genome.fa.s550.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold550
Parameters: 2 7 7 80 10 50 1000
Length:  40184

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4195--4219	13	1.9	13	100	0	50	36	16	16	32	1.90
4174--4243	34	2.0	35	86	2	97	32	12	12	41	1.82
4287--4311	13	1.9	13	100	0	50	32	16	16	36	1.90
4320--4441	53	2.3	52	88	2	190	34	18	18	27	1.95
7886--7910	13	1.9	13	100	0	50	36	16	16	32	1.90
7975--7999	13	1.9	13	100	0	50	32	16	16	36	1.90
9294--9334	16	2.6	16	88	0	55	56	12	19	12	1.67
11530--11600	35	2.0	35	86	5	99	32	12	12	42	1.81
11656--11799	53	2.7	55	81	10	158	32	19	17	30	1.95
11679--11808	53	2.4	52	83	8	181	35	18	16	29	1.93
15518--15558	16	2.6	16	88	0	55	12	19	12	56	1.67
16604--16634	13	2.4	13	94	0	53	35	16	9	38	1.81
16749--16867	52	2.3	52	92	0	202	28	18	19	33	1.95
16747--16887	52	2.7	51	85	4	194	29	18	19	32	1.95
16876--16900	13	1.9	13	100	0	50	36	16	16	32	1.90
16966--16990	13	1.9	13	100	0	50	32	16	16	36	1.90
16944--17010	33	2.0	33	88	0	98	40	13	11	34	1.81
19221--19261	16	2.6	16	88	0	55	12	19	12	56	1.67
20306--20336	13	2.4	13	94	0	53	35	16	9	38	1.81
20451--20569	52	2.3	52	92	0	202	28	18	19	33	1.95
20449--20589	52	2.7	51	85	4	194	29	18	19	32	1.95
20578--20602	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20668--20692	13	1.9	13	100	0	50	32	16	16	36	1.90
20646--20712	33	2.0	33	88	0	98	40	13	11	34	1.81
22924--22964	16	2.6	16	88	0	55	12	19	12	56	1.67
24009--24039	13	2.4	13	94	0	53	35	16	9	38	1.81
24154--24272	52	2.3	52	92	0	202	28	18	19	33	1.95
24152--24292	52	2.7	51	85	4	194	29	18	19	32	1.95
24281--24305	13	1.9	13	100	0	50	36	16	16	32	1.90
24371--24395	13	1.9	13	100	0	50	32	16	16	36	1.90
24349--24415	33	2.0	33	88	0	98	40	13	11	34	1.81
25352--26496	49	23.5	49	84	6	1528	32	17	26	24	1.97
25285--26496	383	3.1	383	94	3	1992	32	17	26	24	1.97
25285--26496	101	12.4	98	93	3	1797	32	17	26	24	1.97
26508--26600	33	2.8	33	93	6	163	15	19	36	29	1.92
26608--27514	34	26.4	33	75	16	616	33	12	33	19	1.90
26607--26796	71	2.7	69	92	3	301	35	12	33	18	1.89
26805--27506	34	21.0	33	79	14	732	33	12	33	20	1.90
26719--26888	87	1.9	88	92	1	288	32	14	33	19	1.91
26807--27500	70	10.4	67	85	8	754	32	12	33	20	1.91
26569--27506	369	2.7	348	85	10	1138	33	12	33	20	1.90
26871--27593	62	11.0	62	78	13	399	33	13	32	20	1.91
27416--27469	27	2.0	27	92	0	90	25	14	37	22	1.93
27116--27500	61	6.0	61	85	8	434	32	12	33	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27477--27685	62	3.3	62	84	8	246	29	17	28	24	1.97
27509--27705	31	6.3	31	84	8	240	27	18	29	23	1.98
27444--27705	94	2.8	93	88	2	346	29	17	30	22	1.97
27685--27722	17	2.2	17	90	0	58	28	18	34	18	1.95
32697--32736	21	1.9	21	100	0	80	30	20	25	25	1.99
35956--36074	52	2.3	52	95	0	211	29	17	19	33	1.95
35954--36094	52	2.7	51	87	4	203	30	17	19	32	1.95
36083--36107	13	1.9	13	100	0	50	36	16	16	32	1.90
36173--36197	13	1.9	13	100	0	50	32	16	16	36	1.90
36151--36217	33	2.0	33	88	0	98	40	13	11	34	1.81
38429--38469	16	2.6	16	88	0	55	12	19	12	56	1.67
39513--39543	13	2.4	13	94	0	53	35	16	9	38	1.81
39656--39774	52	2.3	52	92	0	202	28	18	19	33	1.95
39654--39794	52	2.7	51	85	4	194	29	18	19	32	1.95
39783--39807	13	1.9	13	100	0	50	36	16	16	32	1.90
39873--39897	13	1.9	13	100	0	50	32	16	16	36	1.90
39851--39917	33	2.0	33	88	0	98	40	13	11	34	1.81

Tables:   1

The End!