genome.fa.s579.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold579
Parameters: 2 7 7 80 10 50 1000
Length:  21272

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1241--1557	29	10.7	29	77	9	223	28	28	16	27	1.97
1267--1579	56	5.3	56	70	13	189	29	28	15	25	1.96
1235--1405	86	2.0	86	86	2	236	28	29	17	24	1.97
1390--1480	33	2.7	34	76	8	96	19	29	13	37	1.90
1390--1463	35	2.2	35	82	4	98	21	31	10	36	1.88
1454--1579	28	4.4	28	84	6	146	36	26	16	19	1.93
1454--1605	28	5.3	29	82	8	138	36	27	15	19	1.93
1625--1921	52	5.9	51	85	4	390	24	24	18	32	1.97
1625--1993	156	2.4	153	81	8	380	25	25	16	32	1.96
2726--2750	13	1.9	13	100	0	50	32	16	16	36	1.90
2762--2887	52	2.4	52	98	0	243	36	18	17	27	1.93
6577--7710	62	18.5	61	84	5	1150	25	24	18	30	1.98
6574--7717	124	9.3	124	84	4	1272	25	25	18	30	1.98
6580--7717	186	6.2	186	84	4	1292	25	24	18	30	1.98
7720--8037	41	7.6	41	81	4	323	22	26	12	38	1.90
8664--8793	63	2.1	63	91	2	208	27	13	14	43	1.83
8669--8775	30	3.5	30	67	16	92	27	13	14	44	1.82
9685--9900	79	2.8	78	81	6	240	27	23	12	36	1.91
12094--12145	25	2.0	26	85	10	72	34	11	17	36	1.86
12072--12145	26	2.9	25	78	11	78	35	13	16	35	1.88
12073--12146	13	5.6	14	71	12	66	35	13	16	35	1.88
12156--12753	28	21.1	28	85	3	669	31	28	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12690--12791	32	3.2	32	78	2	98	30	25	16	27	1.97
13631--13707	21	3.8	20	84	5	91	40	15	11	32	1.84
13626--13707	41	2.0	40	86	6	112	39	17	10	32	1.84
13743--13810	19	3.9	19	78	21	85	35	11	14	38	1.83
13745--13807	32	2.0	32	96	0	117	34	12	15	36	1.86
13764--13788	13	1.9	13	100	0	50	36	16	16	32	1.90
15184--15225	21	2.0	21	100	0	84	52	9	19	19	1.72
16365--16437	27	2.7	27	87	6	94	23	34	21	20	1.97
16420--16590	51	3.3	51	79	4	198	29	26	11	32	1.92
16573--16654	28	2.9	28	80	7	87	24	30	17	28	1.97

Tables:   1

The End!