Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold572
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 32342
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Found at i:10395 original size:28 final size:28
Alignment explanation
Indices: 10334--10402 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
10324 CAATCTTCAA
**
10334 TAGAATCAAGAAAAGTGCCAATCCTTAG
1 TAGAATCAAGAAAAGTGCCAATCCCAAG
*
10362 -AGGAATCAGGACAAAGTG-CAATCCCAAG
1 TA-GAATCAAGA-AAAGTGCCAATCCCAAG
*
10390 TAGAATCATGAAA
1 TAGAATCAAGAAA
10403 CTTGTAATGG
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
27 3 0.09
28 24 0.71
29 7 0.21
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.17
Consensus pattern (28 bp):
TAGAATCAAGAAAAGTGCCAATCCCAAG
Found at i:11153 original size:32 final size:32
Alignment explanation
Indices: 11115--11361 Score: 377
Period size: 32 Copynumber: 7.7 Consensus size: 32
11105 GCTAGACATC
* ** *
11115 AAAGCCCATACAAGTTGGTGACAACCTTTTCA
1 AAAGCCCACACAAGTTGGTGGTAACCTTCTCA
*
11147 AAAGCCCACACAAGTTGGTGGTAACCTTTTCA
1 AAAGCCCACACAAGTTGGTGGTAACCTTCTCA
11179 AAAGCCCACACAAGTTGGTGGTAACCTTCTCA
1 AAAGCCCACACAAGTTGGTGGTAACCTTCTCA
11211 AAAGCCCACACAAGTTGGTGGTAACCTTCTCA
1 AAAGCCCACACAAGTTGGTGGTAACCTTCTCA
11243 AAAGCCCACACAAGTTGGTGGTAACCTTCTCA
1 AAAGCCCACACAAGTTGGTGGTAACCTTCTCA
*
11275 AAAGCCCATACAAGTTGGTGGTAACCTTCTCA
1 AAAGCCCACACAAGTTGGTGGTAACCTTCTCA
* * * *
11307 AAAGTCCATACAAGTTGGTGGCAATCTTCTCA
1 AAAGCCCACACAAGTTGGTGGTAACCTTCTCA
* * *
11339 ACAGCCCATACAAGTTGGCGGTA
1 AAAGCCCACACAAGTTGGTGGTA
11362 TCCTCTTCCA
Statistics
Matches: 203, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 203 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (32 bp):
AAAGCCCACACAAGTTGGTGGTAACCTTCTCA
Found at i:11647 original size:52 final size:52
Alignment explanation
Indices: 11586--11786 Score: 178
Period size: 52 Copynumber: 3.8 Consensus size: 52
11576 TTACCTTCAC
11586 CATCTCTAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCA-TCTTTGT
1 CATC-CTAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCATTCTTTGT
* * * * * *
11638 CATTCCTAAG-CCTAATGTCGTTGGCTTTGAATCAGCACACTGGCATTCTTT-T
1 CA-TCCTAAGTCC-AATATCGCTGGCCTTGAATAAGCATATTGGCATTCTTTGT
* * * * * *
11690 CATCTTCAAGTCTAATGTCACTGGCCATGAATCAGCATATTGGCATTCTTTG-
1 CATCCT-AAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCATTCTTTGT
* * *
11742 CATCTTTAAGCCCAATATTGCTGGCCTTGAATCAA-CATATTGGCA
1 CATC-CTAAGTCCAATATCGCTGGCCTTGAAT-AAGCATATTGGCA
11787 CCTTTATCAT
Statistics
Matches: 120, Mismatches: 21, Indels: 16
0.76 0.13 0.10
Matches are distributed among these distances:
51 5 0.04
52 104 0.87
53 11 0.09
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (52 bp):
CATCCTAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCATTCTTTGT
Found at i:11834 original size:113 final size:113
Alignment explanation
Indices: 11681--11975 Score: 335
Period size: 113 Copynumber: 2.6 Consensus size: 113
11671 AGCACACTGG
* *
11681 CATTCTTTTCATCTTCAAGTCTAATGTCACTGGCCATGAATCAGCATATTGGCA-TTCTT-TGCA
1 CATTCTTTTCATCTTCAAGTCAAATGTCACTGGCCATGAATCAGCACATTGGCACTT-TTAT-CA
*
11744 TCTTTAAGCCCAATATTGCTGGCCTTGAATCAACATATTGGCACCTTTAT
64 TCTTTAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTAT
* ** **
11794 CATTCTTCTCATCTTCAAGTCAAATGTCACTGGCTTTGAATTGGCACATTGGCACTTTTATCATC
1 CATTCTTTTCATCTTCAAGTCAAATGTCACTGGCCATGAATCAGCACATTGGCACTTTTATCATC
* * * *
11859 TTTAAGCCTAATATCGTTGGCTTTGAATCAGCATATTGGCACCTTTAT
66 TTTAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTAT
* * * * ** * * * * *
11907 C-TTTTTTTGCATCTTTAAGTCCAATGTCGCTAACCCTGAATTAGCACATTAGCACTCTTCTCAT
1 CATTCTTTT-CATCTTCAAGTCAAATGTCACTGGCCATGAATCAGCACATTGGCACTTTTATCAT
11971 CTTTA
65 CTTTA
11976 TCATCGTTAA
Statistics
Matches: 154, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
112 5 0.03
113 146 0.95
114 3 0.02
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.39
Consensus pattern (113 bp):
CATTCTTTTCATCTTCAAGTCAAATGTCACTGGCCATGAATCAGCACATTGGCACTTTTATCATC
TTTAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTTAT
Found at i:12599 original size:21 final size:20
Alignment explanation
Indices: 12569--12607 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
12559 TACATTTTTG
*
12569 TTCAAATGTATTAATACATT
1 TTCAAATGTATCAATACATT
12589 TTCAGAATGTATCAATACA
1 TTCA-AATGTATCAATACA
12608 AGGTCCTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (20 bp):
TTCAAATGTATCAATACATT
Found at i:16588 original size:56 final size:55
Alignment explanation
Indices: 16521--16659 Score: 149
Period size: 56 Copynumber: 2.5 Consensus size: 55
16511 GGAAAATGGC
*
16521 CTAAATGACATTAAAATGCATGAAATGACATAAAA-TCTCTAAGTTATGAAAAATGA
1 CTAAATGACATTAAAATGCATGAAATGACATAAAATTC-CTAAG-CATGAAAAATGA
* * * *
16577 CTAAATCACATTAAAAT--ATGTAAAATGTCATAAAGTTCCTAAGCATGGAAAATGA
1 CTAAATGACATTAAAATGCATG--AAATGACATAAAATTCCTAAGCATGAAAAATGA
*
16632 CTAAAATGACATAAAAATGCATGGAAAT
1 CT-AAATGACATTAAAATGCAT-GAAAT
16660 TGCAAAATGG
Statistics
Matches: 69, Mismatches: 7, Indels: 13
0.78 0.08 0.15
Matches are distributed among these distances:
54 3 0.04
55 12 0.17
56 45 0.65
57 6 0.09
58 2 0.03
59 1 0.01
ACGTcount: A:0.50, C:0.12, G:0.13, T:0.26
Consensus pattern (55 bp):
CTAAATGACATTAAAATGCATGAAATGACATAAAATTCCTAAGCATGAAAAATGA
Found at i:19608 original size:79 final size:79
Alignment explanation
Indices: 19525--19677 Score: 180
Period size: 79 Copynumber: 1.9 Consensus size: 79
19515 TCATTTATGT
* * * * *
19525 TTTTATTTCTAAAATACCAATTTTCCACCATCAAGGATACTCCAACCCCGTTATTTTTAAGGTGA
1 TTTTATTTCCAAAACACCAATTTTCCACAATCAAGGATACTCCAACCCCGCTATTTTTAAGGGGA
*
19590 TACTTCAACTCCGG
66 TACTCCAACTCCGG
*** ** * **
19604 TTTTATTTCCAAAACATTGATTTTCCACAATCGGGGATACTTCAACCTTGCTATTTTTAAGGGGA
1 TTTTATTTCCAAAACACCAATTTTCCACAATCAAGGATACTCCAACCCCGCTATTTTTAAGGGGA
19669 TACTCCAAC
66 TACTCCAAC
19678 CTCATTATTT
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
79 60 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.36
Consensus pattern (79 bp):
TTTTATTTCCAAAACACCAATTTTCCACAATCAAGGATACTCCAACCCCGCTATTTTTAAGGGGA
TACTCCAACTCCGG
Found at i:20083 original size:237 final size:233
Alignment explanation
Indices: 19666--20266 Score: 660
Period size: 237 Copynumber: 2.5 Consensus size: 233
19656 ATTTTTAAGG
* * * * * *
19666 GGATACTCCAA-CCTCATTATTTCCGAGAGGATACTCTAACCCCAATTATATTTCTAAAACATCG
1 GGATACTCCAACCCT-ATTATTTTCGAGGGGATACTCAAACCCCGATTTTATTTCTAAAACAT-T
* **
19730 ATTTCTCACAATCGAGGATACTTCAACCTCGTTA-TTTTCGAGGGAATACTCCAACTCTGATTTT
64 ATTT-TC-CAATCGAGGATAC-TCAACCCCGTTATTTTTAAAGGG-ATACTCCAACTCTGATTTT
* * *
19794 ATTTCTAAAACATCGATTTTCCACCATCAGAGATACTCCAACCTTGTTATTTTCGAAGGGATACT
125 ATTTCTAAAACATCGATTTTCCACAATCAGAGATACCCCAACCTTATTATTTTCGAAGGGATACT
* *
19859 CCAACCGCGATTTTATTTCTAAAACA-CTGATTTTCCACCATCGT-
190 CCAACCCCGATTTTATTTCTAAAACATC-GATTTTCCACAATC-TA
*
19903 GGATACTCCAACCCTGTTATTTTCGAGGGGATACTCAAACCCCGATTTTATTTCTAAAACATTAA
1 GGATACTCCAACCCTATTATTTTCGAGGGGATACTCAAACCCCGATTTTATTTCTAAAACATT-A
* * *
19968 TTTTCC-ATTGTCAGGGATACTCAAACCCCGTTATTTTTAAAGGGATACTCTAA-TCTCGGTTTT
65 TTTTCCAATCG--A-GGATACTC-AACCCCGTTATTTTTAAAGGGATACTCCAACTCT-GATTTT
* *
20031 ATTTCTAAAACATCGATTTTTCACAATC-GAGGATACCCCAACCTTATTATTTTTGAAGGGATAC
125 ATTTCTAAAACATCGATTTTCCACAATCAGA-GATACCCCAACCTTATTATTTTCGAAGGGATAC
* * * *
20095 TCTAACCCCGGTTTTATTTCTAAAACATCGATTTTTCATAATCTA
189 TCCAACCCCGATTTTATTTCTAAAACATCGATTTTCCACAATCTA
* * ** *
20140 GGATACTCCAACCCTATTATTTTCGAGGGGATACTCCAACCCTGGCTTTATTTCTGAAACACTTA
1 GGATACTCCAACCCTATTATTTTCGAGGGGATACTCAAACCCCGATTTTATTTCTAAAACA-TTA
* * * * * *
20205 TTTTCCACAATCGCGGATACTCTAACCCCATTATTTTCAAACGGATACTTCAAC-CTCATTTT
65 TTTT-C-CAATCGAGGATACTC-AACCCCGTTATTTTTAAAGGGATACTCCAACTCTGATTTT
20267 TATCTCGAAA
Statistics
Matches: 308, Mismatches: 40, Indels: 33
0.81 0.10 0.09
Matches are distributed among these distances:
234 3 0.01
235 1 0.00
236 15 0.05
237 270 0.88
238 15 0.05
239 1 0.00
240 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (233 bp):
GGATACTCCAACCCTATTATTTTCGAGGGGATACTCAAACCCCGATTTTATTTCTAAAACATTAT
TTTCCAATCGAGGATACTCAACCCCGTTATTTTTAAAGGGATACTCCAACTCTGATTTTATTTCT
AAAACATCGATTTTCCACAATCAGAGATACCCCAACCTTATTATTTTCGAAGGGATACTCCAACC
CCGATTTTATTTCTAAAACATCGATTTTCCACAATCTA
Found at i:20251 original size:79 final size:79
Alignment explanation
Indices: 19666--20259 Score: 553
Period size: 79 Copynumber: 7.5 Consensus size: 79
19656 ATTTTTAAGG
* * * ** *
19666 GGATACTCCAA-CCTCATTATTTCCG-AGAGGATACTCTAACCCCAATTATATTTCTAAAACATC
1 GGATACTCCAACCCT-GTTATTTTCGAAG-GGATACTCCAACCCTGATTTTATTTCTAAAACATC
19729 GA-TTTCTCACAATCGA
64 GATTTTC-CACAATCGA
* *
19745 GGATACTTCAA-CCTCGTTATTTTCG-AGGGAATACTCCAACTCTGATTTTATTTCTAAAACATC
1 GGATACTCCAACCCT-GTTATTTTCGAAGGG-ATACTCCAACCCTGATTTTATTTCTAAAACATC
*
19808 GATTTTCCACCATC-A
64 GATTTTCCACAATCGA
*
19823 GAGATACTCCAACCTTGTTATTTTCGAAGGGATACTCCAACCGC-GATTTTATTTCTAAAACA-C
1 G-GATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACC-CTGATTTTATTTCTAAAACATC
* *
19886 TGATTTTCCACCATCGT
64 -GATTTTCCACAATCGA
* * * **
19903 GGATACTCCAACCCTGTTATTTTCGAGGGGATACTCAAACCCCGATTTTATTTCTAAAACATTAA
1 GGATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACCCTGATTTTATTTCTAAAACATCGA
***
19968 TTTTCCATTGTC-A
66 TTTTCCACAATCGA
* * ** * * *
19981 GGGATACTCAAACCCCGTTATTTTTAAAGGGATACTCTAA-TCTCGGTTTTATTTCTAAAACATC
1 -GGATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACCCT-GATTTTATTTCTAAAACATC
*
20045 GATTTTTCACAATCGA
64 GATTTTCCACAATCGA
* * * * * * *
20061 GGATACCCCAACCTTATTATTTTTGAAGGGATACTCTAACCCCGGTTTTATTTCTAAAACATCGA
1 GGATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACCCTGATTTTATTTCTAAAACATCGA
* * *
20126 TTTTTCATAATCTA
66 TTTTCCACAATCGA
* * ** * *
20140 GGATACTCCAACCCTATTATTTTCGAGGGGATACTCCAACCCTGGCTTTATTTCTGAAACA-CTT
1 GGATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACCCTGATTTTATTTCTAAAACATC-G
*
20204 ATTTTCCACAATCGC
65 ATTTTCCACAATCGA
* ** * * *
20219 GGATACTCTAACCCCATTATTTTCAAACGGATACTTCAACC
1 GGATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACC
20260 TCATTTTTAT
Statistics
Matches: 434, Mismatches: 66, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
78 8 0.02
79 412 0.95
80 14 0.03
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (79 bp):
GGATACTCCAACCCTGTTATTTTCGAAGGGATACTCCAACCCTGATTTTATTTCTAAAACATCGA
TTTTCCACAATCGA
Found at i:22341 original size:4 final size:4
Alignment explanation
Indices: 22324--22353 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
22314 ATTGAGGTGC
*
22324 TTAT TTAT TCAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
22354 TGTTTTGTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (4 bp):
TTAT
Found at i:27387 original size:455 final size:455
Alignment explanation
Indices: 26536--27449 Score: 1828
Period size: 455 Copynumber: 2.0 Consensus size: 455
26526 GAAATGATTG
26536 TCAAGTTTATTGGCACATTACGGCCTCTATATTATGATGAAGTGGCAAGGAGATTTCTAAAGAGC
1 TCAAGTTTATTGGCACATTACGGCCTCTATATTATGATGAAGTGGCAAGGAGATTTCTAAAGAGC
26601 TTTGTAGATATGGTTGTGCTCTGGGGGATGATGGATGAAGCTCTAAAAAAGGAATCAAACAGAGG
66 TTTGTAGATATGGTTGTGCTCTGGGGGATGATGGATGAAGCTCTAAAAAAGGAATCAAACAGAGG
26666 TAGGAAGAAAGGAGAAGTTGAAAGGAAGCCACAGTCAAGAATCGATGTGGGAGCTAGTTCATCCC
131 TAGGAAGAAAGGAGAAGTTGAAAGGAAGCCACAGTCAAGAATCGATGTGGGAGCTAGTTCATCCC
26731 AAACTCGTACAGATCCAAAGCTAGAAAGGTTCATCACCAAACAAGATTGTGAGATTGCAAGGAAT
196 AAACTCGTACAGATCCAAAGCTAGAAAGGTTCATCACCAAACAAGATTGTGAGATTGCAAGGAAT
26796 GTCAAGGAACTTAGAGTACCAATGATTACAATCTGGTAGATCTTAGTAAGGGAAGAAAAACAAGT
261 GTCAAGGAACTTAGAGTACCAATGATTACAATCTGGTAGATCTTAGTAAGGGAAGAAAAACAAGT
26861 ATGAGTAGCCCACCGAATGTAAGGAATGTAAGAAAAACTACATTCACCCCAATAATCTAAGTTTT
326 ATGAGTAGCCCACCGAATGTAAGGAATGTAAGAAAAACTACATTCACCCCAATAATCTAAGTTTT
26926 GCTTTCGTAGTTCCAAGGAACTACTTTGTTGTCCTTGTAAAGGAAAAGGGATGGAGGTTGGATAA
391 GCTTTCGTAGTTCCAAGGAACTACTTTGTTGTCCTTGTAAAGGAAAAGGGATGGAGGTTGGATAA
26991 TCAAGTTTATTGGCACATTACGGCCTCTATATTATGATGAAGTGGCAAGGAGATTTCTAAAGAGC
1 TCAAGTTTATTGGCACATTACGGCCTCTATATTATGATGAAGTGGCAAGGAGATTTCTAAAGAGC
27056 TTTGTAGATATGGTTGTGCTCTGGGGGATGATGGATGAAGCTCTAAAAAAGGAATCAAACAGAGG
66 TTTGTAGATATGGTTGTGCTCTGGGGGATGATGGATGAAGCTCTAAAAAAGGAATCAAACAGAGG
27121 TAGGAAGAAAGGAGAAGTTGAAAGGAAGCCACAGTCAAGAATCGATGTGGGAGCTAGTTCATCCC
131 TAGGAAGAAAGGAGAAGTTGAAAGGAAGCCACAGTCAAGAATCGATGTGGGAGCTAGTTCATCCC
27186 AAACTCGTACAGATCCAAAGCTAGAAAGGTTCATCACCAAACAAGATTGTGAGATTGCAAGGAAT
196 AAACTCGTACAGATCCAAAGCTAGAAAGGTTCATCACCAAACAAGATTGTGAGATTGCAAGGAAT
27251 GTCAAGGAACTTAGAGTACCAATGATTACAATCTGGTAGATCTTAGTAAGGGAAGAAAAACAAGT
261 GTCAAGGAACTTAGAGTACCAATGATTACAATCTGGTAGATCTTAGTAAGGGAAGAAAAACAAGT
27316 ATGAGTAGCCCACCGAATGTAAGGAATGTAAGAAAAACTACATTCACCCCAATAATCTAAGTTTT
326 ATGAGTAGCCCACCGAATGTAAGGAATGTAAGAAAAACTACATTCACCCCAATAATCTAAGTTTT
27381 GCTTTCGTAGTTCCAAGGAACTACTTTGTTGTCCTTGTAAAGGAAAAGGGATGGAGGTTGGATAA
391 GCTTTCGTAGTTCCAAGGAACTACTTTGTTGTCCTTGTAAAGGAAAAGGGATGGAGGTTGGATAA
27446 TCAA
1 TCAA
27450 CTTGGGTATA
Statistics
Matches: 459, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
455 459 1.00
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (455 bp):
TCAAGTTTATTGGCACATTACGGCCTCTATATTATGATGAAGTGGCAAGGAGATTTCTAAAGAGC
TTTGTAGATATGGTTGTGCTCTGGGGGATGATGGATGAAGCTCTAAAAAAGGAATCAAACAGAGG
TAGGAAGAAAGGAGAAGTTGAAAGGAAGCCACAGTCAAGAATCGATGTGGGAGCTAGTTCATCCC
AAACTCGTACAGATCCAAAGCTAGAAAGGTTCATCACCAAACAAGATTGTGAGATTGCAAGGAAT
GTCAAGGAACTTAGAGTACCAATGATTACAATCTGGTAGATCTTAGTAAGGGAAGAAAAACAAGT
ATGAGTAGCCCACCGAATGTAAGGAATGTAAGAAAAACTACATTCACCCCAATAATCTAAGTTTT
GCTTTCGTAGTTCCAAGGAACTACTTTGTTGTCCTTGTAAAGGAAAAGGGATGGAGGTTGGATAA
Found at i:27546 original size:76 final size:76
Alignment explanation
Indices: 27420--27569 Score: 291
Period size: 76 Copynumber: 2.0 Consensus size: 76
27410 TGTCCTTGTA
27420 AAGGAAAAGGGATGGAGGTTGGATAATCAACTTGGGTATAGTCTGAGTAGGAGTAGCTTGAGCTC
1 AAGGAAAAGGGATGGAGGTTGGATAATCAACTTGGGTATAGTCTGAGTAGGAGTAGCTTGAGCTC
*
27485 ATGGTCGGTAC
66 ATAGTCGGTAC
27496 AAGGAAAAGGGATGGAGGTTGGATAATCAACTTGGGTATAGTCTGAGTAGGAGTAGCTTGAGCTC
1 AAGGAAAAGGGATGGAGGTTGGATAATCAACTTGGGTATAGTCTGAGTAGGAGTAGCTTGAGCTC
27561 ATAGTCGGT
66 ATAGTCGGT
27570 TATCAAACAA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.29, C:0.10, G:0.35, T:0.25
Consensus pattern (76 bp):
AAGGAAAAGGGATGGAGGTTGGATAATCAACTTGGGTATAGTCTGAGTAGGAGTAGCTTGAGCTC
ATAGTCGGTAC
Done.