGTCATGTATCGTAATGAAGGGAATGTGTTCTTGG-CCCAAATCTTGAAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAA
* * * * * * * *
3577261 ACATTGGGGACTACTATGAGAATCGATGCTTGACATATTTAATGGATGAATTTTGATTTTAAGGA
131 AGAATGGAGACTATTATAAGAATC-ATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGA
* * * *
3577326 AAGTAAGGCAAAGAAAAGATTTGCATGCTAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
195 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * *
3577391 CAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTATCTC
260 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTT
* * *
3577456 ATTTGAGGCACGAACTTATCCTTTACAAAAGTTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAA
325 ATTTGAGGCACGAACTTAGCCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAA
* *
3577521 GCGTCAATATCGTGTATCCTTGTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
390 GCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGG
3577586 GATTAGTATGACTATTCATGT
455 GATTAGTATGACTATTCATGT
* * * * *
3577607 TTGTCTTATTTAAGAGATAAACATTT-ATTCCATCAAAAACGGGGGAAAGAAAACTTTTTCTTAC
1 TTGTCTTATTTAAGAGACAAAC-TTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGC
* * * * * *
3577671 AACGCTAAAGCATCAATGTCATGTTTCCTAATGAACGGAATGTGTTCTTGGCTCTC-AATCTTGA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTC-CAAATCTTGA
* ** * *
3577735 AAAGAATGGAGCCTACGATAAGAATCATTGCTTGTCATATTTAAGGGACGGA-TTTGATTTTAAG
129 AAAGAATGGAGACTATTATAAGAATCA-TGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAG
* * *
3577799 GAAAATAGTGCAAAGAAAAGATTTCCTTGTC-AAAGAAAATGATCAATATCATTTATCCTAATGA
193 GAAAATAGGGCAAAGAAAAGATTTCCATG-CAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * * *
3577863 GGAGAATGAGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATGCATGTTTAT
257 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * * *
3577928 CTTATTTGAGACACGAATTTAGAC-TTAAAAAAATTGGTAGGAAGAAAGCCTTTCTTGCAAAACC
322 CTTATTTGAGGCACGAACTTAGCCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC
* * * * * * *
3577992 AAAGTGTCAATATCCTGTATCCTTTTGGGAAGAGTTTGTTTATGGTGCGTAATCCTAAAAAGAAT
387 AAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT
3578057 -GGGATTAGTATGACTATTCATGT
452 GGGGATTAGTATGACTATTCATGT
* * *
3578080 TTGTCTTATTTAAGAGATAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAACCTTTTCTAGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCG
* * * * *
3578145 ACACCAAAGCATCGATGTCATCTATCCTAAAGAAGGGAATGTGTTCTTGATTCCCAATCTTGAAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAA
* * * * * * *
3578210 AGAGTGGAGACTGTTATAAGAAATGATGCTTGTCTTTTTTCAGGG-TGGAACTTTGATTTTATGG
131 AGAATGGAGACTATTATAAG-AATCATGCTTGTCATATTTAAGGGAT-GAACTTTGATTTTAAGG
* * * * * * *
3578274 AAAATTGGGCAATGAAAAAGATTTCCAGGCTAAAGAAAATCATTAATATCATTTATCCTATTAAG
194 AAAATAGGGCAAAG-AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* *
3578339 GAGAATGTGTTTACAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGAC
258 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * * ** * *
3578404 TCATTTGTGCCACAAACTT-GCACTTCGCAAAAATTGGTGGGAAGAAAGCCTTCCTTGCTAAACC
323 TTATTTGAGGCACGAACTTAGC-CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC
* ** * *
3578468 AAAGTGTCAATATTATGTATCCTTATGAGAAGACTATGATTATAGTGCCTAATCCTAAAAAGAAT
387 AAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT
** * *
3578533 GGGCCTTGGTATGACTATTCTTGT
452 GGGGATTAGTATGACTATTCATGT
* *
3578557 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTATTCTTGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCG
* * * * * *
3578622 ACAGCAAAACATCAATGACATGTGTCCTAATGAAGGGAATGTGTTCTTGGTCCCCAATCTTGAAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAA
* ** * * * * *
3578687 AGAGT-G-G----TTACGAGAATCGTTGCTTGTCTTTTTTAAAGGATGAACATTGATTTTAAGGA
131 AGAATGGAGACTATTATAAGAATC-ATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGA
* * *
3578746 AAATAAGGCAAAGAAAAGATTTCTATGCAAAAGAAAAAT-ACCAATATCATTTATCCTAATGAGG
195 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAG-AAAATCATCAATATCATTTATCCTAATGAGG
*
3578810 AGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
259 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* **
3578875 TATTTGAGGCACGAACTTAGACC-TTACAAAACTTGGAAGGAAGAAAGCCTTTCTTGCGAAACCA
324 TATTTGAGGCACGAACTTAG-CCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCA
* * * * *
3578939 AAGCATTAATATCATCTATCCTTATGAGAAGACTATGTTTGTGGTGCCTAAT-CTAGAAAAGAAT
388 AAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAAT
*
3579003 GGGGATTAGTATGACTATTCAAGT
452 GGGGATTAGTATGACTATTCATGT
* * * * *
3579027 TTGTCTTATTTAAGAGATAAACTTTGATTCT-TAAAAAACGGTGGAAAGAAAAGCGTTTCTTGCA
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCG
* *
3579091 ACACCAAAGCATCAATGTTATGTATCCTAATGAAGGGAATGTGTTCTTGGCTCCAAATCTTGAAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAA
* ** * ** * ** * *
3579156 AGAATGGA-ACTGTTACGAGAGTCAACACCTGTCATATTTATCGGATTAATTTTG-TTTTCAAGG
131 AGAATGGAGACTATTATAAGAATC-ATGCTTGTCATATTTAAGGGATGAACTTTGATTTT-AAGG
** * *
3579219 AAAATAGGGCAAAGAAAAGATTTGTATGCAAAA-AAAATCATCAATCTCATTTATCCTGATGAGG
194 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
*
3579283 AGAATGTGTTTATTA-TGCCTAATCACAAAATGAAAGAAGATCATTACTAGAAT-CATGTTTGTC
259 AGAATGTGTTTA-TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * **
3579346 TTATTTGAGGCACAAACTTAGACTTTACAAAAATTGGCAGGAAGAAAGCCTTTCTTGC---A--A
323 TTATTTGAGGCACGAACTTAGCCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCA
* *
3579406 AA-C--CAA-AGCGT-TA-----A-G-G-AGACTATGTTTATGGTGCCTAATCC-AAAAAAAATG
388 AAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATG
3579457 GGGATTAGTAT-ACCTATTCATGT
453 GGGATTAGTATGA-CTATTCATGT
* *
3579480 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTTGAAAAAAAACCTTTTCTTGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCG
* ** * *
3579545 ACCCCAAAGCATCAATGTCATCAATCCTAATGAAGGGATTGAACT-TTACAAGTATCGATGTCAT
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG---TGTT-C---T-T-GGT-TC--
*** * ** * * *** * *** * *
3579609 CAATGTCATCAATCCCAAAGCATCAATGTC-ATCAATCCCAATCTTGAAAAAAGTAGAGACTGTT
119 CAA----ATC--TTGAAAAGAATGGA-GACTAT-TATAAGAATCATG---CTTGT-CATA-T-TT
* * * * * ** *
3579673 ACAAGAATCGATGCTTGTCATTTTGGGGGATGAACTTTGGTTTTAAGGTAAATAAGGTGAAGAAC
170 A-AGGGAT-GA-ACTT-TGA-TTT------T-AA----GG-----A---AAATAGGGCAAAGAAA
* **
3579738 AGATTTTCGCGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
211 AGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
3579803 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTTTCTTTTTTGAGGCAAGAACT
276 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACT
** * * * *
3579868 TAAACTTTGCAAAAATTGATAGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTA
341 TAGCCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTA
* *
3579933 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGAATAGTATGACTATT
406 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATT
*
3579998 CATGA
471 CATGT
* * *
3580003 TTG--TTATTTATGAGACAAACATTGACTCTATCGAAAAA-GGTGGAAAGAAAACCTTTTCTTGC
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAACCTTTTCTTGC
* * * * * * *
3580065 AATACCAAAGCACCCATGTCATGTATCCTAATGAAGGAAATGTGTTCTTGGCTCCCAATCTTGAA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAA
*** * * *
3580130 ATA-AATGGAGACTGCAATGAGAATCGACGCTTGTCATATTTAAGGGATGAATTTTG-TTTTCAA
130 A-AGAATGGAGACTATTATAAGAATC-ATGCTTGTCATATTTAAGGGATGAACTTTGATTTT-AA
* * * *
3580193 GGAAAATAGGGCAAAGGAAAGACTTT-CATGCAAATGTAAATCATTC-ATATCATTTATCTTAAT
192 GGAAAATAGGGCAAAGAAAAGA-TTTCCATGCAAAAGAAAATCA-TCAATATCATTTATCCTAAT
* * * * * * * * *
3580256 GAGGGGAATTTGTTTATAGTGCCCAATAACTAAATTAAAGAAGATCTTTACTGGAATCCATGTTT
255 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * * * * *
3580321 GCCTCATTTGAGGCAGGAACTTAGACTTTACAAAAATTGTTGGGAAGAAAGCATTCCTAGCAAAA
320 GTCTTATTTGAGGCACGAACTTAGCCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
** * * *
3580386 CCAAAGCGTCAATATAATCTATCTTTATGAGGAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
385 CCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
* * *
3580451 ATAGGGATTAGTATAACTATTTATGT
450 ATGGGGATTAGTATGACTATTCATGT
* * * * *
3580477 TTGTCTCT-TTTAAGAGACAAACTTTGATTCTATAAAAAACGATTGAAAAAAAAACCTTTTCTTA
1 TTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAACG-GTGGAAAGAAAACCTTTTCTTG
* * ** * *
3580541 TGAC-CCTAAAGCATCAATGCCATCAATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTT
64 CGACACC-AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATC-TT
* * ** * * *
3580605 G-AAAGAGTGGAGACTGTTATTGGAATCGATGCTTGTCATTTTTAGGGGATGAACTTTTATTTTA
127 GAAAAGAATGGAGACTATTATAAGAATC-ATGCTTGTCATATTTAAGGGATGAACTTTGATTTTA
* * * *
3580669 AGGTAAATAGGG-AAAGGAACAGAGTTT-CGTGCAAAAGAAAATCATCAGTATCATTTATCCTAA
191 AGGAAAATAGGGCAAA-GAAAAGA-TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* * * ** * *
3580732 TGAGGCGAATATGTTTATAGTGCCTCATTGCAAAATGAGTGGAGATCATTACTAGAATCCATGTT
254 TGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * * *
3580797 TTTCTTTTTTGAGGCACGAACTTAGGCTTTACAAAAATTGGTGGGATGAAAGCCATTCTTGCGAA
319 TGTCTTATTTGAGGCACGAACTTAGCCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAA
* * * * * * **
3580862 ACCAAAGCATTAATATCATATATCCTTATGAGAAGACTATATTCATGGCACCTAATCCTAAAAAG
384 ACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAG
*** *
3580927 AGCAGGGATTAGTATGACTATTCATTT
449 AATGGGGATTAGTATGACTATTCATGT
* * * * *
3580954 TTGTTTTATTTAGGGGACAAACTTTGATTCTACCAAAAACGATGGAAAGAAAACC-TTTCTTGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCG
* * *
3581018 ACGCCAAAGCATCAATGTCATGTATCCTAATGAATGGAATGTGTTCTTAGTTCCAAATCTTGAAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAA
* * ** *
3581083 TGAATGGAGACTGTTACGAGAATCCATGCTTGTCATATTTAAGGGAAGAACTTTGATTTTAAGGA
131 AGAATGGAGACTATTATAAGAAT-CATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGA
* *
3581148 AAATAGGGCAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGA
195 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * * *
3581213 GAATGTGTTTATAGTTCATAATCACAAAATAAATGAAGACCATTACTAGAATCCATGTTTGTCTC
260 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTT
* * * * *
3581278 ATTTGAGACATGAACTTAGACTTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGTGAAACCAA
325 ATTTGAGGCACGAACTTAG-CCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAA
* * * * * * *
3581343 AGTGTCAAATATCGTGTATCCTTGTGAGAAAACTATGTTTATGGTGTCTTATCTTGAAAAGAATG
389 AGCGTC-AATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATG
* *
3581408 GGGATTAGTATCACTATTCATTT
453 GGGATTAGTATGACTATTCATGT
* * *
3581431 TTGTCTTATTAAAGACACAAACTTTGATTCTATCAAACAA-GGTGGAAAGAAAAGCTTTTCTTGC
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA-AACGGTGGAAAGAAAACCTTTTCTTGC
* * * * *
3581495 GACACCAAAGCATTAATGTCCTGTATCCTAATAAAGGGAACGTGGTCTTGGTTCCAAATCTTGAA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAA
* ** * *
3581560 AAGAATGGAGGC-AGTTACGAGAATCGATGCCTGTCATATTTAAAGGATGAA-TTCTGATTTTAA
130 AAGAATGGAGACTA-TTATAAGAATC-ATGCTTGTCATATTTAAGGGATGAACTT-TGATTTTAA
* * *
3581623 GGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCAGCAATGTCATTTATCCTAATGA
192 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * ** *
3581688 GGAGAATGAGTTTATAGTTCTTAATTGCAAAATGAATGAAGATCATTACTAGAATCCATATTTGT
257 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * *
3581753 CTTATTTGAGGCAC-AAATATAGACATTACAAAAATTGGTGGGAAGAAAGCCTTCCTAGCGAAAC
322 CTTATTTGAGGCACGAACT-TAGCCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* * * * * *
3581817 CAAAGTGTCAATATAGTGTATCTTTATGAAAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAA
386 CAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
3581882 TGGGGATTAGTATGACTATTCATGT
451 TGGGGATTAGTATGACTATTCATGT
* * ** ** *
3581907 TTGTCTTATTCAAGAGACAAACTTTGATTCTCTCAAAATTGGTGGAAAGAAAGGCTTTTCTTGCA
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCG
* * * * * *
3581972 ACATCTAAGCATCAATGTCATGTATCTTATTGAAAGAAATGTGTTCTTGGTTCCAAATCTTGAAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAA
* * * * * * * *
3582037 ATAATGGAGACTGTTATGAGAATTAATGCTTGTCATAGTTATGGGATTAATTTTG-TTTTCAAGG
131 AGAATGGAGACTATTATAAGAA-TCATGCTTGTCATATTTAAGGGATGAACTTTGATTTT-AAGG
** * * * *
3582101 AAAATTTGGCAAAGAAAATATTTCCTTACAAAAGAAAATCATCAATATCATTTATCTTAATGAGG
194 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
** * *
3582166 AGAATGTGTTTATTTTGCTTAATCACAAAATGAAAGAAGATCATTACTAGAAT-CATGTTTGTCT
259 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * **
3582230 TTTTTGAGGCACAAACTTAGACTTTACAAAAATTGGTAAGAAGAAAGCCTTTCTTGCGAAACCAA
324 TATTTGAGGCACGAACTTAGCCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAA
* * * * *
3582295 AGCGTTAATATAGTGTATCTTTATGAGAAGACTATGTTTATGGTTCCTAATCCTGAAAAGAATGG
389 AGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGG
*
3582360 GGTTTAGTATGACTATTCATGT
454 GGATTAGTATGACTATTCATGT
* * * **
3582382 TTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAGCGGTGGAAAGCAAGGCTTTTCTTGCG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCG
*
3582447 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTCTTGGTTCCAAATCTTGAAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAA
* * * *
3582512 AGAATGGAGACTGTTATGAGAATTAATGCTTGTCATATTTATGGGATG-ACTTTTG-TTTTCAAG
131 AGAATGGAGACTATTATAAGAA-TCATGCTTGTCATATTTAAGGGATGAAC-TTTGATTTT-AAG
*
3582575 GAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
193 GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * * *
3582640 TAGAATGTGTTTATTGTGCCTAATCACAAAATGAAAGAAGATCTTTACTAGAATCCATGTTTGTC
258 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * * * * *
3582705 TCATTTGAGGGATGAACTTA-CACTTTACAAAAATTGGTTGGAAGAAAGCCCTTCTTGTGAGACC
323 TTATTTGAGGCACGAACTTAGC-CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC
* * * *
3582769 AAAGCGTCAATATCGTGCATCCTTATGAGAAGATTATGTTTATGGAGCCTAATCCTGAAAAGAAT
387 AAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT
*
3582834 AGGGATTAGTATGACTACTT-ATGT
452 GGGGATTAGTATGACTA-TTCATGT
* * * * * *
3582858 TTGTCTTATTTAAGAGACAAACTTTGATTTTATTAAAAATGATGGAAAGAAATCCTTTTCTTGTG
1 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCG
* * *
3582923 ACACCAAAGTATCAATATCATGTATCTTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAA
66 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAA
* * * ** * ** *
3582988 ATAATAGCGGTTGTTACGAGAATCGATGCTTGTCATATTTAAGGGAAGAACTTTGATTTTAAGGA
131 AGAATGGAGACTATTATAAGAATC-ATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGA
* *
3583053 AAATAGGGCAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAGGA
195 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * * * *
3583118 GAATGTGTTTATAGTTCATAATCACAAAATAAATGAAGACCATTACTAGAATCCATGTTTATCTT
260 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTT
* * * * * * * *
3583183 GTTTGGGGCACGAACTTAGACTTTTATAATAATTGGTGAGAAGAAAGCCTTTCTTGCGAAATCGA
325 ATTTGAGGCACGAACTTAG-CCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAA
* * * * * * * * *
3583248 ACCATCAATATCATTTATCCTTATGAGAAGACTATGTTTGTGGTGCCTAATCCTGAAAATAGT-A
389 AGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGG
* *
3583312 AGA--AGTATGACTATTCAAGT
454 GGATTAGTATGACTATTCATGT
* * ** * * *
3583332 TTGTCTTA-TTATAGTGACAAACTTTGATTCTATCAAAAATGGCAGAAAGAGAAGCTTTTCTTGT
1 TTGTCTTATTTA-AGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGC
* * *
3583396 GACACCAAAGCATCAATGTCATGTATCCAAATGAATGGAACGTGTTCTTGGTTCCAAATCTTGAA
65 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAA
* * * * * * * * * *
3583461 AACAATAGAGACTGTTATGAGAATCGATGCTTGTCATAATTAAAGAAAGAATTTTGATCTTAAGG
130 AAGAATGGAGACTATTATAAGAATC-ATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGG
* * * * * **
3583526 AAAATGGGGCAAACAAAAGTTTTCCATGGAAAAGAAAATCATCAATATCATTTATCATAAAAAGG
194 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * *
3583591 AGAATGTGTTTATAGTTCTTAATCACAAAATGGAA-GAAGATCATTACTAGAATCCATTTTTGTC
259 AGAATGTGTTTATAGTGCCTAATCACAAAAT-GAATGAAGATCATTACTAGAATCCATGTTTGTC
* *
3583655 TTATTTGAGGCACGAAGTTAGACTTTA
323 TTATTTGAGGCACGAACTTAGCCTTTA
3583682 TGAGAAGACT
Statistics
Matches: 5526, Mismatches: 856, Indels: 335
0.82 0.13 0.05
Matches are distributed among these distances:
452 1 0.00
453 58 0.01
454 86 0.02
455 2 0.00
456 3 0.00
457 3 0.00
460 1 0.00
461 1 0.00
462 3 0.00
463 5 0.00
464 2 0.00
465 3 0.00
466 1 0.00
467 3 0.00
469 95 0.02
470 253 0.05
471 64 0.01
472 80 0.01
473 294 0.05
474 820 0.15
475 1308 0.24
476 1008 0.18
477 774 0.14
478 263 0.05
479 3 0.00
480 1 0.00
481 2 0.00
482 3 0.00
484 3 0.00
486 3 0.00
490 3 0.00
492 3 0.00
494 3 0.00
495 2 0.00
496 2 0.00
497 4 0.00
498 3 0.00
499 2 0.00
500 2 0.00
501 2 0.00
502 26 0.00
503 87 0.02
504 67 0.01
505 1 0.00
506 3 0.00
507 1 0.00
509 3 0.00
510 3 0.00
512 5 0.00
513 5 0.00
514 3 0.00
515 1 0.00
518 2 0.00
519 3 0.00
520 1 0.00
521 82 0.01
522 30 0.01
523 30 0.01
524 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (475 bp):
TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCG
ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAA
AGAATGGAGACTATTATAAGAATCATGCTTGTCATATTTAAGGGATGAACTTTGATTTTAAGGAA
AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTA
TTTGAGGCACGAACTTAGCCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAG
CGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGG
ATTAGTATGACTATTCATGT
Found at i:3579636 original size:23 final size:23
Alignment explanation
Indices: 3579606--3579649 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
3579596 GTATCGATGT
3579606 CATCAATGTCATCAATCCCAAAG
1 CATCAATGTCATCAATCCCAAAG
3579629 CATCAATGTCATCAATCCCAA
1 CATCAATGTCATCAATCCCAA
3579650 TCTTGAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.39, C:0.32, G:0.07, T:0.23
Consensus pattern (23 bp):
CATCAATGTCATCAATCCCAAAG
Found at i:3582471 original size:159 final size:158
Alignment explanation
Indices: 3580830--3583422 Score: 548
Period size: 159 Copynumber: 16.4 Consensus size: 158
3580820 AGGCTTTACA
* * ** * * * *
3580830 AAAATTGGTGGGATG-AAAGCCATTCTTGCGAAACCAAAGCATTAATATCATATATCCTTATGAG
1 AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATGAG
* * ** * *** * *
3580894 AAGACTATATTCATGGCACCTAATCCTAAAAAGAGCAGGGATTAGTATGACTATTCATTTTTGTT
66 AAGACTATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * *
3580959 TTATTTAGGGGACAAACTTTGATTCTACC
131 TTATTTAAGAGACAAACTTTGATT-TATC
** * * * ** * * *
3580988 AAAAACGATGGAAAGAAAA-CCTTTCTTGCGACGCCAAAGCATCAATGTCATGTATCCTAATGA-
1 AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATGAG
* * * * * * * * * * ** * *
3581051 ATGGAATGTGTTCT-TAGTTCCAAATCTTGAAATGAATGGAGACT-GTTACGAGAATCCATGCTT
66 A-AGACTATGTT-TATGGTTCCTAATCCTGAAAAGAATGGGGATTAG-TATGACTATTCATGTTT
* * **
3581114 GTCATATTTAAGGGA-AGAACTTTGATTTTAAGG
128 GTCTTATTTAAGAGACA-AACTTTGA-TTT-ATC
* * * * ** * * * * *
3581147 AAAATAGG-GCAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAG
1 AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATGAG
* * * * * * ** * *
3581211 GAGAATGTGTTTATAGTTCATAATCAC--AAAATAAATGAAGACCATTACTA-GA--ATCCATGT
66 AAGACTATGTTTATGGTTCCTAATC-CTGAAAA-GAATG--G-GGATTAGTATGACTATTCATGT
* *
3581271 TTGTCTCATTT--GAGACATGAACTTAGACTTT-TAC
126 TTGTCTTATTTAAGAGACA--AACTTTGA-TTTAT-C
* ** ** * * *
3581305 AAAAATTGGT-GAGAAG-AAAGCCTTTCTTGTGAAACCAAAGTGTCAAATATCGTGTATCCTTGT
1 -AAAATTGGTGGA-AAGAAAAGCTTTTCTTGCAAAACCAAAGCATC-AATATCATGTATCTTTAT
* * * * *
3581368 GAGAAAACTATGTTTATGGTGT-CTTATCTTGAAAAGAATGGGGATTAGTATCACTATTCATTTT
63 GAGAAGACTATGTTTATGGT-TCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
* *
3581432 TGTCTTATTAAAGACACAAACTTTGATTCTATC
127 TGTCTTATTTAAGAGACAAACTTTGATT-TATC
* * * * * * * *
3581465 AAACA-AGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATTAATGTCCTGTATCCTAAT-A
1 AAA-ATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATGA
* * * *
3581528 -AAGGGAACGT-GGTCT-TGGTTCCAAATCTTGAAAAGAATGGAGGCAGTTACG-A-GA--A-TC
65 GAA--G-AC-TATGTTTATGGTTCCTAATCCTGAAAAGAATGG-GG-A-TTA-GTATGACTATTC
** * ** **
3581585 GATGCCTGTCATATTTAA-AGGATGAA-TTCTGATTTTAAGG
122 -ATGTTTGTCTTATTTAAGA-GACAAACTT-TGA-TTT-ATC
* * * * * * ** * * * * * *
3581625 AAAATAGG-GCAAAGAAAAGATTTCCATGTAAAAGAAAATCAGCAATGTCATTTATCCTAATGAG
1 AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATGAG
* * * * ** * * * *
3581689 GAGAATGA-GTTTATAGTTCTTAAT--TGCAAAATGAATGAAGATCATTACTAGA--ATCCATAT
66 AAGACT-ATGTTTATGGTTCCTAATCCTG-AAAA-GAATGGGGATTAGTA-T-GACTATTCATGT
* * *
3581749 TTGTCTTATTTGAG-GCACAAA-TATAGACATTA-C
126 TTGTCTTATTTAAGAG-ACAAACT-TTGA-TTTATC
* * * * * **
3581782 AAAAATTGGTGGGAAG-AAAGCCTTCCTAGCGAAACCAAAGTGTCAATAT-AGTGTATCTTTATG
1 -AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCA-TGTATCTTTATG
* * *
3581845 AAAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
64 AGAAGACTATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
* *
3581910 TCTTATTCAAGAGACAAACTTTGATTCTCTC
129 TCTTATTTAAGAGACAAACTTTGATT-TATC
* * * * *
3581941 AAAATTGGTGGAAAGAAAGGCTTTTCTTGCAACATCTAAGCATCAATGTCATGTATC-TTATTGA
1 AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTA-TGA
* * * * * * * ** * *
3582005 -AAGA-AATGTGTTCTTGGTTCCAAATCTTGAAAATAATGGAGACT-GTTATGAGAATTAATGCT
65 GAAGACTATGT-TT-ATGGTTCCTAATCCTGAAAAGAATGGGGATTAG-TATGACTATTCATGTT
* * * * ** * * **
3582067 TGTCATAGTTATGGGATTAATTTTGTTTTCAAGG
127 TGTCTTATTTAAGAGACAAACTTTGATTT--ATC
** * * ** * * *
3582101 AAAATT--TGGCAAAGAAAATATTTCCTTACAAAAGAAAATCATCAATATCATTTATCTTAATGA
1 AAAATTGGTGG-AAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATGA
* * * * * * ** * *
3582164 GGAGAATGTGTTTAT-TTTGCTTAATCAC--AAAATGAAAGAAGATCA-T-T-ACTAGAATCATG
65 GAAGACTATGTTTATGGTT-CCTAATC-CTGAAAA-GAATGGGGATTAGTATGACT--ATTCATG
* * *
3582223 TTTGTCTTTTTTGAG-GCACAAACTTAGACTTTA-C
125 TTTGTCTTATTTAAGAG-ACAAACTTTGA-TTTATC
* * * * *
3582257 AAAAATTGGT-AAGAAG-AAAGCCTTTCTTGCGAAACCAAAGCGTTAATAT-AGTGTATCTTTAT
1 -AAAATTGGTGGA-AAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCA-TGTATCTTTAT
*
3582319 GAGAAGACTATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGTTTAGTATGACTATTCATGTTT
63 GAGAAGACTATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTT
*
3582384 GTCTTATTTAAGAGATAAACTTTGATTCTATC
128 GTCTTATTTAAGAGACAAACTTTGATT-TATC
** * * * * * * *
3582416 AAAAGCGGTGGAAAGCAAGGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
1 AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATG-A
* * * * * ** * *
3582481 GGAA-A-TGTGTTCT-TGGTTCCAAATCTTGAAAAGAATGGAGACT-GTTATGAGAATTAATGCT
65 -GAAGACTATGTT-TATGGTTCCTAATCCTGAAAAGAATGGGGATTAG-TATGACTATTCATGTT
* * * ** * **
3582542 TGTCATATTTATGGGA-TGACTTTTGTTTTCAAGG
127 TGTCTTATTTAAGAGACAAAC-TTTGATTT--ATC
* * * * * ** * * * *
3582576 AAAATAGG-GTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
1 AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATGAG
* * * * * * ** * *
3582640 TAGAATGTGTTTATTGTGCCTAATCAC--AAAATGAAAGAAGATCT-TTACTAGA--ATCCATGT
66 AAGACTATGTTTATGGTTCCTAATC-CTGAAAA-GAATGGGGAT-TAGTA-T-GACTATTCATGT
* * * ** **
3582700 TTGTCTCATTTGAGGGATGAACTTACACTTTA-C
126 TTGTCTTATTTAAGAGACAAACTTTGA-TTTATC
** ** * * * * *
3582733 AAAAATTGGTTGG-AAG-AAAGCCCTTCTTGTGAGACCAAAGCGTCAATATCGTGCATCCTTATG
1 -AAAATTGG-TGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATG
* ** *
3582796 AGAAGATTATGTTTATGGAGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTACTT-ATGTTT
64 AGAAGACTATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA-TTCATGTTT
*
3582860 GTCTTATTTAAGAGACAAACTTTGATTTTATT
128 GTCTTATTTAAGAGACAAACTTTGA-TTTATC
* * ** ** * * *
3582892 AAAAATGATGGAAAGAAATCCTTTTCTTGTGACACCAAAGTATCAATATCATGTATCTTAATGA-
1 AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATGAG
* * * * * * * * * * *
3582956 AGGGAATGTGTTCT-TGGTTCCAAATCTTGAAAATAATAGCGG-TT-GTTACGA-GAATCGATGC
66 A-AGACTATGTT-TATGGTTCCTAATCCTGAAAAGAAT-GGGGATTAG-TATGACTATTC-ATGT
* * **
3583017 TTGTCATATTTAAGGGA-AGAACTTTGATTTTAAGG
126 TTGTCTTATTTAAGAGACA-AACTTTGA-TTT-ATC
* * * * ** * * * * *
3583052 AAAATAGG-GCAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATGTCATTTATCCTAATGAG
1 AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATGAG
* * * * * * ** * *
3583116 GAGAATGTGTTTATAGTTCATAATCAC--AAAATAAATGAAGACCATTACTA-GA--ATCCATGT
66 AAGACTATGTTTATGGTTCCTAATC-CTGAAAA-GAATG--G-GGATTAGTATGACTATTCATGT
* * * * * *
3583176 TTATCTTGTTT-GGGGCACGAACTTAGACTTTTAT-
126 TTGTCTTATTTAAGAG-ACAAACTTTGA--TTTATC
* * * * * * *
3583210 AATAATTGGT-GAGAAG-AAAGCCTTTCTTGCGAAATCGAACCATCAATATCATTTATCCTTATG
1 AA-AATTGGTGGA-AAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATG
* * * * ** *
3583273 AGAAGACTATGTTTGTGGTGCCTAATCCTGAAAATAGT-AAGA--AGTATGACTATTCAAGTTTG
64 AGAAGACTATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTG
*
3583335 TCTTA-TTATAGTGACAAACTTTGATTCTATC
129 TCTTATTTA-AGAGACAAACTTTGATT-TATC
* ** * ** * *
3583366 AAAAATGGCAGAAAGAGAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTATC
1 AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATC
3583423 CAAATGAATG
Statistics
Matches: 1725, Mismatches: 532, Indels: 358
0.66 0.20 0.14
Matches are distributed among these distances:
153 3 0.00
154 4 0.00
155 14 0.01
156 67 0.04
157 107 0.06
158 468 0.27
159 854 0.50
160 167 0.10
161 23 0.01
162 17 0.01
163 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (158 bp):
AAAATTGGTGGAAAGAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCTTTATGAG
AAGACTATGTTTATGGTTCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTTATC
Found at i:3584030 original size:411 final size:411
Alignment explanation
Indices: 3583268--3584092 Score: 1077
Period size: 411 Copynumber: 2.0 Consensus size: 411
3583258 TCATTTATCC
* * *
3583268 TTATGAGAAGACTATGTTTGTGGTGCCTAATCCTGAAAATAGTAAGAAGTATGACTATTCAAGTT
1 TTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAAGAAGTATGACTATTCAAGTT
** * * * * * *
3583333 TGTCTTATTATAGTGACAAACTTTGATTCTATCAAAAATGGCAGAAAGAGAAGCTTTTCTTGTGA
66 TGTCTTATTATAAAGACAAACTTTAATTCTATCAAAAACGGCAGAAAGAAAACCTTTTCTTATAA
* * *
3583398 CACCAAAGCATCAATGTCATGTATCCAAATGAATGGAACGTGTTCTTGGTTCCAAATCTTGAAAA
131 CACCAAAGCATCAATGTCATGTATCCAAATGAAGGGAACGTGGTCTTGCTTCCAAATCTTGAAAA
** *
3583463 CAATAGAGACTGTTATGAGAATCGATGCTTGTCATAATTAAAGAAAGAATTTTGATCTTAAGGAA
196 CAATAGAGACTGCGACGAGAATCGATGCTTGTCATAATTAAAGAAAGAATTTTGATCTTAAGGAA
* * * *
3583528 AATGGGGCAAACAAAAGTTTTCCATGGAAAAGAAAATCATCAATATCATTTATCATAAAAAGGAG
261 AATAGGGCAAAAAAAAGTTTTCCATGCAAAAGAAAACCATCAATATCATTTATCATAAAAAGGAG
* * * *
3583593 AATGTGTTTATAGTTCTTAATCACAAAATGGAA-GAAGATCATTACTAGAATCCATTTTTGTCTT
326 AATGTGTTTATAGTGCCTAATCACAAAAT-GAACGAAGATCATTACTAGAATCCATGTTTGTCTC
* *
3583657 ATTTGAGGCACGAAGTTAGACT
390 ATTTGAGCCACGAACTTAGACT
* ** * * * *
3583679 TTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTA-GTATTATTCATGT
1 TTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAAGAAGTATG-ACTATTCAAGT
**
3583743 TTGTCTTATT-TAAAAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTAT
65 TTGTCTTATTAT-AAAGACAAACTTTAATTCTATCAAAAACGGCAGAAAGAAAACCTTTTCTTAT
* * * *
3583807 AACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGGTCTTAGCTTTC-AATCTTGG
129 AACACCAAAGCATCAATGTCATGTATCCAAATGAAGGGAACGTGGTCTT-GCTTCCAAATCTTGA
* * * *** * *
3583871 AAAGAATGGAGATTGCGACGAGAATCGATGCTTGTCAT-ATTTGGGAGATGAATTTTGATTTTAA
193 AAACAATAGAGACTGCGACGAGAATCGATGCTTGTCATAATTAAAGA-AAGAATTTTGATCTTAA
* **
3583935 GGAAAATAGGGCAAAAAAAAGATTTT-CATGCAAAAGAAAACCATCAATATCATTTATCCTAATG
257 GGAAAATAGGGCAAAAAAAAG-TTTTCCATGCAAAAGAAAACCATCAATATCATTTATCATAAAA
3583999 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCATGTTTG
321 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCATGTTTG
* *
3584064 TCTCCTTTGAGCCATGAACTTAGACT
386 TCTCATTTGAGCCACGAACTTAGACT
3584090 TTA
1 TTA
3584093 AAAAAATTGG
Statistics
Matches: 355, Mismatches: 53, Indels: 12
0.85 0.13 0.03
Matches are distributed among these distances:
410 10 0.03
411 337 0.95
412 8 0.02
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (411 bp):
TTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAAGAAGTATGACTATTCAAGTT
TGTCTTATTATAAAGACAAACTTTAATTCTATCAAAAACGGCAGAAAGAAAACCTTTTCTTATAA
CACCAAAGCATCAATGTCATGTATCCAAATGAAGGGAACGTGGTCTTGCTTCCAAATCTTGAAAA
CAATAGAGACTGCGACGAGAATCGATGCTTGTCATAATTAAAGAAAGAATTTTGATCTTAAGGAA
AATAGGGCAAAAAAAAGTTTTCCATGCAAAAGAAAACCATCAATATCATTTATCATAAAAAGGAG
AATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCATGTTTGTCTCA
TTTGAGCCACGAACTTAGACT
Found at i:3584633 original size:476 final size:475
Alignment explanation
Indices: 3583677--3594655 Score: 13114
Period size: 476 Copynumber: 23.1 Consensus size: 475
3583667 CGAAGTTAGA
*
3583677 CTTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTAT---TATTC
1 CTTT-TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTC
* * *
3583739 ATGTTTGTCTTATTTAAAAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCT
65 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCT
** * **
3583804 TATAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGGTCTTAGCTTTCAATCTT
130 T-GCACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTT
* * * *
3583869 GGAAAGAATGGAGATTGCGACGAGAATCGATGCTTGTCATATTT-GGGAGATGAATTTTGATTTT
194 GAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGG-GATGAATTTTGATTTT
* * *
3583933 AAGGAAAATAGGGCAAAAAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAAT
258 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * *
3583998 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAACGAAGATCATTACTAGAATCCATGTTT
323 GAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
** * * * * *
3584063 GTCTCCTTTGAGCCATGAACTTAGACTTTAAAAAAATTGGTGGGAAGAACG-GTGTTCTTGCGAA
388 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCT-TTCTTGCGAA
* * * *
3584127 ATCAAAGCATCAATATCATATGTC
452 ACCAAAGCATCAATATCGTGTATC
*
3584151 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * *
3584216 CGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTATTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
* * * *
3584281 GCA-ACCTGAAAACATCAATGTCATGTAT-CTGAATGAAGGGAAGGTGTTCTTGGCTCTCAATCT
131 GCACACC--AAAGCATCAATGTCATGTATCCT-AATGAAGGGAATGTGTTCTTAGCTCCCAATCT
* * * * * * *
3584344 TCAAAAGAAAGGAGACTGCGATGAGAATCGATACTTGTCATATTTAAGTGATTAATTTTGATTTT
193 TGAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* *
3584409 GAGGAAAATAGGGCAAAGAGAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
258 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
3584474 GAGAAGAATGTGTTTATTGTTCTTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGCTT
323 GAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * *
3584539 GTCTTGTTTGAGGCACGAACTTACATTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGGGAAA
388 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
*
3584604 CCAAAGCATCAATATCATGTATC
453 CCAAAGCATCAATATCGTGTATC
** * * * *
3584627 CTTTTGAGAAGACTATGTTTATTATGGCTAATCCAGAAAAGAATGGGAATTAGTATGACTATTGA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * *
3584692 TGTTTGTCTTATGTAGGAGACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
* *
3584757 GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCTCAATCTTG
131 G-CACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTTG
* * * *
3584822 AAAAGAATGGAGACTGCGATGAGAATCGATGCTTGTCATATTGAAAGGATGAATTTTGATTTTAA
195 AAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAA
* * * *
3584887 GGAAAATATGGCAAGGACAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGA
260 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * * **
3584952 AGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATTTTTACTAGAATCCATGTTTGT
325 GGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * *
3585017 CTCATTTGAGGCA-GAAACTTAAGACTTTAAAAAAATTGGTGGGAAGAAAGGCTTTCTTGCGAAA
390 CTTATTTGAGGCACG-AACTT-AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
*
3585081 CCAAAGCATCGATATCGTGTATC
453 CCAAAGCATCAATATCGTGTATC
* * * *
3585104 CTTATGAGAAGACTTTGTTTGTGGT-CTCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTA
1 CTTTTGAGAAGACTATGTTTATGGTGC-CTAATCCTGAAAAGAATGGGGATTAGTATGACTATTC
* * * * **
3585168 ACGTTTGTTTTATTTAAGAGATAAACTTTGATACTATCAAAAATGGTGGATGGAAAACCTTTTCT
65 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCT
* * * *** * * *
3585233 TGCGACACCAAAACGTCAATGTCTTGTATCCGCTTGAAGCGAATGTGTTCTTGGCTCCCAATCTG
130 TGC-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTT
* * *
3585298 GAAAAGAATGGAGATTGTGATGAGAATCGATGCTTGTCATATTTAAGTGATGAATTTTGATTTTA
194 GAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTA
* *
3585363 AGGAAAATAGGGCAAACAAAAGATTTCCAAT-CAAAAAAAAATCATCAATATCATTTATCCTAAT
259 AGGAAAATAGGGCAAAGAAAAGATTTCC-ATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * **
3585427 GAGGAGAATGTGTTTATATTTCTTAATGACAAAATGAATAAAGATCATTACTACAATCCACATTT
323 GAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * *
3585492 GTCTTGTTTGGGGCACGAACTTAGACTTTACAAAAATAGGTGTGAAGAAAGCCTTTCTTGCTAAA
388 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
3585557 CCAAAGCATCAATATCGTGTATC
453 CCAAAGCATCAATATCGTGTATC
* * * * *
3585580 ATTTTGAGAAAACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTAAGACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * *
3585645 TGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACGATGGAAAGAAAAGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
* * * * * * * *
3585710 GGGACACCAAAGCATC---G--ATGTATCCTAATGAAGGAAATCTATTCATGGTTCCAAATCTTG
131 -GCACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTTG
* * * * *
3585770 AAAAGAGTGGAGACTGTTACAAGAATCGATGCCTGTCACATTT-AGGTGATGAATTTTGATTTTA
195 AAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGG-GATGAATTTTGATTTTA
* * *
3585834 AGGAAAATAGGGCAAAGAAAAGATTTCCATTTCCATGAAAAAGAAAATCACCAATATCTTTTATC
259 AGGAAAATAGGGCAAAGAAAAG------ATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * *
3585899 CTAATAAGGAGAATGTATTTATAGTTCTTAATCACAAAATGAATGAAGATCATTGCTAGAATCCA
318 CTAATGAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
* * ** *
3585964 TGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAAATTGGTGGGGGGAAAGCCTTCCTTG
383 TGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG
** * * *
3586029 TTAAACTAAAGCATCAATATTGTGCATC
448 CGAAACCAAAGCATCAATATCGTGTATC
** * * * *
3586057 CTTATAAAGGATACTATGTTTATGATGCCTAATCCTGAAAAGAACGGGGATTAGTATGACTATTC
1 CTT-TTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTC
* * * * * *
3586122 ATGTCTATCTTACTTAAGAGATAAACTTTGATTCTATC-AAAATCGATGGAAAAAAAACCTTTTC
65 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAACCTTTTC
* * * * * * *
3586186 TTGCGACACCAGAGCATCAATGTCATGCATCATAATAAAGGGAATGTGTTCTTGGTTCCAAATCT
129 TTGC-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCT
* * * * * * * *
3586251 TGAAAACAATAGAGACTATTACAAGAATCGATGCTTGCCATATTTAAGGGACGAACTTTGATTTT
193 TGAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * * *
3586316 ATGGAAAATATGGCAAAGAAAAGATTTTCATGCAAAAAAAAATCATCAATATCATTTATCCTAAT
258 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * ** * *
3586381 GAGGAGAACGCGTTTATAGTTCTTAATCACAAAACGAAAAAAGATCATTGCTAGAATCCATTTTT
323 GAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * * *
3586446 GTCTTGTTTGAGGGACAAACTTACACTTCACAAAAATTGGTGGGGAGAAAGCCTTTCTTGAGAAA
388 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
* * *
3586511 CCAATGCATCAATATCATGTTTC
453 CCAAAGCATCAATATCGTGTATC
* * * * ** * * *
3586534 CTTATAAGAACATTATGTTTATGGAACCTAATCCTGAAAAGAATAGGGATTAGTATGACCACTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
3586599 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
* * * * *
3586664 GCGACCCCAAATCATCAATGTCATCTATCCTAATGAAGAAAATGAAAAAAATGTGTTCTTAGTTC
131 GC-ACACCAAAGCATCAATGTCATGTATCCTAATGAAG-----G----GAATGTGTTCTTAGCTC
* * * * * *
3586729 CCAATCTTTG-AAAGAGTGGAGGCTGTTACGAGAATCGTTGCTTGTCATTTTTAGGGGATGAACT
186 CCAATC-TTGAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAA-T
* * ** * *
3586793 TTT-ATTTTAAGGTAAATAGGGCAAAGAACAGATTTCTGTGCAAAA-AAAATTATCAGTATCATT
249 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * * * *
3586856 TGTCCTAACGAGGAGAATTTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAA
314 TATCCTAATGAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAA
* ** * *
3586921 T-CATGTTTATCTTATTTGAGGCATAAACCTAGACTTCACAAAAATTGGTAGGG-AGAAAGCCTT
379 TCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAGAAAGCCTT
*
3586984 TCTTGTGAAACCAAAGCATCAATATCGTGTATC
443 TCTTGCGAAACCAAAGCATCAATATCGTGTATC
* ** * * ** *
3587017 CTTATGAGAAGGTTATGTTTATGGAGCCTAATCCTAAAAAGAATAAGGATTAGTATGACTACTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * *
3587082 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAACCTTTTCTC
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
* * * **
3587147 ACGACACCAAAGCATCAATGTCATGCATCCCAATGAAGGGAATGTGTTCTTAGCTCCCAATAATG
131 GC-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTTG
* * **
3587212 CAAGGAAT-GACGACTGTGAAAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTA
195 AAAAGAATGGA-GACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTA
3587276 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
259 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
3587341 AGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
324 AGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
** * * * * *
3587406 TCCCATTTAAGACACGAACTTACACTTTGCAAAAATT-GTAGGGAAGAAAGCCTTTCTTGCAAAA
389 TCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAGAAAGCCTTTCTTGCGAAA
* * *
3587470 CTAAAGCATCAATATCTTGTGTC
453 CCAAAGCATCAATATCGTGTATC
* * *
3587493 CTTATGAGAAGACTATGTTTATAGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * * * *
3587558 TGTTTGTCTTATTTAAGAGAAAAACTTTGATTCTACCAATAACGG-GGAAA-AAAAGCTTTTCCT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
* * *
3587621 GCAGCACCAAAGCATCAATGTCATGTTTCCTAATGAAAGGAATGTGTTCTTCGCTCCCAATCTTG
131 GCA-CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTTG
** * *
3587686 AAAAGAATGGAGACTGCAATGAGAATTGATGCTTGTCATATTT-AGGAGATGAATTTTGATTTTA
195 AAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGG-GATGAATTTTGATTTTA
* ** * * * *
3587750 AGTAAAATAGGTTAACGAAAAGATTTTCATGCAAAA-AAGGATCATCAATATCATTTATCTTAAT
259 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA-AATCATCAATATCATTTATCCTAAT
* * ***
3587814 GAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGAGTGAAGATCATTACTAGAATTTGTGTTT
323 GAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * * * * *
3587879 GTCCTGTTTAAGGTACGAACTTAGACTTTATAAAAATTGATGGGAAAAAAAGCATTTCTTGCAAA
388 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAGAAAGCCTTTCTTGCGAA
** *
3587944 ACCAAAGTGTCAAGATCGTGTAT-
452 ACCAAAGCATCAATATCGTGTATC
* * * * *
3587967 CTTCATGAGAAGACTATGTTTATGGTGCCTTATCCTGCAAAGAATAGGGATTAGTATGACTATTT
1 CTT-TTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTC
* * * * *
3588032 ATGTTTGTTTTATTTAAGGGATAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAACTTTTCT
65 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCT
* * * * *
3588097 TGTGATACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTCTTAGTTCCCAATCAT
130 TG-CACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTT
* * * * * *
3588162 GAAATGAATGGAGACTGTTACGAGAATCGATGCCTATTATAATTAAGGGATGAATTTTGATTTTA
194 GAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTA
* * * * * *
3588227 AGAAAAATAAGGCAAAGAAAAGATTTTCAAGGAAAAGAAAATTATCAATATCATTTATCCTAGA-
259 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA-AT
* * * *
3588291 AAGGAGAATGGGTTTATAGTTCTTAATCACAAAATG-ATCGAAGATCATTACCAGAATCCATTTT
323 GAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAAT-GAAGATCATTACTAGAATCCATGTT
** * *
3588355 TGTCTTATTTGAGAAACGAACTTAGACTTTAAAAAAATTGGTGGGAAGAAAGCCTTTCTGGCGAA
387 TGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAA
*
3588420 ACCAAAGCATCAATA-CTATGTATC
452 ACCAAAGCATCAATATC-GTGTATC
* * * *
3588444 CTTTTGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGAGAGTAGTATGACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * *
3588509 TGTTTCTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
* * * * *
3588574 GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTCTTGGTTCCAAATCTAT
131 G-CACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCT-T
** * * * * * **
3588639 -AAAAGTGTGGAGACTGTTATGAGAATCAATGCTTGTC-TTTGTTAAGAGATGAACCTTGATTTT
194 GAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATAT-TTAAGGGATGAATTTTGATTTT
* *
3588702 AAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
258 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * **
3588767 G-GGAAGAATGTGCTTATA-TTGCTTAATCACAAAATGATTTATTATCATTACTAGAATCCATGT
323 GAGG-AGAATGTGTTTATAGTT-CTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * ** * *
3588830 TTGTCTTATTTGAGGAACAAACTTAGACTTTACAAAAATTGACAGGG-AGAAAGCCTTTTTTTCG
386 TTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTG-GTGGGAAGAAAGCCTTTCTTGCG
*
3588894 AAATCAAAGCATCAATATCGTGTATC
450 AAACCAAAGCATCAATATCGTGTATC
*
3588920 GTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTTG-AAAGAATGGGTG-TTAGTAT-ACTATT
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCC-TGAAAAGAATGGG-GATTAGTATGACTATT
* * * * *
3588982 CATGTTTGTCTTATTTAAGGGATAAATTTTGAATCTAT-ACAAAATGGTGGAAAGAAAAGCTTTT
64 CATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA-AAAATGGTGGAAAGAAAACCTTTT
* * * * * *
3589046 CTCGTG-ACACCAAAGCATCAATGTCATGTATTCTAATGAAGGGTATTTGTTCTTGGTTCCAAAT
128 CT--TGCACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAAT
* * * * * *
3589110 CTTG-AAACAATGGAGACTGTTACGAGAATTGATACTTGTCATATTTAAAGGATGGATTTTGATT
191 CTTGAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATT
* ** ** * *
3589174 TTAAGGAAAATAGGGAAAAGAAAAGATTTTTATGGTAAAGATAATCATGAATATCATTTATCCTA
256 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * *
3589239 ATAAGGAGAATGTGTTTATTGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCAAG-
321 ATGAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * * * * *
3589303 TTATCTCATTTGAGACACGAACTTACACTTTACAAAAATTAGTGGGAAGAAAGTCTTTTTTGAGA
386 TTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGA
3589368 AACCAAAGCATCAATATCGTGTATC
451 AACCAAAGCATCAATATCGTGTATC
* *
3589393 CTTTTG-GAAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAATATGACTATTC
1 CTTTTGAG-AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTC
* * ** *
3589457 ATGTTTGCCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAACAG-GGAAA-AAAAGCTTTTCT
65 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCT
* * * * * * *
3589520 TGCGACCCCAAAGCATTAATTTCATGTATCCTAATGAAGGGAATGTGTTCTTGGCTTCTAATGTT
130 TGC-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTT
* * * *
3589585 GAAAAGAATGGAGACTGTGACAAGAATC-ACCGCTTATCATATTTAGGGGATGAA-TTTGATTTT
194 GAAAAGAATGGAGACTGTGACGAGAATCGA-TGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * * * * *
3589648 AAGTAAAATAGTGCAAAGAAAAGATTTCCACGCCAAAGAAAATCATGAATATCATTTATCCTAGT
258 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
3589713 GAGTAGAATGGGTTTATAGTTCTTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATATTT
323 GAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * * *
3589778 GTTTTATTTGAGGAACAAACATAGACTTTACAGAAATTGGTGGGAAGAAAGCCTTCCTTGCAAAA
388 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
* *
3589843 CCAACGCATCAATATCGAGTATC
453 CCAAAGCATCAATATCGTGTATC
* *
3589866 CTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATAAGTATGACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * * **
3589930 TGTTTGTCTTATTTAAGAGACAAACTTTGATT-TAATAAAAAACGATGGAAACAAAAGATTTTCT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATCAAAAATGGTGGAAAGAAAACCTTTTCT
* * *
3589994 TGCGACACTAAAGCATCAAT-TCATGTAACCTAACGAAGGGAATAG-GTTCTTAGCTCCCAATCT
130 TGC-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT-GTGTTCTTAGCTCCCAATCT
* *
3590057 TGAAAAGAATGGAGACTGCGATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
193 TGAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * * * *
3590122 AAGTAAATTAGGGCAAAGAAAAGATTTCCATGGAAAAGAAAATCATTAATATCATTTATCCTAAG
258 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * *
3590187 GAGGAAAATGTGTTTATAGTTCCTAATCACACAATGAATGAAGATCATTACTAGAATCCTTGTTT
323 GAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * *
3590252 GTCTTATTTGAGGCACAAACTTAGTCTTTACAAAAATTCGTGGTAAGAAAGCATTCCTTGCGAAA
388 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
**
3590317 CCAAAGCATCAATATCGCATATC
453 CCAAAGCATCAATATCGTGTATC
* * * *
3590340 CTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTCGCATGACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
3590405 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
* * *
3590470 CCGACACCAAAGCATCAAT-TGCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCAT
131 GC-ACACCAAAGCATCAATGT-CATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTT
* * * * * * * *
3590534 GAAAAGAATAGAGATTGTTACCAGAATCGATG--TGTCTTTTTTAAGGGATCAACTTTGATTTTA
194 GAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTA
* * * * * * * *
3590597 TGAAAAATTGAGCAAAGAAAAGATTTCCTTGCTAAAGAAAATCATTAATATCATCTATCCTAATG
259 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * * * *
3590662 AGGAGACTGTGTTTAT-GTGCCTAATCATAAAATGAATGAAGATGATTACTAGAATCCAAGTTTG
324 AGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * *
3590726 TCTCATTTGTGGCACGAACTAAGACCTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTGCGAAAC
389 TCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
*
3590791 CAAA--ATGCCAATATTGTGTATC
454 CAAAGCAT--CAATATCGTGTATC
** * * * * * *
3590813 CTAATGTGAAGACTATGTTTTTGGTGCATAATACTAAAAAGAAT-GGGATTAGTATGACTATTCT
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* *
3590877 TGTTAGTCTTATTTAAGAGACAAGCTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTC
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCT-
* * *
3590942 ATG-ACAACAAAGCATCAGA-GTCATGCATCCTAATGAAGGGAATGTGTTCTTAGCTCGCAATCT
130 -TGCACACCAAAGCATCA-ATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCT
* ** ** * * *
3591005 TGAAAGGAACAGAGACTGCAATGGGAATCGATGCTTGTCATATTTATGGGATGAATTTTGATTTT
193 TGAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
* * * *
3591070 AAGGAAAATAGGGCAAAGAAAAGATTTACATGCAAAAGAAAATCATCAA-AGCCATTTATCTTAG
258 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATA-TCATTTATCCTAA
*
3591134 TGAGGAGAATGTGTTTATAGTTCATAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
322 TGAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* *
3591199 TGTCTCATTT-------G-----AG----TACAAAAATTGGTGGGAAGAAAGCC-TTCATTACGA
387 TGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTC-TTGCGA
* * *
3591247 AACTAAAGCGTAAATATCGTGTATC
451 AACCAAAGCATCAATATCGTGTATC
* * *
3591272 CTTATGAGAAAACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * *
3591337 T-TTTATCTTATTTAAGAGACAAACTTTAATTCTATTAAAAATGGTGGAAAAAAAACCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
* * * *
3591401 TCGACACCAAAGCATCAATGTCATGCATCCTTATGAAAGGAATGTGTTCTTAGCTCCCAATCTTG
131 GC-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTTG
* * ** * *
3591466 AAAGGAATAGAGACTGTGATAAGAATCGAGGCTTGTCATATTTAAGGGATGGATTTTGATTTTAA
195 AAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAA
* *
3591531 GGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCTTAATGA
260 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * *
3591596 GGAGAATGTGTTTATCGTTCTTAATCACAAAAT-AATTGAAGTTCATTACTAGAATCCGTGTTTG
325 GGAGAATGTGTTTATAGTTCTTAATCACAAAATGAA-TGAAGATCATTACTAGAATCCATGTTTG
* * * * *
3591660 TCTTATTTGAGGAACAAACTTAGACTTTACAAAAATCGGTGGGGAGAAAGCCTTT-TTGGCAAAA
389 TCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-GCGAAA
* *
3591724 TCAAAGCGTCAATATCGTGTATC
453 CCAAAGCATCAATATCGTGTATC
* * * *
3591747 ATTTTGAGAAGACTATGTTTATGATGCCTAAACCTGAAAAGAATGGGGATTAGTATAACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * * *
3591812 TGTTTGTCTTATTTAAAAGACAAACGTTGATTCTATTAAAAATGGTGAAAAAAAAACCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTC-T
* * * *
3591877 TCCACACCAAAGCATCAATGTCATGCATCTTAATGAAAGGAATGTGTTCTTAGCTCCCAATCTTG
130 TGCACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTTG
* * * *
3591942 AAAAGAATTGAGACTGTGACAAGAATTG-TGGCTTGTTATATTTAAGGGATGAATTTTGATTTTA
195 AAAAGAATGGAGACTGTGACGAGAATCGAT-GCTTGTCATATTTAAGGGATGAATTTTGATTTTA
* * *
3592006 AGGAAAATAGGGCAAAGAAAAGATTTCCATACAAAAGAAAATCATGAATATCATTTATCTTAATG
259 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * **
3592071 AGGAGAATGTG-TTATCA-TTCTTAATCACAAAATAAAGGATGATCATTACTAGAATCTGTGTTT
324 AGGAGAATGTGTTTAT-AGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * * *
3592134 GTCTCATTTGAGGAACGAACTTGGACTTTACAAAAATCGGTGGAAAGAAAGCCTTTTTTGCAAAA
388 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
** ** *
3592199 TGAAAGTGTCAATATCATGTATC
453 CCAAAGCATCAATATCGTGTATC
* * * * *
3592222 GTTTTGAGAAGACTATGTTTATGGTGCCTAAACTTGAAAAGAATGGGGATTAGTATAACAATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * **
3592287 TGTTTGTCTTATTTAAGGGATAAACTTTGATTCTATCAAAACA--GAGGAAA-ACAAAGTTTTTC
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA-ATGGTGGAAAGA-AAACCTTTTC
** * *
3592349 TCACGACAACAAAGCATCGAA-GTCATGCATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATC
129 TTGC-ACACCAAAGCATC-AATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATC
* * * * *
3592413 TT-AAAAGGAATAGAGATTGCGAAGAGAATCGAGGCTTGTCATATTTAAGGGATGAATTTTGATT
192 TTGAAAA-GAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATT
* * * *** *
3592477 TTAAGGAAAATAAGGCAATGAAAAGATTTCCATGTAAAAGAAAATCATCAATATTGCTTATCTTA
256 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * *
3592542 ATGAGGAGAATGTGTTTATAGTTCTTAATCACAAAATAAATGATGATCGTTACTAGAATCCATGT
321 ATGAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * * * *
3592607 TTGTCTCATTTGAGACACGAACTTACACTTTACAAAAATTAGTGGGAAGAAAGCCTTCCTTGCGA
386 TTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGA
*
3592672 AATCAAAGCATCAATATCGTGTATC
451 AACCAAAGCATCAATATCGTGTATC
* * * * *
3592697 CTTATAAGCAGACTATGTTTATGGTGCTTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* *
3592762 TTTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAATGGTGGAAA-AAAACCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTC--
* * *
3592826 TTG-ACACCAAAGCATCAATGTCATGCATCTTAATGAAAGGAATGTGTTCTTAGCTCCCAATCTT
129 TTGCACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTT
* * * * *
3592890 TAAAGGAATAGAGACTGTGACAAGAATCCG-GGCTTGTCATATTTAAGGGATGAATTTTGA-TTT
194 GAAAAGAATGGAGACTGTGACGAGAAT-CGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT
*
3592953 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCTTAAT
258 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAT
* * * * *
3593018 GAGGTGAATATGTTTATAGTTCTTAATCACAAAATAAATGAAGATCATTACTAGAATACGTGTTT
323 GAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* * * * * ** **
3593083 GTCTTATTTGAGGAACGAACTTAGACTTTACAAAACTCGATGGGGAGAAAGATTTTCTTGTAAAA
388 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
*
3593148 CCAAAGCATCAATATCGTGTATT
453 CCAAAGCATCAATATCGTGTATC
* * ** * * * *
3593171 GTTTCGAGAAGACTATGTTTATGGTGTGTAAACCTAAAAAAAATGGGGATTAGTATAACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * * * *
3593236 TGTTTGTCTTATTTAAGGGATAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTGCTC
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
* * * *
3593301 ACGACAACAAATCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTTG
131 GC-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTTG
* ** * * *
3593366 -AAAGCAATAGAGACTGCAACGAGAATTGATGCTTGTCATATTTATGAGATGAATTTTGATTTTA
195 AAAAG-AATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTA
* *
3593430 AGGAAAATAAGGCAAAGAAAAGATTTCCGTGCAAAAGAAAATCATCAATATCATTTATCCTAATG
259 AGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
* * * * * * **
3593495 AGGAAAATGT-TAATATGGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAGCCAAATTT
324 AGGAGAATGTGT-TTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
* ** *
3593559 GTCTTATTTGAGGCACGAACTTAGACTTTATAAAAATTGGTAAGAAGAAAAGCCTTTCTTCCGAA
388 GTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG-AAAGCCTTTCTTGCGAA
** * *
3593624 ACCAAAGTGTCAATATGGCGTATC
452 ACCAAAGCATCAATATCGTGTATC
* * *
3593648 CTTCTGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATTACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * * * * *
3593713 TATTTATCGTATTTAAGA-ACAAACTTTGATTCTATCAAAAACGATGGAAGGAAAAGCTTTTCTT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
* * * * * * *
3593777 GCGACACAAAAGCATTAATGTCATGTATTCTAATGAAGGAAATGTGTTCTTGGCTCCAAATCTCG
131 GC-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTTG
* * * * *
3593842 AAAAGAATGGAGATTGTTATGAGAATCGATGCTAGTCAAATTTAAGGGATGAATTTTGATTTTAA
195 AAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAA
* * * **
3593907 GGAAAATAAGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCTTTGATATCATTTATCCTAATGA
260 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
*
3593972 AGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT-TTT-T
325 GGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * *
3594035 CCTCATTTAAGGCACGAACTTACACTTTACAAAAATTGGTGGGATGAGAGCCTTTCTTGCGAAAC
390 -CTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* *
3594100 CAAAGCGTCAATATCATGTATC
454 CAAAGCATCAATATCGTGTATC
* * * *
3594122 CTTATGAGAAGACTATGTTTATGTTGCCTAAGCCTAAAAAGAATGGGGATTAGTATGACTATTCA
1 CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
* * * *
3594187 TGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAAAATGAG-GGGAA-AAAAGCTTCTCT
66 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATG-GTGGAAAGAAAACCTTTTCT
* * * * * *
3594250 TGCAACACTAAAGCATCAATGTCATGTATCCTAATAAAGGAAATATGTTATTGGCTCCCAATCTT
130 TGC-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTT
* * * * **
3594315 GAAAGGAATGGGGACTGCGACTAGAATCGATGCTCATCATATTT-AGGGAATGAATTTTGATTTT
194 GAAAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGG-ATGAATTTTGATTTT
* * * * **
3594379 AAGAAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAAAATCATCAATATTATTTATCCTTG
258 AAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAA
* * *
3594444 TGAGGAGAATGTGTTTATTGTTCTTAATCACAAAATGAATGAAGATCATTGCTAGAATCTATGTT
322 TGAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* * * *
3594509 TGTCTTGTTTGAGGCTA-AAACTTAGACTTCACAAAAATTAGG-GGGAAGAAAGCTTTTCTTGCG
387 TGTCTTATTTGAGGC-ACGAACTTAGACTTTACAAAAATT-GGTGGGAAGAAAGCCTTTCTTGCG
3594572 AAACCAAAGCATCAATATCGTGTATC
450 AAACCAAAGCATCAATATCGTGTATC
* *
3594598 TTTTTGAGAAGACTATGTTTGTGGTGCCCTAATCCTGAAAAGAATGGGGATTAGTATG
1 CTTTTGAGAAGACTATGTTTATGGTG-CCTAATCCTGAAAAGAATGGGGATTAGTATG
3594656 TGTAAGCTCT
Statistics
Matches: 9037, Mismatches: 1280, Indels: 373
0.85 0.12 0.03
Matches are distributed among these distances:
457 1 0.00
458 6 0.00
459 374 0.04
460 21 0.00
461 1 0.00
463 2 0.00
468 1 0.00
470 4 0.00
471 110 0.01
472 401 0.04
473 593 0.07
474 1777 0.20
475 1411 0.16
476 2506 0.28
477 1178 0.13
478 131 0.01
481 2 0.00
483 339 0.04
484 77 0.01
485 96 0.01
486 6 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (475 bp):
CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA
TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTT
GCACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGCTCCCAATCTTGA
AAAGAATGGAGACTGTGACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAG
GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
GAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
TTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCA
AAGCATCAATATCGTGTATC
Done.