Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold57
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4071704
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.34
Warning! 82236 characters in sequence are not A, C, G, or T
File 12 of 27
Found at i:1536024 original size:26 final size:25
Alignment explanation
Indices: 1535960--1536033 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 25
1535950 TTTACATTAT
1535960 TATTTAATAGTAAAAATTTATAATTTAA
1 TATTTAATA-TAAAAA--TATAATTTAA
*
1535988 -ATTTAATTATAAAAATATATTTTAA
1 TATTTAA-TATAAAAATATAATTTAA
*
1536013 TATTTATATATAATAATATAA
1 TATTTA-ATATAAAAATATAA
1536034 ACTCTCAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
25 9 0.22
26 16 0.40
27 13 0.32
28 2 0.05
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (25 bp):
TATTTAATATAAAAATATAATTTAA
Found at i:1537894 original size:2 final size:2
Alignment explanation
Indices: 1537889--1537921 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1537879 AAAAAAAGAT
1537889 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1537922 ACTTGCTGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:1547536 original size:254 final size:253
Alignment explanation
Indices: 1547087--1547584 Score: 978
Period size: 254 Copynumber: 2.0 Consensus size: 253
1547077 AGCCATATTA
1547087 GTAAAATTGCACTTGCTACAGCTGCTTGGGTCAAATCAGTTCATGTACAAGTACAGACATGCACT
1 GTAAAATTGCACTTGCTACAGCTGCTTGGGTCAAATCAGTTCATGTACAAGTACAGACATGCACT
*
1547152 TTTACTTTAATCATATACATTTATACATACATAAGTATACATATTTATGTCCATTGAAAGATTAA
66 TTTACTTTAACCATATACATTTATACATACATAAGTATACATATTTATGTCCATTGAAAGATTAA
1547217 ACTCATCAATATTGTTGCTCAAAAAACATAAATCCATTATCTTTACAAGGGGAAGAAAAAAGGAA
131 ACTCATCAATATTGTTGCTCAAAAAACATAAATCCATTATCTTTACAAGGGGAAGAAAAAAGGAA
1547282 AGAAGTAAAGAAGGATAAAACCAGGACATGCATTGTGTGGAACAACAAATTTTCCCCTT
196 AGAAGTAAAGAAGGATAAAACCAGGACATGCATTGTGT-GAACAACAAATTTTCCCCTT
1547341 GTAAAATTGCACTTGCTACAGCTGCTTGGGTCAAATCAGTTCATGTACAAGTACAGACATGCACT
1 GTAAAATTGCACTTGCTACAGCTGCTTGGGTCAAATCAGTTCATGTACAAGTACAGACATGCACT
1547406 TTTACTTTAACCATATACATTTATACATACATAAGTATACATATTTATGTCCATTGAAAGATTAA
66 TTTACTTTAACCATATACATTTATACATACATAAGTATACATATTTATGTCCATTGAAAGATTAA
1547471 ACTCATCAATATTGTTGCTCAAAAAACATAAATCCATTATCTTTACAAGGGGAAGAAAAAAGGAA
131 ACTCATCAATATTGTTGCTCAAAAAACATAAATCCATTATCTTTACAAGGGGAAGAAAAAAGGAA
1547536 AGAAGTAAAGAAGGATAAAACCAGGACATGCATTGTGTGAACAACAAAT
196 AGAAGTAAAGAAGGATAAAACCAGGACATGCATTGTGTGAACAACAAAT
1547585 ATTTTAGCAG
Statistics
Matches: 243, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
253 11 0.05
254 232 0.95
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (253 bp):
GTAAAATTGCACTTGCTACAGCTGCTTGGGTCAAATCAGTTCATGTACAAGTACAGACATGCACT
TTTACTTTAACCATATACATTTATACATACATAAGTATACATATTTATGTCCATTGAAAGATTAA
ACTCATCAATATTGTTGCTCAAAAAACATAAATCCATTATCTTTACAAGGGGAAGAAAAAAGGAA
AGAAGTAAAGAAGGATAAAACCAGGACATGCATTGTGTGAACAACAAATTTTCCCCTT
Found at i:1549946 original size:31 final size:36
Alignment explanation
Indices: 1549911--1549982 Score: 84
Period size: 35 Copynumber: 2.2 Consensus size: 36
1549901 TTATTCATTC
*
1549911 ATATTAATT-TTTAA-A-TATAA-TTT-TTTAATTT
1 ATATTAATTATTTAATACTAAAATTTTATTTAATTT
1549942 ATATT-ATTATTTAATACTAAAATTTTATTTAATTT
1 ATATTAATTATTTAATACTAAAATTTTATTTAATTT
*
1549977 AAATTA
1 ATATTA
1549983 TAAAAATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
30 3 0.09
31 10 0.30
32 1 0.03
33 4 0.12
34 3 0.09
35 12 0.36
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (36 bp):
ATATTAATTATTTAATACTAAAATTTTATTTAATTT
Found at i:1551435 original size:15 final size:15
Alignment explanation
Indices: 1551417--1551462 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
1551407 AAAAAATCAA
1551417 AATTTATATAAATAT
1 AATTTATATAAATAT
* *
1551432 AATTTTTTTAAATAT
1 AATTTATATAAATAT
1551447 -ATTTAATATAAATAT
1 AATTT-ATATAAATAT
1551462 A
1 A
1551463 TAAATATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
14 4 0.16
15 21 0.84
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AATTTATATAAATAT
Found at i:1551648 original size:23 final size:22
Alignment explanation
Indices: 1551622--1551686 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 22
1551612 TATATTATAT
1551622 TATTAAAATTATTTTTATTTAAA
1 TATTAAAA-TATTTTTATTTAAA
* * *
1551645 TATTTATATATTTTATAATT-AA
1 TATTAAAATATTTT-TATTTAAA
*
1551667 -ATTAAAATATATTTATTTAA
1 TATTAAAATATTTTTATTTAA
1551687 TAATAGTAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
20 4 0.12
21 11 0.33
22 8 0.24
23 10 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TATTAAAATATTTTTATTTAAA
Found at i:1552146 original size:17 final size:17
Alignment explanation
Indices: 1552124--1552168 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
1552114 TTTAATTTTT
1552124 AACATTAAAAATTATAA
1 AACATTAAAAATTATAA
**
1552141 AACATT-AATTTTATAA
1 AACATTAAAAATTATAA
1552157 AA-ATTAAAAATT
1 AACATTAAAAATT
1552169 TTTAATATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
15 3 0.13
16 14 0.61
17 6 0.26
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (17 bp):
AACATTAAAAATTATAA
Found at i:1553020 original size:19 final size:20
Alignment explanation
Indices: 1552979--1553020 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
1552969 ATGAATATAT
* *
1552979 TTAATAATTTTTTATAAAAA
1 TTAAAAATTTATTATAAAAA
*
1552999 TTAAAAATTTATT-TAAATA
1 TTAAAAATTTATTATAAAAA
1553018 TTA
1 TTA
1553021 TTATCTCAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAAAAATTTATTATAAAAA
Found at i:1554008 original size:27 final size:25
Alignment explanation
Indices: 1553961--1554010 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 25
1553951 TTTTAATAAA
*
1553961 TTTAATATTTAATTTTTAAAATTAT
1 TTTAATAATTAATTTTTAAAATTAT
1553986 TTTATATAATTAATATTTTAAAATT
1 TTTA-ATAATTAAT-TTTTAAAATT
1554011 TTAAATAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.18
26 8 0.36
27 10 0.45
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
TTTAATAATTAATTTTTAAAATTAT
Found at i:1554011 original size:24 final size:23
Alignment explanation
Indices: 1553950--1554019 Score: 61
Period size: 24 Copynumber: 2.8 Consensus size: 23
1553940 TAAAAAACAA
* *
1553950 ATTTTAATAAATTTAATATTTAAT
1 ATTTTAA-AATTTTAATAATTAAT
1553974 -TTTTAAAATTATTTTATATAATTAAT
1 ATTTT-AAA--ATTTTA-ATAATTAAT
1554000 ATTTTAAAATTTTAAATAAT
1 ATTTTAAAATTTT-AATAAT
1554020 ATGAAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
23 5 0.13
24 12 0.32
25 6 0.16
26 11 0.29
27 4 0.11
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
ATTTTAAAATTTTAATAATTAAT
Found at i:1555456 original size:19 final size:18
Alignment explanation
Indices: 1555423--1555468 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
1555413 TTTGGTCTAA
*
1555423 TTTA-ATTATAAATTAATT
1 TTTATATTAAAAATT-ATT
1555441 TATTAT-TTAAAAATTATT
1 T-TTATATTAAAAATTATT
1555459 TTTATATTAA
1 TTTATATTAA
1555469 TATTTTTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
17 4 0.17
18 9 0.38
19 11 0.46
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTATATTAAAAATTATT
Found at i:1556019 original size:21 final size:19
Alignment explanation
Indices: 1555969--1556022 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 19
1555959 TTAGATTTAG
1555969 TAATTCATATTTTATTATTA
1 TAATT-ATATTTTATTATTA
*
1555989 TATTTATATATTTTATTATTTCA
1 TA-AT-TATATTTTATTA-TT-A
1556012 TAATTATATTT
1 TAATTATATTT
1556023 AACGTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 2 0.07
21 19 0.68
22 4 0.14
23 3 0.11
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (19 bp):
TAATTATATTTTATTATTA
Found at i:1556036 original size:45 final size:49
Alignment explanation
Indices: 1555981--1556071 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 49
1555971 ATTCATATTT
* *
1555981 TATTATTATATTTATAT-ATTTTATTAT-TTCATAA-TTATATTTAACG
1 TATTATTATATTTATATAATTTTAATATATTAATAATTTATATTTAACG
1556027 TATT-TTATATTTATATAAATTTTAATATATTAATAATTTATATTT
1 TATTATTATATTTATAT-AATTTTAATATATTAATAATTTATATTT
1556072 TATAAATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
45 12 0.31
46 4 0.10
47 9 0.23
48 6 0.15
49 8 0.21
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.59
Consensus pattern (49 bp):
TATTATTATATTTATATAATTTTAATATATTAATAATTTATATTTAACG
Found at i:1556037 original size:29 final size:28
Alignment explanation
Indices: 1555975--1556038 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 28
1555965 TTAGTAATTC
* *
1555975 ATATTTTATTATTATATTTATATATTTT
1 ATATTTCATAATTATATTTATATATTTT
1556003 ATTATTTCATAATTATATTTA-ACGTATTTT
1 A-TATTTCATAATTATATTTATA--TATTTT
1556033 ATATTT
1 ATATTT
1556039 ATATAAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 2 0.06
29 22 0.71
30 7 0.23
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (28 bp):
ATATTTCATAATTATATTTATATATTTT
Found at i:1556079 original size:15 final size:15
Alignment explanation
Indices: 1556030--1556080 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
1556020 TTTAACGTAT
1556030 TTTATATTTATATAAA
1 TTTATATTT-TATAAA
*
1556046 TTTTAATATATTA-ATAA
1 -TTT-ATATTTTATA-AA
1556063 TTTATATTTTATAAA
1 TTTATATTTTATAAA
1556078 TTT
1 TTT
1556081 TAAAATATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 12 0.41
16 5 0.17
17 7 0.24
18 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TTTATATTTTATAAA
Found at i:1556841 original size:22 final size:22
Alignment explanation
Indices: 1556813--1556854 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
1556803 AAATAAAAAT
1556813 TATTTTTAT-ATTAATATTTATA
1 TATTTTTATAATTAA-ATTTATA
1556835 TATTTTTATAATTAAATTTA
1 TATTTTTATAATTAAATTTA
1556855 AATAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TATTTTTATAATTAAATTTATA
Found at i:1556896 original size:23 final size:21
Alignment explanation
Indices: 1556870--1556920 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
1556860 AAATAAAAAT
*
1556870 AATTATTATTGAATAATAATTTA
1 AATTATTACT-AA-AATAATTTA
*
1556893 AATTA-AACTAAAATAATTTA
1 AATTATTACTAAAATAATTTA
1556913 AATTATTA
1 AATTATTA
1556921 AAAATTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 14 0.58
21 3 0.12
22 2 0.08
23 5 0.21
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
AATTATTACTAAAATAATTTA
Found at i:1558059 original size:21 final size:22
Alignment explanation
Indices: 1558026--1558074 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
1558016 GATATATATA
*
1558026 TTTTTTCTCCTTTT-TTTTTAAT
1 TTTTTTATCCTTTTCTTTTT-AT
*
1558048 TTTTTTAT-CTTTTCTTTTTTT
1 TTTTTTATCCTTTTCTTTTTAT
1558069 TTTTTT
1 TTTTTT
1558075 CATTTCATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (22 bp):
TTTTTTATCCTTTTCTTTTTAT
Found at i:1558480 original size:49 final size:50
Alignment explanation
Indices: 1558427--1558523 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 50
1558417 AAAAAATTAA
* * *
1558427 ATTTTAATTTATTT-TTA-ATATTTTTTTAAAAATTATTTTATATAATGAT
1 ATTTTAATTT-TTTATTATAAATTTTATTAAAAATTATATTATATAATGAT
*
1558476 ATTTTAATTTTTTACTTATAAATTTTATTAAAAATTATATTATTTAAT
1 ATTTTAATTTTTTA-TTATAAATTTTATTAAAAATTATATTATATAAT
1558524 TAAATATTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
48 3 0.07
49 10 0.24
50 3 0.07
51 25 0.61
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (50 bp):
ATTTTAATTTTTTATTATAAATTTTATTAAAAATTATATTATATAATGAT
Found at i:1558525 original size:20 final size:19
Alignment explanation
Indices: 1558499--1558548 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
1558489 ACTTATAAAT
1558499 TTTATTAAAAATTATATT-A
1 TTTATTAAAAATT-TATTAA
*
1558518 TTTAATTAAATATTTATTAA
1 TTT-ATTAAAAATTTATTAA
1558538 TTT-TTAAAAAT
1 TTTATTAAAAAT
1558549 ATTTTAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 7 0.26
19 7 0.26
20 13 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TTTATTAAAAATTTATTAA
Found at i:1558570 original size:35 final size:35
Alignment explanation
Indices: 1558474--1558578 Score: 88
Period size: 35 Copynumber: 2.9 Consensus size: 35
1558464 TTATATAATG
* *
1558474 ATATTTTAAT-TTT-TTACTTATAAATTTTATTAAAA
1 ATATTTTAATATTTAATACTTATTAA-TTT-TTAAAA
* * * *
1558509 ATTATATTATTTAATTAAATATTTATTAATTTTTAAAA
1 A-TATTTTA-AT-ATTTAATACTTATTAATTTTTAAAA
*
1558547 ATATTTTAATATTTAATACTTATTAATATTTA
1 ATATTTTAATATTTAATACTTATTAATTTTTA
1558579 TTTTTTAAAA
Statistics
Matches: 54, Mismatches: 11, Indels: 10
0.72 0.15 0.13
Matches are distributed among these distances:
35 20 0.37
36 7 0.13
37 7 0.13
38 7 0.13
39 5 0.09
40 8 0.15
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (35 bp):
ATATTTTAATATTTAATACTTATTAATTTTTAAAA
Found at i:1563588 original size:46 final size:46
Alignment explanation
Indices: 1563511--1563600 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
1563501 GCATGAAATT
*
1563511 TTCTGTGTATTTGACAATAACATAATCTCCTCACCATGTTATTACA
1 TTCTATGTATTTGACAATAACATAATCTCCTCACCATGTTATTACA
* *
1563557 TTCTATGTATTTGACAAT-ACTATAATTTCCTCACCATTTTATTA
1 TTCTATGTATTTGACAATAAC-ATAATCTCCTCACCATGTTATTA
1563601 AACACCCCCC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
45 2 0.05
46 38 0.95
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (46 bp):
TTCTATGTATTTGACAATAACATAATCTCCTCACCATGTTATTACA
Found at i:1564994 original size:21 final size:22
Alignment explanation
Indices: 1564962--1565005 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
1564952 AATTTTTATT
1564962 TAAAATTAATTAT-AAAATATA
1 TAAAATTAATTATAAAAATATA
1564983 TAAATATT-ATTATAAAAATATA
1 TAAA-ATTAATTATAAAAATATA
1565005 T
1 T
1565006 TTTTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
TAAAATTAATTATAAAAATATA
Found at i:1565817 original size:16 final size:16
Alignment explanation
Indices: 1565796--1565826 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1565786 CGTATCAAAT
*
1565796 AAAATAATATAACAAG
1 AAAATAATAAAACAAG
1565812 AAAATAATAAAACAA
1 AAAATAATAAAACAA
1565827 ATTCACTTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.16
Consensus pattern (16 bp):
AAAATAATAAAACAAG
Found at i:1566392 original size:10 final size:10
Alignment explanation
Indices: 1566373--1566411 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
1566363 TACGTTAATA
1566373 ATATATATTT
1 ATATATATTT
*
1566383 ATATAAATTT
1 ATATATATTT
1566393 -TAATATATTT
1 AT-ATATATTT
1566403 ATATATATT
1 ATATATATT
1566412 CAAATCATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 1 0.04
10 23 0.92
11 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
ATATATATTT
Found at i:1566980 original size:14 final size:14
Alignment explanation
Indices: 1566961--1566990 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
1566951 TTATCTATAA
1566961 ATTTATTAATATTT
1 ATTTATTAATATTT
*
1566975 ATTTATTATTATTT
1 ATTTATTAATATTT
1566989 AT
1 AT
1566991 GAACATTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTTATTAATATTT
Found at i:1569955 original size:21 final size:20
Alignment explanation
Indices: 1569924--1569963 Score: 55
Period size: 19 Copynumber: 1.9 Consensus size: 20
1569914 TTATTTAAAT
1569924 TTAATTATAAATAATATATATA
1 TTAATTAT-AA-AATATATATA
1569946 TTAA-TATAAAATATATAT
1 TTAATTATAAAATATATAT
1569964 TTTTTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 3 0.17
22 4 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAATTATAAAATATATATA
Found at i:1569970 original size:21 final size:22
Alignment explanation
Indices: 1569923--1569972 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
1569913 TTTATTTAAA
1569923 TTTAATTATAAATAATATATAT
1 TTTAATTATAAATAATATATAT
* *
1569945 ATTAA-TATAAA-ATATATATTT
1 TTTAATTATAAATA-ATATATAT
1569966 TTTAATT
1 TTTAATT
1569973 TGTTATTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 1 0.04
21 17 0.74
22 5 0.22
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TTTAATTATAAATAATATATAT
Found at i:1572242 original size:14 final size:15
Alignment explanation
Indices: 1572205--1572247 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
1572195 TTTTAAATAA
*
1572205 TAAAATTTAATAAATT
1 TAAAATTT-ATAATTT
1572221 TAAAATTT-TAATTT
1 TAAAATTTATAATTT
*
1572235 TAATATTTATAAT
1 TAAAATTTATAAT
1572248 ATTTTTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 12 0.50
15 4 0.17
16 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TAAAATTTATAATTT
Found at i:1573246 original size:13 final size:13
Alignment explanation
Indices: 1573228--1573255 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1573218 ATGTTGAACA
1573228 AATATTTATATTT
1 AATATTTATATTT
1573241 AATATTTATATTT
1 AATATTTATATTT
1573254 AA
1 AA
1573256 ATCCGAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
AATATTTATATTT
Found at i:1573970 original size:19 final size:21
Alignment explanation
Indices: 1573943--1573992 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 21
1573933 ATATCGACAC
* *
1573943 ATTAAATTTTTATTA-A-TTA
1 ATTATATTTTAATTATATTTA
1573962 ATTATATTTTAATTATATTTA
1 ATTATATTTTAATTATATTTA
*
1573983 AATATATTTT
1 ATTATATTTT
1573993 GTATATTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 13 0.50
20 1 0.04
21 12 0.46
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTATATTTTAATTATATTTA
Found at i:1573973 original size:11 final size:11
Alignment explanation
Indices: 1573959--1573992 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
1573949 TTTTTATTAA
1573959 TTAATTATATT
1 TTAATTATATT
1573970 TTAATTATA-T
1 TTAATTATATT
*
1573980 TTAAATATATT
1 TTAATTATATT
1573991 TT
1 TT
1573993 GTATATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTAATTATATT
Found at i:1575907 original size:2 final size:2
Alignment explanation
Indices: 1575900--1575924 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1575890 GTTCAAATTT
1575900 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
1575925 TTGTTGCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:1578668 original size:22 final size:21
Alignment explanation
Indices: 1578643--1578685 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
1578633 ATCGATTTAA
1578643 ATGATTAAAATTAATAAAAAAT
1 ATGATT-AAATTAATAAAAAAT
*
1578665 ATGATTGAATTAATAAAAAAT
1 ATGATTAAATTAATAAAAAAT
1578686 TAATTATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (21 bp):
ATGATTAAATTAATAAAAAAT
Found at i:1578845 original size:21 final size:20
Alignment explanation
Indices: 1578790--1578847 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 20
1578780 TCTTAATTAT
* *
1578790 TAAATAATTTATTTAATATA
1 TAAATAAATAATTTAATATA
* *
1578810 -AAATTTAATATTTTAATATA
1 TAAA-TAAATAATTTAATATA
1578830 TAAATAAAGTAATTTAAT
1 TAAATAAA-TAATTTAAT
1578848 CTATTAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
19 3 0.10
20 15 0.52
21 11 0.38
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
TAAATAAATAATTTAATATA
Found at i:1581205 original size:18 final size:19
Alignment explanation
Indices: 1581182--1581229 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
1581172 GTTTAATTAA
1581182 ATTTTTATTTA-TGATAAT
1 ATTTTTATTTATTGATAAT
*
1581200 ATTTTTATATTATTTATAAT
1 ATTTTTAT-TTATTGATAAT
1581220 ATTTTT-TTTA
1 ATTTTTATTTA
1581230 CGAAAGTGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 11 0.41
19 4 0.15
20 12 0.44
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
ATTTTTATTTATTGATAAT
Found at i:1581227 original size:23 final size:23
Alignment explanation
Indices: 1581186--1581229 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
1581176 AATTAAATTT
*
1581186 TTATTTATGATAATATTTTTATA
1 TTATTTATAATAATATTTTTATA
* *
1581209 TTATTTATAATATTTTTTTTA
1 TTATTTATAATAATATTTTTA
1581230 CGAAAGTGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (23 bp):
TTATTTATAATAATATTTTTATA
Found at i:1582590 original size:17 final size:16
Alignment explanation
Indices: 1582538--1582642 Score: 54
Period size: 18 Copynumber: 6.1 Consensus size: 16
1582528 ACACATACTT
1582538 TAAAATT-TATATAATA
1 TAAAATTATATA-AATA
1582554 T-AAATTAT-TAAGATA
1 TAAAATTATATAA-ATA
1582569 TTAAAATCTATATAAATA
1 -TAAAAT-TATATAAATA
*
1582587 TAAAATATTTTATAAATA
1 T-AAA-ATTATATAAATA
** *
1582605 TTATAATACGATAAAAATA
1 -TA-AA-ATTATATAAATA
*
1582624 TAAATATGATATAAATA
1 TAAA-ATTATATAAATA
1582641 TA
1 TA
1582643 CGAGTTACAA
Statistics
Matches: 72, Mismatches: 7, Indels: 19
0.73 0.07 0.19
Matches are distributed among these distances:
14 1 0.01
15 10 0.14
16 3 0.04
17 20 0.28
18 21 0.29
19 17 0.24
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (16 bp):
TAAAATTATATAAATA
Found at i:1582622 original size:19 final size:18
Alignment explanation
Indices: 1582600--1582641 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
1582590 AATATTTTAT
1582600 AAATATTATAATACGATAA
1 AAATATTA-AATACGATAA
* *
1582619 AAATA-TAAATATGATAT
1 AAATATTAAATACGATAA
1582636 AAATAT
1 AAATAT
1582642 ACGAGTTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 13 0.65
18 2 0.10
19 5 0.25
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (18 bp):
AAATATTAAATACGATAA
Found at i:1582672 original size:254 final size:251
Alignment explanation
Indices: 1582221--1582729 Score: 652
Period size: 254 Copynumber: 2.0 Consensus size: 251
1582211 AAAATAATTA
* * ** * * * *
1582221 TATAAATATGATATGAATAAAGTATTAAATATATGATATGAGATGACAAAAAAATATACTTTAAA
1 TATAAATATAATACGAATAAAGTATTAAATATACAACATAAAATGACAAAAAAACATACTTT-AA
1582286 AAATATATATAATATAAATTATTAAAGTATTAAAATCTATATAAATATAAAATATTTTATATAAT
65 AAATATATATAATATAAATTATTAAAGTATTAAAATCTATATAAATATAAAATATTTTATATAAT
* * * *
1582351 ATTATAATATAATAAAATATATGAACGTGATAAATATATGAATTACGAAATTTGGTTGATAGCTT
130 ATTATAATACAATAAAATATATAAACATGATAAATATACGAATTACGAAATTTGGTTGATAGCTT
* * * * *
1582416 TCTCGTCTTAAAGAGCTTGTTGTATATTTTTGACTTGCATGATTATTATGTTTAAAGTTTT
195 TCTCATCTT--A-A-CTTGCTGTATATTTTTGACTTGCATAATTATTATATTTAAAGCTTT
* * *
1582477 TATAAATATAATACGAATAAAGTATTAAATATACAACATAAAATGATAAAGACACATACTTT-AA
1 TATAAATATAATACGAATAAAGTATTAAATATACAACATAAAATGACAAAAAAACATACTTTAAA
*
1582541 AATTTATATAATATAAATTATT-AAGATATTAAAATCTATATAAATATAAAATATTTTATA-AAT
66 AATATATATAATATAAATTATTAAAG-TATTAAAATCTATATAAATATAAAATATTTTATATAAT
* * *
1582604 ATTATAATACGATAAAA-ATATAAATATGATATAAATATACGAGTTAC-AAGATTTGGTCT-ATA
130 ATTATAATACAATAAAATATATAAACATG--ATAAATATACGAATTACGAA-ATTTGGT-TGATA
* *
1582666 GCTTTCTCATCTTAATTTGCTGTATTTTTTTGACTTGCATAATTATTATATTTAAAGCTTT
191 GCTTTCTCATCTTAACTTGCTGTATATTTTTGACTTGCATAATTATTATATTTAAAGCTTT
1582727 TAT
1 TAT
1582730 CTAGTAAAAT
Statistics
Matches: 222, Mismatches: 26, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
250 43 0.19
251 1 0.00
252 9 0.04
253 23 0.10
254 94 0.42
255 1 0.00
256 51 0.23
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.40
Consensus pattern (251 bp):
TATAAATATAATACGAATAAAGTATTAAATATACAACATAAAATGACAAAAAAACATACTTTAAA
AATATATATAATATAAATTATTAAAGTATTAAAATCTATATAAATATAAAATATTTTATATAATA
TTATAATACAATAAAATATATAAACATGATAAATATACGAATTACGAAATTTGGTTGATAGCTTT
CTCATCTTAACTTGCTGTATATTTTTGACTTGCATAATTATTATATTTAAAGCTTT
Found at i:1583086 original size:30 final size:30
Alignment explanation
Indices: 1583043--1583115 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
1583033 CACATAAGGA
* * * * *
1583043 AATATAGTCTTATGTTCATACGTGTCTTCT
1 AATATATTTTTATGATCATACGTATCTTAT
* *
1583073 AATATATTTTTATGATCATAGGTATTTTAT
1 AATATATTTTTATGATCATACGTATCTTAT
1583103 AATATATTTTTAT
1 AATATATTTTTAT
1583116 TTATCGTAAT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.30, C:0.08, G:0.10, T:0.52
Consensus pattern (30 bp):
AATATATTTTTATGATCATACGTATCTTAT
Found at i:1583732 original size:29 final size:27
Alignment explanation
Indices: 1583647--1583733 Score: 93
Period size: 28 Copynumber: 3.1 Consensus size: 27
1583637 TCATTTAGTC
* *
1583647 ATTAAATCTTTAATAATTAAGTGATAAA
1 ATTAAAT-TTTTATAATTAAATGATAAA
* * *
1583675 AATAAATTTTTATAATATAAATTAAAAA
1 ATTAAATTTTTATAAT-TAAATGATAAA
1583703 ATTAATATTTTTATAATTAAATGATCAAA
1 ATTAA-ATTTTTATAATTAAATGAT-AAA
1583732 AT
1 AT
1583734 AAAAAAATTT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
27 8 0.17
28 24 0.50
29 16 0.33
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.41
Consensus pattern (27 bp):
ATTAAATTTTTATAATTAAATGATAAA
Found at i:1584094 original size:19 final size:19
Alignment explanation
Indices: 1584070--1584107 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
1584060 AACAAACAAT
*
1584070 CAAACCCTAAATAAATAAA
1 CAAACCCGAAATAAATAAA
1584089 CAAACCCGAAATAAATAAA
1 CAAACCCGAAATAAATAAA
1584108 AAAAACCAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.63, C:0.21, G:0.03, T:0.13
Consensus pattern (19 bp):
CAAACCCGAAATAAATAAA
Found at i:1587866 original size:17 final size:16
Alignment explanation
Indices: 1587844--1587884 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
1587834 TTACACTTTC
1587844 TTTTATTATTATTAATA
1 TTTTATTATTATTAA-A
*
1587861 TTTTATTATTTTTAAA
1 TTTTATTATTATTAAA
1587877 TTTATATT
1 TTT-TATT
1587885 TGATACCATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTATTATTATTAAA
Found at i:1588497 original size:2 final size:2
Alignment explanation
Indices: 1588490--1588521 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
1588480 GTGTTAATTC
1588490 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1588522 TAATTAAAGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1589356 original size:4 final size:4
Alignment explanation
Indices: 1589347--1589376 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
1589337 ATCTAAAAAT
*
1589347 ATAA ATAA ATAA ATGA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT
1589377 GTTTTTTGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:1589366 original size:16 final size:16
Alignment explanation
Indices: 1589347--1589377 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
1589337 ATCTAAAAAT
1589347 ATAAATAAATAAATGA
1 ATAAATAAATAAATGA
1589363 ATAAATAAATAAATG
1 ATAAATAAATAAATG
1589378 TTTTTTGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (16 bp):
ATAAATAAATAAATGA
Found at i:1590282 original size:3 final size:3
Alignment explanation
Indices: 1590274--1590327 Score: 92
Period size: 3 Copynumber: 18.3 Consensus size: 3
1590264 CATTAAAAGA
*
1590274 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1590322 AA- AAT A
1 AAT AAT A
1590328 CACTATTGCT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 46 0.96
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:1591349 original size:2 final size:2
Alignment explanation
Indices: 1591342--1591366 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1591332 GCATATACAA
1591342 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
1591367 CCCACTAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1592425 original size:15 final size:15
Alignment explanation
Indices: 1592402--1592478 Score: 82
Period size: 15 Copynumber: 4.9 Consensus size: 15
1592392 CATTTTGATA
*
1592402 ATTTTAAATTCAATT
1 ATTTTAAATTAAATT
* *
1592417 ATATTAAATTTAATT
1 ATTTTAAATTAAATT
1592432 ATTTTCAAATTTAAATT
1 ATTTT-AAA-TTAAATT
**
1592449 ATTTTAAATTAAAAA
1 ATTTTAAATTAAATT
1592464 ATTTTAAATTTAAAT
1 ATTTTAAA-TTAAAT
1592479 ACGTTACAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
15 30 0.58
16 11 0.21
17 11 0.21
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.51
Consensus pattern (15 bp):
ATTTTAAATTAAATT
Found at i:1592476 original size:31 final size:31
Alignment explanation
Indices: 1592401--1592478 Score: 95
Period size: 32 Copynumber: 2.5 Consensus size: 31
1592391 CCATTTTGAT
* * *
1592401 AATTTTAAA-TTCAATTATATTAAATTTAAT
1 AATTTTAAATTTAAATTATATTAAATTAAAA
* *
1592431 TATTTTCAAATTTAAATTATTTTAAATTAAAA
1 AATTTT-AAATTTAAATTATATTAAATTAAAA
1592463 AATTTTAAATTTAAAT
1 AATTTTAAATTTAAAT
1592479 ACGTTACAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
30 5 0.12
31 13 0.32
32 22 0.55
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (31 bp):
AATTTTAAATTTAAATTATATTAAATTAAAA
Found at i:1594796 original size:2 final size:2
Alignment explanation
Indices: 1594789--1594816 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1594779 GCTTCAAGTA
1594789 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1594817 TTTATTATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1594837 original size:31 final size:31
Alignment explanation
Indices: 1594802--1594862 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
1594792 TATATATATA
*
1594802 TATATATATATATATTTTATTATAGAGGGCT
1 TATATATATATATATTGTATTATAGAGGGCT
* *
1594833 TATATATGTATATGTTGTATTATAGAGGGC
1 TATATATATATATATTGTATTATAGAGGGC
1594863 ATACCTTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.33, C:0.03, G:0.18, T:0.46
Consensus pattern (31 bp):
TATATATATATATATTGTATTATAGAGGGCT
Found at i:1595393 original size:2 final size:2
Alignment explanation
Indices: 1595386--1595415 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1595376 AAGAATAGTA
1595386 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1595416 GCAAACATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1597010 original size:6 final size:6
Alignment explanation
Indices: 1597001--1597067 Score: 63
Period size: 6 Copynumber: 11.8 Consensus size: 6
1596991 TAATAATTTA
* *
1597001 TATATT TATA-T TATATT TATATAT TTTA-T TATA-T TATAAT TATATT
1 TATATT TATATT TATATT TATAT-T TATATT TATATT TATATT TATATT
*
1597047 TA-AAT TAT-TT TATATT TATAT
1 TATATT TATATT TATATT TATAT
1597068 AAATTTTATT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
5 22 0.43
6 25 0.49
7 4 0.08
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (6 bp):
TATATT
Found at i:1597014 original size:5 final size:5
Alignment explanation
Indices: 1596998--1597099 Score: 65
Period size: 5 Copynumber: 21.2 Consensus size: 5
1596988 ATATAATAAT
*
1596998 TTATA -TAT- TTATA TTATA TT-TA -TATA TTTTA TTATA TTATAA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTAT-A TTATA
* * * * * *
1597045 TTTAAA TTATT TTATA TT-TA TATAAA TTTTA TTAAA TTA-A TAAT- TTATA
1 -TTATA TTATA TTATA TTATA T-TATA TTATA TTATA TTATA TTATA TTATA
1597094 TTATA T
1 TTATA T
1597100 AAGTTTTTAG
Statistics
Matches: 74, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
3 1 0.01
4 19 0.26
5 43 0.58
6 11 0.15
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:1597026 original size:27 final size:26
Alignment explanation
Indices: 1596996--1597067 Score: 90
Period size: 29 Copynumber: 2.6 Consensus size: 26
1596986 AAATATAATA
1596996 ATTTATATATTTATATTATATTTATAT
1 ATTT-TATATTTATATTATATTTATAT
*
1597023 ATTTTATTATATTATAATTATATTTAAATT
1 ATTTTA-TAT-TTAT-ATTATATTTATA-T
1597053 ATTTTATATTTATAT
1 ATTTTATATTTATAT
1597068 AAATTTTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
26 2 0.05
27 9 0.22
28 8 0.20
29 14 0.35
30 7 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (26 bp):
ATTTTATATTTATATTATATTTATAT
Found at i:1597061 original size:45 final size:48
Alignment explanation
Indices: 1596985--1597095 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 48
1596975 TATAATAAAA
*
1596985 TAAATATAATAATTTATA--T-ATTTATATTATATTTATAT-ATTTTAT
1 TAAAT-TAATAATTTATATTTAAATTATATTATATTTATATAATTTTAT
* *
1597030 TATATT-ATAA-TTATATTTAAATTATTTTATATTTATATAAATTTTAT
1 TAAATTAATAATTTATATTTAAATTATATTATATTTATAT-AATTTTAT
1597077 TAAATTAATAATTTATATT
1 TAAATTAATAATTTATATT
1597096 ATATAAGTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
42 5 0.09
43 4 0.07
44 2 0.04
45 21 0.38
47 12 0.22
48 4 0.07
49 7 0.13
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (48 bp):
TAAATTAATAATTTATATTTAAATTATATTATATTTATATAATTTTAT
Found at i:1599985 original size:13 final size:13
Alignment explanation
Indices: 1599967--1599991 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1599957 TATTTTTAAT
1599967 ATAAAATAAAATA
1 ATAAAATAAAATA
1599980 ATAAAATAAAAT
1 ATAAAATAAAAT
1599992 TGATCCAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
ATAAAATAAAATA
Found at i:1600256 original size:29 final size:31
Alignment explanation
Indices: 1600178--1600256 Score: 74
Period size: 32 Copynumber: 2.5 Consensus size: 31
1600168 TTTTATATTT
**
1600178 TATAAATTTAATTATTTTTAATTATTATAAAA
1 TATAAATAAAATTATTTTTAATTA-TATAAAA
1600210 TATAAATAAATATTTTATTTTTAAATTA-ATAAAA
1 TATAAATAAA-A--TTATTTTT-AATTATATAAAA
1600244 -AT-AATAAAATTAT
1 TATAAATAAAATTAT
1600257 AAAAATATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
29 4 0.10
31 1 0.02
32 14 0.34
33 3 0.07
34 6 0.15
35 8 0.20
36 5 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (31 bp):
TATAAATAAAATTATTTTTAATTATATAAAA
Found at i:1604145 original size:3 final size:3
Alignment explanation
Indices: 1604139--1604184 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
1604129 CTAGTAGTAG
*
1604139 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1604185 TCAGTTAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:1615426 original size:23 final size:21
Alignment explanation
Indices: 1615400--1615453 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 21
1615390 TTTTATGAAT
*
1615400 ATTTAATAATTAAAAATATTTAA
1 ATTTAATAA-T-AAAATATATAA
*
1615423 ATTTAATTATAAAATATATAA
1 ATTTAATAATAAAATATATAA
1615444 ATATTAATAA
1 AT-TTAATAA
1615454 AATTATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 12 0.44
22 7 0.26
23 8 0.30
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
ATTTAATAATAAAATATATAA
Found at i:1615438 original size:21 final size:21
Alignment explanation
Indices: 1615406--1615455 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
1615396 GAATATTTAA
*
1615406 TAATTAAAAATATTTAAAT-T
1 TAATTAAAAATATATAAATAT
1615426 TAATTATAAAATATATAAATAT
1 TAATTA-AAAATATATAAATAT
1615448 TAA-TAAAA
1 TAATTAAAA
1615456 TTATTTTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 9 0.33
21 14 0.52
22 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TAATTAAAAATATATAAATAT
Found at i:1615691 original size:20 final size:19
Alignment explanation
Indices: 1615666--1615722 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
1615656 GTTTTTATAA
*
1615666 AAAAAAAAATCTGAAAAATG
1 AAAAAAAAATCTGAAAAA-C
*
1615686 AAAAAAAAAT-AGAAAAAC
1 AAAAAAAAATCTGAAAAAC
1615704 AAAATAAAAATCTTGAAAA
1 AAAA-AAAAATC-TGAAAA
1615723 GAAGTTCAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 4 0.13
19 12 0.39
20 10 0.32
21 5 0.16
ACGTcount: A:0.74, C:0.05, G:0.07, T:0.14
Consensus pattern (19 bp):
AAAAAAAAATCTGAAAAAC
Found at i:1616021 original size:19 final size:19
Alignment explanation
Indices: 1615997--1616046 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
1615987 TCACGTTTTT
1615997 AAATAT-ATTATAAAATATA
1 AAATATAATTAT-AAATATA
* *
1616016 AAATATAAGTATAAATATG
1 AAATATAATTATAAATATA
1616035 AAATATAATTAT
1 AAATATAATTAT
1616047 GATTGATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 23 0.85
20 4 0.15
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (19 bp):
AAATATAATTATAAATATA
Found at i:1616378 original size:15 final size:16
Alignment explanation
Indices: 1616355--1616387 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
1616345 GATATAGTGG
*
1616355 AAAATAATATAAATTT
1 AAAATAATAAAAATTT
1616371 AAAA-AATAAAAATTT
1 AAAATAATAAAAATTT
1616386 AA
1 AA
1616388 TTGATACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAATAATAAAAATTT
Found at i:1616871 original size:19 final size:21
Alignment explanation
Indices: 1616847--1616894 Score: 55
Period size: 19 Copynumber: 2.3 Consensus size: 21
1616837 TTTATTATAT
1616847 TATTAAAATATA-AT-TTTTA
1 TATTAAAATATATATATTTTA
* *
1616866 TATTAATATTTATATATTTTA
1 TATTAAAATATATATATTTTA
1616887 TAATTAAA
1 T-ATTAAA
1616895 TTTATGTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 10 0.43
20 2 0.09
21 6 0.26
22 5 0.22
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TATTAAAATATATATATTTTA
Found at i:1621055 original size:2 final size:2
Alignment explanation
Indices: 1621044--1621077 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
1621034 CTATATCACT
1621044 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1621078 TGAAGCATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1621693 original size:4 final size:4
Alignment explanation
Indices: 1621686--1621726 Score: 68
Period size: 4 Copynumber: 10.8 Consensus size: 4
1621676 TTCATATATA
1621686 TATG TATG TATG TATG TATG TATG TA-- TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1621727 TTAAAAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.06
4 33 0.94
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:1623379 original size:18 final size:19
Alignment explanation
Indices: 1623344--1623379 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
1623334 AAATTAAATA
1623344 TAATTTAAATGAACTTGAT
1 TAATTTAAATGAACTTGAT
*
1623363 TAATTTAATTG-ACTTGA
1 TAATTTAAATGAACTTGA
1623380 AAATCTTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (19 bp):
TAATTTAAATGAACTTGAT
Found at i:1623562 original size:2 final size:2
Alignment explanation
Indices: 1623557--1623587 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1623547 TTCTGGAGTT
1623557 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1623588 TGAATAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1624014 original size:22 final size:21
Alignment explanation
Indices: 1623975--1624020 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
1623965 AATTAATTTA
* *
1623975 ATTTTATAAATTTTTATAATT
1 ATTTTACAAATTTATATAATT
*
1623996 ATTTTACATAATTTATATAGTT
1 ATTTTACA-AATTTATATAATT
1624018 ATT
1 ATT
1624021 CAATTCAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
ATTTTACAAATTTATATAATT
Found at i:1624323 original size:2 final size:2
Alignment explanation
Indices: 1624316--1624357 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
1624306 TTTATTTCTC
1624316 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1624358 GAGACTACTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1625028 original size:2 final size:2
Alignment explanation
Indices: 1625017--1625047 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
1625007 AGAAAATTCA
1625017 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1625048 GCACATTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:1627139 original size:2 final size:2
Alignment explanation
Indices: 1627134--1627163 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1627124 ATATATATAT
1627134 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1627164 TTGTACCTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1628016 original size:2 final size:2
Alignment explanation
Indices: 1628009--1628044 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
1627999 GTCCTAAATT
*
1628009 TA TA TA TA TA TA TA TA TA TA TA TT TA TA -A TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1628045 GTGTGTGTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:1630107 original size:33 final size:35
Alignment explanation
Indices: 1630067--1630160 Score: 106
Period size: 33 Copynumber: 2.8 Consensus size: 35
1630057 TATATATATG
**
1630067 TATAAATTTTAATATTTTAAT-TATTTATATTACA
1 TATAAATTTTAATATTAGAATATATTTATATTACA
*
1630101 TA-AAATTTTAATA-TAGAATATATTTATATTATA
1 TATAAATTTTAATATTAGAATATATTTATATTACA
* *
1630134 TATTAATTTTTATATTA-AATTATATTT
1 TATAAATTTTAATATTAGAA-TATATTT
1630161 TTTTAATGTT
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
32 4 0.08
33 25 0.49
34 13 0.25
35 9 0.18
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (35 bp):
TATAAATTTTAATATTAGAATATATTTATATTACA
Found at i:1630147 original size:19 final size:18
Alignment explanation
Indices: 1630118--1630162 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
1630108 TTAATATAGA
*
1630118 ATATATTTATATTATATATT
1 ATATTTTTATATTA-A-ATT
1630138 A-ATTTTTATATTAAATT
1 ATATTTTTATATTAAATT
1630155 ATATTTTT
1 ATATTTTT
1630163 TTAATGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 4 0.17
18 7 0.30
19 11 0.48
20 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATATTTTTATATTAAATT
Found at i:1630163 original size:19 final size:19
Alignment explanation
Indices: 1630123--1630162 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
1630113 ATAGAATATA
1630123 TTTATATTATATATTAATT
1 TTTATATTATATATTAATT
1630142 TTTATATTA-A-ATTATATT
1 TTTATATTATATATTA-ATT
1630160 TTT
1 TTT
1630163 TTAATGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 7 0.35
19 9 0.45
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTATATTATATATTAATT
Found at i:1630481 original size:17 final size:17
Alignment explanation
Indices: 1630456--1630495 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
1630446 CTGAAAATAC
*
1630456 CATCCCTGCAAATTACT
1 CATCGCTGCAAATTACT
*
1630473 CATCGCTGCTAATTACT
1 CATCGCTGCAAATTACT
*
1630490 CGTCGC
1 CATCGC
1630496 ATTTAAAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.23, C:0.35, G:0.12, T:0.30
Consensus pattern (17 bp):
CATCGCTGCAAATTACT
Found at i:1630537 original size:12 final size:12
Alignment explanation
Indices: 1630520--1630546 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
1630510 GATGCAAGCT
1630520 TTTATAACAGTG
1 TTTATAACAGTG
1630532 TTTATAACAGTG
1 TTTATAACAGTG
1630544 TTT
1 TTT
1630547 TAGAGTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.15, T:0.48
Consensus pattern (12 bp):
TTTATAACAGTG
Found at i:1633024 original size:21 final size:21
Alignment explanation
Indices: 1632990--1633039 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 21
1632980 ATATAATATG
1632990 ATTATAAAATATT-AATATAAT
1 ATTA-AAAATATTAAATATAAT
1633011 ATTAAAAATAATTAAAATATAAT
1 ATTAAAAAT-ATT-AAATATAAT
1633034 A-TAAAA
1 ATTAAAA
1633040 TATGATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 5 0.19
21 7 0.27
22 5 0.19
23 9 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (21 bp):
ATTAAAAATATTAAATATAAT
Found at i:1633038 original size:12 final size:12
Alignment explanation
Indices: 1633003--1633049 Score: 62
Period size: 12 Copynumber: 4.0 Consensus size: 12
1632993 ATAAAATATT
1633003 AATATAATATTAA
1 AATATAATA-TAA
1633016 AA-ATAAT-TAA
1 AATATAATATAA
1633026 AATATAATATAA
1 AATATAATATAA
*
1633038 AATATGATATAA
1 AATATAATATAA
1633050 CACTAATAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
10 5 0.16
11 5 0.16
12 19 0.61
13 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (12 bp):
AATATAATATAA
Found at i:1633040 original size:21 final size:19
Alignment explanation
Indices: 1632992--1633041 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 19
1632982 ATAATATGAT
1632992 TATAAAAT-ATTAATATAA
1 TATAAAATAATTAATATAA
1633010 TATTAAAAATAATTAAAATATAA
1 TA-T-AAAATAATT--AATATAA
1633033 TATAAAATA
1 TATAAAATA
1633042 TGATATAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 2 0.07
19 1 0.04
20 5 0.19
21 9 0.33
22 1 0.04
23 9 0.33
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TATAAAATAATTAATATAA
Found at i:1633108 original size:17 final size:16
Alignment explanation
Indices: 1633088--1633137 Score: 50
Period size: 15 Copynumber: 3.1 Consensus size: 16
1633078 AATATATAAA
1633088 AATATTAAAATTTATAT
1 AATATTAAAA-TTATAT
1633105 AATA-T-AAATTATTAT
1 AATATTAAAATTA-TAT
*
1633120 TATATTAAAAATTATAT
1 AATATT-AAAATTATAT
1633137 A
1 A
1633138 TTTTGAAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
14 3 0.11
15 9 0.33
16 2 0.07
17 7 0.26
18 6 0.22
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
AATATTAAAATTATAT
Found at i:1633299 original size:12 final size:14
Alignment explanation
Indices: 1633266--1633304 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
1633256 ATAATTTTTT
1633266 TATTTTTTAAATTA
1 TATTTTTTAAATTA
1633280 TATTTTTTAAATTA
1 TATTTTTTAAATTA
*
1633294 -ATTTTTAAAAT
1 TATTTTTTAAAT
1633305 GTGCTAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 10 0.42
14 14 0.58
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTTTTTAAATTA
Found at i:1633460 original size:8 final size:8
Alignment explanation
Indices: 1633407--1633487 Score: 72
Period size: 8 Copynumber: 9.6 Consensus size: 8
1633397 TATAATTTAT
1633407 TTAAATAAA
1 TTAAA-AAA
1633416 TTAAAAAA
1 TTAAAAAA
*
1633424 ATAAAAAA
1 TTAAAAAA
* * *
1633432 TTTATACA
1 TTAAAAAA
*
1633440 TTAAAAATT
1 TTAAAAA-A
1633449 TTAAAAAA
1 TTAAAAAA
*
1633457 TTAAAATAT
1 TTAAAA-AA
1633466 TTAAATAAA
1 TTAAA-AAA
1633475 TTAAAAAA
1 TTAAAAAA
1633483 TTAAA
1 TTAAA
1633488 TAAAAAACAA
Statistics
Matches: 57, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
8 32 0.56
9 24 0.42
10 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (8 bp):
TTAAAAAA
Found at i:1633486 original size:17 final size:17
Alignment explanation
Indices: 1633407--1633491 Score: 77
Period size: 17 Copynumber: 5.0 Consensus size: 17
1633397 TATAATTTAT
1633407 TTAAATAAATTAAA-AAA
1 TTAAA-AAATTAAATAAA
* * *
1633424 ATAAAAAATT-TATACA
1 TTAAAAAATTAAATAAA
*
1633440 TTAAAAATTTTAAA-AAA
1 TTAAAAA-ATTAAATAAA
*
1633457 TTAAAATATTTAAATAAA
1 TTAAAA-AATTAAATAAA
1633475 TTAAAAAATTAAATAAA
1 TTAAAAAATTAAATAAA
1633492 AAACAAAAGA
Statistics
Matches: 55, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
15 1 0.02
16 13 0.24
17 30 0.55
18 11 0.20
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (17 bp):
TTAAAAAATTAAATAAA
Found at i:1633547 original size:2 final size:2
Alignment explanation
Indices: 1633540--1633635 Score: 91
Period size: 2 Copynumber: 51.5 Consensus size: 2
1633530 TATTATATGT
*
1633540 TA TA TA TA TA TA TA TA TA -A CA TA TA TA -A TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
1633579 TA -A TA -A TA TA AA TA TA TA -A TA GA TA TA -A TA TA TA TA GTA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
*
1633618 CA TA TA TA TA -A TA TA TA T
1 TA TA TA TA TA TA TA TA TA T
1633636 CACATATAAT
Statistics
Matches: 78, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
1 8 0.10
2 68 0.87
3 2 0.03
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (2 bp):
TA
Found at i:1633635 original size:9 final size:9
Alignment explanation
Indices: 1633540--1633635 Score: 87
Period size: 9 Copynumber: 10.8 Consensus size: 9
1633530 TATTATATGT
1633540 TATATATATA
1 TATATATA-A
1633550 TATATATAA
1 TATATATAA
*
1633559 CATATAT-A
1 TATATATAA
1633567 -ATATAT-A
1 TATATATAA
1633574 -ATATATAA
1 TATATATAA
1633582 TA-ATATAA
1 TATATATAA
1633590 -ATATATAA
1 TATATATAA
*
1633598 TAGATATAATA
1 TATATAT-A-A
1633609 TATATAGTACA
1 TATATA-TA-A
1633620 TATATATAA
1 TATATATAA
1633629 TATATAT
1 TATATAT
1633636 CACATATAAT
Statistics
Matches: 75, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
7 14 0.19
8 14 0.19
9 21 0.28
10 11 0.15
11 14 0.19
12 1 0.01
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (9 bp):
TATATATAA
Found at i:1633644 original size:16 final size:16
Alignment explanation
Indices: 1633541--1633647 Score: 105
Period size: 16 Copynumber: 6.7 Consensus size: 16
1633531 ATTATATGTT
1633541 ATATATATATATATATA
1 ATATATA-ATATATATA
*
1633558 ACATAT-ATAATATATA
1 ATATATAAT-ATATATA
1633574 ATATATAATA-ATATAA
1 ATATATAATATATAT-A
*
1633590 ATATATAATAGATATA
1 ATATATAATATATATA
*
1633606 ATATAT-ATAGTACAT-
1 ATATATAATA-TATATA
*
1633621 ATATATAATATATATC
1 ATATATAATATATATA
*
1633637 ACATATAATAT
1 ATATATAATAT
1633648 TTTATTTATT
Statistics
Matches: 77, Mismatches: 6, Indels: 15
0.79 0.06 0.15
Matches are distributed among these distances:
15 19 0.25
16 47 0.61
17 11 0.14
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.40
Consensus pattern (16 bp):
ATATATAATATATATA
Found at i:1633691 original size:20 final size:21
Alignment explanation
Indices: 1633642--1633693 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
1633632 ATATCACATA
*
1633642 TAATATT-TTATTTATTTTTT
1 TAATATTATTTTTTATTTTTT
1633662 TAGA-AGTTATTTTTTA-TTTTT
1 TA-ATA-TTATTTTTTATTTTTT
1633683 TAATATTATTT
1 TAATATTATTT
1633694 ATATAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
20 10 0.37
21 11 0.41
22 6 0.22
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (21 bp):
TAATATTATTTTTTATTTTTT
Found at i:1634058 original size:89 final size:89
Alignment explanation
Indices: 1633729--1634734 Score: 1076
Period size: 89 Copynumber: 11.3 Consensus size: 89
1633719 AGATTTTTTA
* **** * *
1633729 TGACACGACTAGAAAATATTTGATTAATATAAAATAAAATTT-TTGTAACTCGAAAGATGTGAC-
1 TGACACGAC-AGAAAATATTTGACTAATGCCTAAT-AAATTTCTTGGAACCCGAAAGATGTGACA
** * *
1633792 GATGCATATGGGTATCAGATTCCTTT
64 GATGCATGCGGATATCAGATTCCTTC
** * **** * *
1633818 TGACATAACAAAAAATATTTGACTAATATAAAATAAAATTT-TTGGAATCCGAAAGATGTGATAG
1 TGACACGACAGAAAATATTTGACTAATGCCTAAT-AAATTTCTTGGAACCCGAAAGATGTGACAG
* *
1633882 ATGCATGC-AAGTATCATATTCCTTC
65 ATGCATGCGGA-TATCAGATTCCTTC
* * * * * *
1633907 TGACATGACTGACAAAAATTTAACTAATGCCTAACAAATTTCTTGAAACCCGAAAGATGTGACAG
1 TGACACGACAGA-AAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTGACAG
* *
1633972 ATGCATGCGGATATCAGATTCTTTT
65 ATGCATGCGGATATCAGATTCCTTC
* * *
1633997 TGACACAACAGAAAATATTTGACTAATGGCTAATAAATTTCTTGGAACTCGAAAGATGTGACAGA
1 TGACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTGACAGA
* * *
1634062 TGCATGC-AAGTATAAGGTTCCTTC
66 TGCATGCGGA-TATCAGATTCCTTC
* * * * ** *
1634086 TGACACAACAGAATATATATGACTAATACCTAATAAATTTCTTAAAACCCAAAAGATGTGACAGA
1 TGACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTGACAGA
* * *
1634151 TGTATGCGGGTATCAAATTCCTTC
66 TGCATGCGGATATCAGATTCCTTC
* *
1634175 TGACACAACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTAACAGA
1 TGACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTGACAGA
*
1634240 TGCATGCGGGTATCA-AGTTCCTTC
66 TGCATGCGGATATCAGA-TTCCTTC
* * * * * * ** *
1634264 TAACACGATAGAAAGTATATGACTAATGTCTAATAAATTTTTTGGAACTTGAAAGATGTGATAGA
1 TGACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTGACAGA
*
1634329 TGCATGCGGATATCAAATTCCTTC
66 TGCATGCGGATATCAGATTCCTTC
* * * * ** *
1634353 TGACACAACATAAAATATTTGACTAATGCATAAT-AATTTTTTAAAACCCAAAAGATGTGACAGA
1 TGACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTGACAGA
*
1634417 TGTATGC-GAGTATCAGATTCCTTC
66 TGCATGCGGA-TATCAGATTCCTTC
* * * * *
1634441 TAACACGACATAAAATATTTGACTAATGCCTAATAAATTTTTTAGAACCCAAAAGATGTGACAGA
1 TGACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTGACAGA
* *
1634506 TGCATG-TGAGTATCAGATTCCTTT
66 TGCATGCGGA-TATCAGATTCCTTC
* *
1634530 TGACACGACATAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTGACAAA
1 TGACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTGACAGA
* * * *
1634595 TGTATGTGGGTATCAGATTCCTTT
66 TGCATGCGGATATCAGATTCCTTC
* * * * *
1634619 TAACACGACATAAAATATTTGACTAATACCTAATAAATTTCTTGAAACCCGAAAGATATGACAGA
1 TGACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTGACAGA
* * *
1634684 TGCATGTGGGTATCAGATTCTTTC
66 TGCATGCGGATATCAGATTCCTTC
1634708 TGACACGACAGAAAATATTTGACTAAT
1 TGACACGACAGAAAATATTTGACTAAT
1634735 CATATGACAG
Statistics
Matches: 785, Mismatches: 119, Indels: 26
0.84 0.13 0.03
Matches are distributed among these distances:
87 2 0.00
88 123 0.16
89 594 0.76
90 65 0.08
91 1 0.00
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (89 bp):
TGACACGACAGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTGACAGA
TGCATGCGGATATCAGATTCCTTC
Found at i:1634569 original size:444 final size:446
Alignment explanation
Indices: 1633739--1634734 Score: 1218
Period size: 444 Copynumber: 2.2 Consensus size: 446
1633729 TGACACGACT
* *** * * * * **
1633739 AGAAAATATTTGATTAATATAAAATAAAATTT-TTGTAACTCGAAAGATGTGAC-GATGCATATG
1 AGAAAATATTTGACTAATACCTAAT-AAATTTCTTGAAACCCGAAAGATATAACAGATGCATGCG
* * ** * * * **
1633802 GGTATCAGATTCCTTTTGACATAACAAAAAATATTTGACTAATATAAAATAAAATTTTTGGAATC
65 GGTATCAGATTCCTTCTAACACGACAGAAAATATATGACTAATGTCTAATAAAATTTTTGGAATC
* **
1633867 CGAAAGATGTGATAGATGCATGCAAGTATCATATTCCTTCTGACATGACTGACAAAAATTTAACT
130 CGAAAGATGTGATAGATGCATGCAAGTATCAAATTCCTTCTGACACAACTGACAAAAATTTAACT
* * * * *
1633932 AATGCCTAACAAATTTCTTGAAACCCGAAAGATGTGACAGATGCATGCGGATATCAGATTCTTTT
195 AATGCATAACAAATTTCTTAAAACCCAAAAGATGTGACAGATGCATGCGGATATCAGATTCCTTC
* * * * *
1633997 TGACACAACAGAAAATATTTGACTAATGGCTAATAAATTTCTTGGAACTCGAAAGATGTGACAGA
260 TAACACAACAGAAAATATTTGACTAATGCCTAATAAATTTCTTAGAACCCAAAAGATGTGACAGA
* *
1634062 TGCATGCAAGTATAAGGTTCCTTCTGACACAACAGAATATATATGACTAATACCTAATAAATTTC
325 TGCATGCAAGTATAAGATTCCTTCTGACACAACAGAAAATATATGACTAATACCTAATAAATTTC
* *
1634127 TTAAAACCCAAAAGATGTGACAGATGTATGCGGGTATCAAATTCCTTCTGACACAAC
390 TTAAAACCCAAAAGATGTGACAAATGTATGCGGGTATCAAATTCCTTCTAACACAAC
* * *
1634184 AGAAAATATTTGACTAATGCCTAATAAATTTCTTGGAACCCGAAAGATGTAACAGATGCATGCGG
1 AGAAAATATTTGACTAATACCTAATAAATTTCTTGAAACCCGAAAGATATAACAGATGCATGCGG
* * *
1634249 GTATCA-AGTTCCTTCTAACACGATAGAAAGTATATGACTAATGTCTAATAAATTTTTTGGAA-C
66 GTATCAGA-TTCCTTCTAACACGACAGAAAATATATGACTAATGTCTAATAAAATTTTTGGAATC
* * * *
1634312 TTGAAAGATGTGATAGATGCATGC-GGATATCAAATTCCTTCTGACACAACAT-A-AAATATTTG
130 -CGAAAGATGTGATAGATGCATGCAAG-TATCAAATTCCTTCTGACACAAC-TGACAAAAATTTA
* * *
1634374 ACTAATGCATAA-TAATTTTTTAAAACCCAAAAGATGTGACAGATGTATGC-GAGTATCAGATTC
192 ACTAATGCATAACAAATTTCTTAAAACCCAAAAGATGTGACAGATGCATGCGGA-TATCAGATTC
* * *
1634437 CTTCTAACACGACATAAAATATTTGACTAATGCCTAATAAATTTTTTAGAACCCAAAAGATGTGA
256 CTTCTAACACAACAGAAAATATTTGACTAATGCCTAATAAATTTCTTAGAACCCAAAAGATGTGA
** * * * * * *
1634502 CAGATGCATGTGAGTATCAGATTCCTTTTGACACGACATAAAATATTTGACTAATGCCTAATAAA
321 CAGATGCATGCAAGTATAAGATTCCTTCTGACACAACAGAAAATATATGACTAATACCTAATAAA
** * * * * *
1634567 TTTCTTGGAACCCGAAAGATGTGACAAATGTATGTGGGTATCAGATTCCTTTTAACACGAC
386 TTTCTTAAAACCCAAAAGATGTGACAAATGTATGCGGGTATCAAATTCCTTCTAACACAAC
* * *
1634628 ATAAAATATTTGACTAATACCTAATAAATTTCTTGAAACCCGAAAGATATGACAGATGCATGTGG
1 AGAAAATATTTGACTAATACCTAATAAATTTCTTGAAACCCGAAAGATATAACAGATGCATGCGG
* * *
1634693 GTATCAGATTCTTTCTGACACGACAGAAAATATTTGACTAAT
66 GTATCAGATTCCTTCTAACACGACAGAAAATATATGACTAAT
1634735 CATATGACAG
Statistics
Matches: 468, Mismatches: 75, Indels: 17
0.84 0.13 0.03
Matches are distributed among these distances:
443 2 0.00
444 305 0.65
445 60 0.13
446 100 0.21
447 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.30
Consensus pattern (446 bp):
AGAAAATATTTGACTAATACCTAATAAATTTCTTGAAACCCGAAAGATATAACAGATGCATGCGG
GTATCAGATTCCTTCTAACACGACAGAAAATATATGACTAATGTCTAATAAAATTTTTGGAATCC
GAAAGATGTGATAGATGCATGCAAGTATCAAATTCCTTCTGACACAACTGACAAAAATTTAACTA
ATGCATAACAAATTTCTTAAAACCCAAAAGATGTGACAGATGCATGCGGATATCAGATTCCTTCT
AACACAACAGAAAATATTTGACTAATGCCTAATAAATTTCTTAGAACCCAAAAGATGTGACAGAT
GCATGCAAGTATAAGATTCCTTCTGACACAACAGAAAATATATGACTAATACCTAATAAATTTCT
TAAAACCCAAAAGATGTGACAAATGTATGCGGGTATCAAATTCCTTCTAACACAAC
Found at i:1638217 original size:2 final size:2
Alignment explanation
Indices: 1638208--1638436 Score: 86
Period size: 2 Copynumber: 128.5 Consensus size: 2
1638198 AAAAAATAAA
*
1638208 AT AT -T AT AT AT -T AT AT AT -T AT GT AT AT AT AT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
1638246 AT A- AT AT AT -T AT -T AT AT -T AT -T AT TT AT AT AGT -T GT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
* * *
1638283 AT AT -T AT AT TT AT GT AT AT A- AT A- AA AT AT AT -T AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
1638320 TT AT GT AT AT AT AT AT AT -T AT AT -T AT AT AT AT -T AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
1638358 AT -T AT TT AT AT AGT -T GT TT AT AT AT AT TT TT AT -T A- AT AT
1 AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
1638397 A- AT AT A- AT A- AC AT A- AT AT AT AT A- AT AT A- AC AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1638432 AT AT A
1 AT AT A
1638437 AAAAATTTAC
Statistics
Matches: 172, Mismatches: 23, Indels: 64
0.66 0.09 0.25
Matches are distributed among these distances:
1 30 0.17
2 140 0.81
3 2 0.01
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (2 bp):
AT
Found at i:1638273 original size:51 final size:46
Alignment explanation
Indices: 1638208--1638384 Score: 153
Period size: 49 Copynumber: 3.7 Consensus size: 46
1638198 AAAAAATAAA
*
1638208 ATATTATATATTATATATTATGTATATATATATATAATATAATATATTATT
1 ATATTATAT-TTATATAGT-TGTATATATATATAT-ATAT-ATATA-TATT
* * * *
1638259 ATATTATTATTTATATAGTTGTTTATAT-TATATTTATGTATATAAT
1 ATATTA-TATTTATATAGTTGTATATATATATATATATATATATATT
* * *
1638305 AAAATATA-TTAT-TATTTATGTATATATATATATTATATTATATATATT
1 ATATTATATTTATATA-GT-TGTATATATATATA-TATA-TATATATATT
*
1638353 ATATTATTATTTATATAGTTGTTTATATATAT
1 ATATTA-TATTTATATAGTTGTATATATATAT
1638385 TTTTATTAAT
Statistics
Matches: 101, Mismatches: 16, Indels: 20
0.74 0.12 0.15
Matches are distributed among these distances:
43 2 0.02
44 5 0.05
45 10 0.10
46 11 0.11
47 7 0.07
48 15 0.15
49 19 0.19
50 13 0.13
51 16 0.16
52 3 0.03
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (46 bp):
ATATTATATTTATATAGTTGTATATATATATATATATATATATATT
Found at i:1638328 original size:95 final size:95
Alignment explanation
Indices: 1638213--1638405 Score: 302
Period size: 95 Copynumber: 2.0 Consensus size: 95
1638203 ATAAAATATT
1638213 ATATATTATATATTATGTATATATATATATAATATAATATATTATTATATTATTATTTATATAGT
1 ATATATTATATATTATGTATATATATATATAATATAATATA-TATTATATTATTATTTATATAGT
1638278 TGTTTATAT-TATATTTATGT-ATATAATAAA
65 TGTTTATATATATATTTAT-TAATATAATAAA
* *
1638308 ATATATTAT-TATTTATGTATATATATATATTATATTATATATATTATATTATTATTTATATAGT
1 ATATATTATATA-TTATGTATATATATATATAATATAATATATATTATATTATTATTTATATAGT
* *
1638372 TGTTTATATATATTTTTATTAATATAATATA
65 TGTTTATATATATATTTATTAATATAATAAA
1638403 ATA
1 ATA
1638406 ACATAATATA
Statistics
Matches: 91, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
94 35 0.38
95 56 0.62
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (95 bp):
ATATATTATATATTATGTATATATATATATAATATAATATATATTATATTATTATTTATATAGTT
GTTTATATATATATTTATTAATATAATAAA
Found at i:1641077 original size:12 final size:12
Alignment explanation
Indices: 1641060--1641086 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
1641050 AATAACTCTA
1641060 AAACACTGTTAT
1 AAACACTGTTAT
1641072 AAACACTGTTAT
1 AAACACTGTTAT
1641084 AAA
1 AAA
1641087 AGCTGCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (12 bp):
AAACACTGTTAT
Found at i:1641737 original size:16 final size:15
Alignment explanation
Indices: 1641718--1641752 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
1641708 ATTATTAGTT
1641718 AATAATATTAAAATAA
1 AATAATATTAAAA-AA
*
1641734 AATAATATTTAAAAA
1 AATAATATTAAAAAA
1641749 AATA
1 AATA
1641753 TTAATTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AATAATATTAAAAAA
Found at i:1646152 original size:14 final size:15
Alignment explanation
Indices: 1646120--1646149 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
1646110 GGTATATCAA
1646120 AAAATATTTATTTTTT
1 AAAATATTTA-TTTTT
1646136 AAAATATTTATTTT
1 AAAATATTTATTTT
1646150 AAATTTGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
AAAATATTTATTTTT
Found at i:1648042 original size:119 final size:119
Alignment explanation
Indices: 1647813--1648050 Score: 394
Period size: 119 Copynumber: 2.0 Consensus size: 119
1647803 TGTACCGAGC
1647813 AACTCCCCTTTCCCTATTTCTATAAACTAAGACATCCAAAATAACAACGCAGAATAATAACAACA
1 AACTCCCCTTTCCCTATTTCTATAAACTAAGACATCCAAAATAACAACGCAGAATAATAACAACA
* *
1647878 TGATGCGTGCAAATAGGGAGGATGGAATCAAACTTCCTAAAAAAAAAAGAGAAAT
66 TGAGGCATGCAAATAGGGAGGATGGAATCAAACTTCCT-AAAAAAAAAGAGAAAT
1647933 AACT-CCCTTTCCCTATTTCTATAAACTAAGACATCCAAAATAACAACGCAGAATAATAACAACA
1 AACTCCCCTTTCCCTATTTCTATAAACTAAGACATCCAAAATAACAACGCAGAATAATAACAACA
1647997 TGAGGCATGCAAATAGGGA-GAT-G-ATCAGAACTTCCTAAAATAAAAAAGAGAAAT
66 TGAGGCATGCAAATAGGGAGGATGGAATCA-AACTTCCT-AAA-AAAAAAGAGAAAT
1648051 TCAAAGACTG
Statistics
Matches: 114, Mismatches: 2, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
116 4 0.04
117 13 0.11
118 16 0.14
119 77 0.68
120 4 0.04
ACGTcount: A:0.46, C:0.20, G:0.13, T:0.21
Consensus pattern (119 bp):
AACTCCCCTTTCCCTATTTCTATAAACTAAGACATCCAAAATAACAACGCAGAATAATAACAACA
TGAGGCATGCAAATAGGGAGGATGGAATCAAACTTCCTAAAAAAAAAGAGAAAT
Found at i:1648572 original size:22 final size:20
Alignment explanation
Indices: 1648542--1648581 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
1648532 TTATTTATAA
1648542 GTAATATTTTAAGAAAAATGG
1 GTAATA-TTTAAGAAAAATGG
1648563 GTAATTATTTAAGAAAAAT
1 GTAA-TATTTAAGAAAAAT
1648582 AGTTAATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (20 bp):
GTAATATTTAAGAAAAATGG
Found at i:1648588 original size:21 final size:21
Alignment explanation
Indices: 1648549--1648589 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
1648539 TAAGTAATAT
*
1648549 TTTAAGAAAAATGGGTAATTA
1 TTTAAGAAAAATAGGTAATTA
*
1648570 TTTAAGAAAAATAGTTAATT
1 TTTAAGAAAAATAGGTAATT
1648590 CTTTGCAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.37
Consensus pattern (21 bp):
TTTAAGAAAAATAGGTAATTA
Found at i:1648683 original size:17 final size:18
Alignment explanation
Indices: 1648658--1648692 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
1648648 CTTTATACAC
1648658 ATTATTTTTTTAAAAAAA
1 ATTATTTTTTTAAAAAAA
1648676 ATTA-TTTTTTAAAAAAA
1 ATTATTTTTTTAAAAAAA
1648693 GAATCGATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTATTTTTTTAAAAAAA
Found at i:1652979 original size:24 final size:27
Alignment explanation
Indices: 1652938--1652992 Score: 80
Period size: 24 Copynumber: 2.1 Consensus size: 27
1652928 GGAGAGAAGA
1652938 AAAGGAGAGGAGAGAGAAAG-AGG-AT
1 AAAGGAGAGGAGAGAGAAAGAAGGAAT
*
1652963 AAAGGATA-GAGAGAGAAAGAAGGAAT
1 AAAGGAGAGGAGAGAGAAAGAAGGAAT
1652989 AAAG
1 AAAG
1652993 AGGGGGAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 11 0.41
25 10 0.37
26 6 0.22
ACGTcount: A:0.56, C:0.00, G:0.38, T:0.05
Consensus pattern (27 bp):
AAAGGAGAGGAGAGAGAAAGAAGGAAT
Found at i:1654550 original size:15 final size:15
Alignment explanation
Indices: 1654526--1654555 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1654516 CTCAAAAATA
1654526 AAAAAGAAAAAAACT
1 AAAAAGAAAAAAACT
*
1654541 AAAAATAAAAAAACT
1 AAAAAGAAAAAAACT
1654556 TACTACTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.80, C:0.07, G:0.03, T:0.10
Consensus pattern (15 bp):
AAAAAGAAAAAAACT
Found at i:1654657 original size:21 final size:19
Alignment explanation
Indices: 1654633--1654683 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
1654623 TCTGTTATTT
1654633 TCTTTTTGTTTTTCTTTTGTG
1 TCTTTTT-TTTTTCTTTTG-G
*
1654654 TCTTTTTCTTTTCTTTTGG
1 TCTTTTTTTTTTCTTTTGG
*
1654673 ACTTTTTTTTT
1 TCTTTTTTTTT
1654684 CTTCTTGTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 10 0.37
20 10 0.37
21 7 0.26
ACGTcount: A:0.02, C:0.12, G:0.10, T:0.76
Consensus pattern (19 bp):
TCTTTTTTTTTTCTTTTGG
Found at i:1654665 original size:20 final size:19
Alignment explanation
Indices: 1654636--1654691 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
1654626 GTTATTTTCT
*
1654636 TTTTGTTTTTCTTTTGTGTC
1 TTTT-TTTTTCTTTTGTGAC
1654656 TTTTTCTTTTCTTTTG-GAC
1 TTTTT-TTTTCTTTTGTGAC
1654675 TTTTTTTTTCTTCTTGT
1 TTTTTTTTTCTT-TTGT
1654692 TCCAAATTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 7 0.22
19 11 0.34
20 14 0.44
ACGTcount: A:0.02, C:0.12, G:0.11, T:0.75
Consensus pattern (19 bp):
TTTTTTTTTCTTTTGTGAC
Found at i:1655522 original size:19 final size:19
Alignment explanation
Indices: 1655498--1655564 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 19
1655488 AATTTGTTTT
1655498 AAAGAAAAAAGAAAAAATG
1 AAAGAAAAAAGAAAAAATG
*
1655517 AAAG-AAAAAGACAGAAATGG
1 AAAGAAAAAAGA-AAAAAT-G
1655537 AAAGAACAGAAAGAAAGAAA-G
1 AAAGAA-A-AAAGAAA-AAATG
1655558 AAAGAAA
1 AAAGAAA
1655565 GAAAAGAACA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
18 7 0.17
19 9 0.22
20 6 0.15
21 8 0.20
22 2 0.05
23 8 0.20
ACGTcount: A:0.73, C:0.03, G:0.21, T:0.03
Consensus pattern (19 bp):
AAAGAAAAAAGAAAAAATG
Found at i:1655550 original size:41 final size:39
Alignment explanation
Indices: 1655498--1655605 Score: 109
Period size: 41 Copynumber: 2.7 Consensus size: 39
1655488 AATTTGTTTT
1655498 AAAGAAA-AAAGAAAAAATGAAAGAAA-AAGACAGAA-ATGG
1 AAAGAAAGAAAGAAAAAA-GAAAGAAAGAA-A-AGAACATGG
1655537 AAAGAACAGAAAGAAAGAAAGAAAGAAAGAAAAGAACATGG
1 AAAGAA-AGAAAGAAA-AAAGAAAGAAAGAAAAGAACATGG
* *
1655578 -AAGAAGAGAAA-AGAAAAGAAAAAAAGAA
1 AAAGAA-AGAAAGAAAAAAGAAAGAAAGAA
1655606 TACAAGAATA
Statistics
Matches: 61, Mismatches: 3, Indels: 11
0.81 0.04 0.15
Matches are distributed among these distances:
38 13 0.21
39 8 0.13
40 15 0.25
41 20 0.33
42 5 0.08
ACGTcount: A:0.72, C:0.03, G:0.22, T:0.03
Consensus pattern (39 bp):
AAAGAAAGAAAGAAAAAAGAAAGAAAGAAAAGAACATGG
Found at i:1655553 original size:4 final size:4
Alignment explanation
Indices: 1655498--1655686 Score: 73
Period size: 4 Copynumber: 43.5 Consensus size: 4
1655488 AATTTGTTTT
*
1655498 AAAG AAA- AAAG AAA- AAATG AAAG -AA- AAAG ACAG AAATGG AAAG AACAG
1 AAAG AAAG AAAG AAAG AAA-G AAAG AAAG AAAG AAAG AAA--G AAAG AA-AG
*
1655546 AAAG AAAG AAAG AAAG AAAG AAAAG AACATG GAAG AAGAG AAAAG AAAAG
1 AAAG AAAG AAAG AAAG AAAG -AAAG AA-A-G AAAG AA-AG -AAAG -AAAG
* * * * * *
1655596 AAAA AAAG AATA- CAAG AATAG AAAG AGAC AAGG AAAAG ACACG AAAAG
1 AAAG AAAG AA-AG AAAG AA-AG AAAG AAAG AAAG -AAAG A-AAG -AAAG
* *
1655644 AAAG AGACAG AATAG AACG AAGG ATAAG AAAG AAAAG AAAG AA
1 AAAG A-A-AG AA-AG AAAG AAAG A-AAG AAAG -AAAG AAAG AA
1655687 TAAATAAAAA
Statistics
Matches: 142, Mismatches: 20, Indels: 46
0.68 0.10 0.22
Matches are distributed among these distances:
3 11 0.08
4 72 0.51
5 47 0.33
6 12 0.08
ACGTcount: A:0.68, C:0.05, G:0.23, T:0.04
Consensus pattern (4 bp):
AAAG
Found at i:1655593 original size:45 final size:45
Alignment explanation
Indices: 1655498--1655605 Score: 109
Period size: 45 Copynumber: 2.4 Consensus size: 45
1655488 AATTTGTTTT
1655498 AAAGAAA-AAAGAAA-AAATGAAAGAAAAAGACAGAAATGGAAAGA
1 AAAGAAAGAAAGAAAGAAATGAAAGAAAAAGACAGAAA-GGAAAGA
* *
1655542 ACAGAAAGAAAGAAAGAAA-GAAAG-AAAAGAACATGGAA-GAAGAGA
1 AAAGAAAGAAAGAAAGAAATGAAAGAAAAAG-ACA-GAAAGGAA-AGA
*
1655587 AAAGAAAAGAAAAAAAGAA
1 AAAG-AAAGAAAGAAAGAA
1655606 TACAAGAATA
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
44 14 0.26
45 21 0.39
46 19 0.35
ACGTcount: A:0.72, C:0.03, G:0.22, T:0.03
Consensus pattern (45 bp):
AAAGAAAGAAAGAAAGAAATGAAAGAAAAAGACAGAAAGGAAAGA
Found at i:1655621 original size:50 final size:50
Alignment explanation
Indices: 1655498--1655634 Score: 123
Period size: 50 Copynumber: 2.9 Consensus size: 50
1655488 AATTTGTTTT
*
1655498 AAAG-AAAAAAGAAA-AAATGAAAGAAAA-AGAC-A-GAAATG-G-AAAGA
1 AAAGAAAAAAAGAAAGAAA-GAAAGAAAAGAGACAAGGAAAAGAGAAAAGA
* * *
1655542 ACAGAAAGAAAGAAAGAAAGAAAGAAAAGA-ACATGGAAGAAGAGAAAAGA
1 AAAGAAAAAAAGAAAGAAAGAAAGAAAAGAGACAAGGAA-AAGAGAAAAGA
*
1655592 AAAGAAAAAAAGAATA-CAAGAATAG-AAAGAGACAAGGAAAAGA
1 AAAGAAAAAAAGAA-AGAAAGAA-AGAAAAGAGACAAGGAAAAGA
1655635 CACGAAAAGA
Statistics
Matches: 74, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
44 3 0.04
45 20 0.27
46 4 0.05
47 3 0.04
48 2 0.03
49 1 0.01
50 31 0.42
51 10 0.14
ACGTcount: A:0.70, C:0.04, G:0.23, T:0.04
Consensus pattern (50 bp):
AAAGAAAAAAAGAAAGAAAGAAAGAAAAGAGACAAGGAAAAGAGAAAAGA
Found at i:1656744 original size:9 final size:8
Alignment explanation
Indices: 1656726--1656829 Score: 74
Period size: 7 Copynumber: 13.2 Consensus size: 8
1656716 AACAGTAATT
1656726 AAAGAAAA
1 AAAGAAAA
1656734 AAAGTAAAA
1 AAAG-AAAA
1656743 AAA-AAAA
1 AAAGAAAA
*
1656750 AAGGAAAA
1 AAAGAAAA
1656758 AAA-AAAA
1 AAAGAAAA
1656765 AAA-AAAA
1 AAAGAAAA
* * *
1656772 GAGGAATAC
1 AAAGAA-AA
*
1656781 GAAGAAAA
1 AAAGAAAA
*
1656789 AAA-AGAA
1 AAAGAAAA
1656796 AAAGAAAA
1 AAAGAAAA
1656804 AAA-AAAA
1 AAAGAAAA
*
1656811 GAAGAATAA
1 AAAGAA-AA
*
1656820 AACGAAAA
1 AAAGAAAA
1656828 AA
1 AA
1656830 TACCAGAGAT
Statistics
Matches: 76, Mismatches: 13, Indels: 14
0.74 0.13 0.14
Matches are distributed among these distances:
7 30 0.39
8 27 0.36
9 19 0.25
ACGTcount: A:0.82, C:0.02, G:0.13, T:0.03
Consensus pattern (8 bp):
AAAGAAAA
Found at i:1656767 original size:16 final size:15
Alignment explanation
Indices: 1656730--1656821 Score: 78
Period size: 15 Copynumber: 5.9 Consensus size: 15
1656720 GTAATTAAAG
1656730 AAAAAAAGTAAAAAAA
1 AAAAAAAG-AAAAAAA
*
1656746 AAAAAAGGAAAAAAA
1 AAAAAAAGAAAAAAA
*
1656761 AAAAAAA-AAAAGAGGA
1 AAAAAAAGAAAA-A-AA
* **
1656777 ATACGAAGAAAAAAA
1 AAAAAAAGAAAAAAA
*
1656792 AGAAAAAGAAAAAAA
1 AAAAAAAGAAAAAAA
*
1656807 AAAAGAAGAATAAAA
1 AAAAAAAGAA-AAAA
1656822 CGAAAAAATA
Statistics
Matches: 60, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
14 4 0.07
15 35 0.58
16 17 0.28
17 4 0.07
ACGTcount: A:0.83, C:0.01, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAAAAAGAAAAAAA
Found at i:1656799 original size:6 final size:6
Alignment explanation
Indices: 1656732--1656828 Score: 53
Period size: 6 Copynumber: 16.8 Consensus size: 6
1656722 AATTAAAGAA
* * *
1656732 AAAAAG TAAAA- AAAAA- AAAAGG AAAAA- AAAAA- AAAAA- AAAGAGG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA-AAG
* * * * * *
1656776 AATACG AAGAAA- AAAAAG AAAAAG AAAAAA AAAAAG AAGAAT AAAACG
1 AAAAAG AA-AAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG
1656824 AAAAA
1 AAAAA
1656829 ATACCAGAGA
Statistics
Matches: 69, Mismatches: 17, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
5 24 0.35
6 42 0.61
7 3 0.04
ACGTcount: A:0.81, C:0.02, G:0.13, T:0.03
Consensus pattern (6 bp):
AAAAAG
Found at i:1656825 original size:42 final size:40
Alignment explanation
Indices: 1656742--1656829 Score: 115
Period size: 41 Copynumber: 2.1 Consensus size: 40
1656732 AAAAAGTAAA
* *
1656742 AAAAAAAAAAGGAAAAAAAAAAAAAAAAAAGAGGAATACG
1 AAAAAAAAAAGGAAAAAAAAAAAAAAAAAAGAAGAAAACG
*
1656782 AAGAAAAAAAA-GAAAAAGAAAAAAAAAAAGAAGAATAAAACG
1 AA-AAAAAAAAGGAAAAA-AAAAAAAAAAA-AAGAAGAAAACG
1656824 AAAAAA
1 AAAAAA
1656830 TACCAGAGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
40 8 0.19
41 23 0.55
42 11 0.26
ACGTcount: A:0.82, C:0.02, G:0.14, T:0.02
Consensus pattern (40 bp):
AAAAAAAAAAGGAAAAAAAAAAAAAAAAAAGAAGAAAACG
Found at i:1656827 original size:39 final size:41
Alignment explanation
Indices: 1656744--1656829 Score: 115
Period size: 39 Copynumber: 2.1 Consensus size: 41
1656734 AAAGTAAAAA
* *
1656744 AAAAAAAAGGAAAAAAAAAAAAAAAAAAGAGGAATACGAAG
1 AAAAAAAAGGAAAAAAAAAAAAAAAAAAGAAGAATACAAAG
*
1656785 AAAAAAAA-G-AAAAAGAAAAAAAAAAAGAAGAATA-AAACG
1 AAAAAAAAGGAAAAAAAAAAAAAAAAAAGAAGAATACAAA-G
1656824 AAAAAA
1 AAAAAA
1656830 TACCAGAGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
38 2 0.05
39 30 0.73
40 1 0.02
41 8 0.20
ACGTcount: A:0.81, C:0.02, G:0.14, T:0.02
Consensus pattern (41 bp):
AAAAAAAAGGAAAAAAAAAAAAAAAAAAGAAGAATACAAAG
Found at i:1659600 original size:24 final size:24
Alignment explanation
Indices: 1659573--1659629 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
1659563 CACGGTTTCG
1659573 TTTTTTTTTCTAAATTTGT-TTGTT
1 TTTTTTTTTCT-AATTTGTGTTGTT
* **
1659597 TTTTTTTTTGTTTTTTGTGTTGTT
1 TTTTTTTTTCTAATTTGTGTTGTT
1659621 TTTTTTTTT
1 TTTTTTTTT
1659630 TTGCAATAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 5 0.17
24 24 0.83
ACGTcount: A:0.05, C:0.02, G:0.11, T:0.82
Consensus pattern (24 bp):
TTTTTTTTTCTAATTTGTGTTGTT
Found at i:1659608 original size:12 final size:12
Alignment explanation
Indices: 1659591--1659629 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
1659581 TCTAAATTTG
1659591 TTTGTTTTTTTT
1 TTTGTTTTTTTT
*
1659603 TTTGTTTTTTGT
1 TTTGTTTTTTTT
*
1659615 GTTGTTTTTTTT
1 TTTGTTTTTTTT
1659627 TTT
1 TTT
1659630 TTGCAATAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (12 bp):
TTTGTTTTTTTT
Done.