Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold561
Parameters: 2 7 7 80 10 50 1000
Length:  49595

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1382--4448
28
108.7
28
79
9
2547
28
29
17
25
1.97
1390--1844
27
16.4
27
78
10
352
23
30
15
30
1.95
1390--1935
55
9.8
55
81
8
486
24
30
15
29
1.96
1371--2740
57
24.3
55
82
8
579
27
29
16
27
1.97
1749--4450
57
47.8
57
84
5
3099
29
28
17
24
1.97
1694--4448
85
32.5
85
83
5
2994
29
28
17
24
1.97
4575--4652
21
3.7
21
87
3
113
37
12
15
34
1.86
4743--4795
20
2.7
20
87
0
70
24
15
16
43
1.87
7135--7267
52
2.6
51
83
3
176
31
24
9
35
1.86
7283--7482
79
2.5
79
82
4
217
25
31
16
26
1.96
13091--13117
13
2.1
13
100
0
54
29
14
14
40
1.86
13884--13937
22
2.5
22
93
3
92
33
1
12
51
1.51
13885--13947
22
2.9
22
86
9
85
33
1
9
55
1.42
15793--15826
15
2.1
16
89
10
52
23
0
0
76
0.79
16131--16155
8
3.1
8
100
0
50
88
0
12
0
0.53
19673--19709
15
2.4
16
86
13
51
70
5
5
18
1.27
20455--20492
15
2.4
17
82
13
53
57
0
0
42
0.98
20455--20492
16
2.4
16
86
8
51
57
0
0
42
0.98
20513--20541
13
2.1
14
93
6
51
55
0
3
41
1.17
26642--26672
11
2.8
11
95
0
53
67
0
0
32
0.91
27653--27714
32
1.9
33
87
9
92
50
1
0
48
1.10
29989--30047
21
2.8
21
72
10
57
33
10
11
44
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36014--36053
21
2.1
18
86
13
53
47
0
2
50
1.14
41195--41319
52
2.4
52
95
0
223
28
17
18
36
1.94
41195--41339
52
2.8
51
89
4
211
29
17
18
34
1.94
41328--41352
13
1.9
13
100
0
50
36
16
16
32
1.90
42420--42491
28
2.6
28
86
0
90
25
19
33
22
1.97
42481--42649
52
3.2
52
77
8
148
31
12
26
29
1.93
42632--42707
27
2.7
29
90
6
113
21
19
34
25
1.96
45180--45205
13
2.0
13
100
0
52
38
15
15
30
1.88
45159--45225
33
2.0
33
88
0
98
43
16
14
25
1.86
45883--46835
55
17.3
55
94
3
1604
22
20
28
28
1.98
47818--47887
1
70.0
1
79
0
68
0
4
7
88
0.62
47817--47886
14
4.9
14
84
13
90
0
5
7
87
0.68
47818--47887
33
2.2
32
89
2
104
0
4
7
88
0.62

Tables:   1

The End!