Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold555
Parameters: 2 7 7 80 10 50 1000
Length:  85217

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
293--364
33
2.2
33
94
0
126
27
16
13
41
1.87
345--371
13
2.1
13
100
0
54
29
14
14
40
1.86
6456--6555
49
2.0
49
100
0
200
20
4
24
52
1.63
6464--6566
49
2.1
49
92
3
172
22
4
24
48
1.70
6778--6823
21
2.1
22
92
4
76
39
19
0
41
1.52
9188--9241
20
2.8
20
88
2
74
31
14
16
37
1.89
23311--23372
11
5.1
12
76
16
65
53
0
1
45
1.10
23610--23649
19
2.1
19
86
9
55
72
0
0
27
0.85
23624--23682
28
2.1
27
87
3
82
59
0
1
38
1.08
23637--23671
10
3.5
10
85
14
54
57
0
2
40
1.14
23835--23863
2
14.5
2
100
0
58
48
0
0
51
1.00
24129--24175
24
2.0
24
87
4
69
68
0
0
31
0.90
24128--24182
28
2.0
27
89
10
85
65
0
0
34
0.93
24137--24182
14
3.1
16
73
26
55
60
0
0
39
0.97
24177--24238
28
2.2
28
80
5
72
46
0
3
50
1.17
24185--24244
28
2.2
28
85
11
88
48
0
1
50
1.11
25314--25378
23
2.9
23
73
11
62
53
0
0
46
1.00
29178--29212
2
17.0
2
88
5
52
51
2
0
45
1.16
29176--29204
15
1.9
15
100
0
58
55
3
0
41
1.17
30331--30357
2
13.5
2
100
0
54
51
0
0
48
1.00
33947--33989
16
2.7
16
82
7
52
30
6
0
62
1.21
34071--34631
283
2.0
279
86
4
770
41
6
10
41
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34817--34849
16
2.1
16
94
0
57
42
0
0
57
0.98
34817--34856
17
2.4
17
83
8
55
42
0
0
57
0.98
35317--35451
67
2.0
67
95
0
243
29
14
14
42
1.84
35636--35684
16
3.1
15
82
8
62
59
6
2
32
1.34
44403--44461
16
3.7
16
77
8
57
57
8
3
30
1.45
45853--45953
22
4.1
26
75
19
76
50
0
0
48
1.07
45853--45960
26
4.5
25
70
21
72
49
0
0
50
1.07
45910--45953
22
2.0
23
95
4
81
52
0
0
47
1.00
45908--45960
22
2.5
21
82
14
65
50
0
0
49
1.00
47357--47525
34
5.0
34
92
0
230
26
0
33
40
1.56
52252--52383
34
3.9
34
86
0
165
28
0
31
40
1.57
52234--52383
68
2.2
69
80
3
178
28
0
32
39
1.62
55839--55882
20
2.1
21
87
4
63
72
0
13
13
1.12
57498--57534
2
18.5
2
100
0
74
51
0
0
48
1.00
61113--61185
26
2.9
25
79
18
80
79
8
9
2
1.03
61164--61201
16
2.2
17
90
9
60
81
10
7
0
0.87
61116--61201
20
4.7
18
71
23
54
77
9
10
2
1.07
61113--61194
28
3.0
25
69
22
67
79
8
9
2
1.03
62536--62726
28
7.0
26
74
10
96
29
28
18
23
1.98
62542--62716
82
2.1
81
83
6
219
29
29
17
24
1.97
62587--62716
54
2.4
56
77
8
133
30
29
16
23
1.96
62742--62837
28
3.4
27
73
12
86
31
28
17
22
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65476--65552
20
3.7
22
75
11
65
37
16
14
31
1.89
66232--66333
51
2.0
51
98
0
195
38
15
16
29
1.90
71783--71816
17
2.0
17
88
11
52
64
2
0
32
1.08
74112--74150
9
4.1
9
86
6
51
15
10
0
74
1.07
76367--76550
62
2.9
63
81
1
235
19
7
42
30
1.79
83621--83688
19
3.9
19
78
21
85
35
11
14
38
1.83
83623--83685
32
2.0
32
96
0
117
34
12
15
36
1.86
83642--83666
13
1.9
13
100
0
50
36
16
16
32
1.90
83728--83753
13
2.0
13
100
0
52
30
15
15
38
1.88
83708--83774
33
2.0
33
88
0
98
25
14
16
43
1.86

Tables:   1

The End!