Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold55
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4293517
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.26
Warning! 910309 characters in sequence are not A, C, G, or T
File 19 of 21
Found at i:3915279 original size:22 final size:23
Alignment explanation
Indices: 3915253--3915302 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
3915243 ATATTGATTT
3915253 CCAAAATAAA-AAAAAGAAATTA
1 CCAAAATAAAGAAAAAGAAATTA
* *
3915275 TCAAAATAAAGAAAATGAAATTA
1 CCAAAATAAAGAAAAAGAAATTA
3915298 CCAAA
1 CCAAA
3915303 TTTAAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 9 0.38
23 15 0.62
ACGTcount: A:0.68, C:0.10, G:0.06, T:0.16
Consensus pattern (23 bp):
CCAAAATAAAGAAAAAGAAATTA
Found at i:3915857 original size:47 final size:46
Alignment explanation
Indices: 3915806--3915969 Score: 167
Period size: 47 Copynumber: 3.6 Consensus size: 46
3915796 TGTTTAACTA
3915806 TATTGGCATTAGGACCTAGTCAAACTTTTCTCACTGTTATTTGGCTG
1 TATTGGCATTAGGACCTAGTCAAACTTTTCTCACT-TTATTTGGCTG
* * * * *
3915853 TATTGGCATTAGGACCTGGTCAAAC-TGTCTTC-CTCTATTTAGCGG
1 TATTGGCATTAGGACCTAGTCAAACTTTTC-TCACTTTATTTGGCTG
* * *
3915898 TATTGGCATTA-GTCCTAGTCAAACTTCTTC-CA-TTCTCGTTTGACTG
1 TATTGGCATTAGGACCTAGTCAAACTT-TTCTCACTT-T-ATTTGGCTG
*
3915944 TATTGGCATTAGAACCTAGTCAAACT
1 TATTGGCATTAGGACCTAGTCAAACT
3915970 CTTTTTACTC
Statistics
Matches: 95, Mismatches: 15, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
44 13 0.14
45 21 0.22
46 23 0.24
47 38 0.40
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (46 bp):
TATTGGCATTAGGACCTAGTCAAACTTTTCTCACTTTATTTGGCTG
Found at i:3916914 original size:394 final size:392
Alignment explanation
Indices: 3916184--3917364 Score: 1909
Period size: 393 Copynumber: 3.0 Consensus size: 392
3916174 GCCAACCTTG
* *
3916184 TATCCTTTGTTGACTTGTCAATTTAATCTTGGTCAACTCTTTCATCCTATAGACACCTAATTTCG
1 TATCCTTTGTTGACTTGTCAATTCAATCTTGGTCAACTCTTTCATCCTGTAGACACCTAATTTCG
* * *
3916249 TCTGGCTGCCCATTCTCAGGAGTATTAAAATTGTCTCTCTCGGATAAAGATGATAAGTCCGTAAT
66 TCTGGCTGCCCATTCTCAGGAGTACTAAATTTGTCTCTCTTGGATAAAGATGATAAGTCCGTAAT
3916314 GAAGAAATTTTGTTTTAAAATAATTCCTTGAAAAATTTTGAAAATTACTTTTGTGGATGATATCA
131 GAAGAAATTTTGTTTTAAAATAATTCCTTGAAAAATTTTGAAAATTACTTTTGTGGATGATATCA
* *
3916379 CAGTCAATTCTTCTATTATTAAGAATTTTTTGAGATTTTTCTAAAAAATTCAAAAAAATTGACCG
196 CAGTCAATTCTTCTATTATTAAGAATTTTTTGAGATTTTTCTAAAAAAGT-AAAAAAATTGACTG
* *
3916444 TCGTATATTTTTACCGACACCTATGAGGTTTTCATGCCAATACATGCCACAAAAAATCAAGAATA
260 TCGTATATTTTTACCGACACCTATGAGGTTTTTATGCCAATACATGCCCCAAAAAATCAAGAATA
*
3916509 TTCAGAAAAAATATCTATTGGCATTTTATACCACAAAGGGTCAATTGGTAAATTTTGTCGATTAA
325 TTCAGAAAAAATATCTATTGGCATTTTATACCACAAAAGGTCAATTGGTAAATTTTGTCGATTAA
3916574 TTT
390 TTT
** * * *
3916577 TATCCTTTGTTGACTTGTCAATTCAATCCCGATCAGCTCTTTTATCCCTGTAGACACCTAATTTC
1 TATCCTTTGTTGACTTGTCAATTCAATCTTGGTCAACTCTTTCAT-CCTGTAGACACCTAATTTC
* * *
3916642 GTCTGGCTACCCATTCTC-GAGAGTACTAAATTTGTCTCTCTTGGATAAAGATGACAAGTCCATA
65 GTCTGGCTGCCCATTCTCAG-GAGTACTAAATTTGTCTCTCTTGGATAAAGATGATAAGTCCGTA
3916706 ATGAAGAAATTTTGTTTTAAAATAATTCCTTGAAAAATTTTGAAAATTACTTTTGTGGATGATAT
129 ATGAAGAAATTTTGTTTTAAAATAATTCCTTGAAAAATTTTGAAAATTACTTTTGTGGATGATAT
*
3916771 CACGGTCAATTCTTCTATTATTAAGAATTTTTTGAGATTTTTCTAAAAAAGTAAAAAAATTGACT
194 CACAGTCAATTCTTCTATTATTAAGAATTTTTTGAGATTTTTCTAAAAAAGTAAAAAAATTGACT
* * * * *
3916836 ATCGTATATTTTTACCAACTCTTATGAGGTTTTTATGCCAATACATGCCCCAAAAAATTAAGAAT
259 GTCGTATATTTTTACCGACACCTATGAGGTTTTTATGCCAATACATGCCCCAAAAAATCAAGAAT
*
3916901 ATTCAGAAAAAAATATCTATTGGCATTTTATACCACAAAAGGTTAATTGGTAAATTTTGTCGATT
324 ATTCAG-AAAAAATATCTATTGGCATTTTATACCACAAAAGGTCAATTGGTAAATTTTGTCGATT
3916966 AATTT
388 AATTT
* *
3916971 TATCCTTTGTTGACTTATCAATTCAATCTTGGTCAACTCTTTCATCCTGTAGACACCTAATTTCT
1 TATCCTTTGTTGACTTGTCAATTCAATCTTGGTCAACTCTTTCATCCTGTAGACACCTAATTTCG
* * * * *
3917036 TCTGGCTGCCCATTCTCAGGAGTACTAAATTTATGTCTCCTGGATAAAGAGGATAAGTTCGTAAT
66 TCTGGCTGCCCATTCTCAGGAGTACTAAATTTGTCTCTCTTGGATAAAGATGATAAGTCCGTAAT
* * * * *
3917101 GAAAAAAATTTATTTTAAAATAATTCCTTGAAAAATTTTGAAAGTTACTTATGTGGATGATATCA
131 GAAGAAATTTTGTTTTAAAATAATTCCTTGAAAAATTTTGAAAATTACTTTTGTGGATGATATCA
* * *
3917166 CAGTCAATTCTTCTATTATTAAGAATTTTTAT-ATATTTTTCTAAAAAAGTCAAGAAATTGA-TC
196 CAGTCAATTCTTCTATTATTAAGAATTTTT-TGAGATTTTTCTAAAAAAGTAAAAAAATTGACT-
3917229 GTCGTATATTTTTACCGACACCTATGAGGTTTTTATGCCAATACATGCCCCAAAAAATCAAGAAT
259 GTCGTATATTTTTACCGACACCTATGAGGTTTTTATGCCAATACATGCCCCAAAAAATCAAGAAT
* *
3917294 ATTCAGAAAAAATATATATTGGCATTTTATACCACAAAAGGTCAATTGGTAAATTTTGTCAATTA
324 ATTCAGAAAAAATATCTATTGGCATTTTATACCACAAAAGGTCAATTGGTAAATTTTGTCGATTA
3917359 ATTT
389 ATTT
3917363 TA
1 TA
3917365 AATTTTTTAC
Statistics
Matches: 725, Mismatches: 57, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
392 63 0.09
393 371 0.51
394 291 0.40
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (392 bp):
TATCCTTTGTTGACTTGTCAATTCAATCTTGGTCAACTCTTTCATCCTGTAGACACCTAATTTCG
TCTGGCTGCCCATTCTCAGGAGTACTAAATTTGTCTCTCTTGGATAAAGATGATAAGTCCGTAAT
GAAGAAATTTTGTTTTAAAATAATTCCTTGAAAAATTTTGAAAATTACTTTTGTGGATGATATCA
CAGTCAATTCTTCTATTATTAAGAATTTTTTGAGATTTTTCTAAAAAAGTAAAAAAATTGACTGT
CGTATATTTTTACCGACACCTATGAGGTTTTTATGCCAATACATGCCCCAAAAAATCAAGAATAT
TCAGAAAAAATATCTATTGGCATTTTATACCACAAAAGGTCAATTGGTAAATTTTGTCGATTAAT
TT
Found at i:3917939 original size:166 final size:166
Alignment explanation
Indices: 3917718--3918137 Score: 467
Period size: 166 Copynumber: 2.5 Consensus size: 166
3917708 GGGATTTTTT
* * * * *
3917718 CTCCATAAATTTTTT-TGGAAGGA-TTTCCATGGGTTTAAAATTTTCAATATTCATCAAATATTA
1 CTCCATAAATTTTTTCTGGAGGGATTTTTC-TTGGTTTAAAATTTTTAAAATTCATCAAATATTA
* * *
3917781 TTATTTGATTTATATTAAATTAGTTTTCAAAAACTCCTTCATTTTCATGAGTTTTTAAATTTTTC
65 TTATTTAATTTATATTAAATCAGTTTTCAAAAACTACTTCATTTTCATGAGTTTTTAAATTTTTC
* * * * *
3917846 CTCAAAATTTCTC-GGTTTT-CAAAATATGGAGTTTTCTT
130 CTCAAAATTTCCCTAGTTTTGC-AAA-ACGGAGTTGT-TA
* *
3917884 TTCCAT-AATTTTTTCTGGAGGGATTTTTCTTGGTTTAAAATTTTTAAAATTCATCAAATTTTAT
1 CTCCATAAATTTTTTCTGGAGGGATTTTTCTTGGTTTAAAATTTTTAAAATTCATCAAATATTAT
* * * * * *
3917948 GATTTAACTTACATTAAATCAGTTTTCAAAAACTATTTCATTTTCATGAGTTTTTGAATTTTTCT
66 TATTTAATTTATATTAAATCAGTTTTCAAAAACTACTTCATTTTCATGAGTTTTTAAATTTTTCC
** *
3918013 TTGAAATTTCCCTATTTTTGCAAAACGGAGTTGTTA
131 TCAAAATTTCCCTAGTTTTGCAAAACGGAGTTGTTA
** * * **
3918049 CTCTGTGAATTTTTTC--GAGAGGATTTTTCTTGATTTTTAATTTTTAAAATTCATCAAATATTA
1 CTCCATAAATTTTTTCTGGAG-GGATTTTTCTTGGTTTAAAATTTTTAAAATTCATCAAATATTA
*
3918112 TTATTTAATTCATATTAAATCAGTTT
65 TTATTTAATTTATATTAAATCAGTTT
3918138 GAAAATTCAT
Statistics
Matches: 213, Mismatches: 35, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
164 3 0.01
165 73 0.34
166 125 0.59
167 11 0.05
168 1 0.00
ACGTcount: A:0.30, C:0.11, G:0.10, T:0.49
Consensus pattern (166 bp):
CTCCATAAATTTTTTCTGGAGGGATTTTTCTTGGTTTAAAATTTTTAAAATTCATCAAATATTAT
TATTTAATTTATATTAAATCAGTTTTCAAAAACTACTTCATTTTCATGAGTTTTTAAATTTTTCC
TCAAAATTTCCCTAGTTTTGCAAAACGGAGTTGTTA
Found at i:3918828 original size:11 final size:11
Alignment explanation
Indices: 3918808--3918878 Score: 51
Period size: 11 Copynumber: 6.6 Consensus size: 11
3918798 TGTTCAACTG
3918808 GAAAAAAGAGA
1 GAAAAAAGAGA
*
3918819 GAAAAGAGAGA
1 GAAAAAAGAGA
3918830 -AAGAAAAGCA-A
1 GAA-AAAAG-AGA
* *
3918841 GAAAAAAAATA
1 GAAAAAAGAGA
*
3918852 GAAAAAATAG-
1 GAAAAAAGAGA
*
3918862 GAAAAAATAGA
1 GAAAAAAGAGA
3918873 -AAAAAA
1 GAAAAAA
3918879 CTAAGCTAGT
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
10 19 0.38
11 28 0.56
12 3 0.06
ACGTcount: A:0.75, C:0.01, G:0.20, T:0.04
Consensus pattern (11 bp):
GAAAAAAGAGA
Found at i:3918856 original size:9 final size:9
Alignment explanation
Indices: 3918844--3918877 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
3918834 AAAGCAAGAA
3918844 AAAAAATAG
1 AAAAAATAG
3918853 AAAAAATAGG
1 AAAAAATA-G
3918863 AAAAAATAG
1 AAAAAATAG
3918872 AAAAAA
1 AAAAAA
3918878 ACTAAGCTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (9 bp):
AAAAAATAG
Found at i:3918856 original size:10 final size:10
Alignment explanation
Indices: 3918843--3918878 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
3918833 AAAAGCAAGA
3918843 AAAAAAATAG
1 AAAAAAATAG
3918853 -AAAAAATAG
1 AAAAAAATAG
*
3918862 GAAAAAATAG
1 AAAAAAATAG
3918872 AAAAAAA
1 AAAAAAA
3918879 CTAAGCTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.38
10 15 0.62
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.08
Consensus pattern (10 bp):
AAAAAAATAG
Found at i:3931860 original size:52 final size:52
Alignment explanation
Indices: 3931782--3931982 Score: 323
Period size: 52 Copynumber: 3.9 Consensus size: 52
3931772 CGAAATATGA
*
3931782 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
*
3931834 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
* * *
3931886 AAATTTGCCTACATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
**
3931938 AAATTTGCCTGCATGTATCGATACAAAG-ATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGTAT-AGTGTATCGATACA
3931983 ATGTATCGAT
Statistics
Matches: 139, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
51 2 0.01
52 137 0.99
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTGTATAGTGTATCGATACATCTGGGC
Found at i:3931989 original size:13 final size:13
Alignment explanation
Indices: 3931971--3931995 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3931961 CAAAGATCAG
3931971 TGTATCGATACAA
1 TGTATCGATACAA
3931984 TGTATCGATACA
1 TGTATCGATACA
3931996 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3932077 original size:13 final size:13
Alignment explanation
Indices: 3932059--3932083 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3932049 AAAAAAAACA
3932059 TGTATCGATACAT
1 TGTATCGATACAT
3932072 TGTATCGATACA
1 TGTATCGATACA
3932084 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3932182 original size:21 final size:21
Alignment explanation
Indices: 3932141--3932182 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
3932131 GTTGGGACCT
*
3932141 TGTATCGATACATTTTAACAA
1 TGTATCGATACATTTGAACAA
*
3932162 TGTATCGATACATTTGGACAA
1 TGTATCGATACATTTGAACAA
3932183 AAATGTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTTGAACAA
Found at i:3932520 original size:20 final size:20
Alignment explanation
Indices: 3932495--3932542 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
3932485 TTTCCTGTAT
3932495 CGATACAATTAAGCATATAC
1 CGATACAATTAAGCATATAC
* * *
3932515 CGATACAA-TGATCATATAT
1 CGATACAATTAAGCATATAC
3932534 CGATACAAT
1 CGATACAAT
3932543 GTATCGATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 16 0.67
20 8 0.33
ACGTcount: A:0.44, C:0.19, G:0.10, T:0.27
Consensus pattern (20 bp):
CGATACAATTAAGCATATAC
Found at i:3933123 original size:62 final size:61
Alignment explanation
Indices: 3932992--3933406 Score: 471
Period size: 62 Copynumber: 6.8 Consensus size: 61
3932982 GGTAGCAACC
* * * * * *
3932992 CTTTTAAAGCCTACACAAGTTGGTGACCCCCCCTTTAGTCCTCAAAGAGCAGGATGTCTTTTC
1 CTTTTAAAGCCCACACAAGTTGGTG-GCACTCGTTTAGTCCTCAAAGAGCAGGATG-CTTTTT
* * * * *
3933055 CTTTTAAAGCCCACCCAACTTGGTGGCACTCGTATAGTCCTTAAACAGCAGGATGCATTTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAGGATGC-TTTTT
* * * * * **
3933117 CTTTTAAAGTCCACACAAGTTGGTGGCATTCGTTTCGTCCTCAAATAGCAAGACCCCTTTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAGGA-TGCTTTTT
* *
3933179 CTTTTAAAGCCCACACAAGTTGGCGGCACTCGTTTAGTCCTCAAAGAGCAGGACG-TCTTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAGGATGCT-TTTT
* * *
3933240 -TTTTAAAGTCCACACAAGTTGGTGGCACCCATTTAGTCCTCAAAGAGCAGGATGCCTTTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAGGATG-CTTTTT
* * * *
3933301 TTTTTAAAGCACACACAAGTTGGTGGCACCCATTTAGTCCTCAAAGAGCAGGATGCTTTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAGGATGCTTTTT
*
3933362 -TTCTT-AAGCTCACACAAGTTGGTGGCAC-CTGTTTAGTCCTCAAAG
1 CTT-TTAAAGCCCACACAAGTTGGTGGCACTC-GTTTAGTCCTCAAAG
3933407 TGTAAGACAC
Statistics
Matches: 306, Mismatches: 38, Indels: 19
0.84 0.10 0.05
Matches are distributed among these distances:
59 1 0.00
60 88 0.29
61 18 0.06
62 176 0.58
63 23 0.08
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (61 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAGGATGCTTTTT
Found at i:3933306 original size:122 final size:120
Alignment explanation
Indices: 3932993--3933406 Score: 504
Period size: 122 Copynumber: 3.4 Consensus size: 120
3932983 GTAGCAACCC
* * * * *
3932993 TTTTAAAGCCTACACAAGTTGGTGACCCCCCCTTTAGTCCTCAAAGAGCAGGATGTCTTTTCCTT
1 TTTTAAAGCC-ACACAAGTTGGTG-GCACCCGTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTT
* * * * *
3933058 TTAAAGCCCACCCAACTTGGTGGCACTCGTATAGTCCTTAAACAGCAGGATGCATTTTT
64 TTAAAGCCCACACAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAGGATGC--TTTT
** * * * **
3933117 CTTTTAAAGTCCACACAAGTTGGTGGCATTCGTTTCGTCCTCAAATAGCAAGACCCCTTTTTCTT
1 -TTTTAAAG-CCACACAAGTTGGTGGCACCCGTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTT
* *
3933182 TTAAAGCCCACACAAGTTGGCGGCACTCGTTTAGTCCTCAAAGAGCAGGACGTCTTTT
64 TTAAAGCCCACACAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAGGATG-CTTTT
* *
3933240 TTTTAAAGTCCACACAAGTTGGTGGCACCCATTTAGTCCTCAAAGAGCAGGATGCCTTTTTTTTT
1 TTTTAAAG-CCACACAAGTTGGTGGCACCCGTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTT
* * *
3933305 TAAAGCACACACAAGTTGGTGGCACCCATTTAGTCCTCAAAGAGCAGGATGCTTTT
65 TAAAGCCCACACAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAGGATGCTTTT
* *
3933361 TTTCTTAAGCTCACACAAGTTGGTGGCACCTGTTTAGTCCTCAAAG
1 TTT-TAAAGC-CACACAAGTTGGTGGCACCCGTTTAGTCCTCAAAG
3933407 TGTAAGACAC
Statistics
Matches: 249, Mismatches: 36, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
121 9 0.04
122 139 0.56
123 4 0.02
124 73 0.29
125 22 0.09
126 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (120 bp):
TTTTAAAGCCACACAAGTTGGTGGCACCCGTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTT
AAAGCCCACACAAGTTGGTGGCACTCGTTTAGTCCTCAAAGAGCAGGATGCTTTT
Found at i:3933610 original size:62 final size:62
Alignment explanation
Indices: 3933425--3935468 Score: 2216
Period size: 62 Copynumber: 33.1 Consensus size: 62
3933415 ACCACACAAT
* *
3933425 GTGGCACCCGTTTAGTCCTTAAAGAGCAGGACGCCTTTTTCTTTTAAAG-CCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * *
3933486 GTGGCAACCATTTAATCCTCAAAGAGTAGGATG---TTTT-TTTTAAAGCCCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * *
3933544 GTGGCACCCGTTTAGTCCTCAAAGAGCAAGACGTCTTTTTCTTTTAAAGCCCATACAAGTTT
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
*** * * *
3933606 GTGGCATTTGTTTAGTCCTTAAATAGTAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * * *
3933668 GTGGCATCCATTCAGTCCTCAAAGAGTAGGACACCTTTTTATTTTTTAAAGCCCATACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCC-TTTT-TCTTTTAAAGCCCACACAAGTTG
* * * * *
3933732 AT-GCACCCGTTTAGTCCTCAAAGAGTGGGATGTCTTTTTCTTTCAAAGCCCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * *
3933793 GTGGAACCCGTTTAGTCCTCAAAGAGCAGGACG-CTTTTTTTTTTAAAGCCCGCACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* *
3933854 GTGGCACCCGTTTAGTCCTCAAAAAGTAGGACGCC-TTTT-TTTTAAAGCCCACACAAGTTT
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * ** *
3933914 GTGGCACCCATTTAGTCCTCAAAGAGCAAGACTTCTTTTTCTTTTAAGGCCCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * *
3933976 GTGGCACCCGTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAGAGCCCACACAAGTTA
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * * *
3934038 GTGGCACCCATTTAGTCCTTAAAGAGTAGGATGCTTTTTTCTTTCAAAGCCCACATAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * *
3934100 GTGGCACCTGTTCAGTCCTCAAAGAGTAGGAC-ACTTTTT-TTTAAAAGCCCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * *
3934160 GTGGTACCCGTTTAGTCCTCAAAAAGCAAGACGCCTTTTTCTTTTAAAGCTCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * * * *
3934222 GTGGCACCTGTTCAGTCCTTAAAGAGCAAGACACCTTTTTCTTTTTTAAAGCCCACACAAGTTA
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTC--TTTTAAAGCCCACACAAGTTG
* * * *
3934286 TTGGCACCCGTTTAGTCCTCAAAGAGCAGGAC-CTCTTTCTT-TTTAAAAGCCCACATAAGTCT-
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGC-CTTT-TTCTTTTAAAGCCCACACAAGT-TG
* * * * ** **
3934348 ATGGCATCTGTTTAGTCCTCAAAGAGTAGGATGGTTTTTTCTTTTAAAGCCTTCACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * * ** * * * * * *
3934410 GTAGCATCCATTCAGTTCTCAAAGAACAAGACACCTTTTTATTTTTTAAAACCCATACTAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCC-TTTT-TCTTTTAAAGCCCACACAAGTTG
* * ** * * * * * *
3934474 GTAGCACCCATTTAGTCCTCAAAGAACAAGACACCTTTTTATTTTTTAAAACCCATACTAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCC-TTTT-TCTTTTAAAGCCCACACAAGTTG
* * *
3934538 GTAGCACCCATTTAGTCCTCAAAGAGTAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* *
3934600 GTGGCACCCGTTTAGTCCTCAAAGAGTAAGACGCCTTTTTCTTTTAAAGCCTACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * *
3934662 GTGGCACCCATTTAGTCCTCAAAGTGTAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * *
3934724 GTGGCACCCATTTAGTCCTCAAAGAGTAAGAC-CC-CTTT-TTTTGAAGCCTACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * * *
3934783 GTGGCATCCATTTAGTCCTTAAAGAGCAGGACGTCTTTTTCTTTTAAAGTCCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * *
3934845 GTGGCACCCGTTTTGTCCTTAAAGAGTAGGATGCTTTTTTTCTTTTAAAGCCCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGC-CTTTTTCTTTTAAAGCCCACACAAGTTG
* * ** * *
3934908 GTGAC-CCCGTTCAGTCCTCAAAGAGTAGGATACCTTTTT-TTTT-AAGCTCACATAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * **
3934967 GTGGCACCCGTTTAGTCCTCAAAGAGCATGACGCCTTTTT-TTTTAAAGCCCACACAAGTAA
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * *
3935028 GTGGCACTCGTTTAGTCCTCAAAGAGCA-GATG-CTTTTTCTTTTAAAGTCCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * *
3935088 GTGGCACCCATTCAGTCCTCAAAGAGTAAGACACCTTTTTATTTTTTAAAGCCCACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCC-TTTT-TCTTTTAAAGCCCACACAAGTTG
* * * * ***
3935152 GTGGCACCTGTTTAGTCATCAAAAAGTAGGATGCCTTTTTCTTTTAAAGCATGCACAAGTT-
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* **
3935213 GTGGCACCC-TTTCAGTCCTCAAAGAGTAGGATGTTTTTTTCCTTTTAAAGCCCACACAAGTTG
1 GTGGCACCCGTTT-AGTCCTCAAAGAGTAGGACGCCTTTTT-CTTTTAAAGCCCACACAAGTTG
* * * * * * *
3935276 GTGGCACCCATTCAGGCCTCAAAGAGCAGCACACCTTTTTCTTTTAAAGCCAACACAAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * * * *
3935338 GTGGTACTCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCTTTTAAAGCCCACACAAGTTT
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
** * *
3935400 GTGGCACCTATTTAGTCCTCAAAGAGTAGGACGCC-TTTT-TTTTAAAGCCCAAACGAGTTG
1 GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
3935460 GTGGCACCC
1 GTGGCACCC
3935469 TAGCTAAAGC
Statistics
Matches: 1676, Mismatches: 269, Indels: 77
0.83 0.13 0.04
Matches are distributed among these distances:
57 8 0.00
58 43 0.03
59 71 0.04
60 208 0.12
61 215 0.13
62 793 0.47
63 106 0.06
64 230 0.14
65 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (62 bp):
GTGGCACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
Found at i:3934130 original size:246 final size:248
Alignment explanation
Indices: 3933425--3935468 Score: 2217
Period size: 245 Copynumber: 8.3 Consensus size: 248
3933415 ACCACACAAT
* * * *
3933425 GTGGCACCCGTTTAGTCCTTAAAGAGCAGGACGCCTTTTTCTTTTAAAG-CCACACAAGTTGGTG
1 GTGGCACCCATTTAGTCCTCAAAGAGTAGGACTCCTTTTTCTTTTAAAGCCCACACAAGTTGGTG
* * * * *
3933489 GCAACCATTTAATCCTCAAAGAGTAGGATG---TTTT-TTTTAAAGCCCACACAAGTTGGTGGCA
66 GCACCCGTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * **
3933550 CCCGTTTAGTCCTCAAAGAGCAAGACG-TCTTTTTCTTTTAAAGCCCATACAAGTTTGTGGCATT
131 CCCATTTAGTCCTCAAAGAGCAGGACGCT-TTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC
* * * *
3933614 TGTTTAGTCCTTAAATAGTAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTG
195 CGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * * *
3933668 GTGGCATCCATTCAGTCCTCAAAGAGTAGGACACCTTTTTATTTTTTAAAGCCCATACAAGTTGA
1 GTGGCACCCATTTAGTCCTCAAAGAGTAGGACTCC-TTTT-TCTTTTAAAGCCCACACAAGTTGG
** * * *
3933733 T-GCACCCGTTTAGTCCTCAAAGAGTGGGATGTCTTTTTCTTTCAAAGCCCACACAAGTTGGTGG
64 TGGCACCCGTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGG
* * *
3933797 AACCCGTTTAGTCCTCAAAGAGCAGGACGCTTTTTT-TTTTAAAGCCCGCACAAGTTGGTGGCAC
129 CACCCATTTAGTCCTCAAAGAGCAGGACGCTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC
* *
3933861 CCGTTTAGTCCTCAAAAAGTAGGACGCC-TTTT-TTTTAAAGCCCACACAAGTTT
194 CCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * *
3933914 GTGGCACCCATTTAGTCCTCAAAGAGCAAGACTTCTTTTTCTTTTAAGGCCCACACAAGTTGGTG
1 GTGGCACCCATTTAGTCCTCAAAGAGTAGGACTCCTTTTTCTTTTAAAGCCCACACAAGTTGGTG
* * *
3933979 GCACCCGTTTAGTCCTCAAAGAGCAGGACGTCTTTTTCTTTTAGAGCCCACACAAGTTAGTGGCA
66 GCACCCGTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * *
3934044 CCCATTTAGTCCTTAAAGAGTAGGATGCTTTTTTCTTTCAAAGCCCACATAAGTTGGTGGCACCT
131 CCCATTTAGTCCTCAAAGAGCAGGACGCTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
* * *
3934109 GTTCAGTCCTCAAAGAGTAGGAC-ACTTTTT-TTTAAAAGCCCACACAAGTTG
196 GTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * * * *
3934160 GTGGTACCCGTTTAGTCCTCAAAAAGCAAGACGCCTTTTTCTTTTAAAGCTCACACAAGTTGGTG
1 GTGGCACCCATTTAGTCCTCAAAGAGTAGGACTCCTTTTTCTTTTAAAGCCCACACAAGTTGGTG
* * * * * **
3934225 GCACCTGTTCAGTCCTTAAAGAGCAAGACACCTTTTTCTTTTTTAAAGCCCACACAAGTTATTGG
66 GCACCCGTTTAGTCCTCAAAGAGCAGGACGCCTTTTTC--TTTTAAAGCCCACACAAGTTGGTGG
* * * *
3934290 CACCCGTTTAGTCCTCAAAGAGCAGGAC-CTCTTTCTT-TTTAAAAGCCCACATAAGTCT-ATGG
129 CACCCATTTAGTCCTCAAAGAGCAGGACGCT-TTT-TTCTTTTAAAGCCCACACAAGT-TGGTGG
* * * ** **
3934352 CATCTGTTTAGTCCTCAAAGAGTAGGATGGTTTTTTCTTTTAAAGCCTTCACAAGTTG
191 CACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * ** * * * * * *
3934410 GTAGCATCCATTCAGTTCTCAAAGAACAAGACACCTTTTTATTTTTTAAAACCCATACTAGTTGG
1 GTGGCACCCATTTAGTCCTCAAAGAGTAGGACTCC-TTTT-TCTTTTAAAGCCCACACAAGTTGG
* * * * * * * * *
3934475 TAGCACCCATTTAGTCCTCAAAGAACAAGACACCTTTTTATTTTTTAAAACCCATACTAGTTGGT
64 TGGCACCCGTTTAGTCCTCAAAGAGCAGGACGCC-TTTT-TCTTTTAAAGCCCACACAAGTTGGT
* * * *
3934540 AGCACCCATTTAGTCCTCAAAGAGTAGGATGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGC
127 GGCACCCATTTAGTCCTCAAAGAGCAGGACGCTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGC
* *
3934605 ACCCGTTTAGTCCTCAAAGAGTAAGACGCCTTTTTCTTTTAAAGCCTACACAAGTTG
192 ACCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
*
3934662 GTGGCACCCATTTAGTCCTCAAAGTGTAGGA-TGCCTTTTTCTTTTAAAGCCCACACAAGTTGGT
1 GTGGCACCCATTTAGTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTAAAGCCCACACAAGTTGGT
* * * * * *
3934726 GGCACCCATTTAGTCCTCAAAGAGTAAGAC-CC-CTTT-TTTTGAAGCCTACACAAGTTGGTGGC
65 GGCACCCGTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGC
* * *
3934788 ATCCATTTAGTCCTTAAAGAGCAGGACG-TCTTTTTCTTTTAAAGTCCACACAAGTTGGTGGCAC
130 ACCCATTTAGTCCTCAAAGAGCAGGACGCT-TTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC
* * * *
3934852 CCGTTTTGTCCTTAAAGAGTAGGATGCTTTTTTTCTTTTAAAGCCCACACAAGTTG
194 CCGTTTAGTCCTCAAAGAGTAGGACGC-CTTTTTCTTTTAAAGCCCACACAAGTTG
* * * * *
3934908 GTGAC-CCCGTTCAGTCCTCAAAGAGTAGGA-TACCTTTTT-TTTT-AAGCTCACATAAGTTGGT
1 GTGGCACCCATTTAGTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTAAAGCCCACACAAGTTGGT
* **
3934969 GGCACCCGTTTAGTCCTCAAAGAGCATGACGCCTTTTT-TTTTAAAGCCCACACAAGTAAGTGGC
65 GGCACCCGTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGC
* * * *
3935033 ACTCGTTTAGTCCTCAAAGAGCA-GATGC-TTTTTCTTTTAAAGTCCACACAAGTTGGTGGCACC
130 ACCCATTTAGTCCTCAAAGAGCAGGACGCTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC
* * * * *
3935096 CATTCAGTCCTCAAAGAGTAAGACACCTTTTTATTTTTTAAAGCCCACACAAGTTG
195 CGTTTAGTCCTCAAAGAGTAGGACGCC-TTTT-TCTTTTAAAGCCCACACAAGTTG
** * * ***
3935152 GTGGCACCTGTTTAGTCATCAAAAAGTAGGA-TGCCTTTTTCTTTTAAAGCATGCACAAGTT-GT
1 GTGGCACCCATTTAGTCCTCAAAGAGTAGGACT-CCTTTTTCTTTTAAAGCCCACACAAGTTGGT
* * **
3935215 GGCACCC-TTTCAGTCCTCAAAGAGTAGGATGTTTTTTTCCTTTTAAAGCCCACACAAGTTGGTG
65 GGCACCCGTTT-AGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTAAAGCCCACACAAGTTGGTG
* * * * * * *
3935279 GCACCCATTCAGGCCTCAAAGAGCAGCACACCTTTTTCTTTTAAAGCCAACACAAGTTGGTGGTA
128 GCACCCATTTAGTCCTCAAAGAGCAGGACGCTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * *
3935344 CTCATTTAGTCCTCAAAGAGCAAGACACCTTTTTCTTTTAAAGCCCACACAAGTTT
193 CCCGTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
* * * *
3935400 GTGGCACCTATTTAGTCCTCAAAGAGTAGGACGCC-TTTT-TTTTAAAGCCCAAACGAGTTGGTG
1 GTGGCACCCATTTAGTCCTCAAAGAGTAGGACTCCTTTTTCTTTTAAAGCCCACACAAGTTGGTG
3935463 GCACCC
66 GCACCC
3935469 TAGCTAAAGC
Statistics
Matches: 1527, Mismatches: 231, Indels: 82
0.83 0.13 0.04
Matches are distributed among these distances:
243 130 0.09
244 60 0.04
245 334 0.22
246 302 0.20
247 32 0.02
248 241 0.16
249 72 0.05
250 149 0.10
251 11 0.01
252 190 0.12
253 5 0.00
254 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (248 bp):
GTGGCACCCATTTAGTCCTCAAAGAGTAGGACTCCTTTTTCTTTTAAAGCCCACACAAGTTGGTG
GCACCCGTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
CCCATTTAGTCCTCAAAGAGCAGGACGCTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCC
GTTTAGTCCTCAAAGAGTAGGACGCCTTTTTCTTTTAAAGCCCACACAAGTTG
Found at i:3935490 original size:31 final size:32
Alignment explanation
Indices: 3935455--3935541 Score: 92
Period size: 31 Copynumber: 2.8 Consensus size: 32
3935445 AGCCCAAACG
3935455 AGTTGGTGGCACCCT-AGCTAAAG-CCCGCACA
1 AGTTGGTGGCACCCTGAG-TAAAGTCCCGCACA
* * *
3935486 AGTTGGTAGCA-CTTGAGTCAAGTCCCGCACA
1 AGTTGGTGGCACCCTGAGTAAAGTCCCGCACA
* *
3935517 AGCTGGTGGCA-CCTGAGTCAAGTCC
1 AGTTGGTGGCACCCTGAGTAAAGTCC
3935542 ACATTAGTTG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
30 6 0.12
31 42 0.88
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (32 bp):
AGTTGGTGGCACCCTGAGTAAAGTCCCGCACA
Found at i:3935711 original size:32 final size:34
Alignment explanation
Indices: 3935646--3935714 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
3935636 GGCGCCTGAG
*
3935646 TCAAAGCCTACACAAGTTGGTGGCATCCTTTTTT
1 TCAAAGCCCACACAAGTTGGTGGCATCCTTTTTT
*
3935680 TCAAAGCCCACA-AGAGTTGGTGGCA-GCTTTTTT
1 TCAAAGCCCACACA-AGTTGGTGGCATCCTTTTTT
3935713 TC
1 TC
3935715 CTTTTTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
33 10 0.31
34 22 0.69
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (34 bp):
TCAAAGCCCACACAAGTTGGTGGCATCCTTTTTT
Found at i:3935789 original size:32 final size:32
Alignment explanation
Indices: 3935753--3935918 Score: 145
Period size: 32 Copynumber: 5.1 Consensus size: 32
3935743 CAAGCTGGTA
* *
3935753 GCAACCTTCTCTAAAGTCCACACAAGTCAATG
1 GCAACCTTCTTTAAAGCCCACACAAGTCAATG
* *
3935785 GCAACCTTTTTTAAAACCCACACAAGTCAATG
1 GCAACCTTCTTTAAAGCCCACACAAGTCAATG
** * ***
3935817 GCAACCCCCTTCAAAGCCCACACAAGTTGGTG
1 GCAACCTTCTTTAAAGCCCACACAAGTCAATG
* * **
3935849 GCATCCTTTTTTTTAAAGCCCACACAAGTCGGTG
1 GCAACC--TTCTTTAAAGCCCACACAAGTCAATG
* *
3935883 GCAATCC-TCTTTTGAAGTCCACACAAGTCAATG
1 GCAA-CCTTC-TTTAAAGCCCACACAAGTCAATG
3935916 GCA
1 GCA
3935919 TTTCCTTCTA
Statistics
Matches: 106, Mismatches: 24, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
32 58 0.55
33 22 0.21
34 24 0.23
35 2 0.02
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (32 bp):
GCAACCTTCTTTAAAGCCCACACAAGTCAATG
Found at i:3935872 original size:34 final size:35
Alignment explanation
Indices: 3935728--3935911 Score: 117
Period size: 32 Copynumber: 5.6 Consensus size: 35
3935718 TTTTTTTTCT
*
3935728 TTTTTTAAAG-CCACACAAG-CTGGTAGCAA--C-C
1 TTTTTTAAAGCCCACACAAGTC-GGTGGCAATCCTC
* * * **
3935759 TTCTCTAAAGTCCACACAAGTCAATGGCAA--C-C
1 TTTTTTAAAGCCCACACAAGTCGGTGGCAATCCTC
* **
3935791 TTTTTTAAAACCCACACAAGTCAATGGCAA-CC-C
1 TTTTTTAAAGCCCACACAAGTCGGTGGCAATCCTC
** * * *
3935824 -CCTTCAAAGCCCACACAAGTTGGTGGC-ATCCTT
1 TTTTTTAAAGCCCACACAAGTCGGTGGCAATCCTC
3935857 TTTTTTAAAGCCCACACAAGTCGGTGGCAATCCTC
1 TTTTTTAAAGCCCACACAAGTCGGTGGCAATCCTC
* *
3935892 --TTTTGAAGTCCACACAAGTC
1 TTTTTTAAAGCCCACACAAGTC
3935912 AATGGCATTT
Statistics
Matches: 122, Mismatches: 24, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
31 9 0.07
32 64 0.52
33 21 0.17
34 23 0.19
35 5 0.04
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (35 bp):
TTTTTTAAAGCCCACACAAGTCGGTGGCAATCCTC
Found at i:3935886 original size:66 final size:65
Alignment explanation
Indices: 3935726--3935918 Score: 178
Period size: 64 Copynumber: 3.0 Consensus size: 65
3935716 TTTTTTTTTT
* ** *
3935726 CTTTTTTTAAAG-CCACACAAG-CTGGTAGCAACCTTCTCTAAAGTCCACACAAGTCAATGGCAA
1 CTTTTTTTAAAGCCCACACAAGTC-GGTGGCAACCCCCTCTAAAGCCCACACAAGTCAATGGCAA
3935789 C
65 C
* ** *** *
3935790 C-TTTTTTAAAACCCACACAAGTCAATGGCAACCCCCT-TCAAAGCCCACACAAGTTGGTGGCAT
1 CTTTTTTTAAAGCCCACACAAGTCGGTGGCAACCCCCTCT-AAAGCCCACACAAGTCAATGGCAA
3935853 C
65 C
* * * * *
3935854 CTTTTTTTTAAAGCCCACACAAGTCGGTGGCAATCCTCTTTTGAAGTCCACACAAGTCAATGGCA
1 C-TTTTTTTAAAGCCCACACAAGTCGGTGGCAA-CCCCCTCTAAAGCCCACACAAGTCAATGGCA
3935919 TTTCCTTCTA
Statistics
Matches: 101, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
63 10 0.10
64 40 0.40
65 1 0.01
66 27 0.27
67 22 0.22
68 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (65 bp):
CTTTTTTTAAAGCCCACACAAGTCGGTGGCAACCCCCTCTAAAGCCCACACAAGTCAATGGCAAC
Found at i:3936026 original size:52 final size:52
Alignment explanation
Indices: 3935929--3936027 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 52
3935919 TTTCCTTCTA
* * *
3935929 AGCCCAATGTCGTTGGCCTTAAATCAGCACATTGGCGCCCTTATCATGTTTG
1 AGCCCAATATCGTTGGCCTTAAATCAACACATTGGCACCCTTATCATGTTTG
* *
3935981 AGCCCAATATCGTTGGCCTTGAATCAACATATTGGCA-CCTCTATCAT
1 AGCCCAATATCGTTGGCCTTAAATCAACACATTGGCACCCT-TATCAT
3936028 TTTTAAACCT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
51 3 0.07
52 38 0.93
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.30
Consensus pattern (52 bp):
AGCCCAATATCGTTGGCCTTAAATCAACACATTGGCACCCTTATCATGTTTG
Found at i:3943243 original size:164 final size:162
Alignment explanation
Indices: 3942775--3943257 Score: 524
Period size: 164 Copynumber: 2.9 Consensus size: 162
3942765 TTTTTAAACT
* * *
3942775 TTAATCACTTTTTTAATCTTTTATATTCCTATGGGGATTCGTAGAGGTATAAAAGATTTCAAAAA
1 TTAATCATTTTTTTAATCTTTTATATTCCTATGGGGGTTCGTAGGGGTATAAAAGATTTCAAAAA
* * * * *
3942840 CTTTTCGTATCTTTTCATGTTGCCATTAAGATATGAAATGCTATTTTTTCAAAATGAATAAATAA
66 ATTTTCGTATCTTTTCAGGTT-CCATTAAGGTATGAAAT--AATATTTTC-AAA--AATAAATAA
** *
3942905 ATAAAACTAAATTAACACTTTCATAATTGAAATATATA
125 ATAAAACTAAATTAACACTTTCATAATCCAAATAAATA
* * * *
3942943 TTAATCATTTTTCTT-ATCTTTTATATTCTTATAGGGGTCCGTAGGGGCATAAAAGATTTC-AAA
1 TTAATCATTTTT-TTAATCTTTTATATTCCTATGGGGGTTCGTAGGGGTATAAAAGATTTCAAAA
* * * ** * * *
3943006 ATTTTTCGTATCTTTTTAGGTTCCATTAAGGTGTGAAATGGTATTTTCGAAAAGAAGTAAATAAA
65 AATTTTCGTATCTTTTCAGGTTCCATTAAGGTATGAAATAATATTTTCAAAAATAAATAAATAAA
* * * *
3943071 ATTAAATTAACACTTTTATCA-CCAAGATAAATT
130 ACTAAATTAACACTTTCATAATCCAA-ATAAATA
* *
3943104 TTAATC-TTTCTATTTAATTTTTTATATTCCTATGGGGGTTTGTAGGGGTATAAAAGATTTCAAA
1 TTAATCATTT-T-TTTAATCTTTTATATTCCTATGGGGGTTCGTAGGGGTATAAAAGATTTCAAA
* * * * *
3943168 AAATTTTCATATCTTTTCGGGCTTCCATTAAGGTACGAAATAATATTTTCAAAAATAAACAAATT
64 AAATTTTCGTATCTTTTCAGG-TTCCATTAAGGTATGAAATAATATTTTCAAAAATAAATAAATA
*
3943233 AAAGTAAATTAACACTTTCATAATC
128 AAACTAAATTAACACTTTCATAATC
3943258 GACACAAAAT
Statistics
Matches: 260, Mismatches: 47, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
160 5 0.02
161 44 0.17
162 40 0.15
163 21 0.08
164 60 0.23
165 1 0.00
166 15 0.06
167 22 0.08
168 50 0.19
169 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.40
Consensus pattern (162 bp):
TTAATCATTTTTTTAATCTTTTATATTCCTATGGGGGTTCGTAGGGGTATAAAAGATTTCAAAAA
ATTTTCGTATCTTTTCAGGTTCCATTAAGGTATGAAATAATATTTTCAAAAATAAATAAATAAAA
CTAAATTAACACTTTCATAATCCAAATAAATA
Found at i:3943427 original size:3 final size:3
Alignment explanation
Indices: 3943419--3943476 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
3943409 CTTAAAAAAT
3943419 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
3943467 ATA ATA ATA A
1 ATA ATA ATA A
3943477 GATTTCTCAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:3947902 original size:13 final size:13
Alignment explanation
Indices: 3947884--3947908 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3947874 ATTTTGCTTA
3947884 GTATCGATACATT
1 GTATCGATACATT
3947897 GTATCGATACAT
1 GTATCGATACAT
3947909 AAAACTGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:3948004 original size:42 final size:42
Alignment explanation
Indices: 3947945--3948031 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
3947935 TTTCACTATT
3947945 CATCACTGTTCATGTATCGATACATTATGAATAGTATCGATA
1 CATCACTGTTCATGTATCGATACATTATGAATAGTATCGATA
*
3947987 CATCACTGTTCATGTATCGATACATTGTGAATAGTATCGATA
1 CATCACTGTTCATGTATCGATACATTATGAATAGTATCGATA
3948029 CAT
1 CAT
3948032 TGAGTCCAAC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (42 bp):
CATCACTGTTCATGTATCGATACATTATGAATAGTATCGATA
Found at i:3948006 original size:22 final size:22
Alignment explanation
Indices: 3947945--3948011 Score: 86
Period size: 22 Copynumber: 3.1 Consensus size: 22
3947935 TTTCACTATT
3947945 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
* *
3947967 CATTA-TG--AATAGTATCGATA
1 CATCACTGTTCAT-GTATCGATA
3947987 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
3948009 CAT
1 CAT
3948012 TGTGAATAGT
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 2 0.05
20 13 0.35
21 4 0.11
22 16 0.43
23 2 0.05
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:3948033 original size:20 final size:20
Alignment explanation
Indices: 3947958--3948033 Score: 91
Period size: 20 Copynumber: 3.7 Consensus size: 20
3947948 CACTGTTCAT
*
3947958 GTATCGATACATTATGAATA
1 GTATCGATACATTGTGAATA
**
3947978 GTATCGATACATCACTGTTCAT-
1 GTATCGATACAT---TGTGAATA
3948000 GTATCGATACATTGTGAATA
1 GTATCGATACATTGTGAATA
3948020 GTATCGATACATTG
1 GTATCGATACATTG
3948034 AGTCCAACGG
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
19 5 0.11
20 26 0.55
22 12 0.26
23 4 0.09
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (20 bp):
GTATCGATACATTGTGAATA
Found at i:3949573 original size:20 final size:20
Alignment explanation
Indices: 3949548--3949588 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
3949538 AAAACCCAGA
3949548 ATAATAAATAATATATCGAT
1 ATAATAAATAATATATCGAT
*
3949568 ATAATAAATAATATATTGAT
1 ATAATAAATAATATATCGAT
3949588 A
1 A
3949589 CAAATAGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (20 bp):
ATAATAAATAATATATCGAT
Found at i:3954237 original size:61 final size:62
Alignment explanation
Indices: 3953938--3954280 Score: 263
Period size: 61 Copynumber: 5.6 Consensus size: 62
3953928 GGGCTTATAG
* *** * *
3953938 ATGACAAAGGTGCCAATATGCTGATTCAAGGCCAATAAGATTGGACTT-AAAGATGCGAAGA
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAAGATGAGAAGA
* * ** * *
3953999 ATTATAAAAGTGCTGATATGCTGATTCACGGCCAGCGATATCAT-G-CTTGAAAGATGAGGAGA
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATAT--TGGACTTGAAAGATGAGAAGA
** * * *
3954061 ACAAGAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTGAAAGA-AAGAAGA
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAAGATGAGAAGA
* * * ** * * * * *
3954122 CT--TAAGAAGTGCCAATGTATTGATTCAAGGCCAACGACATCGGGCTTG-AAGATGAGAAAA
1 ATGATAA-AGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAAGATGAGAAGA
* * * *
3954182 ATGATAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTT-AATGATGATAAGG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAAGATGAGAAGA
* * * * *
3954243 ATGAGAATA-ATGCCAATGTGCTGAATCAAGGCTAGCGA
1 ATGATAA-AGGTGCCAATATGCTGATTCAAGGCCAGCGA
3954281 AATTAGGCTT
Statistics
Matches: 220, Mismatches: 51, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
59 6 0.03
60 42 0.19
61 112 0.51
62 59 0.27
63 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.23
Consensus pattern (62 bp):
ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAAGATGAGAAGA
Found at i:3954454 original size:32 final size:31
Alignment explanation
Indices: 3954395--3955145 Score: 534
Period size: 32 Copynumber: 24.0 Consensus size: 31
3954385 CCAATGACAT
* *
3954395 TGGGCTTT-GAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTGTG
* *
3954425 TCGGCTTTAGAGAAGGTTACCACCAACTTGTG
1 TGGGCTTTAGA-AAGGTTGCCACCAACTTGTG
*
3954457 TGGGCTTTA-AAAGAGTTGCCA-CTACTTGTG
1 TGGGCTTTAGAAAG-GTTGCCACCAACTTGTG
** * * * *
3954487 CAGGCTTTAGAAGGAGATGCCACTAACTTATG
1 TGGGCTTTAGAAAG-GTTGCCACCAACTTGTG
** *
3954519 CAGGCTTTAGGGAAGGTTGCCACCAACTTGTG
1 TGGGCTTTA-GAAAGGTTGCCACCAACTTGTG
*
3954551 TGGGCTTTAGAAGGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTGTG
3954582 TGGGCTTTAG-AAGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTGTG
* * *
3954612 TAGGCTTTAGAAGGAGATGCCACCAACTTGTG
1 TGGGCTTTAGAAAG-GTTGCCACCAACTTGTG
* *
3954644 TGGGCTTTTA-AGAGGGTTGCCACCGACTTGTG
1 TGGGC-TTTAGA-AAGGTTGCCACCAACTTGTG
* *
3954676 TAGGCTATT-GAAGAGGGTTGCCATCAACTTGTG
1 TGGGCT-TTAGAA-A-GGTTGCCACCAACTTGTG
* *
3954709 TGGGCTTTAAAAAGGGTTGCCACCAACTGGTG
1 TGGGCTTTAGAAA-GGTTGCCACCAACTTGTG
3954741 T-GG-----G-AAGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTGTG
* * *
3954765 TGGGCATTAGAAAGGTTGCCACCATCTTATG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTGTG
** * *
3954796 CAGGCTTTAGAAGGAGATGCCACCAACTTGTG
1 TGGGCTTTAGAAAG-GTTGCCACCAACTTGTG
* * * *
3954828 TGGGCTTTTGAAAGGGTTACCACCGACTTGCG
1 TGGGCTTTAGAAA-GGTTGCCACCAACTTGTG
** * *
3954860 TGGGCTTTTTAAAGGGGGTTGCCATCGACTTGTG
1 TGGGCTTTAGAAA---GGTTGCCACCAACTTGTG
*
3954894 TGGGCTTTAAAAATGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAAA-GGTTGCCACCAACTTGTG
* * * *
3954926 TGGGCTTTAGAAGGGTTGCCACTAGCTGGTG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTGTG
* * ** * *
3954957 TGGGCTTTAAGAAGGGTTACCACTGACTTATA
1 TGGGCTTT-AGAAAGGTTGCCACCAACTTGTG
* * *
3954989 TGGGCTTTCAGAAGGGTTGCCACCGACTTATG
1 TGGGCTTT-AGAAAGGTTGCCACCAACTTGTG
* * *
3955021 TGGG-TTTTGAAAAGGGGTTGTCA-TAGACTTGTG
1 TGGGCTTTAG-AAA--GGTTGCCACCA-ACTTGTG
* * *
3955054 TGGGCTTT-GAGAAGTGTTGCCACCGACTTATA
1 TGGGCTTTAGA-AAG-GTTGCCACCAACTTGTG
* * * *
3955086 TGGGCTTTTGAAAGAGATGCC-CCTATCTCGT-
1 TGGGCTTTAGAAAG-GTTGCCACC-AACTTGTG
* *
3955117 T-GGCTTTAAAAAGG-TGCCACTAACTTGTG
1 TGGGCTTTAGAAAGGTTGCCACCAACTTGTG
3955146 AGCTTTGAAA
Statistics
Matches: 579, Mismatches: 103, Indels: 79
0.76 0.14 0.10
Matches are distributed among these distances:
24 18 0.03
25 4 0.01
28 9 0.02
29 2 0.00
30 65 0.11
31 115 0.20
32 280 0.48
33 56 0.10
34 30 0.05
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (31 bp):
TGGGCTTTAGAAAGGTTGCCACCAACTTGTG
Found at i:3954559 original size:64 final size:62
Alignment explanation
Indices: 3954395--3955024 Score: 500
Period size: 63 Copynumber: 10.1 Consensus size: 62
3954385 CCAATGACAT
* * * * *
3954395 TGGGCTTT-GAAGGGTTGCCACCGACTTGTGTCGGCTTTAG-AGAAGGTTACCACCAACTTGTG
1 TGGGCTTTAGAA-GGTTGCCACCAACTTGTGTAGGCTTTAGAAGGA-GATGCCACCAACTTGTG
* * * * *
3954457 TGGGCTTTAAAAGAGTTGCCA-CTACTTGTGCAGGCTTTAGAAGGAGATGCCACTAACTTATG
1 TGGGCTTTAGAAG-GTTGCCACCAACTTGTGTAGGCTTTAGAAGGAGATGCCACCAACTTGTG
** * *
3954519 CAGGCTTTAGGGAAGGTTGCCACCAACTTGTGTGGGCTTTAGAAGG-GTTGCCACCAACTTGTG
1 TGGGCTTTA--GAAGGTTGCCACCAACTTGTGTAGGCTTTAGAAGGAGATGCCACCAACTTGTG
3954582 TGGGCTTTAGAAGGTTGCCACCAACTTGTGTAGGCTTTAGAAGGAGATGCCACCAACTTGTG
1 TGGGCTTTAGAAGGTTGCCACCAACTTGTGTAGGCTTTAGAAGGAGATGCCACCAACTTGTG
* * * * *
3954644 TGGGCTTTTAAGAGGGTTGCCACCGACTTGTGTAGGCTATT-GAAGAGGGTTGCCATCAACTTGT
1 TGGGC-TTT-AGAAGGTTGCCACCAACTTGTGTAGGCT-TTAGAAG-GAGATGCCACCAACTTGT
3954708 G
62 G
* * *
3954709 TGGGCTTTAAAAAGGGTTGCCACCAACTGGTGT-GG-----GAA-G-GTTGCCACCAACTTGTG
1 TGGGCTTT-AGAA-GGTTGCCACCAACTTGTGTAGGCTTTAGAAGGAGATGCCACCAACTTGTG
* * * *
3954765 TGGGCATTAGAAAGGTTGCCACCATCTTATGCAGGCTTTAGAAGGAGATGCCACCAACTTGTG
1 TGGGCTTTAG-AAGGTTGCCACCAACTTGTGTAGGCTTTAGAAGGAGATGCCACCAACTTGTG
* * * * * * * * *
3954828 TGGGCTTTTGAAAGGGTTACCACCGACTTGCGTGGGCTTTTTA-AAGGGGGTTGCCATCGACTTG
1 TGGGCTTTAG-AA-GGTTGCCACCAACTTGTGTAGGC--TTTAGAA-GGAGATGCCACCAACTTG
3954892 TG
61 TG
* * * * * *
3954894 TGGGCTTTAAAAATGGTTGCCACCAACTTGTGTGGGCTTTAGAAGG-GTTGCCACTAGCTGGTG
1 TGGGCTTT-AGAA-GGTTGCCACCAACTTGTGTAGGCTTTAGAAGGAGATGCCACCAACTTGTG
* ** * * * * * *
3954957 TGGGCTTTAAGAAGGGTTACCACTGACTTATATGGGCTTTCAGAAGG-GTTGCCACCGACTTATG
1 TGGGCTTT-AGAA-GGTTGCCACCAACTTGTGTAGGCTTT-AGAAGGAGATGCCACCAACTTGTG
3955021 TGGG
1 TGGG
3955025 TTTTGAAAAG
Statistics
Matches: 465, Mismatches: 75, Indels: 54
0.78 0.13 0.09
Matches are distributed among these distances:
55 16 0.03
56 27 0.06
57 1 0.00
59 3 0.01
61 37 0.08
62 67 0.14
63 115 0.25
64 105 0.23
65 44 0.09
66 50 0.11
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (62 bp):
TGGGCTTTAGAAGGTTGCCACCAACTTGTGTAGGCTTTAGAAGGAGATGCCACCAACTTGTG
Found at i:3954715 original size:97 final size:95
Alignment explanation
Indices: 3954395--3955093 Score: 516
Period size: 97 Copynumber: 7.4 Consensus size: 95
3954385 CCAATGACAT
* * * * *
3954395 TGGGCTTTG-A-AGGGTTGCCACCGACTTGTGTCGGCTTTAG-AGAAGGTTACCACCAACTTGTG
1 TGGGCTTTGAAGAGGGTTGCCACCAACTTATGTGGGCTTTAGAAGGA-GTTGCCACCAACTTGTG
* * *
3954457 TGGGCTTTAAAAGAGTTGCCA-CTACTTGTG
65 TGGGCTTTAAGAGGGTTGCCACCGACTTGTG
** * * * **
3954487 CAGGCTTTAGAAG-GAGATGCCACTAACTTATGCAGGCTTTAG--GGAAGGTTGCCACCAACTTG
1 TGGGCTTT-GAAGAGGGTTGCCACCAACTTATGTGGGCTTTAGAAGG-A-GTTGCCACCAACTTG
*
3954549 TGTGGGCTTT-AGAAGGGTTGCCACCAACTTGTG
63 TGTGGGCTTTAAG-AGGGTTGCCACCGACTTGTG
* * * *
3954582 TGGGCTTT--AGAAGGTTGCCACCAACTTGTGTAGGCTTTAGAAGGAGATGCCACCAACTTGTGT
1 TGGGCTTTGAAGAGGGTTGCCACCAACTTATGTGGGCTTTAGAAGGAGTTGCCACCAACTTGTGT
3954645 GGGCTTTTAAGAGGGTTGCCACCGACTTGTG
66 GGGC-TTTAAGAGGGTTGCCACCGACTTGTG
* * * * *
3954676 TAGGCTATTGAAGAGGGTTGCCATCAACTTGTGTGGGCTTTAAAAAGG-GTTGCCACCAACTGGT
1 TGGGCT-TTGAAGAGGGTTGCCACCAACTTATGTGGGCTTT-AGAAGGAGTTGCCACCAACTTGT
*
3954740 GTGGG-----A-A-GGTTGCCACCAACTTGTG
64 GTGGGCTTTAAGAGGGTTGCCACCGACTTGTG
* * ** *
3954765 TGGGCATTAGAA-A-GGTTGCCACCATCTTATGCAGGCTTTAGAAGGAGATGCCACCAACTTGTG
1 TGGGC-TTTGAAGAGGGTTGCCACCAACTTATGTGGGCTTTAGAAGGAGTTGCCACCAACTTGTG
* *
3954828 TGGGCTTTTGAA-AGGGTTACCACCGACTTGCG
65 TGGGC-TTT-AAGAGGGTTGCCACCGACTTGTG
* * * * * * *
3954860 TGGGCTTTTTAAAGGGGGTTGCCATCGACTTGTGTGGGCTTTAAAAATG-GTTGCCACCAACTTG
1 TGGGC--TTTGAAGAGGGTTGCCACCAACTTATGTGGGCTTT-AGAAGGAGTTGCCACCAACTTG
* *
3954924 TGTGGGCTTT-AGAAGGGTTGCCA-CTAGCTGGTG
63 TGTGGGCTTTAAG-AGGGTTGCCACCGA-CTTGTG
* ** * * *
3954957 TGGGCTTT-AAGAAGGGTTACCACTGACTTATATGGGCTTTCAGAAGG-GTTGCCACCGACTTAT
1 TGGGCTTTGAAG-AGGGTTGCCACCAACTTATGTGGGCTTT-AGAAGGAGTTGCCACCAACTTGT
* * * **
3955020 GTGGGTTTTGAAAAGGGGTTGTCATAGACTTGTG
64 GTGGGCTTT-AAGA-GGGTTGCCACCGACTTGTG
* * *
3955054 TGGGCTTTG-AGAAGTGTTGCCACCGACTTATATGGGCTTT
1 TGGGCTTTGAAG-AGGGTTGCCACCAACTTATGTGGGCTTT
3955094 TGAAAGAGAT
Statistics
Matches: 487, Mismatches: 82, Indels: 71
0.76 0.13 0.11
Matches are distributed among these distances:
86 5 0.01
87 40 0.08
88 1 0.00
89 25 0.05
90 2 0.00
91 1 0.00
92 8 0.02
93 47 0.10
94 91 0.19
95 92 0.19
96 7 0.01
97 117 0.24
98 47 0.10
99 4 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.29
Consensus pattern (95 bp):
TGGGCTTTGAAGAGGGTTGCCACCAACTTATGTGGGCTTTAGAAGGAGTTGCCACCAACTTGTGT
GGGCTTTAAGAGGGTTGCCACCGACTTGTG
Found at i:3954753 original size:24 final size:24
Alignment explanation
Indices: 3954723--3954768 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
3954713 CTTTAAAAAG
3954723 GGTTGCCACCAACTGGTGTGGGAA
1 GGTTGCCACCAACTGGTGTGGGAA
*
3954747 GGTTGCCACCAACTTGTGTGGG
1 GGTTGCCACCAACTGGTGTGGG
3954769 CATTAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.17, C:0.22, G:0.37, T:0.24
Consensus pattern (24 bp):
GGTTGCCACCAACTGGTGTGGGAA
Found at i:3954811 original size:184 final size:180
Alignment explanation
Indices: 3954444--3954929 Score: 591
Period size: 184 Copynumber: 2.6 Consensus size: 180
3954434 GAGAAGGTTA
* * * * * *
3954444 CCACCAACTTGTGTGGGCTTTAAAAGAGTTGCCA-CTACTTGTGCAGGCTTTAGAAGGAGATGCC
1 CCACCAACTTGTGTGGGCTTTTAAAGGGTTGCCACCGACTTGTGTAGGCTTT-GAAGGGGTTGCC
* ** **
3954508 A-CTAACTTATGCAGGCTTTAGGGAAGGTTGCCACCAACTTGTGTGGGCTTTAGAAGGGTTGCCA
65 ATC-AACTTGTGTGGGCTTTA-AAAAGGTTGCCACCAACTTGTGT-GG-----GAAGGGTTGCCA
* * *
3954572 CCAACTTGTGTGGGCTTTAGAAGGTTGCCACCAACTTGTGTAGGCTTTAGAAGGAGATG
122 CCAACTTGTGTGGGCATTAGAAGGTTGCCACCAACTTATGCAGGCTTTAGAAGGAGATG
3954631 CCACCAACTTGTGTGGGCTTTTAAGAGGGTTGCCACCGACTTGTGTAGGCTATTGAAGAGGGTTG
1 CCACCAACTTGTGTGGGCTTTTAA-AGGGTTGCCACCGACTTGTGTAGGCT-TTGAAG-GGGTTG
*
3954696 CCATCAACTTGTGTGGGCTTTAAAAAGGGTTGCCACCAACTGGTGTGGGAA-GGTTGCCACCAAC
63 CCATCAACTTGTGTGGGCTTTAAAAA-GGTTGCCACCAACTTGTGTGGGAAGGGTTGCCACCAAC
*
3954760 TTGTGTGGGCATTAGAAAGGTTGCCACCATCTTATGCAGGCTTTAGAAGGAGATG
127 TTGTGTGGGCATTAG-AAGGTTGCCACCAACTTATGCAGGCTTTAGAAGGAGATG
* * * *
3954815 CCACCAACTTGTGTGGGCTTTTGAAAGGGTTACCACCGACTTGCGTGGGCTTTTTAAAGGGGGTT
1 CCACCAACTTGTGTGGGCTTTT-AAAGGGTTGCCACCGACTTGTGTAGGC--TTTGAA-GGGGTT
*
3954880 GCCATCGACTTGTGTGGGCTTTAAAAATGGTTGCCACCAACTTGTGTGGG
62 GCCATCAACTTGTGTGGGCTTTAAAAA-GGTTGCCACCAACTTGTGTGGG
3954930 CTTTAGAAGG
Statistics
Matches: 265, Mismatches: 23, Indels: 24
0.85 0.07 0.08
Matches are distributed among these distances:
183 27 0.10
184 83 0.31
185 58 0.22
186 2 0.01
187 23 0.09
188 9 0.03
189 21 0.08
190 41 0.15
191 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (180 bp):
CCACCAACTTGTGTGGGCTTTTAAAGGGTTGCCACCGACTTGTGTAGGCTTTGAAGGGGTTGCCA
TCAACTTGTGTGGGCTTTAAAAAGGTTGCCACCAACTTGTGTGGGAAGGGTTGCCACCAACTTGT
GTGGGCATTAGAAGGTTGCCACCAACTTATGCAGGCTTTAGAAGGAGATG
Found at i:3954817 original size:87 final size:89
Alignment explanation
Indices: 3954658--3954831 Score: 212
Period size: 87 Copynumber: 2.0 Consensus size: 89
3954648 CTTTTAAGAG
* * * **
3954658 GGTTGCCACCGACTTGTGTAGGCTATTGAAGAGGGTTGCCATCAACTTGTGTGGGCTTTAAAAAG
1 GGTTGCCACCAACTTGTGTAGGCTATTGAAGAGGGTTGCCACCAACTTATGCAGGCTTTAAAAAG
*
3954723 GGTTGCCACCAACTGGTGTGGGAA
66 GGATGCCACCAACTGGTGTGGGAA
* * *
3954747 GGTTGCCACCAACTTGTGTGGGC-ATTAGAA-A-GGTTGCCACCATCTTATGCAGGCTTT-AGAA
1 GGTTGCCACCAACTTGTGTAGGCTATT-GAAGAGGGTTGCCACCAACTTATGCAGGCTTTAAAAA
*
3954808 GGAGATGCCACCAACTTGTGTGGG
65 GG-GATGCCACCAACTGGTGTGGG
3954832 CTTTTGAAAG
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
86 5 0.07
87 40 0.55
88 4 0.05
89 24 0.33
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (89 bp):
GGTTGCCACCAACTTGTGTAGGCTATTGAAGAGGGTTGCCACCAACTTATGCAGGCTTTAAAAAG
GGATGCCACCAACTGGTGTGGGAA
Found at i:3954863 original size:119 final size:121
Alignment explanation
Indices: 3954629--3954863 Score: 291
Period size: 119 Copynumber: 2.0 Consensus size: 121
3954619 TAGAAGGAGA
* * * * * *
3954629 TGCCACCAACTTGTGTGGGCTTTTAAGAGGGTTGCCACCGACTTGTGTAGGCTATTGAAGAGGGT
1 TGCCACCAACTTGTGTGGGCTATTAAGAAGGTTGCCACCGACTTATGCAGGCTATTGAAGAGAGA
* * *
3954694 TGCCATCAACTTGTGTGGGCTTTAAAAAGGGTTGCCACCAACTGGTGTGGGAAGGT
66 TGCCACCAACTTGTGTGGGCTTTAAAAAGGGTTACCACCAACTGGCGTGGGAAGGT
3954750 TGCCACCAACTTGTGTGGGC-ATT-AGAAAGGTTGCCACC-ATCTTATGCAGGCT-TTAGAAG-G
1 TGCCACCAACTTGTGTGGGCTATTAAG-AAGGTTGCCACCGA-CTTATGCAGGCTATT-GAAGAG
** * *
3954810 AGATGCCACCAACTTGTGTGGGCTTTTGAAAGGGTTACCACCGACTTGCGTGGG
63 AGATGCCACCAACTTGTGTGGGCTTTAAAAAGGGTTACCACCAACTGGCGTGGG
3954864 CTTTTTAAAG
Statistics
Matches: 98, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
119 51 0.52
120 27 0.28
121 20 0.20
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.27
Consensus pattern (121 bp):
TGCCACCAACTTGTGTGGGCTATTAAGAAGGTTGCCACCGACTTATGCAGGCTATTGAAGAGAGA
TGCCACCAACTTGTGTGGGCTTTAAAAAGGGTTACCACCAACTGGCGTGGGAAGGT
Found at i:3954977 original size:129 final size:126
Alignment explanation
Indices: 3954407--3955077 Score: 473
Period size: 129 Copynumber: 5.3 Consensus size: 126
3954397 GGCTTTGAAG
* * * * * *
3954407 GGTTGCCACCGACTTGTGTCGGCTTTAGAGAAGGTTACCACCAACTTGTGTGGGCTTTA-AAAGA
1 GGTTGCCACCAACTTGTGTGGGCTTTAGA-AGGGTTGCCACCAACTGGTGTGGGCTTTAGAAAGG
* * * * ** * ** **
3954471 GTTGCCA-CTACTT--GTGCAGGCTTT-AGAAGGAGATGCCACTAACTTATGCAGGCTTTAGGGA
65 GTTACCACCGACTTACATG--GGCTTTCAGAAGG-GTTGCCACCGACTTGTGTGGGCTTTA-AAA
3954532 A
126 A
*
3954533 GGTTGCCACCAACTTGTGTGGGCTTTAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAG-AA-GG
1 GGTTGCCACCAACTTGTGTGGGCTTTAGAAGGGTTGCCACCAACTGGTGTGGGCTTTAGAAAGGG
* * *** * * * * *
3954596 TTGCCACCAACTTGTGTAGGCTTT-AGAAGGAGATGCCACCAACTTGTGTGGGCTTTTAAGAG
66 TTACCACCGACTTACATGGGCTTTCAGAAGG-GTTGCCACCGACTTGTGTGGGC-TTTAAAAA
* * * * *
3954658 GGTTGCCACCGACTTGTGTAGGCTATT-GAAGAGGGTTGCCATCAACTTGTGTGGGCTTTAAAAA
1 GGTTGCCACCAACTTGTGTGGGCT-TTAG-A-AGGGTTGCCACCAACTGGTGTGGGCTTTAGAAA
* * ** * * *
3954722 GGGTTGCCACC-A---AC-T-GG-TGTGGGAA-GGTTGCCACCAACTTGTGTGGGCATTAGAAA
63 GGGTTACCACCGACTTACATGGGCTTTCAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAAAAA
* * ** * * *
3954778 GGTTGCCACCATCTTATGCAGGCTTTAGAAGGAGATGCCACCAACTTGTGTGGGCTTTTGAAAGG
1 GGTTGCCACCAACTTGTGTGGGCTTTAGAAGG-GTTGCCACCAACTGGTGTGGGCTTTAGAAAGG
* * * *
3954843 GTTACCACCGACTTGCGTGGGCTTTTTA-AAGGGGGTTGCCATCGACTTGTGTGGGCTTTAAAAA
65 GTTACCACCGACTTACATGGGC-TTTCAGAA--GGGTTGCCACCGACTTGTGTGGGCTTTAAAAA
* *
3954907 TGGTTGCCACCAACTTGTGTGGGCTTTAGAAGGGTTGCCACTAGCTGGTGTGGGCTTTA-AGAAG
1 -GGTTGCCACCAACTTGTGTGGGCTTTAGAAGGGTTGCCACCAACTGGTGTGGGCTTTAGA-AAG
* * * * *
3954971 GGTTACCACTGACTTATATGGGCTTTCAGAAGGGTTGCCACCGACTTATGTGGGTTTTGAAAAGG
64 GGTTACCACCGACTTACATGGGCTTTCAGAAGGGTTGCCACCGACTTGTGTGGGCTTT-AAAA-A
* * *
3955036 GGTTGTCA-TAGACTTGTGTGGGCTTTGAGAAGTGTTGCCACC
1 GGTTGCCACCA-ACTTGTGTGGGCTTT-AGAAGGGTTGCCACC
3955078 GACTTATATG
Statistics
Matches: 449, Mismatches: 65, Indels: 59
0.78 0.11 0.10
Matches are distributed among these distances:
118 3 0.01
119 39 0.09
120 26 0.06
121 21 0.05
122 3 0.01
123 6 0.01
124 9 0.02
125 92 0.20
126 36 0.08
127 57 0.13
128 34 0.08
129 95 0.21
130 28 0.06
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (126 bp):
GGTTGCCACCAACTTGTGTGGGCTTTAGAAGGGTTGCCACCAACTGGTGTGGGCTTTAGAAAGGG
TTACCACCGACTTACATGGGCTTTCAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAAAAA
Found at i:3955150 original size:28 final size:28
Alignment explanation
Indices: 3955118--3955817 Score: 535
Period size: 28 Copynumber: 24.5 Consensus size: 28
3955108 CTATCTCGTT
* *
3955118 GGCTTTAAAAAGGTGCCACTAACTTGTG
1 GGCTTTGAAAAGGTGCCACTGACTTGTG
* **
3955146 AGCTTTGAAAAGAAGCCACTGACTTGTG
1 GGCTTTGAAAAGGTGCCACTGACTTGTG
* *
3955174 GGCTTTG-AAAGGATGCCACGGACTTGTA
1 GGCTTTGAAAAGG-TGCCACTGACTTGTG
*
3955202 GGCTTTTAAAAGGATGCCACTGACTTGTG
1 GGCTTTGAAAAGG-TGCCACTGACTTGTG
*
3955231 GGCTTTTG-AAGGGATGCCACTGACTTGTG
1 GGC-TTTGAAAAGG-TGCCACTGACTTGTG
* *
3955260 GGCTTTTGAAAAGATGCCACTAACTTGTG
1 GGC-TTTGAAAAGGTGCCACTGACTTGTG
* * *
3955289 GGCTTTGAGAAGGGTGCCGCTGGCTTGTG
1 GGCTTTGA-AAAGGTGCCACTGACTTGTG
* *
3955318 GGCTTTGAAAGGGTGCCACT-AGCTTATG
1 GGCTTTGAAAAGGTGCCACTGA-CTTGTG
* * * *
3955346 GGCTTTGAAAGGGTGCCAATGGCTTATG
1 GGCTTTGAAAAGGTGCCACTGACTTGTG
* * * *
3955374 GACTTTGAGAGGGTGCCACTAACTTGTG
1 GGCTTTGAAAAGGTGCCACTGACTTGTG
* *
3955402 GGCTTTGGAAAGGGATGCCACTGACTCGTG
1 GGCTTT-GAAAAGG-TGCCACTGACTTGTG
* * *
3955432 GGCTTTTAAAAGAATGCCACTAACTTGTG
1 GGCTTTGAAAAG-GTGCCACTGACTTGTG
*
3955461 GGCTTTGAAAGGGTGCCACT-AGCTTGTG
1 GGCTTTGAAAAGGTGCCACTGA-CTTGTG
* *
3955489 GGCTTTG-AAAGGATGCCACTGATTTGTA
1 GGCTTTGAAAAGG-TGCCACTGACTTGTG
* *
3955517 GGCTTTG-AAAGAGTGCCA-TAAACTCGTG
1 GGCTTTGAAAAG-GTGCCACT-GACTTGTG
* * * ***
3955545 GGCTCTGAAAAGGGATACCCCTGACTCACG
1 GGCTTTGAAAA-GG-TGCCACTGACTTGTG
* *
3955575 GGCTTTAAAAAGAG-GCCACTAACTTGTG
1 GGCTTTGAAAAG-GTGCCACTGACTTGTG
* *
3955603 GGCTTT-AAAAGGAGGCCACTAACTTGTG
1 GGCTTTGAAAAGG-TGCCACTGACTTGTG
*
3955631 GGCTTTTG-AAAGGAGGCCACTGACTTGTG
1 GGC-TTTGAAAAGG-TGCCACTGACTTGTG
* * *
3955660 GGCTTTGAAAGGGTGCCACTGGCTTATG
1 GGCTTTGAAAAGGTGCCACTGACTTGTG
* * * *
3955688 GGCCTTGAAAGGGATGCCACTAACTCGTG
1 GGCTTTGAAAAGG-TGCCACTGACTTGTG
* *
3955717 AGCTTT-AGAAGGATGCCACTGACTTGTG
1 GGCTTTGAAAAGG-TGCCACTGACTTGTG
* *
3955745 GGCTTTTG-AAGGGATGCCACTAACTTGTG
1 GGC-TTTGAAAAGG-TGCCACTGACTTGTG
* *
3955774 GGCTTTGAGAAGGGTTGCCATTGACTTGTGTG
1 GGCTTTGA-AAAGG-TGCCACTGAC-T-TGTG
3955806 GGCTTT-AAAAGG
1 GGCTTTGAAAAGG
3955818 GAGCCATCGA
Statistics
Matches: 549, Mismatches: 91, Indels: 62
0.78 0.13 0.09
Matches are distributed among these distances:
26 1 0.00
27 15 0.03
28 260 0.47
29 199 0.36
30 61 0.11
31 3 0.01
32 10 0.02
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCTTTGAAAAGGTGCCACTGACTTGTG
Found at i:3955285 original size:143 final size:140
Alignment explanation
Indices: 3955086--3955803 Score: 624
Period size: 143 Copynumber: 5.0 Consensus size: 140
3955076 CCGACTTATA
* * * * * * * * *
3955086 TGGGCTTTTGAAAGAGATGCCCCTATCTCGTTGGCTTTAAAAAGGTGCCACTAACTTGTGAGCTT
1 TGGGC-TTTG-AAGGGATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACTCGTGGGCTT
* * *
3955151 TGAAAAGAAGCCACTGACTTGTGGGCTTTGAAAGGATGCCACGGACTTGTAGGCTTTTAAAAGGA
64 TGAAAAGAAGCCACTGACTTGTGGGCTTTGAAAGGATGCCAC-AACTTGTGGGCTTTTGAAAGGA
3955216 TGCCACTGACTTG
128 TGCCACTGACTTG
* *
3955229 TGGGCTTTTGAAGGGATGCCACTGACTTGTGGGCTTTTGAAAAGATGCCACTAACTTGTGGGCTT
1 TGGGC-TTTGAAGGGATGCCACTAACTTGTGGGC-TTTGAAAAGATGCCACTAACTCGTGGGCTT
* ** * * * * *
3955294 TGAGAAGGGTGCCGCTGGCTTGTGGGCTTTGAAAGGGTGCCACTAGCTTATGGGC-TTTGAAAGG
64 TGA-AAAGAAGCCACTGACTTGTGGGCTTTGAAAGGATGCCAC-AACTTGTGGGCTTTTGAAAGG
* * * *
3955358 GTGCCAATGGCTTA
127 ATGCCACTGACTTG
* * *
3955372 TGGACTTTGAGAGGG-TGCCACTAACTTGTGGGCTTTGGAAAGGGATGCCACTGACTCGTGGGCT
1 TGGGCTTTGA-AGGGATGCCACTAACTTGTGGGCTTT-GAAA-AGATGCCACTAACTCGTGGGCT
* * * *
3955436 TTTAAAAGAATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAGCTTGTGGGC-TTTGAAAG
63 TTGAAAAGAA-GCCACTGACTTGTGGGCTTTGAAAGGATGCCAC-AACTTGTGGGCTTTTGAAAG
*
3955500 GATGCCACTGATTTG
126 GATGCCACTGACTTG
* * * * * * * **
3955515 TAGGCTTTGAA-AGAGTGCCA-TAAACTCGTGGGCTCTGAAAAGGGATACCCCTGACTCACGGGC
1 TGGGCTTTGAAGGGA-TGCCACT-AACTTGTGGGCTTTGAAAA--GATGCCACTAACTCGTGGGC
* * * * *
3955578 TTTAAAAAGAGGCCACTAACTTGTGGGCTTTAAAAGGAGGCCACTAACTTGTGGGCTTTTGAAAG
62 TTTGAAAAGAAGCCACTGACTTGTGGGCTTTGAAAGGATGCCAC-AACTTGTGGGCTTTTGAAAG
*
3955643 GAGGCCACTGACTTG
126 GATGCCACTGACTTG
** * * * *
3955658 TGGGCTTTGAAAGGG-TGCCACTGGCTTATGGGCCTTGAAAGGGATGCCACTAACTCGTGAGCTT
1 TGGGCTTTG-AAGGGATGCCACTAACTTGTGGGCTTTGAAA-AGATGCCACTAACTCGTGGGCTT
* * *
3955722 T-AGAAGGATGCCACTGACTTGTGGGCTTTTGAAGGGATGCCACTAACTTGTGGGC-TTTGAGAA
64 TGA-AAAGAAGCCACTGACTTGTGGGC-TTTGAAAGGATGCCAC-AACTTGTGGGCTTTTGA-AA
* *
3955785 GGGTTGCCATTGACTTG
125 -GGATGCCACTGACTTG
3955802 TG
1 TG
3955804 TGGGCTTTAA
Statistics
Matches: 470, Mismatches: 85, Indels: 39
0.79 0.14 0.07
Matches are distributed among these distances:
141 5 0.01
142 136 0.29
143 270 0.57
144 58 0.12
145 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (140 bp):
TGGGCTTTGAAGGGATGCCACTAACTTGTGGGCTTTGAAAAGATGCCACTAACTCGTGGGCTTTG
AAAAGAAGCCACTGACTTGTGGGCTTTGAAAGGATGCCACAACTTGTGGGCTTTTGAAAGGATGC
CACTGACTTG
Found at i:3955508 original size:171 final size:168
Alignment explanation
Indices: 3955086--3955779 Score: 686
Period size: 171 Copynumber: 4.0 Consensus size: 168
3955076 CCGACTTATA
* * * * * * * * *
3955086 TGGGCTTTTGAAAGAGATGCCCCTATCTCGTTGGCTTTAAAAAGGTGCCACTAACTTGTGAGCTT
1 TGGGCTTTTAAAAGA-ATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAGCTTGTGGGCTT
* * * * ** * *
3955151 TGAAAAGAAGCCACTGACTTGTGGGCTTTGAAAGGATGCCACGGACTTGTAGG-CTTTTAAAAGG
65 TGAAAGGATGCCACTG-CTTATGGGCTTTGAAAGGGTGCCA-TAACTCGT-GGAC-TTTGAAAGG
*
3955215 ATGCCACTGACTTGTGGGCTTTTGAAGGGATGCCACTGACTTG
126 ATGCCACTGACTTGTGGGCTTTTGAAGGGATGCCACTAACTTG
* *
3955258 TGGGCTTTTGAAAAG-ATGCCACTAACTTGTGGGCTTTGAGAAGGGTGCCGCTGGCTTGTGGGCT
1 TGGGCTTTT-AAAAGAATGCCACTAACTTGTGGGCTTTGA-AAGGGTGCCACTAGCTTGTGGGCT
* ** ** * *
3955322 TTGAAAGGGTGCCACTAGCTTATGGGCTTTGAAAGGGTGCCAATGGCTTATGGACTTTGAGAGGG
64 TTGAAAGGATGCCACT-GCTTATGGGCTTTGAAAGGGTGCC-ATAACTCGTGGACTTTGAAAGGA
* * * *
3955387 TGCCACTAACTTGTGGGCTTTGGAAAGGGATGCCACTGACTCG
127 TGCCACTGACTTGTGGGCTTTTG-AAGGGATGCCACTAACTTG
3955430 TGGGCTTTTAAAAGAATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAGCTTGTGGGCTTT
1 TGGGCTTTTAAAAGAATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAGCTTGTGGGCTTT
* * * *
3955495 GAAAGGATGCCACTGATT-TGTAGGCTTTGAAAGAGTGCCATAAACTCGTGGGCTCTGAAAAGGG
66 GAAAGGATGCCACTGCTTATG--GGCTTTGAAAGGGTGCCAT-AACTCGTGGACTTTG-AAA-GG
* * *** * ** *
3955559 ATACCCCTGACTCACGGGC-TTTAAAAAGAGGCCACTAACTTG
126 ATGCCACTGACTTGTGGGCTTTTGAAGGGATGCCACTAACTTG
* *
3955601 TGGGC-TTTAAAAGGAGGCCACTAACTTGTGGGCTTTTGAAAGGAG-GCCACT-GACTTGTGGGC
1 TGGGCTTTTAAAAGAATGCCACTAACTTGTGGGC-TTTGAAAGG-GTGCCACTAG-CTTGTGGGC
* *
3955663 TTTGAAAGGGTGCCACTGGCTTATGGGCCTTGAAAGGGATGCCACTAACTCGT-GAGCTTT-AGA
63 TTTGAAAGGATGCCACT-GCTTATGGGCTTTGAAAGGG-TGCCA-TAACTCGTGGA-CTTTGA-A
3955726 AGGATGCCACTGACTTGTGGGCTTTTGAAGGGATGCCACTAACTTG
123 AGGATGCCACTGACTTGTGGGCTTTTGAAGGGATGCCACTAACTTG
3955772 TGGGCTTT
1 TGGGCTTT
3955780 GAGAAGGGTT
Statistics
Matches: 431, Mismatches: 68, Indels: 46
0.79 0.12 0.08
Matches are distributed among these distances:
169 2 0.00
170 49 0.11
171 213 0.49
172 144 0.33
173 23 0.05
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (168 bp):
TGGGCTTTTAAAAGAATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAGCTTGTGGGCTTT
GAAAGGATGCCACTGCTTATGGGCTTTGAAAGGGTGCCATAACTCGTGGACTTTGAAAGGATGCC
ACTGACTTGTGGGCTTTTGAAGGGATGCCACTAACTTG
Found at i:3955824 original size:30 final size:31
Alignment explanation
Indices: 3955770--3955904 Score: 94
Period size: 32 Copynumber: 4.3 Consensus size: 31
3955760 GCCACTAACT
* * * *
3955770 TGTGGGCTTTGAGAAGGGTTGCCATTGACTTG
1 TGTGGGCTTT-AAAAGGGTAGCCATCGACTTC
3955802 TGTGGGCTTTAAAAGGG-AGCCATCGACTTC
1 TGTGGGCTTTAAAAGGGTAGCCATCGACTTC
* * * * * *
3955832 TATGGGCCTTAAAAGGGTTGCC-CCCAGCTTG
1 TGTGGGCTTTAAAAGGGTAGCCATCGA-CTTC
* * * * *
3955863 TGTAGGCTTTGAGAAGGGTTGCCACCAACTTC
1 TGTGGGCTTT-AAAAGGGTAGCCATCGACTTC
3955895 TGTGGGCTTT
1 TGTGGGCTTT
3955905 TGGAAAAAGA
Statistics
Matches: 82, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
30 27 0.33
31 19 0.23
32 33 0.40
33 3 0.04
ACGTcount: A:0.19, C:0.19, G:0.32, T:0.30
Consensus pattern (31 bp):
TGTGGGCTTTAAAAGGGTAGCCATCGACTTC
Found at i:3960307 original size:52 final size:52
Alignment explanation
Indices: 3960206--3960312 Score: 133
Period size: 52 Copynumber: 2.1 Consensus size: 52
3960196 CTTGAGAAGA
* * * * ** *
3960206 ATGATAAAGGTGCCAATATGCTTATTCAATGCCTATGATTTTAGGCTTAAAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGACGTTAGACTTAAAG
* *
3960258 ATGATCAAGGTGCCAATGTGCTGATTCAAGGCCAACGACGTTAGACTTAAAG
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGACGTTAGACTTAAAG
3960310 ATG
1 ATG
3960313 TGAAGAATGA
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (52 bp):
ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGACGTTAGACTTAAAG
Found at i:3960395 original size:62 final size:62
Alignment explanation
Indices: 3960258--3960533 Score: 233
Period size: 62 Copynumber: 4.5 Consensus size: 62
3960248 AGGCTTAAAG
* * * *
3960258 ATGATCAAGGTGCCAATGTGCTGATTCAAGGCCAACGACGT-TAGACTT-AAAGATG-TGAAGA
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGACATCGAG-CTTGAAAGATGAT-AAGA
** * * * *
3960319 ATGATAAAAATGCCAATATGCTGATTCACGGCCAGCGATATCAAGCTTGAAAGATGATAAGA
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGACATCGAGCTTGAAAGATGATAAGA
* * * * * * * * *
3960381 ACGATAAAGGTGCCAATATGCTAATTCAAGGTCAGCGATATTGGGCTTGAAAGA-AAAAAGA
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGACATCGAGCTTGAAAGATGATAAGA
* * * * * * *
3960442 TTTGACAAA--TGCCAATGTGTTGATTCAAGGCCAACGACATCGGGCTTG-AAGATGAGAAAA
1 -ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGACATCGAGCTTGAAAGATGATAAGA
*
3960502 ATGATAAAGGTGCCAATATGCTCATTCAAGGC
1 ATGATAAAGGTGCCAATATGCTGATTCAAGGC
3960534 TAGTGTTATT
Statistics
Matches: 170, Mismatches: 38, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
59 10 0.06
60 36 0.21
61 60 0.35
62 63 0.37
63 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (62 bp):
ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAACGACATCGAGCTTGAAAGATGATAAGA
Found at i:3960544 original size:121 final size:121
Alignment explanation
Indices: 3960326--3960554 Score: 300
Period size: 121 Copynumber: 1.9 Consensus size: 121
3960316 AGAATGATAA
* * * * *
3960326 AAATGCCAATATGCTGATTCACGGCCAGCGATATCAAGCTTGAAAGATGATAAGAACGATAAAGG
1 AAATGCCAATATGCTGATTCAAGGCCAACGACATCAAGCTTGAAAGATGAGAAAAACGATAAAGG
*
3960391 TGCCAATATGCTAATTCAAGGTCAGCGATATTGGGCTTGAAAGAAAAAAGATTTGAC
66 TGCCAATATGCTAATTCAAGGTCAGCGATATTGGACTT-AAAGAAAAAAGATTTGAC
* * ** *
3960448 AAATGCCAATGTGTTGATTCAAGGCCAACGACATCGGGCTTG-AAGATGAGAAAAATGATAAAGG
1 AAATGCCAATATGCTGATTCAAGGCCAACGACATCAAGCTTGAAAGATGAGAAAAACGATAAAGG
* * *
3960512 TGCCAATATGCTCATTCAAGG-CTAGTGTTATTGGACTTAAAGA
66 TGCCAATATGCTAATTCAAGGTC-AGCGATATTGGACTTAAAGA
3960555 TGATAAGGAT
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
120 6 0.07
121 51 0.55
122 35 0.38
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (121 bp):
AAATGCCAATATGCTGATTCAAGGCCAACGACATCAAGCTTGAAAGATGAGAAAAACGATAAAGG
TGCCAATATGCTAATTCAAGGTCAGCGATATTGGACTTAAAGAAAAAAGATTTGAC
Found at i:3960812 original size:64 final size:63
Alignment explanation
Indices: 3960720--3961184 Score: 459
Period size: 64 Copynumber: 7.3 Consensus size: 63
3960710 GACATTAGGC
* * *
3960720 TTAGAAGGGTTGCCACCGACTTGCGTGGGCTTTAGAGAAGGTTGCCACCAACTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGTTGCCACCGACTTGTGTGGGCT
* * * *
3960783 TTAGAAGGAGATGCCACCAACTTATGTGGGCTTTAGAGAAAGTTGCCACCAACTTGTGTGGGCT
1 TTAGAAGG-GTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGTTGCCACCGACTTGTGTGGGCT
* * * * * * * * * *
3960847 TTAGAAGGGTTGTCACCAGCTTATGTAGGTTTTAGAAAAAGATGCCACCAACTTGTATGGGCT
1 TTAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGTTGCCACCGACTTGTGTGGGCT
* * * *
3960910 TTTGAGAGGGTTGCCACCAACTTGTGTGGGCTTTTAAAGGAGGTTGCCACCGACTTGTGTGGACT
1 TTAGA-AGGGTTGCCACCAACTTGTGTGGGC-TTTAGAGAAGGTTGCCACCGACTTGTGTGGGCT
* * * * * * * *
3960975 TTGAGAAAGGTTACCCGCCAACTTGTGTAGGCTTTAAAG-GGGTTGCCATCGTCTTGTGTGGGCT
1 TT-AGAAGGGTT-GCCACCAACTTGTGTGGGCTTTAGAGAAGGTTGCCACCGACTTGTGTGGGCT
** * * ** *
3961039 TTGAGAAGGGTTGCCACTGACTTGTGTGGGCTTT-GAGAGGGGTTGACATTGGCTTGTGTGGGCT
1 TT-AGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGA-AGGTTGCCACCGACTTGTGTGGGCT
*
3961103 TTGAGAAGGGTTTGCCACTAACTTGTGTGGGCTTT-GAGAAGGGTTGCCACCGACTTGTGTGGGC
1 TT-AGAAGGG-TTGCCACCAACTTGTGTGGGCTTTAGAGAA-GGTTGCCACCGACTTGTGTGGGC
3961167 T
63 T
* *
3961168 TTTGAAAGGGATGCCAC
1 TTAG-AAGGGTTGCCAC
3961185 TGACTTATAG
Statistics
Matches: 338, Mismatches: 54, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
62 2 0.01
63 76 0.22
64 149 0.44
65 93 0.28
66 18 0.05
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (63 bp):
TTAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGTTGCCACCGACTTGTGTGGGCT
Found at i:3960890 original size:95 final size:96
Alignment explanation
Indices: 3960728--3960982 Score: 298
Period size: 95 Copynumber: 2.6 Consensus size: 96
3960718 GCTTAGAAGG
* * * * **
3960728 GTTGCCACCGACTTGCGTGGGCTTTAGAGAAGGTTGCCACCAACTTGTGTGGGCTTTAGAAGGAG
1 GTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGTTGCCACCAACTTATGTAGGCTTTAGAAAAAG
*
3960793 ATGCCACCAACTTATGTGGGCTTTAGAGAAA
66 ATGCCACCAACTTATATGGGCTTTAGAGAAA
* * * *
3960824 GTTGCCACCAACTTGTGTGGGCTTTAGA-AGGGTTGTCACCAGCTTATGTAGGTTTTAGAAAAAG
1 GTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGTTGCCACCAACTTATGTAGGCTTTAGAAAAAG
* * **
3960888 ATGCCACCAACTTGTATGGGCTTTTGAGAGG
66 ATGCCACCAACTTATATGGGCTTTAGAGAAA
* * * *
3960919 GTTGCCACCAACTTGTGTGGGCTTTTAAAGGAGGTTGCCACCGACTTGTGT-GGACTTTGAGAAA
1 GTTGCCACCAACTTGTGTGGGC-TTTAGAGAAGGTTGCCACCAACTTATGTAGG-CTTT-AGAAA
3960983 GGTTACCCGC
Statistics
Matches: 132, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
95 76 0.58
96 33 0.25
97 18 0.14
98 5 0.04
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (96 bp):
GTTGCCACCAACTTGTGTGGGCTTTAGAGAAGGTTGCCACCAACTTATGTAGGCTTTAGAAAAAG
ATGCCACCAACTTATATGGGCTTTAGAGAAA
Found at i:3961112 original size:97 final size:94
Alignment explanation
Indices: 3960917--3961169 Score: 280
Period size: 97 Copynumber: 2.6 Consensus size: 94
3960907 GCTTTTGAGA
* * *
3960917 GGGTTGCCACCAACTTGTGTGGGCTTTTA-AAGGAGGTTGCCACCGACTTGTGTGGACTTTGAGA
1 GGGTTGCCA-CTACTTGTGTGGGCTTTGAGAA-G-GGTTGCCACCGACTTGTGTGGGCTTTGAGA
** ** *
3960981 AAGGTT-AC-CCGCCAACTTGTGTAGGCTTTAAAG
63 GGGGTTGACATTG---GCTTGTGTAGGCTTTAAAG
*
3961014 GGGTTGCCATCGT-CTTGTGTGGGCTTTGAGAAGGGTTGCCACTGACTTGTGTGGGCTTTGAGAG
1 GGGTTGCCA-C-TACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAG
*
3961078 GGGTTGACATTGGCTTGTGTGGGCTTTGAGAAG
64 GGGTTGACATTGGCTTGTGTAGGCTTT-A-AAG
*
3961111 GGTTTGCCACTAACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGGGCTTT
1 GGGTTGCCACT-ACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGGGCTTT
3961170 TGAAAGGGAT
Statistics
Matches: 135, Mismatches: 13, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
95 14 0.10
96 34 0.25
97 84 0.62
98 3 0.02
ACGTcount: A:0.17, C:0.17, G:0.35, T:0.32
Consensus pattern (94 bp):
GGGTTGCCACTACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAGGG
GTTGACATTGGCTTGTGTAGGCTTTAAAG
Found at i:3961177 original size:32 final size:33
Alignment explanation
Indices: 3960722--3961184 Score: 408
Period size: 32 Copynumber: 14.4 Consensus size: 33
3960712 CATTAGGCTT
* * *
3960722 AGAAGGGTTGCCACCGACTTGCGTGGGCTTTAG
1 AGAAGGGTTGCCACCAACTTGTGTGGGCTTTTG
3960755 AGAA-GGTTGCCACCAACTTGTGTGGGC-TTT-
1 AGAAGGGTTGCCACCAACTTGTGTGGGCTTTTG
* * *
3960785 AGAAGGAGATGCCACCAACTTATGTGGGCTTTAG
1 AGAAGG-GTTGCCACCAACTTGTGTGGGCTTTTG
*
3960819 AGAA-AGTTGCCACCAACTTGTGTGGGC-TTT-
1 AGAAGGGTTGCCACCAACTTGTGTGGGCTTTTG
* * * *
3960849 AGAAGGGTTGTCACCAGCTTATGTAGG-TTTT-
1 AGAAGGGTTGCCACCAACTTGTGTGGGCTTTTG
** * *
3960880 AGAAAAAGATGCCACCAACTTGTATGGGCTTTTG
1 AG-AAGGGTTGCCACCAACTTGTGTGGGCTTTTG
3960914 AG-AGGGTTGCCACCAACTTGTGTGGGCTTTT-
1 AGAAGGGTTGCCACCAACTTGTGTGGGCTTTTG
* *
3960945 A-AAGGAGGTTGCCACCGACTTGTGTGGAC-TTTG
1 AGAA-G-GGTTGCCACCAACTTGTGTGGGCTTTTG
* * * *
3960978 AGAAAGGTTACCCGCCAACTTGTGTAGGC-TTT-
1 AGAAGGGTT-GCCACCAACTTGTGTGGGCTTTTG
* **
3961010 A-AAGGGGTTGCCATCGTCTTGTGTGGGC-TTTG
1 AGAA-GGGTTGCCACCAACTTGTGTGGGCTTTTG
**
3961042 AGAAGGGTTGCCACTGACTTGTGTGGGC-TTTG
1 AGAAGGGTTGCCACCAACTTGTGTGGGCTTTTG
* * ****
3961074 AGAGGGGTTGACATTGGCTTGTGTGGGC-TTTG
1 AGAAGGGTTGCCACCAACTTGTGTGGGCTTTTG
*
3961106 AGAAGGGTTTGCCACTAACTTGTGTGGGC-TTTG
1 AGAAGGG-TTGCCACCAACTTGTGTGGGCTTTTG
*
3961139 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTTG
1 AGAAGGGTTGCCACCAACTTGTGTGGGCTTTTG
*
3961172 A-AAGGGATGCCAC
1 AGAAGGGTTGCCAC
3961185 TGACTTATAG
Statistics
Matches: 353, Mismatches: 57, Indels: 41
0.78 0.13 0.09
Matches are distributed among these distances:
30 8 0.02
31 47 0.13
32 206 0.58
33 84 0.24
34 8 0.02
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.29
Consensus pattern (33 bp):
AGAAGGGTTGCCACCAACTTGTGTGGGCTTTTG
Found at i:3961218 original size:28 final size:28
Alignment explanation
Indices: 3961130--3961255 Score: 135
Period size: 28 Copynumber: 4.3 Consensus size: 28
3961120 CTAACTTGTG
* * *
3961130 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTGA-AA-GGATGCCACTGAC-T-TA
3961162 TGGGCTTTTGAAAGGGATGCCACTGACTTA
1 TGGGC-TTTGAAA-GGATGCCACTGACTTA
* * * *
3961192 TAGGCTTTGAAAGGATGCCAATTACTTG
1 TGGGCTTTGAAAGGATGCCACTGACTTA
3961220 TGGGCTTTGAAAGGATGCCACTGACTTA
1 TGGGCTTTGAAAGGATGCCACTGACTTA
3961248 TGGGCTTT
1 TGGGCTTT
3961256 TAAAAGGGCC
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
28 45 0.55
29 7 0.09
30 5 0.06
31 1 0.01
32 19 0.23
33 5 0.06
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (28 bp):
TGGGCTTTGAAAGGATGCCACTGACTTA
Found at i:3962466 original size:166 final size:165
Alignment explanation
Indices: 3962254--3962894 Score: 686
Period size: 166 Copynumber: 3.9 Consensus size: 165
3962244 TTTCATGAGT
*
3962254 TTTTTTCTTGAAATTCTCTTGTTTTCGAAATACAGAATTTTCTACTCCATAAATGTTTTCGGGAG
1 TTTTTTCTTGAAATTCTCTTATTTTCGAAATACAGAATTTTCTACTCCATAAATGTTTTCGGGAG
*
3962319 GATTTTTCCTAGTTTTTAATTTTTTAAATCCATAAAATGTTATTATGTAAATTATATTAAATTAT
66 GATTTTTCCTAGTTTTTAATTTTTAAAATCCATAAAATGTTATTAT-TAAATTATATTAAATTAT
3962384 TTTTCAAAAATTCATTCATTTTCATGAGTTTTTCAA
130 TTTTCAAAAATTCATTCATTTTCATGAGTTTTTCAA
* *
3962420 TTTTTTCTTGAAATTCTCTTATTTCCGAAATACAGAATTTTCTACTCCATAAATGTTTTCGGGGG
1 TTTTTTCTTGAAATTCTCTTATTTTCGAAATACAGAATTTTCTACTCCATAAATGTTTTCGGGAG
* * *
3962485 GATTCTCCCTAGTTTTTAATTTTTCAAATCCATAAAATGTTATTATTTAAATTATATTAAATTAT
66 GATTTTTCCTAGTTTTTAATTTTTAAAATCCATAAAATGTTATTA-TTAAATTATATTAAATTAT
* * *
3962550 TTTTCAAATATTCATTCACTTTCTTGAGTTTTTC-A
130 TTTTCAAAAATTCATTCATTTTCATGAGTTTTTCAA
* * ** *
3962585 TTTTTTCCTTGAAATTCTTTTGTTTTCGAAATAC-GAAGTTTTCTACTCTGTAAATGTTTTTGTG
1 TTTTTT-CTTGAAATTCTCTTATTTTCGAAATACAGAA-TTTTCTACTCCATAAATGTTTTCG-G
* * * * * * *
3962649 G-GGATTTTTCTTGGTTTTTAATTTTTAAAATTCATTACATATTATTATTTAATTCATATTAAAT
63 GAGGATTTTTCCTAGTTTTTAATTTTTAAAATCCATAAAATGTTATTATTAAATT-ATATTAAAT
* * * * * * *
3962713 CAGTTTTCTAAAATTTATTTATTTTCATAAG-TTTTGAA
127 TATTTTTCAAAAATTCATTCATTTTCATGAGTTTTTCAA
* * * * ** *
3962751 -TTTTTCTTTAAAATT-TCCCTATTATCGAAAAATTGAATTTTC-ATTTCCATAAATGTTTTCGG
1 TTTTTTC-TTGAAATTCT-CTTATTTTCGAAATACAGAATTTTCTA-CTCCATAAATGTTTTCGG
* * * ** ** * * * *
3962813 GAGGATTTTT-CTCGGTTTTAAAATTTTAAAATTTATCTAATATTGTCATTAAATTTACATTAAA
63 GAGGATTTTTCCT-AGTTTTTAATTTTTAAAATCCATAAAATGTTATTATTAAA-TTATATTAAA
* *
3962877 TCATTTTTAAAAAATTCA
126 TTATTTTTCAAAAATTCA
3962895 AATTATTTCT
Statistics
Matches: 401, Mismatches: 61, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
164 6 0.01
165 120 0.30
166 272 0.68
167 3 0.01
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.50
Consensus pattern (165 bp):
TTTTTTCTTGAAATTCTCTTATTTTCGAAATACAGAATTTTCTACTCCATAAATGTTTTCGGGAG
GATTTTTCCTAGTTTTTAATTTTTAAAATCCATAAAATGTTATTATTAAATTATATTAAATTATT
TTTCAAAAATTCATTCATTTTCATGAGTTTTTCAA
Found at i:3968312 original size:20 final size:20
Alignment explanation
Indices: 3968287--3968341 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
3968277 ATTAGGCTCA
* *
3968287 ATGTATCGATACATTTCACC
1 ATGTATCGATACAATCCACC
**
3968307 ATGTATCGATACAATCCTTC
1 ATGTATCGATACAATCCACC
3968327 ATGTATCGATACAAT
1 ATGTATCGATACAAT
3968342 GTGAGTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (20 bp):
ATGTATCGATACAATCCACC
Found at i:3968797 original size:12 final size:12
Alignment explanation
Indices: 3968780--3968804 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
3968770 TTTACTCACT
3968780 ATTGATTGTATA
1 ATTGATTGTATA
3968792 ATTGATTGTATA
1 ATTGATTGTATA
3968804 A
1 A
3968805 GTTTCAACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (12 bp):
ATTGATTGTATA
Found at i:3978103 original size:51 final size:51
Alignment explanation
Indices: 3978032--3978148 Score: 162
Period size: 51 Copynumber: 2.3 Consensus size: 51
3978022 TACATTATCC
*
3978032 AATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTGAAG
1 AATGTATCAATACATCTGGGTAAAAAGACAGAATGTATCGATACATTGAAG
* * * * **
3978083 AATGTATCAATATATTTGGGTAAAAAGACAGAATGTATTGATACATTCATT
1 AATGTATCAATACATCTGGGTAAAAAGACAGAATGTATCGATACATTGAAG
*
3978134 AATGTATCGATACAT
1 AATGTATCAATACAT
3978149 TGAAAAATGT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (51 bp):
AATGTATCAATACATCTGGGTAAAAAGACAGAATGTATCGATACATTGAAG
Found at i:3978139 original size:20 final size:20
Alignment explanation
Indices: 3978114--3978169 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
3978104 AAAAAGACAG
* **
3978114 AATGTATTGATACATTCATT
1 AATGTATCGATACATTCAAA
*
3978134 AATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
3978154 AATGTATCGATACATT
1 AATGTATCGATACATT
3978170 TGGGTAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:3979001 original size:45 final size:48
Alignment explanation
Indices: 3978896--3979004 Score: 143
Period size: 49 Copynumber: 2.3 Consensus size: 48
3978886 CAATGTGCCA
*
3978896 ATTCAAGGCCAGCGACATTGGGCTAAGGGAAAAGTGGACCAATGTGCTG
1 ATTCAAGGCCAGCGACATTGGGCTAA-GGAAAAGTGGACCAATATGCTG
* * *
3978945 ATTCAAGGCCAGTGACATTGGGCTAA-TAAAGGT-G-CCAATATGCTG
1 ATTCAAGGCCAGCGACATTGGGCTAAGGAAAAGTGGACCAATATGCTG
*
3978990 ATTCAATGCCAGCGA
1 ATTCAAGGCCAGCGA
3979005 TATCAAACTT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
45 23 0.43
46 1 0.02
47 5 0.09
49 25 0.46
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.21
Consensus pattern (48 bp):
ATTCAAGGCCAGCGACATTGGGCTAAGGAAAAGTGGACCAATATGCTG
Found at i:3979173 original size:28 final size:28
Alignment explanation
Indices: 3979084--3979485 Score: 482
Period size: 28 Copynumber: 13.9 Consensus size: 28
3979074 TTAAAAAAAA
*
3979084 GGTGCCACTAACTTGTGTGGGCTTTGAAAAG
1 GGTGCCACTGAC-T-TGTGGGCTTTG-AAAG
* * *
3979115 AGTTGCCA-TCGACTTGTGTGGGATTTTAAAG
1 -GGTGCCACT-GAC-T-TGTGGGCTTTGAAAG
*
3979146 GGTGCCACCGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
3979174 GGTATGCCACTGACTTGTGGGCTTTGAAAG
1 GG--TGCCACTGACTTGTGGGCTTTGAAAG
* *
3979204 GGTGCCACTGACTTGTGGGATTTGAAGG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
3979232 GGTACCACTGACTTGTGGTCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
3979260 GGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
3979288 GGTGCCACTGACTTGTGGGCTTTGGAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
3979316 GGTGCCACTAATTTGTGTGGGCTTTGAAAG
1 GGTGCCACTGA-CT-TGTGGGCTTTGAAAG
*
3979346 GGTATGCCACTGACTTGTGGGCTTTGAAAA
1 GG--TGCCACTGACTTGTGGGCTTTGAAAG
*
3979376 AGTGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* * * * *
3979404 CGTGCCACTAACTTATAGGCTTTGAAAA
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
*
3979432 GATGCCACTGACTTGTGGGCTTTGAAAG
1 GGTGCCACTGACTTGTGGGCTTTGAAAG
* *
3979460 GATGCCACTGACCTGTGGGCTTTGAA
1 GGTGCCACTGACTTGTGGGCTTTGAA
3979486 TAGATGAATG
Statistics
Matches: 324, Mismatches: 38, Indels: 20
0.85 0.10 0.05
Matches are distributed among these distances:
28 221 0.68
29 2 0.01
30 67 0.21
31 6 0.02
32 28 0.09
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (28 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAG
Found at i:3979374 original size:172 final size:172
Alignment explanation
Indices: 3979159--3979483 Score: 526
Period size: 172 Copynumber: 1.9 Consensus size: 172
3979149 GCCACCGACT
**
3979159 TGTGGGCTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGA
1 TGTGGGCTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAAAAAGTGCCACTGACTTGTGGGA
* * * * * *
3979224 TTTGAAGGGGTACCACTGACTTGT-GGTCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAG
66 TTTGAAAGCGTACCACTAACTTATAGG-CTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAG
* *
3979288 GGTGCCACTGACTTGTGGGCTTTGGAAGGGTGCCACTAATTTG
130 GATGCCACTGACCTGTGGGCTTTGGAAGGGTGCCACTAATTTG
*
3979331 TGTGGGCTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAAAAAGTGCCACTGACTTGTGGGC
1 TGTGGGCTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAAAAAGTGCCACTGACTTGTGGGA
*
3979396 TTTGAAAGCGTGCCACTAACTTATAGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGG
66 TTTGAAAGCGTACCACTAACTTATAGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGG
3979461 ATGCCACTGACCTGTGGGCTTTG
131 ATGCCACTGACCTGTGGGCTTTG
3979484 AATAGATGAA
Statistics
Matches: 140, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
172 138 0.99
173 2 0.01
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (172 bp):
TGTGGGCTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAAAAAGTGCCACTGACTTGTGGGA
TTTGAAAGCGTACCACTAACTTATAGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGG
ATGCCACTGACCTGTGGGCTTTGGAAGGGTGCCACTAATTTG
Found at i:3980761 original size:7 final size:7
Alignment explanation
Indices: 3980734--3980814 Score: 56
Period size: 7 Copynumber: 10.9 Consensus size: 7
3980724 TCCGGATCCC
3980734 TTTTTTG
1 TTTTTTG
*
3980741 TTTGTTTA
1 TTT-TTTG
3980749 TTTTTTG
1 TTTTTTG
*
3980756 TTTTTTTTA
1 --TTTTTTG
*
3980765 TTTTTTAT
1 TTTTTT-G
3980773 TTTTTTG
1 TTTTTTG
*
3980780 TTTTTTC
1 TTTTTTG
*
3980787 TTTTTTC
1 TTTTTTG
3980794 TTTTTT-
1 TTTTTTG
3980800 TTTTCTTGG
1 TTTT-TT-G
3980809 TTTTTT
1 TTTTTT
3980815 TGGGTACGAA
Statistics
Matches: 61, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
6 4 0.07
7 33 0.54
8 14 0.23
9 10 0.16
ACGTcount: A:0.04, C:0.04, G:0.07, T:0.85
Consensus pattern (7 bp):
TTTTTTG
Found at i:3980791 original size:16 final size:15
Alignment explanation
Indices: 3980734--3980801 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
3980724 TCCGGATCCC
* *
3980734 TTTTTTGTTTGTTTA
1 TTTTTTGTTTTTTTT
3980749 TTTTTTGTTTTTTTT
1 TTTTTTGTTTTTTTT
* *
3980764 ATTTTTTATTTTTTTG
1 -TTTTTTGTTTTTTTT
*
3980780 TTTTTTCTTTTTTCTT
1 TTTTTTGTTTTTT-TT
3980796 TTTTTT
1 TTTTTT
3980802 TTCTTGGTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
15 25 0.56
16 20 0.44
ACGTcount: A:0.04, C:0.03, G:0.06, T:0.87
Consensus pattern (15 bp):
TTTTTTGTTTTTTTT
Found at i:3980815 original size:1 final size:1
Alignment explanation
Indices: 3980734--3980803 Score: 59
Period size: 1 Copynumber: 70.0 Consensus size: 1
3980724 TCCGGATCCC
* * * * * * * * *
3980734 TTTTTTGTTTGTTTATTTTTTGTTTTTTTTATTTTTTATTTTTTTGTTTTTTCTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3980799 TTTTT
1 TTTTT
3980804 CTTGGTTTTT
Statistics
Matches: 51, Mismatches: 18, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.04, C:0.03, G:0.06, T:0.87
Consensus pattern (1 bp):
T
Found at i:3980815 original size:15 final size:14
Alignment explanation
Indices: 3980734--3980814 Score: 64
Period size: 14 Copynumber: 5.9 Consensus size: 14
3980724 TCCGGATCCC
3980734 TTTTTTGTTTGTTTA
1 TTTTTTGTTT-TTTA
3980749 TTTTTTG-TTTTT-
1 TTTTTTGTTTTTTA
* *
3980761 TTTATT-TTTTAT-
1 TTTTTTGTTTTTTA
*
3980773 TTTTTTGTTTTTTC
1 TTTTTTGTTTTTTA
*
3980787 TTTTTTCTTTTTT-
1 TTTTTTGTTTTTTA
3980800 TTTTCTTGGTTTTTT
1 TTTT-TT-GTTTTTT
3980815 TGGGTACGAA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
12 14 0.25
13 12 0.22
14 16 0.29
15 13 0.24
ACGTcount: A:0.04, C:0.04, G:0.07, T:0.85
Consensus pattern (14 bp):
TTTTTTGTTTTTTA
Found at i:3995243 original size:31 final size:31
Alignment explanation
Indices: 3995208--3995303 Score: 97
Period size: 31 Copynumber: 3.5 Consensus size: 31
3995198 TTTTAACTAG
3995208 ATGTATCGATACATCTTGGTAAAAAGATAGA
1 ATGTATCGATACATCTTGGTAAAAAGATAGA
3995239 ATGTATCGATACA--TT-G--AAAA-AT---
1 ATGTATCGATACATCTTGGTAAAAAGATAGA
* *
3995261 --GTATCGATACATCTGGGTAAAAAGACAGA
1 ATGTATCGATACATCTTGGTAAAAAGATAGA
3995290 ATGTATCGATACAT
1 ATGTATCGATACAT
3995304 TCATACATGT
Statistics
Matches: 52, Mismatches: 2, Indels: 22
0.68 0.03 0.29
Matches are distributed among these distances:
20 11 0.21
22 1 0.02
23 1 0.02
25 6 0.12
26 5 0.10
28 1 0.02
29 2 0.04
31 25 0.48
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (31 bp):
ATGTATCGATACATCTTGGTAAAAAGATAGA
Found at i:3995283 original size:24 final size:20
Alignment explanation
Indices: 3995238--3995343 Score: 77
Period size: 20 Copynumber: 4.8 Consensus size: 20
3995228 AAAAAGATAG
3995238 AATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
3995258 AATGTATCGATACATCTGGGTAAAAAGACA
1 AATGTATCGATACAT-T--G-----A-A-A
* *
3995288 GAATGTATCGATACATTCATA
1 -AATGTATCGATACATTGAAA
*
3995309 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
*
3995329 AATGAATCGATACAT
1 AATGTATCGATACAT
3995344 CTAGGTAAAA
Statistics
Matches: 68, Mismatches: 7, Indels: 22
0.70 0.07 0.23
Matches are distributed among these distances:
20 45 0.66
21 2 0.03
23 2 0.03
28 1 0.01
29 1 0.01
30 2 0.03
31 15 0.22
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.28
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:3995284 original size:51 final size:51
Alignment explanation
Indices: 3995208--3995323 Score: 187
Period size: 51 Copynumber: 2.3 Consensus size: 51
3995198 TTTTAACTAG
* * *
3995208 ATGTATCGATACATCTTGGTAAAAAGATAGAATGTATCGATACATTGAAAA
1 ATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTCAAAA
* *
3995259 ATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTCATAC
1 ATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTCAAAA
3995310 ATGTATCGATACAT
1 ATGTATCGATACAT
3995324 TGAAAAATGA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (51 bp):
ATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTCAAAA
Found at i:3995339 original size:40 final size:40
Alignment explanation
Indices: 3995289--3995415 Score: 128
Period size: 40 Copynumber: 3.4 Consensus size: 40
3995279 AAAAAGACAG
3995289 AATGTATCGATACATTCATACATGTATCGATACATTGAAA
1 AATGTATCGATACATTCATACATGTATCGATACATTGAAA
* * ** *
3995329 AATGAATCGATACA-TC-T--AGGTA---A-A-AAAGACAG
1 AATGTATCGATACATTCATACATGTATCGATACATTGA-AA
*
3995361 AATGTATTGATACATTCATACATGTATCGATACATTGAAA
1 AATGTATCGATACATTCATACATGTATCGATACATTGAAA
3995401 AATGTATCGATACAT
1 AATGTATCGATACAT
3995416 CTGGGTAAAA
Statistics
Matches: 65, Mismatches: 12, Indels: 20
0.67 0.12 0.21
Matches are distributed among these distances:
31 3 0.05
32 14 0.22
33 3 0.05
34 1 0.02
36 8 0.12
38 1 0.02
39 3 0.05
40 29 0.45
41 3 0.05
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (40 bp):
AATGTATCGATACATTCATACATGTATCGATACATTGAAA
Found at i:3995387 original size:20 final size:20
Alignment explanation
Indices: 3995361--3995415 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
3995351 AAAAAGACAG
* *
3995361 AATGTATTGATACATTCATA
1 AATGTATCGATACATTCAAA
* *
3995381 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
3995401 AATGTATCGATACAT
1 AATGTATCGATACAT
3995416 CTGGGTAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:3995394 original size:72 final size:72
Alignment explanation
Indices: 3995239--3995426 Score: 342
Period size: 72 Copynumber: 2.6 Consensus size: 72
3995229 AAAAGATAGA
3995239 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGT-AAAAAGACAGAATGTATCGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAGACAGAATGTATCGATACA
3995303 TTCATAC
66 TTCATAC
* * *
3995310 ATGTATCGATACATTGAAAAATGAATCGATACATCTAGGTAAAAAAGACAGAATGTATTGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAGACAGAATGTATCGATACA
3995375 TTCATAC
66 TTCATAC
3995382 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
3995427 TGTGACTTTT
Statistics
Matches: 111, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 38 0.34
72 73 0.66
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (72 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAGACAGAATGTATCGATACA
TTCATAC
Found at i:3996875 original size:17 final size:17
Alignment explanation
Indices: 3996850--3996883 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
3996840 TCATAGGTTA
3996850 GCAACGAACCTATGAGT
1 GCAACGAACCTATGAGT
*
3996867 GCAATGAACCTATGAGT
1 GCAACGAACCTATGAGT
3996884 TCATCCAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (17 bp):
GCAACGAACCTATGAGT
Found at i:3998385 original size:13 final size:13
Alignment explanation
Indices: 3998367--3998396 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
3998357 ACAATCCTTC
3998367 ATGTATCGATACA
1 ATGTATCGATACA
3998380 ATGTATCGATACA
1 ATGTATCGATACA
3998393 ATGT
1 ATGT
3998397 GAGTTTTAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3998805 original size:33 final size:33
Alignment explanation
Indices: 3998768--3998834 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3998758 TTCAACGATT
3998768 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
3998801 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
3998834 T
1 T
3998835 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:3998806 original size:13 final size:13
Alignment explanation
Indices: 3998788--3998812 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3998778 CATAAAATGT
3998788 TGTATCGATACAA
1 TGTATCGATACAA
3998801 TGTATCGATACA
1 TGTATCGATACA
3998813 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3998876 original size:21 final size:21
Alignment explanation
Indices: 3998851--3998930 Score: 160
Period size: 21 Copynumber: 3.8 Consensus size: 21
3998841 TACTGCCAAA
3998851 AAATGTATCGATACATTACTC
1 AAATGTATCGATACATTACTC
3998872 AAATGTATCGATACATTACTC
1 AAATGTATCGATACATTACTC
3998893 AAATGTATCGATACATTACTC
1 AAATGTATCGATACATTACTC
3998914 AAATGTATCGATACATT
1 AAATGTATCGATACATT
3998931 GTATCGATAC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 59 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (21 bp):
AAATGTATCGATACATTACTC
Found at i:3998935 original size:13 final size:13
Alignment explanation
Indices: 3998917--3998941 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3998907 ATTACTCAAA
3998917 TGTATCGATACAT
1 TGTATCGATACAT
3998930 TGTATCGATACA
1 TGTATCGATACA
3998942 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3999043 original size:52 final size:52
Alignment explanation
Indices: 3998950--3999079 Score: 201
Period size: 52 Copynumber: 2.5 Consensus size: 52
3998940 CACTGATCTT
* *
3998950 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATT-AAA
3999001 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATTAAA
* *
3999053 TGTATCGATACATGCAAGCAACTTTTC
1 TGTATCGATACATGCAGGCAAATTTTC
3999080 ATATTTTGGG
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
51 19 0.26
52 51 0.70
53 3 0.04
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATTAAA
Found at i:4004537 original size:19 final size:19
Alignment explanation
Indices: 4004513--4004551 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
4004503 ATTCTATACT
4004513 TTATCTTAAGCATTTGTGA
1 TTATCTTAAGCATTTGTGA
**
4004532 TTATCTTAAGTGTTTGTGA
1 TTATCTTAAGCATTTGTGA
4004551 T
1 T
4004552 AATTTGAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.08, G:0.18, T:0.51
Consensus pattern (19 bp):
TTATCTTAAGCATTTGTGA
Found at i:4006053 original size:2 final size:2
Alignment explanation
Indices: 4006046--4006071 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4006036 GATTATTTAA
4006046 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4006072 TGACAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4007508 original size:17 final size:17
Alignment explanation
Indices: 4007486--4007521 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
4007476 ATAAATCCAC
4007486 ACATAAAATTGCACCAA
1 ACATAAAATTGCACCAA
4007503 ACATAAAATTGCACCAA
1 ACATAAAATTGCACCAA
4007520 AC
1 AC
4007522 TTCCCTGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.53, C:0.25, G:0.06, T:0.17
Consensus pattern (17 bp):
ACATAAAATTGCACCAA
Found at i:4008364 original size:13 final size:13
Alignment explanation
Indices: 4008346--4008375 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
4008336 CGGAAATGAA
4008346 ATTAAACTATGTT
1 ATTAAACTATGTT
4008359 ATTAAACTATGTT
1 ATTAAACTATGTT
4008372 ATTA
1 ATTA
4008376 GCCATGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (13 bp):
ATTAAACTATGTT
Found at i:4011289 original size:14 final size:15
Alignment explanation
Indices: 4011267--4011298 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
4011257 AGAAAGAAAA
4011267 GGTCAAAAAACTAAG
1 GGTCAAAAAACTAAG
4011282 GGTCAAAAAACTAAG
1 GGTCAAAAAACTAAG
4011297 GG
1 GG
4011299 CACATTTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.12, G:0.25, T:0.12
Consensus pattern (15 bp):
GGTCAAAAAACTAAG
Found at i:4013982 original size:88 final size:86
Alignment explanation
Indices: 4013812--4013983 Score: 229
Period size: 88 Copynumber: 2.0 Consensus size: 86
4013802 AGAGGCAAAC
* * * * *
4013812 GATTTTGTTTTCAAAAAACTAAACAGACCATACATTTTTACTTTCCGTATTGCTCTAGACCTATC
1 GATTTTGTTTTCAAAAAACCAAACAAACCATACATTTTTACTTTCCGTACTGCCCGAGACCTATC
4013877 AAAGTCCCAGACAGCCAATGT
66 AAAGTCCCAGACAGCCAATGT
* * *
4013898 GATTTTTTTTTCAAAAAACCAAACAAACTATACATTTTTCTGCTTTCCGTACTGCCCCGA-ACCT
1 GATTTTGTTTTCAAAAAACCAAACAAACCATACA-TTTT-TACTTTCCGTACTG-CCCGAGACCT
*
4013962 ATCAAAGTCCCAGATAGCCAAT
63 ATCAAAGTCCCAGACAGCCAAT
4013984 TTGGAACAGG
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
86 30 0.41
87 4 0.05
88 37 0.50
89 3 0.04
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.32
Consensus pattern (86 bp):
GATTTTGTTTTCAAAAAACCAAACAAACCATACATTTTTACTTTCCGTACTGCCCGAGACCTATC
AAAGTCCCAGACAGCCAATGT
Found at i:4020405 original size:27 final size:27
Alignment explanation
Indices: 4020357--4020426 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
4020347 TTTAAAAACA
* *
4020357 GGGTTGGAGCATCCTCTCGGAAGAATG
1 GGGTTGGAGTATCCTCTCGGAAAAATG
* *
4020384 GGGTTGGAGTATCTTCTTGGAAAAATG
1 GGGTTGGAGTATCCTCTCGGAAAAATG
*
4020411 GGGTTGGAGTGTCCTC
1 GGGTTGGAGTATCCTC
4020427 GACGATGATA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.20, C:0.14, G:0.37, T:0.29
Consensus pattern (27 bp):
GGGTTGGAGTATCCTCTCGGAAAAATG
Found at i:4020417 original size:122 final size:122
Alignment explanation
Indices: 4020258--4020521 Score: 395
Period size: 122 Copynumber: 2.2 Consensus size: 122
4020248 TTGGTTGAAA
* * * * * * *
4020258 AATGGGATTGGAGTATCCCCTCGGAGAAATGGGGTTGGAATGTCCTTGATGATGATAATTTTGGC
1 AATGGGGTTGGAGTATCTCCTCGGAAAAATGGGGTTGGAATGTCCTCGACGATGATAATTTAGGA
*
4020323 AAAAATAGGAAGTATCTTGATAAGTTTAAAAAC-AGGGTTGGAGCATCCTCTCGGAAG
66 AAAAATAGGAAGTATCTTGACAAGTTTAAAAACGA-GGTTGGAGCATCCTCTCGGAAG
* * *
4020380 AATGGGGTTGGAGTATCTTCTTGGAAAAATGGGGTTGGAGTGTCCTCGACGATGATAATTTAGGA
1 AATGGGGTTGGAGTATCTCCTCGGAAAAATGGGGTTGGAATGTCCTCGACGATGATAATTTAGGA
* *
4020445 AAAAATAGGAAGTATCTTGACAAGTTTAAAAACGAGGTTGGAGTATTCTCTCGGAAG
66 AAAAATAGGAAGTATCTTGACAAGTTTAAAAACGAGGTTGGAGCATCCTCTCGGAAG
4020502 AATGGGGTTGGAGTATCTCC
1 AATGGGGTTGGAGTATCTCC
4020522 AATAAAGGAA
Statistics
Matches: 127, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
122 126 0.99
123 1 0.01
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.28
Consensus pattern (122 bp):
AATGGGGTTGGAGTATCTCCTCGGAAAAATGGGGTTGGAATGTCCTCGACGATGATAATTTAGGA
AAAAATAGGAAGTATCTTGACAAGTTTAAAAACGAGGTTGGAGCATCCTCTCGGAAG
Found at i:4022736 original size:20 final size:20
Alignment explanation
Indices: 4022711--4022786 Score: 80
Period size: 20 Copynumber: 3.7 Consensus size: 20
4022701 AAAAATCTAG
*
4022711 AATGTATCGATACAATGAGA
1 AATGTATCGATACAATTAGA
* *
4022731 AATGTATCGGTACAATTATA
1 AATGTATCGATACAATTAGA
* *
4022751 AGCATGTATCGATACATTTAGT
1 A--ATGTATCGATACAATTAGA
*
4022773 AATATATCGATACA
1 AATGTATCGATACA
4022787 TTTCCTTGGC
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 30 0.65
22 16 0.35
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.32
Consensus pattern (20 bp):
AATGTATCGATACAATTAGA
Found at i:4023131 original size:25 final size:25
Alignment explanation
Indices: 4023102--4023152 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 25
4023092 TTTAAAGGGT
4023102 GCCAATAT-TTTTTTTTTAAGGTTAG
1 GCCAATATATTTTTTTTTAA-GTTAG
4023127 GCCAATATATTTTTTTTTAAGTTAG
1 GCCAATATATTTTTTTTTAAGTTAG
4023152 G
1 G
4023153 TCTAACCACA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.25, C:0.08, G:0.16, T:0.51
Consensus pattern (25 bp):
GCCAATATATTTTTTTTTAAGTTAG
Found at i:4026341 original size:29 final size:29
Alignment explanation
Indices: 4026303--4026361 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
4026293 CAAGATTGTT
*
4026303 TTATTATTCCATTTCTAGAATTTTATTTA
1 TTATTATTCCATTTCTAAAATTTTATTTA
4026332 TTATTATTCCATTTCTAAAATTTTATTTA
1 TTATTATTCCATTTCTAAAATTTTATTTA
4026361 T
1 T
4026362 GACTATTAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (29 bp):
TTATTATTCCATTTCTAAAATTTTATTTA
Found at i:4026368 original size:29 final size:29
Alignment explanation
Indices: 4026307--4026368 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
4026297 ATTGTTTTAT
* * *
4026307 TATTCCATTTCTAGAATTTTATTTATTAT
1 TATTCCATTTCTAAAATTTTATTTATGAC
4026336 TATTCCATTTCTAAAATTTTATTTATGAC
1 TATTCCATTTCTAAAATTTTATTTATGAC
4026365 TATT
1 TATT
4026369 AACTTTAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.29, C:0.11, G:0.03, T:0.56
Consensus pattern (29 bp):
TATTCCATTTCTAAAATTTTATTTATGAC
Found at i:4028394 original size:156 final size:154
Alignment explanation
Indices: 4028070--4028648 Score: 691
Period size: 156 Copynumber: 3.7 Consensus size: 154
4028060 TAATACCCCA
* * * * * * *
4028070 AAAGGACTTAAAAAGGATTATAGATGAGATGAACCTATCCTAAATACCCATCTTTTGCATAAAAG
1 AAAGGACTTAAAAAGGACTATAAAAGGGATGAATCTATCCTAAATACCCACCTTTAGCATAAAAG
* * *
4028135 CGGA-CTGGTGATAACATAAGACTCGATTCTAAAAAATTACGAAAATGCCCT-GAGGGATACCTT
66 CGGACCCGGTGATAACTTAGGACTCGATTCTAAAAAATTACGAAAATGCCCTAG-GGGATACCTT
* * *
4028198 TGACTTGAAAGTATGC-CGATACCCCT
130 CGACCTGAAAGTAT-CTCGGTA-CCCT
* * * *
4028224 AAAGGACTTAAAAAGGACTATAAAAGGGATGAATCTATCCTAAATACCTACCTTCAACACAAAAG
1 AAAGGACTTAAAAAGGACTATAAAAGGGATGAATCTATCCTAAATACCCACCTTTAGCATAAAAG
* * * * *
4028289 CGGACCCGGTGATAACCTAGGACTTGATTTTGAAAAATTACGAAAATATCCCTAGGGGATACCTT
66 CGGACCCGGTGATAACTTAGGACTCGATTCTAAAAAATTACGAAAAT-GCCCTAGGGGATACCTT
*
4028354 CGACGTGAAAGTATCTCGGTATCCCT
130 CGACCTGAAAGTATCTCGGTA-CCCT
* * *
4028380 AGAGGACTTAAAAAGGACTATAAAAGGGAT-AAACATATCCTAAATACCCACCTTTGGCATAAAA
1 AAAGGACTTAAAAAGGACTATAAAAGGGATGAATC-TATCCTAAATACCCACCTTTAGCAT-AAA
* ** *
4028444 AGCGAACCCGGTGATAACTTAGGACTTTATTCTAAAAAATTACGAAAATGCCCTTAAAGGG-TAC
64 AGCGGACCCGGTGATAACTTAGGACTCGATTCTAAAAAATTACGAAAATGCCC-T-AGGGGATAC
*
4028508 CTTCGACCTGAAAGTATCTTGGTACCCTT
127 CTTCGACCTGAAAGTATCTCGGTACCC-T
* *
4028537 AAAGGACTTAAAAAGGACTATAAAAGGGATGACTCTATCCTAAAAACCCACCTTTAGCATAAAAG
1 AAAGGACTTAAAAAGGACTATAAAAGGGATGAATCTATCCTAAATACCCACCTTTAGCATAAAAG
* ** * *
4028602 TGGACCCAATGATAACTTAGGACTCGGTTCTAAAAAAATACGAAAAT
66 CGGACCCGGTGATAACTTAGGACTCGATTCTAAAAAATTACGAAAAT
4028649 ACTTTTGGGG
Statistics
Matches: 364, Mismatches: 51, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
154 58 0.16
155 40 0.11
156 133 0.37
157 127 0.35
158 6 0.02
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (154 bp):
AAAGGACTTAAAAAGGACTATAAAAGGGATGAATCTATCCTAAATACCCACCTTTAGCATAAAAG
CGGACCCGGTGATAACTTAGGACTCGATTCTAAAAAATTACGAAAATGCCCTAGGGGATACCTTC
GACCTGAAAGTATCTCGGTACCCT
Found at i:4028662 original size:313 final size:309
Alignment explanation
Indices: 4028050--4028707 Score: 800
Period size: 313 Copynumber: 2.1 Consensus size: 309
4028040 GACTTTGACA
* * * * * * *
4028050 TAAAAGTACCTAATACCCCAAAAGGACTTAAAAAGGATTATAGATGAGATGAACCTATCCTAAAT
1 TAAAAGTACCCAATACCCCTAAAGGACTTAAAAAGGACTATAAAAGAGATAAACATATCCTAAAT
* * * *
4028115 ACCCATCTTTTGCATAAAAGCGGACTGGTGATAACATAAGACTCGATTCTAAAAAATTACGAAAA
66 ACCCACCTTTGGCATAAAAGCGAACCGGTGATAACATAAGACTCGATTCTAAAAAATTACGAAAA
* * *
4028180 TGCCCTGAGGGATACCTTTGACTTGAAAGTATGCCGATACCCCTAAAGGACTTAAAAAGGACTAT
131 TGCCCTAAGGGATACCTTCGACCTGAAAGTATGCCGATACCCCTAAAGGACTTAAAAAGGACTAT
* * **
4028245 AAAAGGGATGAATCTATCCTAAATACCTACCTTCAACACAAAAGCGGACCCGGTGATAACCTAGG
196 AAAAGGGATGAATCTATCCTAAAAACCCACCTTCAACACAAAAGCGGACCCAATGATAACCTAGG
* * * *
4028310 ACTTGATTTTGAAAAATTACGAAAATATCCCTAGGGGATACCTTCGACG
261 ACTCGATTCTAAAAAAATACGAAAATATCCCTAGGGGATACCTTCGACG
* * ** * * *
4028359 TGAAAGTATCTCGGTATCCCTAGAGGACTTAAAAAGGACTATAAAAGGGATAAACATATCCTAAA
1 TAAAAGTA-CCCAATACCCCTAAAGGACTTAAAAAGGACTATAAAAGAGATAAACATATCCTAAA
* * **
4028424 TACCCACCTTTGGCATAAAAAGCGAACCCGGTGATAACTTAGGACTTTATTCTAAAAAATTACGA
65 TACCCACCTTTGGCAT-AAAAGCGAA-CCGGTGATAACATAAGACTCGATTCTAAAAAATTACGA
* * *
4028489 AAATGCCCTTAAAGGG-TACCTTCGACCTGAAAGTAT-CTTGGTACCCTTAAAGGACTTAAAAAG
128 AAATGCCC-T-AAGGGATACCTTCGACCTGAAAGTATGC-CGATACCCCTAAAGGACTTAAAAAG
* * * * *
4028552 GACTATAAAAGGGATGACTCTATCCTAAAAACCCACCTTTAGCATAAAAGTGGACCCAATGATAA
190 GACTATAAAAGGGATGAATCTATCCTAAAAACCCACCTTCAACACAAAAGCGGACCCAATGATAA
* * ** * * *
4028617 CTTAGGACTCGGTTCTAAAAAAATACGAAAATA-CTTTTGGGGGATACTTTTGACG
255 CCTAGGACTCGATTCTAAAAAAATACGAAAATATC-CCTAGGGGATACCTTCGACG
4028672 TAAAAGTACCCAATACCCCTAAAGGACTTAAAAAGG
1 TAAAAGTACCCAATACCCCTAAAGGACTTAAAAAGG
4028708 TTGGCAATAA
Statistics
Matches: 288, Mismatches: 54, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
309 7 0.02
310 57 0.20
311 8 0.03
312 66 0.23
313 146 0.51
314 4 0.01
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (309 bp):
TAAAAGTACCCAATACCCCTAAAGGACTTAAAAAGGACTATAAAAGAGATAAACATATCCTAAAT
ACCCACCTTTGGCATAAAAGCGAACCGGTGATAACATAAGACTCGATTCTAAAAAATTACGAAAA
TGCCCTAAGGGATACCTTCGACCTGAAAGTATGCCGATACCCCTAAAGGACTTAAAAAGGACTAT
AAAAGGGATGAATCTATCCTAAAAACCCACCTTCAACACAAAAGCGGACCCAATGATAACCTAGG
ACTCGATTCTAAAAAAATACGAAAATATCCCTAGGGGATACCTTCGACG
Found at i:4032969 original size:132 final size:134
Alignment explanation
Indices: 4032729--4033177 Score: 591
Period size: 135 Copynumber: 3.4 Consensus size: 134
4032719 TATCCGTTAA
** * * *
4032729 GGTTACCAAGATACTTTTTTGTCGAAAGTATACCTTAGGGGTATTTTAGTAATTTTCCTCATCTG
1 GGTTACCAAGATACTTTCATGTCGAAGGTATACCTTAGGGGTATTTTAGTAATTTTCTTCATATG
* *
4032794 AATGCTTTTATGCCAAAGGTGAATTTTTAAGATTGGTGTAGCCTTCCTAGAATACTTTAAGGTCC
66 -ATGCTTTTATGCCAAAGGTGAATTTTTAGGATTGGTGTAGCCTTCCTAGATTACTTTAAGGTCC
4032859 ATTAG
130 ATTAG
* *
4032864 GGTTACCAAGATACTTTCATGTCGAGGGTA-ACCCTAGGGGTATTTTAGTAATTTT-TTCATATG
1 GGTTACCAAGATACTTTCATGTCGAAGGTATACCTTAGGGGTATTTTAGTAATTTTCTTCATATG
* *
4032927 ATGCTTTTATGCTC-AAGGTGAATTTTTAGGATTGGTGTAGCCTTCCTAGATTACTTTAAGATCT
66 ATGCTTTTATGC-CAAAGGTGAATTTTTAGGATTGGTGTAGCCTTCCTAGATTACTTTAAGGTCC
4032991 ATTAG
130 ATTAG
* * * * ** *
4032996 GGTTATCAGGATACTTTCATGCCAAAGGTATATTTTTGGGGTATTTTAGTAATTTTCCTT-ATTA
1 GGTTACCAAGATACTTTCATGTCGAAGGTATACCTTAGGGGTATTTTAGTAATTTT-CTTCA-TA
*
4033060 GGATGCTTTTATGCCAAAGGTGAATTTTTAGGATTGGTGTAGCCTTCCTAGATTACTTTAAGGTC
64 TGATGCTTTTATGCCAAAGGTGAATTTTTAGGATTGGTGTAGCCTTCCTAGATTACTTTAAGGTC
*
4033125 CGTTAG
129 CATTAG
* * * * * * *
4033131 GGTTATCGAGATACTTTTATATCAAAAGTATACCTTAAGGGTATTTT
1 GGTTACCAAGATACTTTCATGTCGAAGGTATACCTTAGGGGTATTTT
4033178 GATACTTTTT
Statistics
Matches: 274, Mismatches: 34, Indels: 12
0.86 0.11 0.04
Matches are distributed among these distances:
132 88 0.32
133 28 0.10
134 26 0.09
135 132 0.48
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.40
Consensus pattern (134 bp):
GGTTACCAAGATACTTTCATGTCGAAGGTATACCTTAGGGGTATTTTAGTAATTTTCTTCATATG
ATGCTTTTATGCCAAAGGTGAATTTTTAGGATTGGTGTAGCCTTCCTAGATTACTTTAAGGTCCA
TTAG
Found at i:4033108 original size:135 final size:134
Alignment explanation
Indices: 4032764--4033147 Score: 528
Period size: 132 Copynumber: 2.9 Consensus size: 134
4032754 AAGTATACCT
* * *
4032764 TAGGGGTATTTTAGTAATTTTCCTCATCT-GAATGCTTTTATGCCAAAGGTGAATTTTTAAGATT
1 TAGGGGTATTTTAGTAATTTTCCTTAT-TAGGATGCTTTTATGCCAAAGGTGAATTTTTAGGATT
* * * * * *
4032828 GGTGTAGCCTTCCTAGAATACTTTAAGGTCCATTAGGGTTACCAAGATACTTTCATGTCGAGGGT
65 GGTGTAGCCTTCCTAGATTACTTTAAGGTCCATTAGGGTTATCAGGATACTTTCATGCCAAAGGT
4032893 AACCC
130 AACCC
*
4032898 TAGGGGTATTTTAGTAATTTT--TTCA-TATGATGCTTTTATGCTC-AAGGTGAATTTTTAGGAT
1 TAGGGGTATTTTAGTAATTTTCCTT-ATTAGGATGCTTTTATGC-CAAAGGTGAATTTTTAGGAT
* *
4032959 TGGTGTAGCCTTCCTAGATTACTTTAAGATCTATTAGGGTTATCAGGATACTTTCATGCCAAAGG
64 TGGTGTAGCCTTCCTAGATTACTTTAAGGTCCATTAGGGTTATCAGGATACTTTCATGCCAAAGG
***
4033024 TATATTT
129 TA-ACCC
*
4033031 TTGGGGTATTTTAGTAATTTTCCTTATTAGGATGCTTTTATGCCAAAGGTGAATTTTTAGGATTG
1 TAGGGGTATTTTAGTAATTTTCCTTATTAGGATGCTTTTATGCCAAAGGTGAATTTTTAGGATTG
*
4033096 GTGTAGCCTTCCTAGATTACTTTAAGGTCCGTTAGGGTTATC-GAGATACTTT
66 GTGTAGCCTTCCTAGATTACTTTAAGGTCCATTAGGGTTATCAG-GATACTTT
4033148 TATATCAAAA
Statistics
Matches: 221, Mismatches: 20, Indels: 17
0.86 0.08 0.07
Matches are distributed among these distances:
131 1 0.00
132 89 0.40
133 23 0.10
134 24 0.11
135 84 0.38
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (134 bp):
TAGGGGTATTTTAGTAATTTTCCTTATTAGGATGCTTTTATGCCAAAGGTGAATTTTTAGGATTG
GTGTAGCCTTCCTAGATTACTTTAAGGTCCATTAGGGTTATCAGGATACTTTCATGCCAAAGGTA
ACCC
Found at i:4033280 original size:113 final size:113
Alignment explanation
Indices: 4033079--4033290 Score: 282
Period size: 113 Copynumber: 1.9 Consensus size: 113
4033069 TATGCCAAAG
*** * * *
4033079 GTGAATTTTTAGGATTGGTGTAGCCTTCCTAGATTACTTTAAGGTCCGTTAGGGTTATCGAGATA
1 GTGAATTTTTAGGATCCATGTAGCCTTCCTAGATTACTTTAAAGTCCATTAGGATTATCGAGATA
* *
4033144 CTTTTATATCAAAAGTATACCTTAAGGGTATTTTGATACTTTTTTTTA
66 CTTTCATATCAAAAGTATACCTTAAGGGAATTTTGATACTTTTTTTTA
* *
4033192 GTGAATTTTTAGGATCCATGTAGCCTTCTTAGATTACTTTAAAGTCCATTAGGATTATCGAGGTA
1 GTGAATTTTTAGGATCCATGTAGCCTTCCTAGATTACTTTAAAGTCCATTAGGATTATCGAGATA
* * * *
4033257 CTTTCAT-GCTAAAGGTATGCCTTAGGGGAATTTT
66 CTTTCATATC-AAAAGTATACCTTAAGGGAATTTT
4033291 AGTAATTTTC
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
112 1 0.01
113 83 0.99
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (113 bp):
GTGAATTTTTAGGATCCATGTAGCCTTCCTAGATTACTTTAAAGTCCATTAGGATTATCGAGATA
CTTTCATATCAAAAGTATACCTTAAGGGAATTTTGATACTTTTTTTTA
Found at i:4034966 original size:20 final size:21
Alignment explanation
Indices: 4034927--4034976 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
4034917 TCGACAAAAT
*
4034927 GTATCGATACAATTAGTGAAC
1 GTATCGATACAATAAGTGAAC
*
4034948 GTATCGATAC-ATAAGTGAAT
1 GTATCGATACAATAAGTGAAC
4034968 GTATCGATA
1 GTATCGATA
4034977 TATGTCTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 17 0.63
21 10 0.37
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (21 bp):
GTATCGATACAATAAGTGAAC
Found at i:4035056 original size:20 final size:20
Alignment explanation
Indices: 4035028--4035079 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
4035018 TTCAAAAAAT
*
4035028 TGTAACGATACATAAGT-AAA
1 TGTATCGATACAT-AGTCAAA
**
4035048 TGTATCGATACATTTTCAAA
1 TGTATCGATACATAGTCAAA
4035068 TGTATCGATACA
1 TGTATCGATACA
4035080 ATTTGCTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (20 bp):
TGTATCGATACATAGTCAAA
Found at i:4035435 original size:22 final size:22
Alignment explanation
Indices: 4035407--4035458 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
4035397 GAACTCTAAC
4035407 CAGCCACCATGGCATTCATTTT
1 CAGCCACCATGGCATTCATTTT
4035429 CAGCCACCATGGCATTCATTTT
1 CAGCCACCATGGCATTCATTTT
4035451 CAGCCACC
1 CAGCCACC
4035459 CTACTTAGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.23, C:0.37, G:0.13, T:0.27
Consensus pattern (22 bp):
CAGCCACCATGGCATTCATTTT
Found at i:4044573 original size:52 final size:52
Alignment explanation
Indices: 4044456--4044573 Score: 123
Period size: 52 Copynumber: 2.3 Consensus size: 52
4044446 AAATGTCAGT
*** * *
4044456 AATGTATTGATACATTCTAGGTTTTTAACCTGCATGTATCGATACATTAAAG
1 AATGTATTGATACATTCTAGGTTAAAAACCTGAATGTATCGATACATGAAAG
** * *
4044508 AATGTATCAATACA-TGTAGGTTAAAAACCTAGAATGTATCGATACAATGAGA-
1 AATGTATTGATACATTCTAGGTTAAAAACCT-GAATGTATCGATAC-ATGAAAG
4044560 AATGTATTGATACA
1 AATGTATTGATACA
4044574 ATTGTGAGCA
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
51 12 0.23
52 37 0.70
53 4 0.08
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (52 bp):
AATGTATTGATACATTCTAGGTTAAAAACCTGAATGTATCGATACATGAAAG
Found at i:4044696 original size:19 final size:20
Alignment explanation
Indices: 4044672--4044723 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 20
4044662 CGATACCTTA
4044672 TATCGATACAAAACT-TATG
1 TATCGATACAAAACTATATG
** *
4044691 TATCGATACATTTACTATTTG
1 TATCGATACA-AAACTATATG
4044712 TATCGATACAAA
1 TATCGATACAAA
4044724 TTGTAGAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 10 0.38
20 3 0.12
21 13 0.50
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (20 bp):
TATCGATACAAAACTATATG
Found at i:4046173 original size:79 final size:79
Alignment explanation
Indices: 4046068--4046350 Score: 343
Period size: 79 Copynumber: 3.6 Consensus size: 79
4046058 GAGATAATAA
* * * * * *
4046068 CGGGGTTGGCGTATCCCCTTGAAAATAATGGGGTTGGAGTATCCCCGGTTGTGAAAAATCGATGA
1 CGGGGTTGGGGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGA
*
4046133 TTTGGAAATAAAAT
66 TTTAGAAATAAAAT
* * * * * * * * *
4046147 CGGGATTGGGGCATCCCCTTGGAAATAACGGGGTTGAAGTATCTCCGACTATAAAAAATTGATGT
1 CGGGGTTGGGGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGA
*
4046212 TTTAGAAATAAAAC
66 TTTAGAAATAAAAT
* * * * *
4046226 CGGGGTTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCGCCGATTATGAGAAATTAAT-A
1 CGGGGTTGGGGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGA
*
4046290 TTTTAGAAATAAAGT
66 -TTTAGAAATAAAAT
4046305 CGGGGTTGGGGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
1 CGGGGTTGGGGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
4046351 TCGGAAATAA
Statistics
Matches: 170, Mismatches: 33, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
79 170 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGGGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGA
TTTAGAAATAAAAT
Found at i:4046339 original size:28 final size:28
Alignment explanation
Indices: 4046305--4046378 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
4046295 GAAATAAAGT
*
4046305 CGGGGTTGGGGTATCCCCTCGAAAATAA
1 CGGGGTTGGAGTATCCCCTCGAAAATAA
*
4046333 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCTCGAAAATAA
*
4046361 TGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
4046379 GATGAAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.22, C:0.22, G:0.34, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAA
Found at i:4046439 original size:104 final size:105
Alignment explanation
Indices: 4046226--4046454 Score: 316
Period size: 104 Copynumber: 2.2 Consensus size: 105
4046216 GAAATAAAAC
* *
4046226 CGGGGTTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCGCCGATTATGAGAAATTAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCG--TATGAAAAATTAATAT
** * *
4046291 TTTAGAAATAAAGTCGGGGTTGGGGTATCCCCTCGAAAATAA
64 TTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAA
* * * * *
4046333 CGGGGTTGGAGTATCCCCTCGGAAATAATGGGGTTGGAGTATCCCCG-ATGAAAAATTGATGTTT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGTATGAAAAATTAATATTT
*
4046397 TAGAAATAAAACCGGGGTTGGAGTGTCCCCTCAAAAATAA
66 TAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAA
*
4046437 CGGGATTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
4046455 GATTGTGAAA
Statistics
Matches: 109, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
104 66 0.61
107 43 0.39
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (105 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCCCCGTATGAAAAATTAATATTT
TAGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAA
Found at i:4046505 original size:79 final size:76
Alignment explanation
Indices: 4046337--4046505 Score: 194
Period size: 76 Copynumber: 2.2 Consensus size: 76
4046327 AAATAACGGG
** * * * *
4046337 GTTGGAGTATCCCCTCGGAAATAATGGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAA
1 GTTGGAGTATCCCCTCAAAAATAACGGGATTGGAGTATCCCCGATGAAAAAGTCATGTTTTAGAA
* *
4046402 ATAAAACCGGG
66 ATAAAACCAGA
* * *
4046413 GTTGGAGTGTCCCCTCAAAAATAACGGGATTGGAGTATCCCCGATTGTGAAAAGTCAGTGTTTTG
1 GTTGGAGTATCCCCTCAAAAATAACGGGATTGGAGTATCCCCGA-TG-AAAAAGTCA-TGTTTTA
*
4046478 GAAATAAAATCAGA
63 GAAATAAAACCAGA
*
4046492 GTTGGAATATCCCC
1 GTTGGAGTATCCCC
4046506 GATTGCGAAG
Statistics
Matches: 76, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
76 39 0.51
77 2 0.03
78 6 0.08
79 29 0.38
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (76 bp):
GTTGGAGTATCCCCTCAAAAATAACGGGATTGGAGTATCCCCGATGAAAAAGTCATGTTTTAGAA
ATAAAACCAGA
Found at i:4046505 original size:183 final size:185
Alignment explanation
Indices: 4046159--4046505 Score: 477
Period size: 183 Copynumber: 1.9 Consensus size: 185
4046149 GGATTGGGGC
* *
4046159 ATCCCCTTGGAAATAACGGGGTTGAAGTATCTCCGACTATAAAAAATTGATGTTTTAGAAATAAA
1 ATCCCCTCGGAAATAACGGGGTTGAAGTATCTCC-ACGATAAAAAATTGATGTTTTAGAAATAAA
* * *
4046224 ACCGGGGTTGGAGTATCCCCTCGAAAATAACGAGGTTGGAGTATCGCCGATTATGAGAAATTAAT
65 ACCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATTATGAGAAATCAAT
* * * **
4046289 ATTTTAGAAATAAAGTCGGGGTTGGGGTATCCCCTCGAAAATAACGGGGTTGGAGT
130 ATTTTAGAAATAAAATCAGAGTTGGAATATCCCCTCGAAAATAACGGGGTTGGAGT
* * *
4046345 ATCCCCTCGGAAATAATGGGGTTGGAGTATC-CC-CGATGAAAAATTGATGTTTTAGAAATAAAA
1 ATCCCCTCGGAAATAACGGGGTTGAAGTATCTCCACGATAAAAAATTGATGTTTTAGAAATAAAA
* * *
4046408 CCGGGGTTGGAGTGTCCCCTCAAAAATAACG-GGATTGGAGTATCCCCGATTGTGA-AAAGTCAG
66 CCGGGGTTGGAGTATCCCCTCAAAAATAACGAGG-TTGGAGTATCCCCGATTATGAGAAA-TCAA
* *
4046471 TGTTTTGGAAATAAAATCAGAGTTGGAATATCCCC
129 TATTTTAGAAATAAAATCAGAGTTGGAATATCCCC
4046506 GATTGCGAAG
Statistics
Matches: 141, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
182 5 0.04
183 106 0.75
185 2 0.01
186 28 0.20
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.27
Consensus pattern (185 bp):
ATCCCCTCGGAAATAACGGGGTTGAAGTATCTCCACGATAAAAAATTGATGTTTTAGAAATAAAA
CCGGGGTTGGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCGATTATGAGAAATCAATA
TTTTAGAAATAAAATCAGAGTTGGAATATCCCCTCGAAAATAACGGGGTTGGAGT
Found at i:4046627 original size:130 final size:127
Alignment explanation
Indices: 4046365--4046647 Score: 354
Period size: 130 Copynumber: 2.2 Consensus size: 127
4046355 AAATAATGGG
* *
4046365 GTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCCCCTCA
1 GTTGGAGTATCCCCGATGAAAAATTGATGTTTCAGAAATAAAACCGGGGTTGGAGTATCCCCTCA
* * *
4046430 AAAATAACGGGATTGGAGTATCCCCGATTGTGAAAAGTCAGTGTTTTGGAAATAAAATCAGA
66 AAAATAACGGGATTGGAGTATCCCCGATTATGAAAAGTCAGTGTTTTAGAAATAAAACCAGA
* * * *
4046492 GTTGGAATATCCCCGATTGCGAAGAATTGGTGTTTCAGAAATAAAACTGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGA-T--GAAAAATTGATGTTTCAGAAATAAAACCGGGGTTGGAGTATCCCC
** * *
4046557 TCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAGT-TGATGTTTTAGAAATAAAACC-G
63 TCAAAAATAACGGGATTGGAGTATCCCCGATTATGAAAAGTCAG-TGTTTTAGAAATAAAACCAG
*
4046620 G
127 A
*
4046621 GATTGGAGTATTCCCGAGATGAAAAAT
1 G-TTGGAGTA-TCCC-CGATGAAAAAT
4046648 ATAGAAATTT
Statistics
Matches: 132, Mismatches: 17, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
127 15 0.11
128 1 0.01
129 9 0.07
130 100 0.76
131 5 0.04
132 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (127 bp):
GTTGGAGTATCCCCGATGAAAAATTGATGTTTCAGAAATAAAACCGGGGTTGGAGTATCCCCTCA
AAAATAACGGGATTGGAGTATCCCCGATTATGAAAAGTCAGTGTTTTAGAAATAAAACCAGA
Found at i:4049021 original size:13 final size:13
Alignment explanation
Indices: 4049003--4049028 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4048993 ACAAAGATCG
4049003 ATGTATCGATACA
1 ATGTATCGATACA
4049016 ATGTATCGATACA
1 ATGTATCGATACA
4049029 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4049025 original size:33 final size:33
Alignment explanation
Indices: 4048983--4049048 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
4048973 AACTTCCTAG
***
4048983 ATGTATCGATACAAAGATCGATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
*
4049016 ATGTATCGATACACAGAAAAATGTATCGATACA
1 ATGTATCGATACAAAGAAAAATGTATCGATACA
4049049 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (33 bp):
ATGTATCGATACAAAGAAAAATGTATCGATACA
Found at i:4050153 original size:122 final size:121
Alignment explanation
Indices: 4050018--4050238 Score: 381
Period size: 122 Copynumber: 1.8 Consensus size: 121
4050008 AAAAAGTGTG
*
4050018 TCCTGCTCTTTGAGGATTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT-AAAAGGAAAAGGCGTCC
4050082 TGCCCTTTGAGGACTAGAAGGTGCCACCAACTTGTGCCGACTTTGCAAAAAGAAAGCA
65 TGCCCTTTGAGGACTA-AAGGTGCCACCAACTTGTGCCGACTTTGCAAAAAGAAAGCA
* *
4050140 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
*
4050205 GCCCTTTGAGGACTAAAGGTGCCACCAGCTTGTG
66 GCCCTTTGAGGACTAAAGGTGCCACCAACTTGTG
4050239 TGGGCTTTAA
Statistics
Matches: 94, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
121 22 0.23
122 72 0.77
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (121 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
GCCCTTTGAGGACTAAAGGTGCCACCAACTTGTGCCGACTTTGCAAAAAGAAAGCA
Found at i:4050252 original size:60 final size:61
Alignment explanation
Indices: 4050017--4050251 Score: 291
Period size: 61 Copynumber: 3.9 Consensus size: 61
4050007 AAAAAAGTGT
* * * *
4050017 GTCCTGCTCTTTGAGGATTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGC
1 GTCCTGCCCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAGGC
* ** * *
4050078 GTCCTGCCCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGCCGACTTTGCAAAA-AGAAAGC
1 GTCCTGCCCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTTG-AAAAGAGAAGGC
* *
4050139 ATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGC
1 GTCCTGCCCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAA-GAGAAGGC
* *
4050200 GTCCTGCCCTTTGAGGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAG
1 GTCCTGCCCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAG
4050252 GCATCCTGCT
Statistics
Matches: 149, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
59 5 0.03
60 31 0.21
61 108 0.72
62 5 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (61 bp):
GTCCTGCCCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGAAGGC
Found at i:4050457 original size:63 final size:60
Alignment explanation
Indices: 4050316--4050467 Score: 169
Period size: 63 Copynumber: 2.5 Consensus size: 60
4050306 GGACTAGGAA
* * * *
4050316 GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCAAACTCTTTGAGGACTGAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCATCAAACTCGTTGAGGACTGAAG
* * *** * *
4050376 GTGCCACCAGCTTATGTGGGCTTTAAAAGAAAAAAAGGCATCCTGCTCGTTGAGGATTGGAGG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAG--AAAAAGGCATCAAACTCGTTGAGGACT-GAAG
*
4050439 GTGCCACCAACTCGTGTGGGCTTTAAAAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAG
4050468 GCGTCCTGCT
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
60 27 0.36
62 19 0.25
63 29 0.39
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (60 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCATCAAACTCGTTGAGGACTGAAG
Found at i:4050498 original size:55 final size:55
Alignment explanation
Indices: 4050408--4050543 Score: 200
Period size: 55 Copynumber: 2.5 Consensus size: 55
4050398 TTAAAAGAAA
* * * * **
4050408 AAAAGGCATCCTGCTCGTTGAGGATTGGAGGGTGCCACCAACTCGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT
*
4050463 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT
*
4050518 GAAAGGCGTCCTGCTCTTTGAGGACT
1 AAAAGGCGTCCTGCTCTTTGAGGACT
4050544 AAAGGGTGAA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.26
Consensus pattern (55 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT
Found at i:4050599 original size:272 final size:271
Alignment explanation
Indices: 4050017--4050671 Score: 888
Period size: 272 Copynumber: 2.4 Consensus size: 271
4050007 AAAAAAGTGT
* * * *
4050017 GTCCTGCTCTTTGAGGA-TTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCGT
1 GTCCTGCTCTTTGAGGACTAG-GAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGCGT
* * * ** * ** *
4050080 CCTGCCCTTTGAGGACTAGAAGGTGCCACCAACTTGTGCCGACTTTGCAAAAAGAAAGCATCCTG
64 CCTGCTCTTTGAGGACT-GAAGGTGCCACCAGCTTATGTGGGCTTTAAAAAAAAAAAGCATCCTG
* *
4050145 CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCCCT
128 CTCGTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT--AA-GAGAAGGCGTCCTGCCCT
* * *
4050210 TTGAGGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTTTTTGAGGACAAA
190 TTGAGGACTAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAAA
4050275 AGGCGAAAGGAGAGAGC
255 AGGCGAAAGGAGAGAGC
* *
4050292 GTCCTGCTCTTTGGGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCA
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
**
4050357 AACTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAGAAAAAAAGGCATCCTGC
66 TGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAA-AAAAAAA-GCATCCTGC
* * ** *
4050422 TCGTTGAGGATTGGAGGGTGCCACCAACTCGTGTGGGCTTT-A-A-AAGGCGTCCTGCTCTTTGA
129 TCGTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAGAGAAGGCGTCCTGCCCTTTGA
* * *
4050484 GGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
194 GGACT-AAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGAC-AAAAG
*
4050549 GTGAAAGGAGAGAGC
257 GCGAAAGGAGAGAGC
* *
4050564 GTCCTGCTCTTTAAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCC
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
4050629 TGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTT
66 TGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTT
4050672 GGCGTCCTGC
Statistics
Matches: 337, Mismatches: 37, Indels: 15
0.87 0.10 0.04
Matches are distributed among these distances:
270 23 0.07
271 49 0.15
272 120 0.36
273 1 0.00
274 29 0.09
275 69 0.20
276 46 0.14
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (271 bp):
GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
TGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAAAAAAAAGCATCCTGCTC
GTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAGAGAAGGCGTCCTGCCCTTTGAGG
ACTAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAAAAGGCGA
AAGGAGAGAGC
Found at i:4050719 original size:51 final size:52
Alignment explanation
Indices: 4050621--4050752 Score: 178
Period size: 51 Copynumber: 2.5 Consensus size: 52
4050611 TAAAAGGAGA
* * *
4050621 AGGCATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAGCTTATGTGGGCTTT
1 AGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTATGTGGGCTTT
*
4050672 -GGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTATTTGGGCTTT
1 AGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTATGTGGGCTTT
*
4050723 GAAAGGCGTCCTACTCTTTGAGGACTAAAA
1 ---AGGCGTCCTGCTCTTTGAGGACTAAAA
4050753 AGTGAAAGGA
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
50 21 0.30
51 25 0.35
55 25 0.35
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.29
Consensus pattern (52 bp):
AGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTATGTGGGCTTT
Found at i:4050742 original size:205 final size:207
Alignment explanation
Indices: 4050359--4050764 Score: 570
Period size: 205 Copynumber: 2.0 Consensus size: 207
4050349 AGGCGTCAAA
* *
4050359 CTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAGAAAAAAAGGCATCCTGCTC
1 CTCTTTAAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAG-AAAAAAGGCATCCTGCTC
* * *
4050424 GTTGAGGATTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACT
65 GTTGAGGACTGGAAGGTGCCACCAACTCATGTGGGCTTT---AGGCGTCCTGCTCTTTGAGGACT
* * **
4050489 GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTGAA
127 GAAAAGTGCCACCAACTTATGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTAAAAAGTGAA
4050554 AGGAGAGAGCGTCCTG
192 AGGAGAGAGCGTCCTG
* * *
4050570 CTCTTTAAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAG-GAGAAGGCATCCTGCT
1 CTCTTTAAGGACT--GAAGGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAAGGCATCCTGCT
* * *
4050633 CTTTGAGGACT-GAAGGTGCCACCAGCTTATGTGGGCTTT-GGCGTCCTGCTCTTTGAGGACT-A
64 CGTTGAGGACTGGAAGGTGCCACCAACTCATGTGGGCTTTAGGCGTCCTGCTCTTTGAGGACTGA
*
4050695 AAAGGTGCCACCAACTTATTTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTAAAAAGTGAAA
129 AAA-GTGCCACCAACTTATGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTAAAAAGTGAAA
4050760 GGAGA
193 GGAGA
4050765 AAGTTTAGAT
Statistics
Matches: 176, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
204 4 0.02
205 83 0.47
209 24 0.14
210 23 0.13
211 12 0.07
212 27 0.15
213 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (207 bp):
CTCTTTAAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAAAGGCATCCTGCTCG
TTGAGGACTGGAAGGTGCCACCAACTCATGTGGGCTTTAGGCGTCCTGCTCTTTGAGGACTGAAA
AGTGCCACCAACTTATGTGGGCTTTGAAAGGCGTCCTACTCTTTGAGGACTAAAAAGTGAAAGGA
GAGAGCGTCCTG
Found at i:4051749 original size:1 final size:1
Alignment explanation
Indices: 4051730--4051792 Score: 54
Period size: 1 Copynumber: 63.0 Consensus size: 1
4051720 TTTTCTCTCC
* * * * * * * *
4051730 TTTTTATTTGTTTTATTTTTTTGTTTTTTTTGTTTTTTTTTTGTTTTTGTTTTTGTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
4051793 AGAAGAGAAG
Statistics
Matches: 46, Mismatches: 16, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (1 bp):
T
Found at i:4051756 original size:6 final size:6
Alignment explanation
Indices: 4051736--4051789 Score: 62
Period size: 6 Copynumber: 9.5 Consensus size: 6
4051726 CTCCTTTTTA
*
4051736 TTTGTT TTAT-TT TTT-TG TTT-TT TTTGTT TTT-TT TTTGTT TTTGTT
1 TTTGTT TT-TGTT TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT TTTGTT
4051781 TTTGTT TTT
1 TTTGTT TTT
4051790 TTTAGAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 14 0.33
6 28 0.65
7 1 0.02
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.87
Consensus pattern (6 bp):
TTTGTT
Found at i:4051759 original size:26 final size:26
Alignment explanation
Indices: 4051730--4051792 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
4051720 TTTTCTCTCC
4051730 TTTTTATTTGTTTTATT-TTTTTGTTT
1 TTTTTATTT-TTTTATTGTTTTTGTTT
* *
4051756 TTTTTGTTTTTTTTTTGTTTTTGTTT
1 TTTTTATTTTTTTATTGTTTTTGTTT
*
4051782 TTGTT-TTTTTT
1 TTTTTATTTTTT
4051793 AGAAGAGAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 12 0.36
26 21 0.64
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (26 bp):
TTTTTATTTTTTTATTGTTTTTGTTT
Found at i:4051760 original size:17 final size:17
Alignment explanation
Indices: 4051730--4051793 Score: 69
Period size: 17 Copynumber: 3.9 Consensus size: 17
4051720 TTTTCTCTCC
*
4051730 TTTTTATTTGTTTTATT
1 TTTTTGTTTGTTTTATT
* *
4051747 TTTTTGTTTTTTTTGTT
1 TTTTTGTTTGTTTTATT
*
4051764 TTTTT-TTTGTTTT-TG
1 TTTTTGTTTGTTTTATT
*
4051779 TTTTTGTTTTTTTTA
1 TTTTTGTTTGTTTTA
4051794 GAAGAGAAGG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
15 6 0.15
16 14 0.36
17 19 0.49
ACGTcount: A:0.05, C:0.00, G:0.09, T:0.86
Consensus pattern (17 bp):
TTTTTGTTTGTTTTATT
Found at i:4051773 original size:33 final size:32
Alignment explanation
Indices: 4051730--4051792 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
4051720 TTTTCTCTCC
*
4051730 TTTTTATTTGTTTTATTTTTTTGTTTTTTTTGT
1 TTTTTATTTGTTTT-TGTTTTTGTTTTTTTTGT
*
4051763 TTTTTTTTTGTTTTTGTTTTTGTTTTTTTT
1 TTTTTATTTGTTTTTGTTTTTGTTTTTTTT
4051793 AGAAGAGAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.03, C:0.00, G:0.10, T:0.87
Consensus pattern (32 bp):
TTTTTATTTGTTTTTGTTTTTGTTTTTTTTGT
Found at i:4055113 original size:13 final size:13
Alignment explanation
Indices: 4055095--4055119 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4055085 CATAAAATGT
4055095 TGTATCGATACAA
1 TGTATCGATACAA
4055108 TGTATCGATACA
1 TGTATCGATACA
4055120 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4055117 original size:33 final size:33
Alignment explanation
Indices: 4055075--4055144 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
4055065 TTCAACGATT
4055075 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
4055108 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
4055141 TGTA
1 TGTA
4055145 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:4055203 original size:13 final size:13
Alignment explanation
Indices: 4055185--4055209 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4055175 ATTACTCACA
4055185 TGTATCGATACAT
1 TGTATCGATACAT
4055198 TGTATCGATACA
1 TGTATCGATACA
4055210 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Done.