Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold55
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4293517
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.26
Warning! 910309 characters in sequence are not A, C, G, or T
File 17 of 21
Found at i:3588620 original size:159 final size:158
Alignment explanation
Indices: 3583693--3594298 Score: 1226
Period size: 159 Copynumber: 67.0 Consensus size: 158
3583683 GAGAAGACTA
* * *
3583693 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTAT---TATTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * ** * **
3583755 AAAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTT-ATAACACCAAAGCA
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGCA
*
3583819 TCAATGTCATGTATCCTAATGAAGGGAATG
129 TCAATATCATGTATCCTAATGAAGGGAATG
* ** * * * ** * * * *
3583849 TGGTCTTA-GCTTTC-AATCTTGGAAAGAATG-GAG-ATTGCGACGAGAATCGATGCTTGTCATA
1 T-GT-TTATGGTGCCTAATCCTGAAAAGAATGAGAGTAGTATGAC--TATTC-ATGTTTGTCTTA
** ** * * *** * * * * **
3583910 TTTGGGAGATGAATTTTGATTTTAAGGAAAATAG-GGCAAAAAAAAGATTTTCATGCAAAAGAAA
61 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCAA
* *
3583974 ACCATCAATATCATTTATCCTAATG-AGGAGAATG
125 AGCATCAATATCATGTATCCTAATGAAGG-GAATG
* * * * *
3584008 TGTTTATAGTGCCTAATCAC--AAAATGAACGA-AG-A-TCATTACTAGAATCCATGTTTGTCTC
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCTT
* * * * * * * * *
3584068 CTTT--GAGCCATGAACTTAGACTT-TA-AAAAAATTGGTGGGAAG-AACGGTGTTCTTGCGAAA
60 ATTTAAGAGACA--AACTTTGA-TTCTATCAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * ** * * *
3584128 TCAAAGCATCAATATCATATGTCCTTTTG-AGAAGACTA
121 CCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
* *
3584166 TGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACTATTCACGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * *
3584231 AGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTATTCTTGC--AACCTGAAAAC
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACC--AAAGC
* *
3584294 ATCAATGTCATGTAT-CTGAATGAAGGGAAGG
128 ATCAATATCATGTATCCT-AATGAAGGGAATG
* * * * * * * ** *
3584325 TGTTCT-T-G-GCTCTCAATCTTCAAAAGAAAGGAGACT-GCGATGA-GAATCGATACTTGTCAT
1 TGTT-TATGGTGC-CT-AATCCTGAAAAG-AATGAGAGTAG-TATGACTATTC-ATGTTTGTCTT
* ** * * * * * * * *
3584385 ATTTAAGTGATTAATTTTGATT-T-TGAGGAAAATAG-GGCAAAGAGAAGATTTCCATGCAAAAG
60 ATTTAAGAGACAAACTTTGATTCTATCA--AAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAAC
* * * *
3584447 AAAATCATCAATATCATTTATCCTAATG-AGAAGAATG
122 CAAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
* * * * * * *
3584484 TGTTTATTGTTCTTAATCAC--AAAATGAAT-AAAG-A-TCATTACTAGAATCCATGCTTGTCTT
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCTT
* * * ** * * * * *
3584544 GTTTGAG-GCACGAACTTACATTTTA-CAAAAATTGGTGGGAAG-AAAGCCTTTCTTGGGAAACC
60 ATTTAAGAG-ACAAACTTTGATTCTATCAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAACC
** * * *
3584606 AAAGCATCAATATCATGTATCCTTTTG-AGAAGACTA
123 AAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
** * * * * * *
3584642 TGTTTATTATGGCTAATCCAGAAAAGAATGGGAATTAGTATGACTATTGATGTTTGTCTTATGTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAATGAG-AGTAGTATGACTATTCATGTTTGTCTTATTTA
* * *
3584707 GGAGACAAACTTTGATTCTATCAAAAAT-GATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCA
65 AGAGACAAACTTTGATTCTATCAAAAATAG-TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCA
*
3584771 TCAATGTCATGTATCCTAATGAAGGGAATG
129 TCAATATCATGTATCCTAATGAAGGGAATG
* * * * * * * *
3584801 TGTTCT-T--AGCTCTCAATCTTGAAAAGAATGGAGACT-GCGATGA-GAATCGATGCTTGTCAT
1 TGTT-TATGGTGC-CT-AATCCTGAAAAGAAT-GAGAGTAG-TATGACTATTC-ATGTTTGTCTT
* ** * * *** * * * * * * **
3584861 ATTGAA-AGGATGAATTTTGATTTTAAGGAAAATA-TGGCAAGGACAAGATTTCCATGCAAAAAA
60 ATTTAAGA-GACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACC
* * *
3584924 AAATCATCAATATCATTTATCCTAATGAAGAGAATG
123 AAAGCATCAATATCATGTATCCTAATGAAGGGAATG
* * * * * * *
3584960 TATTTATAGTGCCTAATCAC--AAAATGAATGA-AG-ATTTTTACTAGAATCCATGTTTGTCTCA
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGTATGACT---ATTCATGTTTGTCTTA
* * * * * * *
3585021 TTTGAG-GCAGAAACTTAAGACTT-TA-AAAAAATTGGTGGGAAGAAAGGC-TTTCTTGCGAAAC
61 TTTAAGAG-ACAAACTT-TGA-TTCTATCAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * * *
3585082 CAAAGCATCGATATCGTGTATCCTTATG-AGAAGACTT
122 CAAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
* * * * * *
3585119 TGTTTGTGGT-CTCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTAACGTTTGTTTTATTT
1 TGTTTATGGTGC-CTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTT
* * * ** * * * *
3585183 AAGAGATAAACTTTGATACTATCAAAAATGGTGGATGGAAAACCTTTTCTTGCGACACCAAAACG
64 AAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCA
* * *** *
3585248 TCAATGTCTTGTATCCGCTTGAAGCGAATG
129 TCAATATCATGTATCCTAATGAAGGGAATG
* * * * * *
3585278 TGTTCT-TGGCT-CCCAAT-CTGGAAAAGAATG-GAGATTGTGATGA-GAATCGATGCTTGTCAT
1 TGTT-TATGG-TGCCTAATCCT-GAAAAGAATGAGAG-TAGT-ATGACTATTC-ATGTTTGTCTT
* ** * * *** * * * * * **
3585338 ATTTAAGTGATGAATTTTGATTTTAAGGAAAATAG-GGCAAACAAAAGATTTCCAAT-CAAAAAA
60 ATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTC-TTGCGAAACC
* *
3585401 AAATCATCAATATCATTTATCCTAATG-AGGAGAATG
123 AAAGCATCAATATCATGTATCCTAATGAAGG-GAATG
** * * * * * * * ** *
3585437 TGTTTATATTTCTTAATGAC--AAAATGAAT-AAAGATCATTACT-ACAATCCACATTTGTCTTG
1 TGTTTATGGTGCCTAAT-CCTGAAAA-GAATGAGAG-T-AGTA-TGACTATTCATGTTTGTCTTA
* * * * * *
3585498 TTT-GGGGCACGAACTTAGACTT-TA-CAAAAATAGGTGTG-AAG-AAAGCCTTTCTTGCTAAAC
61 TTTAAGAG-ACAAACTTTGA-TTCTATCAAAAATA-GTG-GAAAGAAAAGCTTTTCTTGCGAAAC
* * ** ** *
3585558 CAAAGCATCAATATCGTGTATCATTTTG-AGAAAACTA
122 CAAAGCATCAATATCATGTATCCTAATGAAGGGAA-TG
* * * *
3585595 TGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTAAGACTATTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * *
3585660 AGAGACAAACTTTGATTTTATCAAAAA-CGATGGAAAGAAAAGCTTTTCTTGGGACACCAAAGCA
65 AGAGACAAACTTTGATTCTATCAAAAATAG-TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCA
* * *
3585724 TC-----GATGTATCCTAATGAAGGAAATC
129 TCAATATCATGTATCCTAATGAAGGGAATG
* * * * * * * * * ** **
3585749 TATTCATGGTTCCAAATCTTGAAAAGAGTGGAGACT-GT-T-ACAAGAATCGATGCCTGTCACAT
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGAC--TATTC-ATGTTTGTCTTAT
* * ** * * *** * * *
3585811 TTAGGTGATGAATTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTCCATTTCCATGAAAA
62 TTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTC--TTGC--G--AA
** * * * *
3585875 AGAAAATCACCAATATCTTTTATCCTAAT-AAGGAGAATG
120 ACCAAAGCATCAATATCATGTATCCTAATGAAGG-GAATG
* * * * *
3585914 TATTTATAGTTCTTAATCAC--AAAATGAATGA-AG-A-TCATTG-CTAGAATCCATGTTTGTCT
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-A-TGACT---ATTCATGTTTGTCT
* * * ** * ** * * * **
3585973 CATTTGAG-GCACGAACTTACACTT-TA-CAAAAATTGGTGG-GGGGAAAGCCTTCCTTGTTAAA
59 TATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAA
* ** * * * *
3586034 CTAAAGCATCAATATTGTGCATCCTTAT-AAAGGATACTA
121 CCAAAGCATCAATATCATGTATCCTAATGAAGGGA-A-TG
* * * * * * *
3586073 TGTTTATGATGCCTAATCCTGAAAAGAACGGGGATTAGTATGACTATTCATGTCTATCTTACTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAA-TGAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * * *
3586138 AGAGATAAACTTTGATTCTATC-AAAATCGATGGAAAAAAAACCTTTTCTTGCGACACCAGAGCA
65 AGAGACAAACTTTGATTCTATCAAAAATAG-TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCA
* * * *
3586202 TCAATGTCATGCATCATAATAAAGGGAATG
129 TCAATATCATGTATCCTAATGAAGGGAATG
* * * * * * * * * * *
3586232 TGTTCT-TGGTTCCAAATCTTGAAAACAAT-AGAG-ACTATTACAAGAATCGATGCTTGCCATAT
1 TGTT-TATGGTGCCTAATCCTGAAAAGAATGAGAGTAGTATGAC--TATTC-ATGTTTGTCTTAT
* * * ** * * * **
3586294 TTAAGGGACGAACTTTGATTTTATGGAAAATA-TGGCAAAGAAAAGATTTTCATGCAAAAAAAAA
62 TTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCAAA
* * *
3586358 TCATCAATATCATTTATCCTAATG-AGGAGAACG
126 GCATCAATATCATGTATCCTAATGAAGG-GAATG
* * * * * * * *
3586391 CGTTTATAGTTCTTAATCAC--AAAACGAA-AAAAG-A-TCATTG-CTAGAATCCATTTTTGTCT
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-A-TGACT---ATTCATGTTTGTCT
* * * ** * ** * *
3586450 TGTTTGAGGGACAAACTTACACTTC-A-CAAAAATTGGTGGGGAG-AAAGCCTTTCTTGAGAAAC
59 TATTTAAGAGACAAACTTTGA-TTCTATCAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * *
3586512 CAATGCATCAATATCATGTTTCCTTAT-AA-GAACATTA
122 CAAAGCATCAATATCATGTATCCTAATGAAGGGA-A-TG
** * * * *
3586549 TGTTTATGGAACCTAATCCTGAAAAGAATAGGGATTAGTATGACCACTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * ** *
3586614 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTGCGACCCCAAATCAT
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCAT
* * *
3586679 CAATGTCATCTATCCTAATGAAGAAAATGAAAAAAATG
130 CAATATCATGTATCCTAATGAAG-----G----GAATG
* * * * * * * * * *
3586717 TGTTCT-TAGTTCCCAATCTTTG-AAAGAGTG-GAGGCT-GTTACGA-GAATCGTTGCTTGTCAT
1 TGTT-TATGGTGCCTAATC-CTGAAAAGAATGAGA-G-TAG-TATGACTATTC-ATGTTTGTC-T
* * ** * * **** * * *
3586777 T-TTTAGGGGATGAACTTTTATTTTAAGGTAAATAG-GGCAAAGAACAG-ATTTCTGTGC-AAAA
59 TATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCT-TGCGAAAC
* ** * * * * *
3586838 AAAATTATCAGTATCATTTGTCCTAACG-AGGAGAATT
122 CAAAGCATCAATATCATGTATCCTAATGAAGG-GAATG
* * * *
3586875 TGTTTATAGTGCCTAATCAC--AAAATGAATGA-AG-A-TCATTACTAGAATCATGTTTATCTTA
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT--ATTCATGTTTGTCTTA
* * * * ** * *
3586935 TTTGAG-GCATAAACCTAGACTTC-A-CAAAAAT--TGGTAGGGAGAAAGCCTTTCTTGTGAAAC
61 TTTAAGAG-ACAAACTTTGA-TTCTATCAAAAATAGTGG-AAAGA-AAAGCTTTTCTTGCGAAAC
* * * * *
3586995 CAAAGCATCAATATCGTGTATCCTTATGAGAAGG-TTA
122 CAAAGCATCAATATCATGTATCCTAATGA-AGGGAATG
* * * * *
3587032 TGTTTATGGAGCCTAATCCTAAAAAGAATAAGGATTAGTATGACTACTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAATGA-GAGTAGTATGACTATTCATGTTTGTCTTATTTA
* ** * ** *
3587097 AGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAACCTTTTCTCACGACACCAAAGCAT
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCAT
* * *
3587162 CAATGTCATGCATCCCAATGAAGGGAATG
130 CAATATCATGTATCCTAATGAAGGGAATG
* * ** * * * * ** * * *
3587191 TGTTCT-TAGCT-CCCAATAATGCAAGGAATGACGACT-GTGA-AAAGAATCGATGCTTGTCATA
1 TGTT-TAT-GGTGCCTAATCCTGAAAAGAATGA-GAGTAGT-ATGACTATTC-ATGTTTGTCTTA
* ** * * *** * * * * **
3587252 TTTAAGGGATGAATTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTCCATGCAAAAGAAA
61 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCAA
* *
3587316 ATCATCAATATCATTTATCCTAATG-AGGAGAATG
125 AGCATCAATATCATGTATCCTAATGAAGG-GAATG
* * * * * **
3587350 TGTTTATAGTTCTTAATCAC--AAAATGAATGA-AG-A-TCATTACTAGAATCCATGTTTGTCCC
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCTT
* * ** * * * * * *
3587410 ATTTAAGACACGAACTTACACTT-T-GCAAAAATTGTAGGGAAG-AAAGCCTTTCTTGCAAAACT
60 ATTTAAGAGACAAACTTTGA-TTCTATCAAAAATAGT-GGAAAGAAAAGCTTTTCTTGCGAAACC
* * * * * *
3587472 AAAGCATCAATATCTTGTGTCCTTATG-AGAAGACTA
123 AAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
* * * *
3587508 TGTTTATAGTGCCAAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * * * *
3587573 AGAGAAAAACTTTGATTCTACCAATAA-CGGGGAAA-AAAAGCTTTTCCTGC-AGCACCAAAGCA
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGA-AACCAAAGCA
* * *
3587635 TCAATGTCATGTTTCCTAATGAAAGGAATG
129 TCAATATCATGTATCCTAATGAAGGGAATG
* * * * * ** * * *
3587665 TGTTCT-TCGCT-CCCAATCTTGAAAAGAATGGAGACT-GCAATGAGAATTGATGCTTGTCATAT
1 TGTT-TAT-GGTGCCTAATCCTGAAAAGAAT-GAGAGTAG-TATGACTATTCATGTTTGTCTTAT
* ** * * *** * * * *
3587727 TTAGGAGATGAATTTTGATTTTAAGTAAAATAG-GTTAACGAAAAGATTTTCATGC-AAA--AAA
62 TTAAGAGACAAACTTTGATTCTATCAAAAATAGTG-GAAAGAAAAGCTTTTCTTGCGAAACCAAA
* *
3587788 GGATCATCAATATCATTTATCTTAATG-AGGAGAATG
126 -G--CATCAATATCATGTATCCTAATGAAGG-GAATG
* * * * ** *
3587824 TGTTTATAGTGCTTAATCAC--AAAATGAGTGA-AG-A-TCATTACTAGAATTTGTGTTTGTCCT
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCTT
* * * * * *
3587884 GTTTAAG-GTACGAACTTAGACTT-TAT-AAAAATTGATGGGAAA-AAAAGCATTTCTTGCAAAA
60 ATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAATAG-T-GGAAAGAAAAGCTTTTCTTGCGAAA
** * * * * * * *
3587945 CCAAAGTGTCAAGATCGTGTATCTTCATG-AGAAGACTA
121 CCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
* * * * * *
3587983 TGTTTATGGTGCCTTATCCTGCAAAGAATAGGGATTAGTATGACTATTTATGTTTGTTTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * *
3588048 AGGGATAAACTTTGATTCTATCAAAAAT-GATGGAAAGAAAAACTTTTCTTGTGATACCAAAGCA
65 AGAGACAAACTTTGATTCTATCAAAAATAG-TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCA
* *
3588112 TCAATGTCATGTATCCTAATGAAAGGAATG
129 TCAATATCATGTATCCTAATGAAGGGAATG
* * * * * * * * * ** *
3588142 TGTTCT-TAGTTCCCAATCATGAAATGAATGGAGACT-GTTACGA-GAATCGATGCCTAT-TATA
1 TGTT-TATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAG-TATGACTATTC-ATGTTTGTCT-TA
* * ** * * ** * * ** **
3588203 ATTAAGGGATGAATTTTGATTTTAAGAAAAATAAG-GCAAAGAAAAGATTTTCAAG-GAAAAGAA
61 TTTAAGAGACAAACTTTGATTCTATCAAAAAT-AGTGGAAAGAAAAGCTTTTCTTGCG-AAACCA
** *
3588266 AATTATCAATATCATTTATCCT-A-GAAAGGAGAATG
124 AAGCATCAATATCATGTATCCTAATG-AAGG-GAATG
* * * * * ** ** * *
3588301 GGTTTATAGTTCTTAATCAC--AAAATG-ATCGA-AGATCATTACCAGAATCCATTTTTGTCTTA
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAAT-GAGAG-T-AGTATGACTATTCATGTTTGTCTTA
* * * * * * * * *
3588362 TTTGAGAAACGAACTTAGACTT-TA-AAAAAATTGGTGGGAAG-AAAGCCTTTCTGGCGAAACCA
61 TTTAAGAGACAAACTTTGA-TTCTATCAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAACCA
** ** *
3588424 AAGCATCAATA-CTATGTATCCTTTTG-AGAAAACTA
124 AAGCATCAATATC-ATGTATCCTAATGAAGGGAA-TG
*
3588459 TGTTTATGGTGCCTAATCCTGAAAAGAATAGAGAGTAGTATGACTATTCATGTTTCTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* *
3588524 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCAT
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCAT
* *
3588589 CAATGTCATGTATCCTAATGAAGGGAATA
130 CAATATCATGTATCCTAATGAAGGGAATG
* * * ** * * * *
3588618 TGTTCT-TGGTTCCAAAT-CTATAAAAGTGTGGAGACT-GTTATGA-GAATCAATGCTTGTCTT-
1 TGTT-TATGGTGCCTAATCCT-GAAAAGAAT-GAGAGTAG-TATGACTATTC-ATGTTTGTCTTA
** * * *** * * * * **
3588678 TGTTAAGAGATGAACCTTGATTTTAAGGAAAATAG-GGCAAGGAAAAG-ATTTCGATGCAAAAGA
61 T-TTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTC-TTGCGAAACC
* *
3588741 AAATCATCAATATCATTTATCCTAATG--GGAAGAATG
123 AAAGCATCAATATCATGTATCCTAATGAAGG--GAATG
* ** * ** * * *
3588777 TGCTTATATTGCTTAATCAC--AAAATG-AT-TTATTA-TCATTACTAGAATCCATGTTTGTCTT
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCTT
* * * *
3588837 ATTTGAG-GAACAAACTTAGACTT-TA-CAAAAAT--T-GACAGGGAGAAAGCCTTTT-TTTCGA
60 ATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAATAGTGGA-A-AGA-AAAG-CTTTTCTTGCGA
* * * ** * * *
3588895 AATCAAAGCATCAATATCGTGTATCGTTTTG-AGAAGACTA
119 AACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
* *
3588935 TGTTTATGGTGCCTAATCCTTG-AAAGAATGGGTGTTAGTAT-ACTATTCATGTTTGTCTTATTT
1 TGTTTATGGTGCCTAATCC-TGAAAAGAATGAGAG-TAGTATGACTATTCATGTTTGTCTTATTT
* * * * * * * *
3588998 AAGGGATAAATTTTGAATCTAT-ACAAAATGGTGGAAAGAAAAGCTTTTCTCGTGACACCAAAGC
64 AAGAGACAAACTTTGATTCTATCA-AAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGC
* * * *
3589062 ATCAATGTCATGTATTCTAATGAAGGGTATT
128 ATCAATATCATGTATCCTAATGAAGGGAATG
* * * * * * ** * ** *
3589093 TGTTCT-TGGTTCCAAATCTTG-AAACAATGGAGACT-GTTACGAGAATTGATACTTGTCATATT
1 TGTT-TATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAG-TATGACTATTCATGTTTGTCTTATT
*** * * *** * *
3589155 TAA-AGGATGGATTTTGATTTTAAGGAAAATAG-GGAAAAGAAAAGATTTT-TATG-GTAAA-GA
63 TAAGA-GACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCT-TGCG-AAACCA
* * *
3589215 TAATCATGAATATCATTTATCCTAAT-AAGGAGAATG
124 -AAGCATCAATATCATGTATCCTAATGAAGG-GAATG
* * * * * * * *
3589251 TGTTTATTGTTCTTAATCAC--AAAATGAATGA-AG-A-TCATTACTAGAATCCAAG-TTATCTC
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCTT
* * * ** * *
3589310 ATTTGAGACACGAACTTACACTT-TA-CAAAAATTAGTGGGAAG-AAAGTCTTTT-TTGAGAAAC
60 ATTTAAGAGACAAACTTTGA-TTCTATCAAAAA-TAGTGGAAAGAAAAG-CTTTTCTTGCGAAAC
* ** * * *
3589371 CAAAGCATCAATATCGTGTATCCTTTTGGAA-AGACTA
122 CAAAGCATCAATATCATGTATCCTAAT-GAAGGGAATG
* * * *
3589408 TGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAATATGACTATTCATGTTTGCCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAA-TGAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * **
3589473 AGAGAAAAACTTTGATTCTATCAAAAACAG-GGAAA-AAAAGCTTTTCTTGCGACCCCAAAGCAT
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCAT
* *
3589536 TAATTTCATGTATCCTAATGAAGGGAATG
130 CAATATCATGTATCCTAATGAAGGGAATG
* ** * * * * * * * *
3589565 TGTTCT-TGGCT-TCTAATGTTGAAAAGAATG-GAG-ACTGTGACAAGAATCACCGCTTATCATA
1 TGTT-TATGG-TGCCTAATCCTGAAAAGAATGAGAGTAGTATGAC--TATTCA-TGTTTGTCTTA
* * ** * *** * * * ** * **
3589626 TTTAGGGGATGAA-TTTGATTTTAAGTAAAATAGTGCAAAGAAAAGATTTCCACGCCAAAGAAAA
61 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAA
* * * * *
3589690 TCATGAATATCATTTATCCTAGTG-AGTAGAATG
126 GCATCAATATCATGTATCCTAATGAAG-GGAATG
* * * * * * * * *
3589723 GGTTTATAGTTCTTAATCAC--AAAATGAAAGA-AG-A-TCATTACTAGAATCCATATTTGTTTT
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCTT
* * * * * * * * *
3589783 ATTTGAG-GAACAAACATAGACTT-TA-CAGAAATTGGTGGGAAG-AAAGCCTTCCTTGCAAAAC
60 ATTTAAGAG-ACAAACTTTGA-TTCTATCA-AAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAAC
* * * * *
3589844 CAACGCATCAATATCGA-GTATCCTTATG-AGAAGACTA
122 CAAAGCATCAATATC-ATGTATCCTAATGAAG-GGAATG
*
3589881 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGA-TAAGTATGACTATTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAATGAGAGT-AGTATGACTATTCATGTTTGTCTTATTTA
* * * *
3589945 AGAGACAAACTTTGATT-TAAT-AAAAA-ACGATGGAAACAAAAGATTTTCTTGCGACACTAAAG
65 AGAGACAAACTTTGATTCT-ATCAAAAATA-G-TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG
* *
3590007 CATCAAT-TCATGTAACCTAACGAAGGGAATAG
127 CATCAATATCATGTATCCTAATGAAGGGAAT-G
* * * * * * * * *
3590039 -GTTCT-TAGCT-CCCAATCTTGAAAAGAATGGAGACT-GCGATGA-GAATCGATGCTTGTCATA
1 TGTT-TAT-GGTGCCTAATCCTGAAAAGAAT-GAGAGTAG-TATGACTATTC-ATGTTTGTCTTA
* ** * * *** * * * * **
3590099 TTTAAGGGATGAATTTTGATTTTAAGTAAATTAG-GGCAAAGAAAAGATTTCCATG-GAAAAGAA
61 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCG-AAACCA
* * * * *
3590162 AATCATTAATATCATTTATCCTAA-GGAGGAAAATG
124 AAGCATCAATATCATGTATCCTAATGAAGG-GAATG
* * * * * *
3590197 TGTTTATAGTTCCTAATCAC--ACAATGAATGA-AG-A-TCATTACTAGAATCCTTGTTTGTCTT
1 TGTTTATGGTGCCTAATC-CTGA-AAAGAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCTT
* * * * * * *
3590257 ATTTGAG-GCACAAAC-TT-AGTCTTTACAAAAATTCGTGGTAAG-AAAGCATTCCTTGCGAAAC
60 ATTTAAGAG-ACAAACTTTGATTCTAT-CAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAAC
*** * * * *
3590318 CAAAGCATCAATATCGCATATCCTTATG-AGAAGACTA
122 CAAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
* * *
3590355 TGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTCGCATGACTATTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * *
3590420 AGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTTCCGACACCAAAGCAT
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCAT
3590485 CAAT-TGCATGTATCCTAATGAAGGGAATG
130 CAATAT-CATGTATCCTAATGAAGGGAATG
* * * * * * * *
3590514 TGTTCT-TAGTTCCCAATCATGAAAAGAAT-AGAGATTGT-T-ACCAGAATCGATG--TGTCTTT
1 TGTT-TATGGTGCCTAATCCTGAAAAGAATGAGAG-TAGTATGA-C-TATTC-ATGTTTGTCTTA
* * * * * * * * * **
3590573 TTTAAGGGATC-AACTTTGATTTTATGAAAAATTGAGCAAAGAAAAGATTTCCTTGCTAAAGAAA
61 TTTAAGAGA-CAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAA
* * * *
3590637 ATCATTAATATCATCTATCCTAATG-AGGAGACTG
125 AGCATCAATATCATGTATCCTAATGAAGG-GAATG
* * * * *
3590671 TGTTTAT-GTGCCTAATCAT-AAAATGAATGA-AG-A-TGATTACTAGAATCCAAGTTTGTCTCA
1 TGTTTATGGTGCCTAATCCTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCTTA
** * ** * * *
3590731 TTTGTG-GCACGAACTAAGA-CCT-TACAAAAATTG-GTGAGAA-AAAAGCCTTTCTTGCGAAAC
61 TTTAAGAG-ACAAACTTTGATTCTAT-CAAAAATAGTG-GA-AAGAAAAGCTTTTCTTGCGAAAC
** * *
3590791 CAAA--ATGCCAATATTGTGTATCCTAATGTGAA--GACTA
122 CAAAGCAT--CAATATCATGTATCCTAA--TGAAGGGAATG
* * * * * * * *
3590828 TGTTTTTGGTGCATAATACTAAAAAGAATGGGATTAGTATGACTATTCTTGTTAGTCTTATTTAA
1 TGTTTATGGTGCCTAATCCTGAAAAGAATGAGAGTAGTATGACTATTCATGTTTGTCTTATTTAA
* * * ***
3590893 GAGACAAGCTTTGATTCTATCAAAAATGGTGGAAAGAAAACCTTTTCTCATGACAA-CAAAGCAT
66 GAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGA-AACCAAAGCAT
* *
3590957 CAGA-GTCATGCATCCTAATGAAGGGAATG
130 CA-ATATCATGTATCCTAATGAAGGGAATG
* * * * * * ** * * *
3590986 TGTTCT-TAGCT-CGC-AATCTTGAAAGGAACAGAGACT-GCAATG-GGAATCGATGCTTGTCAT
1 TGTT-TAT-GGTGC-CTAATCCTGAAAAGAA-TGAGAGTAG-TATGACTATTC-ATGTTTGTCTT
* * ** * * *** * * * * **
3591046 ATTTATGGGATGAATTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTACATGCAAAAGAA
60 ATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCA
* * * * *
3591110 AATCATCAA-AGCCATTTATCTTAGTG-AGGAGAATG
124 AAGCATCAATA-TCATGTATCCTAATGAAGG-GAATG
* * * * * *
3591145 TGTTTATAGTTCATAATCAC--AAAATGAATGA-AG-A-TCATTACTAGAATCCATGTTTGTCTC
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCTT
* * * * * *
3591205 ATTT--GAG--------T-A--C-A--AAAATTGGTGGGAAG-AAAGC-CTTCATTACGAAACTA
60 ATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTC-TTGCGAAACCA
* * * * ** *
3591252 AAGCGTAAATATCGTGTATCCTTATG-AGAAAACTA
124 AAGCATCAATATCATGTATCCTAATGAAGGGAA-TG
* * * *
3591287 TGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCAT-TTTATCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * * * *
3591351 AGAGACAAACTTTAATTCTATTAAAAATGGTGGAAAAAAAACCTTTTCTTTCGACACCAAAGCAT
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCAT
* * * *
3591416 CAATGTCATGCATCCTTATGAAAGGAATG
130 CAATATCATGTATCCTAATGAAGGGAATG
* * * * * ** * * * *
3591445 TGTTCT-TAGCT-CCCAATCTTGAAAGGAATAGAGACT-GTGAT-AAGAATCGAGGCTTGTCATA
1 TGTT-TAT-GGTGCCTAATCCTGAAAAGAAT-GAGAGTAGT-ATGACTATTC-ATGTTTGTCTTA
* *** * * *** * * * ** **
3591506 TTTAAGGGATGGATTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTCCATGTAAAAGAAA
61 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCAA
* * *
3591570 ATCATCAATATCATTTATCTTAATG-AGGAGAATG
125 AGCATCAATATCATGTATCCTAATGAAGG-GAATG
* * * * * * *
3591604 TGTTTATCGTTCTTAATCAC--AAAATAATTGA-AGT--TCATTACTAGAATCCGTGTTTGTCTT
1 TGTTTATGGTGCCTAATC-CTGAAAAGAA-TGAGAGTAGT-ATGACT---ATTCATGTTTGTCTT
* * * ** * *
3591664 ATTTGAG-GAACAAACTTAGACTT-TA-CAAAAATCGGTGGGGAG-AAAGCCTTTT-TGGCAAAA
60 ATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAAT-AGTGGAAAGAAAAG-CTTTTCTTGCGAAA
* * * * ** * * *
3591724 TCAAAGCGTCAATATCGTGTATCATTTTG-AGAAGACTA
121 CCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
* * * * *
3591762 TGTTTATGATGCCTAAACCTGAAAAGAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * * * * * * *
3591827 AAAGACAAACGTTGATTCTATTAAAAATGGTGAAAAAAAAACCTTTTCTTTCCACACCAAAGCAT
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCAT
* * * *
3591892 CAATGTCATGCATCTTAATGAAAGGAATG
130 CAATATCATGTATCCTAATGAAGGGAATG
* * * * ** ** * *
3591921 TGTTCT-TAGCT-CCCAATCTTGAAAAGAATTGAGACT-GTGACAAGAATT-GTGGCTTGT-TAT
1 TGTT-TAT-GGTGCCTAATCCTGAAAAGAA-TGAGAGTAGT-ATGACTATTCAT-GTTTGTCT-T
* ** * * *** * * * * * **
3591981 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAG-GGCAAAGAAAAGATTTCCATACAAAAGAA
60 ATTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCA
* * * *
3592045 AATCATGAATATCATTTATCTTAATG-AGGAGAATG
124 AAGCATCAATATCATGTATCCTAATGAAGG-GAATG
** * * * * * * * *
3592080 TG-TTATCATTCTTAATCAC--AAAATAAAG-GA-T-GATCATTACTAGAATCTGTGTTTGTCTC
1 TGTTTATGGTGCCTAATC-CTGAAAAGAATGAGAGTAG-T-ATGACT--ATTC-ATGTTTGTCTT
* * * * *
3592139 ATTTGAG-GAACGAACTTGGACTT-TA-CAAAAATCGGTGGAAAG-AAAGCCTTTT-TTGCAAAA
60 ATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAAT-AGTGGAAAGAAAAG-CTTTTCTTGCGAAA
** ** * ** * * *
3592199 TGAAAGTGTCAATATCATGTATCGTTTTG-AGAAGACTA
121 CCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
* * * * * *
3592237 TGTTTATGGTGCCTAAACTTGAAAAGAATGGGGATTAGTATAACAATTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * * **
3592302 AGGGATAAACTTTGATTCTATC-AAAACAGAGGAAA-ACAAAGTTTTTCTCACGACAA-CAAAGC
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGA-AAAGCTTTTCTTGCGA-AACCAAAGC
* *
3592364 ATCGAA-GTCATGCATCCTAATGAAGGGAATG
128 ATC-AATATCATGTATCCTAATGAAGGGAATG
* * * * * * * * * * *
3592395 TGTTCT-TAGCT-CCCAAT-CTTAAAAGGAAT-AGAGATTGCGAAGA-GAATCGAGGCTTGTCAT
1 TGTT-TAT-GGTGCCTAATCCTGAAAA-GAATGAGAG-TAG-TATGACTATTC-ATGTTTGTCTT
* ** * * *** * * * * * ** **
3592455 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAG-GCAATGAAAAGATTTCCATGTAAAAGAA
60 ATTTAAGAGACAAACTTTGATTCTATCAAAAAT-AGTGGAAAGAAAAGCTTTTCTTGCGAAACCA
* *
3592519 AATCATCAATAT--TGCTTATCTTAATG-AGGAGAATG
124 AAGCATCAATATCATG--TATCCTAATGAAGG-GAATG
* * * * * * *
3592554 TGTTTATAGTTCTTAATCAC--AAAATAAATGATGA-TCGT-T-ACTAGAATCCATGTTTGTCTC
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGA-GAGTAGTATGACT---ATTCATGTTTGTCTT
* * * ** * * * *
3592614 ATTTGAGACACGAACTTACACTT-TA-CAAAAATTAGTGGGAAG-AAAGCCTTCCTTGCGAAATC
60 ATTTAAGAGACAAACTTTGA-TTCTATCAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAACC
* * * * *
3592676 AAAGCATCAATATCGTGTATCCTTAT-AAGCAGACTA
123 AAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
* * * * *
3592712 TGTTTATGGTGCTTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATTTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * ** *
3592777 AGAGACAAACATTGATTCTATCAAAAATGGTGGAAA-AAAACCTTTTCTTTTGACACCAAAGCAT
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCAT
* * * *
3592841 CAATGTCATGCATCTTAATGAAAGGAATG
130 CAATATCATGTATCCTAATGAAGGGAATG
* * * * * * * * * ** * *
3592870 TGTTCT-TAGCT-CCCAATCTTTAAAGGAAT-AGAG-ACTGTGACAAGAATCCGGGCTTGTCATA
1 TGTT-TAT-GGTGCCTAATCCTGAAAAGAATGAGAGTAGTATGAC---TATTCATGTTTGTCTTA
* ** * *** * * * * **
3592931 TTTAAGGGATGAATTTTGATT-TAAGGAAAATAG-GGCAAAGAAAAGATTTCCATGCAAAAGAAA
61 TTTAAGAGACAAACTTTGATTCTATCAAAAATAGTGG-AAAGAAAAGCTTTTCTTGCGAAACCAA
* * * *
3592994 ATCATCAATATCATTTATCTTAATG-AGGTGAATA
125 AGCATCAATATCATGTATCCTAATGAAGG-GAATG
* * * * * * *
3593028 TGTTTATAGTTCTTAATCAC--AAAATAAATGA-AG-A-TCATTACTAGAATACGTGTTTGTCTT
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCTT
* * * * * ** * **
3593088 ATTTGAG-GAACGAACTTAGACTT-TA-CAAAACTCGATGGGGAG-AAAGATTTTCTTGTAAAAC
60 ATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAATAG-TGGAAAGAAAAGCTTTTCTTGCGAAAC
* ** * * * *
3593149 CAAAGCATCAATATCGTGTATTGT-TTCG-AGAAGACTA
122 CAAAGCATCAATATCATGTATCCTAAT-GAAG-GGAATG
** * * * * * *
3593186 TGTTTATGGTGTGTAAACCTAAAAAAAATGGGGATTAGTATAACTATTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * ** *
3593251 AGGGATAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTGCTCACGACAA-CAAATCA
65 AGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGA-AACCAAAGCA
* *
3593315 TCAATGTCATGCATCCTAATGAAGGGAATG
129 TCAATATCATGTATCCTAATGAAGGGAATG
* * * * * * ** * * *
3593345 TGTTCT-TAGCT-CCCAATCTTG-AAAGCAATAGAGACT-GCAACGAGAATTGATGCTTGTCATA
1 TGTT-TAT-GGTGCCTAATCCTGAAAAG-AAT-GAGAGTAG-TATGACTATTCATGTTTGTCTTA
* ** * * *** * * * * * **
3593406 TTTATGAGATGAATTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTCCGTGCAAAAGAAA
61 TTTAAGAGACAAACTTTGATTCTATCAAAAAT-AGTGGAAAGAAAAGCTTTTCTTGCGAAACCAA
* * *
3593470 ATCATCAATATCATTTATCCTAATG-AGGAAAATG
125 AGCATCAATATCATGTATCCTAATGAAGG-GAATG
* * ** **
3593504 T-TAATATGGTGCCTAATCAC--AAAATGAATGA-AG-A-TCATTACTAGAAGCCAAATTTGTCT
1 TGT-TTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGTCT
* * * * *
3593563 TATTTGAG-GCACGAACTTAGACTT-TAT-AAAAAT--TGGTAAGAAGAAAAGCCTTTCTTCCGA
59 TATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAATAGTGG--A-AAGAAAAGCTTTTCTTGCGA
** *** ** ** *
3593623 AACCAAAGTGTCAATATGGCGTATCCTTCTG-AGAAAACTA
119 AACCAAAGCATCAATATCATGTATCCTAATGAAGGGAA-TG
* * * * * *
3593663 TGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATTACTATTCATATTTATCGTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * *
3593728 AGA-ACAAACTTTGATTCTATCAAAAA-CGATGGAAGGAAAAGCTTTTCTTGCGACACAAAAGCA
65 AGAGACAAACTTTGATTCTATCAAAAATAG-TGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCA
* * * *
3593791 TTAATGTCATGTATTCTAATGAAGGAAATG
129 TCAATATCATGTATCCTAATGAAGGGAATG
* * * * * * **
3593821 TGTTCT-TGGCT-CCAAAT-CTCGAAAAGAATG-GAGATTGTTATGA-GAATCGATGCTAGTCAA
1 TGTT-TATGG-TGCCTAATCCT-GAAAAGAATGAGAG-TAG-TATGACTATTC-ATGTTTGTCTT
* ** * * *** * * * * ** **
3593881 ATTTAAGGGATGAATTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTCCATGTAAAAGAA
60 ATTTAAGAGACAAACTTTGATTCTATCAAAAAT-AGTGGAAAGAAAAGCTTTTCTTGCGAAACCA
* * ** * *
3593945 AATCTTTGATATCATTTATCCTAATGAAGAGAATG
124 AAGCATCAATATCATGTATCCTAATGAAGGGAATG
* * * * *
3593980 TGTTTATAGTTCTTAATCAC--AAAATGAATGA-AG-A-TCATTACTAGAATCCAT-TTT-TCCT
1 TGTTTATGGTGCCTAATC-CTGAAAA-GAATGAGAGTAGT-ATGACT---ATTCATGTTTGT-CT
* * ** * * * * *
3594038 CATTTAAG-GCACGAACTTACACTT-TA-CAAAAATTGGTGGGATG-AGAGCCTTTCTTGCGAAA
59 TATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-TAGTGGAAAGAAAAGCTTTTCTTGCGAAA
* * * * *
3594099 CCAAAGCGTCAATATCATGTATCCTTATG-AGAAGACTA
121 CCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATG
* * * * *
3594137 TGTTTATGTTGCCTAAGCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
1 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GAGAGTAGTATGACTATTCATGTTTGTCTTATTTA
* * * *
3594202 AGAGATAAACTTTGATTCTATCAAAAATGAG-GGGAA-AAAAGCTTCTCTTGC-AACACTAAAGC
65 AGAGACAAACTTTGATTCTATCAAAAAT-AGTGGAAAGAAAAGCTTTTCTTGCGAA-ACCAAAGC
* * * *
3594264 ATCAATGTCATGTATCCTAATAAAGGAAATA
128 ATCAATATCATGTATCCTAATGAAGGGAATG
3594295 TGTT
1 TGTT
3594299 ATTGGCTCCC
Statistics
Matches: 7209, Mismatches: 2364, Indels: 1752
0.64 0.21 0.15
Matches are distributed among these distances:
141 14 0.00
142 52 0.01
143 17 0.00
144 3 0.00
145 7 0.00
146 1 0.00
148 1 0.00
149 1 0.00
151 3 0.00
152 1 0.00
153 10 0.00
154 92 0.01
155 40 0.01
156 158 0.02
157 920 0.13
158 2471 0.34
159 2787 0.39
160 295 0.04
161 96 0.01
162 38 0.01
163 5 0.00
164 24 0.00
165 56 0.01
166 11 0.00
167 34 0.00
168 64 0.01
169 6 0.00
170 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (158 bp):
TGTTTATGGTGCCTAATCCTGAAAAGAATGAGAGTAGTATGACTATTCATGTTTGTCTTATTTAA
GAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATC
AATATCATGTATCCTAATGAAGGGAATG
Found at i:3595413 original size:20 final size:20
Alignment explanation
Indices: 3595388--3595440 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
3595378 ATTGGGCACA
** *
3595388 ATGTATCGATACTTTTTACC
1 ATGTATCGATACAATGTACC
*
3595408 ATGTATCGATACAATGTCCC
1 ATGTATCGATACAATGTACC
3595428 ATGTATCGATACA
1 ATGTATCGATACA
3595441 TTTCACTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACAATGTACC
Found at i:3595512 original size:19 final size:20
Alignment explanation
Indices: 3595469--3595521 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
3595459 CTGCCAGTTT
*
3595469 CATGTATCGATATAATTGAG
1 CATGTATCGATACAATTGAG
*
3595489 TATGTATCGATACAA-TGAG
1 CATGTATCGATACAATTGAG
3595508 CATGTATCGATACA
1 CATGTATCGATACA
3595522 TCTAGATGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:3596381 original size:24 final size:24
Alignment explanation
Indices: 3596349--3596394 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
3596339 TGGAAAGAAA
3596349 ACCCTTTCTTGCGACACCAATGAC
1 ACCCTTTCTTGCGACACCAATGAC
3596373 ACCCTTTCTTGCGACACCAATG
1 ACCCTTTCTTGCGACACCAATG
3596395 CATCAATGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.24, C:0.37, G:0.13, T:0.26
Consensus pattern (24 bp):
ACCCTTTCTTGCGACACCAATGAC
Found at i:3596865 original size:498 final size:497
Alignment explanation
Indices: 3595882--3596866 Score: 1277
Period size: 500 Copynumber: 2.0 Consensus size: 497
3595872 AAAAAGCTTC
* *
3595882 TCTTGCGACAACAAAGCATCAATGTCATGTATCCTATTGAAGGGAATGTGTTCATGGTTCCAAAT
1 TCTTGCGACAACAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCATGGCTCCAAAT
* * * *
3595947 CTTGAAAATAGTTGAGATAGTTACGAGAAGCGATGCCTGTCACATTTAAGGACGAATTTTGATTT
66 CTTGAAAAGAATGGAGATAGTGACGAGAAGCGATGCCTGTCACATTTAAGGACGAATTTTGATTT
* *
3596012 TAAGAAAAATAGGGCAAAAAAAGATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAAT
131 TAAGAAAAATAGGGCAAAAAAAGATTTCCATGCAAAAGAAAATAATCAATATCATTTACCCTAAT
* * *
3596077 GAGGAGAATGTGTTTATAGTTCTTAAACACAAAATGAACGAAGATCACTATTAGAATCCATGTTT
196 GAGGAGAATGTGTTTATAGTTCTTAAACACAAAATGAACGAAGATCACTACTAGAATCCACGCTT
* * * * **
3596142 GTCTCATTTGAGGCATGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAA
261 GACTCATTTAAGGCACGAACTTACACTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTACGAAA
* *
3596207 CCAAAGCGTCAATATTGTGTATCCTTATGAGAAGACTATGTTTATGGCGCCTAATCCTAAAAAGA
326 CCAAAGCGTAAATATTGTGTATCCTTATGAGAAGACTATGTTTATGACGCCTAATCCTAAAAAGA
* * * *
3596272 ATGGGGATTGTATAATTATTCATGTTTGTCTTCTTTAAGAGATAAACTTTGATTCTATAAAAAAT
391 ATGGGGATTGTATAACTATTCATATTTGTCTTATTTAAGAGAAAAACTTTGATTCTATAAAAAAT
* *
3596337 GGTGGAAAGAAAACCCTTTCTTGCGACACCAATGACACCCTT
456 GGGGGAAAGAAAACCCTTTCTTGAGACACCAATGACACCCTT
* * *
3596379 TCTTGCGACACCAATGCATCAATGTCATGTATCCTAAT-AAGGAGAA-GTGTTCTTGGCTCTC-A
1 TCTTGCGACAACAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTCATGGCTC-CAA
* * ** ** * * *
3596441 ATCTTGAAAAGAATGGAGACT-GTGATGAGAATCGATGTTTGTCTTATTTTAGGTATGAGTTTTG
64 ATCTTGAAAAGAATGGAGA-TAGTGACGAGAAGCGATGCCTGTCACATTTAAGG-ACGAATTTTG
* * * * * *
3596505 ATTTTAAGGAATATCGAGTG-AAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTAC
127 ATTTTAAGAAAAAT--AGGGCAAAAAAAGATTTCCATGCAAAAGAAAATAATCAATATCATTTAC
* * *
3596569 CCTAATGAGGAGAATGTGTTTATAGTTCTTTATCACAAAATGAATGAAGATCACATTACTAGAAT
190 CCTAATGAGGAGAATGTGTTTATAGTTCTTAAACACAAAATGAACGAAGATCAC--TACTAGAAT
** *
3596634 CCACGCTTGACTTTTTTAAGGCACGAACTTAGACATTT-CAAAAATTGGTGGGAA-AAAACCTTT
253 CCACGCTTGACTCATTTAAGGCACGAACTTACAC-TTTACAAAAATTGGTGGGAAGAAAACCTTT
* * * *
3596697 CTTACGAAACCAAAGTGTAAATATTGTGTATCCTTTTGAGAAGACTATGTTTATGATGCCTTATC
317 CTTACGAAACCAAAGCGTAAATATTGTGTATCCTTATGAGAAGACTATGTTTATGACGCCTAATC
* * *
3596762 CTGAAAAGAATGGGGATTAGTATGACTATTCATATTTGTCTTATTTGAGAGAAAAACTTTGATTC
382 CTAAAAAGAATGGGGATT-GTATAACTATTCATATTTGTCTTATTTAAGAGAAAAACTTTGATTC
* * * *
3596827 TATCAAAAATGGGGGAGA-AAAAGCTTTTCTT-AGACACCAA
446 TATAAAAAATGGGGGAAAGAAAACCCTTTCTTGAGACACCAA
3596867 AGCATCAATG
Statistics
Matches: 418, Mismatches: 60, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
496 56 0.13
497 60 0.14
498 98 0.23
499 96 0.23
500 105 0.25
501 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (497 bp):
TCTTGCGACAACAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCATGGCTCCAAAT
CTTGAAAAGAATGGAGATAGTGACGAGAAGCGATGCCTGTCACATTTAAGGACGAATTTTGATTT
TAAGAAAAATAGGGCAAAAAAAGATTTCCATGCAAAAGAAAATAATCAATATCATTTACCCTAAT
GAGGAGAATGTGTTTATAGTTCTTAAACACAAAATGAACGAAGATCACTACTAGAATCCACGCTT
GACTCATTTAAGGCACGAACTTACACTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTACGAAA
CCAAAGCGTAAATATTGTGTATCCTTATGAGAAGACTATGTTTATGACGCCTAATCCTAAAAAGA
ATGGGGATTGTATAACTATTCATATTTGTCTTATTTAAGAGAAAAACTTTGATTCTATAAAAAAT
GGGGGAAAGAAAACCCTTTCTTGAGACACCAATGACACCCTT
Found at i:3601970 original size:42 final size:42
Alignment explanation
Indices: 3601915--3602033 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3601905 TTCTTCTCTC
* *
3601915 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3601957 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3601999 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3602034 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3601974 original size:12 final size:11
Alignment explanation
Indices: 3601948--3602023 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3601938 TCTATTATCT
*
3601948 CTCCTGTCTCTC
1 CTCCTATCTC-C
3601960 CTCCTATCATCC
1 CTCCTATC-TCC
3601972 CTCCTATCT--
1 CTCCTATCTCC
*
3601981 CTACTATCT--
1 CTCCTATCTCC
*
3601990 CTCCTGTCTCTC
1 CTCCTATCTC-C
3602002 CTCCTATCATCC
1 CTCCTATC-TCC
*
3602014 CTCCTCTCTC
1 CTCCTATCTC
3602024 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:3601975 original size:24 final size:24
Alignment explanation
Indices: 3601939--3602024 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3601929 CCTCCTCTCT
* *
3601939 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3601963 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
3601984 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3602005 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3602025 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3601999 original size:18 final size:18
Alignment explanation
Indices: 3601930--3602000 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3601920 CCTGTCATCC
* *
3601930 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
3601948 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
3601970 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
3601990 CTCCTGTCTCT
1 CTCCTGTCTCT
3602001 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3606328 original size:476 final size:475
Alignment explanation
Indices: 3604337--3613603 Score: 11421
Period size: 475 Copynumber: 19.5 Consensus size: 475
3604327 TCATTTTAGG
* * * *
3604337 GAAAATCATCAATATCATTTATTCTAAAGAAGAGAATGTGTTTATAGTTCTTAATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * *
3604402 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTACACTTTACGAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * **
3604467 TGCTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACT
131 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACT
* * *
3604532 ATGTTTATGGTGCCTAATCCTAAAAAGAATAGAGATTAGTATGACTATTGATGTTTGTCTTATTT
196 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * *
3604597 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCCTTTCTTGCGACACTAATA-C
261 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAA-AGC
* * * * * *
3604661 ATCAATGTCATGTATTCTAGTCAGGGGAATGT-TTCCTGGTTCCAAATCTTGAAAAGAATGGAGA
324 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
* ** * * * *
3604725 TTGTTACAAGAATCGATACTTGTCTTTTTTAAGGGT-TGAACTTTGATTTTAAGGAAAATTGGGC
389 CTGTTATGAGAATCGATGCTTGTCTTATTTAA-GGTATGAATTTTGATTTTAAGGAAAATAGGGC
*
3604789 AAAGAAAAGATTTCCTTGGC-AAA
453 AAAGAAAAGATTTCCAT-GCTAAA
* * * * * * *
3604812 GAAAATCATCAATATCATTTATCGTGACGAAGAGAATGTGTTTATAGTTCTTACTCACAAAATAA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * *
3604877 AAGAATATCACTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * ** *
3604942 AGGTGAGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGCATCCTTATGAGAAGACT
131 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACT
* * * * * * * *
3605007 AGGCTTATGGTACCTAATCTTGAAAAAAAATGAGGATTAGTATGACCATTGATGTTTGTCTTATT
196 ATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * ** * *
3605072 TAAGAGATAAACTTTGATTCAATCAAAAACGGTGGAAAGAAAAGCTTTTCTTATGATACCAATGC
260 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAGC
* ***
3605137 ATCAATGTCATGTATCCTAATGAAGGGAATGCGTTCTTGGTTTTAAATCTTGAAAAGAATGGAGA
324 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * ** * * * * **
3605202 CTATTACGAGAATCGATTTTTATCATATTTAAGGGATGAATTTTGATTTTAAGTAGGATAGGGCA
389 CTGTTATGAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAAAATAGGGCA
*
3605267 AAGAAAAGATTTCTATGC-AAA
454 AAGAAAAGATTTCCATGCTAAA
* *
3605288 TGAAAATCATCAATATCATTTATCCTAATAAGGAAAATGAGTTTATAGTGTC-TAATCACAAAAT
1 -GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGT-TCTTAATCACAAAAT
* * * *
3605352 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTACACTTTACAAAA
64 GAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAA
* * *
3605417 ATTGGT-GAAAGAAAGCCTTCCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGA
129 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGA
* ** * * * *
3605481 GTATGTTTATGGCACCTCATCTTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTAT
194 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* *
3605546 TTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGGAAAAAAACCTTTTCTT-CTGACACC-AA
259 TTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GGAAAAAAAGCTTTTCTTGC-GACACCAAA
* * * * * * * * * *
3605609 GCTTCAATGTCATCTATCTTAGTGAAGGGAATGTCTTTTTGGTTCTCGATCTTGTAAAGAGTGGA
322 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA
* * *
3605674 GACTGTTATGAGAATCAATGCTTATCTTTTTTAAGCG-ATGAATTTTGATTTTAAGGAAAATAGG
387 GACTGTTATGAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTTTGATTTTAAGGAAAATAGG
* *
3605738 GCAAAAAAAAGATTTCCATGCAAAA
451 GCAAAGAAAAGATTTCCATGCTAAA
* * *
3605763 GAAAATTATCAATATCATTTATCCTCATAAGGAGAATGAGTTTATAGTTCTTAATCA-AAAATGG
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAAT-G
* * * * *
3605827 AATGAAGATCATTACTAGAATCCATGTTTTTCTTATTTAAGGAATGAACTTTGACTTTACAAAAA
65 AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * * * **
3605892 TCGGTGGGGAGATAGCCTTTCTTGCGAAATCC-AAGTGTCAATACCATGTATCGTTCCGAGAAGA
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGTGTCAATATCGTGTATCCTTATGAGAAGA
* * *
3605956 CTATGTTTATAGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTCT
194 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * * *
3606021 TTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAACCCTTTCTTGCGACACCAATG
259 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAG
* *
3606086 CATCAATGTCATGTATCCTAATGAAGAGAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAG
323 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG
* * * * *
3606151 ACT-TTGATGAGAATCGATGTTTGTCTTATTTAAGGTATCAATTTTGATTTTAAGGAATATCGAG
388 ACTGTT-ATGAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAAAATAGGG
3606215 -AGAAGAAAAGATTTCCATGCTAAA
452 CA-AAGAAAAGATTTCCATGCTAAA
* * *
3606239 GAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTTCTTTATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * *
3606304 ATGAAGATCATTACTAGAATCCATGCTTGTCTTTTTTAAGGCACGAACTTAGACATTT-CAAAAA
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAC-TTTACAAAAA
* * * * *
3606368 TTGGTGGGAAGAATGCCTTTCTTACGAAACCAAAGTGTCAATATTGTGTATCCTTTTGTGAAGAC
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
* * *
3606433 TATGTTTATGATACCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATATTTGTCTTATT
195 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * *
3606498 TGAGAGAAAAACTTTGATTCTATCAAAAATGGGGGAGAAAAAGCTTTTCTTACGACACCAAAGCA
260 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCA
** ***
3606563 TCAATGTCATGTATCCTAATGAAGGGAATACGTTCTTGGTTTTAAATCTTGAAAAGAATGGAGAC
325 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * ** * * * * **
3606628 TATTACGAGAATCGATTTTTATCATATTTAAGGGATGAATTTTGATTTTAAGTAGGATAGGGCAA
390 TGTTATGAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAAAATAGGGCAA
*
3606693 AGAAAAGATTTCTATGC-AAA
455 AGAAAAGATTTCCATGCTAAA
* *
3606713 TGAAAATCATCAATATCATTTATCCTAATAAGGAAAATGAGTTTATAGTGTC-TAATCACAAAAT
1 -GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGT-TCTTAATCACAAAAT
* * * *
3606777 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTACACTTTACAAAA
64 GAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAA
* *
3606842 ATTGGT-GAAAGAAAGCCTTCCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGA
129 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGA
* ** * * * *
3606906 GTATGTTTATGGCACCTCATCTTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTAT
194 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * *
3606971 TTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGGAAAAAAACCTTTTCTT-CTGACACC-AG
259 TTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GGAAAAAAAGCTTTTCTTGC-GACACCAAA
* * * * * * * * *
3607034 GCTTCAATGTCATCTATCTTAGTGAAGGGAATGTCTTCTTGGTTCTCAGTCTTGTAAAGAGTGGA
322 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA
* * *
3607099 GACTGTTATGAGAATCAATGCTTATCTTTTTTAA-GTGATGAATTTTGATTTTAAGGAAAATAGG
387 GACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGT-ATGAATTTTGATTTTAAGGAAAATAGG
* *
3607163 GCAAAAAAAAGATTTCCAAGC-AGAA
451 GCAAAGAAAAGATTTCCATGCTA-AA
* * * * *
3607188 GAAAATTATCAATATCATTTATCCAAATAAGGAGATTGAGTTTAGAGTTCTTAATCA-AAAATTG
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAA-TG
* ** * * *
3607252 AATGAAGATCATTACTAGAATCCATGTTTTTCTTATTAAAGGAATGAACTTTGACTTTACAAAAA
65 AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * * * *
3607317 TCGGTGGGGAGATAGCCTTTCTTGCGAAATCC-AAGTGTCAATACCATGTATCGTTCTGAGAAGA
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGTGTCAATATCGTGTATCCTTATGAGAAGA
* *
3607381 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTCT
194 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * * ** *
3607446 TTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCCCTTCTTGCGACACCAATG
259 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAG
** *
3607511 CATCAATGTCATGTATCCTAATGAAGACAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAG
323 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG
* * * * *
3607576 ACTGTGATGAGAATCGATGTTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAATATCGAGC
388 ACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAAAATAGGGC
*
3607641 GAAGAAAAGATTTCCATGCTAAA
453 AAAGAAAAGATTTCCATGCTAAA
* * *
3607664 GAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTTCTTTATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * *
3607729 ATGAAGATCATTACTAGAATCCACGCTTGTCTTTTTTAAGGCACGAACTTAGACATTT-CAAAAA
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAC-TTTACAAAAA
* * * *
3607793 TTGGTGGGAAGAATGCCTTTCTTACGAAACCAAAGTGTCAATATTGTGTATCCTTTTGAGAAGAC
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
* * *
3607858 TATGTTTATGATACCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATATTTGTCTTATT
195 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * ** *
3607923 TGAGAGAAAAACTTTGATTCTATCAAAAATGGGGGAGAAAAAGCTTTTCTTATGACACTAAAGCA
260 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCA
* ***
3607988 TCAATGTCATGTATCCTAATGAAGGGAATGCGTTCTTGGTTTTAAATCTTGAAAAGAATGGAGAC
325 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * ** * * * * * **
3608053 TATTACGAGAATCGATTTTTATCATATTTAGGGGATGAATTTTGATTTTAAGTAGGATAGGGCAA
390 TGTTATGAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAAAATAGGGCAA
*
3608118 AGAAAAGATTTCTATGC-AAA
455 AGAAAAGATTTCCATGCTAAA
* * *
3608138 TGAAAATGATCAATATCATTTATCCTAATAAGGAAAATGAGTTTATAGTGTC-TAATCACAAAAT
1 -GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGT-TCTTAATCACAAAAT
* * *
3608202 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAA
64 GAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAA
* * *
3608267 ATTGGT-GAAAGAAAGCCTTCCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGA
129 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGA
* ** * * * *
3608331 GTATGTTTATGGCACCTCATCTTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTAT
194 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * *
3608396 TTAAGAGACAAACTTTCATTCTATTAAAAATGGTGGGAAAAAAACCTTTTCTT-CTGACACC-AA
259 TTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GGAAAAAAAGCTTTTCTTGC-GACACCAAA
* * * * * * ** * * *
3608459 GCTTCAATGTCATCTATCTTAGTGAAGGGAATGTCTTCTTGGTTCTCGGTCATGTAAAGAGTGGA
322 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA
* * *
3608524 GACTGTTATGAGAATCAATGCTTATCTTTTTTAAGCG-ATGAATTTTGATTTTAAGGAAAATAGG
387 GACTGTTATGAGAATCGATGCTTGTCTTATTTAAG-GTATGAATTTTGATTTTAAGGAAAATAGG
* *
3608588 GCAAAAAAAAGATTTCCATGCAAAA
451 GCAAAGAAAAGATTTCCATGCTAAA
* * *
3608613 GAAAATTATCAATATCATTTATCCTAATAAGGAGAATGAGTTTATAGTTCTTAATCA-TAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* ** * * *
3608677 ATGAAGATCATTACTAGAATCCATGTTTTTCTTATTAAAGGAATGAACTTTGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * * * *
3608742 CGGCGGGGAA-ATAGCCTTTCTTGCGAAATCC-AAGTGTCAATACCATGTATCGTTCTGAGAAGA
131 TGG-TGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGTGTCAATATCGTGTATCCTTATGAGAAGA
* * *
3608805 CTATGTTTATGGTGCCTAATCCTCAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTCT
194 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * * ** *
3608870 TTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCCCTTCTTGCGACACCAATG
259 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAG
**
3608935 CATCAATGTCATGTATCCTAATGAAGACAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG
323 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG
* * * * * *
3609000 ACTGTGATGAGAATCGATGTTTGTCTTATTTAAGGTATCAATTTTGATTTTAAGGAATATCGAG-
388 ACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAAAATAGGGC
3609064 AGAAGAAAAGATTTCCATGCTAAA
453 A-AAGAAAAGATTTCCATGCTAAA
* * * *
3609088 AAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTTCTTTATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * *
3609153 ATGAAGATCATTACTAGAATCCACGCTTGTCTTTTTTAAGGCACGAACTTAGACATTT-CAAAAA
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAC-TTTACAAAAA
* * * *
3609217 TTGGTGGGAAGAATGCCTTTCTTACGAAACCAAAGTGTCAATATTGTGTATCCTTTTGAGAAGAC
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
* * *
3609282 TATGTTTATGATACCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATATTTGTCTTATT
195 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * *
3609347 TGAGAGAAAAACTTTGATTCTATCAAAAATGGGGGAGAAAAAGCTTTTCTTACGACACCAAAGCA
260 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCA
* ***
3609412 TCAATGTCATGTATCCTAATGAAGGGAATGCGTTCTTGGTTTGAAATCTTGAAAAGAATGGAGAC
325 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * ** * * * * **
3609477 TATTACGAGAATCGATTTTTATCATATTTAAGGGATGAATTTTGATTTTAAGTAGGATAGGGCAA
390 TGTTATGAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAAAATAGGGCAA
*
3609542 AGAAAAGATTTCTATGC-AAA
455 AGAAAAGATTTCCATGCTAAA
* *
3609562 TGAAAATCATCAATATCATTTATCCTAATAAGGAAAATGAGTTTATAGTGTC-TAATCACAAAAT
1 -GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGT-TCTTAATCACAAAAT
* * *
3609626 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAA
64 GAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAA
* * * * * *
3609691 ATTTGT-GAAAGAAAGCCTTCCTTGCGAAACCAAAGTGTCAATATCATATATCCTTACGAGAAGA
129 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGA
* ** * * *
3609755 GTATGTTTATGGCACCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTAT
194 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* *
3609820 TTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGGAAAAAAACCTTTTCTT-CTGACACC-AA
259 TTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GGAAAAAAAGCTTTTCTTGC-GACACCAAA
* * * * * *** * *
3609883 GCTTCAATGTCATCTATCTTAGTGAAGGGAATGTCTTCTTGGTTCTTGATCTTGTAAAGAGTGGA
322 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA
* * *
3609948 GACTGTTATGAGAATCAATGCTTATCTTTTTTAA-GTGATGAATTTTGATTTTAAGGAAAATAGG
387 GACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGT-ATGAATTTTGATTTTAAGGAAAATAGG
* *
3610012 GCAAAAAAAAGATTTCCATGCAAAA
451 GCAAAGAAAAGATTTCCATGCTAAA
* * * *
3610037 GAAAATTATCAATATCATTTATCCTAATAATGAGAATGAGTTTATAGTTCTTAATCAAAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * * *
3610102 ATGAAGATCATTACTAGAATCCATGTTTTTCTTATTTAAGGAATGAACTTTGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * * * * *
3610167 CGGTGGGGAGATAGCCTTTCTTGCAAAATCC-AAGTGTCAATACCATGTATCGTTCTGAGAAGAC
131 TGGTGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
* *
3610231 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTCTT
195 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * * *
3610296 TAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCCTTTCTTGCAACACCAATGC
260 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAGC
** * *
3610361 ATCAATGTCATGTATCCTAATGAAGACAATGTGTTCTTGGCTCCCAATCTTGAAAACAATGGAGA
324 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGA
* * * * * *
3610426 CTGTAATGAGAATCGATGTTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAATATCGAGCG
389 CTGTTATGAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAAAATAGGGCA
3610491 AAGAAAAGATTTCCATGCTAAA
454 AAGAAAAGATTTCCATGCTAAA
* * * *
3610513 TAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTTCTTTATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
*** * *
3610578 ATGAAGATCATTACTAGAATCCACACTTGTCTTTTTTAAGGCACGAACTTAGACATTT-CAAAAA
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAC-TTTACAAAAA
* * * * *
3610642 TTGGTGGGAAGAATGCCTTTCTTACGAAACCAAAGTGTCAATATTGTGTATCCTTTTGAAAAGAC
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
* * *
3610707 TATGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAATATGACTATTCATATTTGTCTTATT
195 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * *
3610772 TGAGAGAAAAACTTTGATTCTATCAAAAATGGGGGAGAAAAAGCTTTTCTTACGACACCAAAGCA
260 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCA
* * *
3610837 TCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTCCCAATCTTGAAAAGAATGGAGAC
325 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
** * *
3610902 TGCAATGAGAATCGATGCTTGTCATT-TTTAGGGGATGAATTTTGATTTTAAGGAAAATAGGGCA
390 TGTTATGAGAATCGATGCTTGTC-TTATTTAAGGTATGAATTTTGATTTTAAGGAAAATAGGGCA
*
3610966 AAGAAAAGATTTACC-TGCAAAA
454 AAGAAAAGATTT-CCATGCTAAA
* * * * **
3610988 GAAAATTAGCAATATCATTTATCTTAATGAGGAGAATGAGTTTATAGTTTTTAATCGTAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * *
3611053 ATGAAGATAATTACTAGAATCCATGTTTGACTTATTTGAGGCACAAACGTAGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * ** * *
3611118 TGGTGGGAAGAAAGCCTTCCTAGCGAAACCAAAGCATCAATATAGTGTATCTTTATGAGAAGACT
131 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACT
* * *
3611183 ATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTTGTATGACTATTCATGTTTGTCTTATTT
196 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * * *
3611248 AATAGATAAACTTTGATTCGATCAGAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
261 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAGCA
* ** * *
3611313 TCAATGTCATGTATCCTAATGAAAGGAATGCATTCTTGGCTCCCAATCTTGAAAAGAGTGGAGAC
325 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGAC
* * * * * *
3611378 GGTTACGAGAATCGATGCTTGTGTTTTTTAAGGGT-CGAACTTTGATTTTAAGGAAAATTA-GGC
390 TGTTATGAGAATCGATGCTTGTCTTATTTAA-GGTATGAATTTTGATTTTAAGGAAAA-TAGGGC
* *
3611441 AAAGAAAAGATATCCATGGTAAA
453 AAAGAAAAGATTTCCATGCTAAA
* * * * *
3611464 GAAAATCATCATTATCGTTTATCCTAATAAGGAGAATGAGGTCATAGTTCTTAATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * *
3611529 ATGAAGATCAGTACTAGAATCCATATTTGTCTTATTTGAGGAACGAACTTAGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
** * * * * * *
3611594 CAGTGGGGAGAAAGCCTTTCTTGCAAAATCAAAGTGTCATTATCGTGT-TTCTTCTTGAGAAGAC
131 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTT-ATGAGAAGAC
* * * * * *
3611658 TACGTTTATGGTGCCTAATCCTGAAAAGAATGGGAATTAGTATCACTATTTATGTTTGTTTTATT
195 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* *
3611723 TAAGAGACAAACGTTGATTCTATC-AAAACGGTGGAAATAAAAGCTTTTCTTGCGACACCAAAGC
260 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAGC
* * * * *
3611787 ATCAATGTCATGTATCCTAAT-AATGGAAATGTGTTATTGGTTCCAAATCATGAAAACAATGGAG
324 ATCAATGTCATGTATCCTAATGAA-GGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG
* *
3611851 ACTGTTATGAGAATCGATGCTTGTCATATTTAAAGG-ATGAATTTTGATTTTAAGAAAAATAGGG
388 ACTGTTATGAGAATCGATGCTTGTCTTATTT-AAGGTATGAATTTTGATTTTAAGGAAAATAGGG
* * *
3611915 CCAAGAAAAGATTTTCATGTTAAA
452 CAAAGAAAAGATTTCCATGCTAAA
* * *
3611939 GAAAATTATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATTCTTAATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * * * *
3612004 ATGAAGATCATTTCTAGAACCCTTGTTTGTTTTATTTGAGGCACAAACTCAGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
* ** * * *
3612069 TGGTGAGAAGAAAGCCTTTCTTATGAAACCAAAGCAGTCAATATTGTGTATCCTTTTGAGAAGAC
131 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAG-TGTCAATATCGTGTATCCTTATGAGAAGAC
* * * * *
3612134 TATGTTTATGGTGCCTTATCCTGAAAAGATTGGGGATTACTATGAC--TTCATGTTTGTCTGATT
195 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * *
3612197 TAAGAGACAAAATTTGATTTTATCAAGAACGGTGGAAAAAAAAAGCTTTTCTTGCTACACCAAAG
260 TAAGAGACAAACTTTGATTCTATCAAAAATGGTGG--AAAAAAAGCTTTTCTTGCGACACCAAAG
* * *
3612262 CATGAAGGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTT-CCAATCTTGAAAAGAGTGGAG
323 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG
* * *
3612326 A-TGGTTATGAGAAT-GATGCTTGTCTTTTTTAAGGGT-TGAACTTTGATTTCAAGGAAAATTA-
388 ACT-GTTATGAGAATCGATGCTTGTCTTATTTAA-GGTATGAATTTTGATTTTAAGGAAAA-TAG
* *
3612387 GGCAAAGAAAAGATATCCATGGTAAA
450 GGCAAAGAAAAGATTTCCATGCTAAA
* *
3612413 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTCATGGTTCTTAATCACAAAAATG
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCAC-AAAATG
* * * * *
3612478 AATGAAGATCATTAGTAGAATCAATGTTTGTCTTATTTGAGGAATGAACTTACACTTTACAAAAA
65 AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAA
** * * * * * * *
3612543 ACGGTGGGGAGAAAACCTTTCTTGCGAAATCAAAATGTCAATATCGTGTATCATTTTGAAAAGAC
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
** *
3612608 TATGTTTATGGTGCCTAAT-CTAAAAAAGAATGATGATTAGTATAACTATTCATGTTTGTCTTAT
195 TATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * * *
3612672 TAAAGAGACAAACGTTGATTCTATCAAAAATGATGGAAAAAAAAAGCTTTTCTTGTGACACCAAA
259 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGG--AAAAAAAGCTTTTCTTGCGACACCAAA
* * * *
3612737 GCATCAATGTCATGTTTCCTAATGAGGGGAATGTGTTCTTGGTTCCAAATCTTGAAAACAATGGA
322 GCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGA
* * * *
3612802 GGCTGTTA-GAAGAATCGATGTTTGTCATATTTAAGGGATGAATTTTGATTTTAA-GAATAATAG
387 GACTGTTATG-AGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAA-AATAG
*
3612865 GGCAAAGAAAAGATTTCCATGCAAAA
450 GGCAAAGAAAAGATTTCCATGCTAAA
* * * * *
3612891 GAAAATCATTAATAACATTTATCCTAATG-GGAAGAATGTGTTTATAGTTCTTAAACACAAATTG
1 GAAAATCATCAATATCATTTATCCTAATGAGG-AGAATGAGTTTATAGTTCTTAATCACAAAATG
* **
3612955 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCGTGAACTTAGACTTTACAAAAA
65 AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * * * *
3613020 TTGGTGGGGAGAAAGCCTTTTTTGCGAAACCAACGCGTCAATATTGTGTATCCATAAGAGAAGAC
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
* * *
3613085 TATGTTTATGGTGCCTAATCCTAACAAAGAATGCGGATTAGTATGACTGTTAATGTTTGTCTTAT
195 TATGTTTATGGTGCCTAATCCTAA-AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* *
3613150 TTAAGAGACAAACTTTGATTCGATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGCG-CACCAAAG
259 TTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AAAAGCTTTTCTTGCGACACCAAAG
* * * *
3613214 CATCAATGTCATATATCCTATTGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAACAATGGAG
323 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAG
* * * *
3613279 A-TCGTTATGAGAATCGATGCTTGTCATATTTAGGGGATGAATTTTGCTTTTAA-GAAAAGTAGG
388 ACT-GTTATGAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAAAA-TAGG
* * * *
3613342 ACAAAGGAAAGATTTTCATGCAAAA
451 GCAAAGAAAAGATTTCCATGCTAAA
* * * * * *
3613367 AAAAATCATCAATATCGTTTATCCTAATGAGGATAATGTGTTTATAGTTCTTAAACACAAATTGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* *
3613432 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * *
3613497 TGGTGGGGAGAAAGCCTTTCTTGCAAAACCAACGCGTCAATATCGTGTATCCTTATGAGAAGACT
131 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACT
* * * *
3613562 ACGTTTATGGTGCCTAATTCTGAAAAGAATGAGGATTAGTAT
196 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT
3613604 TATCGCAACG
Statistics
Matches: 7559, Mismatches: 1110, Indels: 246
0.85 0.12 0.03
Matches are distributed among these distances:
473 92 0.01
474 1702 0.23
475 2643 0.35
476 2515 0.33
477 433 0.06
478 174 0.02
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (475 bp):
GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACT
ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCTTTTCTTGCGACACCAAAGCAT
CAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACT
GTTATGAGAATCGATGCTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAAAATAGGGCAAA
GAAAAGATTTCCATGCTAAA
Found at i:3606398 original size:951 final size:950
Alignment explanation
Indices: 3604337--3613603 Score: 11493
Period size: 951 Copynumber: 9.8 Consensus size: 950
3604327 TCATTTTAGG
* * * *
3604337 GAAAATCATCAATATCATTTATTCTAAAGAAGAGAATGTGTTTATAGTTCTTAATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * *
3604402 ATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTACACTTTACGAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * **
3604467 TGCTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACT
131 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACT
* * *
3604532 ATGTTTATGGTGCCTAATCCTAAAAAGAATAGAGATTAGTATGACTATTGATGTTTGTCTTATTT
196 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* *
3604597 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCCTTTCTTGCGACACTAATA-C
261 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAA-AGC
* * * * *
3604661 ATCAATGTCATGTATTCTAGTCAGGGGAATGT-TTCCTGGTTC-CAAATCTTGAAAAGAATGGAG
325 ATCAATGTCATGTATCCTAATGAAGGGAATGTCTTCTTGGTTCTC-AATCTTGAAAAGAATGGAG
* ** * * * * *
3604724 ATTGTTACAAGAATCGATACTTGTCTTTTTTAAGGGTTGAACTTTGATTTTAAGGAAAATTGGGC
389 ACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGC
* * ** *
3604789 AAAGAAAAGATTTCCTTGGC-AAAGAAAATCATCAATATCATTTATCGTGACGAA-GAGAATGTG
454 AAAGAAAAGATTTCCAT-GCAAAAGAAAATCATCAATATCATTTATCCT-AATAAGGAGAATGAG
* * * * * *
3604852 TTTATAGTTCTTACTCACAAAATAAAAGAATATCACTACTAGAATCCATGTTTGTCTTATTTGAG
517 TTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAG
* * * * **
3604917 GCATGAACTTAGACTTTACAAAAATAGGTGAGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAA
582 GCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAA
* * * * * * *
3604982 TATCGTGCATCCTTATGAGAAGACTAGGCTTATGGTACCTAATCTTGAAAAAAAATGAGGATTAG
647 TATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAG
* * * * *
3605047 TATGACCATTGATGTTTGTCTTATTTAAGAGATAAACTTTGATTCAATCAAAAACGGTGGAAAGA
711 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-A
** * * *
3605112 AAAGCTTTTCTTATGATACCAATGCATCAATGTCATGTATCCTAATGAAGGGAATGCGTTCTTGG
775 AAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
** * * * * *
3605177 TTTTAAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATTTTTATCATATTTAAGGGATGAA
840 TTCCAAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATGAA
* ** *
3605242 TTTTGATTTTAAGTAGGATAGGGCAAAGAAAAGATTTCTATGCAAA
905 TTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* *
3605288 TGAAAATCATCAATATCATTTATCCTAATAAGGAAAATGAGTTTATAGTGTC-TAATCACAAAAT
1 -GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGT-TCTTAATCACAAAAT
* * * *
3605352 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTACACTTTACAAAA
64 GAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAA
* * *
3605417 ATTGGT-GAAAGAAAGCCTTCCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGA
129 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGA
* ** * * * *
3605481 GTATGTTTATGGCACCTCATCTTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTAT
194 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* *
3605546 TTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGGAAA-AAAACCTTTTCTT-CTGACACC-A
259 TTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GGAAAGAAAACCTTTTCTTGC-GACACCAA
* * * * * * * *
3605608 AGCTTCAATGTCATCTATCTTAGTGAAGGGAATGTCTTTTTGGTTCTCGATCTTGTAAAGAGTGG
322 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTCTTCTTGGTTCTCAATCTTGAAAAGAATGG
* * * *
3605673 AGACTGTTATGAGAATCAATGCTTATCTTTTTTAAGCGATGAATTTTGATTTTAAGGAAAATAGG
387 AGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGG
* * *
3605738 GCAAAAAAAAGATTTCCATGCAAAAGAAAATTATCAATATCATTTATCCTCATAAGGAGAATGAG
452 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGAG
*
3605803 TTTATAGTTCTTAATCA-AAAATGGAATGAAGATCATTACTAGAATCCATGTTTTTCTTATTTAA
517 TTTATAGTTCTTAATCACAAAAT-GAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAA
* * * * * *
3605867 GGAATGAACTTTGACTTTACAAAAATCGGTGGGGAGATAGCCTTTCTTGCGAAATCC-AAGTGTC
581 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGTGTC
* * * ** *
3605931 AATACCATGTATCGTTCCGAGAAGACTATGTTTATAGTGCCTAATCCTAAAAAGAATGGGGATTA
645 AATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * *
3605996 GTATGAGTATTCATGTTTGTCTTCTTTAAGAGATAAACTTTGATTCTATCAAAAATGGTGGAAAG
710 GTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-
* * * *
3606061 AAAACCCTTTCTTGCGACACCAATGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTCTTG
774 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTG
* * * *
3606126 GCTCCCAATCTTGAAAAGAATGGAGACT-TTGATGAGAATCGATGTTTGTCTTATTTAAGGTATC
839 GTTCCAAATCTTGAAAAGAATGGAGACTGTT-ATGAGAATCGATGTTTGTCTTATTTAAGGGATG
* * *
3606190 AATTTTGATTTTAAGGAATATCGAG-AGAAGAAAAGATTTCCATGCTAAA
903 AATTTTGATTTTAAGGAAAATAGGGCA-AAGAAAAGATTTCCATGC-AAA
* * *
3606239 GAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTTCTTTATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * *
3606304 ATGAAGATCATTACTAGAATCCATGCTTGTCTTTTTTAAGGCACGAACTTAGACATTT-CAAAAA
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAC-TTTACAAAAA
* * * * *
3606368 TTGGTGGGAAGAATGCCTTTCTTACGAAACCAAAGTGTCAATATTGTGTATCCTTTTGTGAAGAC
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
* * *
3606433 TATGTTTATGATACCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATATTTGTCTTATT
195 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * * * *
3606498 TGAGAGAAAAACTTTGATTCTATCAAAAATGGGGGAGA-AAAAGCTTTTCTTACGACACCAAAGC
260 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGC
* * *
3606562 ATCAATGTCATGTATCCTAATGAAGGGAAT-ACGTTCTTGGTTTTAAATCTTGAAAAGAATGGAG
325 ATCAATGTCATGTATCCTAATGAAGGGAATGTC-TTCTTGGTTCTCAATCTTGAAAAGAATGGAG
* * ** * * * **
3606626 ACTATTACGAGAATCGATTTTTATCATATTTAAGGGATGAATTTTGATTTTAAGTAGGATAGGGC
389 ACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGC
* * *
3606691 AAAGAAAAGATTTCTATGCAAATGAAAATCATCAATATCATTTATCCTAATAAGGAAAATGAGTT
454 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGAGTT
* * *
3606756 TATAGTGTC-TAATCACAAAATGAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGG
519 TATAGT-TCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGG
* * * *
3606820 CACAAACTTACACTTTACAAAAATTGGT-GAAAGAAAGCCTTCCTTGCGAAACCAAAGTGTCAAT
583 CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAAT
* ** * * *
3606884 ATCGTGTATCCTTATGAGAAGAGTATGTTTATGGCACCTCATCTTGAAAAGAATGGGGATTAGTA
648 ATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTA
* *
3606949 TGACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGGAAAAAA
713 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GGAAAAAA
* * * * * * *
3607014 ACCTTTTCTT-CTGACACC-AGGCTTCAATGTCATCTATCTTAGTGAAGGGAATGTCTTCTTGGT
777 AGCTTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGT
* * * * * * * *
3607077 TCTC-AGTCTTGTAAAGAGTGGAGACTGTTATGAGAATCAATGCTTATCTTTTTTAAGTGATGAA
841 TC-CAAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATGAA
* *
3607141 TTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTCCAAGCAGAA
905 TTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCA-AA
* * * * *
3607188 GAAAATTATCAATATCATTTATCCAAATAAGGAGATTGAGTTTAGAGTTCTTAATCA-AAAATTG
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAA-TG
* ** * * *
3607252 AATGAAGATCATTACTAGAATCCATGTTTTTCTTATTAAAGGAATGAACTTTGACTTTACAAAAA
65 AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * * * *
3607317 TCGGTGGGGAGATAGCCTTTCTTGCGAAATCC-AAGTGTCAATACCATGTATCGTTCTGAGAAGA
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGTGTCAATATCGTGTATCCTTATGAGAAGA
* *
3607381 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTCT
194 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* ** *
3607446 TTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCCCTTCTTGCGACACCAATG
259 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAG
** * * *
3607511 CATCAATGTCATGTATCCTAATGAAGACAATGTGTTCTTGGCTCCCAATCTTGAAAAGAATGGAG
324 CATCAATGTCATGTATCCTAATGAAGGGAATGTCTTCTTGGTTCTCAATCTTGAAAAGAATGGAG
* * * * * *
3607576 ACTGTGATGAGAATCGATGTTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAATATCGAGC
389 ACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGC
* * * * *
3607641 GAAGAAAAGATTTCCATGCTAAAGAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTT
454 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGAGTT
* * * *
3607706 TATAGTTCTTTATCACAAAATGAATGAAGATCATTACTAGAATCCACGCTTGTCTTTTTTAAGGC
519 TATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGC
* *
3607771 ACGAACTTAGACATTT-CAAAAATTGGTGGGAAGAATGCCTTTCTTACGAAACCAAAGTGTCAAT
584 ACGAACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAAT
* * * *
3607835 ATTGTGTATCCTTTTGAGAAGACTATGTTTATGATACCTAATCCTAAAAAGAATGGGGATTAGTA
648 ATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTA
* * * * *
3607900 TGACTATTCATATTTGTCTTATTTGAGAGAAAAACTTTGATTCTATCAAAAATGGGGGAGAAAAA
713 TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAA
** * * *
3607965 GCTTTTCTTATGACACTAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGCGTTCTTGGTTT
778 GCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTC
* * * * * * *
3608030 TAAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATTTTTATCATATTTAGGGGATGAATTT
843 CAAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATGAATTT
* ** *
3608095 TGATTTTAAGTAGGATAGGGCAAAGAAAAGATTTCTATGCAAA
908 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
* * *
3608138 TGAAAATGATCAATATCATTTATCCTAATAAGGAAAATGAGTTTATAGTGTC-TAATCACAAAAT
1 -GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGT-TCTTAATCACAAAAT
* * *
3608202 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACACTTTACAAAA
64 GAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAA
* * *
3608267 ATTGGT-GAAAGAAAGCCTTCCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTACGAGAAGA
129 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGA
* ** * * * *
3608331 GTATGTTTATGGCACCTCATCTTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTTAT
194 CTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * *
3608396 TTAAGAGACAAACTTTCATTCTATTAAAAATGGTGGGAAA-AAAACCTTTTCTT-CTGACACC-A
259 TTAAGAGACAAACTTTGATTCTATCAAAAACGGT-GGAAAGAAAACCTTTTCTTGC-GACACCAA
* * * * ** * * *
3608458 AGCTTCAATGTCATCTATCTTAGTGAAGGGAATGTCTTCTTGGTTCTCGGTCATGTAAAGAGTGG
322 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTCTTCTTGGTTCTCAATCTTGAAAAGAATGG
* * * *
3608523 AGACTGTTATGAGAATCAATGCTTATCTTTTTTAAGCGATGAATTTTGATTTTAAGGAAAATAGG
387 AGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGG
* *
3608588 GCAAAAAAAAGATTTCCATGCAAAAGAAAATTATCAATATCATTTATCCTAATAAGGAGAATGAG
452 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGAG
* * *
3608653 TTTATAGTTCTTAATCA-TAAATGAATGAAGATCATTACTAGAATCCATGTTTTTCTTATTAAAG
517 TTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAG
* * * * * *
3608717 GAATGAACTTTGACTTTACAAAAATCGGCGGGGAA-ATAGCCTTTCTTGCGAAATCC-AAGTGTC
582 GCACGAACTTAGACTTTACAAAAATTGG-TGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGTGTC
* * * * *
3608780 AATACCATGTATCGTTCTGAGAAGACTATGTTTATGGTGCCTAATCCTCAAAAGAATGGGGATTA
645 AATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * * *
3608845 GTATGAGTATTCATGTTTGTCTTCTTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAG
710 GTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-
* ** * **
3608910 AAAACCCCTTCTTGCGACACCAATGCATCAATGTCATGTATCCTAATGAAGACAATGTGTTCTTG
774 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTG
* * * *
3608975 GTTCCCAATCTTGAAAAGAATGGAGACTGTGATGAGAATCGATGTTTGTCTTATTTAAGGTATCA
839 GTTCCAAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATGA
* * *
3609040 ATTTTGATTTTAAGGAATATCGAG-AGAAGAAAAGATTTCCATGCTAAA
904 ATTTTGATTTTAAGGAAAATAGGGCA-AAGAAAAGATTTCCATGC-AAA
* * * *
3609088 AAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTTATAGTTCTTTATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * *
3609153 ATGAAGATCATTACTAGAATCCACGCTTGTCTTTTTTAAGGCACGAACTTAGACATTT-CAAAAA
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAC-TTTACAAAAA
* * * *
3609217 TTGGTGGGAAGAATGCCTTTCTTACGAAACCAAAGTGTCAATATTGTGTATCCTTTTGAGAAGAC
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
* * *
3609282 TATGTTTATGATACCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATATTTGTCTTATT
195 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * * * *
3609347 TGAGAGAAAAACTTTGATTCTATCAAAAATGGGGGAGA-AAAAGCTTTTCTTACGACACCAAAGC
260 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGC
*
3609411 ATCAATGTCATGTATCCTAATGAAGGGAATG-CGTTCTTGGTT-TGAAATCTTGAAAAGAATGGA
325 ATCAATGTCATGTATCCTAATGAAGGGAATGTC-TTCTTGGTTCT-CAATCTTGAAAAGAATGGA
* * ** * * * **
3609474 GACTATTACGAGAATCGATTTTTATCATATTTAAGGGATGAATTTTGATTTTAAGTAGGATAGGG
388 GACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGG
* * *
3609539 CAAAGAAAAGATTTCTATGCAAATGAAAATCATCAATATCATTTATCCTAATAAGGAAAATGAGT
453 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGAGT
* * *
3609604 TTATAGTGTC-TAATCACAAAATGAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTGAG
518 TTATAGT-TCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAG
* * * *
3609668 GCACGAACTTACACTTTACAAAAATTTGT-GAAAGAAAGCCTTCCTTGCGAAACCAAAGTGTCAA
582 GCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAA
* * * * ** * *
3609732 TATCATATATCCTTACGAGAAGAGTATGTTTATGGCACCTAATCTTGAAAAGAATGGGGATTAGT
647 TATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT
* *
3609797 ATGACTATTCATTTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAAAATGGTGGGAAAAA
712 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGT-GGAAAAA
* * * * * *
3609862 AACCTTTTCTT-CTGACACC-AAGCTTCAATGTCATCTATCTTAGTGAAGGGAATGTCTTCTTGG
776 AAGCTTTTCTTGC-GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGG
*** * * * * * * *
3609925 TTCTTGATCTTGTAAAGAGTGGAGACTGTTATGAGAATCAATGCTTATCTTTTTTAAGTGATGAA
840 TTCCAAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATGAA
*
3609990 TTTTGATTTTAAGGAAAATAGGGCAAAAAAAAGATTTCCATGCAAAA
905 TTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAA
* * * *
3610037 GAAAATTATCAATATCATTTATCCTAATAATGAGAATGAGTTTATAGTTCTTAATCAAAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * * *
3610102 ATGAAGATCATTACTAGAATCCATGTTTTTCTTATTTAAGGAATGAACTTTGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * * * * * * *
3610167 CGGTGGGGAGATAGCCTTTCTTGCAAAATCC-AAGTGTCAATACCATGTATCGTTCTGAGAAGAC
131 TGGTGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
* *
3610231 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTCTT
195 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * *
3610296 TAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCCTTTCTTGCAACACCAATGC
260 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGC
** * * * *
3610361 ATCAATGTCATGTATCCTAATGAAGACAATGTGTTCTTGGCTCCCAATCTTGAAAACAATGGAGA
325 ATCAATGTCATGTATCCTAATGAAGGGAATGTCTTCTTGGTTCTCAATCTTGAAAAGAATGGAGA
* * * * * * *
3610426 CTGTAATGAGAATCGATGTTTGTCTTATTTAAGGTATGAATTTTGATTTTAAGGAATATCGAGCG
390 CTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA
* * * * *
3610491 AAGAAAAGATTTCCATGCTAAATAAAATCATCAATATCATTTACCCTAATGAGGAGAATGTGTTT
455 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGAGTTT
* *** *
3610556 ATAGTTCTTTATCACAAAATGAATGAAGATCATTACTAGAATCCACACTTGTCTTTTTTAAGGCA
520 ATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGCA
* *
3610621 CGAACTTAGACATTT-CAAAAATTGGTGGGAAGAATGCCTTTCTTACGAAACCAAAGTGTCAATA
585 CGAACTTAGAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATA
* * * * *
3610685 TTGTGTATCCTTTTGAAAAGACTATGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAATAT
649 TCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT
* * * * *
3610750 GACTATTCATATTTGTCTTATTTGAGAGAAAAACTTTGATTCTATCAAAAATGGGGGAGAAAAAG
714 GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAG
* * * *
3610815 CTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGCTCC
779 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCC
* ** * *
3610880 CAATCTTGAAAAGAATGGAGACTGCAATGAGAATCGATGCTTGTCATT-TTTAGGGGATGAATTT
844 AAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGTTTGTC-TTATTTAAGGGATGAATTT
3610944 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTACC-TGCAAAA
908 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT-CCATGC-AAA
* * * * **
3610988 GAAAATTAGCAATATCATTTATCTTAATGAGGAGAATGAGTTTATAGTTTTTAATCGTAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * *
3611053 ATGAAGATAATTACTAGAATCCATGTTTGACTTATTTGAGGCACAAACGTAGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
* * ** * *
3611118 TGGTGGGAAGAAAGCCTTCCTAGCGAAACCAAAGCATCAATATAGTGTATCTTTATGAGAAGACT
131 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACT
* * *
3611183 ATGTTTATGGTGCCTTATCCTGAAAAGAATGGGGATTTGTATGACTATTCATGTTTGTCTTATTT
196 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
* * * * *
3611248 AATAGATAAACTTTGATTCGATCAGAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCA
261 AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCA
* * * *
3611313 TCAATGTCATGTATCCTAATGAAAGGAATG-CATTCTTGGCTCCCAATCTTGAAAAGAGTGGAGA
326 TCAATGTCATGTATCCTAATGAAGGGAATGTC-TTCTTGGTTCTCAATCTTGAAAAGAATGGAGA
* * * * *
3611377 CGGTTACGAGAATCGATGCTTGTGTTTTTTAAGGG-TCGAACTTTGATTTTAAGGAAAATTA-GG
390 CTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGAT-GAATTTTGATTTTAAGGAAAA-TAGGG
* ** * * *
3611440 CAAAGAAAAGATATCCATGGTAAAGAAAATCATCATTATCGTTTATCCTAATAAGGAGAATGAGG
453 CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGAGT
* * * *
3611505 TCATAGTTCTTAATCACAAAATGAATGAAGATCAGTACTAGAATCCATATTTGTCTTATTTGAGG
518 TTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGG
* ** * * * *
3611570 AACGAACTTAGACTTTACAAAAATCAGTGGGGAGAAAGCCTTTCTTGCAAAATCAAAGTGTCATT
583 CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAAT
* * * * *
3611635 ATCGTGT-TTCTTCTTGAGAAGACTACGTTTATGGTGCCTAATCCTGAAAAGAATGGGAATTAGT
648 ATCGTGTATCCTT-ATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGT
* * * * *
3611699 ATCACTATTTATGTTTGTTTTATTTAAGAGACAAACGTTGATTCTATC-AAAACGGTGGAAATAA
712 ATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAA-AA
* *
3611763 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-AATGGAAATGTGTTATTGG
776 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGGAATGTGTTCTTGG
* * * * *
3611827 TTCCAAATCATGAAAACAATGGAGACTGTTATGAGAATCGATGCTTGTCATATTTAAAGGATGAA
840 TTCCAAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATGAA
* * * *
3611892 TTTTGATTTTAAGAAAAATAGGGCCAAGAAAAGATTTTCATGTTAAA
905 TTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG-CAAA
* * *
3611939 GAAAATTATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAATTCTTAATCACAAAATGA
1 GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
* * * * * *
3612004 ATGAAGATCATTTCTAGAACCCTTGTTTGTTTTATTTGAGGCACAAACTCAGACTTTACAAAAAT
66 ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
* ** * * *
3612069 TGGTGAGAAGAAAGCCTTTCTTATGAAACCAAAGCAGTCAATATTGTGTATCCTTTTGAGAAGAC
131 TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAG-TGTCAATATCGTGTATCCTTATGAGAAGAC
* * * * *
3612134 TATGTTTATGGTGCCTTATCCTGAAAAGATTGGGGATTACTATGAC--TTCATGTTTGTCTGATT
195 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATT
* * * * * *
3612197 TAAGAGACAAAATTTGATTTTATCAAGAACGGTGGAAAAAAAAAGCTTTTCTTGCTACACCAAAG
260 TAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAAAACCTTTTCTTGCGACACCAAAG
* * * *
3612262 CATGAAGGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTC-CAATCTTGAAAAGAGTGGAG
324 CATCAATGTCATGTATCCTAATGAAGGGAATGTCTTCTTGGTTCTCAATCTTGAAAAGAATGGAG
* * * *
3612326 A-TGGTTATGAGAAT-GATGCTTGTCTTTTTTAAGGGTTGAACTTTGATTTCAAGGAAAATTA-G
389 ACT-GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAA-TAGG
* ** *
3612388 GCAAAGAAAAGATATCCATGGTAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAG
452 GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGAG
* * * * *
3612453 TTCATGGTTCTTAATCACAAAAATGAATGAAGATCATTAGTAGAATCAATGTTTGTCTTATTTGA
517 TTTATAGTTCTTAATCAC-AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAA
* * * ** * * * *
3612518 GGAATGAACTTACACTTTACAAAAAACGGTGGGGAGAAAACCTTTCTTGCGAAATCAAAATGTCA
581 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCA
* * * **
3612583 ATATCGTGTATCATTTTGAAAAGACTATGTTTATGGTGCCTAAT-CTAAAAAAGAATGATGATTA
646 ATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTA
* * * *
3612647 GTATAACTATTCATGTTTGTCTTATTAAAGAGACAAACGTTGATTCTATCAAAAATGATGGAAAA
710 GTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGG--AA
* * *
3612712 AAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTTTCCTAATGAGGGGAATGTGTTCTT
773 AAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTT
* * *
3612777 GGTTCCAAATCTTGAAAACAATGGAGGCTGTTA-GAAGAATCGATGTTTGTCATATTTAAGGGAT
838 GGTTCCAAATCTTGAAAAGAATGGAGACTGTTATG-AGAATCGATGTTTGTCTTATTTAAGGGAT
3612841 GAATTTTGATTTTAA-GAATAATAGGGCAAAGAAAAGATTTCCATGCAAAA
902 GAATTTTGATTTTAAGGAA-AATAGGGCAAAGAAAAGATTTCCATGC-AAA
* * * * *
3612891 GAAAATCATTAATAACATTTATCCTAATG-GGAAGAATGTGTTTATAGTTCTTAAACACAAATTG
1 GAAAATCATCAATATCATTTATCCTAATGAGG-AGAATGAGTTTATAGTTCTTAATCACAAAATG
* **
3612955 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCGTGAACTTAGACTTTACAAAAA
65 AATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAA
* * * * * * *
3613020 TTGGTGGGGAGAAAGCCTTTTTTGCGAAACCAACGCGTCAATATTGTGTATCCATAAGAGAAGAC
130 TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGAC
* * *
3613085 TATGTTTATGGTGCCTAATCCTAACAAAGAATGCGGATTAGTATGACTGTTAATGTTTGTCTTAT
195 TATGTTTATGGTGCCTAATCCTAA-AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTAT
* * * *
3613150 TTAAGAGACAAACTTTGATTCGATCAAAAATGGTAGAAAGAAAAGCTTTTCTTGCG-CACCAAAG
259 TTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAG
* * * *
3613214 CATCAATGTCATATATCCTATTGAAGGGAATGTGTTCTTGGTTC-CAAATCTTGAAAACAATGGA
324 CATCAATGTCATGTATCCTAATGAAGGGAATGTCTTCTTGGTTCTC-AATCTTGAAAAGAATGGA
* * *
3613278 GA-TCGTTATGAGAATCGATGCTTGTCATATTTAGGGGATGAATTTTGCTTTTAA-GAAAAGTAG
388 GACT-GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAA-TAG
* * * * * * * *
3613341 GACAAAGGAAAGATTTTCATGCAAAAAAAAATCATCAATATCGTTTATCCTAATGAGGATAATGT
451 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGA
* * *
3613406 GTTTATAGTTCTTAAACACAAATTGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAA
516 GTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAA
* * * *
3613471 GGCACGAACTTAGACTTTACAAAAATTGGTGGGGAGAAAGCCTTTCTTGCAAAACCAACGCGTCA
581 GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCA
* * * *
3613536 ATATCGTGTATCCTTATGAGAAGACTACGTTTATGGTGCCTAATTCTGAAAAGAATGAGGATTAG
646 ATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
3613601 TAT
711 TAT
3613604 TATCGCAACG
Statistics
Matches: 7170, Mismatches: 1034, Indels: 221
0.85 0.12 0.03
Matches are distributed among these distances:
947 3 0.00
948 210 0.03
949 1369 0.19
950 2039 0.28
951 2607 0.36
952 579 0.08
953 215 0.03
954 148 0.02
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (950 bp):
GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGAGTTTATAGTTCTTAATCACAAAATGA
ATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAAT
TGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATCGTGTATCCTTATGAGAAGACT
ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT
AAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCA
TCAATGTCATGTATCCTAATGAAGGGAATGTCTTCTTGGTTCTCAATCTTGAAAAGAATGGAGAC
TGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAA
AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGAGTTTA
TAGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGCAC
GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGTGTCAATATC
GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGA
CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAAAAAGCT
TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAA
ATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATGAATTTTGA
TTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
Found at i:3616090 original size:129 final size:131
Alignment explanation
Indices: 3615817--3616118 Score: 500
Period size: 129 Copynumber: 2.3 Consensus size: 131
3615807 CACTTGAATG
* *
3615817 AAACATATACGATGAAACTTGAGAAAGGAAACTACGATAACATCATGCATGAAACACATAAAAGT
1 AAACACATACGATGAAACTTGAGAAAGGGAACTACGATAACATCATGCATGAAACACATAAAAGT
* * **
3615882 CATAGCAATAACATCATGTATGAAACATTTTAACTACCTAAAATATTTTAGCATCAAAATGTTTA
66 CATAGCAATAACATCATGCATGAAACATTTTAACTACCTAAAAGATTCCAGCATCAAAATGTTTA
3615947 C
131 C
*
3615948 AAACACATACGATGAAACTTGAGAAAGGGAACTACGGTAACATCATGCATGAAACACATAAAAGT
1 AAACACATACGATGAAACTTGAGAAAGGGAACTACGATAACATCATGCATGAAACACATAAAAGT
* *
3616013 CA-AGCAATAA-ATCATGCATGAATCATTTTAACTACCTAAAAGATTCCAGCATTAAAATGTTTA
66 CATAGCAATAACATCATGCATGAAACATTTTAACTACCTAAAAGATTCCAGCATCAAAATGTTTA
3616076 C
131 C
3616077 AAACACATACGATGAAACTTGAGAAAAGGGAACTACGATAAC
1 AAACACATACGATGAAACTTGAG-AAAGGGAACTACGATAAC
3616119 TAAACAAAAC
Statistics
Matches: 160, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
129 71 0.44
130 25 0.16
131 64 0.40
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.23
Consensus pattern (131 bp):
AAACACATACGATGAAACTTGAGAAAGGGAACTACGATAACATCATGCATGAAACACATAAAAGT
CATAGCAATAACATCATGCATGAAACATTTTAACTACCTAAAAGATTCCAGCATCAAAATGTTTA
C
Found at i:3617546 original size:18 final size:18
Alignment explanation
Indices: 3617523--3617579 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 18
3617513 CGTCCCTGAC
3617523 TTTTTGATTTATTTTATT
1 TTTTTGATTTATTTTATT
3617541 TTTTTGAATTTGATTTT-TT
1 TTTTTG-ATTT-ATTTTATT
3617560 TTTACTTGA-TT-TTTTATT
1 TTT--TTGATTTATTTTATT
3617578 TT
1 TT
3617580 ATATATATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
17 4 0.12
18 10 0.29
19 11 0.32
20 6 0.18
21 3 0.09
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.75
Consensus pattern (18 bp):
TTTTTGATTTATTTTATT
Found at i:3618504 original size:32 final size:31
Alignment explanation
Indices: 3618462--3618560 Score: 135
Period size: 32 Copynumber: 3.1 Consensus size: 31
3618452 CATCGGACTT
* * *
3618462 AAAAGAGTTGCCACCGACTTGTGTGGGTTTTAG
1 AAAAG-GTTGCCACCAACTTGTGTAGGCTTT-G
3618495 AAAAGGTTGCCACCAACTTGTGTAGGCTTTG
1 AAAAGGTTGCCACCAACTTGTGTAGGCTTTG
*
3618526 AGAAGGGTTGCCACCAACTTGTGTAGGCTTTG
1 A-AAAGGTTGCCACCAACTTGTGTAGGCTTTG
3618558 AAA
1 AAA
3618561 GAAAAACGTC
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
31 4 0.07
32 52 0.85
33 5 0.08
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (31 bp):
AAAAGGTTGCCACCAACTTGTGTAGGCTTTG
Found at i:3618714 original size:61 final size:61
Alignment explanation
Indices: 3618534--3620953 Score: 2685
Period size: 61 Copynumber: 39.6 Consensus size: 61
3618524 TGAGAAGGGT
* * * * * *
3618534 TGCCACCAACTTGTGTAGGCTTTGAAA-GAAAA-ACGTCATGCTCTTTGGGGACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
** * * *
3618593 TGCCACCAACTCATGTGGGCTTTGAAAAGG-AAAGACATCCTGCTCATTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * * ** *
3618654 TGCTA-CAACTTATGTGGGCTTTAAGAAGGAAAAGGCGTCTTGCTCCTTAAACATTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAA-AAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* *
3618715 TGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAAGGCGTCCTACTCTTTAAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * * * *
3618777 TGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAGGTGTTCTACTCTTTGAAGACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * *
3618838 TGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAA--TGTCTTGCTCTTTGAGGATTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * * * * *
3618898 AGCCACCAACTTGTATGGGCTTTAAAAAAGAAAAGGCGTCATACTCTTTAAGGACAGAAATG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* *
3618960 TGCCACCAATTTGTGTGGGCTTTAAAAGGAAAAGGCAT-CTCGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT-GCTCTTTGAGGACTGAAAGG
*
3619021 TGCCACTAACTTGTGTGGGCTTTAAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* *
3619083 TGCCACCAACTTGTGTGGGCTTTAAAGGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * * * *
3619144 TGCCAGCAACTTGTGTGGACTTTAAAAGG-AGAGGTGTCTTGCTCTTTAAGGATTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* *
3619204 TGCCAGCAACTTGTGTGGGCTTT-AAAGAGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAG-GAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * *
3619265 TGCCAGCAACTTGTGTGGGCTTTAAAAGG-AGAGGTGTCTTGCTCTTTGAGGATTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * *
3619325 TGCCAGCAACTTGTGTGGGCTTTAAAACGAAAAGGTGCCCTGCTCTTTGAGGACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* ** * * *
3619386 TGCCACCAACTTGTGTAGGCTTTCCAAGGAGAAGGCATCCTGCTCTTTGAGGATTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * *
3619447 TACCACCAACTTGTGTGGGCTTTGAAAAGG-AAAGGCGTCCTGCT-TTCTGATGAGTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTT-TGAGGACTGAAAGG
* * *
3619508 TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTGTCTTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* *
3619569 TGCCAGCAACTTGTGTGGGCTTTAAAA-AAAGAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAA-AAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * *
3619630 TGCCACCAACTTGTGTGGGGTTTAAAAGAAAAAGGCGTCCTGTTCTTTGAGGACT-AGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGA-AAGG
* * * * * *
3619691 TGTCAGCAATTTGTTTGGGCTTTAAAAGGTAAAGGCGTACTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * * * *
3619752 TGCCAGCAACTTGTGTGGGCTTTTAAAA-GAGAAGACATCCTGCTCTTTGAGAACTGGATGG
1 TGCCACCAACTTGTGTGGGC-TTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * *
3619813 TGCCACCAACTTGTATGAGTTTTAAAAAGGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* *
3619875 TGCCACCAACTTGTATGGGCTTTAAAA-AAAGAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAA-AAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * *
3619936 TGCCACTAACTTGTGTGGAG-TTTAAAAGAAAAAGGCGTCCTCCTCTTTGAGGACT-AGAAGG
1 TGCCACCAACTTGTGTGG-GCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGA-AAGG
* * * * * *
3619997 TGTCAGCAATTTATGTGGGCTTTAAAAGGTAAAGGCGTACTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * * * * * *
3620058 TGCTAGCAACTTGTGTGGGCTTTAAAA-AAAGAAGACATCATGCTCTTTGAGAACTGGATGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAA-AAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * * *
3620119 TGCCACCAACTTCTGTGAGTTTTAAAAAGGAAAAGGCGTCTTTCTCTTTGAGGACTGAAATG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * *
3620181 TGCCACCAACTTGTATGAGCTTTAAAA-AAAGAAGGCATCCTACTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAA-AAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* *
3620242 TGCCACCAACTTGTGTGGGGTTTAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT-AGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGA-AAGG
* * * * * *
3620303 TGTCAGCAATTTGTGTGTGCTTTAAAAGGTAAAGGCGTACTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
** * * * * * * *
3620364 TG-CTGCAACTTGTGTGGGCTTTAAAAAGAGAAGACATCCTGCTCTTTGAGAACTGGATGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * *
3620424 TGCCACCAACTTGTGTGAGTTTTAAAAAGGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* ** * * *
3620486 TGCCACCAACTTGTGTCGGCTTTAAAAAGGAAATTGTGTCATGCTCTTTGAGGACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * * *
3620548 TGCCACCAACTTGTG-GGGCTTTAAAAAGAAAAATGCGTCATGCACTTTGAGGACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * *
3620609 TGCCACCAACTTGTGTGGGCTTTGAAAAGGAAAA-GCGTCTTACTCTTTAAGGATTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* ** * * * * *
3620670 GGTAATCAACTTATGTGGGCTTTAAAAGAAAAAGGCGTCTTGCTCTTTGAGGACTAAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * *
3620731 GGCCATCAACTTGTGTGGGCTTTAAAA-GAAGAAGGTGTCTCTTGCTCTTTGAGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGAA-AAGGCGTC-C-TGCTCTTTGAGGACTGAAAGG
* * *
3620794 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAAGGCATCCTGCTCTTTGAGGACTGAAATG
1 TGCCACCAACTTGTGTGGGCTTTAAAAG-GAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* ** * * *
3620856 TGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAATACATCCTCCTCTTTGAGGACTGAAAGT
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
* * * *
3620918 TGCCACCAACTTATATGAGCTTTAAAAAGATAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAAGG
3620954 TTTAGAGGAT
Statistics
Matches: 2006, Mismatches: 303, Indels: 101
0.83 0.13 0.04
Matches are distributed among these distances:
59 26 0.01
60 260 0.13
61 1150 0.57
62 505 0.25
63 57 0.03
64 6 0.00
65 2 0.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (61 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
Found at i:3619034 original size:306 final size:301
Alignment explanation
Indices: 3618534--3620944 Score: 2717
Period size: 306 Copynumber: 7.9 Consensus size: 301
3618524 TGAGAAGGGT
* * * * * * *
3618534 TGCCACCAACTTGTGTAGGCTTTGAAAGAAAAACGTCATGCTCTTTGGGGACTAAAAGGTGCCAC
1 TGCCAGCAACTTGTGTGGGCTTTAAAAGGAAAACGTCCTGCTCTTTGAGGACTGAAAGGTGCCAC
** * * * * * *
3618599 CAACTCATGTGGGCTTTGAAAAGGAAAGACATCCTGCTCATTGAGGACTGAAAGGTGCTA-CAAC
66 CAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACCAAC
* * * * * ** *
3618663 TTATGTGGGCTTTAAGAAGGAAAAGGCGTCTTGCTCCTTAAACATTGAAAGGTGCCACCAACTTG
131 TTGTGTGGGCTTTAA-AAGAAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTG
* * *
3618728 TGTGGGCTTTAAAAAGGAAAAGGCGTCCTACTCTTTAAGGACTGAAAGGTGCCACCAACTTGTGT
195 TGTGGGCTTT-AAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGT
* * * * * *
3618793 AGGCTTTAAAAGGAGAAGGTGTTCTACTCTTTGAAGACTAAAAGG
258 GGGCTTTAAAAGGA-AAGGCGTACTGCTCTTTGAGGACTGAAAGG
* * * * *
3618838 TGCCACCAACTTGTGTGGGCTTTAAAAAGGAAAATGTCTTGCTCTTTGAGGATTGAAAGGAGCCA
1 TGCCAGCAACTTGTGTGGGCTTT-AAAAGGAAAACGTCCTGCTCTTTGAGGACTGAAAGGTGCCA
* * * * * * *
3618903 CCAACTTGTATGGGCTTTAAAAAAGAAAAGGCGTCATACTCTTTAAGGACAGAAATGTGCCACCA
65 CCAACTTGTGTGGGCTTT-AAAAAGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACCA
* * * *
3618968 ATTTGTGTGGGCTTTAAAAGGAAAAGGCAT-CTCGCTCTTTGAGGACTGAAAGGTGCCACTAACT
129 ACTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCT-GCTCTTTGAGGACTGAAAGGTGCCACCAACT
*
3619032 TGTGTGGGCTTTAAAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
193 TGTGTGGGCTTT-AAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGT
* * *
3619097 GTGGGCTTTAAAGGGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGG
256 GTGGGCTTTAAAAGG-AAAGGCGTACTGCTCTTTGAGGACTGAAAGG
* *** * * *
3619144 TGCCAGCAACTTGTGTGGACTTTAAAAGGAGAGGTGTCTTGCTCTTTAAGGATTGAAAGGTGCCA
1 TGCCAGCAACTTGTGTGGGCTTTAAAAGGA-AAACGTCCTGCTCTTTGAGGACTGAAAGGTGCCA
* * * *
3619209 GCAACTTGTGTGGGCTTTAAAGAGAAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCAGCAA
65 CCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACCAA
* * * * * *
3619274 CTTGTGTGGGCTTTAAAAG-GAGAGGTGTCTTGCTCTTTGAGGATTGAAAGGTGCCAGCAACTTG
130 CTTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTG
* *
3619338 TGTGGGCTTTAAAACG-AAAAGGTGCCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGT
195 TGTGGGCTTTAAAA-GAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGT
* ** * * *
3619402 AGGCTTTCCAAGGAGAAGGCATCCTGCTCTTTGAGGATTGAAAGG
258 GGGCTTTAAAAGGA-AAGGCGTACTGCTCTTTGAGGACTGAAAGG
* * * * *
3619447 TACCACCAACTTGTGTGGGCTTTGAAAAGGAAAGGCGTCCTGCT-TTCTGATGAGTGAAAGGTGC
1 TGCCAGCAACTTGTGTGGGCTTT-AAAAGGAAA-ACGTCCTGCTCTT-TGAGGACTGAAAGGTGC
* * ** *
3619511 CACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTGTCTTGCTCTTTGAGGACTGAAAGGTGCCAGC
63 CACCAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACC
3619576 AACTTGTGTGGGCTTTAAAA-AAAGAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC
128 AACTTGTGTGGGCTTTAAAAGAAA-AAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC
* * * * *
3619640 TTGTGTGGGGTTTAAAAGAAAAAGGCGTCCTGTTCTTTGAGGACTAGAAGGTGTCAGCAATTTGT
192 TTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGT
*
3619705 TTGGGCTTTAAAAGGTAAAGGCGTACTGCTCTTTGAGGACTGAAAGG
256 GTGGGCTTTAAAAGG-AAAGGCGTACTGCTCTTTGAGGACTGAAAGG
* * * * *
3619752 TGCCAGCAACTTGTGTGGGCTTTTAAAAGAGAAGACATCCTGCTCTTTGAGAACTGGATGGTGCC
1 TGCCAGCAACTTGTGTGGGC-TTTAAAAG-GAAAACGTCCTGCTCTTTGAGGACTGAAAGGTGCC
* * *
3619817 ACCAACTTGTATGAGTTTTAAAAAGGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACC
64 ACCAACTTGTGTGGGCTTTAAAAA-GAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACC
* *
3619882 AACTTGTATGGGCTTTAAAA-AAAGAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACTAAC
128 AACTTGTGTGGGCTTTAAAAGAAA-AAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC
* * * * *
3619946 TTGTGTGGAG-TTTAAAAGAAAAAGGCGTCCTCCTCTTTGAGGACTAGAAGGTGTCAGCAATTTA
192 TTGTGTGG-GCTTTAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTG
3620010 TGTGGGCTTTAAAAGGTAAAGGCGTACTGCTCTTTGAGGACTGAAAGG
255 TGTGGGCTTTAAAAGG-AAAGGCGTACTGCTCTTTGAGGACTGAAAGG
* * * * * * * *
3620058 TGCTAGCAACTTGTGTGGGCTTTAAAAAAAGAAGACATCATGCTCTTTGAGAACTGGATGGTGCC
1 TGCCAGCAACTTGTGTGGGCTTT--AAAAGGAAAACGTCCTGCTCTTTGAGGACTGAAAGGTGCC
* * * * * *
3620123 ACCAACTTCTGTGAGTTTTAAAAAGGAAAAGGCGTCTTTCTCTTTGAGGACTGAAATGTGCCACC
64 ACCAACTTGTGTGGGCTTTAAAAA-GAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACC
* * * *
3620188 AACTTGTATGAGCTTTAAAA-AAAGAAGGCATCCTACTCTTTGAGGACTGAAAGGTGCCACCAAC
128 AACTTGTGTGGGCTTTAAAAGAAA-AAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC
* * * *
3620252 TTGTGTGGGGTTTAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGTCAGCAATTTGT
192 TTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTA-AAGGTGCCACCAACTTGT
*
3620317 GTGTGCTTTAAAAGGTAAAGGCGTACTGCTCTTTGAGGACTGAAAGG
256 GTGGGCTTTAAAAGG-AAAGGCGTACTGCTCTTTGAGGACTGAAAGG
* * * * * *
3620364 TG-CTGCAACTTGTGTGGGCTTTAAAAAGAGAAGACATCCTGCTCTTTGAGAACTGGATGGTGCC
1 TGCCAGCAACTTGTGTGGGCTTT-AAAAG-GAAAACGTCCTGCTCTTTGAGGACTGAAAGGTGCC
* *
3620428 ACCAACTTGTGTGAGTTTTAAAAAGGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACC
64 ACCAACTTGTGTGGGCTTTAAAAA-GAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACC
* * ** * * *
3620493 AACTTGTGTCGGCTTTAAAAAGGAAATTGTGTCATGCTCTTTGAGGACTAAAAGGTGCCACCAAC
128 AACTTGTGTGGGCTTT-AAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAAC
* * *
3620558 TTGTG-GGGCTTTAAAAAGAAAAATGCGTCATGCACTTTGAGGACTAAAAGGTGCCACCAACTTG
192 TTGTGTGGGCTTT-AAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTG
* * * *
3620622 TGTGGGCTTTGAAAAGGAAAAGCGT-CTTACTCTTTAAGGATTGAAAGG
255 TGTGGGCTTT-AAAAGGAAAGGCGTAC-TGCTCTTTGAGGACTGAAAGG
* ** * * * * * *
3620670 GGTAATCAACTTATGTGGGCTTTAAAAGAAAAAGGCGTCTTGCTCTTTGAGGACTAAAAGGGGCC
1 TGCCAGCAACTTGTGTGGGCTTTAAAAGGAAAA--CGTCCTGCTCTTTGAGGACTGAAAGGTGCC
*
3620735 ATCAACTTGTGTGGGCTTT-AAAAGAAGAAGGTGTC-TCTTGCTCTTTGAGGACTGAAAGGTGCC
64 ACCAACTTGTGTGGGCTTTAAAAAGAA-AA-G-G-CATCTTGCTCTTTGAGGACTGAAAGGTGCC
* *
3620798 ACCAACTTGTGTGGGCTTTAAAAGAAAAAAGGCATCCTGCTCTTTGAGGACTGAAATGTGCCACC
125 ACCAACTTGTGTGGGCTTTAAAAG-AAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACC
** * * *
3620863 AACTTGTGTGGGCTTTAAAAAGAAAAATACATCCTCCTCTTTGAGGACTGAAAGTTGCCACCAAC
189 AACTTGTGTGGGCTTT-AAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT-AAAGGTGCCACCAAC
* * *
3620928 TTATATGAGCTTTAAAA
252 TTGTGTGGGCTTTAAAA
3620945 AGATAAAGGT
Statistics
Matches: 1848, Mismatches: 218, Indels: 78
0.86 0.10 0.04
Matches are distributed among these distances:
302 1 0.00
303 110 0.06
304 183 0.10
305 448 0.24
306 862 0.47
307 93 0.05
308 91 0.05
309 60 0.03
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (301 bp):
TGCCAGCAACTTGTGTGGGCTTTAAAAGGAAAACGTCCTGCTCTTTGAGGACTGAAAGGTGCCAC
CAACTTGTGTGGGCTTTAAAAAGAAAAGGCATCTTGCTCTTTGAGGACTGAAAGGTGCCACCAAC
TTGTGTGGGCTTTAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGT
GTGGGCTTTAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGG
CTTTAAAAGGAAAGGCGTACTGCTCTTTGAGGACTGAAAGG
Found at i:3621867 original size:11 final size:11
Alignment explanation
Indices: 3621853--3621883 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
3621843 TTTTCTTTTT
*
3621853 TTTTTTTTTGC
1 TTTTTTTATGC
3621864 TTTTTTTATGC
1 TTTTTTTATGC
3621875 TTTTTTTAT
1 TTTTTTTAT
3621884 AAAAGAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.06, C:0.06, G:0.06, T:0.81
Consensus pattern (11 bp):
TTTTTTTATGC
Found at i:3622170 original size:22 final size:22
Alignment explanation
Indices: 3622124--3622180 Score: 66
Period size: 21 Copynumber: 2.7 Consensus size: 22
3622114 TTTGTACTCT
*
3622124 CTTTTTTTG-TTTTTCTTTTCA
1 CTTTTTGTGCTTTTTCTTTTCA
*
3622145 -TTTTTGTGCTTTTTCTTTTGA
1 CTTTTTGTGCTTTTTCTTTTCA
3622166 CTTTTTCGT-CTTTTT
1 CTTTTT-GTGCTTTTT
3622181 GAAGAGAACT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 7 0.23
21 11 0.35
22 11 0.35
23 2 0.06
ACGTcount: A:0.04, C:0.14, G:0.09, T:0.74
Consensus pattern (22 bp):
CTTTTTGTGCTTTTTCTTTTCA
Found at i:3626784 original size:131 final size:131
Alignment explanation
Indices: 3626548--3626850 Score: 507
Period size: 131 Copynumber: 2.3 Consensus size: 131
3626538 CACTAGAATG
* *
3626548 AAACATATACAATGAAACTTGAGAAAGGGAACTACGGTAACATCATGCATGAAACACATAAAAGT
1 AAACACATACGATGAAACTTGAGAAAGGGAACTACGGTAACATCATGCATGAAACACATAAAAGT
* * * *
3626613 CATAGCAATAACATCAGGTATGAAACATTTTAACTACCTAAAATATTCTAGCATCAAACTGTTTA
66 CATAGCAATAACATCAGGTATGAAACATTTTAACTACCTAAAAGATTCCAACATCAAAATGTTTA
3626678 C
131 C
*
3626679 AAACACATACGATGAAACTTGAGAAAGGGAACTACAGTAACATCATGCATGAAACACATAAAAGT
1 AAACACATACGATGAAACTTGAGAAAGGGAACTACGGTAACATCATGCATGAAACACATAAAAGT
* * * *
3626744 CATAGTAATAACATCATGTATGAAACATTTTAACTGCCTAAAAGATTCCAACATTAAAATGTTTA
66 CATAGCAATAACATCAGGTATGAAACATTTTAACTACCTAAAAGATTCCAACATCAAAATGTTTA
3626809 C
131 C
3626810 AAACACATACGATGAAACTTGAGAAAGGGAACTACGGTAAC
1 AAACACATACGATGAAACTTGAGAAAGGGAACTACGGTAAC
3626851 TAAACAAAAC
Statistics
Matches: 160, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 160 1.00
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.23
Consensus pattern (131 bp):
AAACACATACGATGAAACTTGAGAAAGGGAACTACGGTAACATCATGCATGAAACACATAAAAGT
CATAGCAATAACATCAGGTATGAAACATTTTAACTACCTAAAAGATTCCAACATCAAAATGTTTA
C
Found at i:3629367 original size:472 final size:473
Alignment explanation
Indices: 3628468--3629644 Score: 1691
Period size: 472 Copynumber: 2.5 Consensus size: 473
3628458 GGTGTCTACA
* *
3628468 AGTATGATTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-AGTGGAA
1 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGA-TGGAA
* * *
3628532 CGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGTGTTCT
65 AGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTC---TATCCTAATGAAGGGAATGTGTTCT
** * * * * * **
3628597 TGGTTCCAAATCTGGAAAATAATGGAGACTGTTACGAGAATAGGTGGGTGTCATATTTAAGGGAT
127 TGGTTCCAAATCTTTAAAAAAAGGGAGACTGTTATGAGAATCGATGCCTGTCATATTTAAGGGAT
*
3628662 GAATTTTGATTTTAAGGAAAATAGGGCAAA-AAAAGATTTTCATGCAAAAGAAAATCATCAATAT
192 GAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
* * *
3628726 CATTTATCCTAATAAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAAAGAAGATCATTGCT
257 CATTTATCCAAATAAGGAGAATGTGCTTATAGTTCTTAATCACAAAATGAAAGAAGATCATTACT
* * * *
3628791 AGAATCCTCGTTTGTCTTGTTTGAGGCACGAACTTAGTCTTTACAAAAATTGGGGGGAAGAAAGC
322 AGAATCCTCGTTTGTCTTGTTTGAGGCACAAACTTAGACATTACAAAAATTGGGGGGAAGAAAGA
* * * *
3628856 CTTTCTTGCAAAACCAAAACATTAATATCGTGCATCCTTTTGAGAAGACTATGTTTGTGGTGCCT
387 CTTTCTTGCAAAACCAAAACATTAATAACCTGCATCCTTTTGAGAAGACTATGTTTATGATGCCT
*
3628921 AATCCTGAAAAGAATGGGGATT
452 AATCCTGAAAAGAATAGGGATT
*
3628943 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACCTTGATTCTATCAAAAACGATGGAAA
1 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAA
*
3629008 GAAAAGCTTTTCTTACAACACCAAAGCATCAATGTC-ATCCTAATGAAGGGAATGTGTTCTTGGT
66 GAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCTATCCTAATGAAGGGAATGTGTTCTTGGT
*
3629072 TCCAAATCTTTAAAAAAAGGGAGACTGTTATGAGAATCGATGCCTGTCATATTTAAGGGATGCAT
131 TCCAAATCTTTAAAAAAAGGGAGACTGTTATGAGAATCGATGCCTGTCATATTTAAGGGATGAAT
3629137 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
* * * *
3629202 TATCCAAATGAGGAGAATGTGCTTATAGTTCTTAATCACAAGATGAATGAAGATCGTTACTAGAA
261 TATCCAAATAAGGAGAATGTGCTTATAGTTCTTAATCACAAAATGAAAGAAGATCATTACTAGAA
* * *
3629267 TCCAT-GTTTGTCTTGTTTGAGGCATAAACTTAGACATTACAAAAATTGGTGGTAAGAAAGACTT
326 TCC-TCGTTTGTCTTGTTTGAGGCACAAACTTAGACATTACAAAAATTGGGGGGAAGAAAGACTT
* ** * * *
3629331 TCTTGCGAAACCAACTCGTTAATAACCTGTATCCTTTTGAGAAGACTATGTTTATGATGTCTAAT
390 TCTTGCAAAACCAAAACATTAATAACCTGCATCCTTTTGAGAAGACTATGTTTATGATGCCTAAT
*
3629396 CTTGAAAAGAATAGGGATT
455 CCTGAAAAGAATAGGGATT
* ** * * * *
3629415 AGTATGACGATAAATGTTTGTCTTATTTAGGAGACAAACTTTGATTTTATCAAAAACGGTGAAAA
1 AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAA
*
3629480 G-AAAGCCTTTTCTTCCGACACCAAAGCATCAATGTCATCTATCCTAATGAAGGGAATGTGTTCT
66 GAAAAG-CTTTTCTTACGACACCAAAGCATCAATG---TCTATCCTAATGAAGGGAATGTGTTCT
* * * * *
3629544 TGGTTCCAAATCTTT-AAAAGAGTGGAGACTATTATGAGAATCGATGCTTGTCTTTTTTAAGGGA
127 TGGTTCCAAATCTTTAAAAAAAG-GGAGACTGTTATGAGAATCGATGCCTGTCATATTTAAGGGA
* *
3629608 TGAACTTCGATTTTAAGGAAAATAGGGCAAAGAAAAG
191 TGAATTTTGATTTTAAGGAAAATAGGGCAAAGAAAAG
3629645 TGAAAGCTCA
Statistics
Matches: 631, Mismatches: 62, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
471 112 0.18
472 306 0.48
473 1 0.00
475 101 0.16
476 111 0.18
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
AGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAA
GAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCTATCCTAATGAAGGGAATGTGTTCTTGGT
TCCAAATCTTTAAAAAAAGGGAGACTGTTATGAGAATCGATGCCTGTCATATTTAAGGGATGAAT
TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
TATCCAAATAAGGAGAATGTGCTTATAGTTCTTAATCACAAAATGAAAGAAGATCATTACTAGAA
TCCTCGTTTGTCTTGTTTGAGGCACAAACTTAGACATTACAAAAATTGGGGGGAAGAAAGACTTT
CTTGCAAAACCAAAACATTAATAACCTGCATCCTTTTGAGAAGACTATGTTTATGATGCCTAATC
CTGAAAAGAATAGGGATT
Found at i:3630428 original size:13 final size:13
Alignment explanation
Indices: 3630410--3630435 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3630400 CATTTTGGGA
3630410 TGTATCGATACAT
1 TGTATCGATACAT
3630423 TGTATCGATACAT
1 TGTATCGATACAT
3630436 CTTGCGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3630432 original size:33 final size:32
Alignment explanation
Indices: 3630390--3630453 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
3630380 TACAAGCCAA
* *
3630390 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGCG-TGTATCGATACAT
3630423 TGTATCGATACATCTTGCGTGTATCGATACA
1 TGTATCGATACATCTTGCGTGTATCGATACA
3630454 AATAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATCTTGCGTGTATCGATACAT
Found at i:3633041 original size:13 final size:13
Alignment explanation
Indices: 3633023--3633047 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3633013 ATAAACCCTT
3633023 TGTATCGATACAA
1 TGTATCGATACAA
3633036 TGTATCGATACA
1 TGTATCGATACA
3633048 GAGAATGCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3633107 original size:20 final size:21
Alignment explanation
Indices: 3633082--3633121 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
3633072 AGTTTTCCAG
3633082 ATGTATCGATACATT-TGAAC
1 ATGTATCGATACATTCTGAAC
3633102 ATGTATCGATACATTCTGAA
1 ATGTATCGATACATTCTGAA
3633122 ATTTTTCCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (21 bp):
ATGTATCGATACATTCTGAAC
Found at i:3633263 original size:8 final size:8
Alignment explanation
Indices: 3633250--3633275 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
3633240 AACATCATTC
3633250 ATCACAAA
1 ATCACAAA
3633258 ATCACAAA
1 ATCACAAA
3633266 ATCACAAA
1 ATCACAAA
3633274 AT
1 AT
3633276 TTAATCAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (8 bp):
ATCACAAA
Found at i:3638457 original size:13 final size:13
Alignment explanation
Indices: 3638439--3638464 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3638429 CATTTTGGGA
3638439 TGTATCGATACAT
1 TGTATCGATACAT
3638452 TGTATCGATACAT
1 TGTATCGATACAT
3638465 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3638461 original size:33 final size:32
Alignment explanation
Indices: 3638419--3638482 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
3638409 TACAAGCCAA
*
3638419 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
*
3638452 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
3638483 AACAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:3639479 original size:159 final size:159
Alignment explanation
Indices: 3639311--3641372 Score: 410
Period size: 159 Copynumber: 13.1 Consensus size: 159
3639301 GTGGAGACTG
* * * *
3639311 TTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAATTTTTGATTTTAAAAAAATAGG-GCCAA
1 TTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATTTTAAAAAAATAGGAGCAAA
* * * *
3639375 GAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
65 GAAAAGCTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTAT
*
3639440 AGTTCTTAATCACAAAATGAATGAAGATCA
130 AGCTCTTAATCACAAAATGAATGAAGATCA
* * * * * * * * * * *
3639470 TTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG-AGAA
1 TTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAATAGGAGCA-AA
* * * ** * * * ** ** * *
3639534 -AAAAGCCTTTCTTACAAAATCAAAGCGTTAATATCGTGTATCCTTTTGAAAAGACTATGTTTAT
65 GAAAAGCTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTAT
* * * * ** *
3639598 GGCACCTAATC-CTAAAAAGAATGGGGATTAGAA
130 AGCTCTTAATCAC-AAAATGAATGAAGA-T--CA
* * * * ** *
3639631 TGACT--ATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATAGGAG-AAA
1 TTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAAAATAGGAGCAAA
* * * ** *
3639692 AAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTCT
65 GAAAAGCTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGTT-T
* * * * *
3639756 -TTGCTCTTAATGATGAAAA-GAACGGAGA-CA
128 ATAGCTCTTAATCA-CAAAATGAATGAAGATCA
* * * * * * *
3639786 --ACGATGAGAATTGATGCTTGT-TATATTTAGGGGGTGAATTTTAATTTTAAGGAAAATAAG-G
1 TTAC--T-AGAATCGATGCTTGTCT-TATTTAAGGGATGAACTTTGATTTTAA-AAAAATAGGAG
* * * *
3639847 CAAAGAAAAG-TTTTCCATGCAAAAAAAAATCATCAATATCATTTATCATAAAGAGGAGAATGTG
61 CAAAGAAAAGCTTTT-CATGCAAAAAAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTG
* *
3639911 TTTATAGTTCTTAATCACAAAATAAATGAAGATCA
125 TTTATAGCTCTTAATCACAAAATGAATGAAGATCA
* * * * * * * * * * * * *
3639946 TTACTAGAATCCATGTTTATC-CAGTTTGAGGCACGAACTTAGACTTTACAAATATTGGTG-AGA
1 TTACTAGAATCGATGCTTGTCTTA-TTTAAGGGATGAACTTTGATTTTAAAAAAATAGGAGCA-A
* * ** ** * * * * * *
3640009 AG-AAAGCCTTTCTTGGGAAACCAAAGCGTTAATATCATGTATCCTTATGAGAAGACTTTGTTTA
64 AGAAAAGCTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTA
* * * ** * *
3640073 -CGGTGCCTAAT------GGGGAT-TAG-T-A
129 TAGCT-CTTAATCACAAAATGAATGAAGATCA
* * * * * ** * * * * *
3640095 TGACT--ATTC-ATGTTTGTTTTATTTTA-CAATCAATCTTTTATTCTGT-CAAAAAT-GGTGGA
1 TTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAA-CTTTGATT-T-TAAAAAAATAGGAGCA
* * * ** *
3640154 AAGAAAAGCCTTTCCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGT
63 AAGAAAAG-CTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTGT
* * ** ** *
3640218 TCT-TGGTTCCAAATCTTGAAAA-GAA-CAGAGA-C-
126 T-TATAGCTCTTAATC-ACAAAATGAATGA-AGATCA
* * * * * * **
3640250 TGTCACGAGAGTCGATCCTAGTCATATTTAAGGGATGAATTTTGATTTTATGGAAAATAGG-GCA
1 T-T-ACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAAAATAGGAGCA
* * * * * * *
3640314 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGCTT
63 AAGAAAAGCTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTT
*
3640379 ATAGTTCTTAATCACAAAATGAATGAAGATCA
128 ATAGCTCTTAATCACAAAATGAATGAAGATCA
* * * * * * * * * * * * * * * **
3640411 TTGCTAGAATCCATGATTATCTTGTTTGAGGCACGGACATAGACTTTACAAAAATTGGTGGGAAG
1 TTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAATAGGAGCAAAG
* ** * * ** * * *
3640476 -AAAGTCTTTTCTTGCGAAACCAAATG--TCAATATCGTGTATCCTTTTGAGAAGACTATGTTTA
66 AAAAG-CTTTTCATGC-AAAAAAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTA
* *** *
3640538 T-GGTACTTAATTGTGAAAA-GAAT-AGGA--A
129 TAGCT-CTTAA-TCACAAAATGAATGAAGATCA
* * ** * * *
3640566 TTAGTATGACTATTC-ATGTTTGTCTTATTT-AGGAGACAAACTTTGATTCTATAAAAAA-CGGG
1 TTACTA-GA--A-TCGATGCTTGTCTTATTTAAGG-GATGAACTTTGATTTTA-AAAAAATAGGA
* * * * * ** * * *
3640628 GTAAA-AACATGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTTAATAAAGG-GAATG
60 GCAAAGAA-AAGCTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAAT-GAGGAGAATG
* ** *
3640691 TG-TTATTGGCTCTTAATCTTGAAAA-GAATGGAGA-CTA
123 TGTTTA-TAGCTCTTAATC-ACAAAATGAATGAAGATC-A
* * * * *
3640728 TGACGAGAATTGATGCTTGT-TGTATTT-AGGGAATGAATTTTGATTTTAAGGAAAATAGG-GCA
1 TTACTAGAATCGATGCTTGTCT-TATTTAAGGG-ATGAACTTTGATTTTAA-AAAAATAGGAGCA
* * * * * * * * * * **
3640790 AAAAAAAGATTTCCATGCAAAAGAAAATCATAAATATCATTTATCCAAAAGAGGATAATGTACTT
63 AAGAAAAGCTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTT
* *
3640855 AGAGTTCTTAATCACAAAATGAATGAAGATCA
128 ATAGCTCTTAATCACAAAATGAATGAAGATCA
* ** * * * * * * * * * * **
3640887 TTACTAGAATCCATATTTATCTTGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG
1 TTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAATAGGAGCAAAG
* ** ** * * * * *
3640952 -AAAGCTTTTCTTGTGAAACCAAAGCATTAATATCATGTATCCTTATGAGAAGACTATGTTTAT-
66 AAAAGCTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATA
* * * ** *
3641015 GGTGCCTAATC-CTAAAAAGAATGGGGATTA
131 GCT-CTTAATCAC-AAAATGAATGAAGATCA
* * * ** * * * * *
3641045 GTATGACT--ATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATAAAAAA-CGGTGG
1 -T-T-ACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAAAATAGGAGC
* * * ** * * *
3641106 AAAGAAAAGGC-TTTCTTGCGACACCAGAGCATCAATGTCATGTATCCTAAAGAAGG-GAATGTG
62 AAAGAAAA-GCTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTG
* * ** * *
3641169 TTCT-TGGTTCCAAATCATGAAAA-GAAT-AGAGA-CTG
125 TT-TATAGCTCTTAATCA-CAAAATGAATGA-AGATC-A
* * * *
3641204 TTACAAGAATCGATGCCTT-TCATT-TTTAAGAGATGAATTTTGATTTTAAGGAAAATAGG-GCA
1 TTACTAGAATCGATG-CTTGTC-TTATTTAAGGGATGAACTTTGATTTTAA-AAAAATAGGAGCA
* * * * * * * * *
3641266 AAGAAAAGATTTCCATACAAAAGAAAATCATCATTATCATTTATCCTAATGAGTAGATTGTGTTT
63 AAGAAAAGCTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTT
* * * *
3641331 ATAGTTCTTAGTCACAATATGAATGAAGATAA
128 ATAGCTCTTAATCACAAAATGAATGAAGATCA
3641363 TTACTAGAAT
1 TTACTAGAAT
3641373 GCATGATTAT
Statistics
Matches: 1332, Mismatches: 438, Indels: 266
0.65 0.22 0.13
Matches are distributed among these distances:
145 3 0.00
146 23 0.02
147 16 0.01
148 47 0.04
149 10 0.01
150 1 0.00
151 2 0.00
152 2 0.00
153 2 0.00
154 2 0.00
155 10 0.01
156 4 0.00
157 22 0.02
158 409 0.31
159 669 0.50
160 87 0.07
161 17 0.01
162 6 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (159 bp):
TTACTAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAATAGGAGCAAAG
AAAAGCTTTTCATGCAAAAAAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATA
GCTCTTAATCACAAAATGAATGAAGATCA
Found at i:3639804 original size:476 final size:476
Alignment explanation
Indices: 3638900--3647637 Score: 9716
Period size: 476 Copynumber: 18.4 Consensus size: 476
3638890 GATCCTAACA
* * *
3638900 AAAAGATTTCCATGCAAAAGAAAATCATCAAAATCATTTATCCTAATGAGCACAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* ** * * *
3638965 ATTCTTAATCACAAAATGAAAAAAGATCATTACTGGAATCCATGCTTGTTTTGTTTGAGGCACGA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* * * * *
3639030 ACTTAGACTTTTCGAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAACATCAATATCGT
131 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGT
* * *
3639095 GTCTCCTTTTGATAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * * * * *
3639160 ATTTATATTTGT-TCTATTTAAAAGACAAACTTTGATTTTATCAAAAATGGTAGAAAGAAAAACT
261 ATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * *
3639224 TTTCTTCCGACACCAAAGCATCAATGTCATCTATCCTAATGAAGGGAATGTGTTCTCGATTCCAA
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAA
* * *
3639289 ATCTTGAAAAGAGTGGAGACTGTTACGAGAATCGATGCTTGTCTTTTTTAAGGGATGAATTTTTG
390 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAA-TTTTG
* *
3639354 ATTTTAA-AAAAATAGGGCCAAG
454 ATTTTAAGGAAAATAGGGCAAAG
*
3639376 AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
3639441 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* * * * * * *
3639506 ACTTAGACTTTACAAAAATTGGTGAGAAAAAAGCCTTTCTTACAAAATCAAAGCGTTAATATCGT
131 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGT
* * ** * *
3639571 GTATCCTTTTGAAAAGACTATGTTTATGGCACCTAATCCTAAAAAGAATGGGGATTAGAATGACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * *
3639636 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAATAGG-AGAAAAAAAAGCT
261 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAAAGAAAAGCT
* * * **
3639700 TTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTTGCTCTTA
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAA
** * **** * * * * * *
3639765 ATGATGAAAAGAACGGAGACAACGATGAGAATTGATGCTTGTTATATTTAGGGGGTGAATTTTAA
390 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGA
*
3639830 TTTTAAGGAAAATAAGGCAAAG
455 TTTTAAGGAAAATAGGGCAAAG
* * * *
3639852 AAAAGTTTTCCATGCAAAAAAAAATCATCAATATCATTTATCATAAAGAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * **
3639917 GTTCTTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTATCCAGTTTGAGGCACGA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* * * * * *
3639982 ACTTAGACTTTACAAATATTGGTGAGAAGAAAGCCTTTCTTGGGAAACCAAAGCGTTAATATCAT
131 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGT
* *
3640047 GTATCCTTATGAGAAGACTTTGTTTACGGTG------CCT------AATGGGGATTAGTATGACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * * * * *
3640100 ATTCATGTTTGTTTTATTTTACA-ATCAATCTTTTATTCTGTCAAAAATGGTGGAAAGAAAAGCC
261 ATTCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG-C
* *
3640164 TTTCCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCA
324 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCA
** * * * *
3640229 AATCTTGAAAAGAACAGAGACTGTCACGAGAGTCGATCCTAGTCATATTTAAGGGATGAATTTTG
389 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTG
*
3640294 ATTTTATGGAAAATAGGGCAAAG
454 ATTTTAAGGAAAATAGGGCAAAG
* *
3640317 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGCTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * *
3640382 GTTCTTAATCACAAAATGAATGAAGATCATTGCTAGAATCCATGATTATCTTGTTTGAGGCACGG
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* * * *
3640447 ACATAGACTTTACAAAAATTGGTGGGAAGAAAGTCTTTTCTTGCGAAACCAAA-TGTCAATATCG
131 ACTTACACTTTACAAAAATTGGTGGGAAGAAAG-CCTTTCTTGCGAAACCAAAGCGTCAATATCG
* * * ** * *
3640511 TGTATCCTTTTGAGAAGACTATGTTTATGGTACTTAATTGTGAAAAGAATAGGAATTAGTATGAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * *
3640576 TATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTATAAAAAACGG-GGTAAA-AACATG
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAGAA-AAG
* * * * *
3640639 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTTAATAAAGGGAATGTGTTATTGGCTCT
323 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCC
* * * * **
3640704 TAATCTTGAAAAGAATGGAGACTATGACGAGAATTGATGCTTGTTGTATTT-AGGGAATGAATTT
388 AAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGG-ATGAATTT
*
3640768 TGATTTTAAGGAAAATAGGGCAAAA
452 TGATTTTAAGGAAAATAGGGCAAAG
* * * * ** *
3640793 AAAAGATTTCCATGCAAAAGAAAATCATAAATATCATTTATCCAAAAGAGGATAATGTACTTAGA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
3640858 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTATCTTGTTTGAGGCACGA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* * * * * *
3640923 ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCTTTTCTTGTGAAACCAAAGCATTAATATCAT
131 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGT
*
3640988 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* *
3641053 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATAAAAAACGGTGGAAAGAAAAGGC-
261 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA-GCT
* *
3641117 TTTCTTGCGACACCAGAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTCTTGGTTCCAA
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAA
* * * * *
3641182 ATCATGAAAAGAATAGAGACTGTTACAAGAATCGATGCCTT-TCATTTTTAAGAGATGAATTTTG
390 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATG-CTTGTCATATTTAAGGGATGAATTTTG
3641246 ATTTTAAGGAAAATAGGGCAAAG
454 ATTTTAAGGAAAATAGGGCAAAG
* * * *
3641269 AAAAGATTTCCATACAAAAGAAAATCATCATTATCATTTATCCTAATGAGTAGATTGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * *
3641334 GTTCTTAGTCACAATATGAATGAAGATAATTACTAGAATGCATGATTATCTTGTTTGAGGCACGA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* *** * * * * * * * *
3641399 ACTTAGACGCCATAAAAATTGCTAGGAAGAAAGCCTTTCTTACAAAATCAAAGCGTTAATATCAT
131 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGT
** *
3641464 GTATAAACCTTATGA-AAGGACTATGTTTATGGTGTGTAATCCTGAAAAGAATAGGGATTAGTAT
196 GTAT---CCTTATGAGAA-GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
* * * * * *
3641528 GACTATTCTTGTTTGTCTTATTTAAGAGCCAAACTTTGATTCTATAAAAAAACAAG-CGAAAAAA
257 GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAAAAAC-GGTGGAAAGAA
* * * * ** *
3641592 AAGGTTTCCTTGTGACACCAAAGCATCAATGTCAAGTATCCCGATGAAGGGAATGTGTTCTTGGC
320 AAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGT
** * *** * * * * * *
3641657 TCTTAATCTTGAAAACAGCAGAGTCTGTGATGAGAATCAATGCTTATTATATTTAAGGGATGAAT
385 TCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAAT
3641722 TTTGATTTTAAGGAAAATAGGGCAAAG
450 TTTGATTTTAAGGAAAATAGGGCAAAG
* * * * * *
3641749 AGAAGATTTCTATGCAAAAGAAAATTATCAATATCATTAATCCTAATGAGGAAAATATGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * *
3641814 GTTGTTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTATCTTGTTTGAGGCACGA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* *** * * * * * * * * *
3641879 ACTTACCATGTTTATC--TTGTTTGAGGCACGAACTTAGACTCTACAAAAATTGGTGGGAA-TAA
131 ACTTA-CA-CTTTA-CAAAAATTGGTGGGAAGAA---AGCCT-TTC-----TT-G-CGAAACCAA
* * * * * * * * * *
3641941 AGC--C--TTTCTTGCAAAACC-AAAGCGTCAATA-TCATGTATCCTTATGTGAAGACTATGTTT
182 AGCGTCAATATCGTG--TATCCTTATGAG--AAGACT-ATG--T--TTATG-G-TGCCTA-----
** * *** ** * * * * * *
3642000 ATGGTGCATAATCCTGAAAAGATTGGGGATTAGTATAACTATTCATGTTGTCTTATTTAAGAGAC
231 ATCCTG-AAAAGAATG--GGGATT-AGTATGACTAT-TC-A-T-GT-TTGTCTTATTTAAGAGAC
* * ** *
3642065 AAACTTTGATTCTGTCAAAAACGGTGGAAAGAAAAGTTTTTCTTATGACACCAAAGCATTAATGT
287 AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
* * * * * * * *
3642130 CATGTACCCAAATGAAGGGAAAGTGTTCTTAGTTCCCAATCTTAAAAAGAGTGGAGACGGTTACG
352 CATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACG
* * * *
3642195 AGAATCGATGCTTGTC-TTTTTAAAGGGATGAACTTTGATTTTATGAAAAATTA-GGCAAAG
417 AGAATCGATGCTTGTCATATTT-AAGGGATGAATTTTGATTTTAAGGAAAA-TAGGGCAAAG
* * *
3642255 AAAAGATTTTCATGTAAAA-AAAATCATCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
** * *
3642319 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACATGA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* * * * **
3642384 TCTTACACTTTACAAAAATTAGTGAGAAGAAAGCCTTCCTT-TTAAACCAAAGCGTCAATATCGT
131 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGT
* * *
3642448 GTATCCTTATGAGAAGACTATGTTTATGGAGCCTAATCTTGAAAAGAATGGGGATTAGTATAACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * * * *
3642513 ATTCATGTTTATCTTACTTAAGAGACAAATTTTGATTCTATCAAAAACGTTGGAAAGAAAACCCT
261 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * ** * * * * *
3642578 TTCCTACGACACTATTGCATCAATGTCATGTATCCTAATAAAAGGAATGTGTTCTTTGCTCCCAA
326 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAA
* * * * * * * * **
3642643 TCTTGAAAAGAGTGGAAAGTATTAAGAGAATCGATGCTTATCTTTTTTAAGGGATGAACCTTGAT
391 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGAT
*
3642708 TTTAAGGAAAATATGG-AAGAG
456 TTTAAGGAAAATAGGGCAA-AG
*
3642729 AAAAGATTTCCATGCAAAAGAAAATCATTAATATCA--T-T--T-AT-------A---G----TA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * ***
3642774 --T-TTAAACACAAAATGAATGAAGATCA-TATCTAGAATACTTGTTTGCCTTACCTGAGGCACG
66 GTTCTTAATCACAAAATGAATGAAGATCATTA-CTAGAATCCATGTTTGTCTTGTTTGAGGCACG
* * * * * * * * *
3642835 AACTTAGACATTAAAAAAATCGGTGGGGAGAAAACCTTTTTTGCGAAATCAAAGCATCAATATCG
130 AACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCG
* ** * * * * * * * *
3642900 TGTATCATTGGGAGAAAACTATGTTTACGATGCCTAATCCTGAAAAGAATAGGTATTAATTTAAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * *
3642965 TATTCATGTTTGTCTTCTTTAAGAGACAAACATTGATTCTATTAAAAAAGGTGGAAAGAAAAGCT
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
** * * * *
3643030 TTTCTTATGACACCGAAGCATCAATGTCATGTATCCCAATAAAGGGAATATGTTCTTGGTTCCAA
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAA
* * * *
3643095 AT-TCCGAAAAGAATGGAGACCGTTATGAGAATCGATGCTTGTCATATTTAAGGGATAAATTTTG
390 ATCT-TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTG
*
3643159 ATTTTAAGAAAAATAGGGCAAAG
454 ATTTTAAGGAAAATAGGGCAAAG
* * * *
3643182 AAAAGATTTCCATGCAGACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * **
3643247 GTCCTTAATGACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* * * * * * *
3643312 ACTTACTCTTTACAAAAATTAGTCGGAAGAATGCCTTTATTGTGAAACCAAAGCATCAATATCGT
131 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGT
* * *
3643377 GTATCCTTATGAGAAGAATATGTTTATGGTGCCAAATCCTTAAAAGAATGGGGATTAGTATGACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * *
3643442 ATTCATTTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAACGGTGGAAAGATAACCTT
261 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * * * * * *
3643506 CTCCTGCAACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGAAATGTGTTCTTAGCTCCCAA
326 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAA
* ** * * *
3643571 TCTTGAAAAAAATGGAGACTGCGATGAGAATCGTTGCTTGTCTTATTTAAGGGATGAATTTTGAT
391 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGAT
* * *
3643636 TTTAAGGAAAATCGAGCGAAG
456 TTTAAGGAAAATAGGGCAAAG
* * * **
3643657 AAAAGAGTTCCGTACTGAAGAAAATCATCAATATCATTTATCCTAAT-----G-A---GTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * *
3643713 GTTCTCAAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTTTTTTGAGGCACG
66 GTTCT-TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACG
* * * * * *
3643778 AACATACAGTTTGCAAAAATTGGTGGGAAGAAAGCCTTCCTTGCGAAACTAAAGTGTCAATATCG
130 AACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCG
*
3643843 TGTATCCTTGTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* *
3643908 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGACTCTATCAGAAACGGTGGAAA-AGAAAGC
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGA-AAAGC
* * * *
3643972 TTTTTTTGCGACACCAAAGCATCAATGTCATGTATCCCAACGAAGGGAATGTGCTCTTGGTTCCA
324 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCA
* * * *
3644037 AATCTTGAAAACAATGTAGACTGTTACGAGAATCAATGCTTGTCATATTTAGGGGATGAATTTTG
389 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTG
* *
3644102 ATTTTAAGAAAAATGGGGCAAAG
454 ATTTTAAGGAAAATAGGGCAAAG
* * * * * *
3644125 AAAAGCTTTGCATGCAGACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * *
3644190 GTCCTTAATGACAAAATGAAAGAAGATCTTTACCTAGAATCCATGTTTGTCTTATTTGAGGCACG
66 GTTCTTAATCACAAAATGAATGAAGATCATTA-CTAGAATCCATGTTTGTCTTGTTTGAGGCACG
* * * * * * * *
3644255 AGCTTACTCTTTACAAAAATTAGTGGGCAA-AATGCCTTTCTTGTGAAACCAAATCATCAATATT
130 AACTTACACTTTACAAAAATTGGTGGG-AAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATC
** * * *
3644319 GTGTATCCTTATGAGAAGACTATGTTTATGGTGTTTAATCCTGAAAAAAAAGGGGATTAATATGA
194 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* *
3644384 CTATTCAT-TTGTGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAACGGTGGAAAGATAAC
259 CTATTCATGTT-TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* * * *
3644447 CTTTTCCTACAACACCAAAGCATCAATGTCATGTATCCCAATGAAGGGAATGTGTTCTTGGTTCC
323 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCC
* * * * *
3644512 AAATCTTGAAAACAATGTAGACTATTACGAGAATCGTTGCTTGTCATATTTAAGGGATGGATTTT
388 AAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTT
* *
3644577 GATTTTGAGGAAAATATGGCAAAG
453 GATTTTAAGGAAAATAGGGCAAAG
* * ** *
3644601 AAAAGATTTCCATGCAAAAGAAAATTATCAATATCATTTAACCTAACAAGGAGAATGAGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
3644666 GTTCTTAATCATAAAATGAATGAAGATCATTACTAGATTCCATGTTT-TCTT-TACTTGAGGCAC
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGT--TTGAGGCAC
* * * * * * **
3644729 AAACTTAAACATTACAAAAATCGGTGGGGAGAAAACCTTTCTTGCGAAATGAAAGCGTCAATATC
129 GAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATC
* * * * * * * *
3644794 ATGTATCGTTGTGAAAAGACTACGTTTACGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGA
194 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * * *
3644859 CTATTCTTATTTGTCTTATTTAAGAGACAAACGTTGATTCTATCAAAATCGGTGGAAGGAAAAGC
259 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* ** * * *
3644924 TTTTTTTGCGACACTGAAGCATCAATGTCAGGTATCCCAATGAAGGGAATATGTTCTTGGTTCCA
324 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCA
* * *
3644989 AATCTTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCATATCTAAGGGTTGAATTTTG
389 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTG
* * *
3645054 ATTTTAAGAAAAATAGGGTAGAG
454 ATTTTAAGGAAAATAGGGCAAAG
* * * * * *
3645077 AAAAGATTTCCGTGCAGACGAAAATCATTAATATCATTTATCCTAATAAGGAGAATGTGATTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * * * *
3645142 GTCCTTAGTGACAAAATGAAAGAAAATTATTACTAGAATCCATGTTTGTCTCGTTTGAGGCACGG
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* * * * *
3645207 ACTTACTCTTTACAAAAATTAGTGGGCAA-AATGCCTTTCTTGTGAAACCAAAGCATCAATATCG
131 ACTTACACTTTACAAAAATTGGTGGG-AAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCG
* * *
3645271 TGTATCTTTATGAGAAGACTATGTTTATGGTGCCTAACCCTGAAACGAATGGGGATTAGTATGAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * *
3645336 TACTT-ATTTTTGTCTTATTTAAGAGAAAAACTTTGATTCTATC-AAAACGGTGGAAAGATAACC
260 TA-TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* ** *
3645399 TTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAACAAAGGGAATGTGTTTTTGGTTCCA
324 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCA
* * * * * * * *
3645464 AATCTTGAAAACAATGTACACTATTGCGAGAATCGTTGCTTGTCATATTTAAGTGACGAATTTTG
389 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTG
*
3645529 ATTTTAAGGAAAATATGGCAAAG
454 ATTTTAAGGAAAATAGGGCAAAG
* *
3645552 AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * *
3645617 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGATTCCTTGTTTGTCTCGTTTGAGGCACAA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* *
3645682 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCGTCAATATCGT
131 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGT
* * *
3645747 GTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* *
3645812 ATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTGTCAAAAACGGTGGAAAGAAAAGCTT
261 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * * *
3645877 TTCTTGCGACACCAAAGCATCAATGTCAGGTATCCCAACGAAAGGAATGTGATCTTGGTTCCAAA
326 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAA
* * * * * **
3645942 TCTTGAAAAGAGTGGAAACTGTTACGAGAATCGATGCTTATCCTTTTTAAGGGATGAACCTTGAT
391 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGAT
3646007 TTTAAGGAAAATA-GG-AAGAG
456 TTTAAGGAAAATAGGGCAA-AG
** * * * *
3646027 AAAAGATTTCCATGCAAAAGAAAATTGTCAATATCATTTACCCTATTTATGAGAATG-GATTTAT
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG-TTTAT
* * * ** *
3646091 AGTACTTAATCACAAAAT-AA-AAAGATCATTACTAGAATCCATGTTTGCCTTACTTGAGGCACA
65 AGTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACG
* * * * * * * * * * *
3646154 AACTTAGACATTACAAAAATCGGTGGGGAGAAAACATTTCCTGTGAAATCAAAGCATCTATATCG
130 AACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCG
* * * * * * * * *
3646219 TGCATCATTGTGAGAAGACTACGTTTACGGTGCCCAATCCTAAAAAGAATGGGGGTTAGTTTGAC
195 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * *
3646284 TCTTCATGTTTGCCTTATTTAGGAGACAAACGTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
260 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* ** * *
3646349 TTTCTTCCGACACTGAAGCATCAATGTCATGTATCCCAATGAAGGGAATTTGTTCTTGGTTCCAA
325 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAA
* * * *
3646414 ATCTTGAAAATAATGGAGACTATTATGAGAATCGATACTTGTCATATTTAAGGGATGAATTTTGA
390 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGA
* *
3646479 TTTTAAGAAAAATAGGGTAAAG
455 TTTTAAGGAAAATAGGGCAAAG
* * * *
3646501 AAAAGATTTCCATGCAGACGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGATTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * * **
3646566 GTCCTTGATGACAAAATGAAAGAAAATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* * * * * * * * * *
3646631 ACTTTACTCTTTACAAAAAATTAGTGTGAGGAATGCCTATCCTGTGAAGCCAAAGCATCAATATC
131 AC-TTACACTTTAC-AAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATC
* * * ** *
3646696 GTGTATCCTCATCAGAAAACTATACTTATGGTGCCCAATCCTGAAAAGAATGGGGATTAGTATGA
194 GTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * * * *
3646761 CTTTTCATTTTTGTCTTATTTAAGAGACAAACTTTGATTCTA-CCAAAATGGTGGAAAGATAACC
259 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * * * * *
3646825 TTTTCCTACAACACCAAAG---CAATGTCATGTATCCTAATGAAGGAAATGTGTTCTTAGCTCCC
324 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCA
* ** * *
3646887 TATCTTGAAAAGAATGGAGACTGGGATGAGAATC-ATTGCTTGTCTTATTTAAGGGATGAATTTT
389 AATCTTGAAAAGAATGGAGACTGTTACGAGAATCGA-TGCTTGTCATATTTAAGGGATGAATTTT
* * **
3646951 GATTTTAAGGAAAATCGAGTGAAG
453 GATTTTAAGGAAAATAGGGCAAAG
* * * * * *
3646975 AAAAGAGTTCCATGCAGAAGAAAATCATCAATAT-ATTTATCCCAATAAGAAGAATGAGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * **
3647039 GTTCTTAATCACAAAGTAAATGAAGATCATTACTAGAATCCAAGTTTGTCTTATTTGAGGCTTGA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* * * * * *
3647104 ACATACACTTTGCAAAAATTGGTGGGAAGGAAGCCTTCCTTGCGAAACCAAAGTGTCAATATCGC
131 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGT
* * *
3647169 GTATCCTCATGAGAAGACTATGTTTGTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGACT
196 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * * *
3647234 ATTCAAGTTTGTCTTATTTGAGGGACAAACTTTGACTCTATCAAAAACGGTGGAAAAAAAAGCTT
261 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * *
3647299 TTCTTGCGACACCAAAGCATCAATGTCATGTACCCCAATGAAAGGAATGTGTTCTTGGTTCCAAA
326 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAA
* * * * * * * *
3647364 TCATG-AAAGCAAAGTAAACTGTTATGAGAATCGTTGCTTGTCATATTTAAGGGACGGATTTTGA
391 TCTTGAAAAG-AATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGA
*
3647428 TTTTAAAGAAAATAGGGCAAAG
455 TTTTAAGGAAAATAGGGCAAAG
* *
3647450 ---TGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
1 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * *
3647512 GTTCTTAATCACAAAAAGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCGTTTGACGCACAA
66 GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
* *
3647577 ACTTACACTTTACAAAAATTGGTAGGAAGAAAGCCTTTCTTGC-AAACCAAAGCATCAATAT
131 ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATAT
3647638 TGAAAGCTCA
Statistics
Matches: 6913, Mismatches: 1182, Indels: 338
0.82 0.14 0.04
Matches are distributed among these distances:
451 2 0.00
452 80 0.01
453 280 0.04
454 2 0.00
455 3 0.00
456 1 0.00
458 1 0.00
459 3 0.00
462 1 0.00
463 3 0.00
464 65 0.01
465 315 0.05
466 29 0.00
467 208 0.03
468 183 0.03
469 4 0.00
470 5 0.00
471 132 0.02
472 85 0.01
473 533 0.08
474 417 0.06
475 988 0.14
476 2326 0.34
477 315 0.05
478 134 0.02
479 103 0.01
480 263 0.04
481 9 0.00
482 6 0.00
483 4 0.00
484 4 0.00
485 4 0.00
486 3 0.00
487 9 0.00
488 7 0.00
489 3 0.00
490 7 0.00
491 10 0.00
492 6 0.00
493 8 0.00
494 6 0.00
495 7 0.00
496 3 0.00
497 5 0.00
498 4 0.00
499 4 0.00
500 2 0.00
501 8 0.00
502 8 0.00
503 5 0.00
504 10 0.00
505 108 0.02
506 149 0.02
507 33 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
GTTCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTTGTTTGAGGCACGA
ACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGT
GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAA
TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGAT
TTTAAGGAAAATAGGGCAAAG
Found at i:3641891 original size:31 final size:31
Alignment explanation
Indices: 3641853--3641914 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
3641843 TTACTAGAAT
3641853 CCATGTTTATCTTGTTTGAGGCACGAACTTA
1 CCATGTTTATCTTGTTTGAGGCACGAACTTA
3641884 CCATGTTTATCTTGTTTGAGGCACGAACTTA
1 CCATGTTTATCTTGTTTGAGGCACGAACTTA
3641915 GACTCTACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.39
Consensus pattern (31 bp):
CCATGTTTATCTTGTTTGAGGCACGAACTTA
Found at i:3648455 original size:32 final size:33
Alignment explanation
Indices: 3648391--3648458 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 33
3648381 CGTTACAAGC
* *
3648391 CAATGTATCGATACATTTTGTGATGTATCGATA
1 CAATATATCGATACATATTGTGATGTATCGATA
3648424 CAATATATCGATACATATTGTG-TGTATCGATA
1 CAATATATCGATACATATTGTGATGTATCGATA
3648456 CAA
1 CAA
3648459 ATTTAGCTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (33 bp):
CAATATATCGATACATATTGTGATGTATCGATA
Found at i:3648520 original size:20 final size:20
Alignment explanation
Indices: 3648491--3648543 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
3648481 CCAATGACTT
* **
3648491 GTATCTATACATTTTTTCAA
1 GTATCGATACATTTAGTCAA
*
3648511 GTATCGATACATTTAGTCAT
1 GTATCGATACATTTAGTCAA
3648531 GTATCGATACATT
1 GTATCGATACATT
3648544 GTATCGATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.43
Consensus pattern (20 bp):
GTATCGATACATTTAGTCAA
Found at i:3653826 original size:13 final size:13
Alignment explanation
Indices: 3653808--3653833 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3653798 ACATTTTGTG
3653808 ATGTATCGATACA
1 ATGTATCGATACA
3653821 ATGTATCGATACA
1 ATGTATCGATACA
3653834 TATTGTGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3653828 original size:33 final size:32
Alignment explanation
Indices: 3653786--3653853 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 32
3653776 CGTTACAAGC
*
3653786 CAATGTATCGATACATTTTGTGATGTATCGATA
1 CAATGTATCGATACATATTGTG-TGTATCGATA
3653819 CAATGTATCGATACATATTGTGTGTATCGATA
1 CAATGTATCGATACATATTGTGTGTATCGATA
3653851 CAA
1 CAA
3653854 ATTTAGCTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 13 0.38
33 21 0.62
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (32 bp):
CAATGTATCGATACATATTGTGTGTATCGATA
Found at i:3653911 original size:20 final size:20
Alignment explanation
Indices: 3653886--3653938 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
3653876 CCAATGACTT
**
3653886 GTATCGATACATTTTTTCAA
1 GTATCGATACATTTAGTCAA
*
3653906 GTATCGATACATTTAGTCAT
1 GTATCGATACATTTAGTCAA
*
3653926 GTATTGATACATT
1 GTATCGATACATT
3653939 GTATCGATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (20 bp):
GTATCGATACATTTAGTCAA
Found at i:3655949 original size:475 final size:474
Alignment explanation
Indices: 3654395--3658426 Score: 5394
Period size: 475 Copynumber: 8.5 Consensus size: 474
3654385 GAAAAGAAAA
* * *
3654395 GCTTTTCATATTTAAGGGA-CAGATTTTGATTTTAAAGAAAATAGGGCAAAG--AA-ATTTCCAT
1 GCTTGTCATATTTAAGGGATGA-ATTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTCCAT
* * **
3654456 GCAGATGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTGGTAG-TCGTTAATGAC
64 GCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTTC-TTAATGAC
* * *
3654520 AAAATGAAAGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGTCATGAACTTACTCTTTA
128 AAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTA
* * *
3654585 CAAAAATTAGTTGA-CAAAACGCCTTTCTTGTTAAACCAAAGCATCAATATCGTGTATCCTTATG
193 CAAAAATTAG-TGAGCAAAATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCTTTATG
*
3654649 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTAGTATGACTATTCATTTTTG
257 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTG
* * * *
3654714 TCTTATTTAAGAGACAAACTTTAATTCTATCAAAACGGTGGAAAGATAGCC-TTTCCTACAACAC
322 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGAAAACCTTTTCCTGCAACAC
* * *
3654778 CACAGCATCAATGTCATGTATCCCAGTGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAATAA
387 CAAAGCATCAATGTCATGTATCCCAATGAAGGGAATATGTTCTTGGTTCCAAATCTTGAAAATAA
* *
3654843 TGTAGACTATTACGAGAATCGTT
452 TGGAGACTATTACGAGAATCGAT
* * **
3654866 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATATGGCAAAAAAAAGATTTTCACA
1 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTCCATG
* *
3654931 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGA-GTTTATAGTTCTTAATCACA
65 CAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAAT-ATGTTTATAGTTCTTAATGACA
* * * * * ** * *
3654995 AAATGAATGAAGATCATGACTAGAGTCCATGTTT-TCCTTACTTGAGGCACGAACTTAAACATCA
129 AAATGAAAGAAGATCATTACTAGAATCCATGTTTGT-CTCATTTGAGGCACGAACTTACTCTTTA
* * * * * * ** * * *
3655059 CAAAAATTGGTGGGGAGAAA-ACTTTTCTTGCGAAATGAAAGCGTCAATATCGTGTATCGTTGTG
193 CAAAAATTAGTGAGCA-AAATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCTTTATG
** * * * *
3655123 AGAAGACTACATTTACGGTGCCTAATCCTGAAAAGAATCGGGATTAGTTTGACTATTCATGTTTG
257 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTG
* * * * *
3655188 TCTTATTTAAGAGACAAACGTTGATTCTATCAAAACCGGTGGAAGGAAAAGCTTTTCTTGCAATA
322 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAA-CGGTGGAAAGAAAACCTTTTCCTGCAACA
*** *
3655253 TGGAAGCATCAATGTCATGTACCCCAATGAAGGGAATATGTTCTTGGTTCCAAATCTTGAAAATA
386 CCAAAGCATCAATGTCATGTATCCCAATGAAGGGAATATGTTCTTGGTTCCAAATCTTGAAAATA
* *
3655318 ATGGGGACTATTACGAGTATCGAT
451 ATGGAGACTATTACGAGAATCGAT
* * * * *
3655342 GCTTGTCATATTTAATGGTTGAATTTTGATTTTAAGAAAAATAGGGCAAGGAAAAGATTTTCATG
1 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTCCATG
* *
3655407 CAGACA-AAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACA
65 CA-AAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTTCTTAATGACA
*
3655471 AAATGAAAGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTACTCTTTAC
129 AAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTAC
*
3655536 AAAAATTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAATCATCAATATCGTGTATCTTTATGAG
194 AAAAATTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCTTTATGAG
3655601 AAGACTATGTTTATGGTGCCTAA-CCTTGAAAAGAATGGGGATTAGTATGACTACTT-ATTTTTG
259 AAGACTATGTTTATGGTGCCTAATCC-TGAAAAGAATGGGGATTAGTATGACTA-TTCATTTTTG
* *
3655664 TCATATTTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGATAACCTTTTCCTGCAACAC
322 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGAAAACCTTTTCCTGCAACAC
* * ** * * *
3655729 CAAAGCATCAATGTCGTGTATCCTAACAAAGGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAA
387 CAAAGCATCAATGTCATGTATCCCAATGAAGGGAATATGTTCTTGGTTCCAAATCTTGAAAATAA
* * * * *
3655794 TGTACACTGTTGCGAGAATCGTT
452 TGGAGACTATTACGAGAATCGAT
*
3655817 GCTTGTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAAAGAAAAGATTTCCATG
1 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTCCATG
* * *
3655882 CAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTATAGTTCTTAATCACAA
65 CAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTTCTTAATGACAA
* * * * * *
3655947 AATGAATGAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCACGAACTTACACTTTACA
130 AATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACA
* * * * ** *
3656012 AAAATTGGTG-GGAAGAAAGCCTTTGTTGCAAAACCAAAGCGTCAATATCGTGTATCCTTT-TGA
195 AAAATTAGTGAGCAA-AATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTAT-CTTTATGA
* * * *
3656075 GAATACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGACTATTCATATTTGT
258 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGT
* * * *
3656140 CTTATTTAACAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAAGGCTTTTCTTGCGACA
323 CTTATTTAAGAGACAAACTTTGATTCTATC-AAAACGGTGGAAAGAAAA-CCTTTTCCTGCAACA
* *
3656204 CCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCTTGGTTCCAAATCTTGAAAATA
386 CCAAAGCATCAATGTCATGTATCCCAATGAAGGGAATATGTTCTTGGTTCCAAATCTTGAAAATA
* * *
3656269 ATGGGGATTATTACGAGTATCGAT
451 ATGGAGACTATTACGAGAATCGAT
* * *
3656293 GTTTGTCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGAAGAGAAAAGATTTCCATG
1 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGCAA-AGAAAAGATTTCCATG
* * *
3656358 CAAAAAAAAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGAC
65 C--AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTTCTTAATGAC
* *
3656423 AAAATGAAAGAAGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACGAATTTACTCTTTA
128 AAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTA
* * *
3656488 CAAAAATTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAATCATCAATATTGTGTATCTTTAGGA
193 CAAAAATTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCTTTATGA
*
3656553 GAAGACTATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGTATGACTACTT-ATTTTTG
258 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA-TTCATTTTTG
* *
3656617 TCATATTTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGATAACCTTTTCCTGCAACAC
322 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGAAAACCTTTTCCTGCAACAC
* * ** * * *
3656682 CAAAGCATCAATGTCGTGTATCCTAACAAAGGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAA
387 CAAAGCATCAATGTCATGTATCCCAATGAAGGGAATATGTTCTTGGTTCCAAATCTTGAAAATAA
* * * * *
3656747 TGTACACTGTTGCGAGAATCGTT
452 TGGAGACTATTACGAGAATCGAT
*
3656770 GCTTGTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAAAGAAAAGATTTCCATG
1 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTCCATG
* * *
3656835 CAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTATAGTTCTTAATCACAA
65 CAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTTCTTAATGACAA
* * * * * *
3656900 AATGAATGAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCACGAACTTACACTTTACA
130 AATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACA
* * * * ** *
3656965 AAAATTGGTG-GGAAGAAAGCCTTTGTTGCAAAACCAAAGCGTCAATATCGTGTATCCTTT-TGA
195 AAAATTAGTGAGCAA-AATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTAT-CTTTATGA
* * * *
3657028 GAATACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGACTATTCATATTTGT
258 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGT
* * * *
3657093 CTTATTTAACAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAAGGCTTTTCTTGCGACA
323 CTTATTTAAGAGACAAACTTTGATTCTATC-AAAACGGTGGAAAGAAAA-CCTTTTCCTGCAACA
* *
3657157 CCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCTTGGTTCCAAATCTTGAAAATA
386 CCAAAGCATCAATGTCATGTATCCCAATGAAGGGAATATGTTCTTGGTTCCAAATCTTGAAAATA
* * *
3657222 ATGGGGATTATTACGAGTATCGAT
451 ATGGAGACTATTACGAGAATCGAT
* * *
3657246 GTTTGTCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGAAGAGAAAAGATTTCCATG
1 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGCAA-AGAAAAGATTTCCATG
* * *
3657311 CAAAAAAAAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGAC
65 C--AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTTCTTAATGAC
* *
3657376 AAAATGAAAGAAGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACGAATTTACTCTTTA
128 AAAATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTA
* * *
3657441 CAAAAATTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAATCATCAATATTGTGTATCTTTAGGA
193 CAAAAATTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCTTTATGA
*
3657506 GAAGACTATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGTATGACTACTT-ATTTTTG
258 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA-TTCATTTTTG
* *
3657570 TCATATTTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGATAACCTTTTCCTGCAACAC
322 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGAAAACCTTTTCCTGCAACAC
* * ** * * *
3657635 CAAAGCATCAATGTCGTGTATCCTAACAAAGGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAA
387 CAAAGCATCAATGTCATGTATCCCAATGAAGGGAATATGTTCTTGGTTCCAAATCTTGAAAATAA
* * * * *
3657700 TGTACACTGTTGCGAGAATCGTT
452 TGGAGACTATTACGAGAATCGAT
*
3657723 GCTTGTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAAAGAAAAGATTTCCATG
1 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGATTTCCATG
* * * * *
3657788 CAAAAGAAAATCATCTATATCATTTATCCTAATCATGAGAATGTGTTTATAGTTCTTAATCACAA
65 CAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTTCTTAATGACAA
* * * * * *
3657853 AATGAATGAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCACGAACTTACACTTTACA
130 AATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACA
* * * * ** *
3657918 AAAATTGGTG-GGAAGAAAGCCTTTGTTGCAAAACCAAAGCGTCAATATCGTGTATCCTTT-TGA
195 AAAATTAGTGAGCAA-AATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTAT-CTTTATGA
* * *
3657981 GAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGACTATTCATATTTGT
258 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGT
* * * *
3658046 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACAC
323 CTTATTTAAGAGACAAACTTTGATTCTATC-AAAACGGTGGAAAGAAAACCTTTTCCTGCAACAC
* *
3658111 CGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCTTGGTTCCAAATCTTGAAAATAA
387 CAAAGCATCAATGTCATGTATCCCAATGAAGGGAATATGTTCTTGGTTCCAAATCTTGAAAATAA
* * *
3658176 TGGGGATTATTACGAGTATCGAT
452 TGGAGACTATTACGAGAATCGAT
* * * *
3658199 GTTTGTCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGAAGAGAAAAGATTTTCATG
1 GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGCAA-AGAAAAGATTTCCATG
* * *
3658264 CAAAA-AAAATCGTAAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACAA
65 CAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTTCTTAATGACAA
* * *
3658328 AATGAAGGAAGATCATTACTGGAATTCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACA
130 AATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACA
3658393 AAAATTAGTGAGCAAAATGCCTTTCTTGTGAAAC
195 AAAATTAGTGAGCAAAATGCCTTTCTTGTGAAAC
3658427 TGATGACAAC
Statistics
Matches: 3074, Mismatches: 436, Indels: 98
0.85 0.12 0.03
Matches are distributed among these distances:
471 44 0.01
472 1 0.00
473 5 0.00
474 262 0.09
475 1059 0.34
476 870 0.28
477 321 0.10
478 502 0.16
479 10 0.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
GCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGCAAAGAAAAGATTTCCATGC
AAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTTCTTAATGACAAA
ATGAAAGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACAA
AAATTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATCTTTATGAGAA
GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATTTTTGTCTT
ATTTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGAAAACCTTTTCCTGCAACACCAAA
GCATCAATGTCATGTATCCCAATGAAGGGAATATGTTCTTGGTTCCAAATCTTGAAAATAATGGA
GACTATTACGAGAATCGAT
Found at i:3656783 original size:953 final size:950
Alignment explanation
Indices: 3654400--3658426 Score: 6896
Period size: 953 Copynumber: 4.2 Consensus size: 950
3654390 GAAAAGCTTT
*
3654400 TCATATTTAAGGGA-CAGATTTTGATTTTAA-AGAAAATAGGGCAA-AG--AA-ATTTCCATGCA
1 TCATATTTAAGGGATGA-ATTTTGATTTTAAGA-AAAATAGGG-AAGAGAAAAGATTTCCATGCA
* ** * ** *
3654459 GATGAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTGGTAGTCGTTAATGACAAAA
63 AAAAAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACAAAA
* *
3654524 TGAAAGAAGATCATTACTAGAA-TCTATGTTTGTCTCATTTGAGTCATGAACTTACTCTTTACAA
128 TGAAAGAAGATCATTACTAGAATTC-ATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACAA
* * * * *
3654588 AAATTAGTTGA-CAAAACGCCTTTCTTGTTAAACCAAAGCATCAATATCGTGTATCCTTATGAGA
192 AAATTAG-TGAGCAAAATGCCTTTCTTGTGAAACCAAATCATCAATATCGTGTATCTTTAGGAGA
* *
3654652 AGACTATGTTTATGGTGCCTAATCCTGAAAAGAGTGGGGATTAGTATGACTA-TTCATTTTTGTC
256 AGACTATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGTATGACTACTT-ATTTTTGTC
* * * *
3654716 TTATTTAAGAGACAAACTTTAATTCTATCAAAACGGTGGAAAGATAGCC-TTTCCTACAACACCA
320 ATATTTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGATAACCTTTTCCTGCAACACCA
* * * *** * *
3654780 CAGCATCAATGTCATGTATCCCAGTGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAATAATG
385 AAGCATCAATGTCGTGTATCCTAACAAAGGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAATG
* * * * *
3654845 TAGACTATTACGAGAATCGTTGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGGAAAATAT
450 TACACTGTTGCGAGAATCGTTGCTTGTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATAC
* * ** * *
3654910 GGCAAAAAAAAGATTTTCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGA
515 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGT
* * * * *
3654975 GTTTATAGTTCTTAATCACAAAATGAATGAAGATCATGACTAGAGTCCATGTTT-TC-CTTACTT
580 GTTTATAGTTCTTAATCACAAAATGAATGAAGATCATTACTACATTCCTTGTTTGTCTCGT--TT
* * * * * * * * **
3655038 GAGGCACGAACTTAAACATCACAAAAATTGGTGGGGAGAAAACTTTTCTTGCGAAATGAAAGCGT
643 GAGGCACGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCGT
* * ** * *
3655103 CAATATCGTGTATCGTTGTGAGAAGACTACATTTACGGTGCCTAATCCTGAAAAGAATCG-GGAT
708 CAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAAT-GTGGAT
* * * * *
3655167 TAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACGTTGATTCTATCAAAACCGGTGGAA
772 TAGTATGACTATTCATATTTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* * * ** * *
3655232 GGAAAAGCTTTTCTTGCAATATGGAAGCATCAATGTCATGTACCCCAATGAAGGGAATATGTTCT
837 -AAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCT
* *
3655297 TGGTTCCAAATCTTGAAAATAATGGGGACTATTACGAGTATCGATGCTTG
901 TGGTTCCAAATCTTGAAAATAATGGGGATTATTACGAGTATCGATGTTTG
* * * *
3655347 TCATATTTAATGGTTGAATTTTGATTTTAAGAAAAATAGGGCAAG-GAAAAGATTTTCATGCAGA
1 TCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGG-AAGAGAAAAGATTTCCATGCAAA
* *
3655411 CAAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACAAAATG
65 AAAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACAAAATG
* *
3655476 AAAGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTACTCTTTACAAAAA
130 AAAGAAGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACAAAAA
*
3655541 TTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAATCATCAATATCGTGTATCTTTATGAGAAGAC
195 TTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAATCATCAATATCGTGTATCTTTAGGAGAAGAC
*
3655606 TATGTTTATGGTGCCTAACCTTGAAAAGAATGGGGATTAGTATGACTACTTATTTTTGTCATATT
260 TATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGTATGACTACTTATTTTTGTCATATT
3655671 TAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGCA
325 TAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGCA
3655736 TCAATGTCGTGTATCCTAACAAAGGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAATGTACAC
390 TCAATGTCGTGTATCCTAACAAAGGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAATGTACAC
3655801 TGTTGCGAGAATCGTTGCTTGTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAA
455 TGTTGCGAGAATCGTTGCTTGTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAA
3655866 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTA
520 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTA
3655931 TAGTTCTTAATCACAAAATGAATGAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCAC
585 TAGTTCTTAATCACAAAATGAATGAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCAC
3655996 GAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCGTCAATATC
650 GAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCGTCAATATC
*
3656061 GTGTATCCTTTTGAGAATACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGA
715 GTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGA
3656126 CTATTCATATTTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGGC
780 CTATTCATATTTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAA-GC
3656191 TTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCTTGGTTCCA
844 TTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCTTGGTTCCA
3656256 AATCTTGAAAATAATGGGGATTATTACGAGTATCGATGTTTG
909 AATCTTGAAAATAATGGGGATTATTACGAGTATCGATGTTTG
3656298 TCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGAAGAGAAAAGATTTCCATGCAAAA
1 TCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGAAGAGAAAAGATTTCCATGC--AA
3656363 AAAAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACAAAAT
64 AAAAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACAAAAT
*
3656428 GAAAGAAGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACGAATTTACTCTTTACAAAA
129 GAAAGAAGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACAAAA
*
3656493 ATTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAATCATCAATATTGTGTATCTTTAGGAGAAGA
194 ATTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAATCATCAATATCGTGTATCTTTAGGAGAAGA
3656558 CTATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGTATGACTACTTATTTTTGTCATAT
259 CTATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGTATGACTACTTATTTTTGTCATAT
3656623 TTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGC
324 TTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGC
3656688 ATCAATGTCGTGTATCCTAACAAAGGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAATGTACA
389 ATCAATGTCGTGTATCCTAACAAAGGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAATGTACA
3656753 CTGTTGCGAGAATCGTTGCTTGTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCA
454 CTGTTGCGAGAATCGTTGCTTGTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCA
3656818 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTT
519 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTT
3656883 ATAGTTCTTAATCACAAAATGAATGAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCA
584 ATAGTTCTTAATCACAAAATGAATGAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCA
3656948 CGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCGTCAATAT
649 CGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCGTCAATAT
*
3657013 CGTGTATCCTTTTGAGAATACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATG
714 CGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATG
3657078 ACTATTCATATTTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGG
779 ACTATTCATATTTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAA-G
3657143 CTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCTTGGTTCC
843 CTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCTTGGTTCC
3657208 AAATCTTGAAAATAATGGGGATTATTACGAGTATCGATGTTTG
908 AAATCTTGAAAATAATGGGGATTATTACGAGTATCGATGTTTG
3657251 TCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGAAGAGAAAAGATTTCCATGCAAAA
1 TCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGAAGAGAAAAGATTTCCATGC--AA
3657316 AAAAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACAAAAT
64 AAAAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACAAAAT
*
3657381 GAAAGAAGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACGAATTTACTCTTTACAAAA
129 GAAAGAAGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACAAAA
*
3657446 ATTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAATCATCAATATTGTGTATCTTTAGGAGAAGA
194 ATTAGTGAGCAAAATGCCTTTCTTGTGAAACCAAATCATCAATATCGTGTATCTTTAGGAGAAGA
3657511 CTATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGTATGACTACTTATTTTTGTCATAT
259 CTATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGTATGACTACTTATTTTTGTCATAT
3657576 TTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGC
324 TTAAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGC
3657641 ATCAATGTCGTGTATCCTAACAAAGGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAATGTACA
389 ATCAATGTCGTGTATCCTAACAAAGGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAATGTACA
3657706 CTGTTGCGAGAATCGTTGCTTGTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCA
454 CTGTTGCGAGAATCGTTGCTTGTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCA
* *
3657771 AAGAAAAGATTTCCATGCAAAAGAAAATCATCTATATCATTTATCCTAATCATGAGAATGTGTTT
519 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTT
3657836 ATAGTTCTTAATCACAAAATGAATGAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCA
584 ATAGTTCTTAATCACAAAATGAATGAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCA
3657901 CGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCGTCAATAT
649 CGAACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCGTCAATAT
3657966 CGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATG
714 CGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATG
* *
3658031 ACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAG
779 ACTATTCATATTTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAAG
3658096 CTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCTTGGTTCC
843 CTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCTTGGTTCC
3658161 AAATCTTGAAAATAATGGGGATTATTACGAGTATCGATGTTTG
908 AAATCTTGAAAATAATGGGGATTATTACGAGTATCGATGTTTG
*
3658204 TCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGAAGAGAAAAGATTTTCATGC-AAA
1 TCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGAAGAGAAAAGATTTCCATGCAAAA
*
3658268 AAAAATCGTAAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACAAAATGA
66 AAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACAAAATGA
* *
3658333 AGGAAGATCATTACTGGAATTCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACAAAAAT
131 AAGAAGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACAAAAAT
3658398 TAGTGAGCAAAATGCCTTTCTTGTGAAAC
196 TAGTGAGCAAAATGCCTTTCTTGTGAAAC
3658427 TGATGACAAC
Statistics
Matches: 2961, Mismatches: 101, Indels: 33
0.96 0.03 0.01
Matches are distributed among these distances:
947 38 0.01
948 2 0.00
949 5 0.00
950 454 0.15
951 570 0.19
952 2 0.00
953 1886 0.64
954 4 0.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (950 bp):
TCATATTTAAGGGATGAATTTTGATTTTAAGAAAAATAGGGAAGAGAAAAGATTTCCATGCAAAA
AAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTCCTTAATGACAAAATGA
AAGAAGATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACAAAAAT
TAGTGAGCAAAATGCCTTTCTTGTGAAACCAAATCATCAATATCGTGTATCTTTAGGAGAAGACT
ATGTTTATGGTGCCTAACCCTGAAAAGAATGGGGATTAGTATGACTACTTATTTTTGTCATATTT
AAGAGACAAACTTTGATTCTATCAAAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGCAT
CAATGTCGTGTATCCTAACAAAGGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAATGTACACT
GTTGCGAGAATCGTTGCTTGTCATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAAA
GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTAT
AGTTCTTAATCACAAAATGAATGAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCACG
AACTTACACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGTTGCAAAACCAAAGCGTCAATATCG
TGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAC
TATTCATATTTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCTT
TTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCTTGGTTCCAAA
TCTTGAAAATAATGGGGATTATTACGAGTATCGATGTTTG
Found at i:3658085 original size:158 final size:158
Alignment explanation
Indices: 3654605--3658229 Score: 855
Period size: 159 Copynumber: 22.9 Consensus size: 158
3654595 TTGACAAAAC
** * *
3654605 GCCTTTCTTGTTAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGC
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGTTC
* * * * *
3654670 CTAATCCTGAAAAGAGTGGGGATTAGTATGACTATTCATTTTTGTCTTATTTAAGAGACAAACTT
66 CTAATCCAGAAAAGAATGTGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACGAACTT
* * *
3654735 TAATTCTATC-AAAACGGTGGAAAGATA
131 TGATTCTATCAAAAATGGTGGAAAGAAA
* * * * * * * * *
3654762 GCCTTTCCTACAACACCACAGCATCAATGTCATGTATCC-CAGTGA-AGGGAATGTGTTCT-TGG
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTA-TGAGA-AGAATATGTT-TATGG
* ** * * * * * * * * * * * *
3654824 TTCCAAATCTTGAAAATAATGTAGACTATTACGA-GAATCGTTGCTTGTCATATTTAAGGGATGA
63 TTCCTAATCCAGAAAAGAATGTGGATTAGTATGACTATTC-ATGTTTGTCTTATTTAAGAGACGA
* * ** ** *
3654888 ATTTTGATTTTAAGGAAAATATGG-CAAAAAAAA
127 ACTTTGATTCT-ATCAAAA-ATGGTGGAAAGAAA
** *** ** * * * * * *
3654921 GATTTTCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGA-GTTTATAGTT
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAAT-ATGTTTATGGTT
* * ** * * * *
3654985 CTTAATCACA-AAATGAATGAAGA-T--CATGACTAGAGTCCATGTTT-TCCTTACTTGAG-GCA
65 CCTAATC-CAGAAAAGAATGTGGATTAGTATGACT--A-TTCATGTTTGT-CTTATTTAAGAG-A
** * **
3655044 CGAACTTAAACATC-A-CAAAAATTGGTGGGGAGAAA
124 CGAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAA
* * * ** * * * * ** * *
3655079 ACTTTTCTTGCGAAATGAAAGCGTCAATATCGTGTATCGTTGTGAGAAGACTACATTTACGGTGC
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGTTC
* * * *
3655144 CTAATCCTGAAAAGAATCG-GGATTAGTTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACG
66 CTAATCCAGAAAAGAAT-GTGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACGAACT
** *
3655208 TTGATTCTATCAAAACCGGTGGAAGGAAAA
130 TTGATTCTATCAAAAATGGTGGAAAG-AAA
* * *** * * * ** *
3655238 GCTTTTCTTGCAATATGGAAGCATCAATGTCATGTACCCCAATGA-AGGGAATATGTTCT-TGGT
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGA-AGAATATGTT-TATGGT
* ** * * * * * * * * **
3655301 TCCAAATCTTGAAAATAATGGGGACTATTACGAGTA-TCGATGCTTGTCATATTTAATG-GTTGA
64 TCCTAATCCAGAAAAGAATGTGGATTAGTATGACTATTC-ATGTTTGTCTTATTTAA-GAGACGA
* * ** * *
3655364 ATTTTGATTTTAAGAAAAATAGG-GCAAGGAAAA
127 ACTTTGATTCTATCAAAAAT-GGTGGAAAG-AAA
** * * * * * * * *
3655397 GATTTTCATGCAGACAA--AAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAG-
1 GCCTTTCTTGCA-A-AACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGT
* * * ** * * * * * *
3655459 TCCTTAATGACA-AAATGAAAGAAGATCATTACTAGA--ATCCATATTTGTCTCATTTGAG-GCA
64 TCC-TAAT-CCAGAAAAGAATGTGGATTAGTA-T-GACTATTCATGTTTGTCTTATTTAAGAG-A
* * * * *
3655520 CGAAC-TT-ACTCTTTACAAAAATTAGTGAGCAA-AAT
124 CGAACTTTGATTCTAT-CAAAAA-TGGTG-GAAAGAAA
** * * * *
3655555 GCCTTTCTTGTGAAACCAAATCATCAATATCGTGTATCTTTATGAGAAGACTATGTTTATGGTGC
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGTTC
* * * * *
3655620 CTAA-CCTTGAAAAGAATGGGGATTAGTATGACTACTT-ATTTTTGTCATATTTAAGAGACAAAC
66 CTAATCC-AGAAAAGAATGTGGATTAGTATGACTA-TTCATGTTTGTCTTATTTAAGAGACGAAC
*
3655683 TTTGATTCTATC-AAAACGGTGGAAAGATAA
129 TTTGATTCTATCAAAAATGGTGGAAAGA-AA
* * * ** * *
3655713 -CCTTTTCCTGCAACACCAAAGCATCAATGTCGTGTATCC-TAACA-AAGGGAATGTGTTCT-TA
1 GCC-TTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA--GAATATGTT-TATG
* ** * ** * * * * * * *
3655774 GTTCCAAATCTTGAAAACAATGTACACT-GT-TG-CGAGAATCGTTGCTTGTCATATTTAAGTGA
62 GTTCCTAATCCAGAAAAGAATGTGGATTAGTATGAC--TATTC-ATGTTTGTCTTATTTAAGAGA
* * * *** * *
3655836 TGAATTTTGATTTTAAGGAAAATACG-GCAAAGAAAA
124 CGAACTTTGATTCTATCAAAAAT-GGTGGAAAG-AAA
* * ** * * * * * * * *
3655872 G-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTATAGTT
1 GCCTTT-CTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGTT
* * ** * * * ** *
3655936 CTTAATCACA-AAATGAATGAAGATCATTACT-AC-ATTCCTTGTTTGTCTCGTTTGAG-GCACG
65 CCTAATC-CAGAAAAGAATGTGGATTAGTA-TGACTATT-CATGTTTGTCTTATTTAAGAG-ACG
** *
3655997 AACTTACACTT-TA-CAAAAATTGGTGGGAAGAAA
126 AACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAA
* * * * * *
3656030 GCCTTTGTTGCAAAACCAAAGCGTCAATATCGTGTATCCTTTTGAGAATACTATGTTTATGGTGC
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGTTC
* * *
3656095 CTAATCCAGAAAAGAATGTGGATTAGTATGACTATTCATATTTGTCTTATTTAACAGACAAACTT
66 CTAATCCAGAAAAGAATGTGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACGAACTT
* *
3656160 TGATTCTATCAAAAACGGTGGAAAAAAA
131 TGATTCTATCAAAAATGGTGGAAAGAAA
* * * * * * ** **
3656188 GGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCT-TGGT
1 -GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTT-TATGGT
* ** * * * * * * * *
3656252 TCCAAATCTTGAAAATAATGGGGATTATTACGAGTA-TCGATGTTTGTCATATTTAAGGGATGAA
64 TCCTAATCCAGAAAAGAATGTGGATTAGTATGACTATTC-ATGTTTGTCTTATTTAAGAGACGAA
* * ** *
3656316 TTTTGATTTTAAGAAAAATAG-GGAAGAGAAAA
128 CTTTGATTCTATCAAAAATGGTGGAA-AG-AAA
* * ** * * * * * * * *
3656348 G-ATTTCCATGCAAAAAAAAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAG
1 GCCTTT-CTTGC--AAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGG
* * * ** * * * *
3656412 -TCCTTAATGACA-AAATGAAAGAAGATCATTACTAGA--ATTCATGTTTGTCTCATTTGAG-GC
63 TTCC-TAAT-CCAGAAAAGAATGTGGATTAGTA-T-GACTATTCATGTTTGTCTTATTTAAGAG-
* * * * *
3656472 ACGAA-TTT-ACTCTTTACAAAAATTAGTGAGCAA-AAT
123 ACGAACTTTGATTCTAT-CAAAAA-TGGTG-GAAAGAAA
** * * * * * *
3656508 GCCTTTCTTGTGAAACCAAATCATCAATATTGTGTATCTTTAGGAGAAGACTATGTTTATGGTGC
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGTTC
* * * * * *
3656573 CTAACCCTGAAAAGAATGGGGATTAGTATGACTACTT-ATTTTTGTCATATTTAAGAGACAAACT
66 CTAATCCAGAAAAGAATGTGGATTAGTATGACTA-TTCATGTTTGTCTTATTTAAGAGACGAACT
*
3656637 TTGATTCTATC-AAAACGGTGGAAAGATAA
130 TTGATTCTATCAAAAATGGTGGAAAGA-AA
* * * ** * *
3656666 -CCTTTTCCTGCAACACCAAAGCATCAATGTCGTGTATCC-TAACA-AAGGGAATGTGTTCT-TA
1 GCC-TTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA--GAATATGTT-TATG
* ** * ** * * * * * * *
3656727 GTTCCAAATCTTGAAAACAATGTACACT-GT-TG-CGAGAATCGTTGCTTGTCATATTTAAGTGA
62 GTTCCTAATCCAGAAAAGAATGTGGATTAGTATGAC--TATTC-ATGTTTGTCTTATTTAAGAGA
* * * *** * *
3656789 TGAATTTTGATTTTAAGGAAAATACG-GCAAAGAAAA
124 CGAACTTTGATTCTATCAAAAAT-GGTGGAAAG-AAA
* * ** * * * * * * * *
3656825 G-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTATAGTT
1 GCCTTT-CTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGTT
* * ** * * * ** *
3656889 CTTAATCACA-AAATGAATGAAGATCATTACT-AC-ATTCCTTGTTTGTCTCGTTTGAG-GCACG
65 CCTAATC-CAGAAAAGAATGTGGATTAGTA-TGACTATT-CATGTTTGTCTTATTTAAGAG-ACG
** *
3656950 AACTTACACTT-TA-CAAAAATTGGTGGGAAGAAA
126 AACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAA
* * * * * *
3656983 GCCTTTGTTGCAAAACCAAAGCGTCAATATCGTGTATCCTTTTGAGAATACTATGTTTATGGTGC
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGTTC
* * *
3657048 CTAATCCAGAAAAGAATGTGGATTAGTATGACTATTCATATTTGTCTTATTTAACAGACAAACTT
66 CTAATCCAGAAAAGAATGTGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACGAACTT
* *
3657113 TGATTCTATCAAAAACGGTGGAAAAAAA
131 TGATTCTATCAAAAATGGTGGAAAGAAA
* * * * * * ** **
3657141 GGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCT-TGGT
1 -GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTT-TATGGT
* ** * * * * * * * *
3657205 TCCAAATCTTGAAAATAATGGGGATTATTACGAGTA-TCGATGTTTGTCATATTTAAGGGATGAA
64 TCCTAATCCAGAAAAGAATGTGGATTAGTATGACTATTC-ATGTTTGTCTTATTTAAGAGACGAA
* * ** *
3657269 TTTTGATTTTAAGAAAAATAG-GGAAGAGAAAA
128 CTTTGATTCTATCAAAAATGGTGGAA-AG-AAA
* * ** * * * * * * * *
3657301 G-ATTTCCATGCAAAAAAAAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAG
1 GCCTTT-CTTGC--AAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGG
* * * ** * * * *
3657365 -TCCTTAATGACA-AAATGAAAGAAGATCATTACTAGA--ATTCATGTTTGTCTCATTTGAG-GC
63 TTCC-TAAT-CCAGAAAAGAATGTGGATTAGTA-T-GACTATTCATGTTTGTCTTATTTAAGAG-
* * * * *
3657425 ACGAA-TTT-ACTCTTTACAAAAATTAGTGAGCAA-AAT
123 ACGAACTTTGATTCTAT-CAAAAA-TGGTG-GAAAGAAA
** * * * * * *
3657461 GCCTTTCTTGTGAAACCAAATCATCAATATTGTGTATCTTTAGGAGAAGACTATGTTTATGGTGC
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGTTC
* * * * * *
3657526 CTAACCCTGAAAAGAATGGGGATTAGTATGACTACTT-ATTTTTGTCATATTTAAGAGACAAACT
66 CTAATCCAGAAAAGAATGTGGATTAGTATGACTA-TTCATGTTTGTCTTATTTAAGAGACGAACT
*
3657590 TTGATTCTATC-AAAACGGTGGAAAGATAA
130 TTGATTCTATCAAAAATGGTGGAAAGA-AA
* * * ** * *
3657619 -CCTTTTCCTGCAACACCAAAGCATCAATGTCGTGTATCC-TAACA-AAGGGAATGTGTTCT-TA
1 GCC-TTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAA--GAATATGTT-TATG
* ** * ** * * * * * * *
3657680 GTTCCAAATCTTGAAAACAATGTACACT-GT-TG-CGAGAATCGTTGCTTGTCATATTTAAGTGA
62 GTTCCTAATCCAGAAAAGAATGTGGATTAGTATGAC--TATTC-ATGTTTGTCTTATTTAAGAGA
* * * *** * *
3657742 TGAATTTTGATTTTAAGGAAAATACG-GCAAAGAAAA
124 CGAACTTTGATTCTATCAAAAAT-GGTGGAAAG-AAA
* * ** * * * * * * * *
3657778 G-ATTTCCATGCAAAAGAAAATCATCTATATCATTTATCCTAATCATG-AGAATGTGTTTATAGT
1 GCCTTT-CTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGA-GAAGAATATGTTTATGGT
* * ** * * * ** *
3657841 TCTTAATCACA-AAATGAATGAAGATCATTACT-AC-ATTCCTTGTTTGTCTCGTTTGAG-GCAC
64 TCCTAATC-CAGAAAAGAATGTGGATTAGTA-TGACTATT-CATGTTTGTCTTATTTAAGAG-AC
** *
3657902 GAACTTACACTT-TA-CAAAAATTGGTGGGAAGAAA
125 GAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAA
* * * * *
3657936 GCCTTTGTTGCAAAACCAAAGCGTCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGC
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGTTC
* *
3658001 CTAATCCAGAAAAGAATGTGGATTAGTATGACTATTCATATTTGTCTTATTTAAGAGACAAACTT
66 CTAATCCAGAAAAGAATGTGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACGAACTT
3658066 TGATTCTATCAAAAATGGTGGAAAGAAAA
131 TGATTCTATCAAAAATGGTGGAAAG-AAA
* * * * * * ** **
3658095 GCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCT-TGGTT
1 GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTT-TATGGTT
* ** * * * * * * * * *
3658159 CCAAATCTTGAAAATAATGGGGATTATTACGAGTA-TCGATGTTTGTCATATTTAAGGGATGAAT
65 CCTAATCCAGAAAAGAATGTGGATTAGTATGACTATTC-ATGTTTGTCTTATTTAAGAGACGAAC
3658223 TTTGATT
129 TTTGATT
3658230 TTAAGAAAAA
Statistics
Matches: 2415, Mismatches: 823, Indels: 458
0.65 0.22 0.12
Matches are distributed among these distances:
155 3 0.00
156 42 0.02
157 165 0.07
158 954 0.40
159 960 0.40
160 102 0.04
161 167 0.07
162 14 0.01
163 8 0.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (158 bp):
GCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAATATGTTTATGGTTC
CTAATCCAGAAAAGAATGTGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACGAACTT
TGATTCTATCAAAAATGGTGGAAAGAAA
Found at i:3663460 original size:42 final size:42
Alignment explanation
Indices: 3663405--3663523 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
3663395 TTCTTCTCTC
* *
3663405 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
3663447 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
3663489 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
3663524 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:3663464 original size:12 final size:11
Alignment explanation
Indices: 3663438--3663513 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
3663428 TCTATTATCT
*
3663438 CTCCTGTCTCTC
1 CTCCTATCTC-C
3663450 CTCCTATCATCC
1 CTCCTATC-TCC
3663462 CTCCTATCT--
1 CTCCTATCTCC
*
3663471 CTACTATCT--
1 CTCCTATCTCC
*
3663480 CTCCTGTCTCTC
1 CTCCTATCTC-C
3663492 CTCCTATCATCC
1 CTCCTATC-TCC
*
3663504 CTCCTCTCTC
1 CTCCTATCTC
3663514 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:3663465 original size:24 final size:24
Alignment explanation
Indices: 3663429--3663514 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
3663419 CCTCCTCTCT
* *
3663429 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
3663453 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
3663474 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
3663495 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
3663515 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:3663489 original size:18 final size:18
Alignment explanation
Indices: 3663420--3663490 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
3663410 CCTGTCATCC
* *
3663420 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
3663438 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
3663460 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
3663480 CTCCTGTCTCT
1 CTCCTGTCTCT
3663491 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:3664657 original size:20 final size:20
Alignment explanation
Indices: 3664634--3664706 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
3664624 ACAATTCAAA
*
3664634 GTATCGATACATGTTGTAAT
1 GTATCGATACATGTTGAAAT
***
3664654 GTATCGATACATGAAAAAAAT
1 GTATCGATACATG-TTGAAAT
*
3664675 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGAAAT
3664695 GTATCGATACAT
1 GTATCGATACAT
3664707 AAAAAGGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (20 bp):
GTATCGATACATGTTGAAAT
Found at i:3664677 original size:21 final size:21
Alignment explanation
Indices: 3664651--3664727 Score: 86
Period size: 21 Copynumber: 3.7 Consensus size: 21
3664641 TACATGTTGT
3664651 AATGTATCGATACATGAAAAA
1 AATGTATCGATACATGAAAAA
****
3664672 AATGTATCGATACATG-TTGC
1 AATGTATCGATACATGAAAAA
3664692 AATGTATCGATACAT-AAAAA
1 AATGTATCGATACATGAAAAA
*
3664712 GGATGTATCGATACAT
1 -AATGTATCGATACAT
3664728 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAA
Found at i:3664685 original size:41 final size:41
Alignment explanation
Indices: 3664634--3664727 Score: 154
Period size: 41 Copynumber: 2.3 Consensus size: 41
3664624 ACAATTCAAA
*
3664634 GTATCGATACATGTTGTAATGTATCGATACATGAAAAA-AAT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAGAAT
*
3664675 GTATCGATACATGTTGCAATGTATCGATACATAAAAAGGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAGAAT
3664716 GTATCGATACAT
1 GTATCGATACAT
3664728 TTCTTGGCAG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
40 5 0.10
41 45 0.90
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAGAAT
Found at i:3664784 original size:13 final size:13
Alignment explanation
Indices: 3664766--3664791 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3664756 TACAGAAAGT
3664766 ATGTATCGATACA
1 ATGTATCGATACA
3664779 ATGTATCGATACA
1 ATGTATCGATACA
3664792 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3664789 original size:32 final size:33
Alignment explanation
Indices: 3664748--3664811 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
3664738 TAGCCAAACT
* **
3664748 TGTATCGATACAGAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
3664780 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
3664812 TTGGCTTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:3668873 original size:15 final size:15
Alignment explanation
Indices: 3668853--3668883 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3668843 TAAAAATGTC
*
3668853 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
3668868 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
3668883 C
1 C
3668884 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:3670980 original size:13 final size:13
Alignment explanation
Indices: 3670962--3670987 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3670952 ACATTTTTCC
3670962 TTGTATCGATACA
1 TTGTATCGATACA
3670975 TTGTATCGATACA
1 TTGTATCGATACA
3670988 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3672882 original size:48 final size:48
Alignment explanation
Indices: 3672828--3672923 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
3672818 GGGGAGATAA
3672828 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
1 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
3672876 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
1 AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
3672924 CGTAAAATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.38, C:0.08, G:0.29, T:0.25
Consensus pattern (48 bp):
AGGAGAGAATGCGTGAATTACCTTATTAAGGGGGAGAATGTACAAATT
Found at i:3673498 original size:20 final size:20
Alignment explanation
Indices: 3673475--3673547 Score: 92
Period size: 20 Copynumber: 3.6 Consensus size: 20
3673465 ACAATTCAAA
*
3673475 GTATCGATACATGTTGTAAT
1 GTATCGATACATGTTGAAAT
***
3673495 GTATCGATACATGAAAAAAAT
1 GTATCGATACATG-TTGAAAT
*
3673516 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGAAAT
3673536 GTATCGATACAT
1 GTATCGATACAT
3673548 AAAAAGGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (20 bp):
GTATCGATACATGTTGAAAT
Found at i:3673518 original size:21 final size:21
Alignment explanation
Indices: 3673492--3673568 Score: 86
Period size: 21 Copynumber: 3.7 Consensus size: 21
3673482 TACATGTTGT
3673492 AATGTATCGATACATGAAAAA
1 AATGTATCGATACATGAAAAA
****
3673513 AATGTATCGATACATG-TTGC
1 AATGTATCGATACATGAAAAA
3673533 AATGTATCGATACAT-AAAAA
1 AATGTATCGATACATGAAAAA
*
3673553 GGATGTATCGATACAT
1 -AATGTATCGATACAT
3673569 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAA
Found at i:3673526 original size:41 final size:41
Alignment explanation
Indices: 3673475--3673568 Score: 154
Period size: 41 Copynumber: 2.3 Consensus size: 41
3673465 ACAATTCAAA
*
3673475 GTATCGATACATGTTGTAATGTATCGATACATGAAAAA-AAT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAGAAT
*
3673516 GTATCGATACATGTTGCAATGTATCGATACATAAAAAGGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAGAAT
3673557 GTATCGATACAT
1 GTATCGATACAT
3673569 TTCTTGGCAG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
40 5 0.10
41 45 0.90
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAGAAT
Found at i:3673625 original size:13 final size:13
Alignment explanation
Indices: 3673607--3673632 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3673597 TACAGAAAGT
3673607 ATGTATCGATACA
1 ATGTATCGATACA
3673620 ATGTATCGATACA
1 ATGTATCGATACA
3673633 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3673630 original size:32 final size:33
Alignment explanation
Indices: 3673589--3673652 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
3673579 TAGCCAAACT
* **
3673589 TGTATCGATACAGAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
3673621 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
3673653 TTGGCTTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:3675894 original size:159 final size:159
Alignment explanation
Indices: 3675184--3676838 Score: 655
Period size: 159 Copynumber: 10.4 Consensus size: 159
3675174 TTTTCATCAG
* ** * * * * * * *
3675184 AAACCAAATCATCAATATTGTGTATCTTTATGAGAAGACTATGTTTATGGTGCCTAACCCTGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTTCCTAATCTTGAAA
* * * * *
3675249 AGAATGGGGATTAGTATGACTACTT-ATTTTTGTCATATTTAAGAGACAAACTTTGATTCTATC-
66 ATAATGTGGATTAGTATGACTA-TTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCA
* * *
3675312 AAAACGGTGGAAAGATAACCTTTTCCTGCA
130 AAAACGGTGGAAAGAAAAGCTTTTCTTGCA
* * * ** * * *
3675342 ACACCAAAGCATCAATGTCGTGTATCCTAACAAAGG-GAATGTGTTCT-TAGTTCCAAATCTTGA
1 AAACCAAAGCATCAATATCATGTATCCTAA-TGAGGAGAATATGTT-TATGGTTCCTAATCTTGA
* ** * * * * * * * * * *
3675405 AAACAATGTACACT-GT-TG-CGAGAATCGTTGCTTGTCATATTTAAGTGATGAATTTTGATTTT
64 AAATAATGTGGATTAGTATGAC--TATTC-ATGTTTGTCTTATTTAAGAGACGAACTTTGATTCT
** * * * *
3675467 AAGGAAAATAC-G-GCAAAGAAAAGATTTCCATGCA
126 -ATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCA
** * * * * * * **
3675501 AAAGAAAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTATAGTTCTTAATC-ACAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTTCCTAATCTTGAAA
* * * * ** * * **
3675565 ATGAT-TGAAGATCATTACT-AC-ATTCCTTGTTTGTCTCGTTTGAG-GCACAAACTTACACTT-
66 ATAATGTG--GATTAGTA-TGACTATT-CATGTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTC
* * * *
3675625 TA-CAAAAATTGGTGGGAAG-AAAGCCTTTGTTGCA
125 TATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCA
* * ** * * * **
3675659 AAACCAAAGCGTCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCAGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTTCCTAATCTTGAAA
* * *
3675724 AGAATGTGGATTAGTATGACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
66 ATAATGTGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAA
* *
3675789 AAACGGTGGAAAGAAAGGCTTTTCTTGCG
131 AAACGGTGGAAAGAAAAGCTTTTCTTGCA
* * * * * *
3675818 ACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCT-TGGTTCCAAATCTTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATATGTT-TATGGTTCCTAATCTTGAA
* * * * * * * * * * **
3675882 AATAATGGGGATTATTACGAGTATTGATGTTTGTCATATTTAAGGGATGAATTTTGATTTTAAGA
65 AATAATGTGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCA
** * * *
3675947 AAAATAG-GGAAGAGAAAAGATTTCCATGCA
130 AAAACGGTGGAA-AGAAAAGCTTTTCTTGCA
** * * * * * * ***
3675977 AAAAAAAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTTCTTAAT-GACAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTTCCTAATCTTGAAA
* ** * * * * * *
3676041 ATGAAAGAAGATCATTACTAGA--ATTCATGTTTGTCTCATTTGAG-GCACGAAC-TT-ACTCTT
66 AT-AATGTGGATTAGTA-T-GACTATTCATGTTTGTCTTATTTAAGAG-ACGAACTTTGATTCTA
** * **
3676101 TACAAAAATTAGT-G--AGCAAAATGCCTTTCTTGTG
127 T-CAAAAA-CGGTGGAAAG-AAAA-GCTTTTCTTGCA
* ** * * * * * * *
3676135 AAACCAAATCATCAATATTGTGTATCTTTATGAGAAGACTATGTTTATGGTGCCTAACCCTGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTTCCTAATCTTGAAA
* * * * *
3676200 AGAATGGGGATTAGTATGACTACTT-ATTTTTGTCATATTTAAGAGACAAACTTTGATTCTATC-
66 ATAATGTGGATTAGTATGACTA-TTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCA
* * *
3676263 AAAACGGTGGAAAGATAACCTTTTCCTGCA
130 AAAACGGTGGAAAGAAAAGCTTTTCTTGCA
* * * ** * * *
3676293 ACACCAAAGCATCAATGTCCTGTATCCTAACAAAGG-GAATGTGTTCT-TAGTTCCAAATCTTGA
1 AAACCAAAGCATCAATATCATGTATCCTAA-TGAGGAGAATATGTT-TATGGTTCCTAATCTTGA
* ** * * * * * * * * * *
3676356 AAACAATGTACACT-GT-TG-CGAGAATCGTTGCTTGTCATATTTAAGTGATGAATTTTGATTTT
64 AAATAATGTGGATTAGTATGAC--TATTC-ATGTTTGTCTTATTTAAGAGACGAACTTTGATTCT
** * * * *
3676418 AAGGAAAATAC-G-GCAAAGAAAAGATTTCCATGCA
126 -ATCAAAA-ACGGTGGAAAGAAAAGCTTTTCTTGCA
** * * * * * * * **
3676452 AAAGAAAATCATCAATATCATTTATCCTAATCATGAGAATGTGTTTATAGTTCTTAATC-ACAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTTCCTAATCTTGAAA
** * * * ** * **
3676516 ATGAATGAAGATCATTACT-AC-ATTCCTTGTTTGTCTCGTTTGAG-GCACGAACTTACACTT-T
66 AT-AATGTGGATTAGTA-TGACTATT-CATGTTTGTCTTATTTAAGAG-ACGAACTTTGA-TTCT
* * * *
3676577 A-CAAAAATTGGTGGGAAG-AAAGCCTTTGTTGCA
126 ATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGCA
* * ** * * * **
3676610 AAACCAAAGCGTCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCAGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTTCCTAATCTTGAAA
* * *
3676675 AGAATGTGGATTAGTATGACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
66 ATAATGTGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAA
*
3676740 AAACGGTGGAAAGAAAAGCTTTTCTTGCG
131 AAACGGTGGAAAGAAAAGCTTTTCTTGCA
* * * * * *
3676769 ACACCGAAGCATCAATGTCATGTATCCCAATGAGGGGAATATGTTCT-TGGTTCCAAATCTTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATATGTT-TATGGTTCCTAATCTTGAA
3676833 AATAAT
65 AATAAT
3676839 AAAAGGAAAA
Statistics
Matches: 1057, Mismatches: 357, Indels: 165
0.67 0.23 0.10
Matches are distributed among these distances:
155 2 0.00
156 12 0.01
157 31 0.03
158 478 0.45
159 497 0.47
160 27 0.03
161 6 0.01
162 4 0.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (159 bp):
AAACCAAAGCATCAATATCATGTATCCTAATGAGGAGAATATGTTTATGGTTCCTAATCTTGAAA
ATAATGTGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTCTATCAA
AAACGGTGGAAAGAAAAGCTTTTCTTGCA
Found at i:3676520 original size:475 final size:476
Alignment explanation
Indices: 3675184--3676834 Score: 2512
Period size: 475 Copynumber: 3.5 Consensus size: 476
3675174 TTTTCATCAG
* * *
3675184 AAACCAAATCATCAATATTGTGTAT-CTTTATGAGAAGACTATGTTTATGGTGCCTAACCCTGAA
1 AAACCAAAGCATCAATATCGTGTATCCTTT-TGAGAAGACTATGTTTATGGTGCCTAACCCAGAA
*
3675248 AAGAATGGGGATTAGTATGACTACTT-ATTTTTGTCATATTTAAGAGACAAACTTTGATTCTATC
65 AAGAATGGGGATTAGTATGACTA-TTCATATTTGTCATATTTAAGAGACAAACTTTGATTCTATC
* *
3675312 -AAAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGCATCAATGTCGTGTATCCTAACAAA
129 AAAAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGCATCAATGTCATGTATCCCAACAAA
*
3675376 GGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAATGTACACTGTTGCGAGAATCGTTGCTTGTC
194 GGGAATATGTTCTTAGTTCCAAATCTTGAAAACAATGTACACTGTTGCGAGAATCGTTGCTTGTC
3675441 ATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGA
259 ATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGA
*
3675506 AAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGATT
324 AAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAAT
*
3675571 GAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCACAAACTTACACTTTACAAAAATTG
389 GAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCACGAACTTACACTTTACAAAAATTG
3675636 GTGGGAAGAAAGCCTTTGTTGCA
454 GTGGGAAGAAAGCCTTTGTTGCA
* *
3675659 AAACCAAAGCGTCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCAGAAA
1 AAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAACCCAGAAA
* *
3675724 AGAATGTGGATTAGTATGACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
66 AGAATGGGGATTAGTATGACTATTCATATTTGTCATATTTAAGAGACAAACTTTGATTCTATCAA
* * * * ** *
3675789 AAACGGTGGAAAGA-AAGGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGG
131 AAACGGTGGAAAGATAA-CCTTTTCCTGCAACACCAAAGCATCAATGTCATGTATCCCAACAAAG
* * *** * * * * * * *
3675853 GGAATATGTTCTTGGTTCCAAATCTTGAAAATAATGGGGATTATTACGAGTATTGATGTTTGTCA
195 GGAATATGTTCTTAGTTCCAAATCTTGAAAACAATGTACACTGTTGCGAGAATCGTTGCTTGTCA
* * * *
3675918 TATTTAAGGGATGAATTTTGATTTTAAGAAAAATA-GGGAAGAGAAAAGATTTCCATGCAAAAAA
260 TATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAA-AGAAAAGATTTCCATGCAAAAGA
* * * * *
3675982 AAATCGTCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTTCTTAATGACAAAATGAAA
324 AAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAAT
* * * *
3676047 GAAGATCATTACTAGAATT-CATGTTTGTCTCATTTGAGGCACGAACTTACTCTTTACAAAAATT
389 GAAGATCATTACTA-CATTCCTTGTTTGTCTCGTTTGAGGCACGAACTTACACTTTACAAAAATT
* * * * **
3676111 AGTGAGCAA-AATGCCTTTCTTGTG
453 GGTG-GGAAGAAAGCCTTTGTTGCA
* * *
3676135 AAACCAAATCATCAATATTGTGTAT-CTTTATGAGAAGACTATGTTTATGGTGCCTAACCCTGAA
1 AAACCAAAGCATCAATATCGTGTATCCTTT-TGAGAAGACTATGTTTATGGTGCCTAACCCAGAA
*
3676199 AAGAATGGGGATTAGTATGACTACTT-ATTTTTGTCATATTTAAGAGACAAACTTTGATTCTATC
65 AAGAATGGGGATTAGTATGACTA-TTCATATTTGTCATATTTAAGAGACAAACTTTGATTCTATC
* *
3676263 -AAAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGCATCAATGTCCTGTATCCTAACAAA
129 AAAAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGCATCAATGTCATGTATCCCAACAAA
*
3676327 GGGAATGTGTTCTTAGTTCCAAATCTTGAAAACAATGTACACTGTTGCGAGAATCGTTGCTTGTC
194 GGGAATATGTTCTTAGTTCCAAATCTTGAAAACAATGTACACTGTTGCGAGAATCGTTGCTTGTC
3676392 ATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGA
259 ATATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGA
*
3676457 AAATCATCAATATCATTTATCCTAATCATGAGAATGTGTTTATAGTTCTTAATCACAAAATGAAT
324 AAATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAAT
3676522 GAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCACGAACTTACACTTTACAAAAATTG
389 GAAGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCACGAACTTACACTTTACAAAAATTG
3676587 GTGGGAAGAAAGCCTTTGTTGCA
454 GTGGGAAGAAAGCCTTTGTTGCA
* *
3676610 AAACCAAAGCGTCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCAGAAA
1 AAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAACCCAGAAA
* *
3676675 AGAATGTGGATTAGTATGACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
66 AGAATGGGGATTAGTATGACTATTCATATTTGTCATATTTAAGAGACAAACTTTGATTCTATCAA
* * * * * ** *
3676740 AAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCGAAGCATCAATGTCATGTATCCCAATGAGGG
131 AAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGCATCAATGTCATGTATCCCAACAAAGG
*
3676805 GAATATGTTCTTGGTTCCAAATCTTGAAAA
196 GAATATGTTCTTAGTTCCAAATCTTGAAAA
3676835 TAATAAAAGG
Statistics
Matches: 1039, Mismatches: 121, Indels: 31
0.87 0.10 0.03
Matches are distributed among these distances:
474 10 0.01
475 523 0.50
476 498 0.48
477 8 0.01
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (476 bp):
AAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAACCCAGAAA
AGAATGGGGATTAGTATGACTATTCATATTTGTCATATTTAAGAGACAAACTTTGATTCTATCAA
AAACGGTGGAAAGATAACCTTTTCCTGCAACACCAAAGCATCAATGTCATGTATCCCAACAAAGG
GAATATGTTCTTAGTTCCAAATCTTGAAAACAATGTACACTGTTGCGAGAATCGTTGCTTGTCAT
ATTTAAGTGATGAATTTTGATTTTAAGGAAAATACGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ATCATCAATATCATTTATCCTAATCAGGAGAATGTGTTTATAGTTCTTAATCACAAAATGAATGA
AGATCATTACTACATTCCTTGTTTGTCTCGTTTGAGGCACGAACTTACACTTTACAAAAATTGGT
GGGAAGAAAGCCTTTGTTGCA
Found at i:3681489 original size:25 final size:25
Alignment explanation
Indices: 3681461--3681508 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
3681451 AGGGGGAAAA
*
3681461 TTTGTTAAGGGAGAGTATTAAATGT
1 TTTGTTAAGGGAGAGTACTAAATGT
*
3681486 TTTGTTAAGGGGGAGTACTAAAT
1 TTTGTTAAGGGAGAGTACTAAAT
3681509 TGAAATTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.02, G:0.29, T:0.38
Consensus pattern (25 bp):
TTTGTTAAGGGAGAGTACTAAATGT
Found at i:3682163 original size:20 final size:20
Alignment explanation
Indices: 3682140--3682237 Score: 80
Period size: 20 Copynumber: 5.6 Consensus size: 20
3682130 ACAGCCAGAT
3682140 GTATCGATACATATTACTTA
1 GTATCGATACATATTACTTA
3682160 GTATCGATAC-----A-TTA
1 GTATCGATACATATTACTTA
*
3682174 -TATCGATACATATTGCTTA
1 GTATCGATACATATTACTTA
3682193 GTATCGATAC-----A-TTA
1 GTATCGATACATATTACTTA
*
3682207 -TATCGATACATATTGCTTA
1 GTATCGATACATATTACTTA
3682226 GTATCGATACAT
1 GTATCGATACAT
3682238 TATATCGATA
Statistics
Matches: 61, Mismatches: 3, Indels: 28
0.66 0.03 0.30
Matches are distributed among these distances:
13 18 0.30
14 6 0.10
15 1 0.02
19 6 0.10
20 30 0.49
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (20 bp):
GTATCGATACATATTACTTA
Found at i:3682179 original size:13 final size:13
Alignment explanation
Indices: 3682161--3682247 Score: 58
Period size: 13 Copynumber: 7.6 Consensus size: 13
3682151 TATTACTTAG
3682161 TATCGATACATTA
1 TATCGATACATTA
3682174 TATCGATACA-TA
1 TATCGATACATTA
3682186 T-T-G---C-TTA
1 TATCGATACATTA
3682193 GTATCGATACATTA
1 -TATCGATACATTA
3682207 TATCGATACA-TA
1 TATCGATACATTA
3682219 T-T-G---C-TTA
1 TATCGATACATTA
3682226 GTATCGATACATTA
1 -TATCGATACATTA
3682240 TATCGATA
1 TATCGATA
3682248 TGTGTTCTTA
Statistics
Matches: 58, Mismatches: 0, Indels: 32
0.64 0.00 0.36
Matches are distributed among these distances:
7 6 0.10
8 2 0.03
9 2 0.03
10 4 0.07
11 2 0.03
12 6 0.10
13 30 0.52
14 6 0.10
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.39
Consensus pattern (13 bp):
TATCGATACATTA
Found at i:3682183 original size:33 final size:33
Alignment explanation
Indices: 3682141--3682269 Score: 206
Period size: 33 Copynumber: 3.9 Consensus size: 33
3682131 CAGCCAGATG
*
3682141 TATCGATACATATTACTTAGTATCGATACATTA
1 TATCGATACATATTGCTTAGTATCGATACATTA
3682174 TATCGATACATATTGCTTAGTATCGATACATTA
1 TATCGATACATATTGCTTAGTATCGATACATTA
3682207 TATCGATACATATTGCTTAGTATCGATACATTA
1 TATCGATACATATTGCTTAGTATCGATACATTA
** * *
3682240 TATCGATATGTGTT-CTTAGTTTCGATACAT
1 TATCGATACATATTGCTTAGTATCGATACAT
3682270 ATTGAATTAT
Statistics
Matches: 91, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
32 15 0.16
33 76 0.84
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (33 bp):
TATCGATACATATTGCTTAGTATCGATACATTA
Found at i:3683480 original size:159 final size:157
Alignment explanation
Indices: 3683185--3685856 Score: 683
Period size: 159 Copynumber: 17.0 Consensus size: 157
3683175 CTAGAATTTG
* * * * * * *
3683185 TGTTTGTCTAATTTGAG-GCACAAACTTAGATTT-TACAAAAATTGGAGGGAAGAAAGCC-TTTC
1 TGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTATA-AAAAA-CGGTGGAAAGAAAACCTTTTC
* * * * * * *
3683247 TTGCGAAACCAAAGCATCAATATCGTGTACCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
63 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATATGTTTATGGTGCCCAATCT
* * * * *
3683312 TGAGAAGAATGGGGATTAGTGTGACAATTTA
127 TGAAAAGAATGGAGATTAGTATGAGAATTCA
3683343 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGTGGAAAGAAAACCTTTTCTT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATT-TATAAAAAACGGTGGAAAGAAAACCTTTTCTT
* * * *
3683408 GTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTCT-TGGTTCCCAATCTT
65 GCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATATGTT-TATGGTGCCCAATCTT
*
3683472 GAAAAGAATGGAGACTA-TGATGAGAA-TCGA
128 GAAAAGAATGGAGATTAGT-ATGAGAATTC-A
** * * * *** * * * * **
3683502 TACTTAT-TATATTTAGGGGGTGAATTTTAATTT-TAAGGAAAATAGG-GCAAAGAAAAGATTTT
1 TGTTTGTCT-TATTTAAGAGACAAACTTTGATTTATAA--AAAA-CGGTGGAAAGAAAACCTTTT
* ** * * * * * * *
3683564 CATGC-AAAGAAAAATCATTACTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
62 CTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGG-GAATATGTTTATGGTGCCCAAT
** * * * *
3683628 C-ACAAAATGAATGAAGATCATTACT-AGAATCCA
125 CTTGAAAA-GAATGGAGATTAGTA-TGAGAATTCA
* * * ** * *
3683661 TGTTTGTCTCATTT--GAGCCAAGAACTTAGACTTTATAAAAATTGGTGGGAAGAAAGCC-TTTC
1 TGTTTGTCTTATTTAAGAGAC-A-AACTTTGA-TTTATAAAAAACGGTGGAAAGAAAACCTTTTC
* * * * * * *
3683723 TTGCGAAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCAAATCC
63 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATATGTTTATGGTGCCCAATCT
* * **
3683788 TAAAAAGAATGGGGATTAGTATGACTATTCA
127 TGAAAAGAATGGAGATTAGTATGAGAATTCA
* *
3683819 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAAAAACGTTGGAAAGAAAACCTTTTCTT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATT-TATAAAAAACGGTGGAAAGAAAACCTTTTCTT
* * ** * * *
3683884 GCGAGACCAACGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTCT-TAGTTCCCAATCTT
65 GCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATATGTT-TATGGTGCCCAATCTT
* * * * *
3683948 GAAAAGAGTGAAGAAT-GTTAGGAGAATTGA
128 GAAAAGAATGGAGATTAG-TATGAGAATTCA
* * ** * * * * **
3683978 TGCTTGT-TGTATTTAAGGGATGAATTTTGATTT-TACGAAAAA--TTAGGCAACGAATAGATTT
1 TGTTTGTCT-TATTTAAGAGACAAACTTTGATTTATA--AAAAACGGT-GG-AAAGAAAACCTTT
* * * ** * * * *
3684039 CCAT-CCAAATGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAA
61 TCTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGG-GAATATGTTTATGGTGCCCAA
** ** * * **
3684103 TC-ACAAAATGAATTAAGATCATTACAAGAA-TCTA
124 TCTTGAAAA-GAATGGAGATTAGTATGAGAATTC-A
* * * * * * ** * * **
3684137 GGTTTGTCTCATTT--GAGGCAAGAACTTAGACATTACAAAAATTGGGGGGAAGAATGCC-TTTC
1 TGTTTGTCTTATTTAAGAGAC-A-AACTTTGA-TTTATAAAAAACGGTGGAAAGAAAACCTTTTC
* * ** * ** * *
3684199 TTTCGAAACCAAAGCGTCAATATTGTGTATCATTTTGAGAAGACTATGTTTATGGT-CCCTAATC
63 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATATGTTTATGGTGCCC-AATC
* **
3684263 TTAAAAAGAATTGG-GATTAGTATGACTATTCA
126 TTGAAAAGAA-TGGAGATTAGTATGAGAATTCA
* *
3684295 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAATCGGTGGAAAGATAACCTTTTCTT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATT-TATAAAAAACGGTGGAAAGAAAACCTTTTCTT
* * * * * *
3684360 GTGACACCAAAGCATCAATGTCATGTATCCTAACGAAGGGAATGTGTTCTA-GGTTCCCAATCTT
65 GCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATATGTT-TATGGTGCCCAATCTT
*** * *
3684424 GAAAAGAGCAGAGACT-GT-TGCGAGAATTGA
128 GAAAAGAATGGAGATTAGTAT--GAGAATTCA
* * * ** * * *
3684454 TGCTTATCTTTTTTAAGAGATGAACTTTGA--T-T--AAAA-----GAAA-AGAA---TTCCATG
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATTTATAAAAAACGGTGGAAAGAAAACCTTTTCTTG
* ** * * * * * ** * * **
3684505 CTAAAAAAAATCATCAATATTATTTATCCTAATGA-GGAAAATGTGGTACAGTGTCTAATC-ACA
66 CGAAACCAAAGCATCAATATCATGTATCCTAATGAGGGAATATGT-TTATGGTGCCCAATCTTGA
* ** *
3684568 AAATGAATGAAGATTTTTACT-AGAATCCA
130 AAA-GAATGGAGATTAGTA-TGAGAATTCA
* * * * * ** ** *
3684597 TATTAGTCTTATTT--GAGGCTTGACCTCGGATTT-TACAAAAATTAGTGGGAAA-AAAGCC-TT
1 TGTTTGTCTTATTTAAGAGAC--AAACTTTGATTTATA-AAAAA-CGGT-GGAAAGAAAACCTTT
* * ** * ** *
3684657 CCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTTTGAGGAGACTACATTTATGGTGCCTAAT
61 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATATGTTTATGGTGCCCAAT
* * * **
3684722 CTTGAGAAGAATGGGGATTAGTGTGACTATTCA
125 CTTGAAAAGAATGGAGATTAGTATGAGAATTCA
* * * ** * *
3684755 TGTTTCTCTTATTTAGGA-AGTAAACTTTGATTCTACCAAAAACGGTGGAAAAAAAACCTTTTGT
1 TGTTTGTCTTATTTAAGAGA-CAAACTTTGATT-TATAAAAAACGGTGGAAAGAAAACCTTTTCT
* * * * * * * *
3684819 TGCGACACCAGAGCTTCAATGTCATGTATCCTAATGAAAGGAATGTGTTCT-TGGTTCCAAATCT
64 TGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATATGTT-TATGGTGCCCAATCT
* * *
3684883 TGAAAA-AAGTGGAGACTATTACGAGAA-TCAA
127 TGAAAAGAA-TGGAGATTAGTATGAGAATTC-A
* * * * **
3684914 TGCTTGCCTTTTTTAAG-G-CATGAACTTTGATTT-TAAGGAAAA--TTAGGCAAAGAAAAGATT
1 TGTTTGTCTTATTTAAGAGACA--AACTTTGATTTATAA--AAAACGGT-GG-AAAGAAAACCTT
* * * ** * * * * * * *
3684974 TCCATGCCAAAGAAAATCATCAATATTATTTATCCTAATTAGAAGAATATGTTTATTGTGCCTAA
60 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATATGTTTATGGTGCCCAA
** * ** * * *
3685039 TC-ACAAAATGAATGAAGACCA-T-TGGAAAAATCCG
124 TCTTGAAAA-GAATGGAGATTAGTAT-G-AGAATTCA
* * ** * * * **
3685073 TGTTTGCCTCA--TCGGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA-AAAACC-TTT
1 TGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTTATAAAAAACGGT-GGAAAGAAAACCTTTT
* ** * * * *
3685134 CTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGGAGACTA-GATTTATGGTGCCTAAT
62 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATATG-TTTATGGTGCCCAAT
* * * * **
3685198 CTTGAAAAGAATGGGGATTATTGTAACTATTCA
125 CTTGAAAAGAATGGAGATTAGTATGAGAATTCA
** ** * * *
3685231 TGTTTCCCTTATTTTGGAGGCAAACTTTGATTCTAATCAAAAGCGGTGGAAAGAAAACCTTTTCT
1 TGTTTGTCTTATTTAAGAGACAAACTTTGATT-T-ATAAAAAACGGTGGAAAGAAAACCTTTTCT
* * * * *
3685296 TGC-AACACCAAAG---C-----CATGTATCCTATTGAAGGGAATGTGTTCATGGTTCCAAATCT
64 TGCGAA-ACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATATGTTTATGGTGCCCAATCT
*
3685352 TGAAAA-AAGTGGAGATT-GTTACGAGAA-TCAA
127 TGAAAAGAA-TGGAGATTAG-TATGAGAATTC-A
** * * * ** ** * * * * **
3685383 TACTTGCCTTTTTTAAGGGATGAACTTTTTTTTTTTAGGAAAATCAG-GCAAAGAAAAGATTTTC
1 TGTTTGTCTTATTTAAGAGACAAAC-TTTGATTTATA--AAAAACGGTGGAAAGAAAACCTTTTC
* * ** ** * * * * *
3685447 ATGCCAAAAAAAATTATCAATATCATTTATCCTAATTAGGAGAATGTGTTTATAGTGCCTAATC-
63 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATATGTTTATGGTGCCCAATCT
** * *
3685511 ACAAAATGAATGAAGATCA-T-TGCTAGAA-TCTA
127 TGAAAA-GAATGGAGATTAGTATG--AGAATTC-A
* * * * * ** * **
3685543 TGTTTGCCTCT-TCTGAG-GCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAACGCC-TTTC
1 TGTTTGTCT-TATTTAAGAG-ACAAACTTTGA-TTTATAAAAAACGGTGGAAAGAAAACCTTTTC
* ** * * * * *
3685605 TTGCGAAACCAAAGCGTCAATATTGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
63 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATATGTTTATGGTGCCCAATCT
**
3685670 TGAAAAGAATTGG-GATTAGTATGACTATTCA
127 TGAAAAGAA-TGGAGATTAGTATGAGAATTCA
* **** *
3685701 TGTTTGTCTTATTTAAGACG-CAAACTTTGATTCTATCAAAATTTTTGGAAAGAAAACCTTTTCC
1 TGTTTGTCTTATTTAAGA-GACAAACTTTGATT-TATAAAAAACGGTGGAAAGAAAACCTTTTCT
* * * * * * *
3685765 TACGATACCAAAGCATTAATCTCATGTATCCTAATGAATGGAATATGTTCT-TGGTTCCAAATCT
64 TGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATATGTT-TATGGTGCCCAATCT
* *
3685829 TGAAAAGAGTGGATATT-GTTATGAGAAT
127 TGAAAAGAATGGAGATTAG-TATGAGAAT
3685857 CAATGCTTGC
Statistics
Matches: 1764, Mismatches: 569, Indels: 361
0.65 0.21 0.13
Matches are distributed among these distances:
141 3 0.00
142 13 0.01
143 35 0.02
144 30 0.02
145 2 0.00
146 1 0.00
147 3 0.00
148 8 0.00
151 5 0.00
152 82 0.05
153 20 0.01
155 8 0.00
156 1 0.00
157 67 0.04
158 532 0.30
159 800 0.45
160 142 0.08
161 12 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (157 bp):
TGTTTGTCTTATTTAAGAGACAAACTTTGATTTATAAAAAACGGTGGAAAGAAAACCTTTTCTTG
CGAAACCAAAGCATCAATATCATGTATCCTAATGAGGGAATATGTTTATGGTGCCCAATCTTGAA
AAGAATGGAGATTAGTATGAGAATTCA
Found at i:3684004 original size:476 final size:474
Alignment explanation
Indices: 3683107--3686143 Score: 3730
Period size: 476 Copynumber: 6.4 Consensus size: 474
3683097 TGAGCTTACA
* * * *
3683107 AATATCATTTATCTTAACGAGGAGAATGTGTTTATAGTGCCTAATTACAAAATAAATGAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
*** * * *
3683172 TTACTAGAATTTGTGTTTGTCTAATTTGAGGCACA-AACTTAGATTTTACAAAAATTGGAGGGAA
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCA-AGAACTTAGACTTTACAAAAATTGGTGGGAA
* *
3683236 GAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTACCCTTATGAGAAGACTATGTTTATG
130 GAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
* * * *
3683301 GTGCCTAATCCTGAGAAGAATGGGGATTAGTGTGACAATTTATGTTTGTCTTATTTAAGAGACAA
195 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
* *
3683366 ACTTTGATTCTATAAAAAACGGTGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCA
260 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * *
3683431 TGTATCCTAATGAAGGGAATATGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATGATGAG
325 TGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAG
* * * * * *
3683496 AATCGATACTT-ATTATATTTAGGGGGTGAATTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGA
390 AATCAATGCTTGCTT-T-TTTAAGGGATGAATTTTGATTTTAAGGAAAATA-GGCAAAGAAAAGA
* *
3683560 TTTTCATG-CAAAGAAAAATCATT
452 TTTCCATGCCAAAG-AAAATCATC
*
3683583 ACTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* *
3683648 TTACTAGAATCCATGTTTGTCTCATTTGAGCCAAGAACTTAGACTTTATAAAAATTGGTGGGAAG
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAG
* *
3683713 AAAGCCTTTCTTGCGAAACCAAACCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
131 AAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* *
3683778 TGCCAAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
196 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * *
3683843 CTTTGATTCTATTAAAAACGTTGGAAAGAAAACCTTTTCTTGCGAGACCAACGCATCAACGTCAT
261 CTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * * *
3683908 GTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAGTGAAGAATGTTAGGAGA
326 GTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAGA
** * * * *
3683973 ATTGATGCTTG-TTGTATTTAAGGGATGAATTTTGATTTTACGAAAAATTAGGCAACGAATAGAT
391 ATCAATGCTTGCTT-T-TTTAAGGGATGAATTTTGATTTTAAGGAAAA-TAGGCAAAGAAAAGAT
3684037 TTCCAT-CCAAATGAAAATCATC
453 TTCCATGCCAAA-GAAAATCATC
* *
3684059 AATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATTAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * * *
3684124 TTACAAGAATCTAGGTTTGTCTCATTTGAGGCAAGAACTTAGACATTACAAAAATTGGGGGGAAG
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAG
* * * * *
3684189 AATGCCTTTCTTTCGAAACCAAAGCGTCAATATTGTGTATCATTTTGAGAAGACTATGTTTATGG
131 AAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * *
3684254 TCCCTAATCTTAAAAAGAATTGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
196 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* *
3684319 CTTTGATTCTAT-AAAAATCGGTGGAAAGATAACCTTTTCTTGTGACACCAAAGCATCAATGTCA
261 CTTTGATTCTATCAAAAA-CGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * ** *
3684383 TGTATCCTAACGAAGGGAATGTGTTCTAGGTTCCCAATCTTGAAAAGAGCAGAGACTGTTGCGAG
325 TGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAG
** * * * *
3684448 AATTGATGCTTATCTTTTTTAAGAGATGAACTTTGA---T--------TA---AAAGAAAAGAAT
390 AATCAATGCTT-GCTTTTTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGCAAAGAAAAGATT
* *
3684499 TCCATGCTAAAAAAAATCATC
454 TCCATGCCAAAGAAAATCATC
* * * * * **
3684520 AATATTATTTATCCTAATGAGGAAAATGTG-GTACAGTGTCTAATCACAAAATGAATGAAGATTT
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * ** * ** * * *
3684584 TTACTAGAATCCATATTAGTCTTATTTGAGGCTTGACCTCGGATTTTACAAAAATTAGTGGGAAA
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAG
* * * * **
3684649 AAAGCCTTCCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTTTGAGGAGACTACATTTATGG
131 AAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * * * *
3684714 TGCCTAATCTTGAGAAGAATGGGGATTAGTGTGACTATTCATGTTTCTCTTATTTAGGA-AGTAA
196 TGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA-CAA
* * * * *
3684778 ACTTTGATTCTACCAAAAACGGTGGAAAAAAAACCTTTTGTTGCGACACCAGAGCTTCAATGTCA
260 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * *
3684843 TGTATCCTAATGAAAGGAATGTGTTCTTGGTTCCAAATCTTGAAAAAAGTGGAGACTATTACGAG
325 TGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAG
* *
3684908 AATCAATGCTTGCCTTTTTTAAGGCATGAACTTTGATTTTAAGGAAAATTAGGCAAAGAAAAGAT
390 AATCAATGCTTG-CTTTTTTAAGGGATGAATTTTGATTTTAAGGAAAA-TAGGCAAAGAAAAGAT
3684973 TTCCATGCCAAAGAAAATCATC
453 TTCCATGCCAAAGAAAATCATC
* * * * * *
3684995 AATATTATTTATCCTAATTAGAAGAATATGTTTATTGTGCCTAATCACAAAATGAATGAAGACCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
*** * * * ** * *
3685060 TTGGAAAAATCCGTGTTTGCCTCATCGGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAA
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAG
* * * *
3685125 AAAACCTTTCTTGCAAAACCAAAGTGTCAATATCGTGTATCCTTATGAGGAGACTA-GATTTATG
131 AAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATG-TTTATG
* * * * ** ** *
3685189 GTGCCTAATCTTGAAAAGAATGGGGATTATTGTAACTATTCATGTTTCCCTTATTTTGGAGGCAA
195 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
* *
3685254 ACTTTGATTCTAATCAAAAGCGGTGGAAAGAAAACCTTTTCTTGCAACACCAAAG---C-----C
260 ACTTTGATTCT-ATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * *
3685311 ATGTATCCTATTGAAGGGAATGTGTTCATGGTTCCAAATCTTGAAAAAAGTGGAGATTGTTACGA
324 ATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGA
* ** *
3685376 GAATCAATACTTGCCTTTTTTAAGGGATGAACTTTTTTTTTTTAGGAAAATCAGGCAAAGAAAAG
389 GAATCAATGCTTG-CTTTTTTAAGGGATGAA-TTTTGATTTTAAGGAAAAT-AGGCAAAGAAAAG
* * *
3685441 ATTTTCATGCCAAAAAAAATTATC
451 ATTTCCATGCCAAAGAAAATCATC
*
3685465 AATATCATTTATCCTAATTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * *
3685530 TTGCTAGAATCTATGTTTGCCTC-TTCTGAGGCACA-AACTTAGACTTTACAAAAATTGGTGGGA
66 TTACTAGAATCCATGTTTGTCTCATT-TGAGGCA-AGAACTTAGACTTTACAAAAATTGGTGGGA
* *
3685593 AGAACGCCTTTCTTGCGAAACCAAAGCGTCAATATTGTGTATCCTTATGAGAAGACTATGTTTAT
129 AGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT
*
3685658 GGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGACG-C
194 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA-GAC
**** * * * * *
3685722 AAACTTTGATTCTATCAAAATTTTTGGAAAGAAAACCTTTTCCTACGATACCAAAGCATTAATCT
258 AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGT
* * * * *
3685787 CATGTATCCTAATGAATGGAATATGTTCTTGGTTCCAAATCTTGAAAAGAGTGGATATTGTTATG
323 CATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTGTTACG
** **
3685852 AGAATCAATGCTTGCCTTTTTTAAGGGATGAACCTTGATTTTAAGGAAAATCATTCAAAGAAAAG
388 AGAATCAATGCTTG-CTTTTTTAAGGGATGAATTTTGATTTTAAGGAAAAT-AGGCAAAGAAAAG
3685917 ATTTCCATGCCAAAGAAAATCATC
451 ATTTCCATGCCAAAGAAAATCATC
* *
3685941 AATATCTTTTATCCTAATTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
1 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
* * * ** * * * *
3686006 TTACTGGAATCCTTGTTTGCCTCATCGGAGGCATGAACTTGGACTTTATAAAAATTGGTGGGAAT
66 TTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAG
* * * **
3686071 AAAGCCTTTCTTGCGAAAGCAAAGCGTCAATATCGTGTACCCTTATGAGGAGACTACATTTATGG
131 AAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
3686136 TGCCTAAT
196 TGCCTAAT
3686144 ATTGAGGAGA
Statistics
Matches: 2221, Mismatches: 293, Indels: 94
0.85 0.11 0.04
Matches are distributed among these distances:
459 1 0.00
460 325 0.15
461 55 0.02
462 4 0.00
463 1 0.00
464 2 0.00
469 127 0.06
470 282 0.13
471 2 0.00
472 2 0.00
473 1 0.00
474 1 0.00
475 62 0.03
476 1223 0.55
477 131 0.06
478 2 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (474 bp):
AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCA
TTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAG
AAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
TGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
CTTTGATTCTATCAAAAACGGTGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATGTCAT
GTATCCTAATGAAGGGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAGTGGAGACTGTTACGAGA
ATCAATGCTTGCTTTTTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGCAAAGAAAAGATTTC
CATGCCAAAGAAAATCATC
Found at i:3686468 original size:71 final size:70
Alignment explanation
Indices: 3686368--3686502 Score: 182
Period size: 71 Copynumber: 1.9 Consensus size: 70
3686358 TGAACAGTAC
* * *
3686368 ATGTATCGAAAACCTTTTGTTTTTGCCTAGATATATCGACACATTTATCAATGTATGGATACATG
1 ATGTATCGAAAACATTTTGTTTTTACCTAGATATATCGACACATTTATCAATGTATCGATACATG
3686433 TATGA
66 TATGA
* * * *
3686438 ATGTATCG-ATACATTTTGTTTTTCTACCTAGATGTATCGATACATTTTTCAATGTATCGATACA
1 ATGTATCGAAAACATTTTG-TTTT-TACCTAGATATATCGACACATTTATCAATGTATCGATACA
3686502 T
64 T
3686503 CTAGTTAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
69 8 0.14
70 12 0.21
71 36 0.64
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (70 bp):
ATGTATCGAAAACATTTTGTTTTTACCTAGATATATCGACACATTTATCAATGTATCGATACATG
TATGA
Found at i:3687501 original size:20 final size:21
Alignment explanation
Indices: 3687476--3687530 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
3687466 GTATCGATAC
**
3687476 AATGTATCGATACATGACCA-
1 AATGTATCGATACATGAAAAG
*
3687496 AATGTATCGATACTTGAAAAG
1 AATGTATCGATACATGAAAAG
3687517 AATGTATCGATACA
1 AATGTATCGATACA
3687531 GGTCATTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 17 0.57
21 13 0.43
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAG
Found at i:3693349 original size:13 final size:13
Alignment explanation
Indices: 3693331--3693356 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3693321 CAATTTTTTG
3693331 TGTATCGATACAT
1 TGTATCGATACAT
3693344 TGTATCGATACAT
1 TGTATCGATACAT
3693357 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3695885 original size:13 final size:13
Alignment explanation
Indices: 3695867--3695905 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3695857 ATAATCACCC
*
3695867 TGTATCGATACAG
1 TGTATCGATACAA
3695880 TGTATCGATACAA
1 TGTATCGATACAA
3695893 TGTATCGATACAA
1 TGTATCGATACAA
3695906 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3695916 original size:20 final size:20
Alignment explanation
Indices: 3695891--3695929 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
3695881 GTATCGATAC
3695891 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
3695911 AATGTATCGATACATAGAA
1 AATGTATCGATACAAAGAA
3695930 TTTCCAGATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.23
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:3698004 original size:15 final size:15
Alignment explanation
Indices: 3697984--3698014 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3697974 ATTTCGTTTG
*
3697984 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
3697999 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
3698014 G
1 G
3698015 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:3699847 original size:21 final size:21
Alignment explanation
Indices: 3699818--3699862 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3699808 AAGTTTTCAT
*
3699818 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
3699838 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
3699860 TTT
1 TTT
3699863 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:3702092 original size:13 final size:13
Alignment explanation
Indices: 3702074--3702099 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3702064 CAATTTTTTG
3702074 TGTATCGATACAT
1 TGTATCGATACAT
3702087 TGTATCGATACAT
1 TGTATCGATACAT
3702100 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3703643 original size:19 final size:19
Alignment explanation
Indices: 3703619--3703672 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 19
3703609 CACACCCAGA
3703619 TGTATCGATACATGATC-AT
1 TGTATCGATACATGA-CAAT
3703638 TGTATCGATACATGGACAAT
1 TGTATCGATACAT-GACAAT
*
3703658 TGTATTGATACATGA
1 TGTATCGATACATGA
3703673 AACTAACAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (19 bp):
TGTATCGATACATGACAAT
Found at i:3703661 original size:20 final size:20
Alignment explanation
Indices: 3703619--3703671 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
3703609 CACACCCAGA
3703619 TGTATCGATACAT-GATCAT
1 TGTATCGATACATGGATCAT
3703638 TGTATCGATACATGGA-CAAT
1 TGTATCGATACATGGATC-AT
*
3703658 TGTATTGATACATG
1 TGTATCGATACATG
3703672 AAACTAACAG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATGGATCAT
Found at i:3703725 original size:20 final size:20
Alignment explanation
Indices: 3703700--3703765 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
3703690 CTACCACTGT
3703700 TTGTATCGATACATGGTACA
1 TTGTATCGATACATGGTACA
3703720 TTGTATCGATACA--G----
1 TTGTATCGATACATGGTACA
3703734 -TGTATCGATACATGGTACA
1 TTGTATCGATACATGGTACA
3703753 TTGTATCGATACA
1 TTGTATCGATACA
3703766 GTGTATCGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 12 0.31
15 1 0.03
18 1 0.03
20 25 0.64
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATGGTACA
Found at i:3703737 original size:13 final size:13
Alignment explanation
Indices: 3703716--3703778 Score: 66
Period size: 13 Copynumber: 5.3 Consensus size: 13
3703706 CGATACATGG
*
3703716 TACATTGTATCGA
1 TACAGTGTATCGA
3703729 TACAGTGTATCGA
1 TACAGTGTATCGA
3703742 TACA-TG----G-
1 TACAGTGTATCGA
*
3703749 TACATTGTATCGA
1 TACAGTGTATCGA
3703762 TACAGTGTATCGA
1 TACAGTGTATCGA
3703775 TACA
1 TACA
3703779 TTGCTTCTAA
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 4 0.10
8 3 0.07
12 3 0.07
13 32 0.76
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (13 bp):
TACAGTGTATCGA
Found at i:3703743 original size:33 final size:33
Alignment explanation
Indices: 3703701--3703779 Score: 158
Period size: 33 Copynumber: 2.4 Consensus size: 33
3703691 TACCACTGTT
3703701 TGTATCGATACATGGTACATTGTATCGATACAG
1 TGTATCGATACATGGTACATTGTATCGATACAG
3703734 TGTATCGATACATGGTACATTGTATCGATACAG
1 TGTATCGATACATGGTACATTGTATCGATACAG
3703767 TGTATCGATACAT
1 TGTATCGATACAT
3703780 TGCTTCTAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATGGTACATTGTATCGATACAG
Found at i:3707552 original size:15 final size:15
Alignment explanation
Indices: 3707528--3707563 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
3707518 ATTTTCATCC
*
3707528 TTTTGGATGTAAATG
1 TTTTGTATGTAAATG
3707543 TTTTGTATGTAAATG
1 TTTTGTATGTAAATG
3707558 TTTTGT
1 TTTTGT
3707564 TTTAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56
Consensus pattern (15 bp):
TTTTGTATGTAAATG
Found at i:3712384 original size:20 final size:19
Alignment explanation
Indices: 3712361--3712434 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 19
3712351 CACACCCAGA
* *
3712361 TGTATCGATACATTATGCTT
1 TGTATCGATACATGAT-CAT
3712381 TGTATCGATACATGATCAT
1 TGTATCGATACATGATCAT
3712400 TGTATCGATACATGGAT-AGT
1 TGTATCGATACAT-GATCA-T
3712420 TGTATCGATACATGA
1 TGTATCGATACATGA
3712435 AACTCGCAGT
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
19 18 0.36
20 32 0.64
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGATCAT
Found at i:3712580 original size:20 final size:20
Alignment explanation
Indices: 3712555--3712607 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
3712545 TTTAAATCAA
3712555 TGTATCGATACATTATGAAT
1 TGTATCGATACATTATGAAT
3712575 TGTATCGATACATTATGAAT
1 TGTATCGATACATTATGAAT
3712595 TGTATCGATACAT
1 TGTATCGATACAT
3712608 GGCTACAGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATTATGAAT
Found at i:3718082 original size:13 final size:13
Alignment explanation
Indices: 3718064--3718088 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3718054 AGAGTGTTTG
3718064 AAGAAAAAAAAAA
1 AAGAAAAAAAAAA
3718077 AAGAAAAAAAAA
1 AAGAAAAAAAAA
3718089 TTTATCCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
AAGAAAAAAAAAA
Found at i:3718193 original size:19 final size:18
Alignment explanation
Indices: 3718169--3718234 Score: 79
Period size: 19 Copynumber: 3.8 Consensus size: 18
3718159 TTCAACAATT
3718169 TGTATCGATACATAAGTTA
1 TGTATCGATACATAAG-TA
3718188 TGTATCGATAC---A--A
1 TGTATCGATACATAAGTA
3718201 TGTATCGATACATAAGTA
1 TGTATCGATACATAAGTA
3718219 TTGTATCGATACATAA
1 -TGTATCGATACATAA
3718235 TTAGCTACTG
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
13 12 0.29
16 2 0.05
18 1 0.02
19 26 0.63
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (18 bp):
TGTATCGATACATAAGTA
Found at i:3718205 original size:13 final size:13
Alignment explanation
Indices: 3718187--3718212 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3718177 TACATAAGTT
3718187 ATGTATCGATACA
1 ATGTATCGATACA
3718200 ATGTATCGATACA
1 ATGTATCGATACA
3718213 TAAGTATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3718206 original size:32 final size:32
Alignment explanation
Indices: 3718169--3718231 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
3718159 TTCAACAATT
3718169 TGTATCGATACATAAGT-TATGTATCGATACAA
1 TGTATCGATACATAAGTAT-TGTATCGATACAA
3718201 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
3718232 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 29 0.97
33 1 0.03
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:3718292 original size:13 final size:13
Alignment explanation
Indices: 3718274--3718299 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3718264 CATTTTTCTG
3718274 TGTATCGATACAT
1 TGTATCGATACAT
3718287 TGTATCGATACAT
1 TGTATCGATACAT
3718300 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3718296 original size:33 final size:33
Alignment explanation
Indices: 3718254--3718320 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3718244 GCCAAGGAAA
***
3718254 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
3718287 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
3718320 T
1 T
3718321 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:3720738 original size:51 final size:52
Alignment explanation
Indices: 3720656--3720779 Score: 162
Period size: 51 Copynumber: 2.4 Consensus size: 52
3720646 CAACTCTCCG
* * * *
3720656 CAATCAGGGATATTCCATCTCCGATTTTATTTTT-AAAACACTAA-TTTTCTA
1 CAATCGGGGATACTCCAACTCCGATTTTATTTTTAAAAACACAAATTTTTC-A
*
3720707 TAATCGGGGATACTCCAACTCCGATTTTATTTTTAAAAAAACACAAATTTTTCA
1 CAATCGGGGATACTCCAACTCCGATTTTATTTTT--AAAAACACAAATTTTTCA
3720761 CAATCGGGGATACTCCAAC
1 CAATCGGGGATACTCCAAC
3720780 CCCGTTAATC
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
51 30 0.48
54 28 0.44
55 5 0.08
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (52 bp):
CAATCGGGGATACTCCAACTCCGATTTTATTTTTAAAAACACAAATTTTTCA
Found at i:3720769 original size:54 final size:51
Alignment explanation
Indices: 3720656--3720779 Score: 160
Period size: 54 Copynumber: 2.4 Consensus size: 51
3720646 CAACTCTCCG
* * * *
3720656 CAATCAGGGATATTCCATCTCCGATTTTATTTTTAAAACACTAATTTTCTA
1 CAATCGGGGATACTCCAACTCCGATTTTATTTTTAAAACACAAATTTTCTA
*
3720707 TAATCGGGGATACTCCAACTCCGATTTTATTTTTAAAAAAACACAAATTTT-TCA
1 CAATCGGGGATACTCCAACTCCGATTTTATTTTT---AAAACACAAATTTTCT-A
3720761 CAATCGGGGATACTCCAAC
1 CAATCGGGGATACTCCAAC
3720780 CCCGTTAATC
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
51 30 0.48
53 1 0.02
54 32 0.51
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.35
Consensus pattern (51 bp):
CAATCGGGGATACTCCAACTCCGATTTTATTTTTAAAACACAAATTTTCTA
Found at i:3720797 original size:27 final size:28
Alignment explanation
Indices: 3720763--3720837 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 28
3720753 ATTTTTCACA
3720763 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
3720790 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
3720818 CGAGGGGATACTCCAACCCC
1 ATCGGGGATACTCCAACCCC
3720838 TGCTTTATTC
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.56
28 19 0.44
ACGTcount: A:0.24, C:0.35, G:0.20, T:0.21
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:3720974 original size:78 final size:79
Alignment explanation
Indices: 3720792--3720994 Score: 248
Period size: 78 Copynumber: 2.6 Consensus size: 79
3720782 CGTTAATCAT
* *
3720792 CGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCTGCTTTATTCTTAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCTGATTTATTCTTAAAATAT
* * *
3720857 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * **
3720871 TGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCCC-GATTT-TTTTTCTAATCA
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCTGATTTATTCTTAAAAT-A
3720934 TCGATTTCTCACAAC
65 TCGATTTCTCACAAC
* * * * *
3720949 CGGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACCCCAACCCC
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCC
3720995 GTTATTATCT
Statistics
Matches: 106, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
77 7 0.07
78 56 0.53
79 43 0.41
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCTGATTTATTCTTAAAATAT
CGATTTCTCACAAC
Found at i:3723551 original size:10 final size:10
Alignment explanation
Indices: 3723516--3723556 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
3723506 TCATCCAATC
* *
3723516 AAAAAATGAT
1 AAAAAAAGAA
*
3723526 AAAAAATGAA
1 AAAAAAAGAA
3723536 AAAAAAAGAA
1 AAAAAAAGAA
3723546 AAAAAAAGAA
1 AAAAAAAGAA
3723556 A
1 A
3723557 GCAAACATGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
10 29 1.00
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:3726004 original size:157 final size:155
Alignment explanation
Indices: 3725713--3726339 Score: 643
Period size: 157 Copynumber: 4.0 Consensus size: 155
3725703 TCTCTAGTTG
* * * *
3725713 TTTTAAGTCCTTTAGAGTTACCGAGATACTTTCACGTCGAAGGTATCCCTTAGGAGTATTTTCGT
1 TTTTAAGTCCTTTAGAGTTACCAAGATACTTTCACGTCGAAGGTATCCCCTAGGGGTATTTTCAT
* * * * *
3725778 AATTTTCTAGAATCGAGTGCTAAGTTATCACTGGGTCTGCTTTCATGCCGAATG-TGGGTATTTA
66 AATTTTCTAGAATCAAGTCCTAAGTTATCTC-GGGTCTGCTTTTATGTCGAA-GATGGGTATTTA
3725842 GGATAGGTTCATCCCTTTTAAAATCCT
129 GGATAGGTTCATCCCTTTTAAAATCCT
* * * ** * *
3725869 TTTTAAGTTCTTTAGGGTTACCAAGATACTTTCACGTCGAAGGTGTAGTCATAGGGGCATTTTCA
1 TTTTAAGTCCTTTAGAGTTACCAAGATACTTTCACGTCGAAGGTAT-CCCCTAGGGGTATTTTCA
* ** * *
3725934 TAATTTTTTAGAATCAAGTCCTAAGTTATCTTCTAGTCCGCTTTTATGTCGAAGATGGGTATTAA
65 TAATTTTCTAGAATCAAGTCCTAAGTTATC-TCGGGTCTGCTTTTATGTCGAAGATGGGTATTTA
* * * * *
3725999 AGATAGGTTTATCCCTTTTATAGTCAT
129 GGATAGGTTCATCCCTTTTAAAATCCT
* * ** * * * * *
3726026 TTTTAAGTCCTTTAGGGGTACCGGGATACTTTCACATCAAAGGTATCCCCTAAGGATATTTTGAT
1 TTTTAAGTCCTTTAGAGTTACCAAGATACTTTCACGTCGAAGGTATCCCCTAGGGGTATTTTCAT
* * *
3726091 AATTTTCTA-AAACAAAGTCCTAAGTTATCCTCGGGTCTG-TTTTATGTAGAAGGTGGGTATTTA
66 AATTTTCTAGAATC-AAGTCCTAAGTTAT-CTCGGGTCTGCTTTTATGTCGAAGATGGGTATTTA
*
3726154 GGATAGGTTTATCCCTTTTAAAATCCT
129 GGATAGGTTCATCCCTTTTAAAATCCT
** * * * *
3726181 TTTTTGGTCCTTTA-AATGTACTAGGATACTTTCACGTCGAAGGAATCCCCTAGGGGTATTTTCA
1 TTTTAAGTCCTTTAGAGT-TACCAAGATACTTTCACGTCGAAGGTATCCCCTAGGGGTATTTTCA
* * * * * * *
3726245 TAATTTTTTTAAAATCGAGTCCT-AGATTATCACCGGGTCTGTTTTTATGTTGAAGATAGGTATT
65 TAA-TTTTCTAGAATCAAGTCCTAAG-TTATC-TCGGGTCTGCTTTTATGTCGAAGATGGGTATT
* *
3726309 TAGGATAGGTTCACCCCTTTTATAATCCT
127 TAGGATAGGTTCATCCCTTTTAAAATCCT
3726338 TT
1 TT
3726340 AAGGGTTCTA
Statistics
Matches: 386, Mismatches: 74, Indels: 21
0.80 0.15 0.04
Matches are distributed among these distances:
155 103 0.27
156 107 0.28
157 175 0.45
158 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.39
Consensus pattern (155 bp):
TTTTAAGTCCTTTAGAGTTACCAAGATACTTTCACGTCGAAGGTATCCCCTAGGGGTATTTTCAT
AATTTTCTAGAATCAAGTCCTAAGTTATCTCGGGTCTGCTTTTATGTCGAAGATGGGTATTTAGG
ATAGGTTCATCCCTTTTAAAATCCT
Found at i:3726293 original size:312 final size:313
Alignment explanation
Indices: 3725713--3726332 Score: 752
Period size: 312 Copynumber: 2.0 Consensus size: 313
3725703 TCTCTAGTTG
* * * *
3725713 TTTTAAGTCCTTTAGAGTTACCGAGATACTTTCACGTCGAAGGTATCCCTTAGGAGTATTTTCGT
1 TTTTAAGTCCTTTAGAGGTACCGAGATACTTTCACATCAAAGGTATCCCTAAGGAGTATTTTCGT
* * * * *
3725778 AATTTTCTAGAATCGAGTGCTAAGTTATCACTGGGTCTGCTTTCATGCCGAATGTGGGTATTTAG
66 AATTTTCTAGAAACAAGTCCTAAGTTATCACTGGGTCTGCTTTCATGCAGAAGGTGGGTATTTAG
* *
3725843 GATAGGTTCATCCCTTTTAAAATCCTTTTTAAGTTCTTTAGGGTTACCAAGATACTTTCACGTCG
131 GATAGGTTCATCCCTTTTAAAATCCTTTTTAAGTCCTTTAAGGTTACCAAGATACTTTCACGTCG
** ** * ** *
3725908 AAGGTGTAGTCATAGGGGCATTTTCATAATTTTTTAGAATCAAGTCCTAAGTTATCTTCTAGTCC
196 AAGGAATACCCATAGGGGCATTTTCATAATTTTTTAAAATCAAGTCCTAAGTTATCACCGAGTCC
* * *
3725973 GCTTTTATGTCGAAGATGGGTATTAAAGATAGGTTTATCCCTTTTATAGTCAT
261 GCTTTTATGTCGAAGATAGGTATTAAAGATAGGTTCACCCCTTTTATAGTCAT
* *
3726026 TTTTAAGTCCTTTAGGGGTACCGGGATACTTTCACATCAAAGGTATCCCCTAAGGA-TATTTT-G
1 TTTTAAGTCCTTTAGAGGTACCGAGATACTTTCACATCAAAGGTAT-CCCTAAGGAGTATTTTCG
* *
3726089 ATAATTTTCTA-AAACAAAGTCCTAAGTTATC-CTCGGGTCTG-TTTTATGTAGAAGGTGGGTAT
65 -TAATTTTCTAGAAAC-AAGTCCTAAGTTATCACT-GGGTCTGCTTTCATGCAGAAGGTGGGTAT
* ** * * *
3726151 TTAGGATAGGTTTATCCCTTTTAAAATCCTTTTTTGGTCCTTTAA-ATGTACTAGGATACTTTCA
127 TTAGGATAGGTTCATCCCTTTTAAAATCCTTTTTAAGTCCTTTAAGGT-TACCAAGATACTTTCA
* * *
3726215 CGTCGAAGGAAT-CCCCTAGGGGTATTTTCATAATTTTTTTAAAATCGAGTCCT-AGATTATCAC
191 CGTCGAAGGAATACCCATAGGGGCATTTTCATAA-TTTTTTAAAATCAAGTCCTAAG-TTATCAC
* * * * * *
3726278 CGGGTCTGTTTTTATGTTGAAGATAGGTATTTAGGATAGGTTCACCCCTTTTATA
254 CGAGTCCGCTTTTATGTCGAAGATAGGTATTAAAGATAGGTTCACCCCTTTTATA
3726333 ATCCTTTAAG
Statistics
Matches: 259, Mismatches: 41, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
311 20 0.08
312 154 0.59
313 77 0.30
314 8 0.03
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (313 bp):
TTTTAAGTCCTTTAGAGGTACCGAGATACTTTCACATCAAAGGTATCCCTAAGGAGTATTTTCGT
AATTTTCTAGAAACAAGTCCTAAGTTATCACTGGGTCTGCTTTCATGCAGAAGGTGGGTATTTAG
GATAGGTTCATCCCTTTTAAAATCCTTTTTAAGTCCTTTAAGGTTACCAAGATACTTTCACGTCG
AAGGAATACCCATAGGGGCATTTTCATAATTTTTTAAAATCAAGTCCTAAGTTATCACCGAGTCC
GCTTTTATGTCGAAGATAGGTATTAAAGATAGGTTCACCCCTTTTATAGTCAT
Found at i:3729401 original size:8 final size:8
Alignment explanation
Indices: 3729384--3729427 Score: 70
Period size: 8 Copynumber: 5.4 Consensus size: 8
3729374 ATTTTCCTTG
3729384 TTTTTCTT
1 TTTTTCTT
*
3729392 TTTCTCTT
1 TTTTTCTT
3729400 TTTTTCTTT
1 TTTTTC-TT
3729409 TTTTTCTT
1 TTTTTCTT
3729417 TTTTTCTT
1 TTTTTCTT
3729425 TTT
1 TTT
3729428 CCATCTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
8 25 0.76
9 8 0.24
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTTTCTT
Found at i:3729403 original size:10 final size:9
Alignment explanation
Indices: 3729390--3729427 Score: 60
Period size: 9 Copynumber: 4.2 Consensus size: 9
3729380 CTTGTTTTTC
3729390 TTTTTCTCTT
1 TTTTTCT-TT
3729400 TTTTTCTTT
1 TTTTTCTTT
3729409 TTTTTC-TT
1 TTTTTCTTT
3729417 TTTTTCTTT
1 TTTTTCTTT
3729426 TT
1 TT
3729428 CCATCTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.30
9 12 0.44
10 7 0.26
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:3729410 original size:17 final size:17
Alignment explanation
Indices: 3729375--3729438 Score: 78
Period size: 17 Copynumber: 3.8 Consensus size: 17
3729365 AATGTAAAGA
3729375 TTTTC-CTTGTTTTTC-T
1 TTTTCTCTT-TTTTTCTT
3729391 TTTTCTCTTTTTTTCTT
1 TTTTCTCTTTTTTTCTT
*
3729408 TTTTTTCTTTTTTTCTT
1 TTTTCTCTTTTTTTCTT
*
3729425 TTTCCATCTTTTTT
1 TTTTC-TCTTTTTT
3729439 AGCTGAACTC
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
16 11 0.26
17 23 0.55
18 8 0.19
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTCTCTTTTTTTCTT
Found at i:3729412 original size:25 final size:25
Alignment explanation
Indices: 3729375--3729427 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
3729365 AATGTAAAGA
3729375 TTTTCCTTGTTTTTCTTTTTCTCTT
1 TTTTCCTTGTTTTTCTTTTTCTCTT
* * *
3729400 TTTTTCTTTTTTTTCTTTTTTTCTT
1 TTTTCCTTGTTTTTCTTTTTCTCTT
3729425 TTT
1 TTT
3729428 CCATCTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (25 bp):
TTTTCCTTGTTTTTCTTTTTCTCTT
Found at i:3729436 original size:25 final size:25
Alignment explanation
Indices: 3729375--3729438 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
3729365 AATGTAAAGA
3729375 TTTTCCT-TGTTTTTCTTTTTCTCTT
1 TTTTCCTCT-TTTTTCTTTTTCTCTT
* * *
3729400 TTTTTCTTTTTTTTCTTTTTTTC-T
1 TTTTCCTCTTTTTTCTTTTTCTCTT
3729424 TTTTCCATCTTTTTT
1 TTTTCC-TCTTTTTT
3729439 AGCTGAACTC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 6 0.18
25 26 0.79
26 1 0.03
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (25 bp):
TTTTCCTCTTTTTTCTTTTTCTCTT
Found at i:3729673 original size:20 final size:21
Alignment explanation
Indices: 3729650--3729696 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
3729640 TGTTGCTTGT
*
3729650 TTTCACTTGATGGTTTC-ACC
1 TTTCACTTGATGGTTGCTACC
** *
3729670 TTTCTGTTGTTGGTTGCTACC
1 TTTCACTTGATGGTTGCTACC
3729691 TTTCAC
1 TTTCAC
3729697 GTTGCAGCAT
Statistics
Matches: 20, Mismatches: 6, Indels: 1
0.74 0.22 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.11, C:0.23, G:0.17, T:0.49
Consensus pattern (21 bp):
TTTCACTTGATGGTTGCTACC
Found at i:3730627 original size:8 final size:9
Alignment explanation
Indices: 3730609--3730666 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 9
3730599 ATCATCATTT
3730609 TTTTGATTA
1 TTTTGATTA
3730618 TTTT-ATTA
1 TTTTGATTA
3730626 TTTT-ATTAA
1 TTTTGATT-A
*
3730635 TTTTGACTTT
1 TTTTGA-TTA
3730645 TTTTGATT-
1 TTTTGATTA
*
3730653 TTTTTATTAA
1 TTTTGATT-A
3730663 TTTT
1 TTTT
3730667 TTGAATTTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
8 18 0.43
9 11 0.26
10 11 0.26
11 2 0.05
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (9 bp):
TTTTGATTA
Found at i:3731679 original size:52 final size:52
Alignment explanation
Indices: 3731610--3731712 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 52
3731600 GACAAGAAAA
*
3731610 ATGATAAAAGTGTCAATATGCTGATTCAAGGCTA-AAGATATTGGACTTAAAG
1 ATGATAAAAGTGCCAATATGCTGATTCAAGGCTAGAA-ATATTGGACTTAAAG
* * *
3731662 ATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCAATATTGGGCTTAAA
1 ATGATAAAAGTGCCAATATGCTGATTCAAGGCTAGAAATATTGGACTTAAA
3731713 ATAAAGAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
52 45 0.98
53 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (52 bp):
ATGATAAAAGTGCCAATATGCTGATTCAAGGCTAGAAATATTGGACTTAAAG
Found at i:3731857 original size:31 final size:31
Alignment explanation
Indices: 3731767--3732096 Score: 291
Period size: 32 Copynumber: 10.4 Consensus size: 31
3731757 CGACATTGGA
*
3731767 TTAGAAGGGTTGCTACCGACTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
* * * * * *
3731798 TTAAAAATGGTTACCACCAATTTATGTGGGCT
1 TT-AGAAGGGTTGCCACCGACTTGTGTGGGCT
* ** *
3731830 TTAGAAGGGTTGTCATTGACTTATGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
* *
3731861 TTGAGAAAGGTTACCACCGACTTGTGTGGGCT
1 TT-AGAAGGGTTGCCACCGACTTGTGTGGGCT
* *
3731893 TTAAGAAAGGTTGCCATCGACTTGTGTGGGCT
1 TT-AGAAGGGTTGCCACCGACTTGTGTGGGCT
* * * * * *
3731925 TTGAAAAGGGTTACCACTGACTTGTATCGACT
1 TT-AGAAGGGTTGCCACCGACTTGTGTGGGCT
* * **
3731957 TTAGAAAAGGTTTGCTATTGACTTGTGTGGGCT
1 TTAG--AAGGGTTGCCACCGACTTGTGTGGGCT
* * *
3731990 TCAAAAGGGTTGCCACCAACTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
* * *
3732021 TCAAAAGGGTTGTCACCGACTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
* * *
3732052 TCAAAAGGGTTGCCATCGACTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
3732083 TTGAGAAGGGTTGC
1 TT-AGAAGGGTTGC
3732097 TATCGACTCG
Statistics
Matches: 240, Mismatches: 54, Indels: 9
0.79 0.18 0.03
Matches are distributed among these distances:
31 107 0.45
32 111 0.46
33 22 0.09
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (31 bp):
TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
Found at i:3731927 original size:64 final size:63
Alignment explanation
Indices: 3731767--3732104 Score: 349
Period size: 64 Copynumber: 5.3 Consensus size: 63
3731757 CGACATTGGA
* * * * * * *
3731767 TTAGAAGGGTTGCTACCGACTTGTGTGGGCTTTAAAAATGGTTACCACCAATTTATGTGGGCT
1 TTAGAAGGGTTGCCATCGACTTGTGTGGGCTTTCAAAAGGGTTACCACCGACTTGTGTGGGCT
* * * *
3731830 TTAGAAGGGTTGTCATTGACTTATGTGGGCTTTGAGAAA-GGTTACCACCGACTTGTGTGGGCT
1 TTAGAAGGGTTGCCATCGACTTGTGTGGGCTTTCA-AAAGGGTTACCACCGACTTGTGTGGGCT
* * * * * *
3731893 TTAAGAAAGGTTGCCATCGACTTGTGTGGGCTTTGAAAAGGGTTACCACTGACTTGTATCGACT
1 TT-AGAAGGGTTGCCATCGACTTGTGTGGGCTTTCAAAAGGGTTACCACCGACTTGTGTGGGCT
* * * * *
3731957 TTAGAAAAGGTTTGCTATTGACTTGTGTGGGC-TTCAAAAGGGTTGCCACCAACTTGTGTGGGCT
1 TTAG--AAGGGTTGCCATCGACTTGTGTGGGCTTTCAAAAGGGTTACCACCGACTTGTGTGGGCT
* * * * * *
3732021 TCAAAAGGGTTGTCACCGACTTGTGTGGGC-TTCAAAAGGGTTGCCATCGACTTGTGTGGGCT
1 TTAGAAGGGTTGCCATCGACTTGTGTGGGCTTTCAAAAGGGTTACCACCGACTTGTGTGGGCT
*
3732083 TTGAGAAGGGTTGCTATCGACT
1 TT-AGAAGGGTTGCCATCGACT
3732105 CGTGCAAGCT
Statistics
Matches: 227, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
62 52 0.23
63 72 0.32
64 81 0.36
65 22 0.10
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (63 bp):
TTAGAAGGGTTGCCATCGACTTGTGTGGGCTTTCAAAAGGGTTACCACCGACTTGTGTGGGCT
Found at i:3732104 original size:32 final size:32
Alignment explanation
Indices: 3731771--3732096 Score: 304
Period size: 31 Copynumber: 10.3 Consensus size: 32
3731761 ATTGGATTAG
* *
3731771 AAGGGTTGCTACCGACTTGTGTGGGCTTTAAA
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGAA
* * * * * *
3731803 AATGGTTACCACCAATTTATGTGGGCTTT-AG
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGAA
* ** *
3731834 AAGGGTTGTCATTGACTTATGTGGGCTTTGAGA
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGA-A
*
3731867 AA-GGTTACCACCGACTTGTGTGGGCTTT-AA
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGAA
* *
3731897 GAAAGGTTGCCATCGACTTGTGTGGGCTTTGAA
1 -AAGGGTTGCCACCGACTTGTGTGGGCTTTGAA
* * * * *
3731930 AAGGGTTACCACTGACTTGTATCGACTTTAGAA
1 AAGGGTTGCCACCGACTTGTGTGGGCTTT-GAA
* * ** *
3731963 AAGGTTTGCTATTGACTTGTGTGGGC-TTCAA
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGAA
* *
3731994 AAGGGTTGCCACCAACTTGTGTGGGC-TTCAA
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGAA
* *
3732025 AAGGGTTGTCACCGACTTGTGTGGGC-TTCAA
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGAA
* *
3732056 AAGGGTTGCCATCGACTTGTGTGGGCTTTGAG
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTGAA
3732088 AAGGGTTGC
1 AAGGGTTGC
3732097 TATCGACTCG
Statistics
Matches: 239, Mismatches: 48, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
30 1 0.00
31 107 0.45
32 105 0.44
33 26 0.11
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (32 bp):
AAGGGTTGCCACCGACTTGTGTGGGCTTTGAA
Found at i:3732116 original size:32 final size:32
Alignment explanation
Indices: 3732056--3732118 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
3732046 TGGGCTTCAA
* ***
3732056 AAGGGTTGCCATCGACTTGTGTGGGCTTTGAG
1 AAGGGTTGCCATCGACTCGTGCAAGCTTTGAG
*
3732088 AAGGGTTGCTATCGACTCGTGCAAGCTTTGA
1 AAGGGTTGCCATCGACTCGTGCAAGCTTTGA
3732119 CGGAGGTGCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.19, C:0.17, G:0.33, T:0.30
Consensus pattern (32 bp):
AAGGGTTGCCATCGACTCGTGCAAGCTTTGAG
Found at i:3732188 original size:31 final size:32
Alignment explanation
Indices: 3732143--3732244 Score: 86
Period size: 31 Copynumber: 3.3 Consensus size: 32
3732133 ACTCATGCGA
*
3732143 CTTTTGACTAAGGTGCCACTAGCTTATGTGGG
1 CTTTTGACTAAGGTGCCACTAACTTATGTGGG
* * * *
3732175 CTTTT-ACTTAGGTGTCGCTAACTTGTGTGGG
1 CTTTTGACTAAGGTGCCACTAACTTATGTGGG
* * * *
3732206 C-TTTGACTCAA-ATGCAACCAACTTGTGTGGG
1 CTTTTGACT-AAGGTGCCACTAACTTATGTGGG
3732237 C-TTTGACT
1 CTTTTGACT
3732245 GGATGTCGCT
Statistics
Matches: 57, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
30 3 0.05
31 48 0.84
32 6 0.11
ACGTcount: A:0.19, C:0.20, G:0.25, T:0.36
Consensus pattern (32 bp):
CTTTTGACTAAGGTGCCACTAACTTATGTGGG
Found at i:3732342 original size:48 final size:49
Alignment explanation
Indices: 3732261--3732353 Score: 134
Period size: 48 Copynumber: 1.9 Consensus size: 49
3732251 CGCTGACTTG
* * *
3732261 TGGGCTTTTGAAAAGATGCCATTAACTTGTGGGCTTAGAAAGGGTCTCA
1 TGGGCTTTTAAAAAGATGCCATTAACTTATGGGCTTAAAAAGGGTCTCA
* *
3732310 TGGGC-TTTAAAAAGGTGCCATTGACTTATGGGCTTAAAAAGGGT
1 TGGGCTTTTAAAAAGATGCCATTAACTTATGGGCTTAAAAAGGGT
3732354 GCCACTGACT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
48 34 0.87
49 5 0.13
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (49 bp):
TGGGCTTTTAAAAAGATGCCATTAACTTATGGGCTTAAAAAGGGTCTCA
Found at i:3732349 original size:28 final size:28
Alignment explanation
Indices: 3732310--3733444 Score: 737
Period size: 28 Copynumber: 39.5 Consensus size: 28
3732300 AAGGGTCTCA
* * *
3732310 TGGGCTTTAAAAAGGTGCCATTGACTTA
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* *
3732338 TGGGC-TTAAAAAGGGTGCCACTGACTTA
1 TGGGCTTTGAAAA-GGTGCCACTGACTTG
* * *
3732366 TAGGCTTTGAAAAGGTGCCATTGACTCG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* *
3732394 TGGGCTTAGAAAAGGTGCGACTGACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* * * *
3732422 AGGGCTTAGAAAGGGTGCCACTGACTCG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* * * *
3732450 TGAGCTTTGAAAGGGTGTCACTGACTCG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* *
3732478 TGGGCTTT-AAAAGGGTGCTACTAACTTG
1 TGGGCTTTGAAAA-GGTGCCACTGACTTG
* * *
3732506 TGGGCTTTAAAAAGGTGCCACTAACTCG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* *
3732534 TGGGCTTTGAAAAGGTGCCACTAACTTA
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* *
3732562 TGGGCTTTGAAAGGGTGCCACAGACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
*
3732590 TGGGCTTT-AAAAGGGTGCCACTGACTTA
1 TGGGCTTTGAAAA-GGTGCCACTGACTTG
* * * *
3732618 TGGCCTTT-AAAAGAGTGACACTAACTCAG
1 TGGGCTTTGAAAAG-GTGCCACTGACT-TG
* *
3732647 -GGGCTTTGAAATGGTGCCATTGACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* * *
3732674 TGGGCTTTAAAAAGGTGCCACTAACTCG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* * *
3732702 TGGGCTTTCAAAAGGTGCTACTAACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* *
3732730 TGGGCTTAGAAAGGGTTGCCACTGACTTGTG
1 TGGGCTTTGAAAAGG-TGCCACTGAC-T-TG
* * *
3732761 TGGGC-ATCAAAAGGGTTGCCAC-CAGCTTGTG
1 TGGGCTTTGAAAA-GG-TGCCACTGA-C-T-TG
* *
3732792 TGGGC-TTCAAAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAAAA-GG-TGCCACTGAC-T-TG
* *
3732823 TGGGCTTTGAGAAGGGTTGCCA-TCGACTCG
1 TGGGCTTTGA-AAAGG-TGCCACT-GACTTG
** * ** *
3732853 TGCAGGCTTTGAATGGGGTGCCGCCAACTCG
1 TG--GGCTTTGAA-AAGGTGCCACTGACTTG
*
3732884 TGCGGCCTTT-AACTAAGGTGCCAC-CACCTTGTG
1 TG-GG-CTTTGAA--AAGGTGCCACTGA-C-T-TG
* **
3732917 TGGGCTTTGAATCAA-GTGCCGCCAACTTGTG
1 TGGGCTTTGAA--AAGGTGCCACTGAC-T-TG
* * * *
3732948 TGGGCTTTGACTCAAATGCTGCCA-AGTCATG
1 TGGGCTTTGA---AAA-GGTGCCACTGACTTG
** * * **
3732979 CAGGCTTTGACTAGGGTGCCACCAACTTGTG
1 TGGGCTTTGA-AAAGGTGCCACTGAC-T-TG
* *** *
3733010 TGGGCTTTTACTTGATGCCACTGACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
*
3733038 TGGGCTTTCG-AAAGGATGCCACTGACTCG
1 TGGGCTTT-GAAAAGG-TGCCACTGACTTG
* * *
3733067 TGGGCTTTG-AAAGGACGCCACTGACGTC
1 TGGGCTTTGAAAAGG-TGCCACTGACTTG
* *
3733095 TGGGCTTT-AAAAGGATGCCACTGACGTC
1 TGGGCTTTGAAAAGG-TGCCACTGACTTG
*
3733123 TGGGCTTT-AAAAGGGTGCCACTGACTTA
1 TGGGCTTTGAAAA-GGTGCCACTGACTTG
* *
3733151 TGGGCTTAGAAAGGGTGCCACTGACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
*
3733179 TGGGCTTTGAAAAGGTGCCACTGACTCG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* * * *
3733207 TGGGCTTAG-AAAGG-GTCACTAACTCG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* * *
3733233 TGGGCTTTGAAAAGGGTGCAACTAACTTA
1 TGGGCTTTGAAAA-GGTGCCACTGACTTG
3733262 TGGGCTTTGAAACA-GTGCCACTGACTTG
1 TGGGCTTTGAAA-AGGTGCCACTGACTTG
** * *
3733290 TGGATTTTGAAAAGATGCCACTAACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* *
3733318 TGGGCTTT-AAGAAGGTGCCACTGATTTA
1 TGGGCTTTGAA-AAGGTGCCACTGACTTG
*
3733346 TGGGCTTTGAAAAGGTGCCACTGACTTA
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
* *
3733374 TGGGCTTTGAAAGGGGTGCCACTGGCTTG
1 TGGGCTTTGAAA-AGGTGCCACTGACTTG
* ** *
3733403 TGGGCTTTGAGAAGGTTTCACTAACTTG
1 TGGGCTTTGAAAAGGTGCCACTGACTTG
3733431 TGGGCTTTGAAAAG
1 TGGGCTTTGAAAAG
3733445 AGGTTGTATT
Statistics
Matches: 896, Mismatches: 161, Indels: 100
0.77 0.14 0.09
Matches are distributed among these distances:
26 18 0.02
27 26 0.03
28 560 0.62
29 97 0.11
30 23 0.03
31 125 0.14
32 36 0.04
33 6 0.01
34 5 0.01
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.27
Consensus pattern (28 bp):
TGGGCTTTGAAAAGGTGCCACTGACTTG
Found at i:3732843 original size:32 final size:32
Alignment explanation
Indices: 3732728--3732957 Score: 151
Period size: 31 Copynumber: 7.4 Consensus size: 32
3732718 GCTACTAACT
* *
3732728 TGTGGGCTTAG-AAAGGGTTGCCACTGACTTG
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTTG
* *
3732759 TGTGGGC-ATCAAAAGGGTTGCCACC-AGCTTG
1 TGTGGGCTTTGAAAAGGGTTGCCACCGA-CTTG
*
3732790 TGTGGGC-TTCAAAAGGGTTGCCACCGACTTG
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTTG
* * *
3732821 TGTGGGCTTTGAGAAGGGTTGCCATCGACTCG
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTTG
** * * * * *
3732853 TGCAGGCTTTG-AATGGGGTGCCGCCAACTCG
1 TGTGGGCTTTGAAAAGGGTTGCCACCGACTTG
* *
3732884 TGCGGCCTTT-AACTAA-GG-TGCCACC-ACCTTG
1 TGTGGGCTTTGAA--AAGGGTTGCCACCGA-CTTG
* *
3732915 TGTGGGCTTTGAATCAA--G-TGCCGCCAACTTG
1 TGTGGGCTTTGAA--AAGGGTTGCCACCGACTTG
3732946 TGTGGGCTTTGA
1 TGTGGGCTTTGA
3732958 CTCAAATGCT
Statistics
Matches: 162, Mismatches: 27, Indels: 20
0.78 0.13 0.10
Matches are distributed among these distances:
30 2 0.01
31 122 0.75
32 37 0.23
33 1 0.01
ACGTcount: A:0.18, C:0.22, G:0.33, T:0.27
Consensus pattern (32 bp):
TGTGGGCTTTGAAAAGGGTTGCCACCGACTTG
Found at i:3732946 original size:31 final size:31
Alignment explanation
Indices: 3732870--3733017 Score: 104
Period size: 31 Copynumber: 4.8 Consensus size: 31
3732860 TTTGAATGGG
* * *
3732870 GTGCCGCCAACTCGTGCGGCCTTT-AA-CTAA
1 GTGCCGCCAACTTGTGTGGGCTTTGAATC-AA
* *
3732900 GGTGCCACCACCTTGTGTGGGCTTTGAATCAA
1 -GTGCCGCCAACTTGTGTGGGCTTTGAATCAA
*
3732932 GTGCCGCCAACTTGTGTGGGCTTTGACTCAA
1 GTGCCGCCAACTTGTGTGGGCTTTGAATCAA
* * * ** ** * *
3732963 ATGCTGCCAAGTCATGCAGGCTTTGACT-AGG
1 GTGCCGCCAACTTGTGTGGGCTTTGAATCA-A
*
3732994 GTGCCACCAACTTGTGTGGGCTTT
1 GTGCCGCCAACTTGTGTGGGCTTT
3733018 TACTTGATGC
Statistics
Matches: 90, Mismatches: 24, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
30 1 0.01
31 84 0.93
32 4 0.04
33 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (31 bp):
GTGCCGCCAACTTGTGTGGGCTTTGAATCAA
Found at i:3733752 original size:26 final size:26
Alignment explanation
Indices: 3733723--3733785 Score: 117
Period size: 26 Copynumber: 2.4 Consensus size: 26
3733713 GTATTATGAA
*
3733723 TGCATGATATTGAATGTTATCATGGT
1 TGCATGATATAGAATGTTATCATGGT
3733749 TGCATGATATAGAATGTTATCATGGT
1 TGCATGATATAGAATGTTATCATGGT
3733775 TGCATGATATA
1 TGCATGATATA
3733786 AAGTCTAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (26 bp):
TGCATGATATAGAATGTTATCATGGT
Found at i:3740723 original size:15 final size:15
Alignment explanation
Indices: 3740685--3740724 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
3740675 TGTATCGACG
*
3740685 ATTTTGTGGTGGGTA
1 ATTTTGTGGTGGATA
**
3740700 ATTAGGTGGTGGATA
1 ATTTTGTGGTGGATA
3740715 ATTTTGTGGT
1 ATTTTGTGGT
3740725 AGATTTGGAG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.45
Consensus pattern (15 bp):
ATTTTGTGGTGGATA
Found at i:3747555 original size:20 final size:20
Alignment explanation
Indices: 3747530--3747585 Score: 112
Period size: 20 Copynumber: 2.8 Consensus size: 20
3747520 TACTACTAAT
3747530 TTCATGTATCGATACATTTG
1 TTCATGTATCGATACATTTG
3747550 TTCATGTATCGATACATTTG
1 TTCATGTATCGATACATTTG
3747570 TTCATGTATCGATACA
1 TTCATGTATCGATACA
3747586 ATGAACATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (20 bp):
TTCATGTATCGATACATTTG
Found at i:3747596 original size:19 final size:20
Alignment explanation
Indices: 3747530--3747608 Score: 99
Period size: 20 Copynumber: 4.0 Consensus size: 20
3747520 TACTACTAAT
*
3747530 TTCATGTATCGATACATTTG
1 TTCATGTATCGATACATATG
*
3747550 TTCATGTATCGATACATTTG
1 TTCATGTATCGATACATATG
3747570 TTCATGTATCGATACA-ATG
1 TTCATGTATCGATACATATG
** *
3747589 AACATGTATCCATACA-ATG
1 TTCATGTATCGATACATATG
3747608 T
1 T
3747609 ATCGATACAA
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
19 18 0.33
20 36 0.67
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.39
Consensus pattern (20 bp):
TTCATGTATCGATACATATG
Found at i:3754080 original size:21 final size:20
Alignment explanation
Indices: 3754047--3754089 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
3754037 AAGTTTTTGT
* **
3754047 TTTTCCTTATTAATTCATTA
1 TTTTCATTATTAAGGCATTA
3754067 TTTTCATTAGTTAAGGCATTA
1 TTTTCATTA-TTAAGGCATTA
3754088 TT
1 TT
3754090 AGTATCTTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.26, C:0.12, G:0.07, T:0.56
Consensus pattern (20 bp):
TTTTCATTATTAAGGCATTA
Found at i:3754686 original size:3 final size:3
Alignment explanation
Indices: 3754678--3754711 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
3754668 TTCGAGTCAA
* *
3754678 CAT CAT CAT CAT CAT CAT CAT CAT TAT CTT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
3754712 GTTTTTGATG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.38
Consensus pattern (3 bp):
CAT
Found at i:3756400 original size:20 final size:19
Alignment explanation
Indices: 3756375--3756430 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
3756365 TATTGCCAGT
*
3756375 TTCATGTATTGATACAATTG
1 TTCATGTATCGATACAA-TG
*
3756395 TTCATGTATCGATATAATG
1 TTCATGTATCGATACAATG
**
3756414 AACATGTATCGATACAA
1 TTCATGTATCGATACAA
3756431 AGCATAATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.38
Consensus pattern (19 bp):
TTCATGTATCGATACAATG
Found at i:3764051 original size:20 final size:19
Alignment explanation
Indices: 3764028--3764068 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
3764018 AAAAAACAAC
3764028 AACAAAAGAAAGAAAAGAAA
1 AACAAAA-AAAGAAAAGAAA
* *
3764048 AACAAAAAATGGAAAGAAA
1 AACAAAAAAAGAAAAGAAA
3764067 AA
1 AA
3764069 AAGAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.78, C:0.05, G:0.15, T:0.02
Consensus pattern (19 bp):
AACAAAAAAAGAAAAGAAA
Found at i:3764062 original size:24 final size:23
Alignment explanation
Indices: 3764035--3764079 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
3764025 AACAACAAAA
3764035 GAAAGAAAAGAAA-AACAAAAAATG
1 GAAAGAAAA-AAAGAA-AAAAAATG
3764059 GAAAGAAAAAAAGAAAAAAAA
1 GAAAGAAAAAAAGAAAAAAAA
3764080 CCTGCTTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (23 bp):
GAAAGAAAAAAAGAAAAAAAATG
Found at i:3765164 original size:65 final size:65
Alignment explanation
Indices: 3765076--3765254 Score: 198
Period size: 58 Copynumber: 2.9 Consensus size: 65
3765066 GTAGGACGCC
* *
3765076 TTTTCCTTTTAAAGCCTACACAAG-TAGGTGGCACCTTC-AGTCCTCAAAGAGCAAGACACTTTT
1 TTTTCCTTTTAAAGCCCACACAAGTTA-GTGGCACCTTCTAGTCCTCAAAGAGCAAGACA-TTTC
3765139 CT
64 CT
* *
3765141 TTTTTCTTTTAAAGCCCATACAAGTTAGTGGCACCTTCTAGTCCTCAAAGAGCAAGACA------
1 TTTTCCTTTTAAAGCCCACACAAGTTAGTGGCACCTTCTAGTCCTCAAAGAGCAAGACATTTCCT
* * * *
3765200 -TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACGTTTTAGTCCT-TAAGAGCAAGA
1 TTTTCCTTTTAAAGCCCACACAAGTTAGTGGCACCTTCTAGTCCTCAAAGAGCAAGA
3765255 TGCCTTTTCT
Statistics
Matches: 103, Mismatches: 9, Indels: 12
0.83 0.07 0.10
Matches are distributed among these distances:
57 10 0.10
58 39 0.38
65 32 0.31
66 22 0.21
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (65 bp):
TTTTCCTTTTAAAGCCCACACAAGTTAGTGGCACCTTCTAGTCCTCAAAGAGCAAGACATTTCCT
Found at i:3768792 original size:79 final size:78
Alignment explanation
Indices: 3768646--3769271 Score: 555
Period size: 79 Copynumber: 7.9 Consensus size: 78
3768636 TCATTGATGT
* * * * *
3768646 TTTTATTTCTAAAATATCGATTTTCCACCATCGAGGATACTCCAATCCCGTTATTTCCGAGGAGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGAGGATACTCTAA-CCCGTTTTTTCTGAGGGGA
* *
3768711 TACTTCTACCTTAG
65 TACTCCAACCTTAG
* * *
3768725 TTTTATTTCTAAAACA-CTAGTTTTCCACCATCGAGGATACTCCAACCTCGTTTTTTCTAAGGGG
1 TTTTATTTCTAAAACATCGA-TTTTCCACCATCGAGGATACTCTAACC-CGTTTTTTCTGAGGGG
3768789 ATACTCCAACCTT-G
64 ATACTCCAACCTTAG
* *
3768803 ATTTTATTTCTAAAACA-CTGATTTTCCACCATCGGGGATACTCTAATCCCATTATTTTC-GAGG
1 -TTTTATTTCTAAAACATC-GATTTTCCACCATCGAGGATACTCTAA-CCCGTT-TTTTCTGAGG
*
3768866 GGATACTCCAATCCTGA-
62 GGATACTCCAA-CCTTAG
* * * * * *
3768883 TTTTATTTCTAAAACACCAATTTTTCACCATCGGGGATACTCTAACCCTATTTTTTC-GAGAGGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGAGGATACTCTAACCC-GTTTTTTCTGAGGGGA
* ** *
3768947 TACTCTAACCCCAA
65 TACTCCAACCTTAG
* * *
3768961 TTTTATTTCTAAAACA-CTAATTTTCCACCATC-AGGGATACTCCAACCCTGTTATTTTC-AAGG
1 TTTTATTTCTAAAACATC-GATTTTCCACCATCGA-GGATACTCTAACCC-GTT-TTTTCTGAGG
**
3769023 GGATACTCCAATCCCGA-
62 GGATACTCCAA-CCTTAG
* *
3769040 TTTTATTTCTAAAACATCGATTTTCCACTATCGGGGATACTCTAACCTCGCTATTTTT-T-AGGG
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGAGGATACTCTAACC-CG-T-TTTTTCTGAGGG
* * *
3769103 AAAACTCCAACCCTAG
63 GATACTCCAACCTTAG
* * *
3769119 TTTTCTTTCTAAAATATCGATTTTCCACCATC-AGGGATACTCTTATCCCGTTATTTT-TGAGGG
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGA-GGATACTC-TAACCCGTT-TTTTCTGAGGG
* * *
3769182 GATACTCCAATCTCAA
63 GATACTCCAACCTTAG
* * * *
3769198 TTTTATTTTTAAAACATCGA-TTTCCACCATC-AGGGATACTCTAACCCCGTTATTTCTAAGAGG
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGA-GGATACTCTAA-CCCGTTTTTTCTGAGGGG
3769261 ATACTCCAACC
64 ATACTCCAACC
3769272 CCGATTTTGT
Statistics
Matches: 465, Mismatches: 54, Indels: 57
0.81 0.09 0.10
Matches are distributed among these distances:
77 10 0.02
78 123 0.26
79 304 0.65
80 27 0.06
81 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.35
Consensus pattern (78 bp):
TTTTATTTCTAAAACATCGATTTTCCACCATCGAGGATACTCTAACCCGTTTTTTCTGAGGGGAT
ACTCCAACCTTAG
Done.