Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold578
Parameters: 2 7 7 80 10 50 1000
Length:  72866

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6843--6880
2
19.0
2
88
0
58
44
2
0
52
1.14
16894--16954
2
32.5
2
84
12
85
52
1
0
45
1.10
20549--20588
19
2.0
20
90
4
64
67
0
0
32
0.91
21788--21881
29
3.2
29
81
4
100
37
3
4
55
1.36
21809--21885
14
5.3
14
71
11
57
35
1
5
58
1.29
21809--21885
29
2.6
29
89
2
109
35
1
5
58
1.29
22044--22087
21
2.0
22
86
4
63
43
0
0
56
0.99
22399--22472
22
3.1
24
79
13
82
36
0
0
63
0.95
24203--24312
29
3.8
28
77
9
112
39
8
0
51
1.38
24231--24315
30
2.9
29
84
8
100
36
7
1
55
1.35
24373--24406
17
2.0
17
100
0
68
58
0
11
29
1.33
24423--24447
12
2.1
12
100
0
50
52
0
0
48
1.00
24477--24525
22
2.3
21
83
13
64
40
0
0
59
0.98
24832--24907
40
1.9
40
84
10
102
34
0
0
65
0.93
24830--24927
49
2.0
49
84
4
126
36
1
1
61
1.10
26659--26747
44
2.0
44
100
0
178
29
2
17
50
1.58
27265--27321
29
2.0
29
86
6
80
54
1
7
36
1.38
28375--28424
24
2.0
26
84
7
68
42
0
2
56
1.11
28642--28707
29
2.3
29
82
12
75
39
1
0
59
1.07
28691--28755
32
2.0
33
82
8
80
43
1
0
55
1.09
28691--28755
33
2.0
33
82
8
80
43
1
0
55
1.09
29020--29107
5
18.8
5
72
19
66
36
1
1
61
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29027--29148
28
4.2
28
68
18
72
36
0
1
61
1.12
29225--29266
21
1.9
23
85
9
61
45
4
0
50
1.23
29608--29672
11
5.9
11
71
12
53
64
0
0
35
0.94
29614--29674
23
2.7
23
78
12
74
63
0
0
36
0.94
29635--29691
30
2.0
30
86
6
82
63
0
0
36
0.95
29684--29736
26
2.0
26
82
10
63
60
3
3
32
1.32
30151--30180
2
15.0
2
92
0
51
46
0
3
50
1.18
32075--32157
32
2.6
33
81
9
91
39
0
1
59
1.05
32162--32213
11
4.8
11
81
18
65
34
0
0
65
0.93
32112--32208
14
6.5
16
68
25
61
37
1
0
61
1.03
32042--32213
27
6.5
26
70
19
90
37
1
0
60
1.09
32258--32337
18
4.6
17
76
13
65
38
0
0
61
0.96
32289--32349
20
3.0
20
80
17
65
45
0
0
54
1.00
32288--32358
12
6.7
12
73
20
52
46
0
0
53
1.00
32629--32684
13
4.4
13
84
8
71
64
0
0
35
0.94
32629--32686
27
2.3
25
77
13
64
63
0
0
36
0.94
32637--32699
18
3.3
19
78
13
58
60
0
0
39
0.97
33720--33747
2
14.0
2
100
0
56
50
0
0
50
1.00
35378--35415
12
3.1
12
88
3
58
44
0
0
55
0.99
37920--37968
15
3.4
14
74
20
55
44
0
4
51
1.20
37913--37975
17
3.9
17
78
16
80
46
0
3
50
1.17
44179--44240
30
2.1
30
96
0
115
48
0
24
27
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44686--44727
10
3.9
11
85
14
61
69
0
0
30
0.89
44716--44775
18
3.6
18
68
25
58
53
0
0
46
1.00
44676--44785
32
3.4
33
80
10
122
57
0
0
41
1.05
48159--48194
7
5.4
7
96
3
58
41
0
0
58
0.98
48539--48565
3
9.0
3
100
0
54
33
0
0
66
0.92
49585--49622
6
6.3
6
93
0
58
50
10
0
39
1.37
49589--49650
2
31.5
2
80
3
72
48
4
3
43
1.40
50249--50365
58
2.0
60
83
5
148
40
5
6
47
1.52
50691--50724
2
17.0
2
93
0
59
52
0
0
47
1.00
51580--51675
47
2.2
45
79
18
114
46
0
4
48
1.21
51759--51809
20
2.6
19
78
6
57
47
0
0
52
1.00
51748--51875
40
3.1
41
73
12
104
42
2
0
55
1.12
54416--54460
19
2.4
19
81
7
56
48
2
0
48
1.13
60013--60111
37
2.7
37
87
3
128
34
25
19
21
1.96
64777--64859
37
2.2
37
89
4
123
30
22
21
25
1.99
64777--64874
37
2.6
36
84
9
108
32
24
19
23
1.97
66577--66609
17
1.9
17
93
0
57
57
0
9
33
1.30
67639--67705
18
3.9
17
80
7
73
64
0
1
34
1.03
67649--67705
6
9.7
6
81
7
64
63
0
1
35
1.05
68338--68370
14
2.3
15
89
5
50
63
0
0
36
0.95
68794--68845
27
1.9
27
88
0
77
51
1
1
44
1.23
69697--69739
2
21.5
2
95
0
77
48
2
0
48
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72166--72198
2
16.5
2
100
0
66
51
0
0
48
1.00

Tables:   1

The End!