Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold556
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 29125
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Found at i:1688 original size:19 final size:20
Alignment explanation
Indices: 1624--1799 Score: 92
Period size: 20 Copynumber: 8.4 Consensus size: 20
1614 AAAACGACAG
*
1624 AATGTATCGATACATTGAAG
1 AATGTATCGATACATTGAAA
* *
1644 AATGTATCGATTACA-TCATA
1 AATGTATCGA-TACATTGAAA
*
1664 CA-GTATCGAT-CATTGAAA
1 AATGTATCGATACATTGAAA
1682 AATGTATCGATACATCTAGGTAAAAAATA
1 AATGTATCGATACAT-T--G-----AA-A
* *
1711 GAATGTATCGATACATCCGAAG
1 -AATGTATCGATACAT-TGAAA
* *
1733 AATGTATCGATACATTCATA
1 AATGTATCGATACATTGAAA
* * *
1753 CATGTATCGATACATTCATA
1 AATGTATCGATACATTGAAA
* *
1773 CATGTATCGAT-CATTGAAG
1 AATGTATCGATACATTGAAA
1792 AATG-ATCG
1 AATGTATCG
1800 CTATACATCT
Statistics
Matches: 124, Mismatches: 18, Indels: 30
0.72 0.10 0.17
Matches are distributed among these distances:
17 2 0.02
18 9 0.07
19 23 0.19
20 47 0.38
21 20 0.16
23 3 0.02
28 3 0.02
29 1 0.01
30 16 0.13
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:1759 original size:20 final size:20
Alignment explanation
Indices: 1734--1787 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
1724 CATCCGAAGA
1734 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTCATAC
1754 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTCATAC
1774 ATGTATCGAT-CATT
1 ATGTATCGATACATT
1788 GAAGAATGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 4 0.12
20 30 0.88
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTCATAC
Found at i:2588 original size:47 final size:46
Alignment explanation
Indices: 2498--2658 Score: 184
Period size: 47 Copynumber: 3.5 Consensus size: 46
2488 GAGAGAGTAC
** * *
2498 CAATGTGCCAATTCAAGG-CAACGACATCGTGCTAAGGGAAAAGTTGA
1 CAATGTGCTGATTCAAGGCCAACAACAT-GAGCTAAGGG-AAAGTTGA
* *
2545 CAATGTGCTGATTCAAGGCCAGCAACATTGAGCTAAGGGAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAACAACA-TGAGCTAAGGGAAAGTTGA
* *
2592 CAATGTGCTGATTCAAGGCCAACGACATGAGCTAA--TAAAGGTTAGA
1 CAATGTGCTGATTCAAGGCCAACAACATGAGCTAAGGGAAA-GTT-GA
2638 CAATGTGCTGATTCAAGGCCA
1 CAATGTGCTGATTCAAGGCCA
2659 CATTTGTTGT
Statistics
Matches: 100, Mismatches: 10, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 31 0.31
47 48 0.48
48 15 0.15
49 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20
Consensus pattern (46 bp):
CAATGTGCTGATTCAAGGCCAACAACATGAGCTAAGGGAAAGTTGA
Found at i:2896 original size:56 final size:56
Alignment explanation
Indices: 2808--4926 Score: 2325
Period size: 56 Copynumber: 37.5 Consensus size: 56
2798 TATCGACTTG
* *
2808 TGTGGGCTTTAAAAGGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
2865 TGTGAGCTTTGGAAGGGTGCCACTGATTTGTGTAGGCTTTGAAAGGGTATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTG--GGCTTTGAAA-GG-ATGCCACTGACT
* * * * *
2925 TGTGGGCTTTGAAAGGGTACCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
2981 TGTGGCCTTTGAAAGGATGCCACTGACTTGTGAGCTTTGAAGGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
3037 TGTGGGCATTGAAAGGGTGCCACTGACTTGTGGGCATTGAAAAGATGCCA---ACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * **
3090 TGTTGGTTTTGAAAGGATGCCACTGACTTGTGGTTTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGG-GCTTTGAAAG-GATGCCACTGACT
* * * *
3147 TGTAGTCTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
3204 TGTAGGCATTGAAAGGGTGCCATTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
3260 TGTGGGCTTTTG-AAGAGATGCCACTGACTTGTAGGCTTTAAAAGGATGCCATTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
3317 TGTGGGCTTTGAAAAGG-TGCCACTAACTTGTGGGCTTTGAAAGAATGCCACTAACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
3373 TGTGGGCTTTAAAAGGATACCACTAACTTGTGGGCTTTGAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
3429 TGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
3485 TGT-GGCTTTGAAAGGTTGTCACTGACTTGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTGACT
* * * * *
3541 TGTGGTCTTTTG-AAGAGATGACACTGACTTGTGGGCTTTGAAAGGATGTCACTAATT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
3598 TGTGGGATTT-AAATGGGTGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
3654 TGTGGGCTTTTAAAGAGATGCCACTGACTTGTGGGCTTCGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
3711 TGTGGGCTTTCAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
3767 TGTGGGCTTTGAAA-GATGCCACTTACTT-TGGGCATTT-AAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAGGATGCCACTGACT
* * * *
3821 TGTGGTCTTTTG-AAGAAATGCCACTGACTTGTGAGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
3878 TGTGGGCTTTGAAAGGGTGCCACTGGCTTGTGGGCTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTGACT
* * *
3934 TGTGGGCTTTTG-AAGAGATGCCACTAACTTGTGAGCTTTGAGAGGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
3991 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
4047 TGTGGG-TTTCGAAAAGATGCCACTGAATTGTGGGCTTTGAAAGAATGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
4103 TGTGAGTTTTGAAAGGATGCCACTAACTTGT-GGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
4158 TGTGGGCTTTGAAAGGATGCCATTAATTTGTGGGC-TTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
** * * ** *
4213 TGTGGTATTTTG-AAGAGATGCCACTAACCTGTGTTCTTTTAAAGAGATGCCACTGACT
1 TGTGG-GCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTGACT
* * *
4271 TGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCTTT-AAATGG-TGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA-GGATGCCACTGACT
* * * *
4326 TGTGGGCTTTGAAAAGATGCCACTGACTTGTAGGCTTTTG-AAGAGATGCCACTAATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
4383 TGTGGGCTTTGAAAAGATGCCACTGACTTGTTGGCTTTGAATGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
4439 TGTGGGCTTTGAAAGGATGCCACTAACTTGTCGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
4495 TGTGGGCTTTGAAAAGG-TACCACTGACTTGTGAGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
4551 TGTGGGCTTTGAAATGATGCCACTAACTTGTGGGCTTTAAAAGGGTGGCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
4607 TGTGGGCTTTGAAA-GATGTCACTGACTTGTGGGTTTTTG-AAGAGATGCCGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG-CTTTGAAAG-GATGCCACTGACT
* * * *
4663 TGT-GGCTTTGAAAGGATGCCATTAACTTGTGGGTTTTGAAAGGGTGCCCCTAACATGCCACTAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA--G-G--------ATGCCACTGA
4727 CT
55 CT
*
4729 TGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
4785 TTTGGGCTTTGAAAGGATGCCATTGACTTGTGGGTTTTGAAAAGATGCCACTAACCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGA-CT
* * * * * *
4842 TGTGGACTTTGAAAAGG-TTCCACTGACTTATGGGCTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
4898 TTTGGGCTTTAAAAGGATGCCACTAACTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTT
4927 ATGAGCTTAA
Statistics
Matches: 1769, Mismatches: 219, Indels: 149
0.83 0.10 0.07
Matches are distributed among these distances:
53 34 0.02
54 39 0.02
55 225 0.13
56 904 0.51
57 373 0.21
58 106 0.06
59 2 0.00
60 38 0.02
64 1 0.00
66 15 0.01
67 32 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (56 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:3036 original size:84 final size:84
Alignment explanation
Indices: 2808--4926 Score: 2397
Period size: 84 Copynumber: 25.0 Consensus size: 84
2798 TATCGACTTG
* * * *
2808 TGTGGGCTTTAAAAGGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGAGCT
1 TGTGGGCTTTGAAA-GGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
* * *
2873 TTGGAAGGGTGCCACTGATT
65 TTGAAAGGATGCCACTGACT
* *
2893 TGTGTAGGCTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAAAGGGTACCACTAACTTGTGG
1 TGTG--GGCTTTGAAA-GG-ATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGG
* *
2958 GCTTTGAAAGGGTGCCACTAACT
62 GCTTTGAAAGGATGCCACTGACT
* * * *
2981 TGTGGCCTTTGAAAGGATGCCACTGACTTGTGAGCTTTGAAGGGATGCCACTAACTTGTGGGCAT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
3046 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * * * **
3065 TGTGGGCATTGAAAAGATGCCA---ACTTGTTGGTTTTGAAAGGATGCCACTGACTTGTGGTTTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGG-GCT
3127 TTG-AAGAGATGCCACTGACT
65 TTGAAAG-GATGCCACTGACT
* * * *
3147 TGTAGTCTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* * *
3211 ATTGAAAGGGTGCCATTGACT
64 TTTGAAAGGATGCCACTGACT
* * *
3232 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTTG-AAGAGATGCCACTGACTTGTAGGC
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGC
* * *
3296 TTTAAAAGGATGCCATTAACT
64 TTTGAAAGGATGCCACTGACT
* *
3317 TGTGGGCTTTGAAAAGG-TGCCACTAACTTGTGGGCTTTGAAAGAATGCCACTAACTTGTGGGCT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
* * *
3381 TTAAAAGGATACCACTAACT
65 TTGAAAGGATGCCACTGACT
* * *
3401 TGTGGGCTTTGAAAGGATGCCATTGACTTGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
3466 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * *
3485 TGT-GGCTTTGAAAGGTTGTCACTGACTTGTGGGCTTTTAAAGAGATGCCACTAACTTGTGGTCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTAACTTGTGGGC-
*
3549 TTTG-AAGAGATGACACTGACT
64 TTTGAAAG-GATGCCACTGACT
* * * * * *
3570 TGTGGGCTTTGAAAGGATGTCACTAATTTGTGGGATTT-AAATGGGTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA-GGATGCCACTAACTTGTGGGCT
*
3634 TTGAAAAGATGCCACTGACT
65 TTGAAAGGATGCCACTGACT
* *
3654 TGTGGGCTTTTAAAGAGATGCCACTGACTTGTGGGCTTCGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
* *
3719 TTCAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * *
3739 TGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTTACTT-TGGGCAT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-T
*
3802 TT-AAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * *
3821 TGTGGTCTTTTG-AAGAAATGCCACTGACTTGTGAGCTTTGAAAGGATGCCACTAACTTGTGGGC
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC
* *
3885 TTTGAAAGGGTGCCACTGGCT
64 TTTGAAAGGATGCCACTGACT
*
3906 TGTGGGCTTTG-AAGAGATGCCACTGACTTGTGGGCTTTTG-AAGAGATGCCACTAACTTGTGAG
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGG
*
3969 CTTTGAGAGGATGCCACTGACT
63 CTTTGAAAGGATGCCACTGACT
* * *
3991 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGG-TT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
4055 TCGAAAAGATGCCACTGAAT
66 T-GAAAGGATGCCACTGACT
* * * *
4075 TGTGGGCTTTGAAAGAATGCCATTGACTTGTGAGTTTTGAAAGGATGCCACTAACTTGT-GGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
*
4139 TGAAAGGGTGCCACTGACT
66 TGAAAGGATGCCACTGACT
* * * * **
4158 TGTGGGCTTTGAAAGGATGCCATTAATTTGTGGGC-TTGAAAGGATGCCACTGACTTGTGGTATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGG-GCT
* *
4222 TTG-AAGAGATGCCACTAACC
65 TTGAAAG-GATGCCACTGACT
** * *
4242 TGTGTTCTTTTAAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
*
4307 TT-AAATGG-TGCCATTGACT
65 TTGAAA-GGATGCCACTGACT
* * *
4326 TGTGGGCTTTGAAAAGATGCCACTGACTTGTAGGCTTTTG-AAGAGATGCCACTAATTTGTGGGC
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGC
*
4390 TTTGAAAAGATGCCACTGACT
64 TTTGAAAGGATGCCACTGACT
* * * *
4411 TGTTGGCTTTGAATGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTCGGCTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
4476 TGAAAAGATGCCACTAACT
66 TGAAAGGATGCCACTGACT
* * *
4495 TGTGGGCTTTGAAAAGG-TACCACTGACTTGTGAGCTTTGAAAAGATGCCACTAACTTGTGGGCT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
* *
4559 TTGAAATGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
* * * * * *
4579 TGTGGGCTTTAAAAGGGTGGCACTGACTTGTGGGCTTTGAAA-GATGTCACTGACTTGTGGGTTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGG-CT
*
4643 TTG-AAGAGATGCCGCTGACT
65 TTGAAAG-GATGCCACTGACT
* * *
4663 TGT-GGCTTTGAAAGGATGCCATTAACTTGTGGGTTTTGAAAGGGTGCCCCTAACATGCCACTAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA--G-G--------ATGCCACTAA
4727 CTTGTGGGCTTTGAAA-GAGTGCCACTGACT
55 CTTGTGGGCTTTGAAAGGA-TGCCACTGACT
* * * * *
4757 TGTGGGCTTTGAAAAGATGCCACTGACTTTTGGGCTTTGAAAGGATGCCATTGACTTGTGGGTTT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
* *
4822 TGAAAAGATGCCACTAACCT
66 TGAAAGGATGCCACTGA-CT
* * * * * *
4842 TGTGGACTTTGAAAAGG-TTCCACTGACTTATGGGCTTTGAAAAGATGTCACTAACTTTTGGGCT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
* *
4906 TTAAAAGGATGCCACTAACT
65 TTGAAAGGATGCCACTGACT
4926 T
1 T
4927 ATGAGCTTAA
Statistics
Matches: 1742, Mismatches: 221, Indels: 143
0.83 0.10 0.07
Matches are distributed among these distances:
81 34 0.02
82 75 0.04
83 223 0.13
84 698 0.40
85 448 0.26
86 113 0.06
87 13 0.01
88 66 0.04
92 1 0.00
93 3 0.00
94 17 0.01
95 51 0.03
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (84 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
TGAAAGGATGCCACTGACT
Found at i:4716 original size:28 final size:28
Alignment explanation
Indices: 2808--4710 Score: 2168
Period size: 28 Copynumber: 67.8 Consensus size: 28
2798 TATCGACTTG
*
2808 TGTGGGCTTTAAAAGGGATGCCACTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
*
2837 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
2865 TGTGAGCTTTGGAAGGGTGCCACTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
2893 TGTGTAGGCTTTGAAAGGGTATGCCACTGACT
1 TGTG--GGCTTTGAAA-GG-ATGCCACTGACT
* * *
2925 TGTGGGCTTTGAAAGGGTACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
2953 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
2981 TGTGGCCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
3009 TGTGAGCTTTGAAGGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3037 TGTGGGCATTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3065 TGTGGGCATTGAAAAGATGCCA---ACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3090 TGTTGGTTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
**
3118 TGTGGTTTTTTG-AAGAGATGCCACTGACT
1 TGTGG-GCTTTGAAAG-GATGCCACTGACT
* * *
3147 TGTAGTCTTTTG-AAGAGATGCCATTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
3176 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
3204 TGTAGGCATTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
3232 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
3260 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
3289 TGTAGGCTTTAAAAGGATGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
3317 TGTGGGCTTTGAAAAGG-TGCCACTAACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* *
3345 TGTGGGCTTTGAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
3373 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
3401 TGTGGGCTTTGAAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
3429 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
3457 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3485 TGT-GGCTTTGAAAGGTTGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3512 TGTGGGCTTTTAAAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* *
3541 TGTGGTCTTTTG-AAGAGATGACACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * *
3570 TGTGGGCTTTGAAAGGATGTCACTAATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3598 TGTGGGATTT-AAATGGGTGCCACTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
*
3626 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
3654 TGTGGGCTTTTAAAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* *
3683 TGTGGGCTTCGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3711 TGTGGGCTTTCAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3739 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
3767 TGTGGGCTTTGAAA-GATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
3794 T-TGGGCATTT-AAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
* *
3821 TGTGGTCTTTTG-AAGAAATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
3850 TGTGAGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3878 TGTGGGCTTTGAAAGGGTGCCACTGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
3906 TGTGGGCTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
*
3934 TGTGGGCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
3963 TGTGAGCTTTGAGAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
3991 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
4019 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
4047 TGTGGG-TTTCGAAAAGATGCCACTGAAT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
4075 TGTGGGCTTTGAAAGAATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
4103 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
4131 TGT-GGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
4158 TGTGGGCTTTGAAAGGATGCCATTAATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
4186 TGTGGGC-TTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
** * *
4213 TGTGGTATTTTG-AAGAGATGCCACTAACC
1 TGTGG-GCTTTGAAAG-GATGCCACTGACT
** *
4242 TGTGTTCTTTTAAAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
*
4271 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
4299 TATGGGCTTT-AAATGG-TGCCATTGACT
1 TGTGGGCTTTGAAA-GGATGCCACTGACT
*
4326 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
4354 TGTAGGCTTTTG-AAGAGATGCCACTAATT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
4383 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
4411 TGTTGGCTTTGAATGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
4439 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
4467 TGTCGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
4495 TGTGGGCTTTGAAAAGG-TACCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* * *
4523 TGTGAGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
4551 TGTGGGCTTTGAAATGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
4579 TGTGGGCTTTAAAAGGGTGGCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
4607 TGTGGGCTTTGAAA-GATGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
4634 TGTGGGTTTTTG-AAGAGATGCCGCTGACT
1 TGTGGG-CTTTGAAAG-GATGCCACTGACT
* *
4663 TGT-GGCTTTGAAAGGATGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
4690 TGTGGGTTTTGAAAGGGTGCC
1 TGTGGGCTTTGAAAGGATGCC
4711 CCTAACATGC
Statistics
Matches: 1605, Mismatches: 217, Indels: 105
0.83 0.11 0.05
Matches are distributed among these distances:
25 21 0.01
26 8 0.00
27 173 0.11
28 1065 0.66
29 301 0.19
30 21 0.01
31 2 0.00
32 14 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:4796 original size:95 final size:95
Alignment explanation
Indices: 4626--4805 Score: 247
Period size: 95 Copynumber: 1.9 Consensus size: 95
4616 TGAAAGATGT
* * * * *
4626 CACTGACTTGTGGGTTTTTGAAGAGATGCCGCTGACTTGTGGCTTTGAAAGGATGCCATTAACTT
1 CACTAACTTGTGGGTCTTTGAAGAGATGCCACTGACTTGTGGCTTTGAAAAGATGCCACTAACTT
* *
4691 GTGGGTTTTGAAAGGGTGCCCCTAACATGC
66 GTGGGCTTTGAAAGGATGCCCCTAACATGC
*
4721 CACTAACTTGTGGG-CTTTGAA-AGAGTGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGAC
1 CACTAACTTGTGGGTCTTTGAAGAGA-TGCCACTGACTTGT-GGCTTTGAAAAGATGCCACTAAC
*
4784 TTTTGGGCTTTGAAAGGATGCC
64 TTGTGGGCTTTGAAAGGATGCC
4806 ATTGACTTGT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
93 3 0.04
94 19 0.26
95 52 0.70
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (95 bp):
CACTAACTTGTGGGTCTTTGAAGAGATGCCACTGACTTGTGGCTTTGAAAAGATGCCACTAACTT
GTGGGCTTTGAAAGGATGCCCCTAACATGC
Found at i:4934 original size:28 final size:28
Alignment explanation
Indices: 4717--4926 Score: 253
Period size: 28 Copynumber: 7.5 Consensus size: 28
4707 TGCCCCTAAC
4717 ATGCCACTAACTTGTGGGCTTTG-AAAG
1 ATGCCACTAACTTGTGGGCTTTGAAAAG
*
4744 AGTGCCACTGACTTGTGGGCTTTGAAAAG
1 A-TGCCACTAACTTGTGGGCTTTGAAAAG
* * *
4773 ATGCCACTGACTTTTGGGCTTTGAAAGG
1 ATGCCACTAACTTGTGGGCTTTGAAAAG
* * *
4801 ATGCCATTGACTTGTGGGTTTTGAAAAG
1 ATGCCACTAACTTGTGGGCTTTGAAAAG
*
4829 ATGCCACTAACCTTGTGGACTTTGAAAAG
1 ATGCCACTAA-CTTGTGGGCTTTGAAAAG
* * * *
4858 GTTCCACTGACTTATGGGCTTTGAAAAG
1 ATGCCACTAACTTGTGGGCTTTGAAAAG
* *
4886 ATGTCACTAACTTTTGGGCTTT-AAAAGG
1 ATGCCACTAACTTGTGGGCTTTGAAAA-G
4914 ATGCCACTAACTT
1 ATGCCACTAACTT
4927 ATGAGCTTAA
Statistics
Matches: 157, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
27 5 0.03
28 124 0.79
29 28 0.18
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (28 bp):
ATGCCACTAACTTGTGGGCTTTGAAAAG
Found at i:10141 original size:22 final size:21
Alignment explanation
Indices: 10090--10142 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 21
10080 TGTACAGAGC
*
10090 AATCGAGTTTAACATTTGAATT
1 AATCGAG-TTAACATTCGAATT
* * *
10112 AATTGAGTTAATATTCGGATT
1 AATCGAGTTAACATTCGAATT
10133 AAATCGAGTT
1 -AATCGAGTT
10143 TAGTTATTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 11 0.44
22 14 0.56
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.40
Consensus pattern (21 bp):
AATCGAGTTAACATTCGAATT
Found at i:13783 original size:20 final size:20
Alignment explanation
Indices: 13758--13973 Score: 135
Period size: 20 Copynumber: 9.7 Consensus size: 20
13748 TTTTAACTAG
13758 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
13778 ATGTATCGATACATTTGGAAAAAAAGATAGA
1 ATGTATCGATACA-TT-G------A-A-A-A
* *
13809 ATGTAACGATACATTGAATA
1 ATGTATCGATACATTGAAAA
* * *
13829 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
*
13849 ATGTATTGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
13869 ATGTATCGATACATCTGGGTAAAAAAATAAA
1 ATGTATCGATACAT-T--G-------A-AAA
*
13900 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * *
13920 ATGTATCGATACATTCATAC
1 ATGTATCGATACATTGAAAA
13940 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
*
13960 CTGTATCGATACAT
1 ATGTATCGATACAT
13974 CTGGGTAAAA
Statistics
Matches: 153, Mismatches: 21, Indels: 44
0.70 0.10 0.20
Matches are distributed among these distances:
20 106 0.69
21 4 0.03
22 2 0.01
23 2 0.01
28 2 0.01
29 2 0.01
30 5 0.03
31 30 0.20
ACGTcount: A:0.43, C:0.12, G:0.15, T:0.31
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:13819 original size:51 final size:48
Alignment explanation
Indices: 13758--13934 Score: 181
Period size: 51 Copynumber: 3.7 Consensus size: 48
13748 TTTTAACTAG
13758 ATGTATCGATACATTGAAAAATGTATCGATACATTTGGAAAAAAAGATAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATTTGG-AAAAAA-ATA-A
* * * *
13809 ATGTAACGATACATTGAATAATGTATCGATACA-TT-------CATAC
1 ATGTATCGATACATTGAAAAATGTATCGATACATTTGGAAAAAAATAA
* *
13849 ATGTATTGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAATAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACAT-TTGG-AAAAAAAT-AA
*
13900 ATGTATCGATACATTGAAGAATGTATCGATACATT
1 ATGTATCGATACATTGAAAAATGTATCGATACATT
13935 CATACATGTA
Statistics
Matches: 103, Mismatches: 12, Indels: 23
0.75 0.09 0.17
Matches are distributed among these distances:
40 30 0.29
41 3 0.03
42 1 0.01
50 5 0.05
51 64 0.62
ACGTcount: A:0.44, C:0.10, G:0.16, T:0.31
Consensus pattern (48 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATTTGGAAAAAAATAA
Found at i:13867 original size:91 final size:91
Alignment explanation
Indices: 13758--13984 Score: 366
Period size: 91 Copynumber: 2.5 Consensus size: 91
13748 TTTTAACTAG
* *
13758 ATGTATCGATACATTGAAAAATGTATCGATACAT-TTGGAAAAAAAGATAGAATGTAACGATACA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAA-ATAAAATGTAACGATACA
*
13822 TTGAATAATGTATCGATACATTCATAC
65 TTGAAGAATGTATCGATACATTCATAC
* * *
13849 ATGTATTGATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAATAAAATGTATCGATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAAATAAAATGTAACGATACAT
13914 TGAAGAATGTATCGATACATTCATAC
66 TGAAGAATGTATCGATACATTCATAC
* *
13940 ATGTATCGATACATTGAAAACTGTATCGATACATCTGGGTAAAAA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAA
13985 TGTGACTTTT
Statistics
Matches: 127, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
91 118 0.93
92 9 0.07
ACGTcount: A:0.43, C:0.11, G:0.16, T:0.30
Consensus pattern (91 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTGGGAAAAAAAATAAAATGTAACGATACAT
TGAAGAATGTATCGATACATTCATAC
Found at i:14784 original size:49 final size:48
Alignment explanation
Indices: 14666--14878 Score: 256
Period size: 46 Copynumber: 4.5 Consensus size: 48
14656 AGAAGAGTGC
** * * *
14666 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTTGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
*
14714 CAATGTGATGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGG-A
* *
14763 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA--TAAAGGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
* * * *
14809 CAATGTGCTGATTCAAGGCTAGCGACATTGAGCTAA--TAAAGGT-GC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
* *
14854 CAATATGCTGATTCAATGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
14879 TATCGGACTT
Statistics
Matches: 150, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
45 23 0.15
46 43 0.29
47 7 0.05
48 41 0.27
49 36 0.24
ACGTcount: A:0.34, C:0.18, G:0.27, T:0.21
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTGGA
Found at i:14810 original size:21 final size:22
Alignment explanation
Indices: 14784--14853 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
14774 TTCAAGGCCA
14784 GCGACATTGAGCTAATAAAGGT
1 GCGACATTGAGCTAATAAAGGT
* * * *
14806 G-GACAATGTGCTGATTCAAGGCT
1 GCGACATTGAGCT-AATAAAGG-T
14829 AGCGACATTGAGCTAATAAAGGT
1 -GCGACATTGAGCTAATAAAGGT
14852 GC
1 GC
14854 CAATATGCTG
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
21 9 0.25
22 9 0.25
23 2 0.06
24 7 0.19
25 9 0.25
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.23
Consensus pattern (22 bp):
GCGACATTGAGCTAATAAAGGT
Found at i:14835 original size:25 final size:25
Alignment explanation
Indices: 14762--14835 Score: 75
Period size: 25 Copynumber: 3.1 Consensus size: 25
14752 GAAAAGTGGA
*
14762 ACAATGTGCTGATTCAAGGCCAGCG
1 ACAATGTGCTGATTCAAGGCTAGCG
* * * *
14787 ACATTGAGCT-AATAAAGG-T-G-G
1 ACAATGTGCTGATTCAAGGCTAGCG
14808 ACAATGTGCTGATTCAAGGCTAGCG
1 ACAATGTGCTGATTCAAGGCTAGCG
14833 ACA
1 ACA
14836 TTGAGCTAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 8
0.68 0.17 0.15
Matches are distributed among these distances:
21 9 0.25
22 7 0.19
23 1 0.03
24 7 0.19
25 12 0.33
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (25 bp):
ACAATGTGCTGATTCAAGGCTAGCG
Found at i:14840 original size:95 final size:96
Alignment explanation
Indices: 14666--14844 Score: 261
Period size: 95 Copynumber: 1.9 Consensus size: 96
14656 AGAAGAGTGC
*
14666 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAGTTGACAATGTGATGATTCAAG
1 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAA-GGAAAAGTGGACAATGTGATGATTCAAG
14731 GCCAGCGACATTGAGCTAAGGGAAAAGTGGAA
65 GCCAGCGACATTGAGCTAAGGGAAAAGTGGAA
** * * * * *
14763 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAA-TAAAGGTGGACAATGTGCTGATTCAAGG
1 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGAAAAGTGGACAATGTGATGATTCAAGG
*
14827 CTAGCGACATTGAGCTAA
66 CCAGCGACATTGAGCTAA
14845 TAAAGGTGCC
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
95 41 0.56
97 32 0.44
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (96 bp):
CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGAAAAGTGGACAATGTGATGATTCAAGG
CCAGCGACATTGAGCTAAGGGAAAAGTGGAA
Found at i:14850 original size:24 final size:24
Alignment explanation
Indices: 14777--14850 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
14767 GTGCTGATTC
*
14777 AAGGCCAGCGACATTGAGCTAATA
1 AAGGCTAGCGACATTGAGCTAATA
* * * *
14801 AAGG-T-G-GACAATGTGCTGATTC
1 AAGGCTAGCGACATTGAGCT-AATA
14823 AAGGCTAGCGACATTGAGCTAATA
1 AAGGCTAGCGACATTGAGCTAATA
14847 AAGG
1 AAGG
14851 TGCCAATATG
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
21 9 0.24
22 7 0.19
23 1 0.03
24 11 0.30
25 9 0.24
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.20
Consensus pattern (24 bp):
AAGGCTAGCGACATTGAGCTAATA
Found at i:15048 original size:28 final size:28
Alignment explanation
Indices: 14992--19221 Score: 3545
Period size: 28 Copynumber: 151.0 Consensus size: 28
14982 CACCGACTTG
*
14992 TGTGGGCTTTAAAAGGGGATGCCACTGACT
1 TGTGGGCTTTGAAA--GGATGCCACTGACT
* * * *
15022 TATGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
15050 TGTAGGC-TTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
15077 TATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
15105 TGTGTAGGCTTTGAAATGGTATGCCATTGACT
1 TGTG--GGCTTTGAAA-GG-ATGCCACTGACT
* *
15137 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
15165 TGTGGGCTTTGAAAGGATGCCGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
15193 TTTGGGCTTTGAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
15221 TATGGGCTTTG-AAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
** * *
15248 TGT-GGCTTTGAAAATATGCCACTAACA
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
15275 TGTGGGCTTT-AAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
15302 TGTGGTCTTTTG-AAGAGATGCCACTGGACT
1 TGTGGGC-TTTGAAAG-GATGCCACT-GACT
*
15332 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
15361 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
15389 TGTAGGCTTTGAAAATG-TGGCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
**
15417 TGTGGGCTTTGAAAATATG-CACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
15444 TGTAGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
15473 TGTGAGC-TTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
15500 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
15528 TAG-GGGCATTGAAAGG-TGCCACTAACT
1 T-GTGGGCTTTGAAAGGATGCCACTGACT
* *
15555 TGTGGCCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
15583 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** *
15611 TGT-GGCTTTGAAAGGGTGTTACT-AAT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
15637 TGT-GGCTTTAAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
15664 TGTGGGCGTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
15692 TGTGGGTTTTGAAAAGTTACCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
15719 TGT-GGCTTTTAAAGAGACTG-CACTAACT
1 TGTGGGCTTTGAAAG-GA-TGCCACTGACT
* * *
15747 TGTGGTCTTTCG-AAGAGATGTCACTAACT
1 TGTGGGCTTT-GAAAG-GATGCCACTGACT
*
15776 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
15804 TGT-AG-TTTTAAAGGGTGCCACTGA-A
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
15829 TGTGGGC-TTGAAAAGATGCCATTGAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
15855 TGTTGGCTTTTTG-AAGAGATGCCA-TAGACT
1 TGTGGGC--TTTGAAAG-GATGCCACT-GACT
15885 TGTGGGCTTTGAAAGGATGCCACT-ACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
15912 TATGGGCTCTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
15940 TGTGGGCTTTGAAAGCATGCCACTG-CT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
15967 TGTGGGC-TTGAAAAGATCGCCACTTAACT
1 TGTGGGCTTTGAAAGGAT-GCCAC-TGACT
* *
15996 TGTGGGCTCTTGAAAGGATGCCACTAACC
1 TGTGGGCT-TTGAAAGGATGCCACTGACT
*
16025 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
16054 TGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * *
16083 TGTGGG-TTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
16110 TGTGGGCTTTGAAAGGGTGCCATTCATT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
16138 TATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* **
16166 TATGAGTTTTTG-AAGAGATGCCACTGACT
1 TGTG-GGCTTTGAAAG-GATGCCACTGACT
* *
16195 TGTGGGCTTTGAAA-GTTGCCACTAAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
16221 TGTGCGCTTTGTAATGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
16249 TGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
16277 TGTGGGCTTTGAAAGGGTGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
16305 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
16333 TGTGGGC-TTGAAAAGAAGCCATTAAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACT
**
16359 T-TAAGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
* * *
16386 TGTGGGTTTTGAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
16414 TATGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
** * *
16443 TGTGTTCTTTTG-AAGAGATGCCACTAACC
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
16472 TGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
16500 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
16528 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
**
16556 TGTGGGCTTTGAAAATATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
16584 TATGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
16613 TGTAGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
16641 TGTAGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
16669 TGT-GGTTTTCGAAAAGATGCCATTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
16697 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** *
16725 TGTGGTCTTCAAAAATGCCACTGCCACTGACT
1 TGTGGGCTT-TGAAA-G-GA-TGCCACTGACT
*
16757 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
16785 TGTGGGCTTTCATA-GAGTGCTACTAACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
16813 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
16841 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
16869 TGTGGACTTTGAAAGAATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
16897 TGTGGGCTTTGAAAGGGTGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
16925 TATGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
16953 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
16981 TATGGGATTTAAAAGGGTACCACTAAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
17008 TGTGGCCTTAGAAA-AATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
17035 TGTGAGCTTTTG-AAGAGATGCAACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * *
17064 TGTAGGCTTTCAAAGGATGCTACTAAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
17091 TGTAGGCTTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
*
17119 TGTGGGCTTTG-AAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
17146 TGT-GGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
17174 TGTGAGCTTTGAAAGGATGCCACT---T
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
17199 GTGTGGGCTTTGAAAGGATGCCACTAACT
1 -TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
17228 TATGGGCATTGAAAAGG-TCACCACTGACT
1 TGTGGGCTTTG-AAAGGAT-GCCACTGACT
*
17257 TGTGGGC-TTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
17284 TGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *** *
17312 TGTGGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
17340 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
17368 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
17396 TGTGGGCTTTGAAAAG-TGCCAGT-ACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
17422 TGTGGGCTTTTAAAGAGATG-CACTACAACT
1 TGTGGGCTTTGAAAG-GATGCCACT--GACT
*
17452 TGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
17481 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
17509 TGTAGGCTTT-AAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
17536 TGTGGGTTTTAAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
17564 TGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* * *
17593 TGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
17622 TGTGGGGCTTTG-AAGGATGCCACTGACT
1 TGT-GGGCTTTGAAAGGATGCCACTGACT
* *
17650 TATGGGC-TTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
17677 TGTGGGCTTTGAAAGGGTGTCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
17705 TGTGGGCTTTGAAA-GATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
17732 TGTGGGCTTTGAAAGGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
17760 TGTGGTCTTTTG-AAGAGATACCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* *
17789 TGTGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
* * * * *
17818 TGTGTGTTTTGAAAAGATGTCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
17846 TATGGGTTTTGAAAGGGTGCCACTCA-T
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
17873 T-TAGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
17900 TGTGGGCTTTTGAAAAAGATGCCATTGACT
1 TGTGGGC-TTTG-AAAGGATGCCACTGACT
** * * *
17930 TGTTTGCTTTGAAAAGATGCCACTAACC
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
17958 TGTGGGC-TT-AAAGGATACCACTGAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
17983 TGTGAGTTTTG-AA-GATGCCACTAAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
18008 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
18036 TGTGGGCGTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
18064 TGT-GGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
18091 TGTGGGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGA-AAGGATGCCACTGACT
18119 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
18147 TAG-GGTCTTTTG-AAGAGATGCCACTGAC-
1 T-GTGGGC-TTTGAAAG-GATGCCACTGACT
** *
18175 TGTGTTCTTTG-AAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
* * *
18203 TGTGTGATTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
18231 TGTGGGCTTTAAAAGGGTGCCGCTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
18259 TGTGGGCTTTGAAATGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
18287 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
18316 TGTGGGCTTTTG-AA-GATGCCACTGACT
1 TGTGGGC-TTTGAAAGGATGCCACTGACT
18343 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
18371 TGTAGGCTTGGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
18399 TGT-GGTTTTCGAAAAGATGCCACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
18427 TGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
18455 TGTGGGCTTTGAAA-GAGTGCTACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
18483 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
18511 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
18539 TGTGGGCTTCGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
18567 TGTGGGCTTTGAAAGGGTGCCACT-ACCT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CT
* * * *
18595 TGTGGGCTTTGAAAGGAAGCGATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
18623 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
18651 TGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
18679 TGTGGGCTTTGGAAA-AATGGCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
*
18707 TGTGAGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
*
18736 TGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
18764 TGTGGGCTTTGAAAGGGTGCTACTGACA
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*** * ** *
18792 TG-CCACTAACTTG--TGG--G-CTTTGA-A
1 TGTGGGCT---TTGAAAGGATGCCACTGACT
* * * ** *** * ** **
18816 AGAGTGCCACTGACTTG-TGGGCTTTGAAA
1 TGTG-GGCTTTGAAAGGAT-GCCACTGACT
* ** ** * ** *
18845 AGATGTCACTGACTTG-TGGGCTTGAAAGGATGCCACT
1 TG-TG-GGCT---TTGAAAGG-ATGCCA--CTG--ACT
* ** * *
18882 AACT-TGTAGGCTTTAAAGGGTGCCACTGACT
1 ---TGTG-GGCTTTGAAAGGATGCCACTGACT
* * *
18913 TGTGGGCTTTGAAAAGATTCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
18941 TGTGGGTTTTTG-AAGAGATGCCATTGACT
1 TGTGGG-CTTTGAAAG-GATGCCACTGACT
*
18970 TGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
*
18998 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
19026 TGTGGAG-TTTGAAAAGAAGCCATTAACT
1 TGTGG-GCTTTGAAAGGATGCCACTGACT
* *
19054 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
19082 TGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
19110 TGTGAGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACT
* *
19138 TGTGAGCTTTTG-AAGATATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACT
19167 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
19195 TGTGGGCTTTGAAAGGGTGCTACTGAC
1 TGTGGGCTTTGAAAGGATGCCACTGAC
19222 ATGCCACTAA
Statistics
Matches: 3468, Mismatches: 550, Indels: 366
0.79 0.13 0.08
Matches are distributed among these distances:
23 2 0.00
24 2 0.00
25 35 0.01
26 209 0.06
27 526 0.15
28 1931 0.56
29 564 0.16
30 123 0.04
31 24 0.01
32 33 0.01
33 5 0.00
34 1 0.00
35 7 0.00
36 2 0.00
37 1 0.00
38 3 0.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:15207 original size:56 final size:56
Alignment explanation
Indices: 14992--20095 Score: 4945
Period size: 56 Copynumber: 90.8 Consensus size: 56
14982 CACCGACTTG
* * * * * *
14992 TGTGGGCTTTAAAAGGGGATGCCACTGACTTATGGGCTTTGAAGGGGTACCACTGACT
1 TGTGGGCTTTGAAA--GGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * * * *
15050 TGTAGGC-TTAAAAGGGTGCCACTGACTTATGGGCTTTGGAAGGGTGCCATTGATT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
15105 TGTGTAGGCTTTGAAATGGTATGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTG--GGCTTTGAAA-GG-ATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
15165 TGTGGGCTTTGAAAGGATGCCGCTGACTTTTGGGCTTTGAAAGAATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * ** *
15221 TATGGGCTTTG-AAGGGTGCCACTGACTTGT-GGCTTTGAAAATATGCCACTAACA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
15275 TGTGGGCTTT-AAAAGATGCCACTGACTTGTGGTCTTTTG-AAGAGATGCCACTGGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACT-AACT
*
15332 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * ** *
15389 TGTAGGCTTTGAAAATG-TGGCACTGACTTGTGGGCTTTGAAAATATG-CACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
15444 TGTAGGCTTTTG-AAGAGATGCCACTGACTTGTGAGC-TTGAAAAGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
15500 TATGGGCTTTGAAAGGATGCCACTAACTTAG-GGGCATTGAAAGG-TGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTT-GTGGGCTTTGAAAGGATGCCACTAACT
* * * *
15555 TGTGGCCTTTGAAAAGATGCCACTGACTTGTGGGCTTTAAAAGGATACCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* ** * * *
15611 TGT-GGCTTTGAAAGGGTGTTACT-AATTGT-GGCTTTAAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * *
15664 TGTGGGCGTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAAAGTTACCA-TTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
15719 TGT-GGCTTTTAAAGAGACTG-CACTAACTTGTGGTCTTTCG-AAGAGATGTCACTAACT
1 TGTGGGCTTTGAAAG-GA-TGCCACTGACTTGTGGGCTTT-GAAAG-GATGCCACTAACT
* * * *
15776 TGTGGGCTTTGAAAGGATGCCACTAACTTGT-AG-TTTTAAAGGGTGCCACTGAA--
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACT-AACT
* * *
15829 TGTGGGC-TTGAAAAGATGCCATTGAC-TGTTGGCTTTTTG-AAGAGATGCCA-TAGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC--TTTGAAAG-GATGCCACTA-ACT
* *
15885 TGTGGGCTTTGAAAGGATGCCACT-ACTTATGGGCTCTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
15940 TGTGGGCTTTGAAAGCATGCCACTG-CTTGTGGGC-TTGAAAAGATCGCCACTTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGAT-GCCAC-TAACT
* * * *
15996 TGTGGGCTCTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCT-TTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * *
16054 TGTGGTCTTTTG-AAGAGATGCCACTAACTTGTGGG-TTTGAAAAGATGTCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * *
16110 TGTGGGCTTTGAAAGGGTGCCATTCATTTATGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* ** *
16166 TATGAGTTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAA-GTTGCCACTAAC-
1 TGTG-GGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
16221 TGTGCGCTTTGTAATGATACCACTGACTTGTGAGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
16277 TGTGGGCTTTGAAAGGGTGTCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * ** *
16333 TGTGGGC-TTGAAAAGAAGCCATTAAC-T-TAAGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTAACT
* * * * *
16386 TGTGGGTTTTGAAAGGATACCACTAACTTATGGTCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
** * * *
16443 TGTGTTCTTTTG-AAGAGATGCCACTAACCTGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
16500 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
** * *
16556 TGTGGGCTTTGAAAATATGCCACTGACTTATGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * *
16613 TGTAGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
16669 TGT-GGTTTTCGAAAAGATGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* ** *
16725 TGTGGTCTTCAAAAATGCCACTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTT-TGAAA-G-GA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
16785 TGTGGGCTTTCATA-GAGTGCTACTAACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
16841 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGACTTTGAAAGAATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
16897 TGTGGGCTTTGAAAGGGTGCCACTTACTTATGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
16953 TGTGGGCTTTGAAAGGATGCCACTAACTTATGGGATTTAAAAGGGTACCACTAAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
17008 TGTGGCCTTAGAAA-AATGCCACTAACTTGTGAGCTTTTG-AAGAGATGCAACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * * * *
17064 TGTAGGCTTTCAAAGGATGCTACTAAC-TGTAGGCTTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATGCCACTAACT
* *
17119 TGTGGGCTTTG-AAGGATGCCACTAACTTGT-GGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
*
17174 TGTGAGCTTTGAAAGGATGCCACT---TGTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT-TGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
17228 TATGGGCATTGAAAAGG-TCACCACTGACTTGTGGGC-TTGAAAAGATGCCACTGACT
1 TGTGGGCTTTG-AAAGGAT-GCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * ***
17284 TGTGGGCTTTAAAAGGATACCACTAACTTGTGGGCTTTGAAAGGGTATTACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
17340 TGTGGGCTTTAAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
17396 TGTGGGCTTTGAAAAG-TGCCAGT-ACTTGTGGGCTTTTAAAGAGATG-CACTACAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACT--AACT
*
17452 TGTGGTCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * * *
17509 TGTAGGCTTT-AAAGGGTGTCACTGACTTGTGGGTTTTAAAAAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * *
17564 TGTGGGTTTTTAAAGAGATGCCATTGACTTGTGGGTTTTTAAAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTAACT
*
17622 TGTGGGGCTTTG-AAGGATGCCACTGACTTATGGGC-TTGAAAGGATGCCACTAACT
1 TGT-GGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
17677 TGTGGGCTTTGAAAGGGTGTCACTGACTTGTGGGCTTTGAAA-GATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
17732 TGTGGGCTTTGAAAGGATGCCACTAACCTGTGGTCTTTTG-AAGAGATACCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
* * * * * *
17789 TGTGGTCTTTTG-AAGAGATGCCACTAACTTGTGTGTTTTGAAAAGATGTCACTAACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * *
17846 TATGGGTTTTGAAAGGGTGCCACTCA-TT-TAGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * ** * *
17900 TGTGGGCTTTTGAAAAAGATGCCATTGACTTGTTTGCTTTGAAAAGATGCCACTAACC
1 TGTGGGC-TTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
17958 TGTGGGC-TT-AAAGGATACCACTGAC-TGTGAGTTTTG-AA-GATGCCACTAAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
18008 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCGTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
18064 TGT-GGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGATAA-GATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA-AAGGATGCCACTAACT
* *
18119 TGTGGGCTTTGAAAGGATGCCACTGACTTAG-GGTCTTTTG-AAGAGATGCCACTGAC-
1 TGTGGGCTTTGAAAGGATGCCACTGACTT-GTGGGC-TTTGAAAG-GATGCCACTAACT
** * * *
18175 TGTGTTCTTTG-AAGAGATGCCACTAACTTGTGTGATTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
18231 TGTGGGCTTTAAAAGGGTGCCGCTGACTTGTGGGCTTTGAAATGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
*
18287 TGTGGGCTTTTG-AAGAGATGCCACTGACTTGTGGGCTTTTG-AA-GATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGC-TTTGAAAGGATGCCACTAACT
* * *
18343 TGTGGGCTTTGAAAGGATGCCACTGACTTGTAGGCTTGGAAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
18399 TGT-GGTTTTCGAAAAGATGCCACTGACTTGTGGGTTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
18455 TGTGGGCTTTGAAA-GAGTGCTACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
18511 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTCGAAAGGATGCCACTTACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
18567 TGTGGGCTTTGAAAGGGTGCCACT-ACCTTGTGGGCTTTGAAAGGAAGCGATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGA-CTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
18623 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
18679 TGTGGGCTTTGGAAA-AATGGCACTAACTTGTGAGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGC-TTTGAAAG-GATGCCACTAACT
*
18736 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA----G-----G--ATGCCACTAA
18801 CT
55 CT
* * *
18803 TGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAAGATGTCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
18859 TGTGGGC-TTGAAAGGATGCCACTAACTTGTAGGCTTT-AAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
18913 TGTGGGCTTTGAAAAGATTCCATTGACTTGTGGGTTTTTG-AAGAGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGG-CTTTGAAAG-GATGCCACTAACT
* * *
18970 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
19026 TGTGGAG-TTTGAAAAGAAGCCATTAACTTATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGG-GCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * *
19082 TGTGGGCTTTAAAAGGGTACCATTGACTTGTGAGCTTTGGAAA-AATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTAACT
* * *
19138 TGTGAGCTTTTG-AAGATATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGC-TTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
19195 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAA-GAGTGCCACTG
1 TGTGGGCTTTGAAA----G-----G--ATGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTA
19259 ACT
54 ACT
* *
19262 TGTGGGCTTTGAAAAGATGTCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
19318 TGTAGGCTTT-AAAGGGTGCTACTGACTTGTGGGCTTTGAAAAGATGCCA-TGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
19372 TGTGGGTTTTG-AAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
19428 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAAGCCATTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * * * * *
19484 TGTGGGCTTTGAAAGGATGCCAGTAATTTGTGGGCTTTAAAAGGGTACCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
19540 TGTGGGCTTTGGAAA-AATGCCACT-ACTTGTGAGCTTTG-AAGAGATGCCACTGACT
1 TGTGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTTGAAAG-GATGCCACTAACT
19595 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAA
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAA----G-----G--ATGCCACTAA
19660 CT
55 CT
* *
19662 TGTGGGCTTTGAAA-GAGTGCCACTGACTTGTGGGCTTTGAAAGGACGCCACTGA-T
1 TGTGGGCTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
19717 TGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCTTAGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * * *
19773 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGAGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
*
19829 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTG-AAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * *
19884 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* *
19940 TGTGGGCTTTGAAAGGATGCCACTGATTTGTGGGCTTTGAAAGGATGCCACCAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
* * * *
19996 TGTGGGCTTTGAAAGGGTGCCACTGACTTTTGGTCTTTGAAAAGG-TGTCC-CTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAGGATG-CCACTAACT
* ** * *
20052 TGTGGTCTTTGAAAGGATGCCTTTGACTTGTGGTCTTTAAAAGG
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGG
20096 GCTGCCACGG
Statistics
Matches: 4219, Mismatches: 597, Indels: 463
0.80 0.11 0.09
Matches are distributed among these distances:
50 7 0.00
51 17 0.00
52 33 0.01
53 79 0.02
54 328 0.08
55 936 0.22
56 1772 0.42
57 537 0.13
58 198 0.05
59 62 0.01
60 88 0.02
61 3 0.00
63 1 0.00
65 2 0.00
66 6 0.00
67 150 0.04
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (56 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACT
Found at i:15464 original size:84 final size:84
Alignment explanation
Indices: 14992--20072 Score: 4668
Period size: 84 Copynumber: 60.2 Consensus size: 84
14982 CACCGACTTG
* * * * * * *
14992 TGTGGGCTTT-AAAAGGGGATGCCACTGACTTATGGGCTTTGAAGGGGTACCACTGACTTGTAGG
1 TGTGGGCTTTGAAAA---GATGCCACTAACTTGTGGGCTTTGAA-AGATGCCACTAACTTGTGGG
*
15056 C-TT-AAAAGGGTGCCACTGACT
62 CTTTGAAAAGGATGCCACTGACT
* * * * * * * * *
15077 TATGGGCTTTGGAAGGGTGCCATTGATTTGTGTAGGCTTTGAAATGGTATGCCATTGACTTGTGG
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTG--GGCTTTGAAA--G-ATGCCACTAACTTGTGG
* *
15142 GCTTTG-AAAGGGTGCCACTAACT
61 GCTTTGAAAAGGATGCCACTGACT
* * * * *
15165 TGTGGGCTTTGAAAGGATGCCGCTGACTTTTGGGCTTTGAAAGAATGCCACTAACTTATGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAG-ATGCCACTAACTTGTGGGCTT
*
15230 TG--AAGGGTGCCACTGACT
65 TGAAAAGGATGCCACTGACT
* * * * *
15248 TGT-GGCTTTGAAAATATGCCACTAACATGTGGGCTTTAAAAGATGCCACTGACTTGTGGTCTTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGATGCCACTAACTTGTGGGC-TT
*
15312 TGAAGA-GATGCCACTGGACT
65 TGAAAAGGATGCCACT-GACT
* * * *
15332 TGTGGTCTTTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCT
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCT
* *
15397 TTGAAAATG-TGGCACTGACT
64 TTGAAAAGGATGCCACTGACT
* * * * *
15417 TGTGGGCTTTGAAAATATG-CACTGACTTGTAGGCTTTTGAAGAGATGCCACTGACTTGTGAGC-
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAA-AGATGCCACTAACTTGTGGGCT
15480 TTGAAAA-GATGCCACTGACT
64 TTGAAAAGGATGCCACTGACT
* * * * *
15500 TATGGGCTTTGAAAGGATGCCACTAACTTAG-GGGCATTGAAAGGTGCCACTAACTTGTGGCCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTT-GTGGGCTTTGAAAGATGCCACTAACTTGTGGGCTT
15564 TGAAAA-GATGCCACTGACT
65 TGAAAAGGATGCCACTGACT
* * **
15583 TGTGGGCTTT-AAAAGGATACCACTAACTTGT-GGCTTTGAAAGGGTGTTACTAA-TTGT-GGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCT
* *
15644 TT-AAAAAGATGCCACTAACT
64 TTGAAAAGGATGCCACTGACT
* * * * * * * *
15664 TGTGGGCGTTGAAAGGGTGCCACTGACTTGTGGGTTTTGAAAAGTTACCA-TTACTTGT-GGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTG-AAAGATGCCACTAACTTGTGGGCTT
* *
15727 T-TAAAGAGACTG-CACTAACT
65 TGAAAAG-GA-TGCCACTGACT
* * * *
15747 TGTGGTCTTTCGAAGAGATGTCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGT-AG-T
1 TGTGGGCTTT-GAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCT
* * *
15810 TT-TAAAGGGTGCCACTGA-A
64 TTGAAAAGGATGCCACTGACT
* * *
15829 TGTGGGC-TTGAAAAGATGCCATTGAC-TGTTGGCTTTTTGAAGAGATGCCA-TAGACTTGTGGG
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGC--TTTGAA-AGATGCCACTA-ACTTGTGGG
15891 CTTTG-AAAGGATGCCACT-ACT
62 CTTTGAAAAGGATGCCACTGACT
* * * *
15912 TATGGGCTCTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGCATGCCACT-GCTTGTGGGC-T
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAG-ATGCCACTAACTTGTGGGCTT
*
15975 TGAAAA-GATCGCCACTTAACT
65 TGAAAAGGAT-GCCAC-TGACT
* * * * *
15996 TGTGGGCTCTTGAAAGGATGCCACTAACCTGTGGTCTTTTGAAGAGATGCCACTGACTTGTGGTC
1 TGTGGGCT-TTGAAAAGATGCCACTAACTTGTGGGC-TTTGAA-AGATGCCACTAACTTGTGGGC
* *
16061 TTTTGAAGA-GATGCCACTAACT
63 -TTTGAAAAGGATGCCACTGACT
* * * * * *
16083 TGTGGG-TTTGAAAAGATGTCACTAACTTGTGGGCTTTGAAAGGGTGCCATTCATTTATGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
16147 TGAAAA-GATGCCACTGACT
65 TGAAAAGGATGCCACTGACT
* ** * * * *
16166 TATGAGTTTTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAGTTGCCACTAAC-TGTGCGCTT
1 TGTG-GGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGATGCCACTAACTTGTGGGCTT
* * *
16230 TG-TAATGATACCACTGACT
65 TGAAAAGGATGCCACTGACT
* * * * *
16249 TGTGAGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGTCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
*
16314 TG-AAAGGATGCCACTAACT
65 TGAAAAGGATGCCACTGACT
* * ** * *
16333 TGTGGGC-TTGAAAAGAAGCCATTAAC-T-TAAGCTTTGATAAGATGCCACTGACTTGTGGGTTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGA-AAGATGCCACTAACTTGTGGGCTT
* *
16395 TG-AAAGGATACCACTAACT
65 TGAAAAGGATGCCACTGACT
* * * ** * *
16414 TATGGTCTTTTGAAGAGATGCCACTAACTTGTGTTCTTTTGAAGAGATGCCACTAACCTGTGGGT
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAA-AGATGCCACTAACTTGTGGGC
*
16479 TTTG-AAAGGATGCCACTAACT
63 TTTGAAAAGGATGCCACTGACT
* * * * *
16500 TGTGGGCTTT-AAAAGGGTGCCACTGACTTGTGGGCTTTAAAAGGGTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCT
*
16564 TTGAAAA-TATGCCACTGACT
64 TTGAAAAGGATGCCACTGACT
* * * * *
16584 TATGGGCTTTTGAAGAGATGCCACTGACTTGTAGGCTTTGAAAGGATGCCACTAACTTGTAGGCT
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCT
* *
16649 TTG-AAAGGGTGCCACTAACT
64 TTGAAAAGGATGCCACTGACT
* * * * *
16669 TGT-GGTTTTCGAAAAGATGCCATTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGTCT
1 TGTGGGCTTT-GAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCT
** *
16733 TCAAAAATGCCACTGCCACTGACT
64 TTGAAAA-G-GA-TGCCACTGACT
* * * *
16757 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTCATAGAGTGCTACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGA-TGCCACTAACTTGTGGGCTT
16822 TGAAAA-GATGCCACTGACT
65 TGAAAAGGATGCCACTGACT
* * *
16841 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGACTTTGAAAGAATGCCACTTACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAG-ATGCCACTAACTTGTGGGCTT
* *
16906 TG-AAAGGGTGCCACTTACT
65 TGAAAAGGATGCCACTGACT
* * * * *
16925 TATGGGCTTTGAAAAGAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGATT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
* * *
16990 T-AAAAGGGTACCACTAAC-
65 TGAAAAGGATGCCACTGACT
* * * * *
17008 TGTGGCCTTAGAAAA-ATGCCACTAACTTGTGAGCTTTTGAAGAGATGCAACTAACTTGTAGGCT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAA-AGATGCCACTAACTTGTGGGCT
* * *
17072 TT-CAAAGGATGCTACTAAC-
64 TTGAAAAGGATGCCACTGACT
* * * *
17091 TGTAGGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTGAAGGATGCCACTAACTTGT-GGCTTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGATGCCACTAACTTGTGGGC-TT
*
17155 TGAAGA-GATGCCACTGACT
65 TGAAAAGGATGCCACTGACT
* * * *
17174 TGTGAGCTTTGAAAGGATGCCACT---TGTGTGGGCTTTGAAAGGATGCCACTAACTTATGGGCA
1 TGTGGGCTTTGAAAAGATGCCACTAACT-TGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCT
*
17236 TTGAAAAGG-TCACCACTGACT
64 TTGAAAAGGAT-GCCACTGACT
* * *
17257 TGTGGGC-TTGAAAAGATGCCACTGACTTGTGGGCTTTAAAAGGATACCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
* * *
17321 TGAAAGGGTAT--TACTAACT
65 TGAAAAGG-ATGCCACTGACT
* *
17340 TGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCT
*
17404 TTGAAAA-G-TGCCAGT-ACT
64 TTGAAAAGGATGCCACTGACT
* * *
17422 TGTGGGCTTTTAAAGAGATG-CACTACAACTTGTGGTCTTTTGAAGAGATGCCACTGACTTGTGG
1 TGTGGGCTTTGAAA-AGATGCCACT--AACTTGTGGGC-TTTGAA-AGATGCCACTAACTTGTGG
*
17486 GCTTTG-AAAGGATGCCACTAACT
61 GCTTTGAAAAGGATGCCACTGACT
* * * * * * * * *
17509 TGTAGGCTTT-AAAGGGTGTCACTGACTTGTGGGTTTTAAAAAGATGCCATTGACTTGTGGG-TT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTT-GAAAGATGCCACTAACTTGTGGGCTT
** *
17572 TTTAAAGAGATGCCATTGACT
65 TGAAAAG-GATGCCACTGACT
* * * * * * *
17593 TGTGGGTTTTTAAAGAGATGCCATTGACTTGTGGGGCTTTGAAGGATGCCACTGACTTATGGGC-
1 TGTGGGCTTTGAAA-AGATGCCACTAACTTGT-GGGCTTTGAAAGATGCCACTAACTTGTGGGCT
*
17657 TTG-AAAGGATGCCACTAACT
64 TTGAAAAGGATGCCACTGACT
* * * *
17677 TGTGGGCTTTGAAAGGGTGTCACTGACTTGTGGGCTTTGAAAGATGCCACTAACTTGTGGGCTTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGATGCCACTAACTTGTGGGCTTT
* *
17742 G-AAAGGATGCCACTAACC
66 GAAAAGGATGCCACTGACT
* * * * * * *
17760 TGTGGTCTTTTGAAGAGATACCACTGACTTGTGGTCTTTTGAAGAGATGCCACTAACTTGTGTGT
1 TGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAA-AGATGCCACTAACTTGTGGGC
* *
17825 TTTGAAAA-GATGTCACTAACT
63 TTTGAAAAGGATGCCACTGACT
* * * * * * *
17846 TATGGGTTTTGAAAGGGTGCCACTCA-TT-TAGGCTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTG-AAAGATGCCACTAACTTGTGGGC-T
* *
17909 TTGAAAAAGATGCCATTGACT
64 TTGAAAAGGATGCCACTGACT
** * * * * *
17930 TGTTTGCTTTGAAAAGATGCCACTAACCTGTGGGC-TT-AAAGGATACCACTGAC-TGTGAGTTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
*
17992 TG--AA-GATGCCACTAAC-
65 TGAAAAGGATGCCACTGACT
* * *
18008 TGTGGGCTTT-AAAAGGGTGCCACTGACTTGTGGGCGTTGAAAGGATGCCACTAACTTGT-GGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCT
*
18071 TTG-AAAGGGTGCCACTGACT
64 TTGAAAAGGATGCCACTGACT
* * * *
18091 TGTGGGCTTTGATAAGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTAG-GGTCT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTT-GTGGGC-
*
18155 TTTGAAGA-GATGCCACTGAC-
63 TTTGAAAAGGATGCCACTGACT
** * * *
18175 TGTGTTCTTTGAAGAGATGCCACTAACTTGTGTGATTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
* *
18240 T-AAAAGGGTGCCGCTGACT
65 TGAAAAGGATGCCACTGACT
* * *
18259 TGTGGGCTTTGAAATGATGCCACTGACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGC-TTTGAA-AGATGCCACTAACTTGTGGGC-
18324 TTTG--AA-GATGCCACTGACT
63 TTTGAAAAGGATGCCACTGACT
* * * * * *
18343 TGTGGGCTTTGAAAGGATGCCACTGACTTGTAGGCTTGGAAAGGGTGCCACTAACTTGT-GGTTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
18407 TCGAAAA-GATGCCACTGACT
65 T-GAAAAGGATGCCACTGACT
* * * *
18427 TGTGGGTTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGAGTGCTACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGA-TGCCACTAACTTGTGGGCTT
18492 TGAAAA-GATGCCACTGACT
65 TGAAAAGGATGCCACTGACT
* * *
18511 TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTCGAAAGGATGCCACTTACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
*
18576 TG-AAAGGGTGCCACT-ACCT
65 TGAAAAGGATGCCACTGA-CT
* * * *
18595 TGTGGGCTTTGAAAGGAAGCGATTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
* * *
18660 T-AAAAGGGTACCATTGACT
65 TGAAAAGGATGCCACTGACT
* * *
18679 TGTGGGCTTTGGAAAA-ATGGCACTAACTTGTGAGCTTTTGAAGAGATGCCACTGACTTGTGGGC
1 TGTGGGCTTT-GAAAAGATGCCACTAACTTGTGGGC-TTTGAA-AGATGCCACTAACTTGTGGGC
18743 TTTGAAAA-GATGCCACTGACT
63 TTTGAAAAGGATGCCACTGACT
*
18764 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGA
1 TGTGGGCTTTGAAA-------A--G--ATGCCACTAACTTGTGGGCTTTGAAAGA-TGCCACTAA
*
18829 CTTGTGGGCTTTGAAAA-GATGTCACTGACT
54 CTTGTGGGCTTTGAAAAGGATGCCACTGACT
* * * *
18859 TGTGGGC-TTGAAAGGATGCCACTAACTTGTAGGCTTT-AAAGGGTGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
* *
18922 TGAAAA-GATTCCATTGACT
65 TGAAAAGGATGCCACTGACT
* * * *
18941 TGTGGGTTTTTGAAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGGG-CTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCT
*
19006 TTG-AAAGGGTGCCACTGACT
64 TTGAAAAGGATGCCACTGACT
* * *
19026 TGTGGAG-TTTGAAAAGAAGCCATTAACTTATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCT
1 TGTGG-GCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCT
* * *
19090 TT-AAAAGGGTACCATTGACT
64 TTGAAAAGGATGCCACTGACT
* * * *
19110 TGTGAGCTTTGGAAAA-ATGCCACTAACTTGTGAGCTTTTGAAGATATGCCACTGACTTGTGGGC
1 TGTGGGCTTT-GAAAAGATGCCACTAACTTGTGGGC-TTTGAA-AGATGCCACTAACTTGTGGGC
19174 TTTG-AAAGGATGCCACTGACT
63 TTTGAAAAGGATGCCACTGACT
*
19195 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGA
1 TGTGGGCTTTGAAA-------A--G--ATGCCACTAACTTGTGGGCTTTGAAAGA-TGCCACTAA
*
19260 CTTGTGGGCTTTGAAAA-GATGTCACTGACT
54 CTTGTGGGCTTTGAAAAGGATGCCACTGACT
* * * * *
19290 TGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTT-AAAGGGTGCTACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
19354 TGAAAA-GATGCCA-TGACT
65 TGAAAAGGATGCCACTGACT
* * * *
19372 TGTGGGTTTTGAAGAGATGCCATTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
*
19437 TG-AAAGGGTGCCACTGACT
65 TGAAAAGGATGCCACTGACT
* * * *
19456 TGTGGGCTTTGAAAAGAAGCCATTAACTTGTGGGCTTTGAAAGGATGCCAGTAATTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
* * *
19521 T-AAAAGGGTACCATTGACT
65 TGAAAAGGATGCCACTGACT
* *
19540 TGTGGGCTTTGGAAAA-ATGCCACT-ACTTGTGAGCTTTGAAGAGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTT-GAAAAGATGCCACTAACTTGTGGGCTTTGAA-AGATGCCACTAACTTGTGGGCT
19603 TTG-AAAGGATGCCACTGACT
64 TTGAAAAGGATGCCACTGACT
*
19623 TGTGGGCTTTGAAAGGGTGCTACTGACATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGA
1 TGTGGGCTTTGAAA-------A--G--ATGCCACTAACTTGTGGGCTTTGAAAGA-TGCCACTAA
*
19688 CTTGTGGGCTTTG-AAAGGACGCCACTGA-T
54 CTTGTGGGCTTTGAAAAGGATGCCACTGACT
* * * *
19717 TGTGGGCTTT-AAAAGGGTGCCACTGACTTGTGGGCTTAGAAAAGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTG-AAAGATGCCACTAACTTGTGGGCT
*
19781 TTG-AAAGGATGCCACTAACT
64 TTGAAAAGGATGCCACTGACT
* * * *
19801 TGTGAGCTTT-AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTG-AAAGATGCCACTAACTTGTGGGCT
*
19865 TTG--AAGGATGCCACTAACT
64 TTGAAAAGGATGCCACTGACT
* *
19884 TGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTG-AAAGATGCCACTAACTTGTGGGCTT
*
19949 TG-AAAGGATGCCACTGATT
65 TGAAAAGGATGCCACTGACT
* * * * * *
19968 TGTGGGCTTTGAAAGGATGCCACCAACTTGTGGGCTTTGAAAGGGTGCCACTGACTTTTGGTCTT
1 TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAA-GATGCCACTAACTTGTGGGCTT
20033 TGAAAAGG-TGTCC-CTGACT
65 TGAAAAGGATG-CCACTGACT
* *
20052 TGTGGTCTTTGAAAGGATGCC
1 TGTGGGCTTTGAAAAGATGCC
20073 TTTGACTTGT
Statistics
Matches: 4204, Mismatches: 554, Indels: 477
0.80 0.11 0.09
Matches are distributed among these distances:
77 4 0.00
78 25 0.01
79 18 0.00
80 41 0.01
81 158 0.04
82 425 0.10
83 891 0.21
84 1486 0.35
85 493 0.12
86 230 0.05
87 76 0.02
88 110 0.03
89 15 0.00
91 2 0.00
93 3 0.00
94 33 0.01
95 156 0.04
96 38 0.01
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (84 bp):
TGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAGATGCCACTAACTTGTGGGCTTT
GAAAAGGATGCCACTGACT
Found at i:18806 original size:39 final size:39
Alignment explanation
Indices: 18752--18829 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
18742 CTTTGAAAAG
* * *
18752 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
18791 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
18830 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:19237 original size:39 final size:39
Alignment explanation
Indices: 19183--19260 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
19173 CTTTGAAAGG
* * *
19183 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
19222 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
19261 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:19263 original size:28 final size:29
Alignment explanation
Indices: 19222--20118 Score: 808
Period size: 28 Copynumber: 31.8 Consensus size: 29
19212 TGCTACTGAC
*
19222 ATGCCACTAACTTGTGGGCTTTGAAAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
19251 -TGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
19278 ATGTCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
19306 ATGCCACTAACTTGTAGGCTTT-AAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
19333 GTGCTACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
19361 ATGCCA-TGACTTGTGGGTTTTG-AAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
19388 ATGCCATTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
19416 ATGCCACTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
19444 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
19472 AAGCCATTAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *
19500 ATGCCAGTAATTTGTGGGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
19528 GTACCATTGACTTGTGGGCTTTGGAAA-A-
1 ATGCCACTGACTTGTGGGCTTT-GAAAGAG
*
19556 ATGCCACT-ACTTGTGAGCTTTG-AAGAG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
19583 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
19611 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *** *** **
19639 GTGCTACTGACATG-CCACTAACTTGTGGGCT
1 ATGCCACTGACTTGTGGGCT---TTGAAAGAG
* ** * ** **
19670 TTGAAAGAGTGCCAC-TGACTTGTGGGCTTTGAA-AGG
1 ATG--CCACTG--ACTTG---TG-GGCTTTGAAAGA-G
* *
19706 ACGCCACTGA-TTGTGGGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
19733 GTGCCACTGACTTGTGGGCTTAGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
19761 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
19789 ATGCCACTAACTTGTGAGCTTTAAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
19817 GTGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
19845 ATGCCACTGACTTGTGGGCTTTG-AAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
19872 ATGCCACTAACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
19900 ATGCCACTGACTTGTGGGCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
19928 ATGCCACTGACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
*
19956 ATGCCACTGATTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
**
19984 ATGCCACCAACTTGTGGGCTTTGAAAG-G
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * *
20012 GTGCCACTGACTTTTGGTCTTTGAAA-AG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* *
20040 GTGTCC-CTGACTTGTGGTCTTTGAAAG-G
1 ATG-CCACTGACTTGTGGGCTTTGAAAGAG
** * * *
20068 ATGCCTTTGACTTGTGGTCTTTAAAAGGG
1 ATGCCACTGACTTGTGGGCTTTGAAAGAG
* * * *
20097 CTGCCACGGAGTTGTGGTCTTT
1 ATGCCACTGACTTGTGGGCTTT
20119 ATAAGGTTGC
Statistics
Matches: 720, Mismatches: 104, Indels: 88
0.79 0.11 0.10
Matches are distributed among these distances:
25 2 0.00
26 4 0.01
27 106 0.15
28 555 0.77
29 31 0.04
30 4 0.01
31 2 0.00
32 3 0.00
33 3 0.00
34 5 0.01
35 2 0.00
36 3 0.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (29 bp):
ATGCCACTGACTTGTGGGCTTTGAAAGAG
Found at i:19665 original size:39 final size:39
Alignment explanation
Indices: 19611--19688 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
19601 CTTTGAAAGG
* * *
19611 ATGCCACTGACTTGTGGGCTTTGAAAGGGTGCTACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
19650 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
1 ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
19689 TTGTGGGCTT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
ATGCCACTAACTTGTGGGCTTTGAAAGAGTGCCACTGAC
Found at i:20138 original size:28 final size:28
Alignment explanation
Indices: 19661--20179 Score: 187
Period size: 28 Copynumber: 18.6 Consensus size: 28
19651 TGCCACTAAC
* * * *
19661 TTGTGGGCTTTGAAAGAG-TGCCACTGAC
1 TTGTGGTCTTTAAAAG-GTTGCCACGGAG
* * ** *
19689 TTGTGGGCTTTGAAAGGACGCCACTGA-
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * *
19716 TTGTGGGCTTTAAAAGGGTGCCACTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * * *
19744 TTGTGGGC-TTAGAAAAGATGCCACTGAC
1 TTGTGGTCTTTA-AAAGGTTGCCACGGAG
* * * ** *
19772 TTGTGGGCTTTGAAAGGATGCCACTAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
19800 TTGTGAG-CTTTAAAAGGGTGCCACTGAC
1 TTGTG-GTCTTTAAAAGGTTGCCACGGAG
* * * *
19828 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * ** *
19856 TTGTGGGCTTT-GAAGGATGCCACTAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * *
19883 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * *
19911 TTGTGGGCTTTGAAAA-GATGCCACTGAC
1 TTGTGGTCTTT-AAAAGGTTGCCACGGAG
* * * * *
19939 TTGTGGGCTTTGAAAGGATGCCACTGAT
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * ** *
19967 TTGTGGGCTTTGAAAGGATGCCACCAAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * * * *
19995 TTGTGGGCTTTGAAAGGGTGCCACTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
20023 TTTTGGTCTTTGAAAAGG-TGTCC-CTGAC
1 TTGTGGTCTTT-AAAAGGTTG-CCACGGAG
* * *** *
20051 TTGTGGTCTTTGAAAGGATGCCTTTGAC
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
*
20079 TTGTGGTCTTTAAAAGGGCTGCCACGGAG
1 TTGTGGTCTTTAAAA-GGTTGCCACGGAG
*
20108 TTGTGGTCTTTATAAGGTTGCCACGGAG
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* *
20136 TTGTGGAC-TTAAAAGGTTGCCATGGAG
1 TTGTGGTCTTTAAAAGGTTGCCACGGAG
* * *
20163 TTATGGACTTAAAAAGG
1 TTGTGGTCTTTAAAAGG
20180 AATGCCACTA
Statistics
Matches: 430, Mismatches: 44, Indels: 34
0.85 0.09 0.07
Matches are distributed among these distances:
26 2 0.00
27 85 0.20
28 305 0.71
29 38 0.09
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
TTGTGGTCTTTAAAAGGTTGCCACGGAG
Done.