Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold551
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35210
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.15
Found at i:2313 original size:404 final size:404
Alignment explanation
Indices: 1296--2467 Score: 1793
Period size: 403 Copynumber: 2.9 Consensus size: 404
1286 CAGCTGGGCA
*
1296 CGACCTGGATTTCAATCGAGAGGGACACTCTGCCGGGGCGCGACCCATGCCAGGCGCATGGAGCG
1 CGACCTGGATTT-AATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
1361 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
*
1426 CCTGCCCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
130 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
* *
1491 CAACCTACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
195 CTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
* * **
1556 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCA
260 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
* *
1621 CGGATCACTTGGACCGCGTAGGGTCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACG
325 CGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
*
1686 ATCGCAAGGCTCGCG
390 ATCGCAAGGCACGCG
1701 CGACCTGGATTTTAATCGAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
1 CGACCTGGA-TTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
1764 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
*
1829 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGA
130 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
* *
1894 CTACCGACTCGAATTCGGGAACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
195 CTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
1959 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
260 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
*
2024 CGGATCACTTGGACCGCGAAGGGTC-CCGTCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
325 CGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
2088 ATCGCAAGGCACGCG
390 ATCGCAAGGCACGCG
* ** * * *
2103 CGACCTGGATCTTAACCGAGAGGGACACTCTGCCGGGGCGCGTTCAATGCCAGGCGCATCGAGCA
1 CGACCTGGAT-TTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
* * * * *
2168 CAATCCCCGACAGACAACCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTG-C
2233 CCCTGCTC-ACGGGGCATGGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGG
129 CCCTGCTCGA-GGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGG
* * * *
2296 GACTACCAACTCGAATTCGGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGC
193 GACTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGC
* * ** ** * * *
2359 ACGACCACGCCCCTTGTACCCCACACACGCGTGCCATGCGATCGGCAGCATACGGCGACCG-GGG
256 ACGACCACGCCCCGT-TA-CCCGCACACGCGTGCCAAACGATC-GC-GCACGCAGAGACCGACGG
** * *
2423 ACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCATCACCGC
317 -CCTCACCACGGATCACTTGGACCGCGAAGGGTCTCCATCACCGC
2468 GACAAGGTTT
Statistics
Matches: 707, Mismatches: 46, Indels: 24
0.91 0.06 0.03
Matches are distributed among these distances:
401 1 0.00
402 75 0.11
403 314 0.44
404 185 0.26
405 56 0.08
406 24 0.03
407 4 0.01
408 39 0.06
409 9 0.01
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.12
Consensus pattern (404 bp):
CGACCTGGATTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGC
AATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCC
CTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGAC
TACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGAC
CACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCAC
GGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACGA
TCGCAAGGCACGCG
Found at i:3629 original size:103 final size:101
Alignment explanation
Indices: 3477--3665 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
3467 CGGCCCGGGG
*
3477 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
3542 CTCGCCCACCCTCAGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCAGGTGCGGCCAGGAGCACGGTGC
* * * *
3578 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
3643 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCAGGTGCGG
3666 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.41, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCAGGTGCGGCCAGGAGCACGGTGC
Found at i:3905 original size:64 final size:64
Alignment explanation
Indices: 3826--3947 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
3816 CGTTTGGTTG
*
3826 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
3890 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
3948 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:4465 original size:103 final size:101
Alignment explanation
Indices: 4313--4501 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
4303 CGGTCCGGGG
*
4313 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
4378 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
4414 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
4479 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
4502 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:4604 original size:836 final size:833
Alignment explanation
Indices: 2860--5534 Score: 3901
Period size: 836 Copynumber: 3.2 Consensus size: 833
2850 CAAAAGCCAC
* * * * * *
2860 GAGCATGGTGCGCGCCCTTCCCGCCCCC-AGGGTGGGAGCGGTCGGGGCGCGCACCATGCGGCGC
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCATGCGGGGC
** * * *
2924 AATGGGTGCGCACCCTTGCCGGGGTACCCAACCGACCGATGCAACGGTAAGGGACGAACACGTTT
66 ACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTT
* * * * * *
2989 GGAGAGGGGAGGGACAGATGCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTT-G
131 GGAGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATG-TTAG
* * * *
3053 -GAGGGGGGAGGGACGGATGCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCT
195 AGAGGGGGGAGGGCCGGATGGTT-GGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCT
3117 ATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGG
259 ATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGG
* ***
3182 TGGGGGGAAG-CATTGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGC
324 TGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGC
3246 AGCCCCGCAGGGCACCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGC
389 AGCCCCGCAGGGCACCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGC
3311 TTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCT
454 TTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCT
3376 CCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTC
519 CCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTC
*
3441 GGGTGCGCGGGGCCGAGGCTCGCACCCGGCCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCG
584 GGGTGCGCGGGGCCGAGGCTCGCACCCGGTCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCG
*
3506 GCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCAGGTGCGGCCAGGAGC
649 GCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGC
3571 ACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCC
714 ACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCC
3636 GGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
779 GGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
3691 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TCGCGGGG
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCAT-GCGGGG
*
3755 CACCGGGTGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
65 CACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
*
3820 TGGTTGGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
130 TGG--AGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
3885 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
193 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
3950 TATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCG
258 TATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCG
4015 GTGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGG
323 GTGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGG
4080 CAGCCCCGCAGGGCACCCCACTGCCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGA
388 CAGCCCCGCAGGGCACCCCACTG-CCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGA
4145 GCTTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTT
452 GCTTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTT
4210 CTCCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCC
517 CTCCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCC
4275 TCGGGTGCGCGGGGCCGAGGCTCGCACCCGGTCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGG
582 TCGGGTGCGCGGGGCCGAGGCTCGCACCCGGTCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGG
4340 CGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGA
647 CGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGA
4405 GCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCG
712 GCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCG
4470 CCGGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
777 CCGGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
4527 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TCGCGGGG
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCAT-GCGGGG
*
4591 CACCGGGTGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
65 CACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
*
4656 TGGTTGGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
130 TGG--AGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
4721 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
193 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
* *
4786 TATCGGTGCCGAATTCGCGGTCCTCGGCACCGT-----------CGCCGGAGAACCTGACCGGCG
258 TATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCG
* * * *
4840 GT-GGGGGGAGCCCCGGCG-A---GTG-GCGG-GT-------GGCACGCGACGGGTGCTGGGTGG
323 GTGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGG
* * *
4891 CAGCCCCGCGGGGCACCCCCAGTG---CCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGA
388 CAGCCCCGCAGGGCA-CCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGA
* * ** * * * * * *
4953 GCTTAAG-GGGCATTTCATAT-CCGTTACCAGCGGACAG-GACCACGTTCGAAACAGGGTCGGTT
452 GCTTAAGATGG-ATTTC-TTTGTTGTCACCAGTGGA-GGTGCCCACGTTCGAAACAGGGACAGTT
* * * * * *
5015 TTTCTGCCGCACCTAGGGT-GGCGCAAG-CCCGCACCACCTCGGGCAGCCGGCGCGCGCCTCGCC
514 TTTCTCCCGCACCGAGGGTGGGC-CGAGACCC-CACCACCTCGGGCACCCGGTGCGCGCCACGCC
* * * * * *
5078 CACCCTCGGGCGCG-GGCGGCCGAGGCACACCCCCGGCCAGGTGCACGGTGCGCGCCCTGCCCGC
577 CACCCTCGGGTGCGCGG-GGCCGAGG--CTCGCAC--CC-GGT-C-CGG-GGGCGCCCTTCCCGC
* * *
5142 CCCC-TGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCGGTGCGCGCCTCGCCCACCC
633 CCCCGT-G-GTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCC
* * * * * * *
5206 TCGGCTGCGGGCGGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCG
696 TCGGGTGCGGCCAGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCG
* * * * * **
5271 CACGCCAT-GCGGAGC-ACGGTGCGCGCCTCGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCAC
761 CCCACC-TCGCGGGGCGCCGGTGCGCGCCTCGCCCGCCCT--CTGGTGC-GGGCGGCCGCGGCAC
* * *
5334 GCACCCGGCCAG
822 GGACCCGGGCGG
* * *
5346 GAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCGTG-GGGAG
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCATGCGGG-G
* * *
5410 CACCGGGTGCGCACAGTTGCCGGGGTACCCAACCGACCGGCGCAACGCTAAGGGAAGAACACGTT
65 CACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
* * * *
5475 CGGAGCGGGGAGGGACGGATGGCCGGGGGAGGGACTCGTTGCGCATGCGTTGG-CCTCCGC
130 TGGAGGGGGGAGGGACGGAT-G-CTGGGGAGGGACTCGTTGCGCACGC-TTGGCCCTCCGC
5535 CCGTTTGGTG
Statistics
Matches: 1719, Mismatches: 91, Indels: 80
0.91 0.05 0.04
Matches are distributed among these distances:
807 10 0.01
808 151 0.09
809 3 0.00
810 4 0.00
811 35 0.02
812 9 0.01
813 3 0.00
814 1 0.00
815 4 0.00
816 39 0.02
817 136 0.08
818 12 0.01
819 176 0.10
820 7 0.00
823 1 0.00
824 16 0.01
825 23 0.01
831 27 0.02
832 91 0.05
833 2 0.00
834 165 0.10
835 93 0.05
836 711 0.41
ACGTcount: A:0.13, C:0.34, G:0.40, T:0.13
Consensus pattern (833 bp):
GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCATGCGGGGC
ACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTT
GGAGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGA
GAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTAT
CGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGGTG
GGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGCAG
CCCCGCAGGGCACCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGCTT
AAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCTCC
CGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTCGG
GTGCGCGGGGCCGAGGCTCGCACCCGGTCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCGGC
CGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGCAC
GGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGG
TGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
Found at i:4741 original size:64 final size:64
Alignment explanation
Indices: 4662--4783 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
4652 CGTTTGGTTG
*
4662 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
4726 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
4784 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:5291 original size:102 final size:102
Alignment explanation
Indices: 5122--5308 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
5112 GGCCAGGTGC
* *
5122 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
5187 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
5224 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
5287 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
5309 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:5379 original size:64 final size:62
Alignment explanation
Indices: 5219--5394 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
5209 GCTGCGGGCG
* ** *
5219 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
5281 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
5342 CC
62 -C
5344 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
5395 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Found at i:8304 original size:403 final size:404
Alignment explanation
Indices: 7330--8500 Score: 1809
Period size: 403 Copynumber: 2.9 Consensus size: 404
7320 CAGCTGGGCA
*
7330 CGACCTGGATTTCAATCGAGAGGGACACTCTGCCGGGGCGCGACCCATGCCAGGCGCATGGAGCG
1 CGACCTGGATTT-AATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
7395 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
*
7460 CCTGCCCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
130 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
* *
7525 CAACCTACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
195 CTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
* * **
7590 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCA
260 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
* *
7655 CGGATCACTTGGACCGCGTAGGGTCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACG
325 CGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
*
7720 ATCGCAAGGCTCGCG
390 ATCGCAAGGCACGCG
7735 CGACCTGGATTTTAATCGAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
1 CGACCTGGA-TTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
7798 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
*
7863 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGA
130 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
* *
7928 CTACCGACTCGAATTCGGGAACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
195 CTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
7993 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
260 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
*
8058 CGGATCACTTGGACCGCGAAGGGTC-CCGTCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
325 CGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
8122 ATCGCAAGGCACGCG
390 ATCGCAAGGCACGCG
* * * * *
8137 CGACCTGGATCTTAACCGAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCA
1 CGACCTGGAT-TTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
* * * * *
8202 CAATCCCCGACAGACAACCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
8267 CCTGCTC-ACGGGGCATGGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGG
130 CCTGCTCGA-GGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGG
* * * *
8330 ACTACCAACTCGAATTCGGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCA
194 ACTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCA
* * ** ** * * *
8393 CGACCACGCCCCTTGTACCCCACACACGCGTGCCATGCGATCGGCAGCATACGGCGACCG-GGGA
257 CGACCACGCCCCGT-TA-CCCGCACACGCGTGCCAAACGATC-GC-GCACGCAGAGACCGACGG-
** * *
8457 CCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCATCACCGC
317 CCTCACCACGGATCACTTGGACCGCGAAGGGTCTCCATCACCGC
8501 GACAAGGTTT
Statistics
Matches: 708, Mismatches: 45, Indels: 23
0.91 0.06 0.03
Matches are distributed among these distances:
401 1 0.00
402 79 0.11
403 406 0.57
404 123 0.17
405 44 0.06
406 7 0.01
407 39 0.06
408 9 0.01
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.12
Consensus pattern (404 bp):
CGACCTGGATTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGC
AATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCC
CTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGAC
TACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGAC
CACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCAC
GGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACGA
TCGCAAGGCACGCG
Found at i:9663 original size:103 final size:101
Alignment explanation
Indices: 9511--9699 Score: 290
Period size: 103 Copynumber: 1.9 Consensus size: 101
9501 CGGCCCGGGG
9511 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
9576 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
9612 GCGCCCTTCCCGCCCCC-TGGGCTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCG
1 GCGCCCTTCCCGCCCCCGT-GG-T-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCG
* *
9676 CGCCTCGCCCGCCCTCTGGTGCGG
63 CGCCTCGCCCACCCTCGGGTGCGG
9700 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
100 1 0.01
101 19 0.24
102 1 0.01
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.41, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:9939 original size:64 final size:64
Alignment explanation
Indices: 9860--9981 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
9850 CGTTTGGTTG
*
9860 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
9924 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
9982 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:10486 original size:103 final size:101
Alignment explanation
Indices: 10350--10535 Score: 291
Period size: 103 Copynumber: 1.8 Consensus size: 101
10340 TCCGGGGGCC
*
10350 CCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTC
1 CCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTC
10415 GCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCG
66 GCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCG
* * * *
10451 CCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGCGCC
1 CCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCC
* *
10516 TCGCCCGCCCTCTGGTGCGG
64 TCGCCCACCCTCGGGTGCGG
10536 GCGGCCGCGG
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
101 14 0.18
102 4 0.05
103 58 0.76
ACGTcount: A:0.05, C:0.43, G:0.41, T:0.11
Consensus pattern (101 bp):
CCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTC
GCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCG
Found at i:10638 original size:836 final size:832
Alignment explanation
Indices: 8893--11568 Score: 3928
Period size: 836 Copynumber: 3.2 Consensus size: 832
8883 CAAAAGCCAC
* * * * * *
8893 GAGCATGGTGCGCGCCCTTCCCGCCCCC-AGGGTGGGAGCGGTCGGGGCGCGCACCATGCGGCGC
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCATGCGGGGC
** * * *
8957 AATGGGTGCGCACCCTTGCCGGGGTACCCAACCGACCGATGCAACGGTAAGGGACGAACACGTTT
66 ACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTT
* * * * * *
9022 GGAGAGGGGAGGGACAGATGCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTT-G
131 GGAGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATG-TTAG
* * * *
9086 -GAGGGGGGAGGGACGGATGCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCT
195 AGAGGGGGGAGGGCCGGATGGTT-GGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCT
9150 ATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGG
259 ATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGG
9215 TGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGC
324 TGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGC
9280 AGCCCCGCAGGGCACCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGC
389 AGCCCCGCAGGGCACCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGC
9345 TTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCT
454 TTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCT
9410 CCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTC
519 CCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTC
*
9475 GGGTGCGCGGGGCCGAGGCTCGCACCCGGCCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCG
584 GGGTGCGCGGGGCCGAGGCTCGCACCCGG-CCGGGGGCCCCCTTCCCGCCCCCGTGGTGGGGGCG
9540 GCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGC
648 GCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGC
*
9605 ACGGTGCGCGCCCTTCCCGCCCCCTGGGCTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCC
713 ACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCC
9670 GGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
778 GGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
9725 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TCGCGGGG
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCAT-GCGGGG
*
9789 CACCGGGTGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
65 CACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
*
9854 TGGTTGGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
130 TGG--AGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
9919 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
193 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
9984 TATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCG
258 TATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCG
10049 GTGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGG
323 GTGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGG
10114 CAGCCCCGCAGGGCACCCCACTGCCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGA
388 CAGCCCCGCAGGGCACCCCACTG-CCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGA
10179 GCTTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTT
452 GCTTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTT
10244 CTCCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCC
517 CTCCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCC
10309 TCGGGTGCGCGGGGCCGAGGCTCGCACCCGGTCCGGGGGCCCCCTTCCCGCCCCCGTGGTGGGGG
582 TCGGGTGCGCGGGGCCGAGGCTCGCACCCGG-CCGGGGGCCCCCTTCCCGCCCCCGTGGTGGGGG
10374 CGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGA
646 CGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGA
10439 GCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCG
711 GCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCG
10504 CCGGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
776 CCGGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
10561 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TCGCGGGG
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCAT-GCGGGG
*
10625 CACCGGGTGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
65 CACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
*
10690 TGGTTGGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
130 TGG--AGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
10755 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
193 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
* *
10820 TATCGGTGCCGAATTCGCGGTCCTCGGCACCGT-----------CGCCGGAGAACCTGACCGGCG
258 TATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCG
* * * *
10874 GT-GGGGGGAGCCCCGGCG-A---GTG-GCGG-GT-------GGCACGCGACGGGTGCTGGGTGG
323 GTGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGG
* * *
10925 CAGCCCCGCGGGGCACCCCCAGTG---CCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGA
388 CAGCCCCGCAGGGCA-CCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGA
* * ** * * * * * *
10987 GCTTAAG-GGGCATTTCATAT-CCGTTACCAGCGGACAG-GACCACGTTCGAAACAGGGTCGGTT
452 GCTTAAGATGG-ATTTC-TTTGTTGTCACCAGTGGA-GGTGCCCACGTTCGAAACAGGGACAGTT
* * * * * *
11049 TTTCTGCCGCACCTAGGGT-GGCGCAAG-CCCGCACCACCTCGGGCAGCCGGCGCGCGCCTCGCC
514 TTTCTCCCGCACCGAGGGTGGGC-CGAGACCC-CACCACCTCGGGCACCCGGTGCGCGCCACGCC
* * * * *
11112 CACCCTCGGGCGCG-GGCGGCCGAGGCACACCCCCGGCCAGGTGCACGGTGCGCGCCCTGCCCGC
577 CACCCTCGGGTGCGCGG-GGCCGAGGCTCGCACCCGGCC--G-G---GG-GC-C-CCCTTCCCGC
* * *
11176 CCCC-TGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCGGTGCGCGCCTCGCCCACCC
632 CCCCGT-G-GTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCC
* * * * * * *
11240 TCGGCTGCGGGCGGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCG
695 TCGGGTGCGGCCAGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCG
* * * * * **
11305 CACGCCAT-GCGGAGC-ACGGTGCGCGCCTCGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCAC
760 CCCACC-TCGCGGGGCGCCGGTGCGCGCCTCGCCCGCCCT--CTGGTGC-GGGCGGCCGCGGCAC
* * *
11368 GCACCCGGCCAG
821 GGACCCGGGCGG
* * *
11380 GAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCGTG-GGGAG
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCATGCGGG-G
* * *
11444 CACCGGGTGCGCACAGTTGCCGGGGTACCCAACCGACCGGCGCAACGCTAAGGGAAGAACACGTT
65 CACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
* * * *
11509 CGGAGCGGGGAGGGACGGATGGCCGGGGGAGGGACTCGTTGCGCATGCGTTGG-CCTCCGC
130 TGGAGGGGGGAGGGACGGAT-G-CTGGGGAGGGACTCGTTGCGCACGC-TTGGCCCTCCGC
11569 CCGTTTGGTG
Statistics
Matches: 1723, Mismatches: 87, Indels: 81
0.91 0.05 0.04
Matches are distributed among these distances:
807 12 0.01
808 159 0.09
809 4 0.00
810 1 0.00
811 35 0.02
812 7 0.00
813 2 0.00
814 2 0.00
815 2 0.00
816 35 0.02
817 136 0.08
818 12 0.01
819 176 0.10
820 7 0.00
823 1 0.00
824 16 0.01
825 23 0.01
832 27 0.02
833 91 0.05
834 2 0.00
835 243 0.14
836 730 0.42
ACGTcount: A:0.13, C:0.34, G:0.40, T:0.13
Consensus pattern (832 bp):
GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCATGCGGGGC
ACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTT
GGAGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGA
GAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTAT
CGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGGTG
GGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGCAG
CCCCGCAGGGCACCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGCTT
AAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCTCC
CGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTCGG
GTGCGCGGGGCCGAGGCTCGCACCCGGCCGGGGGCCCCCTTCCCGCCCCCGTGGTGGGGGCGGCC
GGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGCACG
GTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGT
GCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
Found at i:10775 original size:64 final size:64
Alignment explanation
Indices: 10696--10817 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
10686 CGTTTGGTTG
*
10696 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
10760 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
10818 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:11325 original size:102 final size:102
Alignment explanation
Indices: 11156--11342 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
11146 GGCCAGGTGC
* *
11156 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
11221 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
11258 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
11321 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
11343 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:11413 original size:64 final size:62
Alignment explanation
Indices: 11253--11428 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
11243 GCTGCGGGCG
* ** *
11253 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
11315 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
11376 CC
62 -C
11378 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
11429 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Found at i:14341 original size:403 final size:404
Alignment explanation
Indices: 13367--14537 Score: 1809
Period size: 403 Copynumber: 2.9 Consensus size: 404
13357 CAGCTGGGCA
*
13367 CGACCTGGATTTCAATCGAGAGGGACACTCTGCCGGGGCGCGACCCATGCCAGGCGCATGGAGCG
1 CGACCTGGATTT-AATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
13432 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
*
13497 CCTGCCCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
130 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
* *
13562 CAACCTACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
195 CTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
* * **
13627 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCA
260 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
* *
13692 CGGATCACTTGGACCGCGTAGGGTCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACG
325 CGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
*
13757 ATCGCAAGGCTCGCG
390 ATCGCAAGGCACGCG
13772 CGACCTGGATTTTAATCGAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
1 CGACCTGGA-TTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
13835 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
*
13900 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGA
130 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
* *
13965 CTACCGACTCGAATTCGGGAACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
195 CTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
14030 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
260 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
*
14095 CGGATCACTTGGACCGCGAAGGGTC-CCGTCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
325 CGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
14159 ATCGCAAGGCACGCG
390 ATCGCAAGGCACGCG
* * * * *
14174 CGACCTGGATCTTAACCGAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCA
1 CGACCTGGAT-TTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
* * * * *
14239 CAATCCCCGACAGACAACCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
14304 CCTGCTC-ACGGGGCATGGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGG
130 CCTGCTCGA-GGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGG
* * * *
14367 ACTACCAACTCGAATTCGGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCA
194 ACTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCA
* * ** ** * * *
14430 CGACCACGCCCCTTGTACCCCACACACGCGTGCCATGCGATCGGCAGCATACGGCGACCG-GGGA
257 CGACCACGCCCCGT-TA-CCCGCACACGCGTGCCAAACGATC-GC-GCACGCAGAGACCGACGG-
** * *
14494 CCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCATCACCGC
317 CCTCACCACGGATCACTTGGACCGCGAAGGGTCTCCATCACCGC
14538 GACAAGGTTT
Statistics
Matches: 708, Mismatches: 45, Indels: 23
0.91 0.06 0.03
Matches are distributed among these distances:
401 1 0.00
402 79 0.11
403 406 0.57
404 123 0.17
405 44 0.06
406 7 0.01
407 39 0.06
408 9 0.01
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.12
Consensus pattern (404 bp):
CGACCTGGATTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGC
AATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCC
CTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGAC
TACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGAC
CACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCAC
GGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACGA
TCGCAAGGCACGCG
Found at i:15700 original size:103 final size:101
Alignment explanation
Indices: 15548--15736 Score: 290
Period size: 103 Copynumber: 1.9 Consensus size: 101
15538 CGGCCCGGGG
15548 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
15613 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
15649 GCGCCCTTCCCGCCCCC-TGGGCTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCG
1 GCGCCCTTCCCGCCCCCGT-GG-T-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCG
* *
15713 CGCCTCGCCCGCCCTCTGGTGCGG
63 CGCCTCGCCCACCCTCGGGTGCGG
15737 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
100 1 0.01
101 19 0.24
102 1 0.01
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.41, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:15976 original size:64 final size:64
Alignment explanation
Indices: 15897--16018 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
15887 CGTTTGGTTG
*
15897 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
15961 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
16019 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:16523 original size:103 final size:101
Alignment explanation
Indices: 16387--16572 Score: 291
Period size: 103 Copynumber: 1.8 Consensus size: 101
16377 TCCGGGGGCC
*
16387 CCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTC
1 CCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTC
16452 GCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCG
66 GCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCG
* * * *
16488 CCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGCGCC
1 CCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCC
* *
16553 TCGCCCGCCCTCTGGTGCGG
64 TCGCCCACCCTCGGGTGCGG
16573 GCGGCCGCGG
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
101 14 0.18
102 4 0.05
103 58 0.76
ACGTcount: A:0.05, C:0.43, G:0.41, T:0.11
Consensus pattern (101 bp):
CCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTC
GCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCG
Found at i:16675 original size:836 final size:832
Alignment explanation
Indices: 14930--17605 Score: 3928
Period size: 836 Copynumber: 3.2 Consensus size: 832
14920 CAAAAGCCAC
* * * * * *
14930 GAGCATGGTGCGCGCCCTTCCCGCCCCC-AGGGTGGGAGCGGTCGGGGCGCGCACCATGCGGCGC
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCATGCGGGGC
** * * *
14994 AATGGGTGCGCACCCTTGCCGGGGTACCCAACCGACCGATGCAACGGTAAGGGACGAACACGTTT
66 ACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTT
* * * * * *
15059 GGAGAGGGGAGGGACAGATGCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTT-G
131 GGAGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATG-TTAG
* * * *
15123 -GAGGGGGGAGGGACGGATGCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCT
195 AGAGGGGGGAGGGCCGGATGGTT-GGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCT
15187 ATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGG
259 ATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGG
15252 TGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGC
324 TGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGC
15317 AGCCCCGCAGGGCACCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGC
389 AGCCCCGCAGGGCACCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGC
15382 TTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCT
454 TTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCT
15447 CCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTC
519 CCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTC
*
15512 GGGTGCGCGGGGCCGAGGCTCGCACCCGGCCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCG
584 GGGTGCGCGGGGCCGAGGCTCGCACCCGG-CCGGGGGCCCCCTTCCCGCCCCCGTGGTGGGGGCG
15577 GCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGC
648 GCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGC
*
15642 ACGGTGCGCGCCCTTCCCGCCCCCTGGGCTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCC
713 ACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCC
15707 GGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
778 GGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
15762 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TCGCGGGG
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCAT-GCGGGG
*
15826 CACCGGGTGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
65 CACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
*
15891 TGGTTGGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
130 TGG--AGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
15956 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
193 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
16021 TATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCG
258 TATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCG
16086 GTGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGG
323 GTGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGG
16151 CAGCCCCGCAGGGCACCCCACTGCCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGA
388 CAGCCCCGCAGGGCACCCCACTG-CCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGA
16216 GCTTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTT
452 GCTTAAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTT
16281 CTCCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCC
517 CTCCCGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCC
16346 TCGGGTGCGCGGGGCCGAGGCTCGCACCCGGTCCGGGGGCCCCCTTCCCGCCCCCGTGGTGGGGG
582 TCGGGTGCGCGGGGCCGAGGCTCGCACCCGG-CCGGGGGCCCCCTTCCCGCCCCCGTGGTGGGGG
16411 CGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGA
646 CGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGA
16476 GCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCG
711 GCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCG
16541 CCGGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
776 CCGGTGCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
16598 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TCGCGGGG
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCAT-GCGGGG
*
16662 CACCGGGTGCGCACCGTTGTCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
65 CACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
*
16727 TGGTTGGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
130 TGG--AGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTT
16792 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
193 AGAGAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGC
* *
16857 TATCGGTGCCGAATTCGCGGTCCTCGGCACCGT-----------CGCCGGAGAACCTGACCGGCG
258 TATCGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCG
* * * *
16911 GT-GGGGGGAGCCCCGGCG-A---GTG-GCGG-GT-------GGCACGCGACGGGTGCTGGGTGG
323 GTGGGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGG
* * *
16962 CAGCCCCGCGGGGCACCCCCAGTG---CCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGA
388 CAGCCCCGCAGGGCA-CCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGA
* * ** * * * * * *
17024 GCTTAAG-GGGCATTTCATAT-CCGTTACCAGCGGACAG-GACCACGTTCGAAACAGGGTCGGTT
452 GCTTAAGATGG-ATTTC-TTTGTTGTCACCAGTGGA-GGTGCCCACGTTCGAAACAGGGACAGTT
* * * * * *
17086 TTTCTGCCGCACCTAGGGT-GGCGCAAG-CCCGCACCACCTCGGGCAGCCGGCGCGCGCCTCGCC
514 TTTCTCCCGCACCGAGGGTGGGC-CGAGACCC-CACCACCTCGGGCACCCGGTGCGCGCCACGCC
* * * * *
17149 CACCCTCGGGCGCG-GGCGGCCGAGGCACACCCCCGGCCAGGTGCACGGTGCGCGCCCTGCCCGC
577 CACCCTCGGGTGCGCGG-GGCCGAGGCTCGCACCCGGCC--G-G---GG-GC-C-CCCTTCCCGC
* * *
17213 CCCC-TGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCGGTGCGCGCCTCGCCCACCC
632 CCCCGT-G-GTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCC
* * * * * * *
17277 TCGGCTGCGGGCGGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCG
695 TCGGGTGCGGCCAGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCG
* * * * * **
17342 CACGCCAT-GCGGAGC-ACGGTGCGCGCCTCGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCAC
760 CCCACC-TCGCGGGGCGCCGGTGCGCGCCTCGCCCGCCCT--CTGGTGC-GGGCGGCCGCGGCAC
* * *
17405 GCACCCGGCCAG
821 GGACCCGGGCGG
* * *
17417 GAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCGTG-GGGAG
1 GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCATGCGGG-G
* * *
17481 CACCGGGTGCGCACAGTTGCCGGGGTACCCAACCGACCGGCGCAACGCTAAGGGAAGAACACGTT
65 CACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTT
* * * *
17546 CGGAGCGGGGAGGGACGGATGGCCGGGGGAGGGACTCGTTGCGCATGCGTTGG-CCTCCGC
130 TGGAGGGGGGAGGGACGGAT-G-CTGGGGAGGGACTCGTTGCGCACGC-TTGGCCCTCCGC
17606 CCGTTTGGTG
Statistics
Matches: 1723, Mismatches: 87, Indels: 81
0.91 0.05 0.04
Matches are distributed among these distances:
807 12 0.01
808 159 0.09
809 4 0.00
810 1 0.00
811 35 0.02
812 7 0.00
813 2 0.00
814 2 0.00
815 2 0.00
816 35 0.02
817 136 0.08
818 12 0.01
819 176 0.10
820 7 0.00
823 1 0.00
824 16 0.01
825 23 0.01
832 27 0.02
833 91 0.05
834 2 0.00
835 243 0.14
836 730 0.42
ACGTcount: A:0.13, C:0.34, G:0.40, T:0.13
Consensus pattern (832 bp):
GAGCACGGGGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCATGCGGGGC
ACCGGGTGCGCACCGTTGCCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTT
GGAGGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGA
GAGGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTAT
CGGTGCCGAATTCGGGGTCGTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGGTG
GGGGGGAGCCCCGGCGAATGGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGCAG
CCCCGCAGGGCACCCCACTGCCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGCTT
AAGATGGATTTCTTTGTTGTCACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCTCC
CGCACCGAGGGTGGGCCGAGACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTCGG
GTGCGCGGGGCCGAGGCTCGCACCCGGCCGGGGGCCCCCTTCCCGCCCCCGTGGTGGGGGCGGCC
GGGGCGCACACCACGCGGAGCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGCACG
GTGCGCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGT
GCGCGCCTCGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGG
Found at i:16812 original size:64 final size:64
Alignment explanation
Indices: 16733--16854 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
16723 CGTTTGGTTG
*
16733 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
16797 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
16855 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:17362 original size:102 final size:102
Alignment explanation
Indices: 17193--17379 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
17183 GGCCAGGTGC
* *
17193 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
17258 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
17295 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
17358 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
17380 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:17450 original size:64 final size:62
Alignment explanation
Indices: 17290--17465 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
17280 GCTGCGGGCG
* ** *
17290 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
17352 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
17413 CC
62 -C
17415 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
17466 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Found at i:20410 original size:404 final size:404
Alignment explanation
Indices: 19409--20580 Score: 1802
Period size: 403 Copynumber: 2.9 Consensus size: 404
19399 CAGCTGGGCA
*
19409 CGACCTGGATTTCAATCGAGAGGGACACTCTGCCGGGGCGCGACCCATGCCAGGCGCATGGAGCG
1 CGACCTGGATTT-AATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
19474 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
*
19539 CCTGCCCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
130 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
* *
19604 CAACCTACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
195 CTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
* * **
19669 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCA
260 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
* *
19734 CGGATCACTTGGACCGCGTAGGGTCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACG
325 CGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
*
19799 ATCGCAAGGCTCGCG
390 ATCGCAAGGCACGCG
19814 CGACCTGGATTTTAATCGAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
1 CGACCTGGA-TTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
19877 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
*
19942 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGA
130 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGA
* *
20007 CTACCGACTCGAATTCGGGAACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
195 CTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
20072 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
260 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
*
20137 CGGATCACTTGGACCGCGAAGGGTC-CCGTCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
325 CGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
20201 ATCGCAAGGCACGCG
390 ATCGCAAGGCACGCG
* * * * *
20216 CGACCTGGATCTTAACCGAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCA
1 CGACCTGGAT-TTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
* * * * *
20281 CAATCCCCGACAGACAACCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
20346 CCTGCTC-ACGGGGCATGGCCAGGCCAAGCCC-CACCTTGCAGCTTCTGCCCACGCCACAACCGG
130 CCTGCTCGA-GGGGCATGGCCAGGCCAAGCCCTCACC-TGCAGCTTCTGCCCACGCCACAACCGG
* * * *
20409 GACTACCAACTCGAATTCGGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGC
193 GACTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGC
* * ** ** * * *
20472 ACGACCACGCCCCTTGTACCCCACACACGCGTGCCATGCGATCGGCAGCATACGGCGACCG-GGG
256 ACGACCACGCCCCGT-TA-CCCGCACACGCGTGCCAAACGATC-GC-GCACGCAGAGACCGACGG
** * *
20536 ACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCATCACCGC
317 -CCTCACCACGGATCACTTGGACCGCGAAGGGTCTCCATCACCGC
20581 GACAAGGTTT
Statistics
Matches: 708, Mismatches: 45, Indels: 24
0.91 0.06 0.03
Matches are distributed among these distances:
401 1 0.00
402 75 0.11
403 319 0.45
404 212 0.30
405 25 0.04
406 24 0.03
407 4 0.01
408 39 0.06
409 9 0.01
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.12
Consensus pattern (404 bp):
CGACCTGGATTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCGC
AATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCC
CTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCTTCTGCCCACGCCACAACCGGGAC
TACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGAC
CACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCAC
GGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACGA
TCGCAAGGCACGCG
Found at i:21742 original size:103 final size:101
Alignment explanation
Indices: 21590--21778 Score: 288
Period size: 103 Copynumber: 1.9 Consensus size: 101
21580 CGGCCCGGGG
*
21590 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGCCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGCCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
21655 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
** * * *
21691 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGCCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
21756 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
21779 GCGGCCGCGG
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 57 0.73
ACGTcount: A:0.05, C:0.43, G:0.41, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGCCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:22018 original size:64 final size:64
Alignment explanation
Indices: 21939--22060 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
21929 CGTTTGGTTG
*
21939 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
22003 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
22061 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:22567 original size:102 final size:102
Alignment explanation
Indices: 22398--22584 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
22388 GGCCAGGTGC
* *
22398 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGAGCACCG
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
22463 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
66 GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
22500 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCA-
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGT-GGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
22563 CGGTGCGCGCCTCGCCCACCCT
64 CGGTGCGCGCCTCGCCCACCCT
22585 GGGGGGTGCG
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTGGGGGCGGGCGGGGCGCACACCATGCGGAGCACCG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Found at i:22655 original size:64 final size:62
Alignment explanation
Indices: 22495--22670 Score: 168
Period size: 64 Copynumber: 2.8 Consensus size: 62
22485 GCTGCGGGCG
* ** *
22495 GGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGT-CGGGGGCGG-GCGGGGCGCACGCCATGC
1 GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGC-GGGGCGGCGCGGCACGCACGCCAGGC
*
22557 GGAGCACGGTGCGCG-CCTCGCC-CACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCAC-CC-GG
1 GGAGCACGGTGCGCGCCCTC-CCGCCCCCT--GGGGTGCGGGGCGG-CGCGGCACGCACGCCAGG
22618 CC
62 -C
22620 AGGAGCACGGTGCGCGCCCTTCCCGCCCCCTGGGGTG-GGGGCGGTCGCGGC
1 -GGAGCACGGTGCGCGCCC-TCCCGCCCCCTGGGGTGCGGGGCGG-CGCGGC
22671 GCACACCGTG
Statistics
Matches: 96, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
60 7 0.07
61 4 0.04
62 27 0.28
63 17 0.18
64 30 0.31
65 4 0.04
66 7 0.07
ACGTcount: A:0.08, C:0.39, G:0.45, T:0.09
Consensus pattern (62 bp):
GGAGCACGGTGCGCGCCCTCCCGCCCCCTGGGGTGCGGGGCGGCGCGGCACGCACGCCAGGC
Found at i:22737 original size:818 final size:811
Alignment explanation
Indices: 20928--22834 Score: 2321
Period size: 818 Copynumber: 2.3 Consensus size: 811
20918 GCGCGCGCAA
* * *** * *
20928 CGCCCGCCCTCGGGTGCGGACGGCCGCGGCACCCGCA-AAAGCCACGAGCATGGTGCGCGCCCTT
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCA--CGCACCCGGCCAGGAGCACGGTGCGCGCCCTT
* * * * ** *
20992 CCCGCCCCC-AGGGTGGGAGCGGTCGGGGCGCGCACCATGCGGCGCAATGGGTGCGCACCCTTGC
64 CCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TG-GGGGCACCGGGTGCGCACCGTTGC
* * *
21056 CGGGGTACCCAACCGACCGATGCAACGGTAAGGGACGAACACGTTTGGAGAGGGGAGGGACAGAT
127 CGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGAT
* * *
21121 GCCGGGGAGGGACTCGTTGCACACGCTCGGCCCTACGCATGCTTGGAGGGGGGAGGGACGGATGC
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGC
*
21186 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGGGGTC
257 TTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTC
*
21251 GTCGGCACCGTCGCCGGAGCACCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAT
322 CTCGGCACCGT----------CCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAA-
* *
21316 GGGGGAGGGGTGTGGGCGACGGCACGCGATGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
376 -GGGGAGCGGTGT----G--GGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACT
* * * **
21381 GCCCCCCCCCTTGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGATGGATTTCTTTGTTGT
434 G-CCCCCCCCTAGGTTGCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGT
* * * *
21446 CACCAGTGGAGGTGCCCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCGAG
498 CACCAGCGGAAGTGACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAG
* * * *
21511 ACCCCACCACCTCGGGCACCCGGTGCGCGCCACGCCCACCCTCGGGTGCGCGGGGCCGAGGCTCG
563 ACCCCACCACCTCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACA
* *
21576 CACCCGGCCCGGGGGCGCCCTTCCCGCCCCCGTGGTGGGGGCGCCCGGGGCGCACACCACGCGGA
628 CACCCGGCCCGGGCGCGCCCTGCCCGCCCCCGTGGTGGGGGCGCCCGGGGCGCACACCACGCGGA
* * * *
21641 GCGCCGGTGCGCGCCTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGCGCGCCCTTCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
* * * * *
21706 CCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACCTCGCGGAGCGACGGTGCGCGCCT
* * * * * *
21760 CGCCCGCCCTCTGGTGCGGGCGGCCGCGGCACGGACCCGGGCGGGAGCACGGGGCGCGCCCTTCC
1 CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
*
21825 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTCGCGGGGCACCGGGTGCGCACCGTTGTCG
66 CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCT-G-GGGGCACCGGGTGCGCACCGTTGCCG
* *
21890 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGTTGGGGGGGAGGGACGGAT
129 GGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGG--AGAGGGGAGGGACGGAT
* *
21955 GCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATG-TTAGAGAGGGGGGAGGGCCGGAT
192 GCCGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTT-G-GAGGGGGGAGGGACGGAT
* * *
22019 GGTT-GGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
255 GCTTGGGGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGG
*
22083 TCCTCGGCACCGT-CGCCGGAGAACCTGACCGGCGGT-GGGGGGAGCCCCGGCG-A-GTG-GCGG
320 TCCTCGGCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGG
* * *
22143 -GT-GGCACGCGACGGGTGCTGGGTGGCAGCCCCGCGGGGCACCCCCAGTG-CCCCCCCTAGGTT
385 TGTGGGCACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCA-CCCCACTGCCCCCCCCTAGGTT
*
22205 GCTCAAGTATCACACCCCCTATAGAGCTTAAG-GGGCATTTCATAT-CCGTTACCAGCGGACAG-
449 GCTCAAGTATCACACCCCCTATAGAGCTTAAGAGGG-ATTTC-TATGCCGTCACCAGCGGA-AGT
* * * *
22267 GACCACGTTCGAAACAGGGTCGGTTTTTCTGCCGCACCTAGGGT-GGCGCAAG-CCCGCACCACC
511 GACCACGTTCGAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGC-CAAGACCC-CACCACC
* * *
22330 TCGGGCAGCCGGCGCGCGCCTCGCCCACCCTC-GGCGCG-GGCGGCCGAGGCACACCCCCGGCCA
574 TCGGGCACCCGGCGCGCGCCACGCCCACCCTCGGGCGCGCGG-GGCCGAGGCACACACCCGG-C-
** *
22393 GGTGCACGGTGCGCGCCCTGCCCGCCCCC-TGGTGTGGGGGCGGTCGGGGCGCACACCATGCGGA
636 ----C-CGG-GCGCGCCCTGCCCGCCCCCGT-G-GTGGGGGCGCCCGGGGCGCACACCACGCGGA
* *
22457 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGAACGGTGCGCGCCCATCCCGCCC
693 GCACCGGTGCGCGCCTCGCCCACCCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCC
*
22522 CCTGGGGTCGGGGGCGGGCGGGGCGCACGCCAT-GCGGAGC-ACGGTGCGCGCCT
758 CCTGGGGTCGGGGGCGGGCGGGGCGCACACC-TCGCGGAGCGACGGTGCGCGCCT
*
22575 CGCCCACCCTGGGGGGTGCGGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
1 CGCCCACCCT--CGGGTGC-GGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCT
* *
22640 TCCCGCCCCCTGGGGTGGGGGCGGTCGCGGCGCACACCGTGGGGAGCACCGGGTGCGCACAGTTG
63 TCCCGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACC-TGGGG-GCACCGGGTGCGCACCGTTG
* * * *
22705 CCGGGGTACCCAACCGACCGGCGCAACGCTAAGGGAAGAACACGTTCGGAGCGGGGAGGGACGGA
126 CCGGGGTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGA
* ** * * *
22770 TGGCCGGGGGAGGGACTCGTTGCGCATGCGTTGG-CCTCCGCCCGTTTGGTGTGGGGAGGGACGG
191 T-GCC-GGGGAGGGACTCGTTGCGCACGC-TTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGG
22834 A
253 A
22835 CGGCCTATGT
Statistics
Matches: 941, Mismatches: 100, Indels: 83
0.84 0.09 0.07
Matches are distributed among these distances:
806 2 0.00
807 29 0.03
808 138 0.15
809 38 0.04
810 7 0.01
813 1 0.00
814 4 0.00
815 39 0.04
816 137 0.15
817 28 0.03
818 176 0.19
819 7 0.01
821 1 0.00
822 16 0.02
823 23 0.02
830 3 0.00
831 29 0.03
832 120 0.13
833 2 0.00
834 121 0.13
835 20 0.02
ACGTcount: A:0.13, C:0.34, G:0.40, T:0.13
Consensus pattern (811 bp):
CGCCCACCCTCGGGTGCGGGCGGCCGCGGCACGCACCCGGCCAGGAGCACGGTGCGCGCCCTTCC
CGCCCCCTGGGGTGGGGGCGGTCGGGGCGCACACCTGGGGGCACCGGGTGCGCACCGTTGCCGGG
GTACCCAACCGACCGACGCAACGCTAAGGGACGAACACGTTTGGAGAGGGGAGGGACGGATGCCG
GGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGCTTGGAGGGGGGAGGGACGGATGCTTGG
GGAGGGACTCGTTGCACACGCGTGGGCCTCCGCATGTGCTATCGGTGCCGAATTCGCGGTCCTCG
GCACCGTCCGCCGGAGAACCTGACCGGCGGTGGGGGGGAGCCCCGGCGAAGGGGAGCGGTGTGGG
CACGCGACGGGTGCAGGGTGGCAGCCCCGCAGGGCACCCCACTGCCCCCCCCTAGGTTGCTCAAG
TATCACACCCCCTATAGAGCTTAAGAGGGATTTCTATGCCGTCACCAGCGGAAGTGACCACGTTC
GAAACAGGGACAGTTTTTCTCCCGCACCGAGGGTGGGCCAAGACCCCACCACCTCGGGCACCCGG
CGCGCGCCACGCCCACCCTCGGGCGCGCGGGGCCGAGGCACACACCCGGCCCGGGCGCGCCCTGC
CCGCCCCCGTGGTGGGGGCGCCCGGGGCGCACACCACGCGGAGCACCGGTGCGCGCCTCGCCCAC
CCTCGGCTGCGGCCAGGAGAACGGTGCGCGCCCATCCCGCCCCCTGGGGTCGGGGGCGGGCGGGG
CGCACACCTCGCGGAGCGACGGTGCGCGCCT
Found at i:29478 original size:418 final size:404
Alignment explanation
Indices: 28682--31072 Score: 1473
Period size: 403 Copynumber: 5.8 Consensus size: 404
28672 CACTCAGCCC
* *
28682 GGGCGCGATCCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAG
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
*
28747 CGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
28812 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
131 CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
* * *
28877 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCGTTACCCACACACGCGTGCCAAGCG
196 CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
* * * * *
28942 ATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGCCTTCATCACC
261 ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
*
29007 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATTTTAATCGA
326 GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
29072 GAGGGACACTGCCG
391 GAGGGACACTGCCG
**
29086 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
* * *
29150 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCTTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
* * * *
29214 ACCTGCAGCTTCTGCGC-GCGCCACAACCGGGACCCTCTACTCGATTAGGGGGCTTGGTCCTG-G
130 ACCTGCAGCATCTGC-CTGCACCACAACCGGGACCATCCACTCGA--A-------T--T-C-GAG
* * ** * * * * * *
29277 AGTCGTTGGCGGCATCGGCGCAGGTGCGAGCTTAACCTTCCGGCAGGACCACGCCTCATCTCCCC
181 A-AC-TTGGCAGCATCACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCAT-TACCC
* * *
29342 ACACACGCGGGCCAACCGATCGAGCACATGGTGACCGGGGACCTCGCCACGGATCACTTGGACCG
243 ACACACGCGGGCCAACCGATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCG
29407 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCAT-GCA
308 CGAAGGGCCTCCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGC-TCGCA
* * ** **
29471 TGACCTGGATTTCACA-CGAG-GCAACTGTGGCCG
372 CGACCTGGATTTTA-ATCGAGAGGGACACT-GCCG
* * * * ** ** * * * ** *
29504 GGGCTC-ACACCAAGCCAGGCACATGGTGCAAGACCCTCCCC-ACCCCTCGGA-GGGAAGGGTGG
1 GGGCGCGA-ACCATGCCAGGCGCATGGAGC--G-CAATCCCCGACGGC-C-AACCGGCAGGACGA
* **** * * * * * * ****
29566 GCAGGGCG-CGCACCATG-AAGAGCACACG-G-CGCGCGCCCTGATGGGTAGGGGGCCAA-AAAT
60 ACCCACCGTTGC-CGATGCAAGGGC-CACGAGAC-TGC-CCCTGCT-CG-A-GGGG-CAACGGCC
* * * ** * *** * ** ** ** ** **
29626 ATGG--AATTGTCTGAAAGTG-GGACA-CTTTTTG-ACAAGTACCATTAGAATATATA-TATATA
117 A-GGCCAA--GCCCGCACCTGCAG-CATCTGCCTGCACCACAACC--GGGACCATCCACTCGA-A
** ** * * * * * ** *
29685 TAT-GTA-AATCCAAGGGGCCA-CAATCGATGGGAGGACCACG-C-AAGGC-ACCGG---GTGCG
175 T-TCG-AGAA--C--TTGG-CAGC-ATC-ACCGCAGGAGCAAGCCTAA-CCTTCCGGCACGACCA
* * * ** * **
29741 CG-CCC--TGCCCACACCCGGATGGGTGCGGACGCGGCA-CGCAGAATCCCAG-GCACCGGGTGC
230 CGCCCCATTACCCACACAC-G--CGG-GCCAAC-C-G-ATCG-AGCA-CATAGCG-ACC--G-G-
* * * * * * *
29801 GCGACCTGCCCTTCGCGGAATAAGCCATGAGGGCC-CG-AGGGCCTCGC--CA-CGGATCGCTTG
281 G-GACCT-CAC--CACGG-ATCA--C-T-TGGACCGCGAAGGGCCTC-CATCACCGCA--GCTGG
* *** * * * *
29861 G-A-CC-G---CGGAGGGTCCCCGTCACCGC-A-GCTGGGCACGACCTGGATTTCAATCGAGAGG
334 GCATCCGGTCACCGA-AAACCACG--ATCGCAAGGCT-CGCACGACCTGGATTTTAATCGAGAGG
29918 GACACTCTGCCG
395 GACA--CTGCCG
* * * * * *
29930 GGGCGCGACCCGTGCGAGGAACAGGAACATCGAGCACAATCCCCGACAGG-CAACCGGCAAGACG
1 GGGCGCGAACCATGCCAGG--C--G--CATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACG
* * * *
29994 AGCCCACCGTTGCCGATGCAAGGGCCGCGAGACTGCCCCTGCTCGAGGGGCAATGGCCAGGCCAC
59 AACCCACCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAA
* * * * *
30059 GCCCTCACCTGCAGCATCTGCCAGCGCCACAACCGGGA-CAACCTACTCGAATTCGGGAACTTGG
124 GCCCGCACCTGCAGCATCTGCCTGCACCACAACCGGGACCATCC-ACTCGAATTCGAGAACTTGG
* * * ** * * *
30123 CAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGT
188 CAGCATCACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGG
* * * * * *
30188 GCCAAACGATCGCGCACGTAGCGACCGGGGGCCTCACCACGGATCACTTGGACCGCGTAGGGTCT
253 GCCAACCGATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCT
*
30253 CCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCGCGACCTGGATT
318 CCATCACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATT
30318 TTAATCGAGAGGGACACTGCCG
383 TTAATCGAGAGGGACACTGCCG
**
30340 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACAGG-CAACCGGCAGGACGTGCCCA
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGAC-GGCCAACCGGCAGGACGAACCCA
* *
30404 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTC
65 CCGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGC
* ** * * *
30468 ACCTGCAGCCTCTGCCCACGCCACAACCGGGACTA-CCGACTCGAATTCGGGAACTTGGCAGCAT
130 ACCTGCAGCATCTGCCTGCACCACAACCGGGACCATCC-ACTCGAATTCGAGAACTTGGCAGCAT
* * ** * * *
30532 CACCGCAGGTGCGAGCCTTGCCTTCCGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAC
194 CACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAAC
* ** * * * *
30597 CGATCGCGCACGCAGAGACCGACGG-CCTCACCACGGATCACTTGGACCGCGAAGGGTC-CCGTC
259 CGATCGAGCACATAGCGACCG-GGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATC
* * * * *
30660 ACCGCAGCTGGGCATCCGGCCACCGAAAACCACGATCGCAAGGCACGCGCGACCTGGATCTTAAC
323 ACCGCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAAT
30725 CGAGAGGGACACTCTGCCG
388 CGAGAGGGACA--CTGCCG
* * * * * * * *
30744 GGGCGCGATCAATGCCAGGCGCATCGAGCACAATCCCCGACAGACAACCGGCGGGACGAGCCCAC
1 GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
* * *
30809 CGTTGCCGAAGCAAGGGCCGCGAGACTGCCCCTGCTC-ACGGGGC-ATGGCCAGGCCAAGCCC-C
66 CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGA-GGGGCAACGGCCAGGCCAAGCCCGC
* ** * * * *
30871 ACCTGCAGCTTCTGCCCACGCCACAACCGGGACTA-CCAACTCGAATTCGGGAACTTGGCAGAAT
130 ACCTGCAGCATCTGCCTGCACCACAACCGGGACCATCC-ACTCGAATTCGAGAACTTGGCAGCAT
* * * * * * * * *
30935 CAGCGCAGGTGGAAGCTTAACCCTACGGCACGACCACGCCCCTTGTGCCCCACACACGCGTGCCA
194 CACCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCAT-T-ACCCACACACGCGGGCCA
** ** * * *
31000 TGCGATCG-GCAGCATACGGCGACCGGGGACCTTGCCACGGATCACCTGGACCGCGCAGGGTCTC
257 ACCGATCGAGCA-CATA--GCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTC
31064 CATCACCGC
319 CATCACCGC
31073 GACAAGGTTT
Statistics
Matches: 1531, Mismatches: 306, Indels: 296
0.72 0.14 0.14
Matches are distributed among these distances:
402 76 0.05
403 343 0.22
404 310 0.20
405 27 0.02
406 7 0.00
407 39 0.03
408 23 0.02
409 12 0.01
410 31 0.02
411 9 0.01
412 34 0.02
413 18 0.01
414 10 0.01
415 8 0.01
416 18 0.01
417 62 0.04
418 169 0.11
419 17 0.01
420 25 0.02
421 40 0.03
422 12 0.01
423 14 0.01
424 41 0.03
425 43 0.03
426 50 0.03
427 20 0.01
428 17 0.01
429 33 0.02
430 16 0.01
431 1 0.00
432 6 0.00
ACGTcount: A:0.22, C:0.36, G:0.30, T:0.13
Consensus pattern (404 bp):
GGGCGCGAACCATGCCAGGCGCATGGAGCGCAATCCCCGACGGCCAACCGGCAGGACGAACCCAC
CGTTGCCGATGCAAGGGCCACGAGACTGCCCCTGCTCGAGGGGCAACGGCCAGGCCAAGCCCGCA
CCTGCAGCATCTGCCTGCACCACAACCGGGACCATCCACTCGAATTCGAGAACTTGGCAGCATCA
CCGCAGGAGCAAGCCTAACCTTCCGGCACGACCACGCCCCATTACCCACACACGCGGGCCAACCG
ATCGAGCACATAGCGACCGGGGACCTCACCACGGATCACTTGGACCGCGAAGGGCCTCCATCACC
GCAGCTGGGCATCCGGTCACCGAAAACCACGATCGCAAGGCTCGCACGACCTGGATTTTAATCGA
GAGGGACACTGCCG
Found at i:30876 original size:403 final size:404
Alignment explanation
Indices: 29895--31072 Score: 1690
Period size: 403 Copynumber: 2.9 Consensus size: 404
29885 CAGCTGGGCA
* * *
29895 CGACCTGGATTTCAATCGAGAGGGACACTCTGCCGGGGCGCGACCCGTGCGAGGAACAGGAACAT
1 CGACCTGGATTT-AATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGG--C--G--CAT
*
29960 CGAGCACAATCCCCGACAGGCAACCGGCAAGACGAGCCCACCGTTGCCGATGCAAGGGCCGCGAG
59 CGAGCACAATCCCCGACAGGCAACCGGCAGGACGAGCCCACCGTTGCCGATGCAAGGGCCGCGAG
*
30025 ACTGCCCCTGCTCGAGGGGCAATGGCCAGGCCACGCCCTCACCTGCAGCATCTG-CCAGCGCCAC
124 ACTGCCCCTGCTCGAGGGGC-ATGGCCAGGCCAAGCCCTCACCTGCAGCATCTGCCCA-CGCCAC
* *
30089 AACCGGGACAACCTACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTC
187 AACCGGGACTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTC
* * **
30154 CGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGTAGCGACCGGGGG
252 CGGCACGACCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGG
* *
30219 CCTCACCACGGATCACTTGGACCGCGTAGGGTCTCCATCACCGCAGCTGGGCATCCGGTCACCGA
317 CCTCACCACGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGA
*
30284 AAACCACGATCGCAAGGCTCGCG
382 AAACCACGATCGCAAGGCACGCG
* *
30307 CGACCTGGATTTTAATCGAGAGGGACA--CTGCCGGGGCGCGAACCATGCCAGGCGCATGGAGCG
1 CGACCTGGA-TTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATCGAGCA
* *
30370 CAATCCCCGACAGGCAACCGGCAGGACGTGCCCACCGTTGCCGATGCAAGGGCCACGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGAGCCCACCGTTGCCGATGCAAGGGCCGCGAGACTGCC
*
30435 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCCTCTGCCCACGCCACAACCGGGA
130 CCTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCATCTGCCCACGCCACAACCGGGA
* *
30500 CTACCGACTCGAATTCGGGAACTTGGCAGCATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
195 CTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGA
*
30565 CCACGCCCCGTTACCCGCACACGCGTGCCAACCGATCGCGCACGCAGAGACCGACGGCCTCACCA
260 CCACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCA
*
30630 CGGATCACTTGGACCGCGAAGGGTC-CCGTCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
325 CGGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACG
30694 ATCGCAAGGCACGCG
390 ATCGCAAGGCACGCG
* * *
30709 CGACCTGGATCTTAACCGAGAGGGACACTCTGCCGGGGCGCGATCAATGCCAGGCGCATCGAGCA
1 CGACCTGGAT-TTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATCGAGCA
* * *
30774 CAATCCCCGACAGACAACCGGCGGGACGAGCCCACCGTTGCCGAAGCAAGGGCCGCGAGACTGCC
65 CAATCCCCGACAGGCAACCGGCAGGACGAGCCCACCGTTGCCGATGCAAGGGCCGCGAGACTGCC
*
30839 CCTGCTC-ACGGGGCATGGCCAGGCCAAGCCC-CACCTGCAGCTTCTGCCCACGCCACAACCGGG
130 CCTGCTCGA-GGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCATCTGCCCACGCCACAACCGGG
* * * *
30902 ACTACCAACTCGAATTCGGGAACTTGGCAGAATCAGCGCAGGTG-GAAG-CTTAACCCTACGGCA
194 ACTACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCG-AGCCTT-GCCTTCCGGCA
** * ** ** * * *
30965 CGACCACGCCCCTTGTGCCCCACACACGCGTGCCATGCGATCGGCAGCATACGGCGACCG-GGGA
257 CGACCACGCCCC--GTTACCCGCACACGCGTGCCAAACGATC-GC-GCACGCAGAGACCGACGG-
** * *
31029 CCTTGCCACGGATCACCTGGACCGCGCAGGGTCTCCATCACCGC
317 CCTCACCACGGATCACTTGGACCGCGAAGGGTCTCCATCACCGC
31073 GACAAGGTTT
Statistics
Matches: 698, Mismatches: 54, Indels: 32
0.89 0.07 0.04
Matches are distributed among these distances:
401 1 0.00
402 79 0.11
403 286 0.41
404 207 0.30
405 23 0.03
406 5 0.01
407 39 0.06
408 10 0.01
410 22 0.03
412 23 0.03
413 3 0.00
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.12
Consensus pattern (404 bp):
CGACCTGGATTTAATCGAGAGGGACACTCTGCCGGGGCGCGAACCATGCCAGGCGCATCGAGCAC
AATCCCCGACAGGCAACCGGCAGGACGAGCCCACCGTTGCCGATGCAAGGGCCGCGAGACTGCCC
CTGCTCGAGGGGCATGGCCAGGCCAAGCCCTCACCTGCAGCATCTGCCCACGCCACAACCGGGAC
TACCAACTCGAATTCGGGAACTTGGCAGAATCACCGCAGGTGCGAGCCTTGCCTTCCGGCACGAC
CACGCCCCGTTACCCGCACACGCGTGCCAAACGATCGCGCACGCAGAGACCGACGGCCTCACCAC
GGATCACTTGGACCGCGAAGGGTCTCCATCACCGCAGCTGGGCATCCGGCCACCGAAAACCACGA
TCGCAAGGCACGCG
Found at i:32234 original size:103 final size:101
Alignment explanation
Indices: 32082--32270 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
32072 CGGCCCGGGG
*
32082 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
32147 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
32183 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
32248 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
32271 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:32510 original size:64 final size:64
Alignment explanation
Indices: 32431--32552 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
32421 CGTTTGGTTG
*
32431 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
32495 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
32553 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:33492 original size:103 final size:101
Alignment explanation
Indices: 33340--33528 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
33330 CGGCCCGGGG
*
33340 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
33405 CTCGCCCACCCTCAGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCAGGTGCGGCCAGGAGCACGGTGC
* * * *
33441 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
33506 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCAGGTGCGG
33529 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.41, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCAGGTGCGGCCAGGAGCACGGTGC
Found at i:33768 original size:64 final size:64
Alignment explanation
Indices: 33689--33810 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
33679 CGTTTGGTTG
*
33689 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
33753 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
33811 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:34330 original size:103 final size:101
Alignment explanation
Indices: 34178--34366 Score: 297
Period size: 103 Copynumber: 1.9 Consensus size: 101
34168 CGGTCCGGGG
*
34178 GCGCCCTTCCCGCCCCCGTGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
1 GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
34243 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
66 CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
* * * *
34279 GCGCCCTTCCCGCCCCCTGGGGTGGGGGGCGGTCGGGGCGCCCACCTCGCGGGGCGCCGGTGCGC
1 GCGCCCTTCCCGCCCCC-GGGGT-GGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGC
* *
34344 GCCTCGCCCGCCCTCTGGTGCGG
64 GCCTCGCCCACCCTCGGGTGCGG
34367 GCGGCCGCGG
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 17 0.22
102 4 0.05
103 58 0.73
ACGTcount: A:0.05, C:0.43, G:0.42, T:0.11
Consensus pattern (101 bp):
GCGCCCTTCCCGCCCCCGGGGTGGGGGCGGCCGGGGCGCACACCACGCGGAGCGCCGGTGCGCGC
CTCGCCCACCCTCGGGTGCGGCCAGGAGCACGGTGC
Found at i:34608 original size:64 final size:64
Alignment explanation
Indices: 34529--34650 Score: 199
Period size: 64 Copynumber: 1.9 Consensus size: 64
34519 CGTTTGGTTG
*
34529 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCGCACGCTTGGCCCTCCGCATGTTAGAGA
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
* * * *
34593 GGGGGGAGGGCCGGATGGTTGGGAGGGACTCGTTGCCCACGCTTGGGCCTCCGCATGT
1 GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGT
34651 GCTATCGGTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 53 1.00
ACGTcount: A:0.13, C:0.23, G:0.46, T:0.18
Consensus pattern (64 bp):
GGGGGGAGGGACGGATGCTGGGGAGGGACTCGTTGCCCACGCTTGGCCCTCCGCATGTTAGAGA
Found at i:35114 original size:102 final size:102
Alignment explanation
Indices: 34991--35177 Score: 315
Period size: 102 Copynumber: 1.8 Consensus size: 102
34981 GGCCAGGTGC
* *
34991 ACGGTGCGCGCCCTGCCCGCCCCCTGGTGT-GGGGGCGGTCGGGGCGCACACCATGCGGAGCACC
1 ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACACCATGCGGAGCA-C
35055 GGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
65 GGTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
*
35093 ACGGTGCGCGCCCAT-CCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACGCCATGCGGAGCAC
1 ACGGTGCGCGCCC-TGCCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACACCATGCGGAGCAC
35157 GGTGCGCGCCTCGCCCACCCT
65 GGTGCGCGCCTCGCCCACCCT
35178 GGGGGGGTGC
Statistics
Matches: 80, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
102 49 0.61
103 31 0.39
ACGTcount: A:0.09, C:0.41, G:0.41, T:0.10
Consensus pattern (102 bp):
ACGGTGCGCGCCCTGCCCGCCCCCTGGGGTCGGGGGCGGGCGGGGCGCACACCATGCGGAGCACG
GTGCGCGCCTCGCCCACCCTCGGCTGCGGGCGGGAGA
Done.