genome.fa.s568.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold568
Parameters: 2 7 7 80 10 50 1000
Length:  84996

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5880--5943	27	2.3	29	78	10	71	37	4	4	53	1.43
9236--9278	20	2.2	20	84	12	54	39	0	2	58	1.11
19492--19566	20	3.8	20	74	0	69	38	12	14	34	1.83
20073--21258	229	5.2	225	86	5	1581	21	17	32	28	1.96
20085--21260	28	40.9	29	87	5	1538	21	18	32	28	1.96
22488--22548	1	61.0	1	76	0	59	0	3	8	88	0.61
22472--22514	10	4.3	10	84	0	50	4	9	4	81	0.97
22499--22549	9	6.0	9	82	13	72	0	0	11	88	0.52
22478--22548	24	3.0	24	87	4	92	1	4	8	85	0.77
29089--29289	52	3.9	52	93	1	323	29	16	18	34	1.94
29278--29302	13	1.9	13	100	0	50	36	16	16	32	1.90
29343--29409	33	2.0	33	88	0	98	40	14	11	32	1.83
29365--29389	13	1.9	13	100	0	50	32	16	16	36	1.90
37894--38013	52	2.3	52	95	0	213	29	16	18	35	1.93
37885--38033	52	2.9	51	86	4	201	31	15	17	35	1.91
38022--38046	13	1.9	13	100	0	50	36	16	16	32	1.90
38085--38154	33	2.1	33	89	0	104	40	14	11	34	1.82
38110--38134	13	1.9	13	100	0	50	32	16	16	36	1.90
38968--40192	98	11.8	112	79	13	541	34	16	24	24	1.95
39017--39174	49	3.1	49	76	7	147	35	15	24	24	1.94
38953--39513	170	3.3	170	96	2	999	36	14	24	24	1.93
39187--39344	49	3.1	49	77	7	156	35	15	24	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39361--40192	49	16.8	49	86	3	1084	32	17	25	25	1.97
39353--40194	248	3.4	248	88	4	1211	32	16	25	25	1.96
40192--40289	33	3.0	33	92	7	164	17	18	36	27	1.93
40185--40293	32	3.4	32	87	9	161	17	17	37	27	1.92
40295--40656	34	10.7	33	80	11	360	34	12	32	20	1.90
40295--40661	33	10.9	34	81	12	386	34	12	32	20	1.90
40295--40663	70	5.4	69	84	9	456	34	12	32	20	1.90
40511--40627	61	1.9	61	84	10	159	24	15	36	23	1.93
40545--40596	27	1.9	27	96	0	95	21	17	38	23	1.93
41644--41675	11	2.9	11	100	0	64	0	0	6	93	0.34
41729--41765	20	1.9	18	89	10	56	0	10	5	83	0.79
42011--42045	1	35.0	1	94	0	61	0	0	2	97	0.19
42014--42057	20	2.2	20	87	0	61	2	2	6	88	0.67
42011--42057	21	2.2	21	88	3	67	2	2	6	89	0.63
48965--49084	52	2.3	52	95	0	213	29	16	18	35	1.93
48956--49104	52	2.9	51	86	4	201	31	15	17	35	1.91
49093--49117	13	1.9	13	100	0	50	36	16	16	32	1.90
49157--49226	33	2.1	33	89	0	104	40	14	11	34	1.82
49182--49206	13	1.9	13	100	0	50	32	16	16	36	1.90
54947--55021	20	3.8	20	80	3	80	40	12	13	34	1.81
54944--55021	40	2.0	39	87	2	111	39	12	12	34	1.82
56908--57032	62	2.0	62	93	0	214	33	23	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66024--66121	22	4.2	22	67	18	54	47	2	2	47	1.25
66846--66886	21	2.0	20	85	4	55	51	2	4	41	1.36
67074--67128	15	3.7	15	80	0	65	43	1	0	54	1.10
68759--68806	23	2.1	23	92	0	78	29	0	4	66	1.10
69027--69072	23	2.0	23	91	0	74	17	17	17	47	1.83
73689--73794	8	13.0	8	69	23	62	59	0	0	40	0.97
73653--73705	16	3.4	15	78	5	52	69	1	1	26	1.09
73656--73726	36	1.9	38	83	16	96	69	1	1	28	1.06
73719--73804	16	5.2	15	73	23	59	54	0	0	45	0.99
73700--73804	33	3.1	34	75	17	112	58	0	0	41	0.98
73711--73779	20	3.5	20	81	18	76	53	0	0	46	1.00
73711--73820	18	6.1	19	75	18	69	52	0	0	46	1.06
74151--74205	22	2.5	22	77	13	60	38	5	1	54	1.34
74278--74333	28	2.0	28	85	0	76	39	7	0	53	1.28
75953--76007	14	3.9	14	78	0	56	30	29	9	30	1.88

Tables:   1

The End!