Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold567
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 183112
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 1 of 2
Found at i:5770 original size:17 final size:17
Alignment explanation
Indices: 5724--5772 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
5714 TACTTATTAT
* *
5724 TATCTTAAATAGATATT
1 TATCTTAAATAAATATA
*
5741 TA-CTCAAATTAAATATA
1 TATCTTAAA-TAAATATA
5758 TATCTTAAATAAATA
1 TATCTTAAATAAATA
5773 ATACAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 5 0.19
17 16 0.62
18 5 0.19
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (17 bp):
TATCTTAAATAAATATA
Found at i:8203 original size:20 final size:19
Alignment explanation
Indices: 8178--8231 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
8168 CTGCCAATTT
***
8178 CATGTATCGATACAATTGTG
1 CATGTATCGATACAA-TAAA
*
8198 CATGTATCGATATAATAAA
1 CATGTATCGATACAATAAA
8217 CATGTATCGATACAA
1 CATGTATCGATACAA
8232 AGCATAATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31
Consensus pattern (19 bp):
CATGTATCGATACAATAAA
Found at i:15294 original size:15 final size:15
Alignment explanation
Indices: 15261--15295 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
15251 CGAGTCAACT
*
15261 TCATCATTATCATCG
1 TCATCATTATCATCA
*
15276 TCATCATTATCTTCA
1 TCATCATTATCATCA
15291 TCATC
1 TCATC
15296 TTTGATGGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.03, T:0.43
Consensus pattern (15 bp):
TCATCATTATCATCA
Found at i:16913 original size:13 final size:13
Alignment explanation
Indices: 16895--16921 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16885 ACAATTTCTC
16895 ATGTATCGATACA
1 ATGTATCGATACA
16908 ATGTATCGATACA
1 ATGTATCGATACA
16921 A
1 A
16922 ACAATGGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:17732 original size:14 final size:14
Alignment explanation
Indices: 17713--17739 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
17703 AAATATAATT
17713 TATTTTAAAAATAA
1 TATTTTAAAAATAA
17727 TATTTTAAAAATA
1 TATTTTAAAAATA
17740 GAATTAACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TATTTTAAAAATAA
Found at i:19264 original size:29 final size:30
Alignment explanation
Indices: 19208--19270 Score: 83
Period size: 29 Copynumber: 2.1 Consensus size: 30
19198 GTTGAATGGA
* **
19208 AAAATTTAATAAAAATTAAAATTTAGTGAT
1 AAAATTTAATAAAAATAAAAATAAAGTGAT
*
19238 AAAATTTAAT-CAAATAAAAATAAAGTGAT
1 AAAATTTAATAAAAATAAAAATAAAGTGAT
19267 AAAA
1 AAAA
19271 ATTCAATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 19 0.66
30 10 0.34
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (30 bp):
AAAATTTAATAAAAATAAAAATAAAGTGAT
Found at i:19272 original size:30 final size:31
Alignment explanation
Indices: 19207--19278 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 31
19197 AGTTGAATGG
* **
19207 AAAAATTTAATAAAAATTAAAATTTAGTGAT
1 AAAAATTTAATAAAAATAAAAATAAAGTGAT
*
19238 -AAAATTTAAT-CAAATAAAAATAAAGTGAT
1 AAAAATTTAATAAAAATAAAAATAAAGTGAT
*
19267 AAAAATTCAATA
1 AAAAATTTAATA
19279 TTGAGTGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
29 15 0.44
30 19 0.56
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (31 bp):
AAAAATTTAATAAAAATAAAAATAAAGTGAT
Found at i:19350 original size:28 final size:29
Alignment explanation
Indices: 19319--19393 Score: 80
Period size: 30 Copynumber: 2.6 Consensus size: 29
19309 TCAATCTCAA
*
19319 AAGTATAATAACAAATATAA-ATTAAATT
1 AAGTATAATAAAAAATATAATATTAAATT
* *
19347 AAGTATAATAATAAAATTTAATATTAGATT
1 AAGTATAATAA-AAAATATAATATTAAATT
* *
19377 ATAATATAATAATAAAT
1 A-AGTATAATAAAAAAT
19394 TTATCCTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
28 11 0.28
29 7 0.18
30 12 0.31
31 9 0.23
ACGTcount: A:0.59, C:0.01, G:0.04, T:0.36
Consensus pattern (29 bp):
AAGTATAATAAAAAATATAATATTAAATT
Found at i:19364 original size:23 final size:24
Alignment explanation
Indices: 19332--19394 Score: 60
Period size: 24 Copynumber: 2.6 Consensus size: 24
19322 TATAATAACA
19332 AATATAAATTAAATTA-AGTATAAT
1 AATA-AAATTAAATTAGAGTATAAT
*
19356 AATAAAATTTAATATTAGATTATAAT
1 AATAAAA-TTAA-ATTAGAGTATAAT
19382 -ATAATAA-TAAATT
1 AATAA-AATTAAATT
19395 TATCCTTTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
23 6 0.18
24 11 0.32
25 8 0.24
26 9 0.26
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (24 bp):
AATAAAATTAAATTAGAGTATAAT
Found at i:21001 original size:131 final size:131
Alignment explanation
Indices: 20845--21107 Score: 481
Period size: 131 Copynumber: 2.0 Consensus size: 131
20835 TTGGCTTTCG
*
20845 TATCACCTTTTATGACCATTAAAATTTGGCTGTACCTGTAAAGGGGTAATGTGAATGCAAAGCCA
1 TATCACATTTTATGACCATTAAAATTTGGCTGTACCTGTAAAGGGGTAATGTGAATGCAAAGCCA
20910 TATATATAGATAAACAAATTTAACAATCGTCAATAGCAAATGTTGACTAGAAATATTTTCCTTTT
66 TATATATAGATAAACAAATTTAACAATCGTCAATAGCAAATGTTGACTAGAAATATTTTCCTTTT
20975 A
131 A
*
20976 TATCACATTTTATGACCATTAAAATTTGGCTGTACCTGTAAAGGGGTAATGTGAATGCAAAGCCG
1 TATCACATTTTATGACCATTAAAATTTGGCTGTACCTGTAAAGGGGTAATGTGAATGCAAAGCCA
* * *
21041 TATTTATTGATAAACAAATTTAACCATCGTCAATAGCAAATGTTGACTAGAAATATTTTCCTTTT
66 TATATATAGATAAACAAATTTAACAATCGTCAATAGCAAATGTTGACTAGAAATATTTTCCTTTT
21106 A
131 A
21107 T
1 T
21108 GATAATTGTT
Statistics
Matches: 127, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
131 127 1.00
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (131 bp):
TATCACATTTTATGACCATTAAAATTTGGCTGTACCTGTAAAGGGGTAATGTGAATGCAAAGCCA
TATATATAGATAAACAAATTTAACAATCGTCAATAGCAAATGTTGACTAGAAATATTTTCCTTTT
A
Found at i:21397 original size:22 final size:21
Alignment explanation
Indices: 21369--21413 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
21359 AATAATTTTT
21369 TATATAA-ATTTAATTATAAAAA
1 TATATAATA-TTAA-TATAAAAA
*
21391 TATATAATATTAATATTAAAA
1 TATATAATATTAATATAAAAA
21412 TA
1 TA
21414 ATTTTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 9 0.43
22 11 0.52
23 1 0.05
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TATATAATATTAATATAAAAA
Found at i:21427 original size:20 final size:20
Alignment explanation
Indices: 21402--21456 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 20
21392 ATATAATATT
21402 AATATTAAAATAATTTTTTA
1 AATATTAAAATAATTTTTTA
**
21422 AATATTTTAATAA--TTTTA
1 AATATTAAAATAATTTTTTA
*
21440 AATAATAAAATAGATTT
1 AATATTAAAATA-ATTT
21457 ACGAGTCTAC
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
18 14 0.52
19 1 0.04
20 11 0.41
21 1 0.04
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
AATATTAAAATAATTTTTTA
Found at i:26100 original size:32 final size:32
Alignment explanation
Indices: 26077--26151 Score: 150
Period size: 32 Copynumber: 2.3 Consensus size: 32
26067 ACATTATGCT
26077 TTGTATCGATACATTGTATGATACATGGATAA
1 TTGTATCGATACATTGTATGATACATGGATAA
26109 TTGTATCGATACATTGTATGATACATGGATAA
1 TTGTATCGATACATTGTATGATACATGGATAA
26141 TTGTATCGATA
1 TTGTATCGATA
26152 AATGAAACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (32 bp):
TTGTATCGATACATTGTATGATACATGGATAA
Found at i:26151 original size:12 final size:12
Alignment explanation
Indices: 26077--26134 Score: 63
Period size: 12 Copynumber: 5.1 Consensus size: 12
26067 ACATTATGCT
26077 TTGTATCGATACA
1 TTGTAT-GATACA
26090 TTGTATGATACA
1 TTGTATGATACA
26102 -TG---GATA-A
1 TTGTATGATACA
26109 TTGTATCGATACA
1 TTGTAT-GATACA
26122 TTGTATGATACA
1 TTGTATGATACA
26134 T
1 T
26135 GGATAATTGT
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
7 1 0.03
8 6 0.15
11 2 0.05
12 17 0.44
13 13 0.33
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (12 bp):
TTGTATGATACA
Found at i:26151 original size:20 final size:19
Alignment explanation
Indices: 26084--26122 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 19
26074 GCTTTGTATC
26084 GATACATTGTATGATACATG
1 GATA-ATTGTATGATACATG
26104 GATAATTGTATCGATACAT
1 GATAATTGTAT-GATACAT
26123 TGTATGATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (19 bp):
GATAATTGTATGATACATG
Found at i:26273 original size:19 final size:20
Alignment explanation
Indices: 26249--26303 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
26239 GTCTCGATAG
* **
26249 ATTGTATTGATACATGTTC-
1 ATTGTATCGATACATGGACA
26268 ATTGTATCGATACATGGACA
1 ATTGTATCGATACATGGACA
26288 ATTGTATCGATACATG
1 ATTGTATCGATACATG
26304 AAACTGGTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (20 bp):
ATTGTATCGATACATGGACA
Found at i:26357 original size:20 final size:20
Alignment explanation
Indices: 26332--26398 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 20
26322 CTACCACTGT
26332 TTGTATCGATACATGGTACA
1 TTGTATCGATACATGGTACA
*
26352 TTGTAT---T-GAT---ACA
1 TTGTATCGATACATGGTACA
26365 TTGTATCGATACATGGTACA
1 TTGTATCGATACATGGTACA
*
26385 TTGTATTGATACAT
1 TTGTATCGATACAT
26399 TGTATCGATA
Statistics
Matches: 37, Mismatches: 3, Indels: 14
0.69 0.06 0.26
Matches are distributed among these distances:
13 9 0.24
16 3 0.08
17 3 0.08
20 22 0.59
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (20 bp):
TTGTATCGATACATGGTACA
Found at i:26366 original size:13 final size:13
Alignment explanation
Indices: 26348--26411 Score: 68
Period size: 13 Copynumber: 5.4 Consensus size: 13
26338 CGATACATGG
*
26348 TACATTGTATTGA
1 TACATTGTATCGA
26361 TACATTGTATCGA
1 TACATTGTATCGA
26374 TACA-TG----G-
1 TACATTGTATCGA
*
26381 TACATTGTATTGA
1 TACATTGTATCGA
26394 TACATTGTATCGA
1 TACATTGTATCGA
26407 TACAT
1 TACAT
26412 GATGAATCGT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 4 0.09
8 3 0.07
12 3 0.07
13 33 0.77
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:26401 original size:148 final size:149
Alignment explanation
Indices: 26120--26431 Score: 466
Period size: 148 Copynumber: 2.1 Consensus size: 149
26110 TGTATCGATA
*
26120 CATTGTAT-GATACATGGATAATTGTATCGATAAATGAAACTGGTAGTAGCTACCCTACCACTGT
1 CATTGTATCGATACATGGACAATTGTATCGATAAATGAAACTGGTAGTAGCTACCCTACCACTGT
* ** * *
26184 TTGTATGGATACATGGTAAATTGTATTGATACATTGAATCGATACATAATGTATTGTCTCGATAG
66 TTGTATCGATACATGGTAAATTGTATTGATACATTGAATCGATACATAATACATTGTATCGATAC
* *
26249 ATTGTATTGATACATG-TT
131 ATTGTATCGATACATGATG
*
26267 CATTGTATCGATACATGGACAATTGTATCGATACATGAAACTGGTAGTAGCTACCCTACCACTGT
1 CATTGTATCGATACATGGACAATTGTATCGATAAATGAAACTGGTAGTAGCTACCCTACCACTGT
* * ** *
26332 TTGTATCGATACATGGTACATTGTATTGATACATTGTATCGATACATGGTACATTGTATTGATAC
66 TTGTATCGATACATGGTAAATTGTATTGATACATTGAATCGATACATAATACATTGTATCGATAC
26397 ATTGTATCGATACATGATG
131 ATTGTATCGATACATGATG
* *
26416 AATCGTATCGATACAT
1 CATTGTATCGATACAT
26432 TGCTTGTAAC
Statistics
Matches: 147, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
147 8 0.05
148 124 0.84
149 15 0.10
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (149 bp):
CATTGTATCGATACATGGACAATTGTATCGATAAATGAAACTGGTAGTAGCTACCCTACCACTGT
TTGTATCGATACATGGTAAATTGTATTGATACATTGAATCGATACATAATACATTGTATCGATAC
ATTGTATCGATACATGATG
Found at i:26414 original size:20 final size:20
Alignment explanation
Indices: 26358--26431 Score: 65
Period size: 20 Copynumber: 4.0 Consensus size: 20
26348 TACATTGTAT
26358 TGATACATTGTATCGATACA
1 TGATACATTGTATCGATACA
*
26378 TGGTACATTG--T--AT---
1 TGATACATTGTATCGATACA
26391 TGATACATTGTATCGATACA
1 TGATACATTGTATCGATACA
*
26411 TGATGA-ATCGTATCGATACA
1 TGAT-ACATTGTATCGATACA
26431 T
1 T
26432 TGCTTGTAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 16
0.69 0.05 0.26
Matches are distributed among these distances:
13 9 0.21
15 1 0.02
16 2 0.05
17 2 0.05
18 1 0.02
20 27 0.63
21 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (20 bp):
TGATACATTGTATCGATACA
Found at i:26433 original size:33 final size:33
Alignment explanation
Indices: 26332--26412 Score: 162
Period size: 33 Copynumber: 2.5 Consensus size: 33
26322 CTACCACTGT
26332 TTGTATCGATACATGGTACATTGTATTGATACA
1 TTGTATCGATACATGGTACATTGTATTGATACA
26365 TTGTATCGATACATGGTACATTGTATTGATACA
1 TTGTATCGATACATGGTACATTGTATTGATACA
26398 TTGTATCGATACATG
1 TTGTATCGATACATG
26413 ATGAATCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.40
Consensus pattern (33 bp):
TTGTATCGATACATGGTACATTGTATTGATACA
Found at i:32698 original size:22 final size:22
Alignment explanation
Indices: 32643--32741 Score: 173
Period size: 22 Copynumber: 4.5 Consensus size: 22
32633 ATGAACAGTG
*
32643 TGAACAGTGACGTATCGATACA
1 TGAACAGTGATGTATCGATACA
*
32665 TGAA-GGTGATGTATCGATACA
1 TGAACAGTGATGTATCGATACA
32686 TGAACAGTGATGTATCGATACA
1 TGAACAGTGATGTATCGATACA
32708 TGAACAGTGATGTATCGATACA
1 TGAACAGTGATGTATCGATACA
32730 TGAACAGTGATG
1 TGAACAGTGATG
32742 AATAGTGAAA
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
21 19 0.26
22 54 0.74
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.26
Consensus pattern (22 bp):
TGAACAGTGATGTATCGATACA
Found at i:32839 original size:53 final size:53
Alignment explanation
Indices: 32773--32909 Score: 247
Period size: 53 Copynumber: 2.6 Consensus size: 53
32763 CTACTACCAA
32773 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
32826 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
32879 TGTATCGATACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
32910 TATGCAATCT
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
53 67 0.84
54 13 0.16
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:32942 original size:20 final size:20
Alignment explanation
Indices: 32879--32949 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
32869 GCCAATGTCC
**
32879 TGTATCGATACATATTTGTG
1 TGTATCGATACATATTAATG
* *
32899 TGTATCGATAC-TATGCAATC
1 TGTATCGATACATAT-TAATG
32919 TGTATCGATACAT-TTAAATG
1 TGTATCGATACATATT-AATG
*
32939 TGTATTGATAC
1 TGTATCGATAC
32950 TTTTCAGGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 3 0.07
20 37 0.90
21 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATATTAATG
Found at i:33015 original size:21 final size:21
Alignment explanation
Indices: 32989--33029 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
32979 ATCAACCTTG
32989 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
33010 TGTATTAATACAATACGTAT
1 TGTATTAATACAATACGTAT
33030 TTTTACTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:45387 original size:19 final size:20
Alignment explanation
Indices: 45349--45393 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
45339 CCAATATATT
*
45349 GATACATTTTGGGATGTATC
1 GATACATCTTGGGATGTATC
*
45369 GATACATCTTGTG-TGTATC
1 GATACATCTTGGGATGTATC
45388 GATACA
1 GATACA
45394 AATAGTTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.52
20 11 0.48
ACGTcount: A:0.27, C:0.13, G:0.22, T:0.38
Consensus pattern (20 bp):
GATACATCTTGGGATGTATC
Found at i:47844 original size:23 final size:24
Alignment explanation
Indices: 47799--47845 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
47789 CAAAGAATTG
*
47799 AACACAAATTCAATTAAGCACAAA
1 AACACAAATTCAATTAAGAACAAA
47823 AACACAAA-TCAATTGAA-AACAAA
1 AACACAAATTCAATT-AAGAACAAA
47846 TTTTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.15
Consensus pattern (24 bp):
AACACAAATTCAATTAAGAACAAA
Found at i:50971 original size:13 final size:13
Alignment explanation
Indices: 50953--50978 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50943 CATTTTGGGA
50953 TGTATCGATACAT
1 TGTATCGATACAT
50966 TGTATCGATACAT
1 TGTATCGATACAT
50979 CTTGTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:50975 original size:33 final size:32
Alignment explanation
Indices: 50933--50996 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
50923 TACAAGCCAA
*
50933 TGTATCGATACATTTTGGGATGTATCGATACAT
1 TGTATCGATACATCTTGGG-TGTATCGATACAT
*
50966 TGTATCGATACATCTTGTGTGTATCGATACA
1 TGTATCGATACATCTTGGGTGTATCGATACA
50997 AATAGTTAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (32 bp):
TGTATCGATACATCTTGGGTGTATCGATACAT
Found at i:54708 original size:52 final size:52
Alignment explanation
Indices: 54597--54735 Score: 145
Period size: 52 Copynumber: 2.7 Consensus size: 52
54587 ATTTAACTAG
* * * * * *
54597 ATGTATCAATACATTGAAGAATAGATCGATATATTTGGGTTAAAAACCCAAA
1 ATGTATCGATACAATGAAAAATATATCGATACATTTGGGTAAAAAACCCAAA
* ***
54649 ATATATCGATACAATGAAAAATATATCGATACATTTGGGTAAAAAACCTGTA
1 ATGTATCGATACAATGAAAAATATATCGATACATTTGGGTAAAAAACCCAAA
* * **
54701 ATGTATCGATATAAT-AAAAATGTATTAATACATTT
1 ATGTATCGATACAATGAAAAATATATCGATACATTT
54736 TCTTTCTAGA
Statistics
Matches: 72, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
51 17 0.24
52 55 0.76
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (52 bp):
ATGTATCGATACAATGAAAAATATATCGATACATTTGGGTAAAAAACCCAAA
Found at i:54810 original size:20 final size:20
Alignment explanation
Indices: 54773--54824 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
54763 ACAAGATCCA
* *
54773 GTATCGATATATTCACTTAT
1 GTATCGATACATTAACTTAT
* *
54793 GTATCGATGCATTAACTTGTT
1 GTATCGATACATTAACTT-AT
*
54814 GTATCTATACA
1 GTATCGATACA
54825 AATTGTAGAA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (20 bp):
GTATCGATACATTAACTTAT
Found at i:58532 original size:22 final size:22
Alignment explanation
Indices: 58506--58547 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
58496 AATGCATGAA
*
58506 AACAAGCTCCAAACA-AGTCAAC
1 AACAA-CTACAAACACAGTCAAC
58528 AACAACTACAAACACAGTCA
1 AACAACTACAAACACAGTCA
58548 TTCAACCTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.52, C:0.31, G:0.07, T:0.10
Consensus pattern (22 bp):
AACAACTACAAACACAGTCAAC
Found at i:60626 original size:19 final size:21
Alignment explanation
Indices: 60602--60649 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
60592 AAGAGATTAG
60602 TTTTTCATT-TC-TTTTCATT
1 TTTTTCATTCTCATTTTCATT
60621 TTTTTCATTCCTCATTTTTCATT
1 TTTTTCATT-CTCA-TTTTCATT
60644 TTTTTC
1 TTTTTC
60650 TCTAAGAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.36
21 2 0.08
23 14 0.56
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (21 bp):
TTTTTCATTCTCATTTTCATT
Found at i:70777 original size:169 final size:165
Alignment explanation
Indices: 70280--70838 Score: 576
Period size: 160 Copynumber: 3.4 Consensus size: 165
70270 AATTCCCATC
* * * **
70280 AAATTAGTTTTCAAAAATTCCTTCATTTTCTTGAGTTTTTGAA-TTTTTTCC-CAAAAT-TCCCT
1 AAATCAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTTTCCTTGAAATCT-CC-
** * * * * *
70342 TTTTTTGAAATACATTATTTTCTACTTTGT-AATTTTTTTCA-AAGCAATTTTT-TT-ATTTTTA
64 TTTTTTGAAA-A-AAGAATTTCTACTTCGTAAATTTTTTTCAGGAG-GATTTTTCTTGGTTTTTA
* * * * * *
70403 CTTTTTAAAATTTATCAAATATCATTATTTCTATCACATT
126 ATTTTTAAAATTCATCAAATATTATTATTTATTTCATATT
* * *
70443 AAATCAGTTTTCAAAAATTCCTTCATTTTCTTAAGTTTTTGAATTTTTTT-CTTGAAA--T--TT
1 AAATCAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTTTCCTTGAAATCTCCTT
* * *
70503 TTTTGAAAAACAGAGTTATCTTCTTCGTAAA-TTTCTTCAAGG-GGA-TTTTCTTGGTTTTTAAT
66 TTTTGAAAAA-AGAATT-TCTACTTCGTAAATTTTTTTC-AGGAGGATTTTTCTTGGTTTTTAAT
* * *
70565 TTTTAAAATTCATTAAATATTATTATTTTTTTCATAAT
128 TTTTAAAATTCATCAAATATTATTATTTATTTCATATT
*
70603 AAATCAGTTTTGAAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTTTCCTTGAAATTCTCCT
1 AAATCAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTTTCCTTGAAA-TCTCCT
*
70668 ATTTTTGGAAAAAAGAAATTTCTACTCCGTAAATTTTTTTCAGGAGGATTTTTCTTGGTTTTTAA
65 -TTTTT-GAAAAAAG-AATTTCTACTTCGTAAATTTTTTTCAGGAGGATTTTTCTTGGTTTTTAA
* *
70733 TTATTAAAATCCATCAAATATTATTATTTATTTCATATT
127 TTTTTAAAATTCATCAAATATTATTATTTATTTCATATT
* * *
70772 AAATCAG-TTTCTAAAAATTCATTCATTTTCATGAG-TTTTGATTTTTTTTCTTTGAAATCTCCC
1 AAATCAGTTTTC-AAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTTTCCTTGAAATCTCCT
70835 TTTT
65 TTTT
70839 CCCAAAAAAG
Statistics
Matches: 336, Mismatches: 38, Indels: 41
0.81 0.09 0.10
Matches are distributed among these distances:
157 1 0.00
158 8 0.02
159 27 0.08
160 88 0.26
161 7 0.02
163 43 0.13
164 10 0.03
166 5 0.01
167 26 0.08
168 41 0.12
169 80 0.24
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.51
Consensus pattern (165 bp):
AAATCAGTTTTCAAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTTTCCTTGAAATCTCCTT
TTTTGAAAAAAGAATTTCTACTTCGTAAATTTTTTTCAGGAGGATTTTTCTTGGTTTTTAATTTT
TAAAATTCATCAAATATTATTATTTATTTCATATT
Found at i:71335 original size:20 final size:20
Alignment explanation
Indices: 71316--71352 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
71306 AATATCACAT
71316 TAAAAAAT-AAAGAAAAACA
1 TAAAAAATAAAAGAAAAACA
*
71335 TGAAAAATAAAAGAAAAA
1 TAAAAAATAAAAGAAAAA
71353 GCAGGAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.78, C:0.03, G:0.08, T:0.11
Consensus pattern (20 bp):
TAAAAAATAAAAGAAAAACA
Found at i:75570 original size:36 final size:36
Alignment explanation
Indices: 75490--75620 Score: 200
Period size: 36 Copynumber: 3.8 Consensus size: 36
75480 TACAACACTA
*
75490 TTTTTC-AAGGCTAAGATAGAA--AC-CTCCCTATC
1 TTTTTCAAAGGCTAAGATAGAACCTCTCTCCCTATC
**
75522 -TTTTCACGGGCTAAGATAGAACCTCTCTCCCTATC
1 TTTTTCAAAGGCTAAGATAGAACCTCTCTCCCTATC
75557 TTTTTCAAAGGCTAAGATAGAACCTCTCTCCCTATC
1 TTTTTCAAAGGCTAAGATAGAACCTCTCTCCCTATC
75593 TTTTTCAAAGGCTAAGATAGAACCTCTC
1 TTTTTCAAAGGCTAAGATAGAACCTCTC
75621 AATTACTTAG
Statistics
Matches: 89, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
31 5 0.06
32 13 0.15
34 1 0.01
35 9 0.10
36 61 0.69
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (36 bp):
TTTTTCAAAGGCTAAGATAGAACCTCTCTCCCTATC
Found at i:76085 original size:20 final size:20
Alignment explanation
Indices: 76060--76114 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
76050 GTTGGTCTCA
76060 ATGTATCGATACAATTCACT
1 ATGTATCGATACAATTCACT
*
76080 ATGTATCGATATAATTCACT
1 ATGTATCGATACAATTCACT
*
76100 ATGTATCCATACAAT
1 ATGTATCGATACAAT
76115 ATATCGATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACAATTCACT
Found at i:76210 original size:13 final size:13
Alignment explanation
Indices: 76192--76217 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76182 TACCAAGAAT
76192 ATGTATTGATACA
1 ATGTATTGATACA
76205 ATGTATTGATACA
1 ATGTATTGATACA
76218 TCTAGGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
ATGTATTGATACA
Found at i:76341 original size:20 final size:21
Alignment explanation
Indices: 76316--76355 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
76306 CTTTGAATTG
76316 TTTTTA-CTTGAAAAATATTA
1 TTTTTAGCTTGAAAAATATTA
76336 TTTTTATGCTTGAAAAATAT
1 TTTTTA-GCTTGAAAAATAT
76356 CTGTACTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
22 12 0.67
ACGTcount: A:0.38, C:0.05, G:0.07, T:0.50
Consensus pattern (21 bp):
TTTTTAGCTTGAAAAATATTA
Found at i:81098 original size:30 final size:31
Alignment explanation
Indices: 81064--81159 Score: 88
Period size: 36 Copynumber: 3.0 Consensus size: 31
81054 CCTTACAACA
81064 CTATCTTTT-AAGGG-TAAGATAGAAACCTCC
1 CTATCTTTTCAAGGGCTAAGATAG-AACCTCC
*
81094 CTATCTTTTCACGGGCTAAGATAGAACCTCTCTCC
1 CTATCTTTTCAAGGGCTAAGATAGAA---C-CTCC
* * *
81129 CTATCTTTTTCAAAGGCTATGATGGAACCTC
1 CTATC-TTTTCAAGGGCTAAGATAGAACCTC
81160 TCAATCACTT
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
30 9 0.17
31 6 0.11
32 11 0.20
33 1 0.02
34 1 0.02
35 9 0.17
36 17 0.31
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (31 bp):
CTATCTTTTCAAGGGCTAAGATAGAACCTCC
Found at i:81118 original size:32 final size:29
Alignment explanation
Indices: 81064--81123 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 29
81054 CCTTACAACA
81064 CTATCTTTTAAGGGTAAGATAGAAACCTCC
1 CTATCTTTTAAGGGTAAGATAG-AACCTCC
*
81094 CTATCTTTTCACGGGCTAAGATAGAACCTC
1 CTATCTTTT-AAGGG-TAAGATAGAACCTC
81124 TCTCCCTATC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 9 0.33
31 10 0.37
32 8 0.30
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (29 bp):
CTATCTTTTAAGGGTAAGATAGAACCTCC
Found at i:81134 original size:35 final size:36
Alignment explanation
Indices: 81090--81161 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
81080 AGATAGAAAC
**
81090 CTCCCTATC-TTTTCACGGGCTAAGATAGAACCTCT
1 CTCCCTATCTTTTTCAAAGGCTAAGATAGAACCTCT
* *
81125 CTCCCTATCTTTTTCAAAGGCTATGATGGAACCTCT
1 CTCCCTATCTTTTTCAAAGGCTAAGATAGAACCTCT
81161 C
1 C
81162 AATCACTTAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
35 9 0.28
36 23 0.72
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.33
Consensus pattern (36 bp):
CTCCCTATCTTTTTCAAAGGCTAAGATAGAACCTCT
Found at i:81647 original size:20 final size:20
Alignment explanation
Indices: 81601--81638 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
81591 GTTAGGCTCA
81601 ATGTATCGATACAATTCACC
1 ATGTATCGATACAATTCACC
81621 ATGTATCGATACAATTCA
1 ATGTATCGATACAATTCA
81639 TTATGTATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAATTCACC
Found at i:81755 original size:32 final size:33
Alignment explanation
Indices: 81714--81777 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
81704 TATTTCAAGG
81714 TGTATTGATACCAA-TAACATGTATCGATACAA
1 TGTATTGATACCAAGTAACATGTATCGATACAA
* *
81746 TGTATTGATACTAAGTAATATGTATCGATACA
1 TGTATTGATACCAAGTAACATGTATCGATACA
81778 TCTGGGTGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 13 0.45
33 16 0.55
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (33 bp):
TGTATTGATACCAAGTAACATGTATCGATACAA
Found at i:81876 original size:20 final size:21
Alignment explanation
Indices: 81853--81893 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
81843 GATACTTTGA
81853 ATTATTTTTA-CTTGAAAAAC
1 ATTATTTTTAGCTTGAAAAAC
81873 ATTATTTTTATGCTTGAAAAA
1 ATTATTTTTA-GCTTGAAAAA
81894 TATCTATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
22 9 0.47
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (21 bp):
ATTATTTTTAGCTTGAAAAAC
Found at i:83698 original size:26 final size:25
Alignment explanation
Indices: 83669--83733 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 25
83659 AAATTTTCTC
* *
83669 AAAAATAAAAAATAAAAAAT-GAAA
1 AAAAAAAAAAAACAAAAAATGGAAA
*
83693 TAAAAAGAGAAAAACAAAAAATGGGAAA
1 -AAAAA-AAAAAAACAAAAAAT-GGAAA
83721 AAAAACAAAAAAA
1 AAAAA-AAAAAAA
83734 ATAGCTTGAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
25 5 0.16
26 12 0.38
27 11 0.34
28 4 0.12
ACGTcount: A:0.80, C:0.03, G:0.09, T:0.08
Consensus pattern (25 bp):
AAAAAAAAAAAACAAAAAATGGAAA
Found at i:84785 original size:20 final size:22
Alignment explanation
Indices: 84760--84813 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 22
84750 GATTGCATTA
84760 GCATTTGCATCT-TTACAT-A-T
1 GCATTTGCATCTATTA-ATGATT
84780 GCATTTGTCATTCTATTAATGATT
1 GCATTTG-CA-TCTATTAATGATT
84804 GCATTTGCAT
1 GCATTTGCAT
84814 TTTCTCACCT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
20 7 0.24
21 2 0.07
22 6 0.21
23 6 0.21
24 8 0.28
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.46
Consensus pattern (22 bp):
GCATTTGCATCTATTAATGATT
Found at i:85648 original size:89 final size:90
Alignment explanation
Indices: 85486--85656 Score: 245
Period size: 89 Copynumber: 1.9 Consensus size: 90
85476 TTCAAGGAAA
* * * * * ** *
85486 ACACATTTCCTAATCATATCCCCTTCACTCAGCCCTTAAATGGTATTGATGCATTGCAAAGCTTG
1 ACACATTTCCCAATCATATCCCCTTCACCCAACCATTAAATGGTACTGATGCATCACAAAGCTCG
*
85551 ATTTCCTTGGGGCAAGGTGCAGCCC
66 ATATCCTTGGGGCAAGGTGCAGCCC
*
85576 ACACA-TTCCCAATCATATTCCCTTCACCCAACCATTAAATGGTACTGATGCATCACAAAGCTCG
1 ACACATTTCCCAATCATATCCCCTTCACCCAACCATTAAATGGTACTGATGCATCACAAAGCTCG
85640 ATATCCTTGGGGCAAGG
66 ATATCCTTGGGGCAAGG
85657 ATACCCTAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
89 66 0.93
90 5 0.07
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (90 bp):
ACACATTTCCCAATCATATCCCCTTCACCCAACCATTAAATGGTACTGATGCATCACAAAGCTCG
ATATCCTTGGGGCAAGGTGCAGCCC
Found at i:85935 original size:48 final size:47
Alignment explanation
Indices: 85879--86225 Score: 306
Period size: 48 Copynumber: 7.3 Consensus size: 47
85869 TTGACTGTTT
* *
85879 CTGGTCAAACTCTTTTCATCCCTTGTTTGATTGTATTGGTGTTAGAGC
1 CTGGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAG-GC
* * * **
85927 CTGGTCAAACTCTTTCCA-CCCCCGTTTGACTGTATTAGCATTAGGAC
1 CTGGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGG-C
* * **
85974 CTGGTCAAACTCTTTCCA-CCCTCGTTT-ACTGTATTAGCATTAGGAC
1 CTGGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGG-C
* *
86020 CTGGTCAAACTCTTTTTCATCTCTCATTTGACTGTATTGGTGTTAGGGC
1 CTGGTCAAACTC-TTTTCATCCCTCGTTTGACTGTATTGGTGTTA-GGC
* * * *
86069 CTGGTTAAATTCTTTTCA-CCCTTTGTTTGATTGTATTGGTGTTAGGGC
1 CTGGTCAAACTCTTTTCATCCC-TCGTTTGACTGTATTGGTGTTA-GGC
* * *** * * * * *
86117 CTAGTTAAACTCAAATCTTTCCTCATTTGACTGTATTGGTATTAGGTT
1 CTGGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGG-C
* *
86165 CTAGTCAAACTCTTTTCATCCCTCGTTTAACTGTATTGGTGTTAAGGC
1 CTGGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTT-AGGC
* *
86213 TTGATCAAACTCT
1 CTGGTCAAACTCT
86226 CCCTTTTCTT
Statistics
Matches: 245, Mismatches: 45, Indels: 18
0.80 0.15 0.06
Matches are distributed among these distances:
46 32 0.13
47 56 0.23
48 127 0.52
49 28 0.11
50 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.41
Consensus pattern (47 bp):
CTGGTCAAACTCTTTTCATCCCTCGTTTGACTGTATTGGTGTTAGGC
Found at i:86294 original size:44 final size:44
Alignment explanation
Indices: 86239--86749 Score: 328
Period size: 44 Copynumber: 11.6 Consensus size: 44
86229 TTTTCTTGTC
* * *
86239 TGACATATGGTTACCACCCTGGTTAGATTCTTTTCATTTTGATT
1 TGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTTGATT
* * * * *
86283 TGACGCATGGTTACCACCCTATTCA-AATCTGCATTC-TTCTTG-TC
1 TGACGTATGGTTACCACCCTAGTCAGATTCT--TTTCATT-TTGATT
* * **
86327 T-AGCGTATGGTTAGCACTCTAGTCAGATTCTTTTCATTCCGATT
1 TGA-CGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTTGATT
* ** * *
86371 TGACGTATGGTTACCACCCTAGTCA-AATCTGCCTCCTTCTTG-TC
1 TGACGTATGGTTACCACCCTAGTCAGATTCT-TTTCATT-TTGATT
* * * *
86415 T-AGTGTATGGTTACCACCCTGGTCAGATTTTTTTTTTATTTTGATT
1 TGA-CGTATGGTTACCACCCTAGTCAGA--TTCTTTTCATTTTGATT
* * ** * *
86461 TGACATATGGTTACCACCCTAGTCA-AATCTGCCTCCTTCTT-ATC
1 TGACGTATGGTTACCACCCTAGTCAGATTCT-TTTCATT-TTGATT
* *
86505 TGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATT
1 TGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTTGATT
* * * *
86549 TGATGTATGGTTACCACCTTGGTCAGATTCTTTTCATTCTGATT
1 TGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTTGATT
** * * * *** *
86593 TGATATATGGTTACCACCCTGGTCAAATCCGCCTC-TTTCCT-ATC
1 TGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTT--TGATT
* *
86637 TGACGTATGGTTACCACCTTAGTCAGATTCTTTTCATTTTAATT
1 TGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTTGATT
* * * * * *
86681 TGAGGTATGGTTACCACCTTGGTCA-AATCTGTCTCCTTTCTG-TT
1 TGACGTATGGTTACCACCCTAGTCAGATTCT-TTTCATTT-TGATT
* *
86725 TAACGTATGGTTATCACCCTAGTCA
1 TGACGTATGGTTACCACCCTAGTCA
86750 AACGATTTGC
Statistics
Matches: 355, Mismatches: 86, Indels: 52
0.72 0.17 0.11
Matches are distributed among these distances:
43 24 0.07
44 276 0.78
45 28 0.08
46 24 0.07
47 3 0.01
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (44 bp):
TGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTTTGATT
Found at i:86355 original size:88 final size:88
Alignment explanation
Indices: 86231--86566 Score: 442
Period size: 88 Copynumber: 3.8 Consensus size: 88
86221 ACTCTCCCTT
* * * * *
86231 TTCTTGTCTGACATATGGTTACCACCCTGGTTAGATTCTTTTCATTTTGATTTGACGCATGGTTA
1 TTCTTGTCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTA
* * *
86296 CCACCCTATTCAAATCTGCATTC
66 CCACCCTAGTCAAATCTGCCTCC
* * *
86319 TTCTTGTCT-AGCGTATGGTTAGCACTCTAGTCAGATTCTTTTCATTCCGATTTGACGTATGGTT
1 TTCTTGTCTGA-CGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGACGTATGGTT
86383 ACCACCCTAGTCAAATCTGCCTCC
65 ACCACCCTAGTCAAATCTGCCTCC
* * * * * *
86407 TTCTTGTCT-AGTGTATGGTTACCACCCTGGTCAGATTTTTTTTTTATTTTGATTTGACATATGG
1 TTCTTGTCTGA-CGTATGGTTACCACCCTAGTCAGA--TTCTTTTCATTCTGATTTGACGTATGG
86471 TTACCACCCTAGTCAAATCTGCCTCC
63 TTACCACCCTAGTCAAATCTGCCTCC
* * *
86497 TTCTTATCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATTTGATGTATGGTTA
1 TTCTTGTCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTA
86562 CCACC
66 CCACC
86567 TTGGTCAGAT
Statistics
Matches: 215, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
87 1 0.00
88 135 0.63
90 78 0.36
91 1 0.00
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (88 bp):
TTCTTGTCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTA
CCACCCTAGTCAAATCTGCCTCC
Found at i:86473 original size:178 final size:176
Alignment explanation
Indices: 86244--86566 Score: 486
Period size: 178 Copynumber: 1.8 Consensus size: 176
86234 TTGTCTGACA
* * *
86244 TATGGTTACCACCCTGGTTAGATTCTTTTCATTTTGATTTGACGCATGGTTACCACCCTATTCAA
1 TATGGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGACACATGGTTACCACCCTAGTCAA
* * * * *
86309 ATCTGCATTCTTCTTGTCT-AGCGTATGGTTAGCACTCTAGTCAGATTCTTTTCATTCCGATTTG
66 ATCTGCATCCTTCTTATCTGA-CGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCAATTTG
86373 ACGTATGGTTACCACCCTAGTCAAATCTGCCTCCTTCTTGTCTAGTG
130 ACGTATGGTTACCACCCTAGTCAAATCTGCCTCCTTCTTGTCTAGTG
* * *
86420 TATGGTTACCACCCTGGTCAGATTTTTTTTTTATTTTGATTTGACATATGGTTACCACCCTAGTC
1 TATGGTTACCACCCTGGTCAGA--TTCTTTTCATTTTGATTTGACACATGGTTACCACCCTAGTC
* *
86485 AAATCTGCCTCCTTCTTATCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATTT
64 AAATCTGCATCCTTCTTATCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCAATTT
*
86550 GATGTATGGTTACCACC
129 GACGTATGGTTACCACC
86567 TTGGTCAGAT
Statistics
Matches: 130, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
176 21 0.16
178 108 0.83
179 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.15, T:0.41
Consensus pattern (176 bp):
TATGGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGACACATGGTTACCACCCTAGTCAA
ATCTGCATCCTTCTTATCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCAATTTGA
CGTATGGTTACCACCCTAGTCAAATCTGCCTCCTTCTTGTCTAGTG
Found at i:86602 original size:88 final size:88
Alignment explanation
Indices: 86244--86751 Score: 379
Period size: 88 Copynumber: 5.8 Consensus size: 88
86234 TTGTCTGACA
* * * * *
86244 TATGGTTACCACCCTGGTTAGATTCTTTTCATTTTGATTTGACGCATGGTTACCACCCTATTCAA
1 TATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTCAA
* *
86309 ATCTGCATTC-TTCTTG-TCT-AGCG
66 ATCTGC-CTCATTC-TGATCTGA-TG
* * *
86332 TATGGTTAGCACTCTAGTCAGATTCTTTTCATTCCGATTTGACGTATGGTTACCACCCTAGTCAA
1 TATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTCAA
*
86397 ATCTGCCTCCTTCTTG-TCT-AGTG
66 ATCTGCCTCATTC-TGATCTGA-TG
* * * * *
86420 TATGGTTACCACCCTGGTCAGATTTTTTTTTTATTTTGATTTGACATATGGTTACCACCCTAGTC
1 TATGGTTACCACCCTAGTCAGA--TTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTC
* * *
86485 AAATCTGCCTCCTTCTTATCTGACG
64 AAATCTGCCTCATTCTGATCTGATG
* * * *
86510 TATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATTTGATGTATGGTTACCACCTTGGTCAG
1 TATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTCA-
* ** * *
86575 ATTCT-TTTCATTCTGATTTGATA
65 AATCTGCCTCATTCTGATCTGATG
* * * *** * * *
86598 TATGGTTACCACCCTGGTCAAATCCGCCTCTTTCCT-ATCTGACGTATGGTTACCACCTTAGTCA
1 TATGGTTACCACCCTAGTCAGATTCTTTTCATT-CTGATTTGACGTATGGTTACCACCCTAGTCA
* ** * * * *
86662 GATTCT-TTTCATTTTAATTTGAGG
65 -AATCTGCCTCATTCTGATCTGATG
* * * * * * *
86686 TATGGTTACCACCTTGGTCA-AATCTGTCTCCTTTCTG-TTTAACGTATGGTTATCACCCTAGTC
1 TATGGTTACCACCCTAGTCAGATTCT-T-TTCATTCTGATTTGACGTATGGTTACCACCCTAGTC
86749 AAA
64 AAA
86752 CGATTTGCAT
Statistics
Matches: 347, Mismatches: 63, Indels: 21
0.81 0.15 0.05
Matches are distributed among these distances:
87 5 0.01
88 254 0.73
89 11 0.03
90 76 0.22
91 1 0.00
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (88 bp):
TATGGTTACCACCCTAGTCAGATTCTTTTCATTCTGATTTGACGTATGGTTACCACCCTAGTCAA
ATCTGCCTCATTCTGATCTGATG
Found at i:86604 original size:178 final size:176
Alignment explanation
Indices: 86243--86617 Score: 470
Period size: 178 Copynumber: 2.1 Consensus size: 176
86233 CTTGTCTGAC
* * *
86243 ATATGGTTACCACCCTGGTTAGATTCTTTTCATTTTGATTTGACGCATGGTTACCACCCTATTCA
1 ATATGGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGACACATGGTTACCACCCTAGTCA
* * * * *
86308 AATCTGCATTCTTCTTGTCTAGCGTATGGTTAGCACTCTAGTCAGATTCTTTTCATTCCGATTTG
66 AATCTGCATCCTTCTTATCTAGCGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCAATTTG
*
86373 ACGTATGGTTACCACCCTAGTCAAATCTGCCTCCTTCTTGTCTAGT
131 ACGTATGGTTACCACCCTAGTCAAATCTGCCTCATTCTTGTCTAGT
* * * *
86419 GTATGGTTACCACCCTGGTCAGATTTTTTTTTTATTTTGATTTGACATATGGTTACCACCCTAGT
1 ATATGGTTACCACCCTGGTCAGA--TTCTTTTCATTTTGATTTGACACATGGTTACCACCCTAGT
* *
86484 CAAATCTGCCTCCTTCTTATCT-GACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAAT
64 CAAATCTGCATCCTTCTTATCTAG-CGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCAAT
* * * * ** *
86548 TTGATGTATGGTTACCACCTTGGTCAGATTCT-TTTCATTC-TGAT-TTGAT
128 TTGACGTATGGTTACCACCCTAGTCA-AATCTGCCTCATTCTTG-TCTAG-T
86597 ATATGGTTACCACCCTGGTCA
1 ATATGGTTACCACCCTGGTCA
86618 AATCCGCCTC
Statistics
Matches: 170, Mismatches: 23, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
176 21 0.12
177 5 0.03
178 140 0.82
179 4 0.02
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (176 bp):
ATATGGTTACCACCCTGGTCAGATTCTTTTCATTTTGATTTGACACATGGTTACCACCCTAGTCA
AATCTGCATCCTTCTTATCTAGCGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCCAATTTG
ACGTATGGTTACCACCCTAGTCAAATCTGCCTCATTCTTGTCTAGT
Found at i:86645 original size:132 final size:133
Alignment explanation
Indices: 86418--86751 Score: 456
Period size: 132 Copynumber: 2.5 Consensus size: 133
86408 TCTTGTCTAG
* * * *
86418 TGTATGGTTACCACCCTGGTCAGATTTTTTTTTTATTTTGATTTGACATATGGTTACCACCCTAG
1 TGTATGGTTACCACCTTGGTCAGA-TTTCTTTTCATTCTGATTTGACATATGGTTACCACCCTAG
* *
86483 TCAAATCTGCCTCCTTCTTATCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAAT
65 TCAAATCCGCCTCCTTCCTATCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAAT
86548 TTGA
130 TTGA
* *
86552 TGTATGGTTACCACCTTGGTCAGA-TTCTTTTCATTCTGATTTGATATATGGTTACCACCCTGGT
1 TGTATGGTTACCACCTTGGTCAGATTTCTTTTCATTCTGATTTGACATATGGTTACCACCCTAGT
* * *
86616 CAAATCCGCCTCTTTCCTATCTGACGTATGGTTACCACCTTAGTCAGATTCTTTTCATTTTAATT
66 CAAATCCGCCTCCTTCCTATCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATT
86681 TGA
131 TGA
* * * * * * * * * *
86684 GGTATGGTTACCACCTTGGTCAAATCTGTCTCCTTTCTG-TTTAACGTATGGTTATCACCCTAGT
1 TGTATGGTTACCACCTTGGTCAGATTTCTTTTCATTCTGATTTGACATATGGTTACCACCCTAGT
86748 CAAA
66 CAAA
86752 CGATTTGCAT
Statistics
Matches: 176, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
132 144 0.82
133 9 0.05
134 23 0.13
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (133 bp):
TGTATGGTTACCACCTTGGTCAGATTTCTTTTCATTCTGATTTGACATATGGTTACCACCCTAGT
CAAATCCGCCTCCTTCCTATCTGACGTATGGTTACCACCCTAGTCAGATTCTTTTCATTCTAATT
TGA
Found at i:86897 original size:42 final size:42
Alignment explanation
Indices: 86823--87172 Score: 272
Period size: 42 Copynumber: 8.3 Consensus size: 42
86813 TATCTGATAC
* * * * *
86823 CTTTGATCCTTTGTCTACCCTTTGACTTAGACCCGAGAGATTT
1 CTTT-ATCTTTTGTCTACCCATCGGCTTAGACCCGAGAGACTT
* * * *
86866 CTTTATCTTTTGTCTACCCATCAGCTCAGACCCAAGAGACAT
1 CTTTATCTTTTGTCTACCCATCGGCTTAGACCCGAGAGACTT
* * *
86908 CTTTATCTTTTGTCTGCCCATTGGCTTAGACTCGAGAGACTTT
1 CTTTATCTTTTGTCTACCCATCGGCTTAGACCCGAGAGAC-TT
* * * * *
86951 CTTTATCTTTTGTTTGCTCATCGGCTTAGACCTGAGGGACTT
1 CTTTATCTTTTGTCTACCCATCGGCTTAGACCCGAGAGACTT
* * * * *
86993 CTTTATTTTTTGTCTACCCGTTGGCTTAGACTCGGGAGACTT
1 CTTTATCTTTTGTCTACCCATCGGCTTAGACCCGAGAGACTT
* * ** *
87035 CTTTGTCTTTTGACTACCCATCGGCTTAGACTTGAAAGACTT
1 CTTTATCTTTTGTCTACCCATCGGCTTAGACCCGAGAGACTT
* * *** * * *
87077 TTTTCATATTTTGTCTACTTGTTGGCTTAGACTTC-AAAGACTTT
1 CTTT-ATCTTTTGTCTACCCATCGGCTTAGAC-CCGAGAGAC-TT
* * * * *
87121 CTTTATCTTTTGTCTACCC-TAGGCTCAGGCCTGGGAGACTT
1 CTTTATCTTTTGTCTACCCATCGGCTTAGACCCGAGAGACTT
*
87162 CTTCATCTTTT
1 CTTTATCTTTT
87173 TGTTTGTCAG
Statistics
Matches: 241, Mismatches: 61, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
41 12 0.05
42 146 0.61
43 77 0.32
44 6 0.02
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.41
Consensus pattern (42 bp):
CTTTATCTTTTGTCTACCCATCGGCTTAGACCCGAGAGACTT
Found at i:87157 original size:127 final size:128
Alignment explanation
Indices: 86863--87172 Score: 315
Period size: 127 Copynumber: 2.4 Consensus size: 128
86853 ACCCGAGAGA
* *** * * *
86863 TTTCTTTATCTTTTGTCTACCCATCA-GCTCAGACCCAAGAGACATCTTTATCTTTTGTCTGCCC
1 TTTCTTTATCTTTTGTCTACCCAT-AGGCTCAGGCCTGGGAGACTTCTTTATCTTTTGACTACCC
* * * * * * **
86927 ATTGGCTTAGACTCGAGAGACTTTCTTTATCTTTTGTTTGCTCATCGGCTTAGACCTGAGGGAC
65 ATCGGCTTAGACTCGAAAGACTTTCTTTATATTTTGTCTACTCATCGGCTTAGACCTCAAAGAC
* * * * * *
86991 -TTCTTTATTTTTTGTCTACCCGTTGGCTTA-GACTCGGGAGACTTCTTTGTCTTTTGACTACCC
1 TTTCTTTATCTTTTGTCTACCCATAGGCTCAGGCCT-GGGAGACTTCTTTATCTTTTGACTACCC
* ** * *
87054 ATCGGCTTAGACTTGAAAGACTTT-TTTCATATTTTGTCTACTTGTTGGCTTAGACTTCAAAGAC
65 ATCGGCTTAGACTCGAAAGACTTTCTTT-ATATTTTGTCTACTCATCGGCTTAGACCTCAAAGAC
*
87118 TTTCTTTATCTTTTGTCTACCC-TAGGCTCAGGCCTGGGAGACTTCTTCATCTTTT
1 TTTCTTTATCTTTTGTCTACCCATAGGCTCAGGCCTGGGAGACTTCTTTATCTTTT
87173 TGTTTGTCAG
Statistics
Matches: 145, Mismatches: 32, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
126 4 0.03
127 118 0.81
128 23 0.16
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (128 bp):
TTTCTTTATCTTTTGTCTACCCATAGGCTCAGGCCTGGGAGACTTCTTTATCTTTTGACTACCCA
TCGGCTTAGACTCGAAAGACTTTCTTTATATTTTGTCTACTCATCGGCTTAGACCTCAAAGAC
Found at i:87174 original size:85 final size:85
Alignment explanation
Indices: 86832--87175 Score: 338
Period size: 85 Copynumber: 4.1 Consensus size: 85
86822 CCTTTGATCC
* * *
86832 TTTGTCTACCCTTTGACTTAGACCCGAGAGA-TTTCTTTATCTTTTGTCTACCCATCA-GCTCAG
1 TTTGTCTACCCGTTGGCTTAGACTCGAGAGACTTTCTTTATCTTTTGTCTACCCAT-AGGCTCAG
** * * *
86895 ACCCAAGAGACATCTTTATCT
65 ACCTGAGAGACTTCTTCATTT
* * * * * * *
86916 TTTGTCTGCCCATTGGCTTAGACTCGAGAGACTTTCTTTATCTTTTGTTTGCTCATCGGCTTAGA
1 TTTGTCTACCCGTTGGCTTAGACTCGAGAGACTTTCTTTATCTTTTGTCTACCCATAGGCTCAGA
* *
86981 CCTGAGGGACTTCTTTATTT
66 CCTGAGAGACTTCTTCATTT
* * * * *
87001 TTTGTCTACCCGTTGGCTTAGACTCGGGAGAC-TTCTTTGTCTTTTGACTACCCATCGGCTTAGA
1 TTTGTCTACCCGTTGGCTTAGACTCGAGAGACTTTCTTTATCTTTTGTCTACCCATAGGCTCAGA
* * * *
87065 CTTGAAAGACTTTTTTCATAT
66 CCTGAGAGAC-TTCTTCATTT
** *
87086 TTTGTCTACTTGTTGGCTTAGACTTC-AAAGACTTTCTTTATCTTTTGTCTACCC-TAGGCTCAG
1 TTTGTCTACCCGTTGGCTTAGAC-TCGAGAGACTTTCTTTATCTTTTGTCTACCCATAGGCTCAG
* *
87149 GCCTGGGAGACTTCTTCATCTT
65 ACCTGAGAGACTTCTTCAT-TT
87171 TTTGT
1 TTTGT
87176 TTGTCAGTCG
Statistics
Matches: 212, Mismatches: 42, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
84 68 0.32
85 123 0.58
86 21 0.10
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.41
Consensus pattern (85 bp):
TTTGTCTACCCGTTGGCTTAGACTCGAGAGACTTTCTTTATCTTTTGTCTACCCATAGGCTCAGA
CCTGAGAGACTTCTTCATTT
Found at i:87205 original size:43 final size:43
Alignment explanation
Indices: 87153--87258 Score: 144
Period size: 42 Copynumber: 2.5 Consensus size: 43
87143 GCTCAGGCCT
*
87153 GGGAGACTTCTTCATCTTTTTGTTTGTCAGTCGACTCAAACCC
1 GGGAGACTTCTTCATCTTTTTGTTTGCCAGTCGACTCAAACCC
* * * *
87196 GGGAGACTTCTAT-ATC-CTTTGTTTGCCCGTCGGCTCAAGCCC
1 GGGAGACTTCT-TCATCTTTTTGTTTGCCAGTCGACTCAAACCC
87238 GGGAGACTTCTTCATCTTTTT
1 GGGAGACTTCTTCATCTTTTT
87259 ATCTACCCGT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
41 1 0.02
42 35 0.65
43 17 0.31
44 1 0.02
ACGTcount: A:0.16, C:0.26, G:0.21, T:0.37
Consensus pattern (43 bp):
GGGAGACTTCTTCATCTTTTTGTTTGCCAGTCGACTCAAACCC
Found at i:88572 original size:24 final size:25
Alignment explanation
Indices: 88544--88590 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
88534 TCAAATTTCT
88544 TCAAAT-ATTATT-ATAAAATTCCCA
1 TCAAATCATTATTCA-AAAATTCCCA
*
88568 TCAAATCATTTTTCAAAAATTCC
1 TCAAATCATTATTCAAAAATTCC
88591 TTCATTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 6 0.30
25 13 0.65
26 1 0.05
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (25 bp):
TCAAATCATTATTCAAAAATTCCCA
Found at i:88888 original size:168 final size:164
Alignment explanation
Indices: 88515--89158 Score: 611
Period size: 167 Copynumber: 3.9 Consensus size: 164
88505 TTCATTGAAA
* * * * * ** * ** * *
88515 TTTTCTTGAGTTTTAAATATCAAATTTCTTCAAATATTATTATAAAATTCCCATCAAATCATTTT
1 TTTTCTTG-GTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAATTT
* * * * * * * * *
88580 TCAAAAATTCCTTCATTTTCTTGACTTTATAAATTTTTTCCTTAAAATTCTTTTTTTTTCAAAAT
65 T-AAAAATTCATTCATTTTCTTGAGTTTTTGAATTTTTTCTTTGAAATT-TCTTTTTTCCAAAAA
** ** ** *
88645 A-CGTTATTTTCTACTTCGTATTTTTTTTTGAAGAGAT
128 ATC-AAATTTTCTACTTCGTAAATTTTTTTGGGGGGAT
*
88682 TTTTCTTGGTTTTATTTTTTAAAATTCATCAAATATTATTATTTATATT-ATATTAAATCAATTT
1 TTTTCTTGGTTTTAATTTTTAAAATTCATCAAATATTATTATTTAT-TTCATATTAAATCAATTT
*
88746 TCAAAAATTC-TATCATTTTCTTGAGTTTTTGAATTTTTTCATTGAAATTTCATTTTTTCCAAAA
65 T-AAAAATTCAT-TCATTTTCTTGAGTTTTTGAATTTTTTCTTTGAAATTTC-TTTTTTCCAAAA
*
88810 AATCAAAGTTTTTTACTTCGTAAATTTTTTTAGGGGGGAT
127 AATCAAA-TTTTCTACTTCGTAAATTTTTTT-GGGGGGAT
*
88850 TTTTCTTGGTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATAATAAATCAATTTT
1 TTTTCTTGGTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAATTTT
* * * *
88915 GAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTTCTTTGAAATTCCTCTATTTT-CGAAAAA
66 AAAAATTCATTCATTTTCTTGAGTTTTTGAATTTTTTCTTTGAAATT--TCTTTTTTCCAAAAAA
** * * *
88979 TGGACTTTTCTAC-TCTATAAATTGTTTTGGGGGGAT
129 TCAAATTTTCTACTTC-GTAAATTTTTTTGGGGGGAT
* * * * *
89015 TTTTCTTGCTTTTTTAATTATTAAAATCCACCAAATATTATTATTTATTTCATATTAAATCAGTT
1 TTTTCTTG--GTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAATT
*
89080 GTAAATAATTCATTCATTTT-TATGAG-TTTTGAATTTTTTTCTTTGAAATCCTT-TTTTTTCCA
64 TTAAA-AATTCATTCATTTTCT-TGAGTTTTTGAA-TTTTTTCTTTGAAAT--TTCTTTTTTCCA
* *
89142 AAAAATCGAGTTTTCTA
124 AAAAATCAAATTTTCTA
89159 TTCCATAAAT
Statistics
Matches: 403, Mismatches: 55, Indels: 37
0.81 0.11 0.07
Matches are distributed among these distances:
165 20 0.05
166 112 0.28
167 147 0.36
168 121 0.30
169 2 0.00
170 1 0.00
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (164 bp):
TTTTCTTGGTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAATTTT
AAAAATTCATTCATTTTCTTGAGTTTTTGAATTTTTTCTTTGAAATTTCTTTTTTCCAAAAAATC
AAATTTTCTACTTCGTAAATTTTTTTGGGGGGAT
Found at i:89188 original size:167 final size:164
Alignment explanation
Indices: 88679--89225 Score: 583
Period size: 168 Copynumber: 3.3 Consensus size: 164
88669 TTTTTGAAGA
*
88679 GATTTTTCTTGGTTTTATTTTTTAAAATTCATCAAATATTATTATTTATATT-ATATTAAATCAA
1 GATTTTTCTTGGTTTTAATTTTTAAAATTCATCAAATATTATTATTTAT-TTCATATTAAATCAA
*
88743 TTTTCAAAAATTC-TATCATTTTCT-TGAGTTTTTGAATTTTTTCATTGAAAT--TTCATTTTTT
65 TTTT-AAAAATTCAT-TCATTTT-TATGAGTTTTTGAATTTTTTCTTTGAAATCCTT--TTTTTT
* * *
88804 CCAAAAAATCAAAGTTTTTTACTT-CGTAAATTTTTTTAGGGGG
125 CCAAAAAATC-GAGTTTTCTA-TTCCATAAA--TTTTTAGGGGG
*
88847 GATTTTTCTTGGTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATAATAAATCAAT
1 GATTTTTCTTGGTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAAT
* * * * *
88912 TTTGAAAATTCATTCATTTTCATGAGTTTTTGAATTTTTTCTTTGAAATTCCTCTATTTT-CGAA
66 TTTAAAAATTCATTCATTTTTATGAGTTTTTGAATTTTTTCTTTGAAA-TCCTTTTTTTTCCAAA
* * * * *
88976 AAATGGACTTTTCTACTCTATAAATTGTTTTGGGGG
130 AAATCGAGTTTTCTATTCCATAAATT-TTTAGGGGG
* * * *
89012 GATTTTTCTTGCTTTTTTAATTATTAAAATCCACCAAATATTATTATTTATTTCATATTAAATCA
1 GATTTTTCTTG--GTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCA
* *
89077 GTTGTAAATAATTCATTCATTTTTATGAG-TTTTGAATTTTTTTCTTTGAAATCCTTTTTTTTCC
64 ATTTTAAA-AATTCATTCATTTTTATGAGTTTTTGAA-TTTTTTCTTTGAAATCCTTTTTTTTCC
* * *
89141 AAAAAATCGAGTTTTCTATTCCATAAATATTTTCGAGAG
127 AAAAAATCGAGTTTTCTATTCCATAAAT-TTTTAGGGGG
* * * * *
89180 GA-TTTTCTTGATTTAAAATTTTCAAACTGCA-CATAATATTATTATT
1 GATTTTTCTTGGTTT-TAATTTTTAAAATTCATCA-AATATTATTATT
89226 AAACTCTTAT
Statistics
Matches: 322, Mismatches: 41, Indels: 34
0.81 0.10 0.09
Matches are distributed among these distances:
164 2 0.01
165 25 0.08
166 34 0.11
167 124 0.39
168 135 0.42
169 1 0.00
170 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.09, T:0.51
Consensus pattern (164 bp):
GATTTTTCTTGGTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAATCAAT
TTTAAAAATTCATTCATTTTTATGAGTTTTTGAATTTTTTCTTTGAAATCCTTTTTTTTCCAAAA
AATCGAGTTTTCTATTCCATAAATTTTTAGGGGG
Found at i:89459 original size:14 final size:14
Alignment explanation
Indices: 89429--89491 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
89419 AAATTTTAGC
89429 TTAATTTTTA-AATT
1 TTAATTTTTATAA-T
89443 TTAATTTTTATAAT
1 TTAATTTTTATAAT
89457 TTAATCCTTTT-T-A-
1 TTAAT--TTTTATAAT
*
89470 TTAATTTTTATAGT
1 TTAATTTTTATAAT
*
89484 ATAATTTT
1 TTAATTTT
89492 ATGAATGATA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
11 4 0.10
12 1 0.02
13 5 0.12
14 24 0.59
15 3 0.07
16 4 0.10
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (14 bp):
TTAATTTTTATAAT
Found at i:95131 original size:19 final size:18
Alignment explanation
Indices: 95093--95141 Score: 75
Period size: 19 Copynumber: 2.8 Consensus size: 18
95083 ACACACCAGA
95093 TGTATCGATACA--TTAT
1 TGTATCGATACATGTTAT
95109 TGTATCGATACATGTTCAT
1 TGTATCGATACATGTT-AT
95128 TGTATCGATACATG
1 TGTATCGATACATG
95142 AAACTGTAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
16 12 0.40
18 2 0.07
19 16 0.53
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (18 bp):
TGTATCGATACATGTTAT
Found at i:95194 original size:20 final size:20
Alignment explanation
Indices: 95169--95222 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
95159 CTACCACTGT
*
95169 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
*
95189 TTGTATCGATATATGATGAA
1 TTGTATCGATACATGATGAA
95209 TTGTATCGATACAT
1 TTGTATCGATACAT
95223 TACTTCTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 29 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:98331 original size:13 final size:13
Alignment explanation
Indices: 98313--98338 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98303 CAATTTTTTG
98313 TGTATCGATACAT
1 TGTATCGATACAT
98326 TGTATCGATACAT
1 TGTATCGATACAT
98339 GCTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:98335 original size:33 final size:33
Alignment explanation
Indices: 98293--98357 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
98283 TACAAGCCAA
* *
98293 TGTATCGATACAAT-TTTTTGTGTATCGATACAT
1 TGTATCGATAC-ATGCTTTGGTGTATCGATACAT
98326 TGTATCGATACATGCTTTGGTGTATCGATACA
1 TGTATCGATACATGCTTTGGTGTATCGATACA
98358 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 2 0.07
33 27 0.93
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATGCTTTGGTGTATCGATACAT
Found at i:100464 original size:21 final size:20
Alignment explanation
Indices: 100435--100475 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
100425 GACTAGTGTG
*
100435 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGTGACCT
*
100456 GGGAGTGCCGGTCGTGACCT
1 GGGACTGCCGGTCGTGACCT
100476 AGTGGTGCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.10, C:0.27, G:0.41, T:0.22
Consensus pattern (20 bp):
GGGACTGCCGGTCGTGACCT
Found at i:100927 original size:13 final size:13
Alignment explanation
Indices: 100909--100947 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
100899 ATAATCCCCC
*
100909 TGTATCGATACAG
1 TGTATCGATACAA
100922 TGTATCGATACAA
1 TGTATCGATACAA
100935 TGTATCGATACAA
1 TGTATCGATACAA
100948 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:103892 original size:20 final size:21
Alignment explanation
Indices: 103869--103921 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
103859 ACAATTCAAA
***
103869 GTATCGATACATGTTGAA-AT
1 GTATCGATACATGAAAAAGAT
103889 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGAAAAAGAT
103910 GTATCGATACAT
1 GTATCGATACAT
103922 TTCTTGGCAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 15 0.52
21 14 0.48
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.30
Consensus pattern (21 bp):
GTATCGATACATGAAAAAGAT
Found at i:103978 original size:13 final size:13
Alignment explanation
Indices: 103960--103985 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
103950 TACAGTAAGT
103960 ATGTATCGATACA
1 ATGTATCGATACA
103973 ATGTATCGATACA
1 ATGTATCGATACA
103986 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:108025 original size:15 final size:15
Alignment explanation
Indices: 108005--108035 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
107995 TAAAAATGTC
*
108005 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
108020 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
108035 C
1 C
108036 CAAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:110131 original size:13 final size:13
Alignment explanation
Indices: 110113--110151 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
110103 ACATTTTTCT
110113 TTGTATCGATACA
1 TTGTATCGATACA
110126 TTGTATCGATACA
1 TTGTATCGATACA
110139 TTGTATCGATACA
1 TTGTATCGATACA
110152 GGGTGATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:110315 original size:20 final size:20
Alignment explanation
Indices: 110272--110317 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
110262 AAATCTTTTA
110272 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
110293 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
110313 CAAAA
1 CAAAA
110318 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:112428 original size:13 final size:13
Alignment explanation
Indices: 112410--112435 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
112400 TACAGCAAGT
112410 ATGTATCGATACA
1 ATGTATCGATACA
112423 ATGTATCGATACA
1 ATGTATCGATACA
112436 CAAAAAAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:116741 original size:13 final size:13
Alignment explanation
Indices: 116723--116748 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
116713 CAATTTTTTG
116723 TGTATCGATACAT
1 TGTATCGATACAT
116736 TGTATCGATACAT
1 TGTATCGATACAT
116749 ACTTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:116745 original size:33 final size:33
Alignment explanation
Indices: 116703--116767 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
116693 TACAAGCTAA
* *
116703 TGTATCGATACA-ATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-CTTTGGTGTATCGATACAT
116736 TGTATCGATACATACTTTGGTGTATCGATACA
1 TGTATCGATACATACTTTGGTGTATCGATACA
116768 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATACTTTGGTGTATCGATACAT
Found at i:117553 original size:20 final size:19
Alignment explanation
Indices: 117525--117595 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
117515 ACCCTGAAAA
*
117525 GTATTGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* *
117545 GTATCGATACAGATTACAT
1 GTATCGATACACATTAAAT
**
117564 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
117585 GTATCGATACA
1 GTATCGATACA
117596 GGACATTGGC
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
19 5 0.12
20 35 0.83
21 2 0.05
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:117622 original size:34 final size:34
Alignment explanation
Indices: 117578--117663 Score: 136
Period size: 34 Copynumber: 2.5 Consensus size: 34
117568 TCGATACACA
*
117578 CAAATATGTATCGATACAGGACATTGGCAGTAGC
1 CAAATTTGTATCGATACAGGACATTGGCAGTAGC
* * *
117612 CAAATTTGTATCGATATAGGTCATTGTCAGTAGC
1 CAAATTTGTATCGATACAGGACATTGGCAGTAGC
117646 CAAATTTGTATCGATACA
1 CAAATTTGTATCGATACA
117664 CAAAATATGT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 47 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (34 bp):
CAAATTTGTATCGATACAGGACATTGGCAGTAGC
Found at i:117772 original size:45 final size:47
Alignment explanation
Indices: 117715--117810 Score: 133
Period size: 45 Copynumber: 2.1 Consensus size: 47
117705 TTCACTGTTC
* * *
117715 ATCACTGTTCATGTATCG-ATATATCACTGTTCA-CACTATTCACGT
1 ATCACTATTCATGTATCGTAAAAATCACTGTTCATCACTATTCACGT
*
117760 ATCACTATTCATGTATCGTTAAAAATCACTGTTCATCACTATTCATGT
1 ATCACTATTCATGTATCG-TAAAAATCACTGTTCATCACTATTCACGT
117808 ATC
1 ATC
117811 GATACAGTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
45 17 0.39
47 13 0.30
48 14 0.32
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.39
Consensus pattern (47 bp):
ATCACTATTCATGTATCGTAAAAATCACTGTTCATCACTATTCACGT
Found at i:117823 original size:13 final size:13
Alignment explanation
Indices: 117805--117829 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
117795 TCACTATTCA
117805 TGTATCGATACAG
1 TGTATCGATACAG
117818 TGTATCGATACA
1 TGTATCGATACA
117830 TCATAAATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:123694 original size:89 final size:90
Alignment explanation
Indices: 123539--123765 Score: 341
Period size: 89 Copynumber: 2.5 Consensus size: 90
123529 GAAAAAGTTA
* ** *
123539 CATTTTTACCCAGATGTATTGATACACTTTTCAATGTATCGATACATGTATGAATGTATCAATAC
1 CATTTTTACCCAGATGTATCGATACA--TTGAAATGTATCGATACATGTATGAACGTATCAATAC
*
123604 ATTCTTCAATGTATCGATACATTTTGT
64 ATTCTTCAATGTATCGATACATTCTGT
*
123631 C-TTTTTACCCAGATGTATCGATACATTGAAATGTATCGATACATGTATGAACGTATCGATACAT
1 CATTTTTACCCAGATGTATCGATACATTGAAATGTATCGATACATGTATGAACGTATCAATACAT
123695 TCTTCAATGTATCGATACATTCTGT
66 TCTTCAATGTATCGATACATTCTGT
*
123720 CATTTTT-CCTAGATGTATCGATACATTGAAAAATGTATCGATACAT
1 CATTTTTACCCAGATGTATCGATACATTG--AAATGTATCGATACAT
123766 CTAATTAAAA
Statistics
Matches: 125, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
89 80 0.64
90 5 0.04
91 39 0.31
92 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (90 bp):
CATTTTTACCCAGATGTATCGATACATTGAAATGTATCGATACATGTATGAACGTATCAATACAT
TCTTCAATGTATCGATACATTCTGT
Found at i:123706 original size:20 final size:19
Alignment explanation
Indices: 123643--123715 Score: 76
Period size: 20 Copynumber: 3.8 Consensus size: 19
123633 TTTTACCCAG
*
123643 ATGTATCGATACA-TTGAA
1 ATGTATCGATACATTTTAA
* *
123661 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-TTTAA
* *
123681 ACGTATCGATACATTCTTCA
1 ATGTATCGATACATT-TTAA
123701 ATGTATCGATACATT
1 ATGTATCGATACATT
123716 CTGTCATTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
18 13 0.29
19 1 0.02
20 31 0.69
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGTATCGATACATTTTAA
Found at i:123717 original size:20 final size:19
Alignment explanation
Indices: 123552--123628 Score: 91
Period size: 20 Copynumber: 3.9 Consensus size: 19
123542 TTTTACCCAG
*
123552 ATGTATTGATACACTTTTCA
1 ATGTATCGATACA-TTTTCA
* *
123572 ATGTATCGATACATGTATGA
1 ATGTATCGATACAT-TTTCA
*
123592 ATGTATCAATACATTCTTCA
1 ATGTATCGATACATT-TTCA
123612 ATGTATCGATACATTTT
1 ATGTATCGATACATTTT
123629 GTCTTTTTAC
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
19 4 0.08
20 44 0.92
ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42
Consensus pattern (19 bp):
ATGTATCGATACATTTTCA
Found at i:131617 original size:20 final size:20
Alignment explanation
Indices: 131592--131666 Score: 107
Period size: 20 Copynumber: 3.8 Consensus size: 20
131582 AAAAAGATAG
131592 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
*
131612 AATGTATCGATACATT-CAT
1 AATGTATCGATACATTGAAT
*
131631 ACATGTATCGATACATTGAAG
1 A-ATGTATCGATACATTGAAT
*
131652 AATGTATTGATACAT
1 AATGTATCGATACAT
131667 CTGGGTAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 3 0.06
20 44 0.90
21 2 0.04
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTGAAT
Found at i:131687 original size:71 final size:71
Alignment explanation
Indices: 131612--131748 Score: 197
Period size: 71 Copynumber: 1.9 Consensus size: 71
131602 TACATTGAAT
* * *
131612 AATGTATCGATACATTCATA-CATGTATCGATACATTGA-AGAATGTATTGATACATCTGGGTAA
1 AATGTATCGATACATTCA-AGAATGTATCGATACATTCATA-AATGTATCGATACATCTGGGTAA
131675 AAAGACAA
64 AAAGACAA
* *
131683 AATGTATCGATACATTGAAGAATGTATCGATACATTCATACATGTATCGATACATCTGGGTAAAA
1 AATGTATCGATACATTCAAGAATGTATCGATACATTCATAAATGTATCGATACATCTGGGTAAAA
131748 A
66 A
131749 TGTGACTTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
70 1 0.02
71 57 0.97
72 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (71 bp):
AATGTATCGATACATTCAAGAATGTATCGATACATTCATAAATGTATCGATACATCTGGGTAAAA
AGACAA
Found at i:131700 original size:91 final size:91
Alignment explanation
Indices: 131545--131737 Score: 287
Period size: 91 Copynumber: 2.1 Consensus size: 91
131535 TAACTAAATA
* *
131545 TATCGATACATTGAAAAATGTATCAAAACATCCAAGAAAAAAGATAGAATGTATCGATACATTGA
1 TATCGATACATTGAAAAATGTATCAAAACATCCAAGAAAAAAGACAAAATGTATCGATACATTGA
*
131610 ATAATGTATCGATACATTCATACATG
66 AGAATGTATCGATACATTCATACATG
* ** * *** *
131636 TATCGATACATTGAAGAATGTATTGATACATCTGGGTAAAAAGACAAAATGTATCGATACATTGA
1 TATCGATACATTGAAAAATGTATCAAAACATCCAAGAAAAAAGACAAAATGTATCGATACATTGA
131701 AGAATGTATCGATACATTCATACATG
66 AGAATGTATCGATACATTCATACATG
131727 TATCGATACAT
1 TATCGATACAT
131738 CTGGGTAAAA
Statistics
Matches: 91, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.29
Consensus pattern (91 bp):
TATCGATACATTGAAAAATGTATCAAAACATCCAAGAAAAAAGACAAAATGTATCGATACATTGA
AGAATGTATCGATACATTCATACATG
Found at i:131708 original size:20 final size:20
Alignment explanation
Indices: 131682--131737 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
131672 TAAAAAGACA
*
131682 AAATGTATCGATACATTGA-
1 AAATGTATCGATACATTCAT
131701 AGAATGTATCGATACATTCAT
1 A-AATGTATCGATACATTCAT
*
131722 ACATGTATCGATACAT
1 AAATGTATCGATACAT
131738 CTGGGTAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 1 0.03
20 31 0.94
21 1 0.03
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.32
Consensus pattern (20 bp):
AAATGTATCGATACATTCAT
Found at i:132515 original size:48 final size:48
Alignment explanation
Indices: 132434--132558 Score: 169
Period size: 48 Copynumber: 2.6 Consensus size: 48
132424 AGAGGAGTGC
** * * *
132434 CAATGTGCCAATTCTAGGCCAACGACATCGAGCTAAGGGAAAAATGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
* * *
132482 CAATGTGCTGATTCAAGGCCAGCAACATTGAGCTGAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
*
132530 TAATGTGCTGATTCAAGGCCAGCGACATT
1 CAATGTGCTGATTCAAGGCCAGCGACATT
132559 AAGTTAATAA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 67 1.00
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAATGGA
Found at i:132807 original size:30 final size:29
Alignment explanation
Indices: 132689--133470 Score: 677
Period size: 30 Copynumber: 26.4 Consensus size: 29
132679 TACTAACTTA
* *
132689 TGTGGGCTTTG-AAGGGTATGCCACTAACT
1 TGTGGGCTTTGAAAGAGT-TGCCACTGACT
* * *
132718 TGCGGGCTTTGAAAG-GGTGTCACTGACT
1 TGTGGGCTTTGAAAGAGTTGCCACTGACT
* * * *
132746 TGTGGGCTTTGAAAG-GGTGTCGCTAACT
1 TGTGGGCTTTGAAAGAGTTGCCACTGACT
132774 TGTGGGCTTTGAAAAGAGTTGCCACTGACTT
1 TGTGGGCTTTG-AAAGAGTTGCCACTGAC-T
*
132805 GTGTGGGCTTTGAAAG-GGTGCCACTGACT
1 -TGTGGGCTTTGAAAGAGTTGCCACTGACT
*
132834 TGTGGGCTTTGAAATG-GTATGCCACCGACT
1 TGTGGGCTTTGAAA-GAGT-TGCCACTGACT
* ** *
132864 TGTGGGCTTTAAAATG-GTATGCCACAAAAT
1 TGTGGGCTTTGAAA-GAGT-TGCCACTGACT
*
132894 TGTGGGCTTTGAAATGA--TGCCACTAACT
1 TGTGGGCTTTGAAA-GAGTTGCCACTGACT
* * *
132922 TGTGGTCTTTTG-AAGAGATGCCACTGGCT
1 TGTGGGC-TTTGAAAGAGTTGCCACTGACT
* *
132951 TGTGGGCTTTGAAAAGAGTTGCCACCGATTT
1 TGTGGGCTTTG-AAAGAGTTGCCACTGA-CT
*
132982 ATGTGGGCTTTGAAAG-GGTGCCACTGACT
1 -TGTGGGCTTTGAAAGAGTTGCCACTGACT
* *
133011 TGTGGGCTTTTG-AAGAGATGCCACTAACT
1 TGTGGGC-TTTGAAAGAGTTGCCACTGACT
*
133040 TATGGGCTTTGAAAAGAGTTGCCACTGACAT
1 TGTGGGCTTTG-AAAGAGTTGCCACTGAC-T
* * * *
133071 GTCTAGGCTTTGAAAG-GGTGCCACTAACT
1 -TGTGGGCTTTGAAAGAGTTGCCACTGACT
*
133100 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAGAGTTGCCACTGACT
*
133129 TATGGGCTTTGAAAAGAGTTGCCACTGACTT
1 TGTGGGCTTTG-AAAGAGTTGCCACTGAC-T
* *
133160 GTGTGGGCTTTGAAAG-GGTGCCACTAACT
1 -TGTGGGCTTTGAAAGAGTTGCCACTGACT
*
133189 TGTGGGCTTTTG-AAGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAGAGTTGCCACTGACT
* *
133218 TGTAGGCTTTGAAAAGAGTTGCCACCGACTT
1 TGTGGGCTTTG-AAAGAGTTGCCACTGAC-T
*
133249 GTGTGGGCTTTGAAAGGGTATGCCACT-AGCTT
1 -TGTGGGCTTTGAAAGAGT-TGCCACTGA-C-T
*
133281 ATGTGGGCTTTGAAAG-GGTGCCACTGACT
1 -TGTGGGCTTTGAAAGAGTTGCCACTGACT
* *
133310 TGTGGGCTTTTG-ACGAGATGCCACTGACT
1 TGTGGGC-TTTGAAAGAGTTGCCACTGACT
133339 TGTGGGCTTTGAAAAGAGTTGCCA-TCGACT
1 TGTGGGCTTTG-AAAGAGTTGCCACT-GACT
*
133369 TGTGTCGGCTTTGAAAGGGTATGCCACTGACT
1 TGTG--GGCTTTGAAAGAGT-TGCCACTGACT
* * *
133401 TGTGCGCTTTGAAAG-GGTGCCACTAACT
1 TGTGGGCTTTGAAAGAGTTGCCACTGACT
* ** *
133429 TGTGGGCTTTGAAACAAATGCCACTGACC
1 TGTGGGCTTTGAAAGAGTTGCCACTGACT
133458 TGTGGGCTTTGAA
1 TGTGGGCTTTGAA
133471 GAGATGAACG
Statistics
Matches: 633, Mismatches: 74, Indels: 92
0.79 0.09 0.12
Matches are distributed among these distances:
27 2 0.00
28 156 0.25
29 151 0.24
30 192 0.30
31 36 0.06
32 95 0.15
33 1 0.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (29 bp):
TGTGGGCTTTGAAAGAGTTGCCACTGACT
Found at i:133004 original size:89 final size:89
Alignment explanation
Indices: 132721--133476 Score: 780
Period size: 89 Copynumber: 8.5 Consensus size: 89
132711 ACTAACTTGC
* * * * * *
132721 GGGCTTTGAAAGGGTGTCACTGACTTGTGGGC-TTTGAA-AGGGTGTCGCTAACTTGTGGGCTTT
1 GGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTTGAAGA-GATGCCACTGACTTGTGGGCTTT
*
132784 GAAAAGAGTTGCCACTGACTTGTGT
65 GAAAAGAGTTGCCACCGACTTGTGT
* *
132809 GGGCTTTGAAAGGGTGCCACTGACTTGTGGGC-TTTGAA-ATGGTATGCCACCGACTTGTGGGCT
1 GGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTTGAAGA--G-ATGCCACTGACTTGTGGGCT
* **
132872 TT-AAAATG-GTATGCCA-CAAAAT-TGT
63 TTGAAAA-GAGT-TGCCACCGACTTGTGT
* * * *
132897 GGGCTTTGAAATGATGCCACTAACTTGTGGTCTTTTGAAGAGATGCCACTGGCTTGTGGGCTTTG
1 GGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGGCTTTG
* *
132962 AAAAGAGTTGCCACCGATTTATGT
66 AAAAGAGTTGCCACCGACTTGTGT
* * *
132986 GGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGAGATGCCACTAACTTATGGGCTTTG
1 GGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGGCTTTG
* * *
133051 AAAAGAGTTGCCACTGACATGTCT
66 AAAAGAGTTGCCACCGACTTGTGT
* *
133075 AGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTTGAAGAGATGCCACTGACTTATGGGCTTTG
1 GGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGGCTTTG
*
133140 AAAAGAGTTGCCACTGACTTGTGT
66 AAAAGAGTTGCCACCGACTTGTGT
*
133164 GGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTAGGCTTTG
1 GGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGGCTTTG
133229 AAAAGAGTTGCCACCGACTTGTGT
66 AAAAGAGTTGCCACCGACTTGTGT
* *
133253 GGGCTTTGAAAGGGTATGCCACTAGCTTATGTGGGC-TTTGAA-AGGGTGCCACTGACTTGTGGG
1 GGGCTTTGAAAGGG--TGCCACTAAC-T-TGTGGGCTTTTGAAGA-GATGCCACTGACTTGTGGG
* * *
133316 CTTTTG--ACGAGATGCCACTGAC-T-TGT
61 C-TTTGAAAAGAGTTGCCACCGACTTGTGT
* * *
133342 GGGCTTTGAAAAGAGTTGCCA-TCGACTTGTGTCGGC-TTTGAAAGGGTATGCCACTGACTTGTG
1 GGGCTTTG-AAAG-GGTGCCACT-AACTTGTG--GGCTTTTG-AAGAG-ATGCCACTGACTTGTG
* * **
133405 CGCTTTG-AAAG-GGTGCCACTAAC-T-TGT
59 GGCTTTGAAAAGAGTTGCCACCGACTTGTGT
*** * *
133432 GGGCTTTGAAACAAATGCCACTGACCTGTGGGC-TTTGAAGAGATG
1 GGGCTTTGAAA-GGGTGCCACTAACTTGTGGGCTTTTGAAGAGATG
133477 AACGTTTTAG
Statistics
Matches: 581, Mismatches: 60, Indels: 57
0.83 0.09 0.08
Matches are distributed among these distances:
85 3 0.01
86 4 0.01
87 37 0.06
88 81 0.14
89 318 0.55
90 59 0.10
91 43 0.07
92 25 0.04
93 11 0.02
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.30
Consensus pattern (89 bp):
GGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTTGAAGAGATGCCACTGACTTGTGGGCTTTG
AAAAGAGTTGCCACCGACTTGTGT
Found at i:134741 original size:1 final size:1
Alignment explanation
Indices: 134722--134821 Score: 56
Period size: 1 Copynumber: 100.0 Consensus size: 1
134712 TCTAGACCCA
* * * * * * ** * * **
134722 TTTTTTGTTTGTTTGTTTTTTGTTTGTTTTTTTTATTTTTAGTTTTTTTGTTTTTTTCTTGATTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** *
134787 TTTTTTGTTTTTTTTTTGGTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
134822 GTACGAAGAA
Statistics
Matches: 71, Mismatches: 28, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 71 1.00
ACGTcount: A:0.03, C:0.01, G:0.12, T:0.84
Consensus pattern (1 bp):
T
Found at i:134745 original size:11 final size:11
Alignment explanation
Indices: 134729--134823 Score: 81
Period size: 11 Copynumber: 8.5 Consensus size: 11
134719 CCATTTTTTG
134729 TTTGTTTGTTT
1 TTTGTTTGTTT
134740 TTTGTTTGTTT
1 TTTGTTTGTTT
*
134751 TTT-TTATTTTT
1 TTTGTT-TGTTT
*
134762 AGTTTTTTTGTTT
1 --TTTGTTTGTTT
134775 TTT-TCTTGATTT
1 TTTGT-TTG-TTT
134787 TTT-TTTGTTT
1 TTTGTTTGTTT
*
134797 TTTTTTTGGTTT
1 TTTGTTT-GTTT
134809 TTTGTTT-TTT
1 TTTGTTTGTTT
134819 TTTGT
1 TTTGT
134824 ACGAAGAACG
Statistics
Matches: 73, Mismatches: 3, Indels: 17
0.78 0.03 0.18
Matches are distributed among these distances:
10 17 0.23
11 30 0.41
12 17 0.23
13 7 0.10
14 2 0.03
ACGTcount: A:0.03, C:0.01, G:0.13, T:0.83
Consensus pattern (11 bp):
TTTGTTTGTTT
Found at i:134749 original size:19 final size:18
Alignment explanation
Indices: 134725--134823 Score: 87
Period size: 19 Copynumber: 5.3 Consensus size: 18
134715 AGACCCATTT
134725 TTTGTTTGTTTGTTTTTTG
1 TTTGTTT-TTTGTTTTTTG
*
134744 TTTGTTTTTTTTATTTTTAG
1 TTTGTTTTTTGT-TTTTT-G
*
134764 TTT-TTTTGTTTTTTTCTTG
1 TTTGTTTT-TTGTTTT-TTG
*
134783 ATTT-TTTTTTGTTTTTTT
1 -TTTGTTTTTTGTTTTTTG
134801 TTTGGTTTTTTGTTTTTT-
1 TTT-GTTTTTTGTTTTTTG
134819 TTTGT
1 TTTGT
134824 ACGAAGAACG
Statistics
Matches: 70, Mismatches: 3, Indels: 16
0.79 0.03 0.18
Matches are distributed among these distances:
17 5 0.07
18 9 0.13
19 39 0.56
20 17 0.24
ACGTcount: A:0.03, C:0.01, G:0.13, T:0.83
Consensus pattern (18 bp):
TTTGTTTTTTGTTTTTTG
Found at i:148585 original size:20 final size:20
Alignment explanation
Indices: 148539--148616 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
148529 GAAAAAAGAT
* *
148539 AAAATGTATCGATA-AGTTGA
1 AAAATGTATCAATACA-TTCA
* *
148559 AGAATGTATCGATACATTCA
1 AAAATGTATCAATACATTCA
* * *
148579 TACATGTATCAATACATTGA
1 AAAATGTATCAATACATTCA
148599 AAAATGTATCAATACATT
1 AAAATGTATCAATACATT
148617 TAGGTAAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
20 47 0.98
21 1 0.02
ACGTcount: A:0.44, C:0.12, G:0.13, T:0.32
Consensus pattern (20 bp):
AAAATGTATCAATACATTCA
Found at i:149302 original size:48 final size:48
Alignment explanation
Indices: 149240--149371 Score: 203
Period size: 48 Copynumber: 2.8 Consensus size: 48
149230 AGAGGAGTGC
**
149240 CAATGTGCCAATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGA
1 CAATGTGCTGATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGA
* *
149288 CAATGTGCTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGCTGATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGA
*
149336 CAATGTGCTGATTCAAGGCCAGCGACATTC-AGCTAA
1 CAATGTGCTGATTCAAGGCCAACGACA-TCGAGCTAA
149372 TAAATGTGGC
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
48 76 0.99
49 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.18
Consensus pattern (48 bp):
CAATGTGCTGATTCAAGGCCAACGACATCGAGCTAAGGGAAAAATGGA
Found at i:149914 original size:89 final size:85
Alignment explanation
Indices: 149480--150308 Score: 605
Period size: 89 Copynumber: 9.4 Consensus size: 85
149470 TTTTAAAAAA
* * * * * * *
149480 GGTGCCACTAACTTATGTGAGCTTTG-AAGGATACGCCACTGACTTGCGGGCCTTGAAAG-GGTG
1 GGTGCCACTGAC-T-TGTGGGCTTTGAAAGGAT--GCCACTAACTTGTGGGCTTTAAAAGAGTTG
*
149543 TCACTGACTTGTGGGCTTTGAAAG
62 CCACTGACTTGTGGGCTTTGAAAG
** * * *
149567 AATGCTACTAACTTGTGGGCTTTGAAATGG-TGCCACTGACTTGTGGGCTTTAAAAGAGTTGCCA
1 GGTGCCACTGACTTGTGGGCTTTGAAA-GGATGCCACTAACTTGTGGGCTTTAAAAGAGTTGCCA
*
149631 CCGACTTGTGTGGGCTTTGAAAG
65 CTGAC-T-TGTGGGCTTTGAAAG
* ** * * * *
149654 GGTGCCACCGACTTGTGGGCTTTGAAATGGTATGCCACTGCCTTGTGAGCTTTGAAAG-GATGAC
1 GGTGCCACTGACTTGTGGGCTTTGAAA-GG-ATGCCACTAACTTGTGGGCTTTAAAAGAGTTGCC
* * *
149718 ACTAACTTATGGTCTTTTG-AAG
64 ACTGACTTGTGGGC-TTTGAAAG
* * * * *
149740 AGATGCCACTAACTTGTGGGCTTTGAAAGGAGTTGCCA-TCGACTTGTGTGGGCTTTGAAAGGGT
1 -GGTGCCACTGACTTGTGGGCTTTGAAAGGA--TGCCACT-AAC-T-TGTGGGCTTTAAAAGAGT
*
149804 ATGCCACTAACTTATGTGGGCTTTGAAAG
60 -TGCCACTGAC-T-TGTGGGCTTTGAAAG
* * * *
149833 GGTGTCACTGACTTTTGGGCTTTTGAAAAGATGCCAGTAACTTGTGGGCTTTAAAAAGAGTTGCC
1 GGTGCCACTGACTTGTGGGC-TTTGAAAGGATGCCACTAACTTGTGGGCTTT-AAAAGAGTTGCC
* *
149898 ACCGACTTGTGCGGGCTTTAAAAG
64 ACTGACTTGT--GGGCTTTGAAAG
* * ** * *
149922 GGTATGCCACTGACTTGTGGGCTTTGAAAGGATGCCATTAACTTGTGGTCTTTTGAAGAGATGTC
1 GG--TGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGAGTTGCC
149987 ACTGACTTGTGGGCTTTGAAAAG
64 ACTGACTTGTGGGCTTTG-AAAG
* * * ** **
150010 AGTTGCCACCGACTTGTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCTTTTGAAGAAATGC
1 -GGTGCCACTGAC-T-TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGAGTTGC
*
150075 CACTAACTTGTGGGCTTTGAAAAG
63 CACTGACTTGTGGGCTTTG-AAAG
* * * * *
150099 AGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGCATGTCACTAACTTATGTGTGCTTTGAAAG-G
1 -GGTGCCACTGAC-T-TGTGGGCTTTGAAA-GG-ATGCCACTAAC-T-TGTGGGCTTTAAAAGAG
*
150163 GTGCCACTGACTTGTGGGCTTTTG-AAG
59 TTGCCACTGACTTGTGGGC-TTTGAAAG
* * * * * *
150190 AGATGCCACTGACCTGTGGGTTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAAAG-GGTGC
1 -GGTGCCACTGACTTGTGGGCTTTGAAA-GG-ATGCCACTAACTTGTGGGCTTTAAAAGAGTTGC
* *
150254 CACTAACTTGTGGGCTTTGAAAA
63 CACTGACTTGTGGGCTTTGAAAG
* * * * *
150277 GATGCCACTAACCTGTGGGCTTGGAAAAGATG
1 GGTGCCACTGACTTGTGGGCTTTGAAAGGATG
150309 AACGTTTTAG
Statistics
Matches: 621, Mismatches: 85, Indels: 75
0.80 0.11 0.10
Matches are distributed among these distances:
84 25 0.04
85 21 0.03
86 44 0.07
87 141 0.23
88 16 0.03
89 208 0.33
90 38 0.06
91 56 0.09
92 40 0.06
93 32 0.05
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (85 bp):
GGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTAAAAGAGTTGCCAC
TGACTTGTGGGCTTTGAAAG
Found at i:150000 original size:208 final size:201
Alignment explanation
Indices: 149514--150306 Score: 828
Period size: 208 Copynumber: 3.8 Consensus size: 201
149504 TGAAGGATAC
* * * * * * * *
149514 GCCACTGACTTGCGGGCCTTGAAAGGGTGTCACTGACTTGTGGGCTTTGAA-AGAATGCTACTAA
1 GCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAGAG-ATGCCACTGA
* * * **
149578 CTTGTGGGCTTTGAAATGG-TGCCACTGACTTGTGGGCTTTAAAAGAGTTGCCACCGACTTGTGT
65 CTTGTGGGCTTTGAAAGGGTTGCCACTGACTTGTGGGCTTTGAAAG-GGTGCCACTAAC-T-TGT
* * ** * * * *
149642 GGGCTTTGAAAGGGTGCCACCGACTTGTGGGCTTTGAAATG-GTATGCCACTGCCTTGT-GAGCT
127 GGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAAGAGT-TGCCACCGACTTGTGGGGCT
149705 TTGAAA-GGAT
191 TTGAAAGGGAT
* * * *
149715 GACACTAACTTATGGTCTTTTG-AAGAGATGCCACTAACTTGTGGGCTTTGAAAGGAGTTGCCA-
1 GCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACTAACTTGTGGGCTTTG-AA-GAGATGCCAC
* * *
149778 TCGACTTGTGTGGGCTTTGAAAGGGTATGCCACTAACTTATGTGGGCTTTGAAAGGGTGTCACTG
62 T-GAC-T-TGTGGGCTTTGAAAGGGT-TGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACTA
* * *
149843 ACTTTTGGGCTTTTGAAAAGATGCCAGTAACTTGTGGGCTTTAAAAAGAGTTGCCACCGACTTGT
121 ACTTGTGGGC-TTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTTGT
*
149908 GCGGGCTTTAAAAGGGTAT
185 G-GGGCTTTGAAAGGG-AT
* * * *
149927 GCCACTGACTTGTGGGCTTTGAAAGGATGCCATTAACTTGTGGTCTTTTGAAGAGATGTCACTGA
1 GCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAGAGATGCCACTGA
* * *
149992 CTTGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGAAAGGATGCCACTAACTTGT
65 CTTGTGGGCTTTG-AAAGGGTTGCCACTGAC-T-TGTGGGCTTTGAAAGGGTGCCACTAACTTGT
*
150057 AGGCTTTTGAAGAA-ATGCCACTAACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGG
127 GGGC-TTTGAA-AAGATGCCACTAACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTG-GGG
150121 CTTTGAAAGGGCAT
189 CTTTGAAAGGG-AT
* * * *
150135 GTCACTAACTTATGTGTGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGAGATGCCACT
1 GCCACTAAC-T-TGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAGAGATGCCACT
* *
150200 GACCTGTGGGTTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGT
63 GACTTGTGGGCTTTGAAAGGGT-TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGT
* *
150265 GGGCTTTGAAAAGATGCCACTAACCTGTGGGCTTGGAAAAGA
127 GGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAAGA
150307 TGAACGTTTT
Statistics
Matches: 497, Mismatches: 68, Indels: 48
0.81 0.11 0.08
Matches are distributed among these distances:
201 15 0.03
202 24 0.05
203 3 0.01
204 6 0.01
205 3 0.01
206 18 0.04
207 39 0.08
208 209 0.42
209 29 0.06
210 102 0.21
211 27 0.05
212 22 0.04
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (201 bp):
GCCACTAACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAGAGATGCCACTGAC
TTGTGGGCTTTGAAAGGGTTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGC
TTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGGGGCTTTGAA
AGGGAT
Found at i:150052 original size:329 final size:322
Alignment explanation
Indices: 149482--150308 Score: 970
Period size: 329 Copynumber: 2.5 Consensus size: 322
149472 TTAAAAAAGG
* * * * * * *
149482 TGCCACTAACTTATGTGAGCTTTG-AAGGATACGCCACTGACTTGCGGGC-CTTGAAAGGGTGTC
1 TGCCACTAACTTATGTGGGCTTTGAAAGGGT--GCCACTGACTTGTGGGCTTTTGAAAAGATGCC
* * * * ** * *
149545 ACTGACTTGTGGGCTTT-GAAAGA--ATGCTACTAACTTGTGGGCTTTGAAATGGTGCCACTGAC
64 ACTAACCTGTGGG-TTTAAAAAGAGTATGCCACCGACTTGTGGGCTTTAAAAGGGTGCCACTGAC
* * ** *
149607 TTGTGGGCTTTAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGTGCCACCGACTTGTGG
128 TTGTGGGCTTTGAAAG-GATGCCACTAAC-T-TGTGGGCTTTGAAAGGATGCCACCGACTTGTGG
* *
149672 GCTTTGAAATGGTATGCCACTGCCTTGTGAGCTTTGAAAGGATGACACTAACTTAT-GGTCTTTT
190 GCTTTGAAAAGGTATGCCACCGCCTTGTGAGCTTTGAAAGGATGACACTAACTTATAGG-CTTTT
* * *
149736 GAAGAGATGCCACTAACTTGTGGGCTTTGAAAGGAGTTGCCATCGACTTGTGTGGGCTTTGAAAG
254 GAAGAAATGCCACTAACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGAAAG
*
149801 GGTA
319 GGCA
* * *
149805 TGCCACTAACTTATGTGGGCTTTGAAAGGGTGTCACTGACTTTTGGGCTTTTGAAAAGATGCCAG
1 TGCCACTAACTTATGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCAC
*
149870 TAACTTGTGGGCTTTAAAAAGAGT-TGCCACCGACTTGTGCGGGCTTTAAAAGGGTATGCCACTG
66 TAACCTGTGGG-TTTAAAAAGAGTATGCCACCGACTTGT--GGGCTTTAAAAGGG--TGCCACTG
* * * *
149934 ACTTGTGGGCTTTGAAAGGATGCCATTAACTTGTGGTCTTTTG-AAGAGATGTCACTGACTTGTG
126 ACTTGTGGGCTTTGAAAGGATGCCACTAACTTGTGGGC-TTTGAAAG-GATGCCACCGACTTGTG
* * * *
149998 GGCTTTGAAAAGAGT-TGCCACCGACTTGTGTGGGCTTTGAAAGGATGCCACTAACTTGTAGGCT
189 GGCTTTGAAAAG-GTATGCCACCG-CCT-TGTGAGCTTTGAAAGGATGACACTAACTTATAGGCT
150062 TTTGAAGAAATGCCACTAACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGA
251 TTTGAAGAAATGCCACTAACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGA
150127 AAGGGCA
316 AAGGGCA
* * *
150134 TGTCACTAACTTATGTGTGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGAGATGCCAC
1 TGCCACTAACTTATGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCAC
* ** * * * *
150199 TGACCTGTGGGTTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTG
66 TAACCTGTGGGTTTAAAAAGAGTATGCCACCGACTTGTGGGCTTTAAAAGGGTGCCACTGACTTG
* * * *
150264 TGGGCTTTGAAAAGATGCCACTAACCTGTGGGCTTGGAAAAGATG
131 TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATG
150309 AACGTTTTAG
Statistics
Matches: 431, Mismatches: 56, Indels: 33
0.83 0.11 0.06
Matches are distributed among these distances:
322 14 0.03
323 48 0.11
324 17 0.04
325 54 0.13
326 9 0.02
327 62 0.14
328 21 0.05
329 204 0.47
330 2 0.00
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.30
Consensus pattern (322 bp):
TGCCACTAACTTATGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTTGAAAAGATGCCAC
TAACCTGTGGGTTTAAAAAGAGTATGCCACCGACTTGTGGGCTTTAAAAGGGTGCCACTGACTTG
TGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAGGATGCCACCGACTTGTGGGCTTTG
AAAAGGTATGCCACCGCCTTGTGAGCTTTGAAAGGATGACACTAACTTATAGGCTTTTGAAGAAA
TGCCACTAACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTTGTGTGGGCTTTGAAAGGGCA
Found at i:150304 original size:28 final size:28
Alignment explanation
Indices: 149514--150308 Score: 610
Period size: 28 Copynumber: 27.0 Consensus size: 28
149504 TGAAGGATAC
* * * *
149514 GCCACTGACTTGCGGGCCTTGAAAGGGT
1 GCCACTGACTTGTGGGCTTTGAAAAGAT
*
149542 GTCACTGACTTGTGGGCTTTG-AAAGAAT
1 GCCACTGACTTGTGGGCTTTGAAAAG-AT
* * * *
149570 GCTACTAACTTGTGGGCTTTGAAATGGT
1 GCCACTGACTTGTGGGCTTTGAAAAGAT
149598 GCCACTGACTTGTGGGCTTT-AAAAGAGTT
1 GCCACTGACTTGTGGGCTTTGAAAAGA--T
* * *
149627 GCCACCGACTTGTGTGGGCTTTGAAAGGGT
1 GCCACTGAC-T-TGTGGGCTTTGAAAAGAT
* *
149657 GCCACCGACTTGTGGGCTTTGAAATGGTAT
1 GCCACTGACTTGTGGGCTTTGAAA-AG-AT
* * *
149687 GCCACTGCCTTGTGAGCTTTGAAAGGAT
1 GCCACTGACTTGTGGGCTTTGAAAAGAT
* * * * *
149715 GACACTAACTTATGGTCTTTTGAAGAGAT
1 GCCACTGACTTGTGGGC-TTTGAAAAGAT
* *
149744 GCCACTAACTTGTGGGCTTTGAAAGGAGTT
1 GCCACTGACTTGTGGGCTTTGAAA--AGAT
*
149774 GCCA-TCGACTTGTGTGGGCTTTGAAAGGGTAT
1 GCCACT-GAC-T-TGTGGGCTTTGAAA-AG-AT
* * *
149806 GCCACTAACTTATGTGGGCTTTGAAAGGGT
1 GCCACTGAC-T-TGTGGGCTTTGAAAAGAT
* *
149836 GTCACTGACTTTTGGGCTTTTGAAAAGAT
1 GCCACTGACTTGTGGGC-TTTGAAAAGAT
* * *
149865 GCCAGTAACTTGTGGGCTTTAAAAAGAGTT
1 GCCACTGACTTGTGGGCTTTGAAAAGA--T
*
149895 GCCACCGACTTGTGCGGGCTTT-AAAAGGGTAT
1 GCCACTGACTTGT--GGGCTTTGAAAA--G-AT
*
149927 GCCACTGACTTGTGGGCTTTGAAAGGAT
1 GCCACTGACTTGTGGGCTTTGAAAAGAT
* * * *
149955 GCCATTAACTTGTGGTCTTTTGAAGAGAT
1 GCCACTGACTTGTGGGC-TTTGAAAAGAT
*
149984 GTCACTGACTTGTGGGCTTTGAAAAGAGTT
1 GCCACTGACTTGTGGGCTTTGAAAAGA--T
* *
150014 GCCACCGACTTGTGTGGGCTTTGAAAGGAT
1 GCCACTGAC-T-TGTGGGCTTTGAAAAGAT
* *
150044 GCCACTAACTTGTAGGCTTTTGAAGAA-AT
1 GCCACTGACTTGTGGGC-TTTGAA-AAGAT
*
150073 GCCACTAACTTGTGGGCTTTGAAAAGAGTT
1 GCCACTGACTTGTGGGCTTTGAAAAGA--T
* *
150103 GCCACCGACTTGTGTGGGCTTTGAAAGGGCAT
1 GCCACTGAC-T-TGTGGGCTTTGAAA-AG-AT
* * * * *
150135 GTCACTAACTTATGTGTGCTTTGAAAGGGT
1 GCCACTGAC-T-TGTGGGCTTTGAAAAGAT
*
150165 GCCACTGACTTGTGGGCTTTTGAAGAGAT
1 GCCACTGACTTGTGGGC-TTTGAAAAGAT
* * *
150194 GCCACTGACCTGTGGGTTTTGAAAGGGTAT
1 GCCACTGACTTGTGGGCTTTGAAA-AG-AT
* *
150224 GCCACTGACTTGTGGGCTTTGAAAGGGT
1 GCCACTGACTTGTGGGCTTTGAAAAGAT
*
150252 GCCACTAACTTGTGGGCTTTGAAAAGAT
1 GCCACTGACTTGTGGGCTTTGAAAAGAT
* * *
150280 GCCACTAACCTGTGGGCTTGGAAAAGAT
1 GCCACTGACTTGTGGGCTTTGAAAAGAT
150308 G
1 G
150309 AACGTTTTAG
Statistics
Matches: 624, Mismatches: 100, Indels: 86
0.77 0.12 0.11
Matches are distributed among these distances:
27 9 0.01
28 207 0.33
29 139 0.22
30 125 0.20
31 26 0.04
32 113 0.18
33 3 0.00
34 2 0.00
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
GCCACTGACTTGTGGGCTTTGAAAAGAT
Found at i:151175 original size:21 final size:20
Alignment explanation
Indices: 151134--151176 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
151124 CTCCTGATGC
*
151134 ATATTTCAATTAATTATCAA
1 ATATTTCAATTAATGATCAA
151154 ATATTATCAATTTAATGA-CAA
1 ATATT-TCAA-TTAATGATCAA
151175 AT
1 AT
151177 GCACTATGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 9 0.45
22 6 0.30
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (20 bp):
ATATTTCAATTAATGATCAA
Found at i:151579 original size:27 final size:24
Alignment explanation
Indices: 151549--151653 Score: 95
Period size: 27 Copynumber: 4.0 Consensus size: 24
151539 TTTGGACACC
151549 TTTTTTTTTTGTTTGCTTGTTTGTTTG
1 TTTTTTTTTT-TTT-CTTGTTT-TTTG
*
151576 TTTTTTTGGTTTTTTTTTGTTTTTTG
1 TTTTTTT--TTTTTTCTTGTTTTTTG
151602 TTTTTTTTGTTTTTTCTTGGTTTTTTTG
1 -TTTTTTT-TTTTTTCTT-G-TTTTTTG
151630 TTTTTTTGGTTTTTT-TTGTTTTTT
1 TTTTTTT--TTTTTTCTTGTTTTTT
151654 TGTACGAAGG
Statistics
Matches: 70, Mismatches: 2, Indels: 14
0.81 0.02 0.16
Matches are distributed among these distances:
25 6 0.09
26 14 0.20
27 30 0.43
28 17 0.24
29 3 0.04
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (24 bp):
TTTTTTTTTTTTTCTTGTTTTTTG
Found at i:151583 original size:8 final size:8
Alignment explanation
Indices: 151552--151656 Score: 102
Period size: 8 Copynumber: 12.1 Consensus size: 8
151542 GGACACCTTT
151552 TTTTTTTG
1 TTTTTTTG
**
151560 TTTGCTTG
1 TTTTTTTG
*
151568 TTTGTTTG
1 TTTTTTTG
151576 TTTTTTTGG
1 TTTTTTT-G
*
151585 TTTTTTTT
1 TTTTTTTG
151593 TGTTTTTTG
1 T-TTTTTTG
151602 TTTTTTTTG
1 -TTTTTTTG
151611 TTTTTTCTTGG
1 -TTTTT-TT-G
151622 TTTTTTTG
1 TTTTTTTG
151630 TTTTTTTGG
1 TTTTTTT-G
151639 TTTTTTTTG
1 -TTTTTTTG
151648 TTTTTTTG
1 TTTTTTTG
151656 T
1 T
151657 ACGAAGGACG
Statistics
Matches: 84, Mismatches: 6, Indels: 14
0.81 0.06 0.13
Matches are distributed among these distances:
8 37 0.44
9 31 0.37
10 15 0.18
11 1 0.01
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.82
Consensus pattern (8 bp):
TTTTTTTG
Found at i:151589 original size:1 final size:1
Alignment explanation
Indices: 151585--151654 Score: 50
Period size: 1 Copynumber: 70.0 Consensus size: 1
151575 GTTTTTTTGG
* * * * ** * ** *
151585 TTTTTTTTTGTTTTTTGTTTTTTTTGTTTTTTCTTGGTTTTTTTGTTTTTTTGGTTTTTTTTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
151650 TTTTT
1 TTTTT
151655 GTACGAAGGA
Statistics
Matches: 53, Mismatches: 16, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:0.00, C:0.01, G:0.13, T:0.86
Consensus pattern (1 bp):
T
Found at i:151589 original size:9 final size:9
Alignment explanation
Indices: 151575--151655 Score: 94
Period size: 9 Copynumber: 9.0 Consensus size: 9
151565 TTGTTTGTTT
151575 GTTTTTTTG
1 GTTTTTTTG
151584 GTTTTTTT-
1 GTTTTTTTG
*
151592 TTGTTTTTTG
1 GT-TTTTTTG
*
151602 TTTTTTTTG
1 GTTTTTTTG
*
151611 TTTTTTCTTG
1 GTTTTT-TTG
151621 GTTTTTTT-
1 GTTTTTTTG
151629 GTTTTTTTG
1 GTTTTTTTG
*
151638 GTTTTTTTT
1 GTTTTTTTG
151647 GTTTTTTTG
1 GTTTTTTTG
151656 TACGAAGGAC
Statistics
Matches: 64, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
8 9 0.14
9 45 0.70
10 10 0.16
ACGTcount: A:0.00, C:0.01, G:0.16, T:0.83
Consensus pattern (9 bp):
GTTTTTTTG
Found at i:151596 original size:35 final size:35
Alignment explanation
Indices: 151549--151655 Score: 112
Period size: 35 Copynumber: 3.0 Consensus size: 35
151539 TTTGGACACC
151549 TTTTTTTTTTGTTTGCTTGTTTGTTTGTTTTTTTGG
1 TTTTTTTTTTGTTTGCTTGTTT-TTTGTTTTTTTGG
*
151585 -TTTTTTTTTGTTT-TTTGTTTTTTTTGTTTTTTCTTGG
1 TTTTTTTTTTGTTTGCTTG--TTTTTTG-TTTTT-TTGG
* *
151622 TTTTTTTGTTTTTTTGGTT-TTTTTTGTTTTTTTG
1 TTTTTTT-TTTGTTTGCTTGTTTTTTGTTTTTTTG
151656 TACGAAGGAC
Statistics
Matches: 61, Mismatches: 3, Indels: 15
0.77 0.04 0.19
Matches are distributed among these distances:
34 3 0.05
35 20 0.33
36 13 0.21
37 11 0.18
38 6 0.10
39 6 0.10
40 2 0.03
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.82
Consensus pattern (35 bp):
TTTTTTTTTTGTTTGCTTGTTTTTTGTTTTTTTGG
Found at i:151654 original size:27 final size:27
Alignment explanation
Indices: 151554--151654 Score: 123
Period size: 28 Copynumber: 3.6 Consensus size: 27
151544 ACACCTTTTT
151554 TTTTTGTTTGCTTGTTTGTTTGTTTTTTTGG
1 TTTTT-TTTG-TT-TTT-TTTGTTTTTTTGG
* *
151585 TTTTTTTT-TGTTTTTTGTTTTTTTTG
1 TTTTTTTTGTTTTTTTTGTTTTTTTGG
*
151611 TTTTTTCTTGGTTTTTTTGTTTTTTTGG
1 TTTTTT-TTGTTTTTTTTGTTTTTTTGG
151639 TTTTTTTTGTTTTTTT
1 TTTTTTTTGTTTTTTT
151655 GTACGAAGGA
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
26 18 0.29
27 14 0.23
28 22 0.35
30 3 0.05
31 5 0.08
ACGTcount: A:0.00, C:0.02, G:0.16, T:0.82
Consensus pattern (27 bp):
TTTTTTTTGTTTTTTTTGTTTTTTTGG
Found at i:156867 original size:20 final size:20
Alignment explanation
Indices: 156842--156900 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
156832 GAAAAAAGAT
156842 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
* **
156862 AGAATGTATCAATACATTTT
1 AGAATGTATCGATACATTGA
*
156882 ATACATGTATCGATACATT
1 AGA-ATGTATCGATACATT
156901 AAAAAATGCA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
20 19 0.58
21 14 0.42
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.36
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:163043 original size:33 final size:33
Alignment explanation
Indices: 163006--163071 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
162996 AGTAGCTTAA
163006 ATTGTATCGAAACAAAAAAATATGTATCGATAC
1 ATTGTATCGAAACAAAAAAATATGTATCGATAC
* * ***
163039 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGAAACAAAAAAATATGTATCGATAC
163072 TGTAGACACT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGAAACAAAAAAATATGTATCGATAC
Found at i:163046 original size:13 final size:13
Alignment explanation
Indices: 163028--163052 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
163018 CAAAAAAATA
163028 TGTATCGATACAT
1 TGTATCGATACAT
163041 TGTATCGATACA
1 TGTATCGATACA
163053 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:163359 original size:33 final size:33
Alignment explanation
Indices: 163322--163388 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
163312 TTCAACGATT
163322 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
163355 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
163388 T
1 T
163389 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:163360 original size:13 final size:13
Alignment explanation
Indices: 163342--163366 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
163332 CATAAAATGT
163342 TGTATCGATACAA
1 TGTATCGATACAA
163355 TGTATCGATACA
1 TGTATCGATACA
163367 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:163449 original size:13 final size:13
Alignment explanation
Indices: 163431--163455 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
163421 ATTACTCACA
163431 TGTATCGATACAT
1 TGTATCGATACAT
163444 TGTATCGATACA
1 TGTATCGATACA
163456 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:163592 original size:52 final size:52
Alignment explanation
Indices: 163464--163584 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
163454 CACTGATCTT
*
163464 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
163516 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
163568 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
163585 ATAAATTTTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:170846 original size:11 final size:12
Alignment explanation
Indices: 170818--170848 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
170808 ACCTACTCTT
170818 CAAAAAAAAAAA
1 CAAAAAAAAAAA
170830 CAAAAAAAAAAA
1 CAAAAAAAAAAA
*
170842 GAAAAAA
1 CAAAAAA
170849 CCCCTTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.90, C:0.06, G:0.03, T:0.00
Consensus pattern (12 bp):
CAAAAAAAAAAA
Found at i:171851 original size:31 final size:31
Alignment explanation
Indices: 171815--171929 Score: 171
Period size: 31 Copynumber: 3.7 Consensus size: 31
171805 AAAGTCAAAA
171815 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
171846 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
171877 AAAGTCCACGACGCAGTGGC-ATC-CTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
171906 TTTAAAGTCCACGACTCAGTGGCA
1 ---AAAGTCCACGACTCAGTGGCA
171930 TTTTTTCTTC
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
29 5 0.07
30 3 0.04
31 49 0.64
32 19 0.25
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.23
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:172055 original size:35 final size:35
Alignment explanation
Indices: 171901--172658 Score: 786
Period size: 34 Copynumber: 22.0 Consensus size: 35
171891 AGTGGCATCC
* * * *
171901 TTCTCTTTAAAGTCCACGACTCAGTGGCA-T-TTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
* * *
171934 TTC--TTCAAAGCCCACAACTTCGTGGCA--CATT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
* *
171965 TTC-CTTCAAAGCCCACAACTCCGTGGCAC-CTTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
* *
171998 TTCTTTTCTTCAAAGCCCACAACTCTGTGGCACACTTT
1 TTC-TTT-TT-AAAGCCCACAACTCCGTGGCACTCTTT
*
172036 TTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
*
172071 TTCCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTT
1 TT--CTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
*
172107 TTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
*
172142 TTCCCTTTTCAAAGCCCACAACTCCGTGGCAC-CTTT
1 TT--CTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
172178 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
*
172213 TTCCCTTTTTAAAGCCCACAACTCCATGGCAC-CTTT
1 TT--CTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
172249 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
172284 TTCCCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT
1 TT--CTTTTTAAAGCCCACAACTCCGTGGCACTC-T-TT
* * *
172322 TTCCTTCT-AAGCCCACAACTCCGTGGCACCCTTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
* *
172356 TTCCTTTTAAAGCCCACGACTCCGTGGCA--C---
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
*
172386 -TC--TTTAAAGCCCACAACTCCGTGGCAC-CTTC
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
172417 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
* * *
172452 TTCCCTTTT-AAGTCCACGACTCCGTGGCACTC-TT
1 TT-CTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
* *
172486 TTC-CTTTAAAGCCCACAACTACGTGGCACTC-TT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
* *
172519 TTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
* *
172553 TTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTTTTTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTC----TTT
* * * * *
172591 TTCCTTTTTAAAGTCCAAAACTCTGTGGTAC-CTTG
1 TT-CTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
* *
172626 TTCTTTTTAAA-TCCACAACTTCGTGGCA-TCTTT
1 TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
172659 CACCCTCTCT
Statistics
Matches: 634, Mismatches: 49, Indels: 84
0.83 0.06 0.11
Matches are distributed among these distances:
27 23 0.04
28 1 0.00
29 2 0.00
31 24 0.04
32 28 0.04
33 74 0.12
34 162 0.26
35 118 0.19
36 32 0.05
37 132 0.21
38 16 0.03
39 5 0.01
40 17 0.03
ACGTcount: A:0.20, C:0.33, G:0.12, T:0.35
Consensus pattern (35 bp):
TTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
Found at i:172133 original size:71 final size:71
Alignment explanation
Indices: 171937--172592 Score: 826
Period size: 71 Copynumber: 9.5 Consensus size: 71
171927 GCATTTTTTC
* * * *
171937 TTCAAAGCCCACAACTTCGTGGCA-CATTTTC-CTTCAAAGCCCACAACTCCGTGGCAC-CTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
**
171999 TCTTTT
66 TCCCTT
* *
172005 CTTCAAAGCCCACAACTCTGTGGCACACTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTT
1 -TTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTT
172070 TTTCCCTT
64 TTTCCCTT
*
172078 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
172143 TCCCTT
66 TCCCTT
172149 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
172214 TCCCTT
66 TCCCTT
* *
172220 TTTAAAGCCCACAACTCCATGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
172285 TCCCTT
66 TCCCTT
* * * *
172291 TTTAAAGCCCACAACTCCGTGGCACCTTCTTTTCCTTCT-AAGCCCACAACTCCGTGGCACCCTT
1 TTCAAAGCCCACAACTCCGTGGCACC-T-TTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTT
172355 TTT-CCTT
64 TTTCCCTT
* *
172362 TT-AAAGCCCACGACTCCGTGGCA-C----TC--TTTAAAGCCCACAACTCCGTGGCAC-CTTCT
1 TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
172418 T--CTT
66 TCCCTT
* * * *
172422 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAGTCCACGACTCCGTGGCACTC-T
1 TTCAAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTTAAAGCCCACAACTCCGTGGCACTCTT
172485 TTT-CC-T
64 TTTCCCTT
* * *
172491 TT-AAAGCCCACAACTACGTGGCA-CTCTTTTCCTTCT-AAGCCCACAACTCCGTGGCACTCTTT
1 TTCAAAGCCCACAACTCCGTGGCACCT-TTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTT
172553 TT-CC--
65 TTCCCTT
*
172557 TTCTAAGCCCACAACTCCGTGGCACTCTTTTT-TTTT
1 TTCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTT
172593 CCTTTTTAAA
Statistics
Matches: 532, Mismatches: 31, Indels: 50
0.87 0.05 0.08
Matches are distributed among these distances:
60 5 0.01
61 27 0.05
62 21 0.04
63 3 0.01
66 30 0.06
67 32 0.06
68 25 0.05
69 50 0.09
70 25 0.05
71 222 0.42
72 75 0.14
73 17 0.03
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.34
Consensus pattern (71 bp):
TTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
TCCCTT
Found at i:172399 original size:27 final size:27
Alignment explanation
Indices: 172361--172451 Score: 110
Period size: 27 Copynumber: 3.1 Consensus size: 27
172351 CCTTTTTCCT
*
172361 TTTAAAGCCCACGACTCCGTGGCACTC
1 TTTAAAGCCCACAACTCCGTGGCACTC
172388 TTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1 TTTAAAGCCCACAACTCCGTGGCA----C-TC
172420 TTTTTAAAGCCCACAACTCCGTGGCACTC
1 --TTTAAAGCCCACAACTCCGTGGCACTC
172449 TTT
1 TTT
172452 TTCCCTTTTA
Statistics
Matches: 56, Mismatches: 1, Indels: 14
0.79 0.01 0.20
Matches are distributed among these distances:
27 26 0.46
29 2 0.04
30 1 0.02
31 1 0.02
32 2 0.04
34 24 0.43
ACGTcount: A:0.22, C:0.35, G:0.14, T:0.29
Consensus pattern (27 bp):
TTTAAAGCCCACAACTCCGTGGCACTC
Found at i:172763 original size:49 final size:49
Alignment explanation
Indices: 172699--173920 Score: 1146
Period size: 49 Copynumber: 24.8 Consensus size: 49
172689 GCAACCCTTC
* * *
172699 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* *
172748 TAAGTCCAATGTAGCTGGCCGTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
172791 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA--TCTT-CATCTT
* * *
172843 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
172892 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
172935 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
172984 TAAGTCCAATGTAGTTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
173033 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA--TCTT-CATCTT
* * *
173085 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAT-C----T-TCATCTT
* * * * * * * *
173140 TAAGCCCAATATCGTTGGCCATGAATCAACATATTGGCATCTTTATCACTTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATC--T-TCA-TCTT
* * ** * ** * ** *
173193 CTCATCA-TCC-TTTTAAGTCCAATATCGCTGGCCT-TG-A-ATCAGCATATTGGCATCTTCATC
1 -T-A--AGTCCAATGT-AG--C--TGGC-CTTGAATCAGCACATTGGCATCTT--CA---T---C
173253 TT
48 TT
* * *
173255 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
*
173304 TAAGTCCAATGTAGCTGGCCTTAAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
173347 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* *
173396 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * * *
173445 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTAGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA--TCTT-CATCTT
* *
173497 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
173546 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* *
173595 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
173644 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* *
173693 GAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
173736 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
173785 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
* * *
173828 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG--CATCTT-CATCTT
* * *
173880 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACGTTGACATC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATC
173921 CTTTTTCTCA
Statistics
Matches: 960, Mismatches: 142, Indels: 141
0.77 0.11 0.11
Matches are distributed among these distances:
43 189 0.20
45 5 0.01
47 3 0.00
49 491 0.51
50 10 0.01
51 4 0.00
52 161 0.17
53 3 0.00
54 7 0.01
55 45 0.05
56 6 0.01
57 11 0.01
58 7 0.01
59 7 0.01
60 5 0.01
61 4 0.00
62 2 0.00
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
Done.