genome.fa.s576.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold576
Parameters: 2 7 7 80 10 50 1000
Length:  32462

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2182--2322	52	2.7	52	90	2	221	31	17	17	33	1.94
2311--2335	13	1.9	13	100	0	50	36	16	16	32	1.90
2402--2426	13	1.9	13	100	0	50	32	16	16	36	1.90
2380--2446	33	2.0	33	88	0	98	40	13	11	34	1.81
2484--2525	21	2.0	21	90	0	66	35	14	14	35	1.86
3315--4123	49	16.8	49	85	4	1117	32	17	26	24	1.97
3247--4123	98	9.0	98	94	3	1424	32	17	26	24	1.96
4153--4217	33	1.9	34	96	3	123	16	18	36	27	1.93
4202--4721	33	15.3	34	78	14	463	32	12	33	20	1.91
4608--4659	27	1.9	27	96	0	95	21	17	38	23	1.93
4637--4754	30	3.8	31	84	4	121	31	16	28	22	1.96
5686--5716	16	1.9	16	93	0	53	0	6	6	87	0.68
12917--13057	52	2.7	52	90	2	221	31	17	17	33	1.94
13046--13070	13	1.9	13	100	0	50	36	16	16	32	1.90
13136--13160	13	1.9	13	100	0	50	32	16	16	36	1.90
13114--13180	33	2.0	33	88	0	98	40	13	11	34	1.81
13218--13259	21	2.0	21	90	0	66	35	14	14	35	1.86
15994--16067	20	3.8	19	80	1	85	39	14	12	33	1.84
19116--19169	21	2.6	22	82	11	69	37	14	18	29	1.91
19207--19232	13	2.0	13	100	0	52	38	15	15	30	1.88
21641--21691	19	2.6	20	87	3	68	25	15	15	43	1.86
23383--23407	12	2.1	12	100	0	50	44	0	32	24	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30510--30536	13	2.1	13	100	0	54	29	14	14	40	1.86
30603--30655	20	2.7	20	82	5	63	32	11	26	30	1.91
31469--31992	156	3.4	153	79	6	559	38	19	16	24	1.92

Tables:   1

The End!