Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold552
Parameters: 2 7 7 80 10 50 1000
Length:  68056

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4311--4352
2
21.0
2
100
0
84
50
0
0
50
1.00
6962--7002
21
2.0
21
85
9
57
63
0
7
29
1.21
8609--8670
30
2.1
29
87
3
88
51
6
12
29
1.65
9801--9834
2
17.0
2
100
0
68
50
0
0
50
1.00
13650--13682
2
16.0
2
93
6
57
48
0
3
48
1.17
17592--17630
19
2.1
19
85
9
53
23
5
17
53
1.63
17961--18022
19
3.2
19
82
8
72
69
4
3
22
1.22
17961--18030
9
7.3
9
75
10
59
70
4
2
22
1.19
19587--19648
29
2.1
30
88
8
92
32
0
3
64
1.09
24317--24351
16
2.1
17
89
5
54
82
0
17
0
0.66
24323--24352
10
3.0
10
95
0
51
86
0
13
0
0.57
31114--31139
13
2.0
13
100
0
52
84
15
0
0
0.62
32191--33032
27
31.0
27
90
3
1282
23
33
14
28
1.93
32191--33032
191
4.4
189
90
3
1309
23
33
14
28
1.93
32191--33032
218
3.9
216
92
3
1320
23
33
14
28
1.93
33015--33424
32
12.8
32
93
1
662
30
33
18
16
1.94
34673--34708
17
2.1
17
89
0
54
83
0
16
0
0.65
35078--35108
2
15.5
2
93
0
53
45
0
3
51
1.17
41889--41932
22
2.0
21
82
4
52
45
2
0
52
1.13
41901--41950
22
2.3
22
82
6
57
50
0
4
46
1.20
42032--42240
50
4.2
50
91
2
330
29
18
21
30
1.97
46632--46840
50
4.2
50
91
2
330
28
18
22
31
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51179--51236
29
2.0
30
93
3
100
37
1
0
60
1.07
51490--51537
11
4.3
11
76
12
53
75
0
0
25
0.81
51467--51523
24
2.3
26
84
9
82
66
1
0
31
1.02
51491--51537
22
2.1
22
92
0
76
74
0
0
25
0.82
51478--51537
24
2.6
23
84
10
70
73
1
0
25
0.93
51590--51648
6
8.7
7
73
19
54
59
1
0
38
1.08
51501--51656
60
2.7
57
71
16
124
62
1
0
35
1.11
51477--51647
22
7.3
24
66
21
69
63
1
0
34
1.09
53943--54008
20
3.3
19
83
12
80
27
3
37
31
1.72
53943--54029
6
13.0
6
75
20
66
28
2
35
33
1.70
54280--54339
20
3.0
20
74
13
59
23
6
26
43
1.78
54505--54680
41
4.3
41
74
11
153
27
2
27
43
1.67
53963--54904
7
135.0
7
69
14
206
31
1
25
41
1.66
54934--54986
14
3.8
13
80
9
52
30
0
22
47
1.52
54935--54989
21
2.7
20
75
16
58
32
0
21
45
1.52
56183--56272
47
1.9
47
95
0
162
45
6
8
38
1.62
58749--58886
69
2.0
69
89
0
213
34
28
6
29
1.82
61154--61178
2
12.5
2
100
0
50
0
48
0
52
1.00
63856--63885
16
1.9
15
93
6
51
30
16
0
53
1.44
64509--64611
7
14.6
7
73
9
75
41
18
1
37
1.62
64508--64701
14
14.0
14
71
12
114
42
23
1
31
1.64
64508--64598
21
4.3
21
73
2
85
41
19
1
37
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64623--64810
7
27.3
7
64
13
52
43
29
2
24
1.68
64759--64816
22
2.7
21
78
5
62
46
29
0
24
1.53
64895--65044
2
75.0
2
83
5
187
2
4
46
46
1.35
66591--66803
85
2.5
85
83
6
259
23
15
4
56
1.56

Tables:   1

The End!