genome.fa.s560.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold560
Parameters: 2 7 7 80 10 50 1000
Length:  122116

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104--146	22	2.0	22	90	0	68	60	0	6	32	1.23
2052--2121	21	3.1	23	80	15	67	44	1	0	54	1.09
15957--16004	17	2.8	17	72	12	53	37	4	0	58	1.18
19102--19135	16	2.1	16	89	10	52	32	0	0	67	0.91
22125--22185	30	2.0	31	81	12	74	39	3	0	57	1.15
22793--23247	106	4.3	107	65	16	300	55	4	3	35	1.40
22835--22945	56	1.9	58	87	7	165	56	4	1	36	1.30
23153--23263	56	1.9	58	85	7	156	55	4	2	36	1.34
22728--23368	318	2.0	318	97	0	1201	55	5	4	34	1.42
22793--23314	106	4.9	104	66	14	251	55	4	3	36	1.39
26383--26563	34	5.4	34	86	3	240	39	25	7	26	1.83
31014--31126	34	3.4	34	82	6	133	44	22	5	28	1.74
36711--36747	20	1.9	19	89	10	58	29	5	32	32	1.80
37494--37560	33	2.0	32	83	11	82	41	1	0	56	1.08
37514--37579	17	3.9	17	73	13	55	43	3	0	53	1.16
39941--39998	27	2.2	26	79	11	66	50	1	1	46	1.22
39947--39999	27	2.0	27	85	7	72	47	1	3	47	1.31
45676--45713	11	3.4	11	83	16	51	26	0	2	71	1.00
46046--46092	21	2.2	22	84	3	60	38	4	2	55	1.31
50856--50951	27	3.7	27	87	4	135	25	12	20	41	1.87
51435--51465	2	15.5	2	93	0	53	51	3	0	45	1.17
51518--51546	7	4.1	7	100	0	58	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51514--51563	21	2.4	21	74	12	50	64	2	0	34	1.05
51580--51612	17	1.9	17	88	11	50	39	9	0	51	1.34
52852--52933	7	11.4	7	67	14	51	69	0	1	29	0.96
52864--52900	17	2.2	17	90	4	58	72	0	2	24	0.97
52857--52930	13	5.7	13	76	16	57	68	0	1	29	0.97
56174--56214	21	2.0	20	90	4	64	41	0	2	56	1.13
61713--61743	13	2.4	13	94	0	53	29	6	45	19	1.75
61845--61897	27	2.0	27	88	0	79	49	20	7	22	1.74
66380--66439	27	2.2	28	82	5	70	45	10	8	36	1.68
68869--68895	13	2.1	13	100	0	54	55	7	14	22	1.64
69665--69729	26	2.6	25	85	7	80	29	1	3	66	1.16
69671--69729	25	2.3	25	85	2	73	30	1	3	64	1.20
69692--69745	18	3.1	18	74	15	51	40	0	1	57	1.09
69711--69759	25	2.0	25	92	8	82	48	0	0	51	1.00
69779--69830	11	4.4	11	76	13	50	40	0	0	59	0.97
69750--69834	31	2.8	31	80	8	86	38	1	2	57	1.19
70393--70438	24	1.9	24	86	0	65	41	28	6	23	1.79
70433--70496	28	2.3	28	91	5	103	53	20	7	18	1.69
70443--70497	28	2.0	28	100	0	110	49	21	10	18	1.78
72401--72446	21	2.1	22	84	4	58	19	30	19	30	1.97
74958--75003	24	1.9	24	86	0	65	39	30	6	23	1.80
74998--75061	28	2.3	28	86	5	85	51	18	9	20	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77913--78720	427	1.9	427	86	1	1163	33	9	14	42	1.77
82552--82662	56	1.9	58	87	7	165	56	3	2	36	1.31
82512--82662	56	2.8	54	82	8	148	56	3	3	35	1.34
82572--82690	56	2.1	54	79	11	125	58	3	2	35	1.28
84018--84061	22	2.0	23	82	13	56	56	4	0	38	1.20
85473--85536	32	2.0	33	90	3	103	46	1	4	46	1.33
86190--86232	21	2.0	22	81	4	52	27	4	6	60	1.43
92813--92856	5	8.8	5	85	9	63	77	4	0	18	0.94
93634--93710	21	3.9	21	72	17	58	64	1	1	32	1.09
93859--93902	22	2.0	22	90	0	70	27	18	9	45	1.79
95652--95696	21	2.1	21	88	12	65	42	0	0	57	0.98
95634--95724	29	3.2	29	81	7	98	50	0	0	49	1.00
97979--98032	20	2.7	20	82	5	65	37	14	12	35	1.85
98773--98817	23	2.0	23	90	0	72	33	8	4	53	1.52
100693--100808	20	5.8	20	96	0	205	31	15	10	43	1.80
101807--101832	13	2.0	13	100	0	52	38	15	15	30	1.88
101789--101852	33	2.0	33	87	9	96	40	17	14	28	1.88
101886--101929	20	2.1	22	91	8	74	40	20	9	29	1.83
104051--104102	21	2.4	21	78	9	61	63	3	9	23	1.41
108008--108046	13	3.0	13	92	0	60	30	15	15	38	1.88
109669--109711	22	2.0	20	86	8	59	13	9	13	62	1.53
110621--110646	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110603--110666	33	2.0	33	87	9	96	40	17	14	28	1.88
110700--110743	20	2.1	22	91	8	74	40	20	9	29	1.83
112055--112103	3	16.3	3	100	0	98	67	0	0	32	0.91
113333--113378	22	2.0	23	83	4	58	34	4	4	56	1.39
113437--113520	28	2.9	29	73	10	73	42	2	2	52	1.27
114234--114290	13	4.3	13	76	12	62	64	15	7	12	1.47
117528--117581	15	3.5	15	73	16	56	75	0	0	24	0.80
117528--117582	8	7.0	8	78	10	60	74	0	0	25	0.82
118162--118223	29	2.1	30	85	5	83	56	1	1	40	1.19
119131--119181	9	5.1	10	77	15	52	70	1	0	27	0.98
120090--120122	10	3.3	10	84	16	50	48	0	0	51	1.00
120185--120218	16	2.1	16	94	0	59	55	0	0	44	0.99
121767--121852	42	2.0	46	84	13	119	27	11	11	48	1.74

Tables:   1

The End!