genome.fa.s570.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold570
Parameters: 2 7 7 80 10 50 1000
Length:  91831

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124--180	29	2.0	29	85	0	78	35	3	12	49	1.58
131--199	29	2.3	29	85	2	93	33	2	10	53	1.49
8701--8752	22	2.4	22	81	12	63	65	0	1	32	1.04
11106--11138	12	2.8	12	86	13	50	36	3	0	60	1.12
11466--11649	34	5.4	34	88	0	262	25	7	26	40	1.82
11951--12013	19	3.3	19	90	0	90	28	17	19	34	1.94
16079--16263	34	5.5	34	86	0	255	26	7	25	40	1.82
22128--22162	18	1.9	18	94	0	61	25	5	17	51	1.67
26377--26454	20	3.9	19	78	6	75	39	12	12	34	1.82
26377--26454	40	2.0	39	84	2	102	39	12	12	34	1.82
27009--28021	28	35.1	28	82	8	944	23	18	30	27	1.98
27014--28024	175	5.8	170	80	9	1021	23	18	30	27	1.97
27060--28022	432	2.2	427	85	5	1301	22	18	31	27	1.97
29267--29294	14	2.0	14	100	0	56	0	0	14	85	0.59
38967--39006	19	2.1	19	85	0	53	70	10	10	10	1.36
43264--43338	20	3.8	20	77	7	80	41	13	12	33	1.81
43261--43338	40	2.0	39	84	2	102	41	14	11	33	1.81
44946--44974	3	9.7	3	100	0	58	34	0	0	65	0.93
45773--45810	2	19.0	2	100	0	76	50	0	0	50	1.00
46742--46777	3	12.0	3	100	0	72	66	0	0	33	0.92
46941--46978	17	2.1	19	85	9	53	36	10	0	52	1.36
49400--49475	6	12.7	6	77	0	53	40	1	5	52	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49400--49481	12	6.8	12	74	0	65	41	1	6	51	1.34
49400--49481	18	4.6	18	75	0	74	41	1	6	51	1.34
49408--49487	42	1.9	42	92	0	133	41	1	7	50	1.39
49436--49487	18	2.9	18	79	0	59	44	0	5	50	1.26
50109--50148	2	20.5	2	84	5	55	45	2	2	50	1.28
52232--52281	26	2.0	25	88	4	73	58	6	2	34	1.34
55900--55968	26	2.7	26	84	4	86	44	2	0	52	1.16
55922--55986	26	2.6	24	77	15	69	49	1	0	49	1.10
57073--57471	167	2.4	167	82	3	455	32	9	8	48	1.67
57864--57893	16	1.9	15	93	6	51	76	0	10	13	1.01
58942--59373	164	2.6	164	83	2	555	37	12	9	39	1.77
72115--72257	41	3.5	41	77	5	153	22	31	13	32	1.93
72130--72262	42	3.2	40	75	13	117	24	30	13	31	1.93
72209--72476	85	3.2	85	80	5	242	20	29	14	35	1.93
72326--72471	43	3.4	43	68	11	120	19	30	17	32	1.94
72039--72598	170	3.3	170	75	5	402	20	30	15	33	1.93
72326--72741	85	4.9	85	78	5	322	18	32	15	33	1.92
72326--72758	170	2.5	171	78	5	396	18	33	15	33	1.92
72625--72746	42	2.9	41	75	9	129	18	36	12	32	1.88
73172--73196	13	1.9	13	100	0	50	32	16	16	36	1.90
73205--73333	52	2.5	52	94	0	231	34	16	17	31	1.92
77458--77818	163	2.2	165	80	3	406	31	8	9	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77788--77815	9	3.1	9	100	0	56	42	0	0	57	0.99
78477--78511	11	3.3	11	88	4	54	88	0	11	0	0.51
78478--78511	17	1.9	17	94	5	59	88	0	11	0	0.52
78477--78511	10	3.4	10	84	7	52	88	0	11	0	0.51
83785--83830	23	2.0	24	83	12	60	19	2	6	71	1.18
83904--83961	19	3.3	19	65	22	54	44	10	10	34	1.73
88457--88584	69	1.9	68	93	1	220	40	10	17	32	1.83
88581--88614	12	2.7	13	86	9	52	82	0	8	8	0.85
88712--88740	10	2.7	11	89	10	51	65	20	13	0	1.26
89719--89762	8	5.4	8	82	12	54	86	0	13	0	0.57
89722--89762	17	2.4	17	91	4	64	85	0	14	0	0.60
89722--89773	18	2.9	17	82	5	59	80	1	15	1	0.88

Tables:   1

The End!