Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold571
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20809
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Found at i:496 original size:13 final size:13
Alignment explanation
Indices: 478--502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
468 ATTCAACATT
478 TGTATCGATACAA
1 TGTATCGATACAA
491 TGTATCGATACA
1 TGTATCGATACA
503 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2460 original size:30 final size:31
Alignment explanation
Indices: 2423--2507 Score: 118
Period size: 30 Copynumber: 2.8 Consensus size: 31
2413 CAAATACCTT
2423 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
*
2454 -TCAAAGTCCACGACTCAGTGGCATTTTTTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
* * * *
2484 TTTAAAGCCCACAACTCCGTGGCA
1 TTCAAAGTCCACGACTCAGTGGCA
2508 CTCTTTTTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
30 29 0.60
31 19 0.40
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (31 bp):
TTCAAAGTCCACGACTCAGTGGCATTTTGTC
Found at i:2632 original size:35 final size:34
Alignment explanation
Indices: 2484--2957 Score: 462
Period size: 35 Copynumber: 14.4 Consensus size: 34
2474 GCATTTTTTC
*
2484 TTTAAAGCCCACAACTCCGTGGCA-C----TCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
2513 TTTAAAGCCCACAACTCCGTGGCA-C----TCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
2542 TTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCT
*
2577 TCT-AAGCCCACAACTCCGTGGCACCCTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCA-CCTTTTTCCT
* * *
2611 TTTAAAGCCCAGAACTTCGTGGCACTCTTTTT-TT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTTCCT
*
2645 CTTTAAAGCCCACAA-TCCGTGGCACCTTGTTCCT
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
2679 TTT-AAGTCCACAACTCCGTGGCA-------CCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
2705 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
2739 TTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
*
2774 TTTCAAAGCCCACAACTCCGTGGCA-CTTTTTCAT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
2808 CTTT-AAGTCCACAACTCCGTGGCACCTTCTT-CT
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
* *
2841 TTTCAAAGCCCACAACTCCGT-GCA-GTTTTTTCT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTTCCT
2874 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CCT
* * *
2910 TTT-AAGTCCACAACTCCGTGGCATCTTTCTCCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTT-TTCCT
2944 TTCTAAAGCCCACA
1 TT-TAAAGCCCACA
2958 CAAGTCGGTG
Statistics
Matches: 383, Mismatches: 29, Indels: 59
0.81 0.06 0.13
Matches are distributed among these distances:
26 6 0.02
27 19 0.05
29 52 0.14
31 1 0.00
32 33 0.09
33 48 0.13
34 83 0.22
35 128 0.33
36 13 0.03
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.32
Consensus pattern (34 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTTCCT
Found at i:2720 original size:27 final size:26
Alignment explanation
Indices: 2676--2732 Score: 96
Period size: 27 Copynumber: 2.2 Consensus size: 26
2666 GCACCTTGTT
*
2676 CCTTTTAAGTCCACAACTCCGTGGCA
1 CCTTTTAAGCCCACAACTCCGTGGCA
2702 CCTTTTAAAGCCCACAACTCCGTGGCA
1 CCTTTT-AAGCCCACAACTCCGTGGCA
2729 CCTT
1 CCTT
2733 CTTCTTTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.23, C:0.37, G:0.14, T:0.26
Consensus pattern (26 bp):
CCTTTTAAGCCCACAACTCCGTGGCA
Found at i:2729 original size:129 final size:132
Alignment explanation
Indices: 2454--2932 Score: 480
Period size: 129 Copynumber: 3.7 Consensus size: 132
2444 GCATTTTGTC
* * * *
2454 TCAAAGTCCACGACTCAGTGGCA--TTTTTTC-TTTAAAGCCCACAACTCCGTGGCACTC-----
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
* * * *
2511 TT-TTTAAAGCCCACAACTCCGTGGCAC-TCTT--T-TTAAAGCCCACAACTCTGTGGCACTCTT
66 TTCTTTAAAGCCCACAACTCCGTGGCACTTGTTCATCTTTAAGTCCACAACTCCGTGGCAC-C-T
*
2571 TTTCCT
129 CTT--T
* * *
2577 TCTAAGCCCACAACTCCGTGGCACCCTTTTTCCTTTTAAAGCCCAGAACTTCGTGGCACTCTTTT
1 TCAAAGCCCACAACTCCGTGGCA-CCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
*
2642 TTTCTTTAAAGCCCACAA-TCCGTGGCACCTTGTTCCT-TTTAAGTCCACAACTCCGTGGCA-C-
65 TTTCTTTAAAGCCCACAACTCCGTGGCA-CTTGTTCATCTTTAAGTCCACAACTCCGTGGCACCT
2703 CTTT
129 CTTT
* *
2707 T-AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTCAAAGCCCACAACTCCGTGGCAC-CTTCT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT-AAAGCCCACAACTCCGTGGCACTCTT-T
* *
2770 TCTTT-TTCAAAGCCCACAACTCCGTGGCACTTTTTCATCTTTAAGTCCACAACTCCGTGGCACC
64 T-TTTCTTTAAAGCCCACAACTCCGTGGCACTTGTTCATCTTTAAGTCCACAACTCCGTGGCA-C
2834 TTCTTCTTT
127 --C-TCTTT
* *
2843 TCAAAGCCCACAACTCCGT-GCA-GTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
** * *
2906 CCCTTTTAAGTCCACAACTCCGTGGCA
66 TTCTTTAAAGCCCACAACTCCGTGGCA
2933 TCTTTCTCCC
Statistics
Matches: 299, Mismatches: 29, Indels: 45
0.80 0.08 0.12
Matches are distributed among these distances:
123 19 0.06
126 6 0.02
127 25 0.08
128 14 0.05
129 62 0.21
130 37 0.12
132 13 0.04
133 16 0.05
134 50 0.17
135 11 0.04
136 29 0.10
137 17 0.06
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.32
Consensus pattern (132 bp):
TCAAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
TTCTTTAAAGCCCACAACTCCGTGGCACTTGTTCATCTTTAAGTCCACAACTCCGTGGCACCTCT
TT
Found at i:2784 original size:164 final size:162
Alignment explanation
Indices: 2477--2957 Score: 548
Period size: 163 Copynumber: 2.9 Consensus size: 162
2467 CTCAGTGGCA
*
2477 TTTTTTCTTTAAAGCCCACAACTCCGTGGCA-C-TCTT-TTTAAAGCCCACAACTCCGTGGCACT
1 TTTTTTCTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAGCCCACAACTCCGTGGCAC-
* * * *
2539 CTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTCT-AAGCCCACAACTCCGTGGCACCC
65 C-TTTTAAAGCCCACAACTCCGTGGCAC-CTTCTTCTTTTTCAAGCCCACAACTCCGTGGCACCC
* * *
2603 TTTTTCCTTTTAAAGCCCAGAACTTCGTGGCACTCT
128 TTCTTCCTTTTAAAGCCCACAACTCCGTGGCACT-T
* *
2639 TTTTTTCTTTAAAGCCCACAA-TCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCAC
1 TTTTTTCTTTAAAGCCCACAACTCCGTGGCACCTTCTT-CTTTTAAGCCCACAACTCCGTGGCAC
2703 CTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTCAAAGCCCACAACTCCGTGGCA-CCT
65 CTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTC-AAGCCCACAACTCCGTGGCACCCT
*
2767 TCTTCTTTTTCAAAGCCCACAACTCCGTGGCACTT
129 TCTTCCTTTT-AAAGCCCACAACTCCGTGGCACTT
** *
2802 TTTCATCTTT-AAGTCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGT-GCA
1 TTTTTTCTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTT--AAGCCCACAACTCCGTGGCA
* * * *
2865 GTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAGTCCACAACTCCGT
64 ------CCTTTTAAAGCCCACAACTCCGTGGCAC-CTTCTT-CTTTTTCAAGCCCACAACTCCGT
* * *
2929 GGCATCTTTCTCCCTTTCTAAAGCCCACA
121 GGCACCCTTCTTCCTTT-TAAAGCCCACA
2958 CAAGTCGGTG
Statistics
Matches: 276, Mismatches: 23, Indels: 32
0.83 0.07 0.10
Matches are distributed among these distances:
161 9 0.03
162 45 0.16
163 66 0.24
164 57 0.21
165 23 0.08
169 46 0.17
170 24 0.09
171 6 0.02
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.33
Consensus pattern (162 bp):
TTTTTTCTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAGCCCACAACTCCGTGGCACC
TTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTTCAAGCCCACAACTCCGTGGCACCCTTC
TTCCTTTTAAAGCCCACAACTCCGTGGCACTT
Found at i:2984 original size:32 final size:32
Alignment explanation
Indices: 2944--3133 Score: 243
Period size: 32 Copynumber: 6.1 Consensus size: 32
2934 CTTTCTCCCT
2944 TTCT-AAAGCCCACACAAGTCGGTGGCAACCC
1 TTCTCAAAGCCCACACAAGTCGGTGGCAACCC
2975 TTCTCAAAGCCCACACAAGTCGGTGGCAACCC
1 TTCTCAAAGCCCACACAAGTCGGTGGCAACCC
3007 TT-TCTAAAGCCCACACAAGTCGGTGGCAA-CC
1 TTCTC-AAAGCCCACACAAGTCGGTGGCAACCC
*
3038 TTCCTTCAAAGCCCACACAAGTC-GTGGCAACCT
1 TT-C-TCAAAGCCCACACAAGTCGGTGGCAACCC
* * *
3071 TTC-CAAAGCCCACACAAGTTGGTGACAACCA
1 TTCTCAAAGCCCACACAAGTCGGTGGCAACCC
*
3102 TTCTCTAAAG-CC-CACAA-TCGGTGGCGACCC
1 TTCTC-AAAGCCCACACAAGTCGGTGGCAACCC
3132 TT
1 TT
3134 TAAGTCCAAT
Statistics
Matches: 142, Mismatches: 8, Indels: 19
0.84 0.05 0.11
Matches are distributed among these distances:
30 27 0.19
31 26 0.18
32 64 0.45
33 23 0.16
34 2 0.01
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.19
Consensus pattern (32 bp):
TTCTCAAAGCCCACACAAGTCGGTGGCAACCC
Found at i:3014 original size:64 final size:64
Alignment explanation
Indices: 2940--3134 Score: 276
Period size: 64 Copynumber: 3.1 Consensus size: 64
2930 GCATCTTTCT
2940 CCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCAA
1 CCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCAA
3004 CCCTTTCTAAAGCCCACACAAGTCGGTGGCAA-CCTTCCTTCAAAGCCCACACAAGTC-GTGGCA
1 CCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTT-C-TCAAAGCCCACACAAGTCGGTGGCA
3067 A
64 A
* * * * *
3068 -CCTTTCCAAAGCCCACACAAGTTGGTGACAACCATTCTCTAAAG-CC-CACAA-TCGGTGGCGA
1 CCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTC-AAAGCCCACACAAGTCGGTGGCAA
3129 CCCTTT
1 CCCTTT
3135 AAGTCCAATA
Statistics
Matches: 120, Mismatches: 5, Indels: 14
0.86 0.04 0.10
Matches are distributed among these distances:
60 2 0.02
61 11 0.09
62 9 0.08
63 37 0.31
64 43 0.36
65 18 0.15
ACGTcount: A:0.28, C:0.35, G:0.17, T:0.19
Consensus pattern (64 bp):
CCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCAA
Found at i:3432 original size:97 final size:98
Alignment explanation
Indices: 3131--3556 Score: 536
Period size: 97 Copynumber: 4.4 Consensus size: 98
3121 GGTGGCGACC
* * * * * *
3131 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA-TGGCACCTTTATCTTTAAGTCCCAATGT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGT-CCAATAT
** *
3195 AGCTGGCCTTG-CGCAGCACATTGGCACC-TCA-
65 AGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
3226 CTTTTAAGGTCCAATGTAGCTGG-CTTGACTCAGCACATTGGCA-C--CA---TTAAGTCCAATA
1 C-TTTAA-GTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATA
*
3284 TAGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
64 TAGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
*
3319 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATGTGGCACCTTCATC-TTAAGTCCAATGT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT-TGGCACCTTCATCTTTAAGTCCAATAT
* * *
3383 AGCTGGCCTTGACTCAGCA-CTTGGCACCTTTAT
65 AGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
3416 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATA
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATA
*
3481 GCTGGCCTTGAATCAGCATATTGGCACCTTCAC
66 GCTGGCCTTGAATCAGCATATTGGCACCTTCAT
* * * * * *
3514 CTTTAAGTCCAGTGTGGCAGGCCTTGAATCTGCACAATGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCAC
3557 ACTGCAAGAC
Statistics
Matches: 292, Mismatches: 24, Indels: 27
0.85 0.07 0.08
Matches are distributed among these distances:
90 17 0.06
91 35 0.12
92 22 0.08
93 6 0.02
94 2 0.01
95 1 0.00
96 33 0.11
97 98 0.34
98 78 0.27
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (98 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATA
GCTGGCCTTGAATCAGCATATTGGCACCTTCAT
Found at i:3468 original size:146 final size:142
Alignment explanation
Indices: 3123--3556 Score: 569
Period size: 146 Copynumber: 3.0 Consensus size: 142
3113 CCACAATCGG
*
3123 TGGCGACC-CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA-TGGCACCTTTATCTTTAAG
1 TGGC-ACCACTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAG
* *
3186 TCCCAATGTAGCTGGCCTTG-CGCAGCACATTGGCACC-TCACTTTTAAGGTCCAATGTAGCTGG
65 T-CCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCA-TCTTAA-GTCCAATGTAGCTGG
3249 -CTTGACTCAGCACAT
127 CCTTGACTCAGCACAT
3264 TGGCACCA--TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGT
1 TGGCACCACTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGT
3327 CCAATGTAGCTGGCCTTGACTCAGCACATGTGGCACCTTCATCTTAAGTCCAATGTAGCTGGCCT
66 CCAATGTAGCTGGCCTTGACTCAGCACAT-TGGCACCTTCATCTTAAGTCCAATGTAGCTGGCCT
3392 TGACTCAGCAC-T
130 TGACTCAGCACAT
* * * *
3404 TGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTT
1 TGGCACC---A-CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTT
* * * * * * *
3469 AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCTTTAAGTCCAGTGTGGCAG
62 AAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATC-TTAAGTCCAATGTAGCTG
* * *
3534 GCCTTGAATCTGCACAA
126 GCCTTGACTCAGCACAT
3551 TGGCAC
1 TGGCAC
3557 ACTGCAAGAC
Statistics
Matches: 262, Mismatches: 17, Indels: 22
0.87 0.06 0.07
Matches are distributed among these distances:
139 51 0.19
140 55 0.21
141 29 0.11
142 3 0.01
143 1 0.00
145 12 0.05
146 105 0.40
147 6 0.02
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (142 bp):
TGGCACCACTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGT
CCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTAAGTCCAATGTAGCTGGCCTT
GACTCAGCACAT
Found at i:3541 original size:49 final size:49
Alignment explanation
Indices: 3131--3556 Score: 536
Period size: 49 Copynumber: 8.9 Consensus size: 49
3121 GGTGGCGACC
* * * * *
3131 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA-TGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
*
3179 CTTTAAGTCCCAATGTAGCTGGCCTTG-CGCAGCACATTGGCACC-TCA-
1 CTTTAAGT-CCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
3226 CTTTTAAGGTCCAATGTAGCTGG-CTTGACTCAGCACATTGGCA-C--CA-
1 C-TTTAA-GTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* * * *
3272 --TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
3319 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATGTGGCACCTTCAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACAT-TGGCACCTTCAT
*
3369 C-TTAAGTCCAATGTAGCTGGCCTTGACTCAGCAC-TTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
3416 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* * * *
3465 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* * * * * *
3514 CTTTAAGTCCAGTGTGGCAGGCCTTGAATCTGCACAATGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCAC
3557 ACTGCAAGAC
Statistics
Matches: 335, Mismatches: 28, Indels: 29
0.85 0.07 0.07
Matches are distributed among these distances:
42 14 0.04
43 22 0.07
44 1 0.00
46 3 0.01
47 18 0.05
48 82 0.24
49 183 0.55
50 12 0.04
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (49 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
Found at i:4213 original size:14 final size:15
Alignment explanation
Indices: 4194--4226 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
4184 TCCAAACACA
*
4194 AAAAAAAGAAAA-AG
1 AAAAAAACAAAACAG
4208 AAAAAAACAAAACAG
1 AAAAAAACAAAACAG
4223 AAAA
1 AAAA
4227 TCTCGGTGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAACAAAACAG
Found at i:5271 original size:30 final size:31
Alignment explanation
Indices: 5235--5292 Score: 109
Period size: 30 Copynumber: 1.9 Consensus size: 31
5225 AAATACCTTT
5235 TCAAAGTCCACGACTCAGT-GGCATTTTGTC
1 TCAAAGTCCACGACTCAGTGGGCATTTTGTC
5265 TCAAAGTCCACGACTCAGTGGGCATTTT
1 TCAAAGTCCACGACTCAGTGGGCATTTT
5293 TTCTTTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (31 bp):
TCAAAGTCCACGACTCAGTGGGCATTTTGTC
Found at i:5513 original size:33 final size:32
Alignment explanation
Indices: 5289--5750 Score: 325
Period size: 33 Copynumber: 14.1 Consensus size: 32
5279 TCAGTGGGCA
5289 TTTTTTCTTTAAAAGCCCAC-ACTCCGTGGCA-C
1 TTTTTTCTTT--AAGCCCACAACTCCGTGGCACC
* *
5321 -TCTTT-TTAAAGCCC-C-ACATCCGTGGCAACC
1 TTTTTTCTTTAAGCCCACAAC-TCCGTGGC-ACC
*
5351 TTCTTCTT-TTCAAAGCCCACAACTCCGTGGCA-C
1 TT-TT-TTCTT-TAAGCCCACAACTCCGTGGCACC
* * *
5384 -TCTTT-TTAAGAGCCCACAACTCTGTGGCACTC
1 TTTTTTCTTTA-AGCCCACAACTCCGTGGCAC-C
**
5416 TTTTCGCTTCTAAGCCCACAACTCCGTGGCACC
1 TTTTTTCTT-TAAGCCCACAACTCCGTGGCACC
* *
5449 TATTTTTCCTTTTAAAGCCCAGAACTTCGTGGCACTC
1 T-TTTTT-C-TTT-AAGCCCACAACTCCGTGGCAC-C
5486 TTTTTTCTTTAAGCCCACAACTCCGTGGCACC
1 TTTTTTCTTTAAGCCCACAACTCCGTGGCACC
* * *
5518 TTGTTCCTTTTAAGTCCACAACTCCGTGGCACC
1 TTTTTTC-TTTAAGCCCACAACTCCGTGGCACC
*
5551 ----TT-TTAAAGCCCACAACTCCGTGGCACC
1 TTTTTTCTTTAAGCCCACAACTCCGTGGCACC
* *
5578 TTCTTCTT-TTCAAAGCCCACAACTCCG-GGCACTT
1 TT-TT-TTCTT-TAAGCCCACAACTCCGTGGCAC-C
*
5612 TTTTTCATCTTTAAGTCCACAACTCCGTGGCACC
1 TTTTT--TCTTTAAGCCCACAACTCCGTGGCACC
*
5646 TTCTTCTT-TTCAAAGCCCA-AACTCCGTGGCA-C
1 TT-TT-TTCTT-TAAGCCCACAACTCCGTGGCACC
5678 TTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTC
1 TTTTTTC-TTT-AAGCCCACAACTCCGTGGCAC-C
* *
5713 TTTTTTCCCTTTTAAGTCCACAACTCCGTGGCATC
1 TTTTTT--C-TTTAAGCCCACAACTCCGTGGCACC
5748 TTT
1 TTT
5751 CTCCTTTTCG
Statistics
Matches: 355, Mismatches: 31, Indels: 85
0.75 0.07 0.18
Matches are distributed among these distances:
27 26 0.07
28 14 0.04
29 4 0.01
30 27 0.08
31 8 0.02
32 22 0.06
33 89 0.25
34 77 0.22
35 33 0.09
36 48 0.14
37 7 0.02
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (32 bp):
TTTTTTCTTTAAGCCCACAACTCCGTGGCACC
Found at i:5567 original size:27 final size:26
Alignment explanation
Indices: 5523--5579 Score: 96
Period size: 27 Copynumber: 2.2 Consensus size: 26
5513 GCACCTTGTT
*
5523 CCTTTTAAGTCCACAACTCCGTGGCA
1 CCTTTTAAGCCCACAACTCCGTGGCA
5549 CCTTTTAAAGCCCACAACTCCGTGGCA
1 CCTTTT-AAGCCCACAACTCCGTGGCA
5576 CCTT
1 CCTT
5580 CTTCTTTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.23, C:0.37, G:0.14, T:0.26
Consensus pattern (26 bp):
CCTTTTAAGCCCACAACTCCGTGGCA
Found at i:5634 original size:197 final size:194
Alignment explanation
Indices: 5356--5750 Score: 531
Period size: 197 Copynumber: 2.0 Consensus size: 194
5346 CAACCTTCTT
*
5356 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTAAGAGCCCACAACTCTGTGGCACTCTTTTC
1 CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTAAGAGCCCACAACTCCGTGGCACTCTTTTC
* *
5421 GCTTCTAAGCCCACAACTCCGTGGCACCTATTTTTCCTTTT-AAAGCCCAGAACTTCGTGGCACT
66 GCTTCTAAGCCCACAACTCCGTGGCACC--TTCTT-CTTTTCAAAGCCCA-AACTCCGTGGCACT
5485 CTTTTT-TCTTT-AAGCCCACAACTCCGTGGCAC-C-TTGTT-CCTTTTAAGTCCACAACTCCGT
127 -TTTTTCT-TTTAAAGCCCACAACTCCGTGGCACTCTTTGTTCCCTTTTAAGTCCACAACTCCGT
5545 GGCAC
190 GGCAC
5550 CTTTT-AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAA-AGCCCACAACTCCG-GGCACTT
1 CTTTTCAAAGCCCACAACTCCGTGGCA-C-TC-T-TTTT-AAGAGCCCACAACTCCGTGGCAC-T
* * *
5612 TTTTTCATCTT-TAAGTCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCAAACTCCGTGGC
60 CTTTTC-GCTTCTAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCAAACTCCGTGGC
*
5676 ACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTTAAGTCCACAACTCCG
124 ACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTGTTCCCTTTTAAGTCCACAACTCCG
*
5741 TGGCAT
189 TGGCAC
5747 CTTT
1 CTTT
5751 CTCCTTTTCG
Statistics
Matches: 180, Mismatches: 8, Indels: 23
0.85 0.04 0.11
Matches are distributed among these distances:
193 29 0.16
194 46 0.26
195 15 0.08
196 10 0.06
197 75 0.42
198 5 0.03
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (194 bp):
CTTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTAAGAGCCCACAACTCCGTGGCACTCTTTTC
GCTTCTAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCAAACTCCGTGGCACTTTTT
TCTTTTAAAGCCCACAACTCCGTGGCACTCTTTGTTCCCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:5642 original size:128 final size:128
Alignment explanation
Indices: 5363--5750 Score: 393
Period size: 128 Copynumber: 2.9 Consensus size: 128
5353 CTTCTTTTCA
*
5363 AAGCCCACAACTCCGTGGCA-C-TC-T-TTTTAAGAGCCCACAACTCTGTGGCACTCTTTTCGCT
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTAA-AGCCCA-AACTCCGTGGCACTC--TT---T
* * * *
5424 TCTAAGCCCACAACTCCGTGGCACCTATTTTTCCTTTTAAAGCCCAGAACTTCGTGGCACTCTTT
59 T-AAAGCCCACAACTCCGTGGCACC-ATTCTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTT
5489 TTTCTTT
122 TTTCTTT
* *
5496 AAGCCCACAACTCCGTGGCACCTTGTTCCTTTT-AAGTCCACAACTCCGTGGCAC-CTTTTAAAG
1 AAGCCCACAACTCCGTGGCACCTTCTT-CTTTTAAAGCCCA-AACTCCGTGGCACTCTTTTAAAG
*
5559 CCCACAACTCCGTGGCACC-TTCTT-CTTTTCAAAGCCCACAACTCCG-GGCACTTTTTTTCATC
64 CCCACAACTCCGTGGCACCATTCTTCCTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTT--TC
5621 TTT
126 TTT
*
5624 AAGTCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCAAACTCCGTGGCACTTTTTTCTTTT
1 AAGCCCACAACTCCGTGGCACCTTCTTCTTTT-AAAGCCCAAACTCCGTGGCAC-----TCTTTT
* * *
5689 AAAGCCCACAACTCCGTGGCACTCTTTTTTCCCTTTT-AAGTCCACAACTCCGTGGCA-TCTTT
60 AAAGCCCACAACTCCGTGGCAC-CATTCTT-CCTTTTAAAGCCCACAACTCCGTGGCACTCTTT
5751 CTCCTTTTCG
Statistics
Matches: 220, Mismatches: 14, Indels: 39
0.81 0.05 0.14
Matches are distributed among these distances:
126 16 0.07
127 23 0.10
128 43 0.20
129 28 0.13
130 2 0.01
133 22 0.10
134 28 0.13
135 3 0.01
136 41 0.19
137 5 0.02
138 9 0.04
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (128 bp):
AAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCAAACTCCGTGGCACTCTTTTAAAGCC
CACAACTCCGTGGCACCATTCTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCTTT
Found at i:5677 original size:68 final size:66
Alignment explanation
Indices: 5284--5710 Score: 370
Period size: 68 Copynumber: 6.6 Consensus size: 66
5274 ACGACTCAGT
*
5284 GGGCA-TTTTTTCTTTAAAAGCCCAC-ACTCCGTGGCA-C-TC-T-TTTT-AAAGCCC-C-ACAT
1 GGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAAC-T
5340 CC
65 CC
* *
5342 GTGGCAACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCA-C-TC-T-TTTT-AAGAGCCCACA
1 G-GGC-ACTTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAA-AGCCCACA
*
5402 ACTCT
62 ACTCC
* * *
5407 GTGGCACTCTTTTCGCTTCT-AAGCCCACAACTCCGTGGCACCTATTTTTCCTTTT-AAAGCCCA
1 G-GGCACT-TTTT-TCTTTTAAAGCCCACAACTCCGTGGCACC--TTCTT-CTTTTCAAAGCCCA
* *
5470 GAACTTC
60 CAACTCC
* *
5477 GTGGCACTCTTTTT-TCTTT-AAGCCCACAACTCCGTGGCACCTTGTTCCTTTT--AAGTCCACA
1 G-GGCACT-TTTTTCT-TTTAAAGCCCACAACTCCGTGGCACCTTCTT-CTTTTCAAAGCCCACA
5538 ACTCC
62 ACTCC
5543 GTGGCAC------CTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACT
1 G-GGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACT
5602 CC
65 CC
*
5604 GGGCACTTTTTTTCATCTTT-AAGTCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCA-AA
1 GGGCAC-TTTTTTC-T-TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAA
5667 CTCC
63 CTCC
5671 GTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC
1 G-GGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC
5711 TCTTTTTTCC
Statistics
Matches: 314, Mismatches: 22, Indels: 58
0.80 0.06 0.15
Matches are distributed among these distances:
58 1 0.00
59 11 0.04
60 33 0.11
61 22 0.07
62 9 0.03
63 21 0.07
64 27 0.09
65 15 0.05
66 45 0.14
67 25 0.08
68 48 0.15
69 28 0.09
70 23 0.07
71 6 0.02
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.32
Consensus pattern (66 bp):
GGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTC
C
Found at i:5719 original size:227 final size:230
Alignment explanation
Indices: 5305--5758 Score: 612
Period size: 227 Copynumber: 2.0 Consensus size: 230
5295 CTTTAAAAGC
5305 CCACACTCCGTGGCACTCTTTTTAAAGCCCCACATCCGTGGCAACCTTCTTCTTTTCAAAGCCCA
1 CCACACTCCGTGGCACTCTTTTTAAAGCCCCACATCCGTGGCAACCTTCTTCTTTTCAAAGCCCA
* *
5370 CAACTCCGTGGCACTCTTTTTAAGAGCCCACAACTCTGTGGCACTCTTTTCGCTTCTAAGCCCAC
66 CAACTCCGTGGCACTCTTTTTAAGAGCCCACAACTCCGTGGCACTCTTTTCGCTTCAAAGCCCAC
* *
5435 AACTCCGTGGCACCTATTTTTCCTTTTAAAGCCCAGAACTTCGTGGCACTCTTTTTT-C-TTTAA
131 AACTCCGTGGCACCTATTTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCTTTTAA
5498 GCCCACAACTCCGTGGCACCTTGT-TCCTTTTAAGT
196 GCCCACAACTCCGTGGCACCTT-TCTCCTTTTAAGT
5533 CCACAACTCCGTGGCAC-C-TTTTAAAG-CCCACAACTCCGTGGC-ACCTTCTTCTTTTCAAAGC
1 CCAC-ACTCCGTGGCACTCTTTTTAAAGCCCCAC-A-TCCGTGGCAACCTTCTTCTTTTCAAAGC
* * **
5594 CCACAACTCCG-GGCACTTTTTTTCATCTTTA-AGTCCACAACTCCGTGGCAC-CTTCTTCTTTT
63 CCACAACTCCGTGGCACTCTTTTT-A-----AGAGCCCACAACTCCGTGGCACTCTT-TTCGCTT
5656 CAAAGCCCA-AACTCCGTGGCA-CT-TTTTT-CTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
121 CAAAGCCCACAACTCCGTGGCACCTATTTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTT
* *
5717 TTCCCTTTTAAGTCCACAACTCCGTGGCATCTTTCTCCTTTT
186 TT-CCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCCTTTT
5759 CGAAAGCCCA
Statistics
Matches: 202, Mismatches: 10, Indels: 26
0.85 0.04 0.11
Matches are distributed among these distances:
226 16 0.08
227 73 0.36
228 18 0.09
229 16 0.08
230 47 0.23
231 31 0.15
232 1 0.00
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (230 bp):
CCACACTCCGTGGCACTCTTTTTAAAGCCCCACATCCGTGGCAACCTTCTTCTTTTCAAAGCCCA
CAACTCCGTGGCACTCTTTTTAAGAGCCCACAACTCCGTGGCACTCTTTTCGCTTCAAAGCCCAC
AACTCCGTGGCACCTATTTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCTTTTAA
GCCCACAACTCCGTGGCACCTTTCTCCTTTTAAGT
Found at i:5875 original size:33 final size:33
Alignment explanation
Indices: 5756--5939 Score: 217
Period size: 33 Copynumber: 5.8 Consensus size: 33
5746 TCTTTCTCCT
5756 TTTCGAAAGCCCACACAAGTCGGTGGCAACC--C
1 TTTC-AAAGCCCACACAAGTCGGTGGCAACCTTC
*
5788 TTCTCAAAG-CC-CACAAGTCGGTGGTAACC--C
1 TT-TCAAAGCCCACACAAGTCGGTGGCAACCTTC
5818 TTTCAAAG-CC-CACAAGTCGGTGGCAACCTTC
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCTTC
*
5849 TTTCAAAGCCCACACAAGTCGATGGCAACCTTC
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCTTC
* * *
5882 -TTCCAAGCCCACACAAGTTGGTGACAACCATTC
1 TTTCAAAGCCCACACAAGTCGGTGGCAACC-TTC
*
5915 TCT-AAAGCCCACACAAGTCGGTGGC
1 TTTCAAAGCCCACACAAGTCGGTGGC
5940 GACCCTTTAA
Statistics
Matches: 134, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
29 25 0.19
30 20 0.15
31 11 0.08
32 33 0.25
33 44 0.33
34 1 0.01
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.20
Consensus pattern (33 bp):
TTTCAAAGCCCACACAAGTCGGTGGCAACCTTC
Found at i:5892 original size:92 final size:99
Alignment explanation
Indices: 5756--5939 Score: 249
Period size: 92 Copynumber: 1.9 Consensus size: 99
5746 TCTTTCTCCT
* ** *
5756 TTTCGAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAG-CC-CACAAGTCGGTGGTAACCCT
1 TTTCGAAAGCCCACACAAGTCGATGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGACAACCAT
5819 T-TC-AAAG-CC-CACAAGTCGGTGGCAACCTTC
66 TCTCTAAAGCCCACACAAGTCGGTGGCAACCTTC
* *
5849 TTTC-AAAGCCCACACAAGTCGATGGCAA-CCTTCTTCCAAGCCCACACAAGTTGGTGACAACCA
1 TTTCGAAAGCCCACACAAGTCGATGGCAACCCTTC-TCAAAGCCCACACAAGTCGGTGACAACCA
5912 TTCTCTAAAGCCCACACAAGTCGGTGGC
65 TTCTCTAAAGCCCACACAAGTCGGTGGC
5940 GACCCTTTAA
Statistics
Matches: 78, Mismatches: 6, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
91 5 0.06
92 28 0.36
93 6 0.08
94 17 0.22
95 2 0.03
96 4 0.05
97 2 0.03
98 14 0.18
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.20
Consensus pattern (99 bp):
TTTCGAAAGCCCACACAAGTCGATGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGACAACCAT
TCTCTAAAGCCCACACAAGTCGGTGGCAACCTTC
Found at i:5910 original size:65 final size:64
Alignment explanation
Indices: 5756--5947 Score: 227
Period size: 65 Copynumber: 3.0 Consensus size: 64
5746 TCTTTCTCCT
*
5756 TTTCGAAAGCCCACACAAGTCGGTGGCAACC--CTTCTCAAAG-CC-CACAAGTCGGTGGTAACC
1 TTTC-AAAGCCCACACAAGTCGGTGGCAACCTTCTT-TCAAAGCCCACACAAGTCGGTGGCAACC
5817 C
64 C
* *
5818 TTTCAAAG-CC-CACAAGTCGGTGGCAACCTTCTTTCAAAGCCCACACAAGTCGATGGCAACCT
1 TTTCAAAGCCCACACAAGTCGGTGGCAACCTTCTTTCAAAGCCCACACAAGTCGGTGGCAACCC
* * * * *
5880 TCTTCCAAGCCCACACAAGTTGGTGACAACCATTCTCT-AAAGCCCACACAAGTCGGTGGCGACC
1 T-TTCAAAGCCCACACAAGTCGGTGGCAACC-TTCTTTCAAAGCCCACACAAGTCGGTGGCAACC
5944 C
64 C
5945 TTT
1 TTT
5948 AAGTCCAATA
Statistics
Matches: 112, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
59 18 0.16
60 8 0.07
61 9 0.08
62 21 0.19
63 6 0.05
64 4 0.04
65 41 0.37
66 5 0.04
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.20
Consensus pattern (64 bp):
TTTCAAAGCCCACACAAGTCGGTGGCAACCTTCTTTCAAAGCCCACACAAGTCGGTGGCAACCC
Found at i:6187 original size:49 final size:49
Alignment explanation
Indices: 5944--6462 Score: 735
Period size: 49 Copynumber: 10.9 Consensus size: 49
5934 GGTGGCGACC
* * * *
5944 CTTTAAGTCCAATATCGCTGGCCTTGAATCAG--CATTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
5991 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC-TCA-
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
6038 CTTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C--CA-
1 C-TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* * *
6084 --TTAAGTCCAATATAGCTGGCCTTGA-TCAG-ATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
6129 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
*
6178 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* *
6227 CTTTAAGTCCAATGTAGTTGCCCTTGACTCAGCACA-TGGCACCTTCAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
*
6275 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
6324 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* * * *
6373 CTTTAAGTCCAATATAGCTGGCCTTGA-TCA-CATATTAGCACCTTCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* * * * * *
6420 CTTTAAGTCCAGTGTGGCAGGCCTTGAATCTGCACAATGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCAC
6463 ACTGCAAGAC
Statistics
Matches: 428, Mismatches: 30, Indels: 26
0.88 0.06 0.05
Matches are distributed among these distances:
41 8 0.02
42 5 0.01
43 24 0.06
44 1 0.00
46 2 0.00
47 92 0.21
48 97 0.23
49 199 0.46
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (49 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
Found at i:6309 original size:97 final size:98
Alignment explanation
Indices: 5944--6462 Score: 744
Period size: 97 Copynumber: 5.4 Consensus size: 98
5934 GGTGGCGACC
* * * *
5944 CTTTAAGTCCAATATCGCTGGCCTTGAATCAG--CATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
*
6007 GCTGGCCTTGACTCAGCACATTGGCACC-TCA-
66 GCTGGCCTTGACTCAGCACATTGGCACCTTTAT
*
6038 CTTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA-C--CA---TTAAGTCCAATAT
1 C-TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
*
6097 AGCTGGCCTTGA-TCAG-ATATTGGCACCTTTAT
65 AGCTGGCCTTGACTCAGCACATTGGCACCTTTAT
6129 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
6194 GCTGGCCTTGACTCAGCACATTGGCACCTTTAT
66 GCTGGCCTTGACTCAGCACATTGGCACCTTTAT
* *
6227 CTTTAAGTCCAATGTAGTTGCCCTTGACTCAGCACA-TGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
6291 GCTGGCCTTGACTCAGCACATTGGCACCTTTAT
66 GCTGGCCTTGACTCAGCACATTGGCACCTTTAT
*
6324 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATA
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
* * * *
6389 GCTGGCCTTGA-TCA-CATATTAGCACCTTCAC
66 GCTGGCCTTGACTCAGCACATTGGCACCTTTAT
* * * * * *
6420 CTTTAAGTCCAGTGTGGCAGGCCTTGAATCTGCACAATGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCAC
6463 ACTGCAAGAC
Statistics
Matches: 387, Mismatches: 24, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
89 10 0.03
90 47 0.12
91 26 0.07
93 2 0.01
94 2 0.01
95 28 0.07
96 75 0.19
97 110 0.28
98 87 0.22
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (98 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGACTCAGCACATTGGCACCTTTAT
Found at i:6311 original size:146 final size:145
Alignment explanation
Indices: 5944--6462 Score: 765
Period size: 146 Copynumber: 3.6 Consensus size: 145
5934 GGTGGCGACC
* *
5944 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGC--ATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTG-ATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
6007 GCTGGCCTTGACTCAGCACATTGGCACC-TCA-CTTTTAAGTCCAATGTAGCTGGCCTTGACTCA
65 GCTGGCCTTGACTCAGCACATTGGCACCTTCATC-TTTAAGTCCAATGTAGCTGGCCTTGACTCA
6070 GCACATTGGCACC--A-
129 GCACATTGGCACCTTAT
*
6084 --TTAAGTCCAATATAGCTGGCCTTGATCAG-ATATTGGCACCTTTATCTTTAAGTCCAATGTAG
1 CTTTAAGTCCAATATAGCTGGCCTTGATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAG
6146 CTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGC
66 CTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGC
6211 ACATTGGCACCTTTAT
131 ACATTGGCACC-TTAT
* * * *
6227 CTTTAAGTCCAATGTAGTTGCCCTTGACTCAGCACA-TGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGA-TCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
6291 GCTGGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAG
65 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAG
6356 CACATTGGCACCTTCAT
130 CACATTGGCACCTT-AT
* * * *
6373 CTTTAAGTCCAATATAGCTGGCCTTGATCA-CATATTAGCACCTTCACCTTTAAGTCCAGTGTGG
1 CTTTAAGTCCAATATAGCTGGCCTTGATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAG
* * * *
6437 CAGGCCTTGAATCTGCACAATGGCAC
66 CTGGCCTTGACTCAGCACATTGGCAC
6463 ACTGCAAGAC
Statistics
Matches: 346, Mismatches: 19, Indels: 23
0.89 0.05 0.06
Matches are distributed among these distances:
137 5 0.01
138 81 0.23
139 46 0.13
140 1 0.00
142 1 0.00
144 3 0.01
145 74 0.21
146 133 0.38
147 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (145 bp):
CTTTAAGTCCAATATAGCTGGCCTTGATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAG
CTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGC
ACATTGGCACCTTAT
Found at i:7121 original size:15 final size:15
Alignment explanation
Indices: 7101--7134 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7091 TCCAAACACA
*
7101 AAAAAAAGAAAAAAG
1 AAAAAAACAAAAAAG
*
7116 AAAAAAACAAAACAG
1 AAAAAAACAAAAAAG
7131 AAAA
1 AAAA
7135 TCTCGGTGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.85, C:0.06, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAACAAAAAAG
Found at i:8180 original size:30 final size:30
Alignment explanation
Indices: 8143--8225 Score: 107
Period size: 29 Copynumber: 2.8 Consensus size: 30
8133 CAAATACCTT
8143 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
1 TTCAAAGTCCACGACTCAGTGGCATTTT-TC
8174 -TCAAAGT-CACGACTCAGTGGCATTTTTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTTC
* * * *
8202 TTTAAAGCCCACAACTCCGTGGCA
1 TTCAAAGTCCACGACTCAGTGGCA
8226 CTCTTTTTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
28 2 0.04
29 24 0.52
30 20 0.43
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (30 bp):
TTCAAAGTCCACGACTCAGTGGCATTTTTC
Found at i:8265 original size:34 final size:34
Alignment explanation
Indices: 8202--8677 Score: 428
Period size: 34 Copynumber: 14.4 Consensus size: 34
8192 GGCATTTTTC
8202 TTTAAAGCCCACAACTCCGTGGCA----C-TCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
8231 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
*
8265 TTCAAAGCCCACAACTCCGTGGCA----C-TCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
* * *
8294 TTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTCTTCTT
* * *
8329 TCT-AAGCCCACAACCTCCGTGGCACCCTTTTTCCT
1 TTTAAAGCCCACAA-CTCCGTGGCA-CCTTCTTCTT
* *
8364 TTTAAAGCCCAGAACTTCGTGGCACTCTT-TT-TT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTCTTCTT
* * *
8397 TCTTTAAGCCCACAACTCCGTGGCACCTTGTTCCT
1 T-TTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
*
8432 TTT-AAGTCCACAACTCCGTGGCA-C--C--C-T
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
8459 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
* * * *
8493 TTCAAAGCCCAACAACTCCGTGGCACTTTTTTCATC
1 TTTAAAGCCC-ACAACTCCGTGGCACCTTCTTC-TT
*
8529 TTT-AAGTCCACAACTCCGTGGCACCTTCTTC-T
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
* *
8561 TTTCAAGCCCACAACTCCGTGGCA-CTT-TT-TC
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
* *
8592 TTTAAAGCCCACAACTCCGTGGCAACTCTTTTTCCCT
1 TTTAAAGCCCACAACTCCGTGGC-AC-CTTCTT-CTT
* * *
8629 TTT-AAGTCCACAACTCCGTGGCAATCTTTCTCCTT
1 TTTAAAGCCCACAACTCCGTGGC-A-CCTTCTTCTT
8664 TTCTAAAGCCCACA
1 TT-TAAAGCCCACA
8678 CAAGTCGGTG
Statistics
Matches: 371, Mismatches: 38, Indels: 68
0.78 0.08 0.14
Matches are distributed among these distances:
27 4 0.01
28 20 0.05
29 51 0.14
30 1 0.00
31 25 0.07
32 8 0.02
33 45 0.12
34 98 0.26
35 70 0.19
36 37 0.10
37 12 0.03
ACGTcount: A:0.21, C:0.35, G:0.12, T:0.32
Consensus pattern (34 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTT
Found at i:8279 original size:63 final size:64
Alignment explanation
Indices: 8196--8624 Score: 440
Period size: 63 Copynumber: 6.6 Consensus size: 64
8186 CTCAGTGGCA
8196 TTTTTC-TTTAAAGCCCACAACTCCGTGGCA-C-TCTTTTTAAAGCCCACAACTCCGTGGCACC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACC
* *
8257 TTCTTCTTTTCAAAGCCCACAACTCCGTGGCA-C-TCTTTTTAAAGCCCACAACTCTGTGGCACT
1 TTTTTCTTTT-AAAGCCCACAACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCAC-
8320 C
64 C
* * * *
8321 TTTTTCCTTCT-AAGCCCACAACCTCCGTGGCACCCTTTTTCCTTTTAAAGCCCAGAACTTCGTG
1 TTTTT-CTTTTAAAGCCCACAA-CTCCGTGGCA-CC---TTCTTTTTAAAGCCCACAACTCCGTG
8385 GCACTC
60 GCAC-C
* * * *
8391 TTTTT-TTCTTTAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
1 TTTTTCTT-TTAAAGCCCACAACTCCGTGGCACCTTCTT--TTTAAAGCCCACAACTCCGTGGCA
8455 CC
63 CC
8457 -----CTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCAACAACTCCGTGGC
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTC-T-TTTT-AAAGCCC-ACAACTCCGTGGC
*
8517 ACT
62 ACC
* *
8520 TTTTTCATCTTT-AAGTCCACAACTCCGTGGCACCTTCTTCTTTTCAAGCCCACAACTCCGTGGC
1 TTTTTC-T-TTTAAAGCCCACAACTCCGTGGCACCTTC-T-TTTTAAAGCCCACAACTCCGTGGC
8584 A-C
62 ACC
*
8586 TTTTTC-TTTAAAGCCCACAACTCCGTGGCAAC-TCTTTTT
1 TTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTTTT
8625 CCCTTTTAAG
Statistics
Matches: 315, Mismatches: 25, Indels: 56
0.80 0.06 0.14
Matches are distributed among these distances:
61 38 0.12
62 12 0.04
63 81 0.26
64 35 0.11
65 7 0.02
66 8 0.03
67 35 0.11
68 11 0.03
69 43 0.14
70 45 0.14
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (64 bp):
TTTTTCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTTTTAAAGCCCACAACTCCGTGGCACC
Found at i:8486 original size:27 final size:27
Alignment explanation
Indices: 8399--8615 Score: 101
Period size: 33 Copynumber: 6.9 Consensus size: 27
8389 TCTTTTTTTC
8399 TTTAAGCCCACAACTCCGTGGCACCTTGTTCCT
1 TTTAAGCCCACAACTCCGTGGCA-C-----CCT
*
8432 TTTAAGTCCACAACTCCGTGGCACCCT
1 TTTAAGCCCACAACTCCGTGGCACCCT
8459 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCT
1 TTT-AAGCCCACAACTCCGTGGCA-C--C--CT
*
8492 TTTCAAAGCCCAACAACTCCGTGGCACTTTTTTCAT
1 TTT--AAGCCC-ACAACTCCGTGGCAC------CCT
*
8528 CTTTAAGTCCACAACTCCGTGGCACCTTCTTCT
1 -TTTAAGCCCACAACTCCGTGGCA-C--C--CT
*
8561 TTTCAAGCCCACAACTCCGTGGCACTTTTTCT
1 TTT-AAGCCCACAACTCCGTGGCAC----CCT
*
8593 TTAAAGCCCACAACTCCGTGGCA
1 TTTAAGCCCACAACTCCGTGGCA
8616 ACTCTTTTTC
Statistics
Matches: 157, Mismatches: 8, Indels: 40
0.77 0.04 0.20
Matches are distributed among these distances:
27 6 0.04
28 19 0.12
29 1 0.01
31 24 0.15
32 9 0.06
33 47 0.30
34 24 0.15
35 20 0.13
36 1 0.01
37 3 0.02
38 3 0.02
ACGTcount: A:0.22, C:0.35, G:0.13, T:0.30
Consensus pattern (27 bp):
TTTAAGCCCACAACTCCGTGGCACCCT
Found at i:8531 original size:130 final size:127
Alignment explanation
Indices: 8202--8651 Score: 488
Period size: 130 Copynumber: 3.4 Consensus size: 127
8192 GGCATTTTTC
* *
8202 TTTAAAGCCCACAACTCCGTGGCA-C-TC-T-TTTTAAAGCCCACAACTCCGTGGCACCTTCTTC
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTCCGTGGCACTTTTTTC
* *
8263 T-TTTCAAAGCCCACAACTCCGTGGCA-C-TCTT-TTTAAAGCCCACAACTCTGTGGCACTCTTT
66 TCTTT--AAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAGCCCACAACTCCGTGGCACTC--T
8324 T
127 T
* * * *
8325 TCCTTCTAAGCCCACAACCTCCGTGGCACCCTTTTTCCTTTTAAAGCCCAGAACTTCGTGGCACT
1 T--TT-AAAGCCCACAA-CTCCGTGGCA-CCTTCTT-CTTTTAAAGCCCACAACTCCGTGGCACT
* * *
8390 CTTTTTTTCTTTAAGCCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
60 -TTTTTCTCTTTAAGCCCACAACTCCGTGGCACCTTCTT-CTTTTAAGCCCACAACTCCGTGGCA
*
8455 C-CCT
123 CTCTT
8459 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCAACAACTCCGTGGCACTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTT-AAAGCCC-ACAACTCCGTGGCACTTTTT
* *
8524 TCATCTTTAAGTCCACAACTCCGTGGCACCTTCTTCTTTTCAAGCCCACAACTCCGTGGCACTTT
64 TC-TCTTTAAGCCCACAACTCCGTGGCACCTTCTTCTTTT-AAGCCCACAACTCCGTGGCAC-TC
8589 TT
126 TT
* *
8591 CTTTAAAGCCCACAACTCCGTGGCAACTCTTTTTCCCTTTT-AAGTCCACAACTCCGTGGCA
1 -TTTAAAGCCCACAACTCCGTGGC-AC-CTTCTT--CTTTTAAAGCCCACAACTCCGTGGCA
8652 ATCTTTCTCC
Statistics
Matches: 276, Mismatches: 24, Indels: 43
0.80 0.07 0.13
Matches are distributed among these distances:
123 1 0.00
125 2 0.01
126 10 0.04
127 10 0.04
128 5 0.02
129 24 0.09
130 75 0.27
131 11 0.04
132 3 0.01
133 67 0.24
134 24 0.09
135 16 0.06
136 1 0.00
137 27 0.10
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (127 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTCCGTGGCACTTTTTTC
TCTTTAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAGCCCACAACTCCGTGGCACTCTT
Found at i:8732 original size:64 final size:64
Alignment explanation
Indices: 8663--8860 Score: 265
Period size: 67 Copynumber: 3.0 Consensus size: 64
8653 TCTTTCTCCT
* *
8663 TTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACAGAAGTCGGTGACAACCC
1 TTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCC
8727 TTTCTAAAG-CCACACAAGTCGGTGGCAA-CCTTCTTTCAAAGCCCACACAAGTCGGTGGGCAAC
1 TTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTC--TCAAAGCCCACACAAGTCGGT-GGCAAC
*
8790 CT
63 CC
* * * * *
8792 TCTTCCAAAGCCCACACAAGTTGGTGACAACCATTCTCTAAAGCCCACACAAGTCGGTGGCGACC
1 T-TTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTC-AAAGCCCACACAAGTCGGTGGCAACC
8857 C
64 C
8858 TTT
1 TTT
8861 AAGTCCAATA
Statistics
Matches: 118, Mismatches: 9, Indels: 13
0.84 0.06 0.09
Matches are distributed among these distances:
62 5 0.04
63 19 0.16
64 29 0.25
65 9 0.08
66 16 0.14
67 36 0.31
68 4 0.03
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.20
Consensus pattern (64 bp):
TTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCCACACAAGTCGGTGGCAACCC
Found at i:8773 original size:33 final size:33
Alignment explanation
Indices: 8663--8852 Score: 239
Period size: 33 Copynumber: 5.8 Consensus size: 33
8653 TCTTTCTCCT
8663 TTTCTAAAGCCCACACAAGTCGGTGGCAACC--C
1 TTTC-AAAGCCCACACAAGTCGGTGGCAACCTTC
* *
8695 TTCTCAAAGCCCACAGAAGTCGGTGACAACC--C
1 TT-TCAAAGCCCACACAAGTCGGTGGCAACCTTC
8727 TTTCTAAAG-CCACACAAGTCGGTGGCAACCTTC
1 TTTC-AAAGCCCACACAAGTCGGTGGCAACCTTC
8760 TTTCAAAGCCCACACAAGTCGGTGGGCAACCTTC
1 TTTCAAAGCCCACACAAGTCGGT-GGCAACCTTC
* * *
8794 TTCCAAAGCCCACACAAGTTGGTGACAACCATTC
1 TTTCAAAGCCCACACAAGTCGGTGGCAACC-TTC
*
8828 TCT-AAAGCCCACACAAGTCGGTGGC
1 TTTCAAAGCCCACACAAGTCGGTGGC
8853 GACCCTTTAA
Statistics
Matches: 140, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
31 21 0.15
32 37 0.26
33 47 0.34
34 35 0.25
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (33 bp):
TTTCAAAGCCCACACAAGTCGGTGGCAACCTTC
Found at i:8929 original size:49 final size:49
Alignment explanation
Indices: 8857--9380 Score: 701
Period size: 49 Copynumber: 10.9 Consensus size: 49
8847 GGTGGCGACC
* * * * * *
8857 CTTTAAGTCCAATATCGCTGGCCTTTAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
8906 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC-TCA-
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* *
8953 CTTTTAAGTCCAATGTAGCGGGCCTTGACTCAGCACATTAGCA-C--CA-
1 C-TTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* * * *
8999 --TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
*
9046 CTTTAAGTCTAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* *
9095 CTTTAAGTCCAATGTAGCTTGCCTTGACTCAGCACATTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
9144 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
*
9193 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
9242 CTTT-AGTCCAATGTAGCTGGCCTTGACTCAGCAC-TTGGCACCTTCAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* * * * * *
9289 TTTTAAGT-CAATATAGCTGGCCTTGAATCAGCATATTAGCACCTTCAAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTC-AT
* * * * * *
9338 CTTTAAGTCCAGTGTGGCAGGCCTTGAATCTGCACAATGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCAC
9381 ACTGCAAAGA
Statistics
Matches: 423, Mismatches: 41, Indels: 21
0.87 0.08 0.04
Matches are distributed among these distances:
43 35 0.08
44 1 0.00
46 3 0.01
47 40 0.09
48 84 0.20
49 234 0.55
50 26 0.06
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
Found at i:11080 original size:30 final size:31
Alignment explanation
Indices: 11043--11127 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 31
11033 CAAATACCTT
11043 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
* *
11074 -TCAAAGTCTACGACTCAGTGGCATTTTTTC
1 TTCAAAGTCCACGACTCAGTGGCATTTTGTC
* * * *
11104 TTTAAAGCCCACAACTCCGTGGCA
1 TTCAAAGTCCACGACTCAGTGGCA
11128 CTCTTTTTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
30 28 0.61
31 18 0.39
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.31
Consensus pattern (31 bp):
TTCAAAGTCCACGACTCAGTGGCATTTTGTC
Found at i:11286 original size:35 final size:33
Alignment explanation
Indices: 11086--11622 Score: 488
Period size: 34 Copynumber: 16.3 Consensus size: 33
11076 AAAGTCTACG
* *
11086 ACTCAGTGGCA-TTTTTTC-TTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTCCTTTTAAAGCCCACA
*
11117 ACTCCGTGGCAC----TCTTTTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTCCTTTTAAAGCCCACA
*
11146 ACTCCGTGGCACCTTCTT-CTTTTCAAAGCCCACA
1 ACTCCGTGGCA-CTTTTTCCTTTT-AAAGCCCACA
* *
11180 ACTCCGTGACAC----TCTTTTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTCCTTTTAAAGCCCACA
* *
11209 ACTCTGTGGCACTCTTTTTCCTTCT-AAGCCCACA
1 ACTCCGTGGCA--CTTTTTCCTTTTAAAGCCCACA
*
11243 ACTCCGTGGCACCCTTTTTCCTTTTAAAGCCCAGA
1 ACTCCGTGGCA--CTTTTTCCTTTTAAAGCCCACA
* **
11278 ACTTCGTGGCACTCTTTTTTTCTTTAAAGCCCACA
1 ACTCCGTGGCACT-TTTTCCT-TTTAAAGCCCACA
* *
11313 ACTCCGTGGCACCTTGTTCCTTTT-AAGTCCACA
1 ACTCCGTGGCA-CTTTTTCCTTTTAAAGCCCACA
11346 ACTCCGTGGCAC-----CCTTTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTCCTTTTAAAGCCCACA
* *
11374 ACTCCGTGGCACTTCTT-CTTTCAAAGCCCACA
1 ACTCCGTGGCACTTTTTCCTTTTAAAGCCCACA
* *
11406 ACTCCGTGGCACCTTCTT-CTTTCAAAGCCCACA
1 ACTCCGTGGCA-CTTTTTCCTTTTAAAGCCCACA
* *
11439 ACTCCGTGGCACTTTTTTCATCTTT-AAGTCCACA
1 ACTCCGTGGCAC-TTTTTCCT-TTTAAAGCCCACA
* *
11473 ACTCTGTGGCACTTTTTTCTTTTCAAAGCCCACA
1 ACTCCGTGGCACTTTTTCCTTTT-AAAGCCCACA
* *
11507 ACTCCGTGGTACTTTTTTCTTTTAAAGCCCACA
1 ACTCCGTGGCACTTTTTCCTTTTAAAGCCCACA
*
11540 ACTCCGTGGCACTCTTTTTCCCTTTT-AAGTCCACA
1 ACTCCGTGGCA--CTTTTT-CCTTTTAAAGCCCACA
*
11575 ACTCCGTGGCATCTTTCTCCCTTTCTAAAGCCACACA
1 ACTCCGTGGCA-CTTT-TTCCTTT-TAAAGCC-CACA
* *
11612 AGTCGGTGGCA
1 ACTCCGTGGCA
11623 ACCCTTCTCA
Statistics
Matches: 426, Mismatches: 42, Indels: 70
0.79 0.08 0.13
Matches are distributed among these distances:
27 6 0.01
28 21 0.05
29 44 0.10
30 5 0.01
31 11 0.03
32 30 0.07
33 88 0.21
34 119 0.28
35 78 0.18
36 11 0.03
37 13 0.03
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.32
Consensus pattern (33 bp):
ACTCCGTGGCACTTTTTCCTTTTAAAGCCCACA
Found at i:11541 original size:194 final size:192
Alignment explanation
Indices: 11076--11557 Score: 581
Period size: 194 Copynumber: 2.5 Consensus size: 192
11066 ATTTTGTCTC
* * * *
11076 AAAGTCTACGACTCAGTGGCA-TTTTTTC-TTTAAAGCCCACAACTCCGTGGCAC--TCT-TTTT
1 AAAGTCCACAACTCTGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTTTTTCTTTT
11136 AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGACACTCTTTTTAA
66 AAAGCCCACAACTCCGTGGCA-C--C--CTTTTCAAAGCCCACAACTCCGTGACACTCTTTTTAA
* * * *
11201 AGCCCACAACTCTGTGGCACTCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCCTTTTTCCTT
126 AGCCCACAACTCCGTGGCACTCTTCTTCCTTCAAAGCCCACAACTCCGTGGCACCCTTTTTCATT
11266 TT
191 TT
* * * *
11268 AAAGCCCAGAACT-TCGTGGCACTCTTTTTTTCTTTAAAGCCCACAACTCCGTGGCACCTTGTTC
1 AAAGTCCACAACTCT-GTGGCACT-TTTTTCT-TTTAAAGCCCACAACTCCGTGGCA-CTT-TTT
* *
11332 CTTTT-AAGTCCACAACTCCGTGGCACCCTTTT-AAAGCCCACAACTCCGTGGCACTTCTTCTTT
61 CTTTTAAAGCCCACAACTCCGTGGCACCCTTTTCAAAGCCCACAACTCCGTGACAC-TCTT-TTT
* *
11395 CAAAGCCCACAACTCCGTGGCAC-CTTCTTCTTTCAAAGCCCACAACTCCGTGGCA-CTTTTTTC
124 -AAAGCCCACAACTCCGTGGCACTCTTCTTCCTTCAAAGCCCACAACTCCGTGGCACCCTTTTTC
11458 ATCTTT
188 AT-TTT
*
11464 -AAGTCCACAACTCTGTGGCACTTTTTTCTTTTCAAAGCCCACAACTCCGTGGTACTTTTTTCTT
1 AAAGTCCACAACTCTGTGGCACTTTTTTCTTTT-AAAGCCCACAACTCCGTGGCAC-TTTTTCTT
*
11528 TTAAAGCCCACAACTCCGTGGCACTCTTTT
64 TTAAAGCCCACAACTCCGTGGCACCCTTTT
11558 TCCCTTTTAA
Statistics
Matches: 249, Mismatches: 23, Indels: 34
0.81 0.08 0.11
Matches are distributed among these distances:
192 15 0.06
193 12 0.05
194 79 0.32
195 35 0.14
196 60 0.24
197 23 0.09
199 1 0.00
200 20 0.08
201 4 0.02
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.33
Consensus pattern (192 bp):
AAAGTCCACAACTCTGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTTTTTCTTTT
AAAGCCCACAACTCCGTGGCACCCTTTTCAAAGCCCACAACTCCGTGACACTCTTTTTAAAGCCC
ACAACTCCGTGGCACTCTTCTTCCTTCAAAGCCCACAACTCCGTGGCACCCTTTTTCATTTT
Found at i:11576 original size:229 final size:228
Alignment explanation
Indices: 11103--11585 Score: 703
Period size: 229 Copynumber: 2.1 Consensus size: 228
11093 GGCATTTTTT
* * *
11103 CTTTAAAGCCCACAACTCCGTGGCACTCTTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTT
1 CTTTTAAGTCCACAACTCCGTGGCACTCCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTT
*
11168 TCAAAGCCCACAACTCCGTGACACTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCTTC
66 TCAAAGCCCACAACTCCGTGACACTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
* * *
11233 TAAGCCCACAACTCCGTGGCACCCTTTTTCCTTTTAAAGCCCAGAACTTCGTGGCACTCTTTTTT
131 TAAGCCCACAACTCCGTGGCA-CCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
11298 TCTTTAAAGCCCACAACTCCGTGGCACCTTGTTC
195 TCTTTAAAGCCCACAACTCCGTGGCACCTTGTTC
11332 CTTTTAAGTCCACAACTCCGTGGCAC-CCTTTTAAAGCCCACAACTCCGTGGCA-CTTCTTC-TT
1 CTTTTAAGTCCACAACTCCGTGGCACTCCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTT
*
11394 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTCAAAGCCCACAACTCCGTGGCACT-TTTTTC
66 TCAAAGCCCACAACTCCGTGACA-C-TCTT-TTT-AAAGCCCACAACTCCGTGGCACTCTTTTTC
* * * *
11458 ATCTT-TAAGTCCACAACTCTGTGGCA-CTTTTTTCTTTTCAAAGCCCACAACTCCGTGGTACT-
127 --CTTCTAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT-AAAGCCCACAACTCCGTGGCACTC
*
11520 TTTTTCT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
189 TTTTTCTCTTTAAAGCCCACAACTCCGTGGCAC-CTTGTT-C
11561 CTTTTAAGTCCACAACTCCGTGGCA
1 CTTTTAAGTCCACAACTCCGTGGCA
11586 TCTTTCTCCC
Statistics
Matches: 232, Mismatches: 13, Indels: 18
0.88 0.05 0.07
Matches are distributed among these distances:
226 24 0.10
227 33 0.14
228 52 0.22
229 79 0.34
230 41 0.18
231 3 0.01
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (228 bp):
CTTTTAAGTCCACAACTCCGTGGCACTCCTTTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTT
TCAAAGCCCACAACTCCGTGACACTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
TAAGCCCACAACTCCGTGGCACCTTTTTCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCT
CTTTAAAGCCCACAACTCCGTGGCACCTTGTTC
Found at i:11706 original size:33 final size:33
Alignment explanation
Indices: 11595--11784 Score: 266
Period size: 33 Copynumber: 5.8 Consensus size: 33
11585 ATCTTTCTCC
11595 CTTTCTAAAG-CCACACAAGTCGGTGGCAACC--
1 CTTTC-AAAGCCCACACAAGTCGGTGGCAACCTT
11626 CTTCTCAAAGCCCACACAAGTCGGTGGCAACC--
1 CTT-TCAAAGCCCACACAAGTCGGTGGCAACCTT
11658 CTTTCTAAAGCCCACACAAGTCGGTGGCAACCTT
1 CTTTC-AAAGCCCACACAAGTCGGTGGCAACCTT
11692 CTTTCAAAGCCCACACAAGTCGGTGGCAACCTT
1 CTTTCAAAGCCCACACAAGTCGGTGGCAACCTT
* * *
11725 CTTCCAAAGCCCACACAAGTTGGTGACAACCATT
1 CTTTCAAAGCCCACACAAGTCGGTGGCAACC-TT
*
11759 CTCT-AAAGCCCACACAAGTCGGTGGC
1 CTTTCAAAGCCCACACAAGTCGGTGGC
11785 GACCCTTTAA
Statistics
Matches: 146, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
31 9 0.06
32 52 0.36
33 76 0.52
34 9 0.06
ACGTcount: A:0.28, C:0.34, G:0.18, T:0.19
Consensus pattern (33 bp):
CTTTCAAAGCCCACACAAGTCGGTGGCAACCTT
Found at i:11861 original size:49 final size:49
Alignment explanation
Indices: 11789--12267 Score: 668
Period size: 49 Copynumber: 9.9 Consensus size: 49
11779 GGTGGCGACC
* * * * *
11789 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
11838 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACC-TCA-
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
11885 CTTTTAAGTCCAATGTAAGCTGGCCTTGACTCAGCACATTGGCA-C--CA-
1 C-TTTAAGTCCAATGT-AGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* * * * *
11932 --TTAAGTCCAATATAGCTGGCCTTCAATCAGCATATTGGCACCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
11979 CTTTAAGTCCAATGTAGCTGGGCCTTGACTCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATGTAGCT-GGCCTTGACTCAGCACATTGGCACCTTCAT
12029 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* *
12078 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCATCTTTAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
12127 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* * * * *
12176 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTAGCACCTTCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
* * * * * *
12225 CTTTAAGTCCAGTGTGGCAGGCCTTGAATCTGCACAATGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCAC
12268 ACTGCAAGAC
Statistics
Matches: 389, Mismatches: 32, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
43 24 0.06
44 13 0.03
46 1 0.00
47 3 0.01
48 17 0.04
49 286 0.74
50 45 0.12
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (49 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCAT
Found at i:12889 original size:13 final size:13
Alignment explanation
Indices: 12871--12895 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12861 CATAAAATGT
12871 TGTATCGATACAA
1 TGTATCGATACAA
12884 TGTATCGATACA
1 TGTATCGATACA
12896 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:12893 original size:33 final size:33
Alignment explanation
Indices: 12851--12917 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
12841 TCAAACGATT
12851 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
12884 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
12917 T
1 T
12918 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:12980 original size:13 final size:13
Alignment explanation
Indices: 12962--12986 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12952 ATTACTCACA
12962 TGTATCGATACAT
1 TGTATCGATACAT
12975 TGTATCGATACA
1 TGTATCGATACA
12987 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:13102 original size:52 final size:53
Alignment explanation
Indices: 12995--13125 Score: 205
Period size: 52 Copynumber: 2.5 Consensus size: 53
12985 CACTGATCTT
*
12995 TGTATCGATACATGCAGGAAAATTTTGCCCAGATGTATCGATACATTTTATAA
1 TGTATCGATACATGCAGGAAAATTTTGCCCAGATGTATCGATACATATTATAA
*
13048 TGTATCGATACATGCAGGCAAA-TTTGCCCAGATGTATCGATACACTATTA-AA
1 TGTATCGATACATGCAGGAAAATTTTGCCCAGATGTATCGATACA-TATTATAA
13100 TGTATCGATACATGCA-GATAAATTTT
1 TGTATCGATACATGCAGGA-AAATTTT
13126 CATATTGGGA
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
51 1 0.01
52 43 0.60
53 28 0.39
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (53 bp):
TGTATCGATACATGCAGGAAAATTTTGCCCAGATGTATCGATACATATTATAA
Found at i:20038 original size:13 final size:13
Alignment explanation
Indices: 20020--20044 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20010 ACATTTGGTC
20020 ATGTATCGATACA
1 ATGTATCGATACA
20033 ATGTATCGATAC
1 ATGTATCGATAC
20045 TGTGCGATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:20630 original size:21 final size:21
Alignment explanation
Indices: 20604--20643 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
20594 CTTTTCTCTC
20604 CCCCTTAATCAAAA-AATTTCT
1 CCCCTTAAT-AAAATAATTTCT
20625 CCCCTTAATAAAATAATTT
1 CCCCTTAATAAAATAATTT
20644 AACAATTTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.40, C:0.25, G:0.00, T:0.35
Consensus pattern (21 bp):
CCCCTTAATAAAATAATTTCT
Done.