genome.fa.s562.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold562
Parameters: 2 7 7 80 10 50 1000
Length:  114374

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5227--5382	65	2.4	64	83	9	199	33	22	14	30	1.93
5227--5382	32	4.9	31	77	16	142	33	22	14	30	1.93
10235--10303	32	2.2	32	86	5	95	42	13	10	34	1.77
11866--11904	16	2.4	16	100	0	78	12	30	25	30	1.93
12332--12454	44	2.8	43	91	3	201	24	17	14	43	1.87
17062--17184	44	2.8	43	80	8	158	26	16	12	44	1.82
17947--17980	10	3.2	10	91	8	50	61	0	2	35	1.11
19427--19490	32	2.0	33	84	3	85	42	0	0	57	0.98
19423--19525	33	3.0	33	78	17	102	40	0	0	58	1.05
19556--19594	18	2.2	18	85	0	51	58	0	0	41	0.98
21784--21817	13	2.5	13	90	4	50	32	5	44	17	1.73
26406--26503	27	3.7	27	78	4	85	47	21	7	23	1.75
29216--29476	143	1.8	142	87	4	391	44	11	10	33	1.74
30385--30429	14	3.2	14	84	9	56	2	15	0	82	0.77
30383--30445	9	7.1	9	80	7	58	1	17	0	80	0.78
30484--30509	13	2.0	13	100	0	52	23	0	38	38	1.55
30786--30810	13	1.9	13	100	0	50	64	0	4	32	1.12
30873--30905	15	2.2	15	89	10	50	63	0	6	30	1.18
38451--38488	16	2.4	16	90	0	58	44	18	15	21	1.86
39802--39832	2	15.5	2	100	0	62	51	0	0	48	1.00
40119--40186	20	3.5	19	77	18	68	52	0	1	45	1.09
40158--40196	20	2.0	20	84	0	51	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42311--42459	34	4.4	34	78	1	147	44	26	5	24	1.75
42311--42460	68	2.2	68	89	2	230	44	26	5	24	1.74
42436--42482	22	2.1	22	92	0	76	48	27	8	14	1.73
46920--47083	34	4.9	34	79	5	181	45	23	4	27	1.71
46920--47083	68	2.4	67	88	5	233	45	23	4	27	1.71
50581--50614	17	2.1	16	88	5	50	11	14	0	73	1.10
51306--51338	9	3.3	10	87	12	50	66	0	0	33	0.92
54289--54323	2	17.5	2	100	0	70	0	48	0	51	1.00
54323--54347	2	12.5	2	100	0	50	48	0	0	52	1.00
54550--54599	13	3.6	14	80	15	59	54	0	0	46	1.00
54547--54610	29	2.2	29	88	0	92	48	1	0	50	1.10
55670--55712	21	2.0	22	82	13	54	39	4	4	51	1.44
55580--55907	170	2.0	166	82	6	401	45	7	6	40	1.58
55841--55888	18	2.7	18	74	6	53	52	0	0	47	1.00
56607--56794	20	8.9	20	77	12	169	30	13	13	42	1.84
56627--56680	12	5.2	12	68	32	52	35	11	18	35	1.86
56667--56844	51	3.7	50	75	17	189	28	15	11	44	1.81
56627--56842	91	2.4	91	92	1	344	29	14	13	42	1.84
57416--57558	20	6.8	20	75	13	126	30	14	10	44	1.79
57416--57558	40	3.4	40	74	14	142	30	14	10	44	1.79
59218--59247	10	2.9	10	95	5	51	36	13	0	50	1.42
59744--59930	97	1.9	95	80	9	209	28	27	12	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62533--62567	17	2.1	17	94	5	63	51	0	0	48	1.00
63913--63973	31	2.0	31	83	6	79	45	0	0	54	1.00
63999--64024	13	2.0	13	100	0	52	61	0	0	38	0.96
66493--66573	33	2.4	33	85	6	99	46	4	1	46	1.32
66511--66578	33	2.1	33	97	0	127	41	7	0	51	1.30
66700--66833	69	1.9	69	100	0	268	38	17	8	35	1.80
70365--70440	31	2.5	31	84	0	89	47	7	15	28	1.74
71089--71119	2	15.5	2	100	0	62	51	0	0	48	1.00
71868--71911	16	2.8	16	85	0	61	54	0	0	45	0.99
72350--72475	65	1.9	65	95	3	227	36	4	26	31	1.78
72455--72568	20	5.7	19	73	10	66	64	0	32	3	1.11
72494--72555	9	6.2	9	74	20	52	56	0	40	3	1.15
72504--72555	11	4.9	11	81	6	63	57	0	40	1	1.10
72454--72572	42	3.0	39	81	11	134	63	0	32	3	1.11
72831--72870	21	1.9	21	84	0	53	37	0	2	60	1.11
72842--72893	28	2.0	26	85	11	70	36	1	0	61	1.07
72841--72887	15	3.2	15	73	14	53	34	0	0	65	0.93
73389--73413	2	12.5	2	100	0	50	52	0	0	48	1.00
74740--74796	28	2.0	28	83	6	71	43	7	0	49	1.29
76573--76608	17	2.2	16	90	5	54	27	2	0	69	1.02
76595--76640	21	2.2	20	82	14	58	30	2	4	63	1.26
77116--77171	16	3.6	16	75	2	60	35	5	5	53	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77681--77720	15	2.7	15	82	17	57	35	0	0	65	0.93
77740--77876	73	1.9	74	90	1	222	43	2	11	42	1.56
79855--79888	12	2.8	12	90	4	50	26	0	2	70	1.01
80674--80716	22	2.0	22	86	9	61	41	2	0	55	1.12
80893--80924	16	1.9	17	93	6	57	56	0	0	43	0.99
81974--82015	23	1.9	22	85	9	59	28	4	16	50	1.66
82127--82166	16	2.4	18	76	23	52	57	2	5	35	1.34
82129--82174	23	2.0	22	87	4	65	58	2	2	36	1.22
83060--83127	31	2.3	28	78	9	82	51	0	0	48	1.00
90154--90188	2	17.5	2	100	0	70	51	0	48	0	1.00
91866--91902	19	1.9	19	94	0	65	40	0	0	59	0.97
105468--105494	1	27.0	1	100	0	54	0	0	100	0	0.00

Tables:   1

The End!