genome.fa.s563.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold563
Parameters: 2 7 7 80 10 50 1000
Length:  35135

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324--382	19	3.1	19	87	2	82	38	15	11	33	1.84
425--477	13	4.5	13	73	26	64	32	13	16	37	1.88
409--477	33	2.1	33	91	5	113	30	13	18	37	1.89
443--619	72	2.5	72	96	1	320	35	13	14	36	1.85
1466--1496	15	2.0	16	93	6	55	64	0	3	32	1.09
1509--1575	22	3.2	20	70	15	53	56	1	1	40	1.17
1605--1657	19	2.8	18	75	13	54	32	0	0	67	0.91
1381--1627	123	2.0	123	90	3	390	51	1	2	45	1.22
1918--1988	19	3.3	21	79	15	67	29	2	2	64	1.22
1939--1998	23	2.7	22	80	14	70	31	1	1	65	1.13
1918--1999	21	4.0	20	78	15	78	31	2	2	63	1.20
1984--2046	32	2.0	32	87	6	92	50	3	0	46	1.17
1985--2054	32	2.3	30	82	9	79	48	2	0	48	1.16
1942--2292	105	3.2	107	78	15	316	43	2	1	52	1.23
2188--2272	40	2.2	39	81	14	95	45	0	1	52	1.08
2039--2292	107	2.3	108	84	9	304	42	1	1	53	1.23
5326--5364	18	2.0	20	85	9	55	41	0	7	51	1.31
5868--5916	13	3.6	14	72	22	50	59	14	8	18	1.59
10883--11781	52	17.6	51	71	7	184	24	19	21	34	1.96
10878--11329	206	2.2	206	78	5	461	26	18	21	33	1.96
11349--11482	47	2.7	49	82	7	148	21	21	23	32	1.98
10883--11761	103	8.6	103	70	5	390	24	19	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12823--12869	16	2.9	16	83	0	58	36	17	27	19	1.93
14392--14434	22	2.0	22	86	4	61	4	6	9	79	1.06
14383--14440	27	2.1	28	80	3	64	6	8	8	75	1.18
14879--14908	13	2.3	13	100	0	60	30	16	13	40	1.87
14895--14946	20	2.7	19	82	5	68	32	13	13	40	1.83
17320--17387	28	2.4	28	80	0	82	23	30	19	26	1.98
17376--17935	237	2.4	237	82	6	661	28	23	12	34	1.92
17341--17935	79	7.6	78	81	7	564	28	23	13	33	1.93
17341--17936	158	3.8	158	82	6	654	28	23	13	34	1.93
24549--24642	20	4.7	20	81	5	109	40	12	12	34	1.82
24552--24642	40	2.3	40	88	3	130	40	13	12	34	1.81
25240--26388	28	39.9	28	84	9	1201	22	19	31	26	1.97
25234--26389	171	6.7	172	89	5	1487	22	19	31	26	1.98
27592--27655	11	5.5	11	85	5	65	6	1	7	84	0.84
27603--27655	24	2.3	23	87	9	72	5	0	7	86	0.69

Tables:   1

The End!