Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold558
Parameters: 2 7 7 80 10 50 1000
Length:  39609

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
133--179
22
2.2
21
88
3
67
65
0
23
10
1.23
1287--1327
20
2.0
21
85
4
57
51
2
0
46
1.14
1277--1332
25
2.2
26
81
9
71
51
1
0
46
1.11
1850--1875
3
8.7
3
100
0
52
69
0
0
30
0.89
2320--2351
3
10.7
3
93
0
55
65
0
0
34
0.93
1723--4150
480
5.0
478
91
5
3932
40
10
10
37
1.75
2668--2735
33
2.1
33
100
0
136
27
23
5
42
1.77
2831--2868
3
12.7
3
100
0
76
68
0
0
31
0.90
1723--4150
993
2.5
958
92
4
4040
40
10
10
37
1.75
3313--3347
3
11.7
3
100
0
70
68
0
0
31
0.90
3793--3827
3
11.7
3
100
0
70
68
0
0
31
0.90
5485--5535
27
1.9
27
84
4
68
47
1
3
47
1.32
6059--6100
2
21.0
2
95
0
75
47
0
2
50
1.14
8080--8112
3
11.3
3
93
6
59
69
0
0
30
0.88
9733--9781
25
2.0
25
83
0
62
24
6
12
57
1.58
12519--12570
21
2.5
21
73
17
54
55
0
0
44
0.99
18419--18452
15
2.3
15
85
5
52
88
0
11
0
0.52
21721--21745
1
25.0
1
100
0
50
100
0
0
0
0.00
23660--23702
21
2.0
21
82
8
52
65
4
11
18
1.42
24910--25001
21
4.4
21
91
0
139
50
13
27
9
1.72
31899--31925
14
1.9
14
100
0
54
74
3
0
22
0.98
36428--36475
26
2.0
25
84
12
64
35
12
10
41
1.77

Tables:   1

The End!