Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold55
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4293517
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.26
Warning! 910309 characters in sequence are not A, C, G, or T
File 8 of 21
Found at i:2081759 original size:79 final size:79
Alignment explanation
Indices: 2081619--2081843 Score: 245
Period size: 79 Copynumber: 2.8 Consensus size: 79
2081609 TTTACTTTAC
* * ** * *
2081619 CTTAGGAGCATGTTAGTATTTTCACATCGAGACATGTGCATTAAAGCCATTTTAATGAGTTTTAT
1 CTTAAGAGCATGTTGGTATTTTCACATCGAGACACATGCATTAAAGCCATTTTAATAAGTTTCAT
2081684 GAGAAATCC-AAGTT
66 GAGAAATCCGAA-TT
* * * * *
2081698 CTTAAGAGCATGTTGGTGTTTTCATATTGAGACACATGCATTAAGGCTATTTTAATAAGTTTCAT
1 CTTAAGAGCATGTTGGTATTTTCACATCGAGACACATGCATTAAAGCCATTTTAATAAGTTTCAT
2081763 GAGAAATCCGAATT
66 GAGAAATCCGAATT
** * ** * * * *
2081777 CTTAAGAGGTTGTTGGTATTTTCACAGCCGAGACATGTACATTAAAGTCATTTTAGTGAGTTTCA
1 CTTAAGAGCATGTTGGTATTTTCACA-TCGAGACACATGCATTAAAGCCATTTTAATAAGTTTCA
2081842 TG
65 TG
2081844 TTAGTCTTTA
Statistics
Matches: 119, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
79 87 0.73
80 32 0.27
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.36
Consensus pattern (79 bp):
CTTAAGAGCATGTTGGTATTTTCACATCGAGACACATGCATTAAAGCCATTTTAATAAGTTTCAT
GAGAAATCCGAATT
Found at i:2085062 original size:2 final size:2
Alignment explanation
Indices: 2085055--2085079 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2085045 ACACCTTCAA
2085055 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2085080 AATAATAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2096678 original size:21 final size:20
Alignment explanation
Indices: 2096644--2096686 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
2096634 TATTAAAAAG
*
2096644 TTAGCTAATGAAAATAATGAA
1 TTAGCTAATGAAAACAA-GAA
2096665 TTAGCTAA-GAAAAACAAGAA
1 TTAGCTAATG-AAAACAAGAA
2096685 TT
1 TT
2096687 TGCATGATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.53, C:0.07, G:0.14, T:0.26
Consensus pattern (20 bp):
TTAGCTAATGAAAACAAGAA
Found at i:2096685 original size:20 final size:21
Alignment explanation
Indices: 2096644--2096686 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
2096634 TATTAAAAAG
*
2096644 TTAGCTAATGAAAATAATGAA
1 TTAGCTAATGAAAATAAAGAA
2096665 TTAGCTAA-GAAAA-ACAAGAA
1 TTAGCTAATGAAAATA-AAGAA
2096685 TT
1 TT
2096687 TGCATGATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 11 0.55
21 8 0.40
ACGTcount: A:0.53, C:0.07, G:0.14, T:0.26
Consensus pattern (21 bp):
TTAGCTAATGAAAATAAAGAA
Found at i:2102472 original size:22 final size:22
Alignment explanation
Indices: 2102447--2102488 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
2102437 TTTTTTGATA
2102447 TTTGACAAAGGACGAGAAATCC
1 TTTGACAAAGGACGAGAAATCC
* **
2102469 TTTGATAAAGGGGGAGAAAT
1 TTTGACAAAGGACGAGAAAT
2102489 AATTTATCTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.10, G:0.29, T:0.21
Consensus pattern (22 bp):
TTTGACAAAGGACGAGAAATCC
Found at i:2103202 original size:20 final size:20
Alignment explanation
Indices: 2103174--2103226 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
2103164 TACCACCATT
* *
2103174 TGTAACGATACATGGT-ACAA
1 TGTATCGATACATGATGA-AA
*
2103194 TGTATCGATACATGATGAAT
1 TGTATCGATACATGATGAAA
2103214 TGTATCGATACAT
1 TGTATCGATACAT
2103227 TACTTGTAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATGATGAAA
Found at i:2108214 original size:13 final size:13
Alignment explanation
Indices: 2108196--2108227 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2108186 CCGTTTGAGT
*
2108196 CAATGTATCGATA
1 CAATGTATCGACA
2108209 CAATGTATCGACA
1 CAATGTATCGACA
2108222 CAATGT
1 CAATGT
2108228 GCCATGTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (13 bp):
CAATGTATCGACA
Found at i:2108296 original size:20 final size:20
Alignment explanation
Indices: 2108271--2108309 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
2108261 TACTACCAGT
2108271 TTCATGTATCGATACATTTG
1 TTCATGTATCGATACATTTG
2108291 TTCATGTATCGATACATTT
1 TTCATGTATCGATACATTT
2108310 ATACATCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.15, G:0.13, T:0.46
Consensus pattern (20 bp):
TTCATGTATCGATACATTTG
Found at i:2115181 original size:20 final size:20
Alignment explanation
Indices: 2115158--2115230 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2115148 ACAATTCAAA
2115158 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2115178 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2115199 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2115219 GTATCGATACAT
1 GTATCGATACAT
2115231 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2115202 original size:21 final size:21
Alignment explanation
Indices: 2115176--2115251 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
2115166 ACATGTTGCA
2115176 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2115197 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2115217 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
2115238 TTGTATCGATACAT
1 ATGTATCGATACAT
2115252 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2115209 original size:41 final size:41
Alignment explanation
Indices: 2115158--2115251 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
2115148 ACAATTCAAA
*
2115158 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
2115199 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2115240 GTATCGATACAT
1 GTATCGATACAT
2115252 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2121464 original size:20 final size:21
Alignment explanation
Indices: 2121385--2121463 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
2121375 AATGTCCAAA
*
2121385 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
2121405 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
2121430 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
2121450 TTGTATCGATACAT
1 ATGTATCGATACAT
2121464 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:2121468 original size:13 final size:13
Alignment explanation
Indices: 2121450--2121488 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
2121440 ACATTTTTCT
2121450 TTGTATCGATACA
1 TTGTATCGATACA
2121463 TTGTATCGATACA
1 TTGTATCGATACA
*
2121476 CTGTATCGATACA
1 TTGTATCGATACA
2121489 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2123956 original size:20 final size:20
Alignment explanation
Indices: 2123933--2124005 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2123923 ACAATTCAAA
2123933 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2123953 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2123974 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2123994 GTATCGATACAT
1 GTATCGATACAT
2124006 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2123977 original size:21 final size:21
Alignment explanation
Indices: 2123951--2124026 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
2123941 ACATGTTGCA
2123951 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2123972 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2123992 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
2124013 TTGTATCGATACAT
1 ATGTATCGATACAT
2124027 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2123984 original size:41 final size:41
Alignment explanation
Indices: 2123933--2124026 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
2123923 ACAATTCAAA
*
2123933 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
2123974 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2124015 GTATCGATACAT
1 GTATCGATACAT
2124027 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2124083 original size:13 final size:13
Alignment explanation
Indices: 2124065--2124090 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2124055 TACATCAAGT
2124065 ATGTATCGATACA
1 ATGTATCGATACA
2124078 ATGTATCGATACA
1 ATGTATCGATACA
2124091 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2125810 original size:52 final size:49
Alignment explanation
Indices: 2125754--2126462 Score: 363
Period size: 49 Copynumber: 15.6 Consensus size: 49
2125744 TGTACTGAGA
** *
2125754 CAAGGCCAGTAACATTGGGCTTAGAA-ATGTTAAAGATGCCAATATGCTGATT
1 CAAGGCCAGCGACATTGGGCTTA-AAGATG---AAGGTGCCAATATGCTGATT
* * * * *
2125806 CAAGGCTAACGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* *
2125855 CAAGGCCAGCGACATTGGTCTTAAAGATGGTTAAGGTGCCAATGTGCTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGAT-G--AAGGTGCCAATATGCTGATT
* * * *
2125907 TAAGGCCAACGACATCGGTCTTAAAGATGAAGGTGCCAATATGCTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* * *
2125956 CAAGGCCAGCGATATTGGGC-T-----T--A--TGCTAATGTGCTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* *
2125995 CAAGGCCAGCGATATTGGGC-T-----T--A--TGCCAATGTGCTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* * * * *
2126034 CGAGGCCAGCGACATTAGTCTTAGAGA-CAAGGTGCCAATATGCTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* * * * *
2126082 CAAGGCCCAGCGATAATGGGC-T-----T----GTGCCAATGTCCTGATG
1 CAAGG-CCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* * * * *
2126122 CAAGGCCAGTGACATTGGTCTTAAAGATAAAGATGTCAATATGCTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* * *
2126171 CAAGGCCAGCGACATTGGAC-T-----T----GTGCCAATGTGCTGATG
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* * *
2126210 CAAGGCTAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* * * *
2126259 CAAGGCCAGCGATATTGGAC-T-----T----GTGCCAATGTACTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* * * * *
2126298 CAAGGCTAGCGGCATTAGTCTTAAAGATAAAGGTGCCAATATGCTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* * * * *
2126347 CAAGGACAGCGATATTAGAC-T-----T----GTGCCAATGTGCTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* * * *
2126386 CAAGGCCAACGACATTGGTCTTAAAGATAAAGGTGCCAATATGTTGATT
1 CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
* *
2126435 CAAGGCCAGCGATATTGGACTTAGAAGA
1 CAAGGCCAGCGACATTGGGCTTA-AAGA
2126463 AGACGCCACC
Statistics
Matches: 516, Mismatches: 84, Indels: 116
0.72 0.12 0.16
Matches are distributed among these distances:
39 171 0.33
40 24 0.05
41 1 0.00
43 4 0.01
45 4 0.01
46 1 0.00
48 24 0.05
49 214 0.41
50 5 0.01
51 3 0.01
52 65 0.13
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (49 bp):
CAAGGCCAGCGACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
Found at i:2125895 original size:101 final size:101
Alignment explanation
Indices: 2125738--2125978 Score: 315
Period size: 101 Copynumber: 2.4 Consensus size: 101
2125728 TGAAGAAGAA
* ** **
2125738 TGCCAATGTACTGAGACAAGGCCAGTAACATTGGGCTTAGAAATGTTAAAGATGCCAATATGCTG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAGAAATGTTAAAGATGCCAATATGCTG
* * *
2125803 ATTCAAGGCTAACGATATTGGACTTAAAGATGAAGG
66 ATTCAAGGCCAACGACATCGGACTTAAAGATGAAGG
* * *
2125839 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTA-AAGATGGTT-AAGGTGCCAATGTGC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAGAA-AT-GTTAAAGATGCCAATATGC
* *
2125902 TGATTTAAGGCCAACGACATCGGTCTTAAAGATGAAGG
64 TGATTCAAGGCCAACGACATCGGACTTAAAGATGAAGG
* *
2125940 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTA
2125979 TGCTAATGTG
Statistics
Matches: 122, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
100 2 0.02
101 117 0.96
102 3 0.02
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (101 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAGAAATGTTAAAGATGCCAATATGCTG
ATTCAAGGCCAACGACATCGGACTTAAAGATGAAGG
Found at i:2126002 original size:39 final size:39
Alignment explanation
Indices: 2125940--2126408 Score: 218
Period size: 39 Copynumber: 11.0 Consensus size: 39
2125930 AAGATGAAGG
*
2125940 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTA
*
2125979 TGCTAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTA
* * * *
2126018 TGCCAATGTGCTGATTCGAGGCCAGCGACATTAGTCTTAGAGACAA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTT-------A
* * *
2126064 GGTGCCAATATGCTGATTCAAGGCCCAGCGATAATGGGCTTG
1 --TGCCAATGTGCTGATTCAAGG-CCAGCGATATTGGGCTTA
* * * * *
2126106 TGCCAATGTCCTGATGCAAGGCCAGTGACATTGGTCTTAAAGATAAAGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGC-T-----T----A
* * * * *
2126155 TGTCAATATGCTGATTCAAGGCCAGCGACATTGGACTTG
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTA
* * * *
2126194 TGCCAATGTGCTGATGCAAGGCTAGCGACATTGGTCTTAAAGATAAA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGC-T-----T--A
* * *
2126241 GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTG
1 --TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTA
* * ** * *
2126282 TGCCAATGTACTGATTCAAGGCTAGCGGCATTAGTCTTAAAGATAAA
1 TGCCAATGTGCTGATTCAAGGCCAGC-G-A-TA---TT-GGGCT-TA
* * * * *
2126329 GGTGCCAATATGCTGATTCAAGGACAGCGATATTAGACTTG
1 --TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTA
* * *
2126370 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTA
1 TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTA
2126409 AAGATAAAGG
Statistics
Matches: 324, Mismatches: 66, Indels: 80
0.69 0.14 0.17
Matches are distributed among these distances:
39 167 0.52
40 21 0.06
41 1 0.00
42 4 0.01
43 4 0.01
45 4 0.01
46 4 0.01
47 1 0.00
48 22 0.07
49 96 0.30
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (39 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGGCTTA
Found at i:2126136 original size:88 final size:88
Alignment explanation
Indices: 2125987--2126456 Score: 708
Period size: 88 Copynumber: 5.3 Consensus size: 88
2125977 TATGCTAATG
* * * *
2125987 TGCTGATTCAAGGCCAGCGATATTGGGCTTATGCCAATGTGCTGATTCGAGGCCAGCGACATTAG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
* *
2126052 TCTTAGAGA-CAAGGTGCCAATA
66 TCTTAAAGATAAAGGTGCCAATA
* * * * *
2126074 TGCTGATTCAAGGCCCAGCGATAATGGGCTTGTGCCAATGTCCTGATGCAAGGCCAGTGACATTG
1 TGCTGATTCAAGG-CCAGCGATATTGGACTTGTGCCAATGTGCTGATTCAAGGCCAGCGACATTG
* *
2126139 GTCTTAAAGATAAAGATGTCAATA
65 GTCTTAAAGATAAAGGTGCCAATA
* * *
2126163 TGCTGATTCAAGGCCAGCGACATTGGACTTGTGCCAATGTGCTGATGCAAGGCTAGCGACATTGG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
2126228 TCTTAAAGATAAAGGTGCCAATA
66 TCTTAAAGATAAAGGTGCCAATA
* * * *
2126251 TGCTGATTCAAGGCCAGCGATATTGGACTTGTGCCAATGTACTGATTCAAGGCTAGCGGCATTAG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
2126316 TCTTAAAGATAAAGGTGCCAATA
66 TCTTAAAGATAAAGGTGCCAATA
* * *
2126339 TGCTGATTCAAGGACAGCGATATTAGACTTGTGCCAATGTGCTGATTCAAGGCCAACGACATTGG
1 TGCTGATTCAAGGCCAGCGATATTGGACTTGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
2126404 TCTTAAAGATAAAGGTGCCAATA
66 TCTTAAAGATAAAGGTGCCAATA
*
2126427 TGTTGATTCAAGGCCAGCGATATTGGACTT
1 TGCTGATTCAAGGCCAGCGATATTGGACTT
2126457 AGAAGAAGAC
Statistics
Matches: 347, Mismatches: 34, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
87 13 0.04
88 311 0.90
89 23 0.07
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (88 bp):
TGCTGATTCAAGGCCAGCGATATTGGACTTGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
TCTTAAAGATAAAGGTGCCAATA
Found at i:2126521 original size:29 final size:31
Alignment explanation
Indices: 2126469--2126527 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
2126459 AAGAAGACGC
2126469 CACCAACTTGTGTGGGCTTTTG-AAAGGGTTG
1 CACCAACTTGTGT-GGCTTTTGAAAAGGGTTG
2126500 CACCAACTTGTGT-GCTTTTGAAAAGGGT
1 CACCAACTTGTGTGGCTTTTGAAAAGGGT
2126528 GCCACTGACT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 7 0.26
30 7 0.26
31 13 0.48
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (31 bp):
CACCAACTTGTGTGGCTTTTGAAAAGGGTTG
Found at i:2126591 original size:60 final size:61
Alignment explanation
Indices: 2126520--2126696 Score: 250
Period size: 62 Copynumber: 2.9 Consensus size: 61
2126510 TGTGCTTTTG
* * *
2126520 AAAAGGGTGCCACTGACTTGTGGGCTTAAAAGGAGAAAGA-TGCCACGAAGTTGTAGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAGAAAGAGTGCCACGAAGTTGTAGACTT
* * *
2126580 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAATAGTGCCACGAAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGG-AGAAAGAGTGCCACGAAGTTGTAGACTT
* *
2126642 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG-GAAAAGAGTGCCACGGAGTTGT
1 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAG-AAAGAGTGCCACGAAGTTGT
2126697 GGGCTTTAAA
Statistics
Matches: 104, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
60 30 0.29
61 23 0.22
62 51 0.49
ACGTcount: A:0.34, C:0.14, G:0.32, T:0.20
Consensus pattern (61 bp):
AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAGAAAGAGTGCCACGAAGTTGTAGACTT
Found at i:2126592 original size:27 final size:27
Alignment explanation
Indices: 2126560--2126675 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 27
2126550 AGGAGAAAGA
*
2126560 TGCCACGAAGTTGTAGACTTAAAAGGG
1 TGCCACGAAGTTGTGGACTTAAAAGGG
2126587 TGCCAC-AGAGTTGTGGACTTAAAAGGAAAAAATAG
1 TGCCACGA-AGTTGTGGACTTAAAAGG--------G
2126622 TGCCACGAAGTTGTGGACTTAAAAGGG
1 TGCCACGAAGTTGTGGACTTAAAAGGG
*
2126649 TGCCACGGAGTTGTGGACTTAAAAGGG
1 TGCCACGAAGTTGTGGACTTAAAAGGG
2126676 AAAAGAGTGC
Statistics
Matches: 77, Mismatches: 2, Indels: 20
0.78 0.02 0.20
Matches are distributed among these distances:
26 1 0.01
27 50 0.65
35 25 0.32
36 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.22
Consensus pattern (27 bp):
TGCCACGAAGTTGTGGACTTAAAAGGG
Found at i:2126651 original size:62 final size:61
Alignment explanation
Indices: 2126520--2126844 Score: 271
Period size: 68 Copynumber: 5.1 Consensus size: 61
2126510 TGTGCTTTTG
* * * * *
2126520 AAAAGGGTGCCACTGACTTGTGGGCTTAAAAGGAGAAAGA-TGCCACGAAGTTGTAGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGACTT
*
2126580 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAATAGTGCCACGAAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGG-AAAAAGAGTGCCACGAAGTTGTGGACTT
* * * *
2126642 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGAC-TT
* * * * * *
2126704 AAAAAGAAAAAGGTGCCA-TGAAGTTGTAGACTTAAAAGGAAAAAGAGTACCACGGAGTCGTGGG
1 -AAAAG-----GGTGCCACAG-AGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGA
2126768 CTTT
59 C-TT
** * * * *
2126772 AAAAAGAAAAAGTGTGCCATGGAGTCGTGGGCTTAAAAAG-AAAAGA-TGCCACGGAGTTGTGGA
1 -AAAAG-----G-GTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGA
2126835 CTT
59 CTT
2126838 AAAAGGG
1 AAAAGGG
2126845 AAAAGAATGC
Statistics
Matches: 229, Mismatches: 24, Indels: 25
0.82 0.09 0.09
Matches are distributed among these distances:
59 1 0.00
60 31 0.14
61 27 0.12
62 53 0.23
63 5 0.02
65 5 0.02
66 2 0.01
67 16 0.07
68 68 0.30
69 20 0.09
70 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.31, T:0.20
Consensus pattern (61 bp):
AAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGAGTGCCACGAAGTTGTGGACTT
Found at i:2126686 original size:34 final size:34
Alignment explanation
Indices: 2126642--2126946 Score: 296
Period size: 34 Copynumber: 9.0 Consensus size: 34
2126632 TTGTGGACTT
*
2126642 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGG
* * *
2126676 AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGAC-TTAAAAGGG
* * * *
2126711 AAAAG-GTGCCATGAAGTTGTAGACTTAAAAGGA
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGG
* * * * *
2126744 AAAAGAGTACCACGGAGTCGTGGGCTTTAAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGAC-TTAAAAGGG
* * * * *
2126779 AAAAGTGTGCCATGGAGTCGTGGGCTTAAAA-AG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGG
2126812 AAAAGA-TGCCACGGAGTTGTGGACTTAAAAGGG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGG
* * * * *
2126845 AAAAGAATGCCACGAAGTTGTGGGCTTTAAAAAGA
1 AAAAGAGTGCCACGGAGTTGTGGAC-TTAAAAGGG
**
2126880 AAAAG-GTGCCATAGAGTTGTGGACTTAAAAGGG
1 AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGG
* *
2126913 ACAAAGA-TGCCACAGAGTTGTGGACATAAAAGGG
1 A-AAAGAGTGCCACGGAGTTGTGGACTTAAAAGGG
2126947 TGCCAGAGAG
Statistics
Matches: 224, Mismatches: 39, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
32 21 0.09
33 33 0.15
34 116 0.52
35 54 0.24
ACGTcount: A:0.38, C:0.12, G:0.31, T:0.19
Consensus pattern (34 bp):
AAAAGAGTGCCACGGAGTTGTGGACTTAAAAGGG
Found at i:2127023 original size:30 final size:30
Alignment explanation
Indices: 2126976--2128050 Score: 839
Period size: 31 Copynumber: 34.2 Consensus size: 30
2126966 TCGAAAAGAA
* *
2126976 AAAAGGTGCCA-TAGAGTCGTGGACTTTGCG
1 AAAAGATGCCACT-GAGTCGTGGACTTTGAG
* * * *
2127006 AAGAGATGCCACCGAGTCATGGACTTTGGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
2127036 AAAAGATTGCCACTGAGTCGTGGACTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTG-AG
2127068 AAAAGATTGCCACTGAGTCGTGGACTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTG-AG
*** *
2127100 AAAAGATGCCACTGAGTCACAGACTTTGAAAATA
1 AAAAGATGCCACTGAGTCGTGGACTTTG---A-G
* * * *
2127134 AAAAGGTTCCACAGAGTCGTGGACTTTGGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* * *
2127164 AAGAGATTGCCACTGAGTCATGGACTTCGA-
1 AAAAGA-TGCCACTGAGTCGTGGACTTTGAG
* *
2127194 AAAGAGATGCCACTGAGTTGTAGACTTTGAAG
1 AAA-AGATGCCACTGAGTCGTGGACTTTG-AG
* * **
2127226 AAAAGATGCCACAGAGTTGTGGACTTAAAAGG
1 AAAAGATGCCACTGAGTCGTGGACTT-TGA-G
* * *
2127258 AACACGGTGCCA-TGGAGTTGTGGACTTTGAG
1 AA-AAGATGCCACT-GAGTCGTGGACTTTGAG
* *
2127289 AAGAGATTGCCATTGAGTCGTGGACTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTG-AG
* * * *
2127321 AAAAGGATGCCATTAAGTCATGGACTTAGA-
1 AAAA-GATGCCACTGAGTCGTGGACTTTGAG
*
2127351 AAAGAGATGCCACTGAGTTGTGGACTTTGTAG
1 AAA-AGATGCCACTGAGTCGTGGACTTTG-AG
*
2127383 AAAAGATTGCCACTGAGTCATGGACTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTG-AG
*
2127415 AAAAAAGATGCCACTGAGTCGTGGAGTTTGAG
1 --AAAAGATGCCACTGAGTCGTGGACTTTGAG
* * *
2127447 AAAAGAGATGCCACTGAGTCATGGGCTTTGGG
1 -AAA-AGATGCCACTGAGTCGTGGACTTTGAG
* * * *
2127479 ACAAGATGCCATTGAGTCATGGACTTTGGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* * * *
2127509 AAGATATGCCACTGAGTCATGGACTTTGGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* * * *
2127539 AAGACATTGCCACTAAGTCATGGACTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTG-AG
*
2127571 AAAATATGCCACTGAGTCGTGGACTTTGGGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTT--G-AG
* * * **
2127604 AAAAGATGCCACGGAGTTGTAGACTTAAAAGG
1 AAAAGATGCCACTGAGTCGTGGACTT-TGA-G
* * * *
2127636 AACAAGGTGCCACGGAGTTGTGGACTTTGAA
1 AA-AAGATGCCACTGAGTCGTGGACTTTGAG
2127667 AAAAGATTGCCACTGAGTCGTGGACTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTG-AG
*
2127699 AAAAAAGATGCCACTGAGTCGTGGACTTAGA-
1 --AAAAGATGCCACTGAGTCGTGGACTTTGAG
* *
2127730 AAAGAGATGCCACTAAGTTGTGGACTTTGTAG
1 AAA-AGATGCCACTGAGTCGTGGACTTTG-AG
* * *
2127762 AAAAGATTGCCCCTAAGTCATGGACTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTG-AG
2127794 AAAAAAGATGCCACTGAGTCGTGGACTTTGAG
1 --AAAAGATGCCACTGAGTCGTGGACTTTGAG
* *
2127826 AAAAGAGATGCCACTGAGTCATGGGCTTT-AGG
1 -AAA-AGATGCCACTGAGTCGTGGACTTTGA-G
* * *
2127858 ACAAGATGCCACTGAGTCATGGACTTTGGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* * * *
2127888 AAGAGATGCCACTGAGTCATGGAATTTGGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* *
2127918 AAGAGATTGCCACTGAGTCATGGACTTTGAAG
1 AAAAGA-TGCCACTGAGTCGTGGACTTTG-AG
* * *
2127950 AAAAAATGCCACTGAGCCGTGGACTTTGGG
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* * * * *
2127980 AAGAGAGGCCATTGAGTCATGGACTTTGGGGAA
1 AAAAGATGCCACTGAGTCGTGGACTTT---GAG
* *
2128013 AAAAGATGACACTGAGTTGTGGACTTTGAAG
1 AAAAGATGCCACTGAGTCGTGGACTTTG-AG
2128044 AAAAGAT
1 AAAAGAT
2128051 TTGAAGAATT
Statistics
Matches: 860, Mismatches: 134, Indels: 101
0.79 0.12 0.09
Matches are distributed among these distances:
29 3 0.00
30 237 0.28
31 240 0.28
32 186 0.22
33 154 0.18
34 40 0.05
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (30 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAG
Found at i:2127223 original size:95 final size:91
Alignment explanation
Indices: 2126989--2127977 Score: 743
Period size: 95 Copynumber: 10.5 Consensus size: 91
2126979 AGGTGCCATA
* * * * **
2126989 GAGTCGTGGACTTTGCGAAGAGATGCCACCGAGTCATGGACTTTG--GGAAAAGATTGCCACTGA
1 GAGTCATGGACTTTG-AAAAAGATGCCACTGAGTCATGGACTTTGAAAAAAAAGA-TGCCACTGA
* *
2127052 GTCGTGGACTTTGAAGAAAAGATTGCCACT
64 GTCGTGGACTTTG-GGAAGAGA-TGCCACT
* ** * * *
2127082 GAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCACAGACTTTGAAAATAAAAAGGTTCCACA
1 GAGTCATGGACTTTG-A-AAAAGATGCCACTGAGTCATGGACTTTG-AAA-AAAAAGATGCCACT
2127147 GAGTCGTGGACTTTGGGAAGAGATTGCCACT
62 GAGTCGTGGACTTTGGGAAGAGA-TGCCACT
* ** * * *
2127178 GAGTCATGGACTTCGAAAAGAGATGCCACTGAGTTGTAGACTTTG-AAGAAAAGATGCCACAGAG
1 GAGTCATGGACTTTGAAAA-AGATGCCACTGAGTCATGGACTTTGAAAAAAAAGATGCCACTGAG
* ** * *
2127242 TTGTGGACTTAAAAGGAACACGGTGCCA-T
65 TCGTGGACTT--TGGGAAGA-GATGCCACT
** * * * * * * *
2127271 GGAGTTGTGGACTTTGAGAAGAGATTGCCATTGAGTCGTGGACTTTGAAGAAAAGGATGCCATTA
1 -GAGTCATGGACTTTGA-AAAAGA-TGCCACTGAGTCATGGACTTTGAAAAAAAAGATGCCACTG
* * **
2127336 AGTCATGGACTTAGAAAAGAGATGCCACT
63 AGTCGTGGACTTTGGGAAGAGATGCCACT
**
2127365 GAGTTGTGGACTTTGTAGAAAAGATTGCCACTGAGTCATGGACTTTGAAGAAAAAAGATGCCACT
1 GAGTCATGGACTTTG-A-AAAAGA-TGCCACTGAGTCATGGACTTTGAA-AAAAAAGATGCCACT
* *
2127430 GAGTCGTGGAGTTTGAGAAAAGAGATGCCACT
62 GAGTCGTGGACTTTG-G-GAAGAGATGCCACT
* * * * ** * *
2127462 GAGTCATGGGCTTTGGGACAAGATGCCATTGAGTCATGGACTTTG--GGAAGATATGCCACTGAG
1 GAGTCATGGACTTT-GAAAAAGATGCCACTGAGTCATGGACTTTGAAAAAAAAGATGCCACTGAG
* *
2127525 TCATGGACTTTGGGAAGACATTGCCACT
65 TCGTGGACTTTGGGAAGAGA-TGCCACT
* * * * * *
2127553 AAGTCATGGACTTTGAAGAAAATATGCCACTGAGTCGTGGACTTTGGGAAGAAAAGATGCCACGG
1 GAGTCATGGACTTTG-A-AAAAGATGCCACTGAGTCATGGACTTT-GAAAAAAAAGATGCCACTG
* * ** * * *
2127618 AGTTGTAGACTTAAAAGGAACAAGGTGCCACG
63 AGTCGTGGACTT--TGGGAA-GAGATGCCACT
** *
2127650 GAGTTGTGGACTTTGAAAAAAGATTGCCACTGAGTCGTGGACTTTGAAGAAAAAAGATGCCACTG
1 GAGTCATGGACTTTG-AAAAAGA-TGCCACTGAGTCATGGACTTTGAA-AAAAAAGATGCCACTG
* **
2127715 AGTCGTGGACTTAGAAAAGAGATGCCACT
63 AGTCGTGGACTTTGGGAAGAGATGCCACT
* ** * *
2127744 AAGTTGTGGACTTTGTAGAAAAGATTGCCCCTAAGTCATGGACTTTGAAGAAAAAAGATGCCACT
1 GAGTCATGGACTTTG-A-AAAAGA-TGCCACTGAGTCATGGACTTTGAA-AAAAAAGATGCCACT
*
2127809 GAGTCGTGGACTTTGAGAAAAGAGATGCCACT
62 GAGTCGTGGACTTTG-G-GAAGAGATGCCACT
* * * ** *
2127841 GAGTCATGGGCTTTAGGACAAGATGCCACTGAGTCATGGACTTTG--GGAAGAGATGCCACTGAG
1 GAGTCATGGACTTT-GAAAAAGATGCCACTGAGTCATGGACTTTGAAAAAAAAGATGCCACTGAG
* *
2127904 TCATGGAATTTGGGAAGAGATTGCCACT
65 TCGTGGACTTTGGGAAGAGA-TGCCACT
* * *
2127932 GAGTCATGGACTTTGAAGAAAAAATGCCACTGAGCCGTGGACTTTG
1 GAGTCATGGACTTTG-A-AAAAGATGCCACTGAGTCATGGACTTTG
2127978 GGAAGAGAGG
Statistics
Matches: 726, Mismatches: 133, Indels: 75
0.78 0.14 0.08
Matches are distributed among these distances:
90 13 0.02
91 41 0.06
92 119 0.16
93 40 0.06
94 111 0.15
95 191 0.26
96 65 0.09
97 138 0.19
98 8 0.01
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.24
Consensus pattern (91 bp):
GAGTCATGGACTTTGAAAAAGATGCCACTGAGTCATGGACTTTGAAAAAAAAGATGCCACTGAGT
CGTGGACTTTGGGAAGAGATGCCACT
Found at i:2127789 original size:379 final size:378
Alignment explanation
Indices: 2126972--2127983 Score: 1423
Period size: 379 Copynumber: 2.7 Consensus size: 378
2126962 GACTTCGAAA
* * * * * **
2126972 AGAAAAAAGGTGCCA-TAGAGTCGTGGACTTTG-CGAAGAGA-TGCCACCGAGTCATGGACTTTG
1 AGAAAAGAGATGCCACTA-AGTTGTGGACTTTGTAGAAAAGATTGCCACTAAGTCATGGACTTTG
* * * *
2127034 --G-GAAAAGATTGCCACTGAGTCGTGGACTTTGAAGAAAAGA-TTGCCACTGAGTCGTGGACTT
65 AAGAAAAAAGA-TGCCACTGAGTCGTGGACTTTG-AGAAAAGAGATGCCACTGAGTCATGGGCTT
* * ** ** * * * *
2127095 TGAAGAAAAGATGCCACTGAGTCACAGACTTTGAAAATAAAAAGGTTCCACAGAGTCGTGGACTT
128 TG-GGACAAGATGCCACTGAGTCATGGACTTTG-GGA-AGAAA--TGCCACTGAGTCATGGACTT
* * * * *
2127160 TGGGAAGAGATTGCCACTGAGTCATGGACTTCGAA-AAGAGATGCCACTGAGTTGTAGACTTT--
188 TGGGAAGAGATTGCCACTGAGTCATGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGG
* * *
2127222 GAAGAAAAGATGCCACAGAGTTGTGGACTTAAAAGGAACACGGTGCCATGGAGTTGTGGACTTTG
253 GAAGAAAAGATGCCACAGAGTTGTAGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTG
* * * * *
2127287 AGAAGAGATTGCCATTGAGTCGTGGACTTTGAAGAAAAGGATGCCATTAAGTCATGGACTT
318 AAAAAAGATTGCCACTGAGTCGTGGACTTTGAAGAAAAAGATGCCACTAAGTCATGGACTT
* *
2127348 AGAAAAGAGATGCCACTGAGTTGTGGACTTTGTAGAAAAGATTGCCACTGAGTCATGGACTTTGA
1 AGAAAAGAGATGCCACTAAGTTGTGGACTTTGTAGAAAAGATTGCCACTAAGTCATGGACTTTGA
*
2127413 AGAAAAAAGATGCCACTGAGTCGTGGAGTTTGAGAAAAGAGATGCCACTGAGTCATGGGCTTTGG
66 AGAAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAAAGAGATGCCACTGAGTCATGGGCTTTGG
* *
2127478 GACAAGATGCCATTGAGTCATGGACTTTGGGAAGATATGCCACTGAGTCATGGACTTTGGGAAGA
131 GACAAGATGCCACTGAGTCATGGACTTTGGGAAGAAATGCCACTGAGTCATGGACTTTGGGAAGA
* * *
2127543 CATTGCCACTAAGTCATGGACTTTGAAGAAAATATGCCACTGAGTCGTGGACTTTGGGAAGAAAA
196 GATTGCCACTGAGTCATGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGGGAAGAAAA
*
2127608 GATGCCACGGAGTTGTAGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTGAAAAAAGA
261 GATGCCACAGAGTTGTAGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTGAAAAAAGA
* *
2127673 TTGCCACTGAGTCGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCGTGGACTT
326 TTGCCACTGAGTCGTGGACTTTGAAG-AAAAAGATGCCACTAAGTCATGGACTT
*
2127727 AGAAAAGAGATGCCACTAAGTTGTGGACTTTGTAGAAAAGATTGCCCCTAAGTCATGGACTTTGA
1 AGAAAAGAGATGCCACTAAGTTGTGGACTTTGTAGAAAAGATTGCCACTAAGTCATGGACTTTGA
*
2127792 AGAAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAAAGAGATGCCACTGAGTCATGGGCTTTAG
66 AGAAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAAAGAGATGCCACTGAGTCATGGGCTTTGG
* *
2127857 GACAAGATGCCACTGAGTCATGGACTTTGGGAAGAGATGCCACTGAGTCATGGAATTTGGGAAGA
131 GACAAGATGCCACTGAGTCATGGACTTTGGGAAGAAATGCCACTGAGTCATGGACTTTGGGAAGA
*
2127922 GATTGCCACTGAGTCATGGACTTTGAAGAAAAAATGCCACTGAGCCGTGGACTTTGGGAAGA
196 GATTGCCACTGAGTCATGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGGGAAGA
2127984 GAGGCCATTG
Statistics
Matches: 571, Mismatches: 54, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
375 49 0.09
376 49 0.09
377 10 0.02
378 114 0.20
379 301 0.53
380 42 0.07
381 6 0.01
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (378 bp):
AGAAAAGAGATGCCACTAAGTTGTGGACTTTGTAGAAAAGATTGCCACTAAGTCATGGACTTTGA
AGAAAAAAGATGCCACTGAGTCGTGGACTTTGAGAAAAGAGATGCCACTGAGTCATGGGCTTTGG
GACAAGATGCCACTGAGTCATGGACTTTGGGAAGAAATGCCACTGAGTCATGGACTTTGGGAAGA
GATTGCCACTGAGTCATGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGGGAAGAAAA
GATGCCACAGAGTTGTAGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTTGAAAAAAGA
TTGCCACTGAGTCGTGGACTTTGAAGAAAAAGATGCCACTAAGTCATGGACTT
Found at i:2129331 original size:11 final size:10
Alignment explanation
Indices: 2129314--2129351 Score: 58
Period size: 11 Copynumber: 3.6 Consensus size: 10
2129304 CTTTGCACTC
2129314 TTTTTTTGTT
1 TTTTTTTGTT
2129324 TGTTTTTTGTT
1 T-TTTTTTGTT
2129335 TTTTTTGTGTT
1 TTTTTT-TGTT
2129346 TTTTTT
1 TTTTTT
2129352 CATCTGTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 6 0.23
11 20 0.77
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:2129338 original size:18 final size:18
Alignment explanation
Indices: 2129314--2129349 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
2129304 CTTTGCACTC
*
2129314 TTTTTTTGTTTGTTTTTTG
1 TTTTTTT-TGTGTTTTTTG
2129333 TTTTTTTTGTGTTTTTT
1 TTTTTTTTGTGTTTTTT
2129350 TTCATCTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (18 bp):
TTTTTTTTGTGTTTTTTG
Found at i:2129339 original size:20 final size:20
Alignment explanation
Indices: 2129314--2129351 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2129304 CTTTGCACTC
2129314 TTTTTTTGT-TTGTTTTTTGT
1 TTTTTTTGTGTT-TTTTTTGT
2129334 TTTTTTTGTGTTTTTTTT
1 TTTTTTTGTGTTTTTTTT
2129352 CATCTGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (20 bp):
TTTTTTTGTGTTTTTTTTGT
Found at i:2129374 original size:13 final size:14
Alignment explanation
Indices: 2129344--2129376 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
2129334 TTTTTTTGTG
*
2129344 TTTTTTTTCATCTG
1 TTTTTTTTCATCTA
2129358 TTTTTTTTCAT-TA
1 TTTTTTTTCATCTA
2129371 TTTTTT
1 TTTTTT
2129377 AAGGGAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.09, C:0.09, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTTTTTTCATCTA
Found at i:2129376 original size:14 final size:14
Alignment explanation
Indices: 2129342--2129368 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
2129332 GTTTTTTTTG
2129342 TGTTTTTTTTCATC
1 TGTTTTTTTTCATC
2129356 TGTTTTTTTTCAT
1 TGTTTTTTTTCAT
2129369 TATTTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.11, G:0.07, T:0.74
Consensus pattern (14 bp):
TGTTTTTTTTCATC
Found at i:2136480 original size:21 final size:20
Alignment explanation
Indices: 2136454--2136492 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
2136444 GTTGCGACCT
2136454 TGTATCGATACATTCTGGAAA
1 TGTATCGATACATT-TGGAAA
2136475 TGTATCGATACATTTGGA
1 TGTATCGATACATTTGGA
2136493 TAAAAATGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATTTGGAAA
Found at i:2140607 original size:13 final size:13
Alignment explanation
Indices: 2140589--2140743 Score: 67
Period size: 13 Copynumber: 10.1 Consensus size: 13
2140579 ATACATAAGT
*
2140589 AATGTATTGATAC
1 AATGTATCGATAC
2140602 AATGTATCGATAC
1 AATGTATCGATAC
*
2140615 ATAAGTGTTGTATCAATAC
1 --AA----TGTATCGATAC
2140634 AATGTATCGATAC
1 AATGTATCGATAC
2140647 ATAATTGTTGTATCGATAC
1 --AA----TGTATCGATAC
2140666 AATGTATCGATAC
1 AATGTATCGATAC
2140679 ATAAGTGTTGTATCGATAC
1 --AA----TGTATCGATAC
*
2140698 AATGTATCCATAC
1 AATGTATCGATAC
2140711 ATAAGTGTTGTATCGATAC
1 --AA----TGTATCGATAC
2140730 AATGTATCGATAC
1 AATGTATCGATAC
2140743 A
1 A
2140744 TAAGTGTTGT
Statistics
Matches: 113, Mismatches: 5, Indels: 48
0.68 0.03 0.29
Matches are distributed among these distances:
13 55 0.49
15 8 0.07
17 8 0.07
19 42 0.37
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:2140610 original size:32 final size:32
Alignment explanation
Indices: 2140574--2140770 Score: 340
Period size: 32 Copynumber: 6.2 Consensus size: 32
2140564 ACAATAACTA
** *
2140574 TATCGATACATAAGTAATGTATTGATACAATG
1 TATCGATACATAAGTGTTGTATCGATACAATG
*
2140606 TATCGATACATAAGTGTTGTATCAATACAATG
1 TATCGATACATAAGTGTTGTATCGATACAATG
*
2140638 TATCGATACATAATTGTTGTATCGATACAATG
1 TATCGATACATAAGTGTTGTATCGATACAATG
2140670 TATCGATACATAAGTGTTGTATCGATACAATG
1 TATCGATACATAAGTGTTGTATCGATACAATG
*
2140702 TATCCATACATAAGTGTTGTATCGATACAATG
1 TATCGATACATAAGTGTTGTATCGATACAATG
2140734 TATCGATACATAAGTGTTGTATCGATACAATG
1 TATCGATACATAAGTGTTGTATCGATACAATG
2140766 TATCG
1 TATCG
2140771 CTTCAAAGCT
Statistics
Matches: 156, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 156 1.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.35
Consensus pattern (32 bp):
TATCGATACATAAGTGTTGTATCGATACAATG
Found at i:2140851 original size:20 final size:20
Alignment explanation
Indices: 2140826--2140879 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
2140816 TATCGATACA
*
2140826 TTGTATCGAAACATTGATCT
1 TTGTATCGATACATTGATCT
2140846 TTGTATCGATACATTGATCT
1 TTGTATCGATACATTGATCT
2140866 TTGTATCGATACAT
1 TTGTATCGATACAT
2140880 CTGGGAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.43
Consensus pattern (20 bp):
TTGTATCGATACATTGATCT
Found at i:2149570 original size:14 final size:14
Alignment explanation
Indices: 2149547--2149607 Score: 70
Period size: 14 Copynumber: 4.4 Consensus size: 14
2149537 CGTCCTTCTC
* *
2149547 AAAAAGCAAAAAAA
1 AAAAAACAAAAACA
*
2149561 AAAAAACAAACACA
1 AAAAAACAAAAACA
2149575 AAAAAACAAAAACCA
1 AAAAAACAAAAA-CA
*
2149590 AAAAAAC-AATACA
1 AAAAAACAAAAACA
2149603 AAAAA
1 AAAAA
2149608 GGGAAAGGTC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
13 7 0.17
14 25 0.61
15 9 0.22
ACGTcount: A:0.82, C:0.15, G:0.02, T:0.02
Consensus pattern (14 bp):
AAAAAACAAAAACA
Found at i:2149577 original size:15 final size:15
Alignment explanation
Indices: 2149559--2149607 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
2149549 AAAGCAAAAA
2149559 AAAAAAAACAAACAC
1 AAAAAAAACAAACAC
*
2149574 -AAAAAAACAAAAAC
1 AAAAAAAACAAACAC
*
2149588 CAAAAAAACAATACA-
1 AAAAAAAACAA-ACAC
2149603 AAAAA
1 AAAAA
2149608 GGGAAAGGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 13 0.45
15 14 0.48
16 2 0.07
ACGTcount: A:0.82, C:0.16, G:0.00, T:0.02
Consensus pattern (15 bp):
AAAAAAAACAAACAC
Found at i:2149579 original size:28 final size:28
Alignment explanation
Indices: 2149547--2149608 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
2149537 CGTCCTTCTC
2149547 AAAAAGCAAAAA-AAAAAAAACAAACACA
1 AAAAAGCAAAAACAAAAAAAAC-AACACA
* * *
2149575 AAAAAACAAAAACCAAAAAAACAATACA
1 AAAAAGCAAAAACAAAAAAAACAACACA
2149603 AAAAAG
1 AAAAAG
2149609 GGAAAGGTCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 21 0.72
29 8 0.28
ACGTcount: A:0.81, C:0.15, G:0.03, T:0.02
Consensus pattern (28 bp):
AAAAAGCAAAAACAAAAAAAACAACACA
Found at i:2150959 original size:28 final size:28
Alignment explanation
Indices: 2150887--2151278 Score: 374
Period size: 28 Copynumber: 13.7 Consensus size: 28
2150877 CAGTACGGCT
*
2150887 TCTTTACAAAGCCCACAAGTCAGTGGCAA
1 TCTTTTCAAAGCCCACAAGTCAGTGGC-A
* * * * *
2150916 CCCTTTTTAAAACCCATAAGTCAATGGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
*
2150945 TCTTTTCAAAGCCCACAAGTTAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
2150973 TCTTTTCAAAGCCCATAAGTCAATGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
2151001 CCCCTTTTCAAAGCCCACAAGTTAGTGGCA
1 --TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
2151031 CCTTCTCAAAGCCCATAAGTTAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * * *
2151059 CCTTCTCAAAGCCCATAAGTCAGTGGTA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
*
2151087 TCTTTTCAAAGCCCACAAGTCAGTGGTAA
1 TCTTTTCAAAGCCCACAAGTCAGTGG-CA
* *
2151116 CCCTTTTCAAAGCCCATAAGTCAGTGGCA
1 -TCTTTTCAAAGCCCACAAGTCAGTGGCA
* *
2151145 -CTATTTCAAAGCTCACAAGTCAGTGGTA
1 TCT-TTTCAAAGCCCACAAGTCAGTGGCA
* * *
2151173 TCTTTTTAAAGCACACAAGTTAGTGGCA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
* * *
2151201 CCATTTT-AAAGCCCACAATTAAGTGGCA
1 TC-TTTTCAAAGCCCACAAGTCAGTGGCA
* * *
2151229 TCTTTTCAAAACCCACAAGTCAATGACA
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA
*
2151257 TCCTTTCAAAGCCTACACAAGT
1 TCTTTTCAAAGCC--CACAAGT
2151279 TGATGGCAAC
Statistics
Matches: 303, Mismatches: 49, Indels: 20
0.81 0.13 0.05
Matches are distributed among these distances:
27 6 0.02
28 212 0.70
29 9 0.03
30 76 0.25
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (28 bp):
TCTTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:2151040 original size:86 final size:84
Alignment explanation
Indices: 2150887--2151279 Score: 398
Period size: 86 Copynumber: 4.6 Consensus size: 84
2150877 CAGTACGGCT
* * * * * * *
2150887 TCTTTACAAAGCCCACAAGTCAGTGGCAACCCTTTTTAAAACCCATAAGTCAATGGCATCTTTTC
1 TCTTTTCAAAGCCCACAAGTCAGTGGC-A-CCTTTTCAAAGCCCACAAGTTAGTGGCACCTTTTC
2150952 AAAGCCCACAAGTTAGTGGCA
64 AAAGCCCACAAGTTAGTGGCA
* * *
2150973 TCTTTTCAAAGCCCATAAGTCAATGGCACCCCTTTTCAAAGCCCACAAGTTAGTGGCACCTTCTC
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA--CCTTTTCAAAGCCCACAAGTTAGTGGCACCTTTTC
*
2151038 AAAGCCCATAAGTTAGTGGCA
64 AAAGCCCACAAGTTAGTGGCA
* * * * * * *
2151059 CCTTCTCAAAGCCCATAAGTCAGTGGTATCTTTTCAAAGCCCACAAGTCAGTGGTAACCCTTTTC
1 TCTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGG-CA-CCTTTTC
* *
2151124 AAAGCCCATAAGTCAGTGGCA
64 AAAGCCCACAAGTTAGTGGCA
* * * * *
2151145 -CTATTTCAAAGCTCACAAGTCAGTGGTATCTTTTTAAAGCACACAAGTTAGTGGCACCATTTT-
1 TCT-TTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGGCACC-TTTTC
2151208 AAAGCCCACAA-TTAAGTGGCA
64 AAAGCCCACAAGTT-AGTGGCA
* * *
2151229 TCTTTTCAAAACCCACAAGTCAATGACATCC-TTTCAAAGCCTACACAAGTT
1 TCTTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCC--CACAAGTT
2151280 GATGGCAACC
Statistics
Matches: 260, Mismatches: 37, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
83 1 0.00
84 71 0.27
85 12 0.05
86 176 0.68
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (84 bp):
TCTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTTAGTGGCACCTTTTCAA
AGCCCACAAGTTAGTGGCA
Found at i:2151184 original size:114 final size:114
Alignment explanation
Indices: 2150888--2151269 Score: 416
Period size: 114 Copynumber: 3.4 Consensus size: 114
2150878 AGTACGGCTT
* * * *
2150888 CTTTACAAAGCCCACAAGTCAGTGGCAACCCTTTTTAAAACCCATAAGTCAATGGCATCTTTTCA
1 CTTTTCAAAGCCCACAAGTCAGTGGC-A-CCTTTTCAAAGCCCATAAGTCAGTGGCATCTTTTCA
* *
2150953 AAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCATAAGTCAATGGCACCC
64 AAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAATGGCAACC
* * * * *
2151004 CTTTTCAAAGCCCACAAGTTAGTGGCACCTTCTCAAAGCCCATAAGTTAGTGGCACCTTCTCAAA
1 CTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCATAAGTCAGTGGCATCTTTTCAAA
* * * * *
2151069 GCCCATAAGTCAGTGGTATCTTTTCAAAGCCCACAAGTCAGTGGTAACC
66 GCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAATGGCAACC
* * * * *
2151118 CTTTTCAAAGCCCATAAGTCAGTGGCA-CTATTTCAAAGCTCACAAGTCAGTGGTATCTTTTTAA
1 CTTTTCAAAGCCCACAAGTCAGTGGCACCT-TTTCAAAGCCCATAAGTCAGTGGCATCTTTTCAA
* * * *
2151182 AGCACACAAGTTAGTGGCACCATTTT-AAAGCCCACAA-TTAAGTGGC-A-T
65 AGCCCACAAGTTAGTGGCATC-TTTTCAAAGCCCACAAGTCAA-TGGCAACC
* * *
2151230 CTTTTCAAAACCCACAAGTCAATGACATCC-TTTCAAAGCC
1 CTTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCC
2151270 TACACAAGTT
Statistics
Matches: 221, Mismatches: 40, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
112 32 0.14
113 5 0.02
114 155 0.70
115 5 0.02
116 24 0.11
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (114 bp):
CTTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCATAAGTCAGTGGCATCTTTTCAAA
GCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAATGGCAACC
Found at i:2152202 original size:19 final size:20
Alignment explanation
Indices: 2152163--2152214 Score: 97
Period size: 19 Copynumber: 2.6 Consensus size: 20
2152153 TTTCAACAAT
2152163 TTGTATCGATACATAAAGTG
1 TTGTATCGATACATAAAGTG
2152183 TTGTATCGATACAT-AAGTG
1 TTGTATCGATACATAAAGTG
2152202 TTGTATCGATACA
1 TTGTATCGATACA
2152215 ATGTATCGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATAAAGTG
Found at i:2152345 original size:52 final size:52
Alignment explanation
Indices: 2152300--2152428 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
2152290 CACTGATCTT
*
2152300 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAA
* *
2152352 TGTATCGATACATACAGGCAAATTTGCCCAAATGTATCAATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAA
2152404 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
2152429 CCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAAATGTATCGATACACTATGAAA
Found at i:2156663 original size:14 final size:13
Alignment explanation
Indices: 2156644--2156678 Score: 61
Period size: 14 Copynumber: 2.6 Consensus size: 13
2156634 AGGGGGAACA
2156644 AAAAAAAGTTGTCT
1 AAAAAAAGTTGT-T
2156658 AAAAAAAGTTGTT
1 AAAAAAAGTTGTT
2156671 AAAAAAAG
1 AAAAAAAG
2156679 AAAAAAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.60, C:0.03, G:0.14, T:0.23
Consensus pattern (13 bp):
AAAAAAAGTTGTT
Found at i:2160235 original size:20 final size:20
Alignment explanation
Indices: 2160212--2160284 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2160202 ACAATTCAAA
2160212 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2160232 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2160253 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2160273 GTATCGATACAT
1 GTATCGATACAT
2160285 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2160256 original size:21 final size:21
Alignment explanation
Indices: 2160230--2160305 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
2160220 ACATGTTGCA
2160230 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2160251 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2160271 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
2160292 ATGTATCGATACAT
1 ATGTATCGATACAT
2160306 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2160263 original size:41 final size:41
Alignment explanation
Indices: 2160212--2160305 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
2160202 ACAATTCAAA
*
2160212 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2160253 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2160294 GTATCGATACAT
1 GTATCGATACAT
2160306 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2160362 original size:13 final size:13
Alignment explanation
Indices: 2160344--2160369 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2160334 TACAGCAAGT
2160344 ATGTATCGATACA
1 ATGTATCGATACA
2160357 ATGTATCGATACA
1 ATGTATCGATACA
2160370 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2164453 original size:15 final size:15
Alignment explanation
Indices: 2164433--2164463 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2164423 TAAAAATGAC
*
2164433 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
2164448 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
2164463 C
1 C
2164464 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:2166556 original size:20 final size:21
Alignment explanation
Indices: 2166478--2166555 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 21
2166468 ATGTCCAAAA
*
2166478 TGTATCGATACATGTTTTTG-
1 TGTATCGATACATCTTTTTGT
** *
2166498 TGTATCGATACATCTGGAAATTCT
1 TGTATCGATACATCT---TTTTGT
2166522 ATGTATCGATACAT-TTTTTGT
1 -TGTATCGATACATCTTTTTGT
2166543 TGTATCGATACAT
1 TGTATCGATACAT
2166556 TGTATCGATA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
20 27 0.59
21 3 0.07
23 2 0.04
24 1 0.02
25 13 0.28
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.45
Consensus pattern (21 bp):
TGTATCGATACATCTTTTTGT
Found at i:2166560 original size:13 final size:13
Alignment explanation
Indices: 2166542--2166580 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
2166532 ACATTTTTTG
2166542 TTGTATCGATACA
1 TTGTATCGATACA
2166555 TTGTATCGATACA
1 TTGTATCGATACA
*
2166568 CTGTATCGATACA
1 TTGTATCGATACA
2166581 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:2169046 original size:20 final size:20
Alignment explanation
Indices: 2169023--2169095 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2169013 ACAATTCAAA
2169023 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2169043 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2169064 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2169084 GTATCGATACAT
1 GTATCGATACAT
2169096 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2169067 original size:21 final size:21
Alignment explanation
Indices: 2169041--2169116 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
2169031 ACATGTTGCA
2169041 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2169062 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2169082 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
2169103 ATGTATCGATACAT
1 ATGTATCGATACAT
2169117 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2169074 original size:41 final size:41
Alignment explanation
Indices: 2169023--2169116 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
2169013 ACAATTCAAA
*
2169023 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2169064 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2169105 GTATCGATACAT
1 GTATCGATACAT
2169117 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2169173 original size:13 final size:13
Alignment explanation
Indices: 2169155--2169180 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2169145 TACAGCAAGT
2169155 ATGTATCGATACA
1 ATGTATCGATACA
2169168 ATGTATCGATACA
1 ATGTATCGATACA
2169181 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2172447 original size:21 final size:21
Alignment explanation
Indices: 2172423--2172464 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
2172413 GTATCGATAC
2172423 AATGTATCGATACACTTCCTT
1 AATGTATCGATACACTTCCTT
*
2172444 AATGTATCGATACATTTCCTT
1 AATGTATCGATACACTTCCTT
2172465 GGCAGTTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (21 bp):
AATGTATCGATACACTTCCTT
Found at i:2172526 original size:13 final size:13
Alignment explanation
Indices: 2172508--2172534 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2172498 ACAAAACTTA
2172508 TGTATCGATACAT
1 TGTATCGATACAT
2172521 TGTATCGATACAT
1 TGTATCGATACAT
2172534 T
1 T
2172535 TACTGTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2173255 original size:42 final size:41
Alignment explanation
Indices: 2173153--2173261 Score: 105
Period size: 42 Copynumber: 2.6 Consensus size: 41
2173143 AAATAGGTCT
* * *
2173153 TGCTCCTTGAGGACAAAGGAAGAGAGGAAAAGGAAAGTGTCC
1 TGCTCTTTGAGGACAAAAGAA-AAAGGAAAAGGAAAGTGTCC
** *
2173195 TGCT-TCTTGAGGGTAAAAGAAAAAGGAAAA-TAAAGTGCATCC
1 TGCTCT-TTGAGGACAAAAGAAAAAGGAAAAGGAAAGTG--TCC
2173237 TGCTCTTTGAGGACAAAAGAGAAAA
1 TGCTCTTTGAGGACAAAAGA-AAAA
2173262 AAAGGGAAGG
Statistics
Matches: 54, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
40 6 0.11
41 8 0.15
42 35 0.65
43 5 0.09
ACGTcount: A:0.41, C:0.13, G:0.28, T:0.18
Consensus pattern (41 bp):
TGCTCTTTGAGGACAAAAGAAAAAGGAAAAGGAAAGTGTCC
Found at i:2173370 original size:61 final size:58
Alignment explanation
Indices: 2173283--2173566 Score: 292
Period size: 61 Copynumber: 4.8 Consensus size: 58
2173273 AGTGTGTCCC
* * * *
2173283 GCTCTTTGAGGATTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCT
1 GCTCTTTGAGGACTGAAGA-TGCCACCAACTTGTGTGGGCTTTGAAAA-AAAA-GCATCCT
*
2173344 GC-CTTTTGAGGACTGGAAGATGCCACCAACTTATGTGGGCTTTGCAAAAAGAAAGCATCCT
1 GCTC-TTTGAGGACT-GAAGATGCCACCAACTTGTGTGGGCTTTG-AAAAA-AAAGCATCCT
* * * *
2173405 ACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGCGTCCT
1 GCTCTTTGAGGACTGAAGA-TGCCACCAACTTGTGTGGGCTTTGAAAA--A-AAAGCATCCT
* * *
2173466 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTT----AAAAAGCATCCT
1 GCTCTTTGAGGACTGAAGATGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGCATCCT
* *
2173520 GCTATTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
1 GCTCTTTGAGGACTG-AAGATGCCACCAACTTGTGTGGGCTTTGAAA
2173567 GGTGTCTTGC
Statistics
Matches: 190, Mismatches: 20, Indels: 28
0.80 0.08 0.12
Matches are distributed among these distances:
54 22 0.12
55 26 0.14
57 1 0.01
59 4 0.02
60 26 0.14
61 99 0.52
62 12 0.06
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (58 bp):
GCTCTTTGAGGACTGAAGATGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGCATCCT
Found at i:2173557 original size:115 final size:118
Alignment explanation
Indices: 2173287--2173568 Score: 394
Period size: 122 Copynumber: 2.4 Consensus size: 118
2173277 TGTCCCGCTC
* *
2173287 TTTGAGGATTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCGTCCTGCCTTTT
1 TTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCCTTTT
*
2173351 GAGGACTGGAAGATGCCACCAACTTATGTGGGCTTTGCAAAAAGAAAGCATCCTACTC
65 GAGGACTGGAAGATGCCACCAACTTATGTGGGCTTT----AAAGAAAGCATCCTACTA
*
2173409 TTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTG-CTCTTT
1 TTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCCT-TTT
* * *
2173473 GAGGACT-GAAGGTGCCACCAGCTTATGTGGGCTTT-AA-AAAGCATCCTGCTA
65 GAGGACTGGAAGATGCCACCAACTTATGTGGGCTTTAAAGAAAGCATCCTACTA
* *
2173524 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 TTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
2173569 TGTCTTGCTC
Statistics
Matches: 149, Mismatches: 9, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
115 55 0.37
116 2 0.01
121 32 0.21
122 60 0.40
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (118 bp):
TTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCCTTTTG
AGGACTGGAAGATGCCACCAACTTATGTGGGCTTTAAAGAAAGCATCCTACTA
Found at i:2173689 original size:270 final size:270
Alignment explanation
Indices: 2173337--2173966 Score: 1045
Period size: 270 Copynumber: 2.3 Consensus size: 270
2173327 AAAAGAAAAG
*
2173337 GCGTCCTGC-CTTTTGAGGACT-GGAAGATGCCACCAACTTATGTGGGCTTTGCAAAAAGAAAGC
1 GCGTCCTGCTC-TTTGAGGACTAGGAAG-TGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGC
*
2173400 ATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
64 ATCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
2173465 TGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAAGCATCCTGCTATTTGAG
129 TGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAAGCATCCTGCTATTTGAG
* * *
2173530 GACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCTTGCTCTTTGAGGACTAAAGGG
194 GACTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGG
2173595 TGAAAGGAGAGA
259 TGAAAGGAGAGA
2173607 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCAT
1 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCAT
* *
2173672 CCTGCTTTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTGTCCTG
66 CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTG
* * *
2173737 TTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGA
131 CTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAAGCATCCTGCTATTTGAGGA
*
2173802 CTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGTTCTTTGAGGACTAAAGGGTG
196 CTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTG
2173867 AAAGGAGAGA
261 AAAGGAGAGA
* * * *
2173877 ACGTCCTGCTCTTTGAGGAC-ATGAAGGTGCCACCAACTTGTGTGAGCTTT--AAAAGGAAAAGG
1 GCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTGCAAAAAG-AAA-G
2173939 CATCCTGCTCTTTGAGGACTGAAAAGTG
63 CATCCTGCTCTTTGAGGACTGAAAAGTG
2173967 GAAGGAGAAG
Statistics
Matches: 339, Mismatches: 16, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
268 5 0.01
269 7 0.02
270 321 0.95
271 6 0.02
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (270 bp):
GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCAT
CCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTG
CTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAAGCATCCTGCTATTTGAGGA
CTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAGGGTG
AAAGGAGAGA
Found at i:2173698 original size:155 final size:148
Alignment explanation
Indices: 2173449--2173723 Score: 410
Period size: 155 Copynumber: 1.8 Consensus size: 148
2173439 GTGGGCTTTA
*
2173449 AAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAGCTTATGTGGGCTTTAAAAAG
1 AAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAAG
* *
2173514 CATCCTGCTATTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCTTGCTC
66 CATCCTGCTATTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCTTGCTC
2173579 TTTGAGGACTAAAGGGTG
131 TTTGAGGACTAAAGGGTG
*
2173597 AAAGGAG-AGAGCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTGCA
1 AAAGGAGAAG-GCGTCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTATGTGGGCTTT---
*
2173660 AAAAGAAAGCATCCTGCTTTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
60 --AA-AAAGCATCCTGCTATTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
2173724 AGAAGGTGTC
Statistics
Matches: 113, Mismatches: 5, Indels: 11
0.88 0.04 0.09
Matches are distributed among these distances:
147 2 0.02
148 28 0.25
149 22 0.19
150 3 0.03
154 2 0.02
155 56 0.50
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (148 bp):
AAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAAG
CATCCTGCTATTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCTTGCTC
TTTGAGGACTAAAGGGTG
Found at i:2173705 original size:61 final size:58
Alignment explanation
Indices: 2173610--2173858 Score: 262
Period size: 61 Copynumber: 4.3 Consensus size: 58
2173600 GGAGAGAGCG
*
2173610 TCCTGCTCTTTGAGGACT-AGGAAGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCA
1 TCCTGCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT--AAAAAG-AAGCA
* **
2173671 TCCTGCTTTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA--AGAA-GCA
* * * *
2173732 TCCTGTTCTTTGAGGACTG-AAGGTGCCACCAGCTTATGTGGGCTTT-AAAAG--GCA
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAGCA
* * * *
2173786 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTT-GAAAG--GCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAGCA
*
2173841 TCCTGTTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
2173859 AAAGGGTGAA
Statistics
Matches: 165, Mismatches: 18, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
54 19 0.12
55 47 0.28
57 2 0.01
59 7 0.04
60 26 0.16
61 63 0.38
62 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (58 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAGCA
Found at i:2173813 original size:115 final size:117
Alignment explanation
Indices: 2173609--2173838 Score: 322
Period size: 115 Copynumber: 1.9 Consensus size: 117
2173599 AGGAGAGAGC
*
2173609 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCC
1 GTCCTGCTCTTTGAGGACTA-GAAGTGCCACCAACTTATGTGGGCTTT--AAAAAG--AGCATCC
* *
2173674 TGCTTTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGT
61 TGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAGGT
* *
2173731 GTCCTGTTCTTTGAGGACT-GAAGGTGCCACCAGCTTATGTGGGCTTT-AAAAG-GCATCCTGCT
1 GTCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTATGTGGGCTTTAAAAAGAGCATCCTGCT
* *
2173793 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGG
65 CTTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGG
2173839 CGTCCTGTTC
Statistics
Matches: 100, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
115 52 0.52
118 5 0.05
120 3 0.03
121 22 0.22
122 18 0.18
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (117 bp):
GTCCTGCTCTTTGAGGACTAGAAGTGCCACCAACTTATGTGGGCTTTAAAAAGAGCATCCTGCTC
TTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAGGT
Found at i:2173838 original size:55 final size:55
Alignment explanation
Indices: 2173664--2173863 Score: 226
Period size: 55 Copynumber: 3.6 Consensus size: 55
2173654 TTTGCAAAAA
* *
2173664 GAAA-GCATCCTGCTTTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
** * * *
2173718 AAAAGGAGAAGGTGTCCTGTTCTTTGAGGACTG-AAGGTGCCACCAGCTTATGTGGGCTTT
1 -----GA-AAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
2173778 AAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
2173833 GAAAGGCGTCCTGTTCTTTGAGGACT-AAAGG
1 GAAAGGCATCCTGCTCTTTGAGGACTGAAAGG
2173864 GTGAAAGGAG
Statistics
Matches: 121, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
54 27 0.22
55 48 0.40
59 2 0.02
60 26 0.21
61 18 0.15
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.28
Consensus pattern (55 bp):
GAAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:2174939 original size:1 final size:1
Alignment explanation
Indices: 2174933--2175026 Score: 71
Period size: 1 Copynumber: 94.0 Consensus size: 1
2174923 GCAGTTCTTC
* * * * * * * * *
2174933 TTTTTTTTTCTTTTTTTTCTTTGTTTTGTTTTTTGTCTTTTTTTTTGTTGTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
2174998 GTTTTTTTTGTTGTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2175027 GAAAAAGAAT
Statistics
Matches: 67, Mismatches: 26, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 67 1.00
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (1 bp):
T
Found at i:2174948 original size:8 final size:8
Alignment explanation
Indices: 2174944--2175024 Score: 85
Period size: 8 Copynumber: 9.9 Consensus size: 8
2174934 TTTTTTTTCT
*
2174944 TTTTTTTC
1 TTTTTTTG
2174952 TTTGTTTTG
1 TTT-TTTTG
2174961 -TTTTTTG
1 TTTTTTTG
*
2174968 TCTTTTT-
1 TTTTTTTG
*
2174975 TTTTGTTG
1 TTTTTTTG
2174983 TTTTTTTG
1 TTTTTTTG
2174991 TTTTTTTG
1 TTTTTTTG
2174999 TTTTTTTTG
1 -TTTTTTTG
2175008 TTGTTTTTTG
1 -T-TTTTTTG
2175018 TTTTTTT
1 TTTTTTT
2175025 TTGAAAAAGA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
7 10 0.16
8 31 0.49
9 15 0.24
10 7 0.11
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.85
Consensus pattern (8 bp):
TTTTTTTG
Found at i:2174948 original size:9 final size:9
Alignment explanation
Indices: 2174934--2175025 Score: 98
Period size: 9 Copynumber: 9.9 Consensus size: 9
2174924 CAGTTCTTCT
*
2174934 TTTTTTTTC
1 TTTTTTTTG
*
2174943 TTTTTTTTC
1 TTTTTTTTG
*
2174952 TTTGTTTTG
1 TTTTTTTTG
2174961 TTTTTTGTCT-
1 TTTTTT-T-TG
2174971 TTTTTTTTG
1 TTTTTTTTG
2174980 TTGTTTTTT-
1 TT-TTTTTTG
2174989 TGTTTTTTTG
1 T-TTTTTTTG
2174999 TTTTTTTTG
1 TTTTTTTTG
2175008 TTGTTTTTTG
1 TT-TTTTTTG
2175018 TTTTTTTT
1 TTTTTTTT
2175026 TGAAAAAGAA
Statistics
Matches: 73, Mismatches: 3, Indels: 14
0.81 0.03 0.16
Matches are distributed among these distances:
8 1 0.01
9 47 0.64
10 24 0.33
11 1 0.01
ACGTcount: A:0.00, C:0.03, G:0.11, T:0.86
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:2174954 original size:19 final size:19
Alignment explanation
Indices: 2174930--2175025 Score: 115
Period size: 19 Copynumber: 5.1 Consensus size: 19
2174920 TAAGCAGTTC
*
2174930 TTCTTTTTTTTTCTTTTTT
1 TTCTTTTTTTTTGTTTTTT
*
2174949 TTC-TTTGTTTTGTTTTTT
1 TTCTTTTTTTTTGTTTTTT
*
2174967 GTCTTTTTTTTTGTTGTTTT
1 TTCTTTTTTTTTGTT-TTTT
*
2174987 TT-TGTTTTTTTGTTTTTT
1 TTCTTTTTTTTTGTTTTTT
* *
2175005 TTGTTGTTTTTTGTTTTTT
1 TTCTTTTTTTTTGTTTTTT
2175024 TT
1 TT
2175026 TGAAAAAGAA
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
18 21 0.32
19 40 0.61
20 5 0.08
ACGTcount: A:0.00, C:0.04, G:0.10, T:0.85
Consensus pattern (19 bp):
TTCTTTTTTTTTGTTTTTT
Found at i:2187493 original size:50 final size:51
Alignment explanation
Indices: 2187396--2187512 Score: 159
Period size: 50 Copynumber: 2.3 Consensus size: 51
2187386 GAAAATAACG
* *
2187396 GGGTTGGAGTATCCCCAATTGTGAGAAATTGGTGTTTTGAAAATAAAATC-
1 GGGTTGGAGTATCCCCAATTGTGAAAAATTGGTATTTTGAAAATAAAATCA
* *
2187446 GGAGTTGGAGTATCTCCGATTGT-AAAAATTGGTATTTT-AGAAATAAAATCA
1 GG-GTTGGAGTATCCCCAATTGTGAAAAATTGGTATTTTGA-AAATAAAATCA
2187497 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
2187513 TCGAAAATAA
Statistics
Matches: 59, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
49 1 0.02
50 38 0.64
51 20 0.34
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32
Consensus pattern (51 bp):
GGGTTGGAGTATCCCCAATTGTGAAAAATTGGTATTTTGAAAATAAAATCA
Found at i:2187548 original size:28 final size:30
Alignment explanation
Indices: 2187495--2187571 Score: 101
Period size: 28 Copynumber: 2.7 Consensus size: 30
2187485 GAAATAAAAT
2187495 CAGGGTTGGAGTATCCCC--TCGAAAATAA
1 CAGGGTTGGAGTATCCCCGATCGAAAATAA
2187523 C-GGGATTGGAGTATCCCCGAT-G-AAATAA
1 CAGGG-TTGGAGTATCCCCGATCGAAAATAA
*
2187551 CAGGGTTGGAGTACCCCCGAT
1 CAGGGTTGGAGTATCCCCGAT
2187572 TATGAAAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
27 3 0.07
28 36 0.82
29 4 0.09
30 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.21
Consensus pattern (30 bp):
CAGGGTTGGAGTATCCCCGATCGAAAATAA
Found at i:2187706 original size:76 final size:76
Alignment explanation
Indices: 2187613--2187773 Score: 259
Period size: 76 Copynumber: 2.1 Consensus size: 76
2187603 CCAGGGTTGG
* *
2187613 AGTATCCCCTCGGAAATAATAGGGCTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAA
1 AGTATCCCCTCGAAAATAACAGGGCTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAA
2187678 ACTGGGGTTAA
66 ACTGGGGTTAA
* * *
2187689 AGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGATATAAA
1 AGTATCCCCTCGAAAATAACAGGGCTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAA
**
2187754 ACTGGGGTTGG
66 ACTGGGGTTAA
2187765 AGTATCCCC
1 AGTATCCCC
2187774 GAGATGAAAA
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 78 1.00
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (76 bp):
AGTATCCCCTCGAAAATAACAGGGCTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAA
ACTGGGGTTAA
Found at i:2190163 original size:13 final size:13
Alignment explanation
Indices: 2190145--2190170 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2190135 ACAAAGATCG
2190145 ATGTATCGATACA
1 ATGTATCGATACA
2190158 ATGTATCGATACA
1 ATGTATCGATACA
2190171 CTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2190181 original size:21 final size:21
Alignment explanation
Indices: 2190157--2190198 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
2190147 GTATCGATAC
2190157 AATGTATCGATACACTTCCTT
1 AATGTATCGATACACTTCCTT
*
2190178 AATGTATCGATACATTTCCTT
1 AATGTATCGATACACTTCCTT
2190199 GGCAGTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.40
Consensus pattern (21 bp):
AATGTATCGATACACTTCCTT
Found at i:2190249 original size:19 final size:19
Alignment explanation
Indices: 2190225--2190295 Score: 88
Period size: 19 Copynumber: 3.6 Consensus size: 19
2190215 CTATACATTA
2190225 TATCGATACAAAACTTATG
1 TATCGATACAAAACTTATG
*
2190244 TATCGATACAACACTTATG
1 TATCGATACAAAACTTATG
** *
2190263 TATCGATACATTTACTGTTTG
1 TATCGATACA-AAACT-TATG
2190284 TATCGATACAAA
1 TATCGATACAAA
2190296 TTGTTTGAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
19 28 0.64
20 3 0.07
21 13 0.30
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (19 bp):
TATCGATACAAAACTTATG
Found at i:2191156 original size:156 final size:156
Alignment explanation
Indices: 2190686--2191576 Score: 879
Period size: 156 Copynumber: 5.7 Consensus size: 156
2190676 AATTTTTCGG
* * * * *
2190686 TAACCCTAAATGACTTAAAAAGGA-TATAGAGATATGGTGAATCTATCCTAAATACCCACCTTCG
1 TAACCCTAAAGGACTTAAAAAGGACTATA-AAATAGGGTGAACCTATCCTAAATACCCACCTTCA
* * * * * *
2190750 GCATGAAAGCAGACCCGGTGACAACCTAAGACTCGGTTATAAAAAATTACAAAAATAACCCTAGG
65 GCAAGAAAACAGACCCGGTGACAACCTAGGACTCGATTCTAAAAAATTACAAAAAT-ACCCTAAG
*
2190815 GGTATACCTTCGACGTGAAAGTATCCCGG
129 GG-ATACCTTCGACGTGAAAGTATCCCGA
* * *
2190844 TAACCCTAAAAGACTTAAAAAGGA-TATAGAGATAGGGTGAACCTATCCTAAATACCCATCTTCA
1 TAACCCTAAAGGACTTAAAAAGGACTATA-AAATAGGGTGAACCTATCCTAAATACCCACCTTCA
* * * * * * * * *
2190908 GCATGAAAGCAGACTCGATGACAAGCTAGGACTCGATTGTAAAAAATTACGAAAATACCTGTAAA
65 GCAAGAAAACAGACCCGGTGACAACCTAGGACTCGATTCTAAAAAATTACAAAAATACC-CTAAG
*
2190973 AGATACCTTCGACGTGAAAGTATCCCGA
129 GGATACCTTCGACGTGAAAGTATCCCGA
* * *
2191001 TAACCCTAAAGGACTTAAAAAGGA-TATAAAGATGGGGTAAACCTATCCTAGATACCCACCTTCA
1 TAACCCTAAAGGACTTAAAAAGGACTATAAA-ATAGGGTGAACCTATCCTAAATACCCACCTTCA
* * *
2191065 GCAAGAAAAC-GACTCGGTGATAACCTAGGACTCAATTCTAAAAAATTACAAAAATACCTCTAAG
65 GCAAGAAAACAGACCCGGTGACAACCTAGGACTCGATTCTAAAAAATTACAAAAATACC-CTAAG
2191129 GGATACCTTCGACGTGAAAGTATCCCGA
129 GGATACCTTCGACGTGAAAGTATCCCGA
* * * * **
2191157 TACCCCTAAAGGACTTAAAAAAGACTATAAAA-AGGGTGAACCTATCCTAAATGCCCACTTTTGG
1 TAACCCTAAAGGACTTAAAAAGGACTATAAAATAGGGTGAACCTATCCTAAATACCCACCTTCAG
* * * * * * * * *
2191221 CATGAAAACTA-ACCCAGCGACAACCTAGGAATCGATTTTATAAAATTACGAAAATGCCCTTAGG
66 CAAGAAAAC-AGACCCGGTGACAACCTAGGACTCGATTCTAAAAAATTACAAAAATACCCTAAGG
* *
2191285 GAATACCTTTGACGTGAAAATATCCCGA
130 G-ATACCTTCGACGTGAAAGTATCCCGA
* ** * *
2191313 T-ACCTCCAAAGGACTTAAAAAAAACTAT-AAATGGGGTGAACCTATCCTAAATACCCACCTTCG
1 TAACC-CTAAAGGACTTAAAAAGGACTATAAAATAGGGTGAACCTATCCTAAATACCCACCTTCA
*** ** * * * * * *
2191376 GCATA-AAAGTGGACCTAGTGATAACCTAGGACTCGGTTTTAGAAAATTATAAAAATGCCCTCAA
65 GCA-AGAAAACAGACCCGGTGACAACCTAGGACTCGATTCTAAAAAATTACAAAAATACCCT-AA
* *
2191440 AGGATACCTTCAACGTGAAAGTATCCCGA
128 GGGATACCTTCGACGTGAAAGTATCCCGA
* * * * *
2191469 T-ACCCTTAAAAGACTTCAAAAATGACTATAAAAGA-GCTGAACCTATCCTAAATACTCACCTTC
1 TAACCC-TAAAGGACTT-AAAAAGGACTATAAAATAGGGTGAACCTATCCTAAATACCCACCTTC
* * *
2191532 AGCATA-AAAAGCTGGACCCGGAGATAACCTAGGACTCGATTCTAA
64 AGCA-AGAAAA-C-AGACCCGGTGACAACCTAGGACTCGATTCTAA
2191577 CAGATTATGA
Statistics
Matches: 619, Mismatches: 98, Indels: 31
0.83 0.13 0.04
Matches are distributed among these distances:
155 45 0.07
156 289 0.47
157 145 0.23
158 114 0.18
159 26 0.04
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (156 bp):
TAACCCTAAAGGACTTAAAAAGGACTATAAAATAGGGTGAACCTATCCTAAATACCCACCTTCAG
CAAGAAAACAGACCCGGTGACAACCTAGGACTCGATTCTAAAAAATTACAAAAATACCCTAAGGG
ATACCTTCGACGTGAAAGTATCCCGA
Found at i:2191311 original size:312 final size:310
Alignment explanation
Indices: 2190643--2191608 Score: 1011
Period size: 312 Copynumber: 3.1 Consensus size: 310
2190633 AGAAAAGTCT
* * * ** * *
2190643 AAAATGCCCTTAAGGATATATCTTCGACGTGAAAATTTTTCGGTAACCCTAAATGACTTAAAAAG
1 AAAATGCCCTT-AGGAGATACCTTCGACGTGAAAATATCCCGATAACCCTAAAGGACTTAAAAAG
* ** * * * *
2190708 GATATAGAGATATGGTGAATCTATCCTAAATACCCACCTTCGGCATGAAAGCAGACCCGGTGACA
65 GATATAAAGATGGGGTGAACCTATCCTAAATACCCACCTTCGGCAAGAAAAC-GA-CCGGTGATA
* *
2190773 ACCTAAGACTCGGTTATAAAAAATTACAAAAATAACCCTAGGGGTATACCTTCGACGTGAAAGTA
128 ACCTAGGACTCGGTTATAAAAAATTACAAAAAT-ACCCTAAGGG-ATACCTTCGACGTGAAAGTA
* * * *
2190838 TCCCGGTAACCCTAAAAGACTTAAAAAGGA-TATAGAGATAGGGTGAACCTATCCTAAATACCCA
191 TCCCGATACCCCTAAAAGACTTAAAAAAGACTATA-A-AAAGGGTGAACCTATCCTAAATACCCA
* * * * *
2190902 TCTTCAGCATGAAAGCAGACTCGATGACAAGCTAGGACTCGATTGTAAAAAATTACG
254 TCTTCAGCATGAAAACAGACCCGACGACAACCTAGGAATCGATTGTAAAAAATTACG
* ** *
2190959 AAAAT-ACCTGTAAAAGATACCTTCGACGTGAAAGTATCCCGATAACCCTAAAGGACTTAAAAAG
1 AAAATGCCCT-TAGGAGATACCTTCGACGTGAAAATATCCCGATAACCCTAAAGGACTTAAAAAG
* * *
2191023 GATATAAAGATGGGGTAAACCTATCCTAGATACCCACCTTCAGCAAGAAAACGACTCGGTGATAA
65 GATATAAAGATGGGGTGAACCTATCCTAAATACCCACCTTCGGCAAGAAAACGAC-CGGTGATAA
** *
2191088 CCTAGGACTCAATTCTAAAAAATTACAAAAATACCTCTAAGGGATACCTTCGACGTGAAAGTATC
129 CCTAGGACTCGGTTATAAAAAATTACAAAAATACC-CTAAGGGATACCTTCGACGTGAAAGTATC
* *
2191153 CCGATACCCCTAAAGGACTTAAAAAAGACTATAAAAAGGGTGAACCTATCCTAAATGCCCA-CTT
193 CCGATACCCCTAAAAGACTTAAAAAAGACTATAAAAAGGGTGAACCTATCCTAAATACCCATC-T
** * *
2191217 TTGGCATGAAAACTA-ACCC-AGCGACAACCTAGGAATCGATTTTATAAAATTACG
257 TCAGCATGAAAAC-AGACCCGA-CGACAACCTAGGAATCGATTGTAAAAAATTACG
* *
2191271 AAAATGCCCTTAGG-GAATACCTTTGACGTGAAAATATCCCGAT-ACCTCCAAAGGACTTAAAAA
1 AAAATGCCCTTAGGAG-ATACCTTCGACGTGAAAATATCCCGATAACC-CTAAAGGACTTAAAAA
** ** *
2191334 AAACTAT-AA-ATGGGGTGAACCTATCCTAAATACCCACCTTCGGCATA-AAAGTGGACCTAGTG
64 GGA-TATAAAGATGGGGTGAACCTATCCTAAATACCCACCTTCGGCA-AGAAA-ACGACC-GGTG
* * * * * *
2191396 ATAACCTAGGACTCGGTTTTAGAAAATTATAAAAATGCCCTCAAAGGATACCTTCAACGTGAAAG
125 ATAACCTAGGACTCGGTTATAAAAAATTACAAAAATACCCT-AAGGGATACCTTCGACGTGAAAG
* * * *
2191461 TATCCCGATACCCTTAAAAGACTTCAAAAATGACTAT-AAAAGAGCTGAACCTATCCTAAATACT
189 TATCCCGATACCCCTAAAAGACTT-AAAAAAGACTATAAAAAG-GGTGAACCTATCCTAAATACC
* * * * * * * * *
2191525 CACCTTCAGCATAAAAAGCTGGACCCGGA-GATAACCTAGGACTCGATTCTAACAGATTATG
252 CATCTTCAGCATGAAAA-C-AGACCC-GACGACAACCTAGGAATCGATTGTAAAAAATTACG
*
2191586 AAAATGCCCTTAGTAGATACCTT
1 AAAATGCCCTTAGGAGATACCTT
2191609 TAATATAAAA
Statistics
Matches: 546, Mismatches: 81, Indels: 47
0.81 0.12 0.07
Matches are distributed among these distances:
311 45 0.08
312 205 0.38
313 99 0.18
314 51 0.09
315 138 0.25
316 7 0.01
317 1 0.00
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (310 bp):
AAAATGCCCTTAGGAGATACCTTCGACGTGAAAATATCCCGATAACCCTAAAGGACTTAAAAAGG
ATATAAAGATGGGGTGAACCTATCCTAAATACCCACCTTCGGCAAGAAAACGACCGGTGATAACC
TAGGACTCGGTTATAAAAAATTACAAAAATACCCTAAGGGATACCTTCGACGTGAAAGTATCCCG
ATACCCCTAAAAGACTTAAAAAAGACTATAAAAAGGGTGAACCTATCCTAAATACCCATCTTCAG
CATGAAAACAGACCCGACGACAACCTAGGAATCGATTGTAAAAAATTACG
Found at i:2193278 original size:14 final size:13
Alignment explanation
Indices: 2193241--2193291 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
2193231 AATTATACCG
*
2193241 TAAAAATT-AATA
1 TAAAAATTAAATT
*
2193253 AAAAATATTAAATT
1 TAAAA-ATTAAATT
2193267 GTAAAAATTAAAATT
1 -TAAAAATT-AAATT
2193282 TAAAAATTAA
1 TAAAAATTAA
2193292 GATAAAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
12 4 0.12
13 5 0.16
14 14 0.44
15 9 0.28
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (13 bp):
TAAAAATTAAATT
Found at i:2193740 original size:167 final size:168
Alignment explanation
Indices: 2193491--2194015 Score: 495
Period size: 167 Copynumber: 3.2 Consensus size: 168
2193481 GAGTTTAATA
* ** * * *
2193491 ACAATATTAGATGAATTTTAAAAATTTTAAA-TTA-AAAAATCT-CTCTGAAAATATTTATGATG
1 ACAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCTCCT-TGAAAACATTTATGAAG
** * *
2193553 TAGAAAACTAGGTTTTTCAAAAA-AAGAGACATTTCAAAGAAAAAAATCCAAAACT-TATGGAAA
65 TAGAAAACTCCGTTTTTCAAAAACAAGAGA-ATTTCAAAGAAAAAAATCCAAAAATATATGAAAA
* * *
2193616 TGAA-TTAATTTTT-TAAAATTGATTTACTATGAATCAAATG
129 T-AAGTAAATTTTTGT-AAACTGATTTAATATGAATCAAATG
* *
2193656 ACAATATTTGATGAGTTTTAAAAATAAAAAACTAAGAAAAATCTCCTTGAAAACATTTATGAAGT
1 ACAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCTCCTTGAAAACATTTATGAAGT
* * * **
2193721 AGAAAACTCTGTATTTCAAAAACAAGAGAATTTC-AAGGAAAAAATTGAAAAATATATGAAAATA
66 AGAAAACTCCGTTTTTCAAAAACAAGAGAATTTCAAAGAAAAAAATCCAAAAATATATGAAAATA
*
2193785 AGTAAATTTTTGTAAACTGATTTAATGTGAATCAAATG
131 AGTAAATTTTTGTAAACTGATTTAATATGAATCAAATG
* * * * * * *
2193823 ATAATATTTGATGAAATTTAAAAATTAAAAACCAAGAAAAAT-TCCCCTGAGAACATCTA-CAGA
1 ACAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCT-CCTTGAAAACATTTATGA-A
* * * ***
2193886 GTAGAAAACTCCATTTTTCAAAAACAAGAGAATTTC-AAGTAGAAAAAT-AAAAAACCCATGAAA
64 GTAGAAAACTCCGTTTTTCAAAAACAAGAGAATTTCAAAG-AAAAAAATCCAAAAATATATGAAA
* * * * *
2193949 ATGAA--AGAATTTTTGAAAACTAATTTCATAT-AAACTAAATA
128 AT-AAGTA-AATTTTTGTAAACTGATTTAATATGAATC-AAATG
*
2193990 ATAATATTTGATGAATTTTAAAAATT
1 ACAATATTTGATGAATTTTAAAAATT
2194016 TAAACCCATG
Statistics
Matches: 302, Mismatches: 45, Indels: 24
0.81 0.12 0.06
Matches are distributed among these distances:
165 26 0.09
166 25 0.08
167 234 0.77
168 17 0.06
ACGTcount: A:0.50, C:0.09, G:0.11, T:0.31
Consensus pattern (168 bp):
ACAATATTTGATGAATTTTAAAAATTAAAAACTAAGAAAAATCTCCTTGAAAACATTTATGAAGT
AGAAAACTCCGTTTTTCAAAAACAAGAGAATTTCAAAGAAAAAAATCCAAAAATATATGAAAATA
AGTAAATTTTTGTAAACTGATTTAATATGAATCAAATG
Found at i:2195268 original size:16 final size:18
Alignment explanation
Indices: 2195231--2195269 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
2195221 ATTTTTTATT
2195231 ATTATAATATTAAATAAA
1 ATTATAATATTAAATAAA
*
2195249 ATTATTATA-TAAAT-AA
1 ATTATAATATTAAATAAA
2195265 ATTAT
1 ATTAT
2195270 CAGTACAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 5 0.25
18 8 0.40
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTATAATATTAAATAAA
Found at i:2195430 original size:7 final size:7
Alignment explanation
Indices: 2195399--2195429 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
2195389 TTAAATGAAA
2195399 TTACAAG
1 TTACAAG
2195406 TTACAAG
1 TTACAAG
2195413 TTACAAG
1 TTACAAG
*
2195420 TTATAAG
1 TTACAAG
2195427 TTA
1 TTA
2195430 TGATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.35
Consensus pattern (7 bp):
TTACAAG
Found at i:2195585 original size:6 final size:6
Alignment explanation
Indices: 2195574--2195615 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
2195564 ATCCAATTCA
2195574 TATATT TATA-T TATATT TATATT T-T-TT TATATT TATACTT TA
1 TATATT TATATT TATATT TATATT TATATT TATATT TATA-TT TA
2195616 CTTTAAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
4 3 0.09
5 7 0.22
6 18 0.56
7 4 0.12
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (6 bp):
TATATT
Found at i:2195590 original size:11 final size:11
Alignment explanation
Indices: 2195574--2195606 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
2195564 ATCCAATTCA
2195574 TATATTTATAT
1 TATATTTATAT
2195585 TATATTTATAT
1 TATATTTATAT
*
2195596 T-TTTTTATAT
1 TATATTTATAT
2195606 T
1 T
2195607 TATACTTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (11 bp):
TATATTTATAT
Found at i:2199540 original size:22 final size:22
Alignment explanation
Indices: 2199498--2199540 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
2199488 AATAGCCATG
*
2199498 TATAAAATTTTGATGACATTAT
1 TATAAAATTTTGATAACATTAT
* *
2199520 TATAAGATTTTGATAAGATTA
1 TATAAAATTTTGATAACATTA
2199541 ACTGATCAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (22 bp):
TATAAAATTTTGATAACATTAT
Found at i:2201623 original size:13 final size:13
Alignment explanation
Indices: 2201605--2201630 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2201595 CAATTTTTTG
2201605 TGTATCGATACAT
1 TGTATCGATACAT
2201618 TGTATCGATACAT
1 TGTATCGATACAT
2201631 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2201645 original size:32 final size:33
Alignment explanation
Indices: 2201585--2201648 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
2201575 TACAAGCCAA
** *
2201585 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
2201618 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
2201649 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:2201742 original size:20 final size:20
Alignment explanation
Indices: 2201689--2201744 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
2201679 ACATCTTTTT
* *
2201689 CATGTATCGATACATTGCAA
1 CATGTATCGATACTTTGAAA
2201709 CATGTATCGATACTTTGAAA
1 CATGTATCGATACTTTGAAA
**
2201729 TGTGTATCGATACTTT
1 CATGTATCGATACTTT
2201745 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (20 bp):
CATGTATCGATACTTTGAAA
Found at i:2204201 original size:13 final size:13
Alignment explanation
Indices: 2204183--2204208 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2204173 ATAATCACCC
2204183 TGTATCGATACAA
1 TGTATCGATACAA
2204196 TGTATCGATACAA
1 TGTATCGATACAA
2204209 GGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2206291 original size:15 final size:15
Alignment explanation
Indices: 2206271--2206301 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2206261 ATTTCGTTTG
*
2206271 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
2206286 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
2206301 G
1 G
2206302 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:2207834 original size:12 final size:12
Alignment explanation
Indices: 2207804--2207842 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
2207794 ATCCATTTTG
2207804 TTAATTCATTAT
1 TTAATTCATTAT
2207816 TTAAATTCATTAT
1 TT-AATTCATTAT
2207829 TTAATTCATTAT
1 TTAATTCATTAT
2207841 TT
1 TT
2207843 GATCCTTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 14 0.54
13 12 0.46
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (12 bp):
TTAATTCATTAT
Found at i:2209181 original size:90 final size:92
Alignment explanation
Indices: 2209059--2209329 Score: 227
Period size: 89 Copynumber: 3.0 Consensus size: 92
2209049 TTGTCTCATT
* * * *
2209059 TTTGTAGTGTGACATTTACAAGCAATTCAC-TTTCTC-CTTTTCTACC-AAAAGTAAT-TGATTT
1 TTTGTAGTCTGAAATTTACAAGCAATTCACTTTTCTCTC-TTTCTACCAAAAAG-AATCTAATTC
* * * *
2209120 TTAAATATAATTCATGCATTAGTCTAATC
64 TCAAAAATAATCCATACATTAGTCTAATC
* * *
2209149 TTTGTAGTCTGAAATTTATAATCAA-TCAACTTTTCTTTCTTTCTACCAAAAAGAATCTAATTCT
1 TTTGTAGTCTGAAATTTACAAGCAATTC-ACTTTTCTCTCTTTCTACCAAAAAGAATCTAATTCT
2209213 CAAAAATAATCCATACATTAGTCTAATC
65 CAAAAATAATCCATACATTAGTCTAATC
* * * * ** * * * *
2209241 CTTATAAT-TTAATATTTACAATTAA-T--CTTTTCTTTCTTTCTACCAAAAGGAATCCAATTTT
1 TTTGTAGTCTGAA-ATTTACAAGCAATTCACTTTTCTCTCTTTCTACCAAAAAGAATCTAATTCT
* * *
2209302 CAAAAATAATCTATGCGTTAGTCTAATC
65 CAAAAATAATCCATACATTAGTCTAATC
2209330 CTCAAAGTTT
Statistics
Matches: 152, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
89 59 0.39
90 23 0.15
91 19 0.12
92 51 0.34
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.41
Consensus pattern (92 bp):
TTTGTAGTCTGAAATTTACAAGCAATTCACTTTTCTCTCTTTCTACCAAAAAGAATCTAATTCTC
AAAAATAATCCATACATTAGTCTAATC
Found at i:2209235 original size:92 final size:89
Alignment explanation
Indices: 2209126--2209331 Score: 252
Period size: 89 Copynumber: 2.3 Consensus size: 89
2209116 ATTTTTAAAT
* * * * *
2209126 ATAATTCATGCATTAGTCTAATCTTTGTAGTCTGAA-ATTTATAATCAATCAACTTTTCTTTCTT
1 ATAATCCATGCATTAGTCTAATCCTTATAAT-TGAATATTTACAATCAAT---CTTTTCTTTCTT
*
2209190 TCTACCAAAAAGAATCTAATTCTCAAAA
62 TCTACCAAAAAGAATCCAATTCTCAAAA
* * *
2209218 ATAATCCATACATTAGTCTAATCCTTATAATTTAATATTTACAATTAATCTTTTCTTTCTTTCTA
1 ATAATCCATGCATTAGTCTAATCCTTATAATTGAATATTTACAATCAATCTTTTCTTTCTTTCTA
* *
2209283 CCAAAAGGAATCCAATTTTCAAAA
66 CCAAAAAGAATCCAATTCTCAAAA
* *
2209307 ATAATCTATGCGTTAGTCTAATCCT
1 ATAATCCATGCATTAGTCTAATCCT
2209332 CAAAGTTTGA
Statistics
Matches: 99, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
89 59 0.60
91 3 0.03
92 37 0.37
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (89 bp):
ATAATCCATGCATTAGTCTAATCCTTATAATTGAATATTTACAATCAATCTTTTCTTTCTTTCTA
CCAAAAAGAATCCAATTCTCAAAA
Found at i:2209294 original size:89 final size:89
Alignment explanation
Indices: 2209178--2209349 Score: 256
Period size: 89 Copynumber: 1.9 Consensus size: 89
2209168 AATCAATCAA
*
2209178 CTTTTCTTTCTTTCTACCAAAAAGAATCTAATTCTCAAAAATAATCCATACATTAGTCTAATCCT
1 CTTTTCTTTCTTTCTACCAAAAAGAATCCAATTCTCAAAAATAATCCATACATTAGTCTAATCCT
*
2209243 TATAA-TTTAATATTTACAATTAAT
66 CA-AAGTTTAATATTTACAATTAAT
* * * * *
2209267 CTTTTCTTTCTTTCTACCAAAAGGAATCCAATTTTCAAAAATAATCTATGCGTTAGTCTAATCCT
1 CTTTTCTTTCTTTCTACCAAAAAGAATCCAATTCTCAAAAATAATCCATACATTAGTCTAATCCT
*
2209332 CAAAGTTTGATATTTACA
66 CAAAGTTTAATATTTACA
2209350 GTTCATGTAT
Statistics
Matches: 74, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
88 2 0.03
89 72 0.97
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.41
Consensus pattern (89 bp):
CTTTTCTTTCTTTCTACCAAAAAGAATCCAATTCTCAAAAATAATCCATACATTAGTCTAATCCT
CAAAGTTTAATATTTACAATTAAT
Found at i:2215552 original size:166 final size:165
Alignment explanation
Indices: 2215144--2216044 Score: 1013
Period size: 166 Copynumber: 5.5 Consensus size: 165
2215134 GAAACTCTCT
* * * *
2215144 TTTTTTTGAAATATGGGGTTTTCTACTCCGTAAATTTTTTTCAAGGGGATTTTTCTT-GTTTATC
1 TTTTTCTGAAATACGGTGTTTTCTACTCCGTAAATTTTTTT-GAGGGGATTTTTCTTGGTTT-TC
* * *
2215208 AA-TTTTAAAATTCATCAAATATTATCATTTATTTCATATTAATTCAGTTTTAAAAAATATATTT
64 AATTTTTAAAATTCATCAAATATCATTATTTATTTCATATTAATTCAGTTTTAAAAAATA-ATTC
2215272 ATTTTCATGAGTTTTTGATTTTTTCCTTGAAA-TTCCC
128 ATTTTCATGAGTTTTTGATTTTTTCCTTGAAATTTCCC
* *
2215309 TTTTTCT-AAACTACGGTG-TTTCTACTCTGTAAATTTTTTTGGGGGGATTTTTCTTGGTTTTCA
1 TTTTTCTGAAA-TACGGTGTTTTCTACTCCGTAAATTTTTTTGAGGGGATTTTTCTTGGTTTTCA
* *
2215372 ATTTTTAAAATTCATCAAATATTATAATTTATTTCATATTAATTCAGTTTTAAAAAATAATTCAT
65 ATTTTTAAAATTCATCAAATATCATTATTTATTTCATATTAATTCAGTTTTAAAAAATAATTCAT
* * *
2215437 TTTTATGAGTTTTTTTATTTTTTTACTTGAAATTTCCC
130 TTTCATGAG-TTTTTGA-TTTTTTCCTTGAAATTTCCC
* * **
2215475 TTTTTCTGAAATACGGTGTTTTCTACTCC-AAAATTTTTTTGAGGGTATTTTTCACGGTTTTCAA
1 TTTTTCTGAAATACGGTGTTTTCTACTCCGTAAATTTTTTTGAGGGGATTTTTCTTGGTTTTCAA
* *
2215539 TTTTTAAAATTCATCAAATATCATTATTTATTTAATATTAATTCTGTTTTAAAAAATAAATTCAT
66 TTTTTAAAATTCATCAAATATCATTATTTATTTCATATTAATTCAGTTTTAAAAAAT-AATTCAT
* * *
2215604 TTTCAGGAGTTTTTGATTTTTTCCTTAAAATTTTCC
130 TTTCATGAGTTTTTGATTTTTTCCTTGAAATTTCCC
* * * * *
2215640 TTTTTTTTAAATATGGTGTTTTCTACTCCGTAAATTTTTTCGAGGGGATTTTTCTTTGTTTTCAA
1 TTTTTCTGAAATACGGTGTTTTCTACTCCGTAAATTTTTTTGAGGGGATTTTTCTTGGTTTTCAA
* * * * * * **
2215705 TTTTTAAAATTTATTACACATCATTATTAATTTCATTTTAATTTGGTTTTAAAAAATAAATTCAT
66 TTTTTAAAATTCATCAAATATCATTATTTATTTCATATTAATTCAGTTTTAAAAAAT-AATTCAT
* * *
2215770 TTTCTTGAGTTTTTGATTTTTTTCTTGAAATTTTCC
130 TTTCATGAGTTTTTGATTTTTTCCTTGAAATTTCCC
* * ** *
2215806 TTTTT-TCGAATTACGGTATTTTCTACTCCGTAAATTTTTTCAAGGGGATTTTTCTTGGTTTTAA
1 TTTTTCT-GAAATACGGTGTTTTCTACTCCGTAAATTTTTTTGAGGGGATTTTTCTTGGTTTTCA
* * * * *
2215870 AATTTTAAAATTCATCAAACAACATTATTTGA-TTCATATTAATTTAGTTTTAAAAAATTAATTT
65 ATTTTTAAAATTCATCAAATATCATTATTT-ATTTCATATTAATTCAGTTTTAAAAAA-TAATTC
* *
2215934 ATTTTCAT-AATTTTTGGA-TTTTTCTTTGAAA-TT-CC
128 ATTTTCATGAGTTTTT-GATTTTTTCCTTGAAATTTCCC
* * * * * * *
2215969 TCTTTTCATAAAAAATC-GAGTTTTCTATTCCAG-AAATATTTTTG-GGGGATTTTTTTTTGTTT
1 T-TTTTC-TGAAATA-CGGTGTTTTCTACTCC-GTAAATTTTTTTGAGGGGATTTTTCTTGGTTT
**
2216031 AAAATTTTTAAAAT
62 TCAATTTTTAAAAT
2216045 GCATGTAATA
Statistics
Matches: 635, Mismatches: 82, Indels: 39
0.84 0.11 0.05
Matches are distributed among these distances:
163 33 0.05
164 124 0.20
165 107 0.17
166 343 0.54
167 28 0.04
ACGTcount: A:0.28, C:0.10, G:0.10, T:0.52
Consensus pattern (165 bp):
TTTTTCTGAAATACGGTGTTTTCTACTCCGTAAATTTTTTTGAGGGGATTTTTCTTGGTTTTCAA
TTTTTAAAATTCATCAAATATCATTATTTATTTCATATTAATTCAGTTTTAAAAAATAATTCATT
TTCATGAGTTTTTGATTTTTTCCTTGAAATTTCCC
Found at i:2216077 original size:496 final size:496
Alignment explanation
Indices: 2215142--2216077 Score: 1147
Period size: 496 Copynumber: 1.9 Consensus size: 496
2215132 TTGAAACTCT
2215142 CTTTTTTTTGAAATATGGGGTTTTCTACTCCGTAAATTTTTTTCAAGGGGATTTTTCTTGTTTAT
1 CTTTTTTTTGAAATATGGGGTTTTCTACTCCGTAAATTTTTTTCAAGGGGATTTTTCTTGTTTAT
* * * * *
2215207 CAATTTTAAAATTCATCAAATATTATCATTTATTTCATATTAATTCAGTTTTAAAAAATATATTT
66 CAATTTTAAAATTCATCAAACATCATCATTAATTTCATATTAATTCAGTTTTAAAAAATAAATTC
*
2215272 ATTTTCATGAGTTTTTGATTTTTTCCTTGAAATTCCCTTTTTCTAAACTACGGTGTTTCTACTCT
131 ATTTTCATGAGTTTTTGATTTTTTCCTTGAAATTCCCTTTTTCTAAACTACGGTGTTTCTACTCC
*** * * * **
2215337 GTAAATTTTTTTGGGGGGATTTTTCTTGGTTTTCAATTTTTAAAATTCATCAAATATTATAATTT
196 GTAAATTTTTTCAAGGGGATTTTTCTTGGTTTTAAAATTTTAAAATTCATCAAACAACATAATTT
* * ** *
2215402 ATTTCATATTAATTCAGTTTTAAAAAATAATTCATTTTTATGAGTTTTTTTATTTTTTTACTTGA
261 ATTTCATATTAATTCAGTTTTAAAAAATAATTCATTTTCATGAATTTTTGGATTTTTCTA-TTGA
* * * * *
2215467 AATTTCCCTTTTTCTGAAATACGGTGTTTTCTACTCCAAAATTTTTTTGAGGGTATTTTTCACGG
325 AATTTCCCTTTTTCTAAAAAACGGAGTTTTCTACTCCAAAATATTTTTGAGGGGATTTTTCACGG
** * * ** *
2215532 TTTTCAATTTTTAAAATTCATCAAATATCATTATTTATTTAATATTAATTCTGTTTTAAAAAATA
390 TTTAAAATTTTTAAAATGCATCAAATATCATTATTGAACTAACATTAATTCTGTTTTAAAAAATA
2215597 AATTCATTTTCAGGAGTTTTTGATTTTTTCCTTAAAATTTTC
455 AATTCATTTTCAGGAGTTTTTGATTTTTTCCTTAAAATTTTC
* *
2215639 CTTTTTTTT-AAATATGGTGTTTTCTACTCCGTAAA-TTTTTTCGAGGGGATTTTTCTTTGTTT-
1 CTTTTTTTTGAAATATGGGGTTTTCTACTCCGTAAATTTTTTTCAAGGGGATTTTTC-TTGTTTA
* * * * * **
2215701 TCAATTTTTAAAATTTATTACACATCATTATTAATTTCATTTTAATTTGGTTTTAAAAAATAAAT
65 TCAA-TTTTAAAATTCATCAAACATCATCATTAATTTCATATTAATTCAGTTTTAAAAAATAAAT
* * * * * *
2215766 TCATTTTCTTGAGTTTTTGATTTTTTTCTTGAAATTTTCCTTTTT-TCGAATTACGGTATTTTCT
129 TCATTTTCATGAGTTTTTGATTTTTTCCTTGAAA-TTCCCTTTTTCT-AAACTACGGT-GTTTCT
2215830 ACTCCGTAAATTTTTTCAAGGGGATTTTTCTTGGTTTTAAAATTTTAAAATTCATCAAACAACAT
191 ACTCCGTAAATTTTTTCAAGGGGATTTTTCTTGGTTTTAAAATTTTAAAATTCATCAAACAACAT
* * *
2215895 TATTTGA-TTCATATTAATTTAGTTTTAAAAAATTAATTTATTTTCAT-AATTTTTGGATTTTTC
256 AATTT-ATTTCATATTAATTCAGTTTTAAAAAA-TAATTCATTTTCATGAATTTTTGGATTTTTC
*
2215958 T-TTGAAA-TT-CCTCTTTTCATAAAAAATC-GAGTTTTCTATTCCAGAAATATTTTTG-GGGGA
319 TATTGAAATTTCCCT-TTTTC-TAAAAAA-CGGAGTTTTCTACTCCA-AAATATTTTTGAGGGGA
**** ** ** **
2216018 TTTTTTTTTGTTTAAAATTTTTAAAATGCATGTAATATTGTTATTGAACTCCCATTAATT
380 TTTTTCACGGTTTAAAATTTTTAAAATGCATCAAATATCATTATTGAACTAACATTAATT
2216078 TAGTTTTGAA
Statistics
Matches: 368, Mismatches: 60, Indels: 23
0.82 0.13 0.05
Matches are distributed among these distances:
494 3 0.01
495 30 0.08
496 183 0.50
497 37 0.10
498 102 0.28
499 13 0.04
ACGTcount: A:0.28, C:0.11, G:0.10, T:0.52
Consensus pattern (496 bp):
CTTTTTTTTGAAATATGGGGTTTTCTACTCCGTAAATTTTTTTCAAGGGGATTTTTCTTGTTTAT
CAATTTTAAAATTCATCAAACATCATCATTAATTTCATATTAATTCAGTTTTAAAAAATAAATTC
ATTTTCATGAGTTTTTGATTTTTTCCTTGAAATTCCCTTTTTCTAAACTACGGTGTTTCTACTCC
GTAAATTTTTTCAAGGGGATTTTTCTTGGTTTTAAAATTTTAAAATTCATCAAACAACATAATTT
ATTTCATATTAATTCAGTTTTAAAAAATAATTCATTTTCATGAATTTTTGGATTTTTCTATTGAA
ATTTCCCTTTTTCTAAAAAACGGAGTTTTCTACTCCAAAATATTTTTGAGGGGATTTTTCACGGT
TTAAAATTTTTAAAATGCATCAAATATCATTATTGAACTAACATTAATTCTGTTTTAAAAAATAA
ATTCATTTTCAGGAGTTTTTGATTTTTTCCTTAAAATTTTC
Found at i:2218712 original size:157 final size:155
Alignment explanation
Indices: 2218410--2218844 Score: 441
Period size: 157 Copynumber: 2.8 Consensus size: 155
2218400 GGGGTATCAG
* * * *
2218410 GGCATTTTGGTAATTTTTTTAGAATCGAGTCGTAGGTTGTCACCAGGTCCACTTTTATGCTGAAG
1 GGCATTTTCGTAATTTTTTTAGAATCGAGTCCTAGGTTATCACCAGGTCCGCTTTTATGCTGAAG
* * * * * ** * * * *
2218475 GTGGGCATTTAGGATAGGTTCATCACCATTTCTAGT-CTTTTTAGGTTTTTTAGGGTTGTCGGGG
66 GTGGGTATTTAGGATAGGTTCA-CCCCTTTTATAGTCCTTTTTAAGTCCTTTAGGGGTATCGAGA
** * *
2218539 TACTTTTACATGGAAGGTATACCCCT
130 TACACTCACATCGAAGGTATACCCCT
* * * * *
2218565 AGAGGCATTTTTGTAA-TTTTTCAAAATCGAGTCCTAAGTTATCATCAGGTCCGCTTTTATGCTG
1 ---GGCATTTTCGTAATTTTTTTAGAATCGAGTCCTAGGTTATCACCAGGTCCGCTTTTATGCTG
* * *
2218629 AAGGTGAGTATTTAGAATAGGTTCACCCCTTTTATAGTCCTTTGTAAGTCCTTTAGGGGTATCGA
63 AAGGTGGGTATTTAGGATAGGTTCACCCCTTTTATAGTCCTTTTTAAGTCCTTTAGGGGTATCGA
* * *
2218694 GATACACTCGCGTCGAAGGTATCCCCCT
128 GATACACTCACATCGAAGGTATACCCCT
* * * * *
2218722 ---ATTTTCGTAATTTTTTTAGAATCGAGTCCTAGGTTATAACCAGGTTCGCTTTTATACCGAAT
1 GGCATTTTCGTAATTTTTTTAGAATCGAGTCCTAGGTTATCACCAGGTCCGCTTTTATGCTGAAG
* * *
2218784 GTGGGTATTTAGGATAGG-TCAATCCCTTTTGTAGTCTTTTTTAAGTCCTTTAGGGGTATCG
66 GTGGGTATTTAGGATAGGTTC-ACCCCTTTTATAGTCCTTTTTAAGTCCTTTAGGGGTATCG
2218845 GGTACTTCTA
Statistics
Matches: 229, Mismatches: 45, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
151 11 0.05
152 94 0.41
156 10 0.04
157 102 0.45
158 12 0.05
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.39
Consensus pattern (155 bp):
GGCATTTTCGTAATTTTTTTAGAATCGAGTCCTAGGTTATCACCAGGTCCGCTTTTATGCTGAAG
GTGGGTATTTAGGATAGGTTCACCCCTTTTATAGTCCTTTTTAAGTCCTTTAGGGGTATCGAGAT
ACACTCACATCGAAGGTATACCCCT
Found at i:2218792 original size:152 final size:151
Alignment explanation
Indices: 2218571--2218844 Score: 379
Period size: 152 Copynumber: 1.8 Consensus size: 151
2218561 CCCTAGAGGC
* * * * *
2218571 ATTTTTGTAATTTTTCAAAATCGAGTCCTAAGTTATCATCAGGTCCGCTTTTATGCTGAAGGTGA
1 ATTTTCGTAATTTTTCAAAATCGAGTCCTAAGTTATAACCAGGTCCGCTTTTATACCGAAGGTGA
2218636 GTATTTAGAATAGGTTC-ACCCCTTTTATAGTCCTTTGTAAGTCCTTTAGGGGTATCGAGATACA
66 GTATTTAGAATAGG-TCAACCCCTTTTATAGTCCTTTGTAAGTCCTTTAGGGGTATCGAGATACA
2218700 CTCGCGTCGAAGGTATCCCCCT
130 CTCGCGTCGAAGGTATCCCCCT
* * * * *
2218722 ATTTTCGTAATTTTTTTAGAATCGAGTCCTAGGTTATAACCAGGTTCGCTTTTATACCGAATGTG
1 ATTTTCGTAA-TTTTTCAAAATCGAGTCCTAAGTTATAACCAGGTCCGCTTTTATACCGAAGGTG
* * * * * *
2218787 GGTATTTAGGATAGGTCAATCCCTTTTGTAGTCTTTTTTAAGTCCTTTAGGGGTATCG
65 AGTATTTAGAATAGGTCAACCCCTTTTATAGTCCTTTGTAAGTCCTTTAGGGGTATCG
2218845 GGTACTTCTA
Statistics
Matches: 105, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
151 11 0.10
152 94 0.90
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (151 bp):
ATTTTCGTAATTTTTCAAAATCGAGTCCTAAGTTATAACCAGGTCCGCTTTTATACCGAAGGTGA
GTATTTAGAATAGGTCAACCCCTTTTATAGTCCTTTGTAAGTCCTTTAGGGGTATCGAGATACAC
TCGCGTCGAAGGTATCCCCCT
Found at i:2233131 original size:14 final size:16
Alignment explanation
Indices: 2233100--2233146 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
2233090 AAAAAAAGTC
2233100 AAAA-GCAAAAGCACAA
1 AAAATGCAAAAGCA-AA
2233116 AAAATG-AAAAG-AAA
1 AAAATGCAAAAGCAAA
*
2233130 AAAGTGCAAAAGCAAA
1 AAAATGCAAAAGCAAA
2233146 A
1 A
2233147 TAAAAAAGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 7 0.26
15 6 0.22
16 13 0.48
17 1 0.04
ACGTcount: A:0.70, C:0.11, G:0.15, T:0.04
Consensus pattern (16 bp):
AAAATGCAAAAGCAAA
Found at i:2234543 original size:27 final size:27
Alignment explanation
Indices: 2234476--2234747 Score: 420
Period size: 27 Copynumber: 10.0 Consensus size: 27
2234466 TGGCATTTTT
*
2234476 TTTTAAAGTCCACAACTCCGTGGCATCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
2234504 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
2234532 TTTAAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2234559 TTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
2234586 TTTTAAGTCCACTACTTCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
2234613 TTTTAAGTCCACAAC-CCTGTGGCACCC
1 TTTTAAGTCCACAACTCC-GTGGCACCC
*
2234640 TTTTAAGTCCACAACTCCGTGGCGCCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2234667 TTTTAAGTCCACAACTCCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
2234694 TTTTGAAATCCACAACTCCGTGGCATCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
2234722 TTTTAAGTCCACAACTCCGTGGCACC
1 TTTTAAGTCCACAACTCCGTGGCACC
2234748 TTTCAAAGCC
Statistics
Matches: 224, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
26 1 0.00
27 167 0.75
28 56 0.25
ACGTcount: A:0.23, C:0.35, G:0.15, T:0.28
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCC
Found at i:2234760 original size:27 final size:28
Alignment explanation
Indices: 2234480--2235557 Score: 825
Period size: 28 Copynumber: 37.8 Consensus size: 28
2234470 ATTTTTTTTT
* * * * *
2234480 AAAGTCCACAACTCCGTGGCATCCTTTT
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * *
2234508 AAAGTCCACAACTCCGTGGCACCCTTT-
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * *
2234535 AAAGTCCACAACTCCGTGGCACCCTTT-
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * * *
2234562 TAAGTCCACAACTCTGTGGCACCCTTT-
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * **
2234589 TAAGTCCACTACTTC-GTGGCACCCTTT-
1 AAAGCCCAC-AAGTCAGTGGCACCCTTTC
* * ** *
2234616 TAAGTCCACAACCCTGTGGCACCCTTT-
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * * * *
2234643 TAAGTCCACAACTCCGTGGCGCCCTTT-
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * * * * *
2234670 TAAGTCCACAACTCCGTGGCACTCTTTTG
1 AAAGCCCACAAGTCAGTGGCAC-CCTTTC
* * * *
2234699 AAA-TCCACAACTCCGTGGCATCCTTT-
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * * *
2234725 TAAGTCCACAACTCCGTGGCA-CCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
*
2234752 AAAGCCCACAAGTCAGTGGCA-TCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * * *
2234779 CAAGCCCACAAGTTAGTGGCAACTTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * *
2234807 AAAGCCCACGAGTCAGTGGCAACTTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
*
2234835 AAAGCCCACAAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
**
2234863 AAAGCCCACATAAGTTGGTGGCAACCTCTTTC
1 AAAGCCCAC--AAGTCAGTGGC-ACC-CTTTC
** *
2234895 AAAGCCCACACAAGTTGGTGGCAACCCATTTT
1 AAAG-CC-CACAAGTCAGTGGC-ACCC-TTTC
* *
2234927 AAAGCCCACAAGTGAGTGGCACCATTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
*
2234955 AAAGCCCACAAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
*
2234983 AAAGCCCACAAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
** *
2235011 AAAGCTCACACAAGTTGGTGGCAACCTATTTC
1 AAAGC-C-CACAAGTCAGTGGC-ACC-CTTTC
* *
2235043 AAAGCCCACAAGTCAGTGGTATCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
*
2235071 AAAGCCCACAAGTCAATGGCACCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * *
2235099 AAACCCCATAAGGT-AGTGGCACTCTTTTC
1 AAAGCCCACAA-GTCAGTGGCAC-CCTTTC
* *
2235128 AAAGCCCACACGAGTCGGTGGCAACCCTTTTT
1 AAAGCCCACA--AGTCAGTGGC-ACCC-TTTC
* * **
2235160 AAAGCCTACAAGTCAGTAGCATTCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* *
2235188 AAAGCCCACGAGTC-GATGGCAACACTTTTC
1 AAAGCCCACAAGTCAG-TGGC-AC-CCTTTC
*
2235218 AAAGCCCATAAGTCAGTGGCACCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
*
2235246 AAAGCCCACAAGTCAGTGGCACTCTTTTC
1 AAAGCCCACAAGTCAGTGGCAC-CCTTTC
* ** * *
2235275 AAAGCCCGCACGAGTTGGTGGCAATACTTTTC
1 AAAG-CC-CACAAGTCAGTGGC-A-CCCTTTC
* * * *
2235307 AAATCTCACAAGTCAGTGACATCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
** *
2235335 AAAGCCCACAAGTTGGTGGCAACACTTTTC
1 AAAGCCCACAAGTCAGTGGC-AC-CCTTTC
*
2235365 AAAGCCCACAAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * *
2235393 AAAGCCCATAAGTTAGTGGTACCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* *
2235421 AAAGCCCATAAGTCAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
*
2235449 AAAGCCCACAAGTCAGCGGCACCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
* * *
2235477 AAAGCCCACGAGTTAGTGGCATCCTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTC
*
2235505 AAAGCCCACAAGTCAGTGGCA-TCTCTTC
1 AAAGCCCACAAGTCAGTGGCACCCT-TTC
*
2235533 AAAGCCCACACAAGTTAGTGGCACC
1 AAAG-CC-CACAAGTCAGTGGCACC
2235558 TTTTTCTTGA
Statistics
Matches: 887, Mismatches: 123, Indels: 77
0.82 0.11 0.07
Matches are distributed among these distances:
26 9 0.01
27 204 0.23
28 412 0.46
29 42 0.05
30 123 0.14
31 28 0.03
32 64 0.07
33 2 0.00
34 3 0.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.24
Consensus pattern (28 bp):
AAAGCCCACAAGTCAGTGGCACCCTTTC
Found at i:2235231 original size:147 final size:144
Alignment explanation
Indices: 2234746--2235561 Score: 640
Period size: 147 Copynumber: 5.6 Consensus size: 144
2234736 CTCCGTGGCA
* * * * * * *
2234746 CCTTTCAAAGCCCACAAGTCAGTGGC-A-TC-TTTCCAAGCCCACAAGTTAGTGGCAACTTTTCA
1 CCTTTCAAAGCCCACGAGTGA-TGGCAACACTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCA
* * * *
2234808 AAGCCCACGA-GTCAGTGGCAACTTTTCAAAGCCCACA--AGTCAGTGGC-ATCC-TTTCAAAGC
65 AACCCCACAAGGT-AGTGGCACCTTTTCAAAGCCCACACGAGTCGGTGGCAATCCTTTTCAAAGC
* ** *
2234868 CCACATAAGTTGGTGGCAAC
129 CTAC--AAGTCAGT-GC-AT
* * * * *
2234888 CTCTTTCAAAGCCCACACAAGTTGGTGGCAACCCATTTT-AAAGCCCACAAGTGAGTGGCACCAT
1 C-CTTTCAAAG-CC-CACGAG-TGATGGCAACAC-TTTTCAAAGCCCACAAGTCAGTGGCACCCT
* *
2234952 TTCAAAGCCCACAA-GTCAGTGGCATCC-TTTCAAAGCCCACA--AGTCAGTGGC-ATCC-TTTC
61 TTCAAACCCCACAAGGT-AGTGGCA-CCTTTTCAAAGCCCACACGAGTCGGTGGCAATCCTTTTC
* ** *
2235011 AAAGCTCACACAAGTTGGTGGCAA
124 AAAGC-C-TACAAGTCAGT-GCAT
* * * * *
2235035 CCTATTTCAAAGCCCACAAGTCAGTGGTATC-C-TTTCAAAGCCCACAAGTCAATGGCACCCTTT
1 CC--TTTCAAAGCCCACGAGTGA-TGGCAACACTTTTCAAAGCCCACAAGTCAGTGGCACCCTTT
* * *
2235098 CAAACCCCATAAGGTAGTGGCACTCTTTTCAAAGCCCACACGAGTCGGTGGCAACCCTTTTTAAA
63 CAAACCCCACAAGGTAGTGGCAC-CTTTTCAAAGCCCACACGAGTCGGTGGCAATCCTTTTCAAA
2235163 GCCTACAAGTCAGTAGCAT
127 GCCTACAAGTCAGT-GCAT
* *
2235182 TCTTTCAAAGCCCACGAGTCGATGGCAACACTTTTCAAAGCCCATAAGTCAGTGGCACCCTTTCA
1 CCTTTCAAAGCCCACGAGT-GATGGCAACACTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCA
* * * *
2235247 AAGCCCACAA-GTCAGTGGCACTCTTTTCAAAGCCCGCACGAGTTGGTGGCAATACTTTTCAAA-
65 AACCCCACAAGGT-AGTGGCAC-CTTTTCAAAGCCCACACGAGTCGGTGGCAATCCTTTTCAAAG
*
2235310 TCTCACAAGTCAGTGACAT
128 CCT-ACAAGTCAGTG-CAT
* * *
2235329 CCTTTCAAAGCCCACAAGTTGGTGGCAACACTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCA
1 CCTTTCAAAGCCCACGAG-TGATGGCAACACTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCA
* * * * * * *
2235394 AAGCCCATAAGTTAGTGGTACCCTTTCAAAGCCCATA--AGTCAGTGGC-ATCC-TTTCAAAGCC
65 AACCCCACAAGGTAGTGGCACCTTTTCAAAGCCCACACGAGTCGGTGGCAATCCTTTTCAAAGCC
* * *
2235455 CACAAGTCAGCGGCAC
130 TACAAGTCAG-TGCAT
* * *
2235471 CCTTTCAAAGCCCACGAGTTAGTGGCATC-C-TTTCAAAGCCCACAAGTCAGTGGCA-TCTCTTC
1 CCTTTCAAAGCCCACGAGTGA-TGGCAACACTTTTCAAAGCCCACAAGTCAGTGGCACCCT-TTC
*
2235533 AAAGCCCACACAAGTTAGTGGCACCTTTT
64 AAA-CCC-CACAAGGTAGTGGCACCTTTT
2235562 TCTTGAAAAG
Statistics
Matches: 569, Mismatches: 69, Indels: 72
0.80 0.10 0.10
Matches are distributed among these distances:
139 2 0.00
140 31 0.05
141 4 0.01
142 60 0.11
143 18 0.03
144 52 0.09
145 49 0.09
146 34 0.06
147 197 0.35
148 106 0.19
149 13 0.02
150 3 0.01
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (144 bp):
CCTTTCAAAGCCCACGAGTGATGGCAACACTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAA
ACCCCACAAGGTAGTGGCACCTTTTCAAAGCCCACACGAGTCGGTGGCAATCCTTTTCAAAGCCT
ACAAGTCAGTGCAT
Found at i:2235722 original size:48 final size:48
Alignment explanation
Indices: 2235667--2235798 Score: 183
Period size: 48 Copynumber: 2.8 Consensus size: 48
2235657 GGCACCTTTA
* *
2235667 TTAGCTCAATGTCACTGGCCTTGAATCAGCACATTGTCCACTTTTCTC
1 TTAGCTCAATGTCACTGGCCTTGAATCAGCACATTGTCCACTTTCCCC
* *
2235715 TTAGCTCAATGTCGCTGGCCTTGAATCAACACATTGTCCACTTTCCCC
1 TTAGCTCAATGTCACTGGCCTTGAATCAGCACATTGTCCACTTTCCCC
* * * **
2235763 TTAGCTCGATGTCATTGGCCTTAAATTGGCACATTG
1 TTAGCTCAATGTCACTGGCCTTGAATCAGCACATTG
2235799 GCACTCCTCT
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (48 bp):
TTAGCTCAATGTCACTGGCCTTGAATCAGCACATTGTCCACTTTCCCC
Found at i:2235884 original size:29 final size:29
Alignment explanation
Indices: 2235839--2235899 Score: 113
Period size: 29 Copynumber: 2.1 Consensus size: 29
2235829 CAGGCCTTCA
2235839 ATCTGCACACGGACATATCGCGGACACTG
1 ATCTGCACACGGACATATCGCGGACACTG
*
2235868 ATCTGCACACGGGCATATCGCGGACACTG
1 ATCTGCACACGGACATATCGCGGACACTG
2235897 ATC
1 ATC
2235900 ATGCCCTTAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.26, C:0.31, G:0.25, T:0.18
Consensus pattern (29 bp):
ATCTGCACACGGACATATCGCGGACACTG
Found at i:2242367 original size:79 final size:79
Alignment explanation
Indices: 2242220--2242422 Score: 232
Period size: 79 Copynumber: 2.6 Consensus size: 79
2242210 AAATGGGCTA
* * * * * *
2242220 GAGTATCCCCGATTATG-GAAAATCAGTGTTCT-AGAAATAAAAATTGGGGTTGGAGTATCCCCT
1 GAGTATCCCCGATTATGAG-AAATCGGTATTTTGA-AAAT-AAAATCGGGGTTGAAGTATCCCCG
*
2242283 CGAAAATAATAGGGTTG
63 CGAAAATAACAGGGTTG
* *
2242300 GAGTATTCCTGATTAT-AGAAAATCGGTATTTTGAAAATAAAATCGGGGTTGAAGTATCCCCGCG
1 GAGTATCCCCGATTATGAG-AAATCGGTATTTTGAAAATAAAATCGGGGTTGAAGTATCCCCGCG
2242364 AAAATAACAGGGTTG
65 AAAATAACAGGGTTG
* * * *
2242379 GAGTATCCCCGATTGTGAGAAATTGGTGTTTTGGAAATAAAATC
1 GAGTATCCCCGATTATGAGAAATCGGTATTTTGAAAATAAAATC
2242423 AAAGTTGGAG
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
79 72 0.69
80 32 0.30
81 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.29
Consensus pattern (79 bp):
GAGTATCCCCGATTATGAGAAATCGGTATTTTGAAAATAAAATCGGGGTTGAAGTATCCCCGCGA
AAATAACAGGGTTG
Found at i:2242478 original size:48 final size:48
Alignment explanation
Indices: 2242371--2242484 Score: 131
Period size: 48 Copynumber: 2.3 Consensus size: 48
2242361 GCGAAAATAA
* *
2242371 CAGGGTTGGAGTATCCCCGATTGTGAGAAATTGGTGTTTTGGAAATAAAAT
1 CAGGGTTGGAGTAT---CGATTGTGAAAAATTGGTGTTTTAGAAATAAAAT
**
2242422 CAAAGTTGGAGTATCGATTGTGAAAAATTGGTAG-TTTAGAAATAAAAT
1 CAGGGTTGGAGTATCGATTGTGAAAAATTGGT-GTTTTAGAAATAAAAT
* *
2242470 CGGGGTTGGGGTATC
1 CAGGGTTGGAGTATC
2242485 CCCTCGGAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
48 41 0.76
49 1 0.02
51 12 0.22
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.31
Consensus pattern (48 bp):
CAGGGTTGGAGTATCGATTGTGAAAAATTGGTGTTTTAGAAATAAAAT
Found at i:2242604 original size:108 final size:108
Alignment explanation
Indices: 2242456--2242663 Score: 290
Period size: 108 Copynumber: 1.9 Consensus size: 108
2242446 AAATTGGTAG
* * * *
2242456 TTTAGAAATAAAATCGGGGTTGGGGTATCCCCTCGGAAATAACGAGATTAGAGTATCCTCGATGA
1 TTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGAGATTAGAGTATCCCCGATGA
*
2242521 AATAACAGGGTTGGAGTACCCCCGATTATGAAAAAACAATATT
66 AATAACAGGGTTGGAGTACCCCCAATTATGAAAAAACAATATT
* * * * * *
2242564 TTTAGATATAAAGCCGGGGTTGGAGTGTCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGA
1 TTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGAGATTAGAGTATCCCCGATGA
* * *
2242629 AATAATAGGGTTGGAGTATCCCCAATTGTGAAAAA
66 AATAACAGGGTTGGAGTACCCCCAATTATGAAAAA
2242664 TTGGTGTTTT
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
108 86 1.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (108 bp):
TTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGAGATTAGAGTATCCCCGATGA
AATAACAGGGTTGGAGTACCCCCAATTATGAAAAAACAATATT
Found at i:2242622 original size:28 final size:28
Alignment explanation
Indices: 2242578--2242651 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 28
2242568 GATATAAAGC
*
2242578 CGGGGTTGGAGTGTCCCCTCGA-AAATAA
1 CGGGGTTGGAGTATCCCC-CGAGAAATAA
2242606 CGGGGTTGGAGTAT-CCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCCGA-GAAATAA
**
2242634 TAGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
2242652 AATTGTGAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
26 3 0.08
27 3 0.08
28 31 0.77
29 3 0.08
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCCGAGAAATAA
Found at i:2242701 original size:51 final size:51
Alignment explanation
Indices: 2242638--2242781 Score: 173
Period size: 51 Copynumber: 2.8 Consensus size: 51
2242628 AAATAATAGG
*
2242638 GTTGGAGTATCCCCAATTGTGAAAAATTGGTGTTTTGAAAATAAAATCGAA
1 GTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGAAAATAAAATCGAA
* ** * * *
2242689 GTTGGAGTATCCCAAATTGTGGTAAATCGATGCTTT-AGAAATAAAATCGGA
1 GTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGA-AAATAAAATCGAA
* ** *
2242740 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAAT
1 GTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGAAAAT
2242782 GGAACCGGGA
Statistics
Matches: 75, Mismatches: 16, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
50 1 0.01
51 74 0.99
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.31
Consensus pattern (51 bp):
GTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGAAAATAAAATCGAA
Found at i:2245305 original size:19 final size:19
Alignment explanation
Indices: 2245281--2245320 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
2245271 TTAATTCTTC
*
2245281 TTGCATAGCCATAATCCAA
1 TTGCATAGCAATAATCCAA
2245300 TTGCATAGCAATAATCCAA
1 TTGCATAGCAATAATCCAA
2245319 TT
1 TT
2245321 TTCTTCTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (19 bp):
TTGCATAGCAATAATCCAA
Found at i:2246551 original size:20 final size:20
Alignment explanation
Indices: 2246528--2246582 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
2246518 AAGTACCCAG
**
2246528 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTAACA
* *
2246548 ATGTATCGATACATGTAAGA
1 ATGTATCGATACATTTAACA
2246568 ATGTATCGATACATT
1 ATGTATCGATACATT
2246583 CTTTTTACCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTTAACA
Found at i:2253629 original size:14 final size:14
Alignment explanation
Indices: 2253598--2253630 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
2253588 CTTCAAAATG
2253598 ACAAAAAAAAAAGT
1 ACAAAAAAAAAAGT
*
2253612 -CAAAAGAAAAAGT
1 ACAAAAAAAAAAGT
2253625 ACAAAA
1 ACAAAA
2253631 TATGAAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.76, C:0.09, G:0.09, T:0.06
Consensus pattern (14 bp):
ACAAAAAAAAAAGT
Found at i:2253663 original size:20 final size:19
Alignment explanation
Indices: 2253640--2253689 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
2253630 ATATGAAAAG
2253640 AAAAACAAAAAAAAAAGTGC
1 AAAAACAAAAAAAAAAG-GC
* * *
2253660 AAAAGCAAAATAAAAAGGG
1 AAAAACAAAAAAAAAAGGC
*
2253679 AACAACAAAAA
1 AAAAACAAAAA
2253690 TCTAAAAAAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.74, C:0.10, G:0.12, T:0.04
Consensus pattern (19 bp):
AAAAACAAAAAAAAAAGGC
Found at i:2255158 original size:28 final size:27
Alignment explanation
Indices: 2255087--2255281 Score: 219
Period size: 27 Copynumber: 7.1 Consensus size: 27
2255077 TGGCATTCCT
2255087 TTTTAAGTCCACAACTCTGTGGCAACC
1 TTTTAAGTCCACAACTCTGTGGCAACC
* * *
2255114 TTTTCAGTCCACAACTCTATGGCATCC
1 TTTTAAGTCCACAACTCTGTGGCAACC
* ** *
2255141 TTTTAAAGTCCATAACTCCATGGCATCC
1 TTTT-AAGTCCACAACTCTGTGGCAACC
*
2255169 TTTTAAAGTCCACAACTCCGTGGCAACC
1 TTTT-AAGTCCACAACTCTGTGGCAACC
* * *
2255197 CTTTAAGTCTACAGCTCTGTGGCAACC
1 TTTTAAGTCCACAACTCTGTGGCAACC
*
2255224 TTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCTGTGGCAACC
* * * *
2255251 TTTCAAAGTCCACAAGTCAGTGGCACCC
1 TTT-TAAGTCCACAACTCTGTGGCAACC
2255279 TTT
1 TTT
2255282 CACAGCCCAC
Statistics
Matches: 146, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
27 74 0.51
28 72 0.49
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.30
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCTGTGGCAACC
Found at i:2255282 original size:28 final size:28
Alignment explanation
Indices: 2255215--2255813 Score: 761
Period size: 28 Copynumber: 21.1 Consensus size: 28
2255205 CTACAGCTCT
* * * * *
2255215 GTGGCAACCTTT-TAAGTCCACAACTCT
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
2255242 GTGGCACCCTTTCAAAGTCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
2255270 GTGGCACCCTTTCACAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* *
2255298 GTGGCACCATTTCAAAGCCCACAAGCCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* * *
2255326 ATGGTAACTCTTTTCAAAGCCCACAAGTCA
1 GTGG-CAC-CCTTTCAAAGCCCACAAGTCA
2255356 GTGGCA-CCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
2255383 GTGGCACCCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
2255411 GTGGCACCCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* *
2255439 GTGGCACTCTTTTCAAAGCCCACACAAGTCG
1 GTGGCAC-CCTTTCAAAG-CC-CACAAGTCA
*
2255470 GTGGCAACTCTTTCAAAGCCCACAAGTCA
1 GTGGC-ACCCTTTCAAAGCCCACAAGTCA
*
2255499 GTGGCACCCTTTCAAAGCCCACAAGTTA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* * *
2255527 GCGGCACTCTTTTCAAAGCCCATAAGTCA
1 GTGGCAC-CCTTTCAAAGCCCACAAGTCA
*
2255556 GTGGCATCCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* * *
2255584 GTAGCATCCTTTCAAAGCCCACAAGTTA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* * *
2255612 ATGGCAACCTTTTAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
2255640 GTGGCACCCTTTCAAAACCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* * *
2255668 ATGGCACTCTTTTCAAAGCCCATAAGTCA
1 GTGGCAC-CCTTTCAAAGCCCACAAGTCA
* * *
2255697 ATGGCATCTTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* *
2255725 ATGGCATCCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
*
2255753 ATGGCACCCTTTCAAAGCCCACAAGTCA
1 GTGGCACCCTTTCAAAGCCCACAAGTCA
* *
2255781 GTGGCACTCTTTTCAAAGCCCACAAGCCA
1 GTGGCAC-CCTTTCAAAGCCCACAAGTCA
2255810 GTGG
1 GTGG
2255814 TAACTCTTTT
Statistics
Matches: 508, Mismatches: 53, Indels: 20
0.87 0.09 0.03
Matches are distributed among these distances:
27 37 0.07
28 327 0.64
29 95 0.19
30 26 0.05
31 21 0.04
32 2 0.00
ACGTcount: A:0.30, C:0.32, G:0.17, T:0.22
Consensus pattern (28 bp):
GTGGCACCCTTTCAAAGCCCACAAGTCA
Found at i:2255384 original size:113 final size:113
Alignment explanation
Indices: 2255232--2255813 Score: 835
Period size: 113 Copynumber: 5.1 Consensus size: 113
2255222 CCTTTTAAGT
* * * * *
2255232 CCACAACTCTGTGGCACCCTTTCAAAGTCCACAAGTCAGTGGCACCCTTTCACAGCCCACAAGTC
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTC
* * * *
2255297 AGTGGCACCATTTCAAAGCCCACAAGCCAATGGTAACTCTTTTCAAAGC
66 AGTGGCACCCTTTCAAAGCCCACAAGTCAGTGG-CACTCTTTTCAAAGC
2255346 CCACAAGTCAGTGGCA-CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTC
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTC
2255410 AGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCC
66 AGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAG-C
* *
2255459 CACACAAGTCGGTGGCAACTCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAG
1 C-CACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAG
* * * * *
2255524 TTAGCGGCACTCTTTTCAAAGCCCATAAGTCAGTGGCA-TCCTTTCAAAGC
64 TCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
* * * * *
2255574 CCACAAGTCAGTAGCATCCTTTCAAAGCCCACAAGTTAATGGCAACCTTTTAAAGCCCACAAGTC
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTC
* *
2255639 AGTGGCACCCTTTCAAAACCCACAAGTCAATGGCACTCTTTTCAAAGC
66 AGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
* * * * *
2255687 CCATAAGTCAATGGCATCTTTTCAAAGCCCACAAGTCAATGGCATCCTTTCAAAGCCCACAAGTC
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTC
*
2255752 AATGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
66 AGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
*
2255800 CCACAAGCCAGTGG
1 CCACAAGTCAGTGG
2255814 TAACTCTTTT
Statistics
Matches: 421, Mismatches: 41, Indels: 13
0.89 0.09 0.03
Matches are distributed among these distances:
112 36 0.09
113 252 0.60
114 42 0.10
115 3 0.01
116 63 0.15
117 25 0.06
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.21
Consensus pattern (113 bp):
CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTC
AGTGGCACCCTTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGC
Found at i:2255405 original size:141 final size:141
Alignment explanation
Indices: 2255215--2255840 Score: 798
Period size: 141 Copynumber: 4.4 Consensus size: 141
2255205 CTACAGCTCT
* * * * *
2255215 GTGGCAACCTTT-TAAGTCCACAACTCTGTGGCAC-CCTTTCAAAGTCCACAAGTCAGTGGCACC
1 GTGGC-ACCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
2255278 CTTTCACAGCCCACAAGTCAGTGGCA-CCATTTCAAAGCCCACAAGCCAATGGTAACTCTTTTCA
65 CTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAATGGCAAC-CTTTTCA
2255342 AAGCCCACAAGTCA
128 AAGCCCACAAGTCA
2255356 GTGGCACCTTTCAAAGCCCACAAGTCAGTGGCAC-CCTTTCAAAGCCCACAAGTCAGTGGCACCC
1 GTGGCACCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCC
* **
2255420 TTTCAAAGCCCACAAGTCAGTGGCACTCTTTTCAAAGCCCACACAAGTCGGTGGCAA-CTCTTTC
66 TTTCAAAGCCCACAAGTCAGTGGCA-TCCTTTCAAAG-CC-CACAAGTCAATGGCAACCT-TTTC
2255484 AAAGCCCACAAGTCA
127 AAAGCCCACAAGTCA
* * * * *
2255499 GTGGCACCCTTTCAAAGCCCACAAGTTAGCGGCACTCTTTTCAAAGCCCATAAGTCAGTGGCATC
1 GTGGCA-CCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACC
* *
2255564 CTTTCAAAGCCCACAAGTCAGTAGCATCCTTTCAAAGCCCACAAGTTAATGGCAACCTTTT-AAA
65 CTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCAACCTTTTCAAA
2255628 GCCCACAAGTCA
130 GCCCACAAGTCA
* * * * * *
2255640 GTGGCACCCTTTCAAAACCCACAAGTCAATGGCACTCTTTTCAAAGCCCATAAGTCAATGGCATC
1 GTGGCA-CCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACC
* * *
2255705 TTTTCAAAGCCCACAAGTCAATGGCATCCTTTCAAAGCCCACAAGTCAATGGC-ACCCTTTCAAA
65 CTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCAACCTTTTCAAA
2255769 GCCCACAAGTCA
130 GCCCACAAGTCA
* * * *
2255781 GTGGCACTCTTTTCAAAGCCCACAAGCCAGTGGTAACTCTTTTCCAAACCCACACAAGTC
1 GTGGCAC-C-TTTCAAAGCCCACAAGTCAGTGG-CACTCCTTT-CAAAGCC-CACAAGTC
2255841 GATAGCAACT
Statistics
Matches: 433, Mismatches: 37, Indels: 26
0.87 0.07 0.05
Matches are distributed among these distances:
140 13 0.03
141 222 0.51
142 46 0.11
143 40 0.09
144 54 0.12
145 58 0.13
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.22
Consensus pattern (141 bp):
GTGGCACCTTTCAAAGCCCACAAGTCAGTGGCACTCCTTTCAAAGCCCACAAGTCAGTGGCACCC
TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCAACCTTTTCAAAG
CCCACAAGTCA
Found at i:2256761 original size:20 final size:20
Alignment explanation
Indices: 2256738--2256842 Score: 75
Period size: 20 Copynumber: 4.7 Consensus size: 20
2256728 AAGTACCCAG
2256738 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
2256758 ATGTATCAATACATATATGA
1 ATGTATCGATACATTTTTCA
2256778 ATGTATCGATACATTCTGTCTTTTTACCTA
1 ATGTATCGATACA-------TTTTT--C-A
2256808 GATGTATCGATACATTTTTCA
1 -ATGTATCGATACATTTTTCA
2256829 ATGTATCGATACAT
1 ATGTATCGATACAT
2256843 CTAGTTAAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 22
0.69 0.08 0.23
Matches are distributed among these distances:
20 42 0.64
21 1 0.02
22 1 0.02
24 5 0.08
27 3 0.05
30 1 0.02
31 13 0.20
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Done.