Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold58
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1582273
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.31
Warning! 125418 characters in sequence are not A, C, G, or T
File 6 of 10
Found at i:754132 original size:184 final size:184
Alignment explanation
Indices: 753799--754138 Score: 492
Period size: 185 Copynumber: 1.8 Consensus size: 184
753789 CAATTCTCCA
* * *
753799 CAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGTGATACT
1 CAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATACT
* *
753864 CTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGAGATACTCCAACCCCGTT
66 CCAACTCCGATTCTATTTCCAAAAAACACCAATTTCTTCACAATCGGAGATACTCCAACCCCGTT
753929 ATTTTCGAGGGGATACTCCAACCCCGGTTTTATCGCTAAAACACTAATTTTTCCT
131 ATTTTC-AGGGGATACTCCAACCCCGGTTTTATCGCTAAAACACTAATTTTTCCT
* * *
753984 CAATCGGGGATACTCCAA-TCCCGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGATA
1 CAATCGGGGATACTCCAACT-CCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGGATA
* * *
754048 TTCCAACTCCGATTCTATTTCC-AAAAATACCAATTT-TTCACAATC-GAGGATACTCCAACCTC
64 CTCCAACTCCGATTCTATTTCCAAAAAACACCAATTTCTTCACAATCGGA-GATACTCCAACCCC
754110 GTTA-TTTCATCGGGGATACTCCAACCCCG
128 GTTATTTTCA--GGGGATACTCCAACCCCG
754139 TTACTTCCGA
Statistics
Matches: 139, Mismatches: 11, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
182 1 0.01
183 6 0.04
184 45 0.32
185 55 0.40
186 32 0.23
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (184 bp):
CAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATACT
CCAACTCCGATTCTATTTCCAAAAAACACCAATTTCTTCACAATCGGAGATACTCCAACCCCGTT
ATTTTCAGGGGATACTCCAACCCCGGTTTTATCGCTAAAACACTAATTTTTCCT
Found at i:754152 original size:28 final size:28
Alignment explanation
Indices: 754095--754166 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 28
754085 TCACAATCGA
* * **
754095 GGATACTCCAACCTCGTTATTTCATCGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
*
754123 GGATACTCCAACCCCGTTACTTCCGAGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
* *
754151 GGACACTCCAATCCCG
1 GGATACTCCAACCCCG
754167 ATTTTTTTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.24
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTTCAGAGG
Found at i:757834 original size:104 final size:103
Alignment explanation
Indices: 757704--757901 Score: 281
Period size: 105 Copynumber: 1.9 Consensus size: 103
757694 AATATTTCAG
*
757704 TAGACACTAAATACTCAAAACCTAA-TTTTTCTCAAATTTATTCACTTATTAAAAATTTTTCAAA
1 TAGACACTAAATACTCAAAACCTAATTTTTTCTCAAATTTATTCACTTATTAAAAATTTTCCAAA
*
757768 CTACCAAAAGAAAAACCTCTAAATAGGAGTACAAAATCAA
66 CTACCAAAA-AAAAA-CTCTAAATAAGAGTACAAAATCAA
* * * * * *
757808 TAGAGACTAAATACTCCATACCTAATTTTTTTTCAAATTTATTCACTTGTTAATAATTTTCCAAA
1 TAGACACTAAATACTCAAAACCTAATTTTTTCTCAAATTTATTCACTTATTAAAAATTTTCCAAA
* *
757873 TTACTAAAAAAAAACTCTAAATAAGAGTA
66 CTACCAAAAAAAAACTCTAAATAAGAGTA
757902 GAAAGGCATT
Statistics
Matches: 83, Mismatches: 10, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
103 14 0.17
104 27 0.33
105 42 0.51
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (103 bp):
TAGACACTAAATACTCAAAACCTAATTTTTTCTCAAATTTATTCACTTATTAAAAATTTTCCAAA
CTACCAAAAAAAAACTCTAAATAAGAGTACAAAATCAA
Found at i:759313 original size:28 final size:28
Alignment explanation
Indices: 759267--759323 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
759257 ACCTATCTAC
*
759267 TTAACATGCTCTAAGTTGACCACACTAT
1 TTAACATGCTCTAAGTTGACAACACTAT
*
759295 TTAACATGCTCT-AGATTGACAACTCTAT
1 TTAACATGCTCTAAG-TTGACAACACTAT
759323 T
1 T
759324 CAAACTACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 2 0.08
28 24 0.92
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.35
Consensus pattern (28 bp):
TTAACATGCTCTAAGTTGACAACACTAT
Found at i:759560 original size:27 final size:28
Alignment explanation
Indices: 759507--759568 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
759497 AGGTCTATTG
*
759507 TTCTACTCAACTTGCTACAGATCGACCA
1 TTCTACTCAACTTGCTACAGATAGACCA
*
759535 TTCTACT-AACTTGTTACA-AGTAGACCA
1 TTCTACTCAACTTGCTACAGA-TAGACCA
*
759562 CTCTACT
1 TTCTACT
759569 TTACTTGATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 1 0.03
27 22 0.73
28 7 0.23
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (28 bp):
TTCTACTCAACTTGCTACAGATAGACCA
Found at i:763580 original size:60 final size:62
Alignment explanation
Indices: 763481--763602 Score: 185
Period size: 60 Copynumber: 2.0 Consensus size: 62
763471 AAGTTATTTG
* *
763481 AAATTAGCATACTCTTTATATTCTATTTTCTTTAGCTTTTT-TTTTTTG-AAATTTTTTTTT
1 AAATTAGCATACTCTTTATATTCTACTTTCTTTAGCTTTTTATTTTTTGAAAAGTTTTTTTT
* **
763541 AAATTAGCATACTTTTTATATTCTACTTTCTTTTTCTTTTTATTTTTTGAAAAGTTTTTTTT
1 AAATTAGCATACTCTTTATATTCTACTTTCTTTAGCTTTTTATTTTTTGAAAAGTTTTTTTT
763603 CACCTTTATG
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
60 37 0.67
61 7 0.13
62 11 0.20
ACGTcount: A:0.22, C:0.10, G:0.05, T:0.63
Consensus pattern (62 bp):
AAATTAGCATACTCTTTATATTCTACTTTCTTTAGCTTTTTATTTTTTGAAAAGTTTTTTTT
Found at i:765485 original size:43 final size:44
Alignment explanation
Indices: 765409--765495 Score: 117
Period size: 43 Copynumber: 2.0 Consensus size: 44
765399 TTGATAAGAT
*
765409 TAAAATAAAATAAAAATAAATATTAAGTAATTTAGTTAATTAAA
1 TAAAATAAAATAAAAATAAATATTAAGTAATTTAATTAATTAAA
*
765453 TAAAAT-AAATAAAAA-ATAATATTATA-TTATTTAATTAATTAAA
1 TAAAATAAAATAAAAATA-AATATTA-AGTAATTTAATTAATTAAA
765496 ATTATATTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
42 1 0.03
43 31 0.79
44 7 0.18
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (44 bp):
TAAAATAAAATAAAAATAAATATTAAGTAATTTAATTAATTAAA
Found at i:765496 original size:39 final size:43
Alignment explanation
Indices: 765407--765511 Score: 112
Period size: 39 Copynumber: 2.5 Consensus size: 43
765397 ATTTGATAAG
765407 ATTAAAATAAA-ATAAAAATAAATATTAAGTAATTTAGTTAATTA
1 ATTAAAATAAATA-AAAAAT-AATATTAAGTAATTTAGTTAATTA
* *
765451 AATAAAATAAATAAAAAATAATATT-A-T-A-TTATTTAATTA
1 ATTAAAATAAATAAAAAATAATATTAAGTAATTTAGTTAATTA
* *
765490 ATTAAAATTATATTAAAAATAA
1 ATTAAAA-TAAATAAAAAATAA
765512 ATAAGAAATA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
39 16 0.30
40 13 0.24
41 1 0.02
42 1 0.02
43 6 0.11
44 16 0.30
45 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (43 bp):
ATTAAAATAAATAAAAAATAATATTAAGTAATTTAGTTAATTA
Found at i:765871 original size:15 final size:15
Alignment explanation
Indices: 765851--765904 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
765841 AAATTATAAA
765851 TTAATATATATTATT
1 TTAATATATATTATT
*
765866 TTAATATATAAATTTTAT
1 TTAATATAT--ATTAT-T
* *
765884 TTACTATGTATTATT
1 TTAATATATATTATT
765899 TTAATA
1 TTAATA
765905 CATAATTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
15 15 0.48
16 4 0.13
17 4 0.13
18 8 0.26
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAATATATATTATT
Found at i:765900 original size:33 final size:33
Alignment explanation
Indices: 765832--765915 Score: 98
Period size: 33 Copynumber: 2.5 Consensus size: 33
765822 ATTAAATCTA
* *
765832 TTAAAATATAAATTATAAATTAATATATATTATT
1 TTAATATATAAATT-TTAATTAATATATATTATT
* * *
765866 TTAATATATAAATTTTATTTACTATGTATTATT
1 TTAATATATAAATTTTAATTAATATATATTATT
*
765899 TTAATACAT-AATTTTAA
1 TTAATATATAAATTTTAA
765916 ATAAAATTTG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
32 7 0.16
33 23 0.53
34 13 0.30
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.51
Consensus pattern (33 bp):
TTAATATATAAATTTTAATTAATATATATTATT
Found at i:765999 original size:19 final size:19
Alignment explanation
Indices: 765975--766022 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
765965 ATAATTAAAT
765975 ATATTTAATAAAATATTAA
1 ATATTTAATAAAATATTAA
*
765994 ATATTTAATAAAATATTTA
1 ATATTTAATAAAATATTAA
*
766013 ATATTAAATA
1 ATATTTAATA
766023 TTTAATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATATTTAATAAAATATTAA
Found at i:766007 original size:12 final size:13
Alignment explanation
Indices: 765986--766028 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 13
765976 TATTTAATAA
765986 AATATTAAATATTT
1 AATA-TAAATATTT
766000 AATA-AAATATTT
1 AATATAAATATTT
766012 AATATTAAATATTT
1 AATA-TAAATATTT
766026 AAT
1 AAT
766029 TTTTTCTTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 12 0.44
14 15 0.56
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AATATAAATATTT
Found at i:767461 original size:24 final size:24
Alignment explanation
Indices: 767431--767479 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
767421 TAAATTTTTA
* *
767431 AAAATTATGAATTTAAAAAAATTT
1 AAAATTAGGAATTCAAAAAAATTT
767455 AAAATTAGGAATTCAAAAAAATTT
1 AAAATTAGGAATTCAAAAAAATTT
767479 A
1 A
767480 GTTAATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (24 bp):
AAAATTAGGAATTCAAAAAAATTT
Found at i:768745 original size:50 final size:50
Alignment explanation
Indices: 768652--768877 Score: 253
Period size: 50 Copynumber: 4.5 Consensus size: 50
768642 AGATGCTTAG
* * * *
768652 AGTCAACAATTACGGTCACCTTTTTTCTATTATCAAAGGTTGGTGAAGAATT
1 AGTCAACAATTACGATCACC-TCTTTCGATTGTCAAAGGTTGGTGAAGAA-T
*
768704 A-TCAACAATTACGATCATCTCTTTCGATTGTCAAAGGTTGGT-AAGGAAT
1 AGTCAACAATTACGATCACCTCTTTCGATTGTCAAAGGTTGGTGAA-GAAT
* *
768753 AGTCAACAATTACG-GCTACCTCTCTCGATTGTCAAAGGTTGGTGAAGAAT
1 AGTCAACAATTACGATC-ACCTCTTTCGATTGTCAAAGGTTGGTGAAGAAT
* ** * *
768803 AGTCAATAATTACGGCCACCT-TCCTCGATTGTCAAAGATTGGTGAAGAAT
1 AGTCAACAATTACGATCACCTCT-TTCGATTGTCAAAGGTTGGTGAAGAAT
* *
768853 AGTCAACAATTACGACCACTTCTTT
1 AGTCAACAATTACGATCACCTCTTT
768878 TGCACCTATT
Statistics
Matches: 152, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
49 6 0.04
50 125 0.82
51 20 0.13
52 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31
Consensus pattern (50 bp):
AGTCAACAATTACGATCACCTCTTTCGATTGTCAAAGGTTGGTGAAGAAT
Found at i:773231 original size:50 final size:50
Alignment explanation
Indices: 773172--773336 Score: 204
Period size: 50 Copynumber: 3.3 Consensus size: 50
773162 AGATGCTTAG
* * * *
773172 AGTCAACAATTACGGTCTCCTTTCTCTATTGTCAAAGGTTGGTGATGAAT
1 AGTCAACAATTACGGTCACCTTTCTCGATTGTCAAAGGTTGATGAAGAAT
* *
773222 AGTCAACAATTACGGCCACCTCTCTCGATTGTCAAAGGTTGATGAAGAAT
1 AGTCAACAATTACGGTCACCTTTCTCGATTGTCAAAGGTTGATGAAGAAT
* ** * * *
773272 AGTTAACAATTACAATCACCTTTCTCGATTAGTCAAAAGTTGATAAAAAAT
1 AGTCAACAATTACGGTCACCTTTCTCGATT-GTCAAAGGTTGATGAAGAAT
*
773323 AGTTAACAATTACG
1 AGTCAACAATTACG
773337 ATCATTTTTT
Statistics
Matches: 99, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
50 69 0.70
51 30 0.30
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (50 bp):
AGTCAACAATTACGGTCACCTTTCTCGATTGTCAAAGGTTGATGAAGAAT
Found at i:773473 original size:2 final size:2
Alignment explanation
Indices: 773468--773506 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
773458 TATAAAATCA
773468 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
773507 AAGGAAGGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:774221 original size:21 final size:21
Alignment explanation
Indices: 774197--774237 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
774187 AAAGGAATTA
*
774197 AAAGTGAAATGCAGAAATTTC
1 AAAGTGAAAGGCAGAAATTTC
774218 AAAGTGAAAGGCAGAAATTT
1 AAAGTGAAAGGCAGAAATTT
774238 TAGAGGTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.49, C:0.07, G:0.22, T:0.22
Consensus pattern (21 bp):
AAAGTGAAAGGCAGAAATTTC
Found at i:774676 original size:17 final size:16
Alignment explanation
Indices: 774655--774692 Score: 58
Period size: 17 Copynumber: 2.3 Consensus size: 16
774645 TAAATATAAG
*
774655 TTTAAATAATTTAAAT
1 TTTAAATAAATTAAAT
774671 TATTAAATAAATTAAAT
1 T-TTAAATAAATTAAAT
774688 TTTAA
1 TTTAA
774693 TATTTTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTTAAATAAATTAAAT
Found at i:775449 original size:2 final size:2
Alignment explanation
Indices: 775437--775477 Score: 57
Period size: 2 Copynumber: 20.0 Consensus size: 2
775427 ATTTGTTGTG
775437 AT AT AT CAT AT AT AT AT AT AT AT AT AT AT AT A- AT AT CAT AT
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
775478 TATCATTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
1 1 0.03
2 31 0.86
3 4 0.11
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:783435 original size:20 final size:21
Alignment explanation
Indices: 783384--783435 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 21
783374 TTTATTTAAA
783384 AATTAAA-TTATTTATTTATTT
1 AATTAAATTTATTTA-TTATTT
*
783405 GA-TAAATTTTATTTA-TATTT
1 AATTAAA-TTTATTTATTATTT
783425 AATTAAATTTA
1 AATTAAATTTA
783436 AATATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
20 14 0.54
21 5 0.19
22 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
AATTAAATTTATTTATTATTT
Found at i:787916 original size:98 final size:98
Alignment explanation
Indices: 787689--788078 Score: 703
Period size: 98 Copynumber: 4.0 Consensus size: 98
787679 CCTATTTAAA
*
787689 TAACTAAATAGCTCTAAACAAGTTACCATCCTTTTCTAAACTATCAAAAGATAATAAGATCAAAA
1 TAACTAAATAGCTCTAAACAAGTTACCATCCTTTTCTAAACTATCAAAAGAAAATAAGATCAAAA
787754 CTGAAAGAGCAGTC--TCTCTTCCAGCATTCCT
66 CTGAAAGAGCAGTCTTTCTCTTCCAGCATTCCT
* *
787785 TAACTAAATAGCTTTAAACAAGTTACCATCCTTTTCCAAACTATCAAAAGAAAATAAGATCAAAA
1 TAACTAAATAGCTCTAAACAAGTTACCATCCTTTTCTAAACTATCAAAAGAAAATAAGATCAAAA
787850 CTGAAAGAGCAGTCTTTCTCTTCCAGCATTCCT
66 CTGAAAGAGCAGTCTTTCTCTTCCAGCATTCCT
*
787883 TAACTAAATAGCTCTAAACAAGTTACCATCCTTTTCTAAACTATCAAAAGAAAATAAGATCGAAA
1 TAACTAAATAGCTCTAAACAAGTTACCATCCTTTTCTAAACTATCAAAAGAAAATAAGATCAAAA
*
787948 CTGAAAGAGCAGTCTTTCTCTTCCAGCATTCCA
66 CTGAAAGAGCAGTCTTTCTCTTCCAGCATTCCT
* *
787981 TAACTAAATAGCTCTAAACAAGTTATCATCCTTTTCTAAACTATCAAAAGAAAATAAGATCAAAG
1 TAACTAAATAGCTCTAAACAAGTTACCATCCTTTTCTAAACTATCAAAAGAAAATAAGATCAAAA
788046 CTGAAAGAGCAGTCTTTCTCTTCCAGCATTCCT
66 CTGAAAGAGCAGTCTTTCTCTTCCAGCATTCCT
788079 CTCTCCTTTG
Statistics
Matches: 281, Mismatches: 11, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
96 76 0.27
98 205 0.73
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.28
Consensus pattern (98 bp):
TAACTAAATAGCTCTAAACAAGTTACCATCCTTTTCTAAACTATCAAAAGAAAATAAGATCAAAA
CTGAAAGAGCAGTCTTTCTCTTCCAGCATTCCT
Found at i:790338 original size:41 final size:42
Alignment explanation
Indices: 790273--790352 Score: 117
Period size: 41 Copynumber: 1.9 Consensus size: 42
790263 AACTTTTTAA
* *
790273 AATCATCTCTTTTTCAAATCGACATGATAATTCGACTATCAG
1 AATCATCTCTTTTCCAAATAGACATGATAATTCGACTATCAG
* *
790315 AATCATCT-TTTTCCAAATAGACATGATGATTCGGCTAT
1 AATCATCTCTTTTCCAAATAGACATGATAATTCGACTAT
790353 AAAAGGGAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
41 26 0.76
42 8 0.24
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (42 bp):
AATCATCTCTTTTCCAAATAGACATGATAATTCGACTATCAG
Found at i:798804 original size:20 final size:21
Alignment explanation
Indices: 798779--798819 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
798769 GAGGTGCTGG
798779 ACATAA-TAAAAATGCATGAA
1 ACATAACTAAAAATGCATGAA
*
798799 ACATAACTTAAAATGCATGAA
1 ACATAACTAAAAATGCATGAA
798820 TCATGGGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.56, C:0.12, G:0.10, T:0.22
Consensus pattern (21 bp):
ACATAACTAAAAATGCATGAA
Found at i:800023 original size:18 final size:17
Alignment explanation
Indices: 799992--800025 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
799982 CACTAGTCTT
*
799992 AAAGATGATGAAGATGA
1 AAAGATGATAAAGATGA
800009 AAAGAGTGATAAAGATG
1 AAAGA-TGATAAAGATG
800026 CCAATATGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.00, G:0.29, T:0.18
Consensus pattern (17 bp):
AAAGATGATAAAGATGA
Found at i:800101 original size:61 final size:61
Alignment explanation
Indices: 800002--800131 Score: 172
Period size: 61 Copynumber: 2.1 Consensus size: 61
799992 AAAGATGATG
* * * *
800002 AAGATGAAAAGAGTGATAAAGATGCCAATATGCTGATTCAGGGCCAGCGATATTGGGCTTA
1 AAGATGAAAAGAGTGATAAAGATGCCAATATGCCGATTCAAGGCCAGCGATATCGGACTTA
* * *
800063 AAGATGAGAAG-GATGATAAAGGTGCTAATATGCCGATTCAAGGCCAGCGATATCGGACTTA
1 AAGATGAAAAGAG-TGATAAAGATGCCAATATGCCGATTCAAGGCCAGCGATATCGGACTTA
*
800124 AAAATGAA
1 AAGATGAA
800132 GGTGCTAATG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 1 0.02
61 58 0.98
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (61 bp):
AAGATGAAAAGAGTGATAAAGATGCCAATATGCCGATTCAAGGCCAGCGATATCGGACTTA
Found at i:800153 original size:49 final size:49
Alignment explanation
Indices: 800081--800359 Score: 215
Period size: 49 Copynumber: 5.9 Consensus size: 49
800071 AAGGATGATA
* * * *
800081 AAGGTGCTAATATGCCGATTCAAGGCCAGCGATATCGGACTTAAAAATG
1 AAGGTGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATG
* * *
800130 AAGGTGCTAATGTGCTAATTCAAGGCTAGCGACATTGGACTTAAAGATG
1 AAGGTGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATG
* *
800179 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT----AGG
1 AAGGTGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATG
* * * * * *
800224 AATGT-C-AATATGTTGATTCAAGGTCAGCGATATTGGGCTT---AA-G
1 AAGGTGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATG
* * * ** * *
800267 AA--TGCCAATATGTTGATTCAAGGCCAGCGGTATCGGACTTAAAGATG
1 AAGGTGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATG
* * * * *
800314 ATGATGCCAATGTGCTG-TTCCAAGGCTAGCGATATTGGACTTAAAA
1 AAGGTGCTAATGTGCTGATT-CAAGGCCAGCGACATTGGACTTAAAA
800360 GAGTTACCAC
Statistics
Matches: 191, Mismatches: 29, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 62 0.32
44 2 0.01
45 6 0.03
46 1 0.01
47 2 0.01
48 2 0.01
49 114 0.60
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (49 bp):
AAGGTGCTAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAATG
Found at i:800402 original size:32 final size:32
Alignment explanation
Indices: 800366--800554 Score: 181
Period size: 32 Copynumber: 5.9 Consensus size: 32
800356 AAAAGAGTTA
800366 CCACCGACTTGTGTGGGCTTTAAGAAGGGTTG
1 CCACCGACTTGTGTGGGCTTTAAGAAGGGTTG
*
800398 CCACCGACTTGTATGGGCTTCT--GAAGAGGTTG
1 CCACCGACTTGTGTGGGCTT-TAAGAAG-GGTTG
*
800430 CCACCAACTTGTGTGGGCTTTGGAA-AA-GGTTG
1 CCACCGACTTGTGTGGGCTTT--AAGAAGGGTTG
* * *
800462 CCACCGACTTGCGTGGGCTTT-GGAAAGGGTTA
1 CCACCGACTTGTGTGGGCTTTAAG-AAGGGTTG
* * * ** *
800494 CTATCGACTTGTGTGGGCTTTAAAAAGGACTA
1 CCACCGACTTGTGTGGGCTTTAAGAAGGGTTG
*
800526 CCACCGACTTGTATGGGCTTTGAAGAAGG
1 CCACCGACTTGTGTGGGCTTT-AAGAAGG
800555 TTTCTCCATT
Statistics
Matches: 128, Mismatches: 18, Indels: 21
0.77 0.11 0.13
Matches are distributed among these distances:
31 7 0.05
32 112 0.88
33 7 0.05
34 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.28
Consensus pattern (32 bp):
CCACCGACTTGTGTGGGCTTTAAGAAGGGTTG
Found at i:800467 original size:64 final size:61
Alignment explanation
Indices: 800358--800556 Score: 222
Period size: 64 Copynumber: 3.1 Consensus size: 61
800348 TTGGACTTAA
800358 AAGA-GTTACCACCGACTTGTGTGGGCTTTAAGAAGGGTTGCCACCGACTTGTATGGGCTTCTG
1 AAGAGGTTACCACCGACTTGTGTGGGCTTTAA-AA-GGTTGCCACCGACTTGTATGGGCTT-TG
* * **
800421 AAGAGGTTGCCACCAACTTGTGTGGGCTTTGGAAAAGGTTGCCACCGACTTGCGTGGGCTTTGG
1 AAGAGGTTACCACCGACTTGTGTGGGCTTT--AAAAGGTTGCCACCGACTTGTATGGGCTTT-G
* * * *
800485 AA-AGGGTTACTATCGACTTGTGTGGGCTTTAAAAAGGACTACCACCGACTTGTATGGGCTTTG
1 AAGA-GGTTACCACCGACTTGTGTGGGCTTT-AAAAGG-TTGCCACCGACTTGTATGGGCTTTG
800548 AAGAAGGTT
1 AAG-AGGTT
800557 TCTCCATTAG
Statistics
Matches: 115, Mismatches: 13, Indels: 15
0.80 0.09 0.10
Matches are distributed among these distances:
63 15 0.13
64 95 0.83
65 3 0.03
66 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (61 bp):
AAGAGGTTACCACCGACTTGTGTGGGCTTTAAAAGGTTGCCACCGACTTGTATGGGCTTTG
Found at i:800490 original size:96 final size:95
Alignment explanation
Indices: 800356--800556 Score: 226
Period size: 96 Copynumber: 2.1 Consensus size: 95
800346 TATTGGACTT
* * *
800356 AAAAGAGTTACCACCGACTTGTGTGGGCTTTAAGAAGGGTTGCCACCGACTTGTATGGGCTTCTG
1 AAAAG-GTTACCACCGACTTGCGTGGGCTTTAAGAAGGGTTACCACCGACTTGTATGGGCTT-TA
* * * *
800421 AAGAGG-TTGCCACCAACTTGTGTGGGCTTTGG
64 AAAAGGACTACCACCAACTTGTATGGGCTTT-G
* * * * *
800453 AAAAGGTTGCCACCGACTTGCGTGGGCTTT-GGAAAGGGTTACTATCGACTTGTGTGGGCTTTAA
1 AAAAGGTTACCACCGACTTGCGTGGGCTTTAAG-AAGGGTTACCACCGACTTGTATGGGCTTTAA
*
800517 AAAGGACTACCACCGACTTGTATGGGCTTTG
65 AAAGGACTACCACCAACTTGTATGGGCTTTG
800548 AAGAAGGTT
1 AA-AAGGTT
800557 TCTCCATTAG
Statistics
Matches: 88, Mismatches: 13, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
95 10 0.11
96 73 0.83
97 5 0.06
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.28
Consensus pattern (95 bp):
AAAAGGTTACCACCGACTTGCGTGGGCTTTAAGAAGGGTTACCACCGACTTGTATGGGCTTTAAA
AAGGACTACCACCAACTTGTATGGGCTTTG
Found at i:800877 original size:67 final size:67
Alignment explanation
Indices: 800711--801133 Score: 310
Period size: 67 Copynumber: 6.5 Consensus size: 67
800701 TGTGGGCTTA
* * * * ** * * * *
800711 AAAAGAATAAGGTACCACGGAGTTATGGACTTTGAAGGAAAAGATGCTATGAAATTATGGGC-TT
1 AAAAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGATGCCATGGAATTGTAGGCTTT
800775 TG
66 TG
*
800777 AAAAG-AAAAGGTGCCATAGAGTTGTGGACTTAAAAGGAAAAGATGCCATGGAATTGTAGGCTTT
1 AAAAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGATGCCATGGAATTGTAGGCTTT
800841 TG
66 TG
* * * * **
800843 AAAAGAAAAAGGTGCCACGGAGTTGTAGATTTAAAAGGAAAAGATGCCA-CGAAGTTGTAGATTT
1 AAAAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGATGCCATGGAA-TTGTAGGCTT
800907 TTG
65 TTG
* *
800910 AAAAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGG----G-TGCCATAGAGTTGT-GGAC--
1 AAAAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGATGCCATGGAATTGTAGG-CTT
800967 TT-
65 TTG
* * * * * *
800969 AAAAGGAAAAA-ATACCACAGAGTTGTGGGCTTTGAAAA-GAAAAAAGGGCCATGGAGTTGT-GG
1 AAAA-GAAAAAGGTGCCACAGAGTTGTGGAC-TT-AAAAGGAAAAGA-TGCCATGGAATTGTAGG
801031 AC--TT-
62 -CTTTTG
* * * * *
801035 AAAAGGAACAAGGTGCCACAGAGTTGTGGACTTTGAAA-GAAAAGATGCCACGGAGTTGTGGGC-
1 AAAA-GAAAAAGGTGCCACAGAGTTGTGGAC-TTAAAAGGAAAAGATGCCATGGAATTGTAGGCT
801098 TTTG
64 TTTG
* * * * *
801102 AAAAGAAAGAGCTGCCTCAGAGTCGTGAACTT
1 AAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
801134 TGAAAAGAGA
Statistics
Matches: 294, Mismatches: 45, Indels: 37
0.78 0.12 0.10
Matches are distributed among these distances:
59 20 0.07
60 11 0.04
61 5 0.02
62 9 0.03
63 3 0.01
65 60 0.20
66 78 0.27
67 108 0.37
ACGTcount: A:0.38, C:0.11, G:0.29, T:0.22
Consensus pattern (67 bp):
AAAAGAAAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAGATGCCATGGAATTGTAGGCTTT
TG
Found at i:800946 original size:99 final size:97
Alignment explanation
Indices: 800843--801133 Score: 308
Period size: 99 Copynumber: 3.0 Consensus size: 97
800833 TAGGCTTTTG
* * ***
800843 AAAAGAAAAAGGTGCCACGGAGTTGTAGATTTAAAAGGAAAAGATGCCACGAAGTTGTAGATTTT
1 AAAAG-AAAAGGTGCCACAGAGTTGTGGATTTAAAAGGAAAAGATGCCACGAAGTTGT-GGGCTT
800908 TGAAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
64 TGAAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
* * * *
800942 AAAAG----GGTGCCATAGAGTTGTGGACTTAAAAGGAAAAAATACCAC-AGAGTTGTGGGCTTT
1 AAAAGAAAAGGTGCCACAGAGTTGTGGATTTAAAAGGAAAAGATGCCACGA-AGTTGTGGGCTTT
**
801002 GAAAAGAAAAAAGG-GCCATGGAGTTGTGGACTT
65 GAAAAG-AAAAAGGTGCCACAGAGTTGTGGACTT
* *
801035 AAAAGGAACAAGGTGCCACAGAGTTGTGGACTTTGAAA-GAAAAGATGCCACGGAGTTGTGGGCT
1 AAAA-GAA-AAGGTGCCACAGAGTTGTGGA-TTTAAAAGGAAAAGATGCCACGAAGTTGTGGGCT
* * * * *
801099 TTGAAAAGAAAGAGCTGCCTCAGAGTCGTGAACTT
63 TTGAAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
801134 TGAAAAGAGA
Statistics
Matches: 157, Mismatches: 24, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
93 32 0.20
94 48 0.31
98 5 0.03
99 67 0.43
100 5 0.03
ACGTcount: A:0.37, C:0.12, G:0.29, T:0.21
Consensus pattern (97 bp):
AAAAGAAAAGGTGCCACAGAGTTGTGGATTTAAAAGGAAAAGATGCCACGAAGTTGTGGGCTTTG
AAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
Found at i:800953 original size:27 final size:27
Alignment explanation
Indices: 800915--800974 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
800905 TTTTGAAAAG
*
800915 AAAAAGGTGCCACAGAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTT
*
800942 AAAAGGGTGCCATAGAGTTGTGGACTT
1 AAAAGGGTGCCACAGAGTTGTGGACTT
800969 AAAAGG
1 AAAAGG
800975 AAAAAATACC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.22
Consensus pattern (27 bp):
AAAAGGGTGCCACAGAGTTGTGGACTT
Found at i:800967 original size:161 final size:157
Alignment explanation
Indices: 800782--801095 Score: 418
Period size: 161 Copynumber: 2.0 Consensus size: 157
800772 CTTTGAAAAG
* * **
800782 AAAAGGTGCCATAGAGTTGTGGACTTAAAAGGAAAAGATGCCATGGAATTGTAGGCTTTTGAAAA
1 AAAAGGTGCCATAGAGTTGTGGACTTAAAAGGAAAAAATACCACAGAATTGTAGGC-TTTGAAAA
* *
800847 G-AAAAAGGTGCCACGGAGTTGTAGATTTAAAAGGAA-AAGATGCCAC-GAAGTTGTAGATTTTT
65 GAAAAAAGG-GCCACGGAGTTGTAGACTTAAAAGGAACAAGATGCCACAG-AGTTGTAGA-CTTT
*
800909 GAAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
127 G-AAAG-AAAAGATGCCACAGAGTTGTGGACTT
* *
800942 AAAAGGGTGCCATAGAGTTGTGGACTTAAAAGGAAAAAATACCACAGAGTTGTGGGCTTTGAAAA
1 AAAA-GGTGCCATAGAGTTGTGGACTTAAAAGGAAAAAATACCACAGAATTGTAGGCTTTGAAAA
* * * *
801007 GAAAAAAGGGCCATGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACAGAGTTGTGGACTTTGAA
65 GAAAAAAGGGCCACGGAGTTGTAGACTTAAAAGGAACAAGATGCCACAGAGTTGTAGACTTTGAA
*
801072 AGAAAAGATGCCACGGAGTTGTGG
130 AGAAAAGATGCCACAGAGTTGTGG
801096 GCTTTGAAAA
Statistics
Matches: 136, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
158 20 0.15
159 4 0.03
160 41 0.30
161 70 0.51
162 1 0.01
ACGTcount: A:0.38, C:0.11, G:0.30, T:0.22
Consensus pattern (157 bp):
AAAAGGTGCCATAGAGTTGTGGACTTAAAAGGAAAAAATACCACAGAATTGTAGGCTTTGAAAAG
AAAAAAGGGCCACGGAGTTGTAGACTTAAAAGGAACAAGATGCCACAGAGTTGTAGACTTTGAAA
GAAAAGATGCCACAGAGTTGTGGACTT
Found at i:801028 original size:66 final size:65
Alignment explanation
Indices: 800950--801095 Score: 195
Period size: 66 Copynumber: 2.2 Consensus size: 65
800940 TTAAAAGGGT
* *
800950 GCCATAGAGTTGTGGACTTAAAAGGAA-AAAATACCACAGAGTTGTGGGCTTTGAAAAGAAAAAA
1 GCCATGGAGTTGTGGACTTAAAAGGAACAAAATACCACAGAGTTGTGGACTTTG-AAAGAAAAAA
801014 GG
65 -G
** * * *
801016 GCCATGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACAGAGTTGTGGACTTTGAAAGAAAAGAT
1 GCCATGGAGTTGTGGACTTAAAAGGAACAAAATACCACAGAGTTGTGGACTTTGAAAGAAAAAAG
*
801081 GCCACGGAGTTGTGG
1 GCCATGGAGTTGTGG
801096 GCTTTGAAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
65 14 0.20
66 35 0.49
67 22 0.31
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.21
Consensus pattern (65 bp):
GCCATGGAGTTGTGGACTTAAAAGGAACAAAATACCACAGAGTTGTGGACTTTGAAAGAAAAAAG
Found at i:801137 original size:34 final size:33
Alignment explanation
Indices: 800697--801198 Score: 280
Period size: 32 Copynumber: 15.4 Consensus size: 33
800687 AAGTGTCATG
* * * * *
800697 GAGTTGTGGGC-TTAAAAAGAATAAGGTACCACG
1 GAGTTGTGGACTTTGAAAAGAA-AAGATGCCACA
* * * *
800730 GAGTTATGGACTTTG-AAGGAAAAGATGCTA-T
1 GAGTTGTGGACTTTGAAAAGAAAAGATGCCACA
* * * * *
800761 GAAATTATGGGCTTTGAAAAGAAAAGGTGCCATA
1 G-AGTTGTGGACTTTGAAAAGAAAAGATGCCACA
**
800795 GAGTTGTGGAC-TT-AAAAGGAAAAGATGCCATG
1 GAGTTGTGGACTTTGAAAA-GAAAAGATGCCACA
* * *
800827 GAATTGTAGG-CTTTTGAAAAGAAAAAGGTGCCACG
1 GAGTTGT-GGAC-TTTGAAAAG-AAAAGATGCCACA
*
800862 GAGTTGTAGA-TTT-AAAAGGAAAAGATGCCAC-
1 GAGTTGTGGACTTTGAAAA-GAAAAGATGCCACA
* * *
800893 GAAGTTGTAGATTTTTGAAAAGAAAAAGGTGCCACA
1 G-AGTTGTGGA-CTTTGAAAAG-AAAAGATGCCACA
* *
800929 GAGTTGTGGAC-TT-AAAAG----GGTGCCATA
1 GAGTTGTGGACTTTGAAAAGAAAAGATGCCACA
* *
800956 GAGTTGTGGAC-TT-AAAAGGAAAAAATACCACA
1 GAGTTGTGGACTTTGAAAA-GAAAAGATGCCACA
* * * **
800988 GAGTTGTGGGCTTTGAAAAGAAAAAAGGGCCATG
1 GAGTTGTGGACTTTGAAAAGAAAAGA-TGCCACA
*
801022 GAGTTGTGGAC-TT-AAAAGGAACAAGGTGCCACA
1 GAGTTGTGGACTTTGAAAA-GAA-AAGATGCCACA
*
801055 GAGTTGTGGACTTTG-AAAGAAAAGATGCCACG
1 GAGTTGTGGACTTTGAAAAGAAAAGATGCCACA
* * *
801087 GAGTTGTGGGCTTTGAAAAGAAAGAGCTGCCTCA
1 GAGTTGTGGACTTTGAAAAGAAA-AGATGCCACA
* * *
801121 GAGTCGTGAACTTTGAAAAG---AGATGCCACT
1 GAGTTGTGGACTTTGAAAAGAAAAGATGCCACA
*
801151 GAGTCGTGGACTTTGGGAGAAA-AAAAGATGCCACTA
1 GAGTTGTGGACTTT--GA-AAAGAAAAGATGCCAC-A
*
801187 -AGTCGTGGACTT
1 GAGTTGTGGACTT
801199 GGAAGAAAAA
Statistics
Matches: 372, Mismatches: 58, Indels: 76
0.74 0.11 0.15
Matches are distributed among these distances:
27 25 0.07
28 1 0.00
30 20 0.05
31 6 0.02
32 112 0.30
33 83 0.22
34 59 0.16
35 65 0.17
36 1 0.00
ACGTcount: A:0.36, C:0.12, G:0.29, T:0.23
Consensus pattern (33 bp):
GAGTTGTGGACTTTGAAAAGAAAAGATGCCACA
Found at i:801181 original size:35 final size:34
Alignment explanation
Indices: 801048--801238 Score: 139
Period size: 35 Copynumber: 5.8 Consensus size: 34
801038 AGGAACAAGG
* * *
801048 TGCCACAGAGTTGTGGACTTT-GAA-AGAAAAGA
1 TGCCACTGAGTCGTGGACTTTGGAAGAAAAAAGA
* * * *
801080 TGCCACGGAGTTGTGGGCTTT-GAA-AAGAAAGAGC
1 TGCCACTGAGTCGTGGACTTTGGAAGAA-AAA-AGA
* * * *
801114 TGCCTCAGAGTCGTGAACTTT----GAAAAGAGA
1 TGCCACTGAGTCGTGGACTTTGGAAGAAAAAAGA
*
801144 TGCCACTGAGTCGTGGACTTTGGGAGAAAAAAAGA
1 TGCCACTGAGTCGTGGACTTTGGAAG-AAAAAAGA
* *
801179 TGCCACTAAGTCGTGGAC-TTGGAAGAAAAATGA
1 TGCCACTGAGTCGTGGACTTTGGAAGAAAAAAGA
* *
801212 TTCTACTGAGTCGTGGACTTTAGGAAG
1 TGCCACTGAGTCGTGGACTTT-GGAAG
801239 GGTGCCACAG
Statistics
Matches: 128, Mismatches: 21, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
30 20 0.16
31 2 0.02
32 25 0.20
33 25 0.20
34 27 0.21
35 29 0.23
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (34 bp):
TGCCACTGAGTCGTGGACTTTGGAAGAAAAAAGA
Found at i:801224 original size:33 final size:34
Alignment explanation
Indices: 801136--801231 Score: 122
Period size: 33 Copynumber: 2.8 Consensus size: 34
801126 GTGAACTTTG
* *
801136 AAAAGAGATGCCACTGAGTCGTGGACTTTGGGAGA
1 AAAAAAGATGCCACTGAGTCGTGGAC-TTGGAAGA
*
801171 AAAAAAGATGCCACTAAGTCGTGGACTTGGAAG-
1 AAAAAAGATGCCACTGAGTCGTGGACTTGGAAGA
* * *
801204 AAAAATGATTCTACTGAGTCGTGGACTT
1 AAAAAAGATGCCACTGAGTCGTGGACTT
801232 TAGGAAGGGT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
33 24 0.44
34 6 0.11
35 24 0.44
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (34 bp):
AAAAAAGATGCCACTGAGTCGTGGACTTGGAAGA
Found at i:806392 original size:21 final size:21
Alignment explanation
Indices: 806359--806399 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
806349 CTAAGTAAAA
806359 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
806380 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
806400 CAAAGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:806580 original size:13 final size:13
Alignment explanation
Indices: 806562--806587 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
806552 ACACCAAAGT
806562 ATGTATCGATACA
1 ATGTATCGATACA
806575 ATGTATCGATACA
1 ATGTATCGATACA
806588 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:806585 original size:33 final size:33
Alignment explanation
Indices: 806543--806607 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
806533 TAGCTAAACT
* *
806543 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
806576 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
806608 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:816861 original size:17 final size:17
Alignment explanation
Indices: 816839--816871 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
816829 ACTGAACCCA
*
816839 TGTTGCTGGAATTTTCT
1 TGTTGCTAGAATTTTCT
816856 TGTTGCTAGAATTTTC
1 TGTTGCTAGAATTTTC
816872 ATTGGCCAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.12, G:0.21, T:0.52
Consensus pattern (17 bp):
TGTTGCTAGAATTTTCT
Found at i:818301 original size:21 final size:22
Alignment explanation
Indices: 818260--818305 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
818250 AAATAATTTT
*
818260 TATTTTATTTATATAAGATATA
1 TATTTAATTTATATAAGATATA
818282 TATTTAATTTA-AGTAA-ATATA
1 TATTTAATTTATA-TAAGATATA
818303 TAT
1 TAT
818306 AAGACAAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (22 bp):
TATTTAATTTATATAAGATATA
Found at i:821741 original size:38 final size:38
Alignment explanation
Indices: 821563--821743 Score: 163
Period size: 38 Copynumber: 4.8 Consensus size: 38
821553 CAAGCTATGA
** * *
821563 ACAAAAACTACTATT-TTAAACTGGTAGCACGGTTCGAA-
1 ACAAAAACTACTATTCTT-AACCAGTGGCATGGTTC-AAT
* * **
821601 ACGAAAACTACTATTCTAAACTGGTGGCATGGTTCAAT
1 ACAAAAACTACTATTCTTAACCAGTGGCATGGTTCAAT
* * * *
821639 AGAAAAACTACTATTCTTATCC-GATGGCACGGTTCATT
1 ACAAAAACTACTATTCTTAACCAG-TGGCATGGTTCAAT
* * *
821677 ACAAAAACTACTATTCTTATCTAGTGGCATAGTTCAAT
1 ACAAAAACTACTATTCTTAACCAGTGGCATGGTTCAAT
821715 ACAAAAA-TCACTATTCTTAACCAGTGGCA
1 ACAAAAACT-ACTATTCTTAACCAGTGGCA
821744 CAATTTGAAA
Statistics
Matches: 120, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
37 4 0.03
38 114 0.95
39 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.29
Consensus pattern (38 bp):
ACAAAAACTACTATTCTTAACCAGTGGCATGGTTCAAT
Found at i:821743 original size:76 final size:76
Alignment explanation
Indices: 821563--821744 Score: 201
Period size: 76 Copynumber: 2.4 Consensus size: 76
821553 CAAGCTATGA
* * * * * *
821563 ACAAAAACTACTATT-TTAAACTGGTAGCACGGTTCGA-AACGAAAACTACTATTCTAAACTGGT
1 ACAAAAACTACTATTCTT-AACCGATGGCACGGTTC-ATTACAAAAACTACTATTCTAAACTAGT
*
821626 GGCATGGTTCAAT
64 GGCATAGTTCAAT
* * * *
821639 AGAAAAACTACTATTCTTATCCGATGGCACGGTTCATTACAAAAACTACTATTCTTATCTAGTGG
1 ACAAAAACTACTATTCTTAACCGATGGCACGGTTCATTACAAAAACTACTATTCTAAACTAGTGG
821704 CATAGTTCAAT
66 CATAGTTCAAT
821715 ACAAAAA-TCACTATTCTTAACC-AGTGGCAC
1 ACAAAAACT-ACTATTCTTAACCGA-TGGCAC
821745 AATTTGAAAT
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
75 3 0.03
76 84 0.94
77 2 0.02
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.29
Consensus pattern (76 bp):
ACAAAAACTACTATTCTTAACCGATGGCACGGTTCATTACAAAAACTACTATTCTAAACTAGTGG
CATAGTTCAAT
Found at i:823527 original size:12 final size:13
Alignment explanation
Indices: 823507--823540 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
823497 GAACATTTTT
*
823507 TTATGTATTTATA
1 TTATTTATTTATA
823520 TT-TTTATTTATA
1 TTATTTATTTATA
823532 TTATTTATT
1 TTATTTATT
823541 ATTATTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (13 bp):
TTATTTATTTATA
Found at i:823635 original size:44 final size:41
Alignment explanation
Indices: 823587--823668 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 41
823577 ATATTTTATG
823587 TTTTTATATTCGTATA-ATATTTATTTTTTGTTATGATTTAATTA
1 TTTTTATATT-GTATATAT-TTTATTTTTTG-TAT-ATTTAATTA
* *
823631 TTTTTATATTGTGTTTATTTTATTTTTTGTATATTTAA
1 TTTTTATATTGTATATATTTTATTTTTTGTATATTTAA
823669 AGTATTAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
41 6 0.17
42 3 0.09
43 14 0.40
44 12 0.34
ACGTcount: A:0.24, C:0.01, G:0.07, T:0.67
Consensus pattern (41 bp):
TTTTTATATTGTATATATTTTATTTTTTGTATATTTAATTA
Found at i:823780 original size:23 final size:21
Alignment explanation
Indices: 823754--823795 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 21
823744 GTCTTGTTTA
823754 TATTATTTTTTATGTTATATTTT
1 TATTA-TTTTTAT-TTATATTTT
823777 TATTATTTTTATTTATATT
1 TATTATTTTTATTTATATT
823796 GTGTTCTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 7 0.37
23 5 0.26
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (21 bp):
TATTATTTTTATTTATATTTT
Found at i:823791 original size:26 final size:27
Alignment explanation
Indices: 823750--823831 Score: 71
Period size: 26 Copynumber: 3.1 Consensus size: 27
823740 TCTTGTCTTG
*
823750 TTTA-TATTATTT-TTTATGTTATATT
1 TTTATTATTATTTATTTATATTATATT
* *
823775 TTTATTATT-TTTATTTATATTGTGTT
1 TTTATTATTATTTATTTATATTATATT
* * * *
823801 CTTATTATGTCTTGATTTATTTTATATT
1 TTTATTAT-TATTTATTTATATTATATT
823829 TTT
1 TTT
823832 GATATAATTG
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
25 7 0.16
26 21 0.48
27 1 0.02
28 15 0.34
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.71
Consensus pattern (27 bp):
TTTATTATTATTTATTTATATTATATT
Found at i:918165 original size:28 final size:28
Alignment explanation
Indices: 918128--918183 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
918118 TTCATGAAAT
*
918128 TTTATTGTTTTTGATAATAGGCACAAAAC
1 TTTATTGTTTTTGATAATAGCCA-AAAAC
*
918157 TTTA-TGTTTTTGATTATAGCCAAAAAC
1 TTTATTGTTTTTGATAATAGCCAAAAAC
918184 CCATGCTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.20
28 16 0.64
29 4 0.16
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.43
Consensus pattern (28 bp):
TTTATTGTTTTTGATAATAGCCAAAAAC
Found at i:919334 original size:34 final size:36
Alignment explanation
Indices: 919276--919342 Score: 111
Period size: 34 Copynumber: 1.9 Consensus size: 36
919266 AATTCAGGTG
919276 TTAAATAATTTTTAATTAATAAAAAATAATAATTAA
1 TTAAATAATTTTTAATTAATAAAAAATAATAATTAA
*
919312 TTAAAT-ATTTTTAA-TAATAAAAAATATTAAT
1 TTAAATAATTTTTAATTAATAAAAAATAATAAT
919343 GATATCTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 16 0.53
35 8 0.27
36 6 0.20
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (36 bp):
TTAAATAATTTTTAATTAATAAAAAATAATAATTAA
Found at i:920114 original size:26 final size:24
Alignment explanation
Indices: 920051--920120 Score: 61
Period size: 23 Copynumber: 2.8 Consensus size: 24
920041 TATGAGATTA
920051 AAAATTATATATAAATATTAAATTTT
1 AAAA-TATA-ATAAATATTAAATTTT
* **
920077 AAAAT-TATTAAATATTATTTTTT
1 AAAATATAATAAATATTAAATTTT
*
920100 ATAAATAATAATAAAAATTAA
1 A-AAAT-ATAATAAATATTAA
920121 TTAAATTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
23 14 0.40
24 6 0.17
25 1 0.03
26 14 0.40
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
AAAATATAATAAATATTAAATTTT
Found at i:922875 original size:22 final size:20
Alignment explanation
Indices: 922834--922876 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 20
922824 TGTGACTTAT
* *
922834 AAAAAAAATTATGATGTTTA
1 AAAAAAAATTATAATATTTA
922854 AAAAATAATATTATAATATTTA
1 AAAAA-AA-ATTATAATATTTA
922876 A
1 A
922877 TATATGTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 2 0.11
22 12 0.63
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
AAAAAAAATTATAATATTTA
Found at i:923228 original size:20 final size:22
Alignment explanation
Indices: 923203--923250 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
923193 ATATACATAT
923203 ATATTTTT-TTG-TAATGAAAA
1 ATATTTTTCTTGTTAATGAAAA
*
923223 ATATTTTTCTTGTTGATGAAAA
1 ATATTTTTCTTGTTAATGAAAA
923245 ATATTT
1 ATATTT
923251 CTAATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 8 0.32
21 3 0.12
22 14 0.56
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.52
Consensus pattern (22 bp):
ATATTTTTCTTGTTAATGAAAA
Found at i:924270 original size:24 final size:23
Alignment explanation
Indices: 924250--924306 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
924240 TTTAAAATGG
924250 TTCTATTTTTATTTTTAAAAATA
1 TTCTATTTTTATTTTTAAAAATA
* *
924273 TTTTATTTTTATTTTTCAAAAAAA
1 TTCTATTTTTATTTTT-AAAAATA
924297 TT-TATTTTTA
1 TTCTATTTTTA
924307 AAATTTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 23 0.74
24 8 0.26
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (23 bp):
TTCTATTTTTATTTTTAAAAATA
Found at i:926396 original size:18 final size:18
Alignment explanation
Indices: 926373--926447 Score: 75
Period size: 17 Copynumber: 4.3 Consensus size: 18
926363 TTTTATGTTC
926373 AATATATAAAATTTTATA
1 AATATATAAAATTTTATA
* * *
926391 AATATATTAAGTTTTTTA
1 AATATATAAAATTTTATA
*
926409 TA-ATATAAAATTTTATA
1 AATATATAAAATTTTATA
* *
926426 AATAAAT-AATTTTTAT-
1 AATATATAAAATTTTATA
926442 AATATA
1 AATATA
926448 AATATTGTAC
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
16 5 0.11
17 21 0.47
18 19 0.42
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (18 bp):
AATATATAAAATTTTATA
Found at i:926421 original size:35 final size:32
Alignment explanation
Indices: 926376--926449 Score: 112
Period size: 35 Copynumber: 2.2 Consensus size: 32
926366 TATGTTCAAT
*
926376 ATATAAAATTTTATAAATATATTAAGTTTTTTATA
1 ATATAAAATTTTATAAATA-AATAA--TTTTTATA
926411 ATATAAAATTTTATAAATAAATAATTTTTATA
1 ATATAAAATTTTATAAATAAATAATTTTTATA
926443 ATATAAA
1 ATATAAA
926450 TATTGTACAT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
32 15 0.39
34 4 0.11
35 19 0.50
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (32 bp):
ATATAAAATTTTATAAATAAATAATTTTTATA
Found at i:926429 original size:16 final size:17
Alignment explanation
Indices: 926376--926463 Score: 76
Period size: 16 Copynumber: 5.2 Consensus size: 17
926366 TATGTTCAAT
926376 ATATAAAATTTTATA-A
1 ATATAAAATTTTATATA
* *
926392 ATATATTAAGTTTTTTATA
1 ATATA--AAATTTTATATA
926411 ATATAAAATTTTATA-A
1 ATATAAAATTTTATATA
926427 ATA-AATAATTTT-TATA
1 ATATAA-AATTTTATATA
* *
926443 ATATAAATATTGTACATA
1 ATATAAA-ATTTTATATA
926461 ATA
1 ATA
926464 AGTATTAATA
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
15 4 0.07
16 20 0.34
17 14 0.24
18 14 0.24
19 6 0.10
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (17 bp):
ATATAAAATTTTATATA
Found at i:926986 original size:15 final size:16
Alignment explanation
Indices: 926960--927001 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
926950 AAATAAATAT
*
926960 AATGATTTTTTATTTAA
1 AATGA-TTTTTATGTAA
926977 AAT-ATTTTTATGTAA
1 AATGATTTTTATGTAA
*
926992 TATGATTTTT
1 AATGATTTTT
927002 TCCATGATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 12 0.55
16 7 0.32
17 3 0.14
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (16 bp):
AATGATTTTTATGTAA
Found at i:928340 original size:2 final size:2
Alignment explanation
Indices: 928271--928321 Score: 84
Period size: 2 Copynumber: 25.5 Consensus size: 2
928261 TTTATTATTG
*
928271 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
928313 TA AA TA TA T
1 TA TA TA TA T
928322 TGTATTGTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:928530 original size:2 final size:2
Alignment explanation
Indices: 928523--928557 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
928513 ACAATCTTAA
928523 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
928558 AAAGCAGCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:928894 original size:20 final size:20
Alignment explanation
Indices: 928861--928898 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
928851 TATGGTAATC
*
928861 TAAAAATGATATTACAAAAAT
1 TAAAAATGAAATTA-AAAAAT
928882 TAAAAAT-AAATTAAAAA
1 TAAAAATGAAATTAAAAA
928899 TTTATGATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 5 0.31
21 7 0.44
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
TAAAAATGAAATTAAAAAAT
Found at i:930164 original size:24 final size:21
Alignment explanation
Indices: 930113--930174 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 21
930103 AAGCTGGCTC
930113 ATTTTTAATTATATAATATATT
1 ATTTTT-ATTATATAATATATT
930135 AGTTTTATATTTATATACAT-TATAT
1 A-TTTT-TA-TTATATA-ATATAT-T
930160 ATTTTTATTATATAA
1 ATTTTTATTATATAA
930175 AAAATAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
21 1 0.03
22 8 0.23
23 7 0.20
24 15 0.43
25 4 0.11
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
ATTTTTATTATATAATATATT
Found at i:930314 original size:21 final size:22
Alignment explanation
Indices: 930256--930311 Score: 112
Period size: 22 Copynumber: 2.5 Consensus size: 22
930246 TTAAATTATT
930256 AAAAATTAAAAAATATTTTTTA
1 AAAAATTAAAAAATATTTTTTA
930278 AAAAATTAAAAAATATTTTTTA
1 AAAAATTAAAAAATATTTTTTA
930300 AAAAATTAAAAA
1 AAAAATTAAAAA
930312 TATAATATAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAAATTAAAAAATATTTTTTA
Found at i:931459 original size:23 final size:22
Alignment explanation
Indices: 931404--931459 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 22
931394 AAATATTAAT
* *
931404 TTTAAAATATAATTTTTTAAATA
1 TTTAAAAT-TAATTTTTAAAAAA
*
931427 TAT-AAA-TAATTTTTAAAAAAA
1 TTTAAAATTAATTTTT-AAAAAA
931448 TTTAAAATTAAT
1 TTTAAAATTAAT
931460 AATATCTAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
20 8 0.31
21 6 0.23
22 6 0.23
23 6 0.23
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
TTTAAAATTAATTTTTAAAAAA
Found at i:932267 original size:30 final size:30
Alignment explanation
Indices: 932229--932377 Score: 208
Period size: 30 Copynumber: 5.0 Consensus size: 30
932219 ATGAGAGAAA
* *
932229 CAACTACAAAAACAATGGCTACACCAGAAG
1 CAACTACAACAACAATGGCTACACCAGCAG
*
932259 CAATTACAACAACAATGGCTACACCAGCAG
1 CAACTACAACAACAATGGCTACACCAGCAG
* **
932289 CAACTACAACAACAATGGCTATACCCTCAG
1 CAACTACAACAACAATGGCTACACCAGCAG
* **
932319 CAACTACAACAACAATGGCTATACCCTCAG
1 CAACTACAACAACAATGGCTACACCAGCAG
*
932349 CAACTACGACAACAATGGCTACACCAGCA
1 CAACTACAACAACAATGGCTACACCAGCA
932378 ACTACAAGAA
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 108 1.00
ACGTcount: A:0.43, C:0.32, G:0.12, T:0.13
Consensus pattern (30 bp):
CAACTACAACAACAATGGCTACACCAGCAG
Found at i:932308 original size:60 final size:60
Alignment explanation
Indices: 932229--932396 Score: 207
Period size: 60 Copynumber: 2.9 Consensus size: 60
932219 ATGAGAGAAA
* *
932229 CAACTACAAAAACAATGGCTACACCAGAAGCAATTACAACAACAATGGCTACACCAGCAG
1 CAACTACAACAACAATGGCTACACCAGAAGCAACTACAACAACAATGGCTACACCAGCAG
* *** * **
932289 CAACTACAACAACAATGGCTATACCCTCAGCAACTACAACAACAATGGCTATACCCTCAG
1 CAACTACAACAACAATGGCTACACCAGAAGCAACTACAACAACAATGGCTACACCAGCAG
* * *
932349 CAACTACGACAACAATGGCTACACC---AGCAACTACAAGAATAATGGCTA
1 CAACTACAACAACAATGGCTACACCAGAAGCAACTACAACAACAATGGCTA
932397 TGAGGCTGAG
Statistics
Matches: 95, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
57 21 0.22
60 74 0.78
ACGTcount: A:0.43, C:0.30, G:0.12, T:0.14
Consensus pattern (60 bp):
CAACTACAACAACAATGGCTACACCAGAAGCAACTACAACAACAATGGCTACACCAGCAG
Found at i:932368 original size:90 final size:87
Alignment explanation
Indices: 932229--932397 Score: 230
Period size: 90 Copynumber: 1.9 Consensus size: 87
932219 ATGAGAGAAA
*
932229 CAACTACAAAAACAATGGCTACACCAGAAGCAATTACAACAACAATGGCTACACCAGCAGCAACT
1 CAACTACAAAAACAATGGCTACACCAGAAGCAACTACAACAACAATGGCTACA-C--CAGCAACT
932294 ACAACAACAATGGCTATACCCTCAG
63 ACAACAACAATGGCTATACCCTCAG
* * *** *
932319 CAACTACAACAACAATGGCTATACCCTCAGCAACTACGACAACAATGGCTACACCAGCAACTACA
1 CAACTACAAAAACAATGGCTACACCAGAAGCAACTACAACAACAATGGCTACACCAGCAACTACA
* *
932384 AGAATAATGGCTAT
66 ACAACAATGGCTAT
932398 GAGGCTGAGA
Statistics
Matches: 70, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
87 23 0.33
89 1 0.01
90 46 0.66
ACGTcount: A:0.43, C:0.30, G:0.12, T:0.15
Consensus pattern (87 bp):
CAACTACAAAAACAATGGCTACACCAGAAGCAACTACAACAACAATGGCTACACCAGCAACTACA
ACAACAATGGCTATACCCTCAG
Found at i:934074 original size:28 final size:29
Alignment explanation
Indices: 934029--934085 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
934019 TATGAGTATT
*
934029 AATTTTTTTAAATAATAAGGCAAT-GAAA
1 AATTTTTTTAAATAATAAGGAAATAGAAA
*
934057 AATTTTATTTACAT-ATAAGGAAATAGAAA
1 AATTTT-TTTAAATAATAAGGAAATAGAAA
934086 CTTTTAGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.35
Consensus pattern (29 bp):
AATTTTTTTAAATAATAAGGAAATAGAAA
Found at i:935244 original size:16 final size:16
Alignment explanation
Indices: 935219--935265 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
935209 CTCAATTGTA
935219 CTAAAATTGAAATAAT
1 CTAAAATTGAAATAAT
* * **
935235 TTAAACTTGAAAGGAT
1 CTAAAATTGAAATAAT
935251 CTAAAATTGAAATAA
1 CTAAAATTGAAATAA
935266 ATCAAAATCA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.53, C:0.06, G:0.11, T:0.30
Consensus pattern (16 bp):
CTAAAATTGAAATAAT
Found at i:935552 original size:37 final size:38
Alignment explanation
Indices: 935511--935590 Score: 101
Period size: 39 Copynumber: 2.1 Consensus size: 38
935501 TCATCAAAAT
935511 AATATAATT-TATATAA-TTTTAAAAATATTATAATAAA
1 AATATAATTATATATAATTTTTAAAAATATTAT-ATAAA
* **
935548 AATATAATTAATTTATAATTTTTATTAATATTATATAAA
1 AATATAATT-ATATATAATTTTTAAAAATATTATATAAA
935587 AATA
1 AATA
935591 ATCTCGTAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
37 9 0.24
39 15 0.41
40 13 0.35
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (38 bp):
AATATAATTATATATAATTTTTAAAAATATTATATAAA
Found at i:935592 original size:37 final size:40
Alignment explanation
Indices: 935496--935592 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
935486 TATATTTTTT
* *
935496 TATTATCATCAAAATAATATAATTTATATAATTTTAAAAA
1 TATTATAATAAAAATAATATAATTTATATAATTTTAAAAA
* **
935536 TATTATAATAAAAAT-ATAATTAATTTATA-ATTTTTATTAA
1 TATTATAATAAAAATAAT-A-TAATTTATATAATTTTAAAAA
935576 TATTAT-ATAAAAATAAT
1 TATTATAATAAAAATAAT
935593 CTCGTAACAT
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
39 10 0.20
40 30 0.61
41 9 0.18
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (40 bp):
TATTATAATAAAAATAATATAATTTATATAATTTTAAAAA
Found at i:941632 original size:16 final size:16
Alignment explanation
Indices: 941621--941675 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
941611 TTATTTCAGG
941621 TTTAGATCATTTCGGA
1 TTTAGATCATTTCGGA
* *
941637 TTCAAATCATTTCAGG-
1 TTTAGATCATTTC-GGA
*
941653 TTTGGATCATTTCGGA
1 TTTAGATCATTTCGGA
941669 TTTAGAT
1 TTTAGAT
941676 TAATCGGGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
15 2 0.06
16 27 0.87
17 2 0.06
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (16 bp):
TTTAGATCATTTCGGA
Found at i:941760 original size:22 final size:21
Alignment explanation
Indices: 941735--941778 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
941725 GGATTAAATC
*
941735 AGGTTCAAATCATTTTAGGTTT
1 AGGTTCAAATCA-ATTAGGTTT
* *
941757 AGGTTTAAGTCAATTAGGTTT
1 AGGTTCAAATCAATTAGGTTT
941778 A
1 A
941779 ACAGTTAGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (21 bp):
AGGTTCAAATCAATTAGGTTT
Found at i:945331 original size:2 final size:2
Alignment explanation
Indices: 945324--945368 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
945314 TAACACGCTT
945324 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
945366 GA G
1 GA G
945369 TTACAAGACA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:945791 original size:14 final size:13
Alignment explanation
Indices: 945766--945804 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
945756 GGTCGAAGCT
*
945766 TTGCTCTTGCCCC
1 TTGCCCTTGCCCC
*
945779 TTGCCCTTTGCCCT
1 TTGCCC-TTGCCCC
945793 TTGCCCTTGCCC
1 TTGCCCTTGCCC
945805 TGGATAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGCCCTTGCCCC
Found at i:945792 original size:13 final size:13
Alignment explanation
Indices: 945764--945805 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
945754 AAGGTCGAAG
*
945764 CTTTGCTCTTGCC
1 CTTTGCCCTTGCC
*
945777 CCTTGCCCTTTGCC
1 CTTTGCCC-TTGCC
945791 CTTTGCCCTTGCC
1 CTTTGCCCTTGCC
945804 CT
1 CT
945806 GGATAAACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.00, C:0.45, G:0.14, T:0.40
Consensus pattern (13 bp):
CTTTGCCCTTGCC
Found at i:952861 original size:18 final size:18
Alignment explanation
Indices: 952840--952891 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
952830 TTTTTTGATA
952840 TAAATATTTTTTATTTTT
1 TAAATATTTTTTATTTTT
*
952858 TAAA-ATTTTTTTATATTT
1 TAAATA-TTTTTTATTTTT
* * *
952876 AAAATGTTTTATATTT
1 TAAATATTTTTTATTT
952892 ATACATATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
17 1 0.04
18 26 0.96
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (18 bp):
TAAATATTTTTTATTTTT
Found at i:952865 original size:17 final size:18
Alignment explanation
Indices: 952840--952889 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
952830 TTTTTTGATA
*
952840 TAAATATTTTTTAT-TTTT
1 TAAA-ATTTTTTATATATT
952858 TAAAATTTTTT-TATATT
1 TAAAATTTTTTATATATT
*
952875 TAAAATGTTTTATAT
1 TAAAATTTTTTATAT
952890 TTATACATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 1 0.04
17 20 0.71
18 7 0.25
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TAAAATTTTTTATATATT
Found at i:952888 original size:16 final size:17
Alignment explanation
Indices: 952856--952892 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
952846 TTTTTTATTT
*
952856 TTTAAAATTTTTTTATA
1 TTTAAAATTGTTTTATA
952873 TTTAAAA-TGTTTTATA
1 TTTAAAATTGTTTTATA
952889 TTTA
1 TTTA
952893 TACATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTTAAAATTGTTTTATA
Found at i:954693 original size:3 final size:3
Alignment explanation
Indices: 954685--954709 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
954675 CTCAAGACTC
954685 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
954710 GTTAATGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:955644 original size:2 final size:2
Alignment explanation
Indices: 955637--955664 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
955627 TGTATTTGAC
955637 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
955665 CCGAAACTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:959654 original size:2 final size:2
Alignment explanation
Indices: 959647--959671 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
959637 AGAGTATTGG
959647 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
959672 TGATTATAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:960332 original size:2 final size:2
Alignment explanation
Indices: 960325--960364 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
960315 TGATTATCCA
960325 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
960365 CCGTGGTTAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:960719 original size:24 final size:24
Alignment explanation
Indices: 960672--960718 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
960662 TAATATTATT
* *
960672 TTTTAAAAAATAATTATTATTTTA
1 TTTTAAAAAATAATAATCATTTTA
960696 TTTTAAAATAATAATAATCATTT
1 TTTTAAAA-AATAATAATCATTT
960719 AAATAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (24 bp):
TTTTAAAAAATAATAATCATTTTA
Found at i:963882 original size:16 final size:16
Alignment explanation
Indices: 963861--963894 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
963851 TTAAATATAA
*
963861 TTTAAAATATTTTTAT
1 TTTAAAATAATTTTAT
963877 TTTAAAATAATTTTAT
1 TTTAAAATAATTTTAT
963893 TT
1 TT
963895 ATTTAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTAAAATAATTTTAT
Found at i:963905 original size:26 final size:27
Alignment explanation
Indices: 963844--963905 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
963834 AAATTAGATA
963844 TTAATTTTTAAATATAATTTAAAATAT
1 TTAATTTTTAAATATAATTTAAAATAT
* * **
963871 TT-TTATTTTAAA-ATAATTTTATTTAT
1 TTAAT-TTTTAAATATAATTTAAAATAT
963897 TTAATTTTT
1 TTAATTTTT
963906 TATAAAAATC
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
26 18 0.64
27 10 0.36
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (27 bp):
TTAATTTTTAAATATAATTTAAAATAT
Found at i:965839 original size:33 final size:34
Alignment explanation
Indices: 965772--965848 Score: 90
Period size: 33 Copynumber: 2.3 Consensus size: 34
965762 TTTAACCAGA
965772 TTTTATATATTACATATATATATATATATAAAAT
1 TTTTATATATTACATATATATATATATATAAAAT
965806 TTTTGATATATTA-ATA-AT-TCATACTATAT-AAAT
1 TTTT-ATATATTACATATATAT-ATA-TATATAAAAT
*
965839 TTTAATATAT
1 TTTTATATAT
965849 ATATGTATTT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
32 7 0.18
33 12 0.31
34 12 0.31
35 8 0.21
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.51
Consensus pattern (34 bp):
TTTTATATATTACATATATATATATATATAAAAT
Found at i:967076 original size:32 final size:32
Alignment explanation
Indices: 967031--967097 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
967021 GGTAATAACT
** *
967031 AATCAATTGAGGGGCAATTGTATTA-ATAGTTA
1 AATCAATAAAGGGGCAATTGTAGTAGAT-GTTA
*
967063 AATCAATAAAGGGGTAATTGTAGTAGATGTTA
1 AATCAATAAAGGGGCAATTGTAGTAGATGTTA
967095 AAT
1 AAT
967098 TAATTGAGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 28 0.93
33 2 0.07
ACGTcount: A:0.40, C:0.04, G:0.22, T:0.33
Consensus pattern (32 bp):
AATCAATAAAGGGGCAATTGTAGTAGATGTTA
Found at i:968505 original size:26 final size:26
Alignment explanation
Indices: 968467--968521 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
968457 ATTTTATCAA
968467 AAATAAAAAAATT-ATTAATATTTTAT
1 AAATAAAAAAATTAATTAAT-TTTTAT
* *
968493 AAATAACATAATTCAATTAATTTTTAT
1 AAATAAAAAAATT-AATTAATTTTTAT
968520 AA
1 AA
968522 TAATTTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 11 0.44
27 8 0.32
28 6 0.24
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.42
Consensus pattern (26 bp):
AAATAAAAAAATTAATTAATTTTTAT
Found at i:968835 original size:56 final size:56
Alignment explanation
Indices: 968761--968874 Score: 228
Period size: 56 Copynumber: 2.0 Consensus size: 56
968751 AACTCAGAAG
968761 TAGGTGAAATACTTGGCTGTTTCAACCTCAATGGCAACGAAATTAACTCTATTATT
1 TAGGTGAAATACTTGGCTGTTTCAACCTCAATGGCAACGAAATTAACTCTATTATT
968817 TAGGTGAAATACTTGGCTGTTTCAACCTCAATGGCAACGAAATTAACTCTATTATT
1 TAGGTGAAATACTTGGCTGTTTCAACCTCAATGGCAACGAAATTAACTCTATTATT
968873 TA
1 TA
968875 TATAAGTTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 58 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (56 bp):
TAGGTGAAATACTTGGCTGTTTCAACCTCAATGGCAACGAAATTAACTCTATTATT
Found at i:971051 original size:20 final size:21
Alignment explanation
Indices: 971026--971065 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
971016 CAAATAATTA
971026 TAATTTT-ATCATACTATTTG
1 TAATTTTAATCATACTATTTG
*
971046 TAATTTTAATTATACTATTT
1 TAATTTTAATCATACTATTT
971066 TTTATAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (21 bp):
TAATTTTAATCATACTATTTG
Found at i:971082 original size:20 final size:20
Alignment explanation
Indices: 971059--971096 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
971049 TTTTAATTAT
*
971059 ACTATTTTTTATAAAATTCA
1 ACTATTTATTATAAAATTCA
971079 ACTATTTATTATAAAATT
1 ACTATTTATTATAAAATT
971097 ATAATTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (20 bp):
ACTATTTATTATAAAATTCA
Found at i:971684 original size:16 final size:15
Alignment explanation
Indices: 971654--971698 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 15
971644 ATTATATTAC
*
971654 TAAAGAATAAATTTT
1 TAAAAAATAAATTTT
971669 TAAAAAATATAATTTTT
1 TAAAAAATA-AA-TTTT
971686 TAAAAAATAAATT
1 TAAAAAATAAATT
971699 AGAAAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 10 0.37
16 4 0.15
17 13 0.48
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
TAAAAAATAAATTTT
Found at i:972540 original size:29 final size:28
Alignment explanation
Indices: 972485--972540 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
972475 TAAAATTTAA
* *
972485 TTAATTAAAATATTTAAAGTAATAAAAG
1 TTAATTAAAAAATTTAAAGTAAAAAAAG
972513 TTAATTTAAAAAATTTAATAG-AAAAAAA
1 TTAA-TTAAAAAATTTAA-AGTAAAAAAA
972541 TCAATAGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.17
29 18 0.75
30 2 0.08
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (28 bp):
TTAATTAAAAAATTTAAAGTAAAAAAAG
Found at i:973111 original size:25 final size:26
Alignment explanation
Indices: 973055--973117 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
973045 TTACCTAAAT
* *
973055 TTTTAAAATCTAAATTTATATTTTAAC
1 TTTTAAAATTTAAA-TTAGATTTTAAC
* *
973082 CTTTAAAATTTAAA-TAGATTTTATC
1 TTTTAAAATTTAAATTAGATTTTAAC
973107 TTTTAAAATTT
1 TTTTAAAATTT
973118 CTTCAGATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 19 0.61
27 12 0.39
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.52
Consensus pattern (26 bp):
TTTTAAAATTTAAATTAGATTTTAAC
Found at i:973283 original size:16 final size:16
Alignment explanation
Indices: 973262--973297 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
973252 TTCGATTCAT
973262 AGTGTTATCGTCGATA
1 AGTGTTATCGTCGATA
973278 AGTGTTATCGTCGATA
1 AGTGTTATCGTCGATA
973294 AGTG
1 AGTG
973298 CTATTGACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.11, G:0.28, T:0.36
Consensus pattern (16 bp):
AGTGTTATCGTCGATA
Found at i:973950 original size:85 final size:86
Alignment explanation
Indices: 973861--974129 Score: 328
Period size: 87 Copynumber: 3.1 Consensus size: 86
973851 TTTTTCGAAT
* * *
973861 CAGTGACTGGTAATTTTTTATTGATTGTTTTATATGTGCTTTTATATATAATGTTTCATAATTGA
1 CAGTGATTGGTAATTTTTTATTGATTGTTTTCTATGTCCTTTTATATATAATGTTTCATAATTGA
973926 -TTCTAAGTACTTTTTGATAG
66 TTTCTAAGTACTTTTTGATAG
* * *
973946 CAGTGATCGGTAATTTTTTATTGATTGTTTTCTATGTCCCTCTATATATAATGTTTCATAATTGA
1 CAGTGATTGGTAATTTTTTATTGATTGTTTTCTATGTCCTTTTATATATAATGTTTCATAATTGA
* * *
974011 TTTCTAAATTCTTTTTTATCA-
66 TTTCTAAGTACTTTTTGAT-AG
* * ** * * * *
974032 CAGTTGATTGATAATTTTTTATTGATTATTTTCTACCTCCTTTAATGTATAATGTTACATAATGG
1 CAG-TGATTGGTAATTTTTTATTGATTGTTTTCTATGTCCTTTTATATATAATGTTTCATAATTG
*
974097 ATTTCTAAGTACTTCTTGAT-G
65 ATTTCTAAGTACTTTTTGATAG
974118 ACAGTGATTGGT
1 -CAGTGATTGGT
974130 TGTTTTTATT
Statistics
Matches: 154, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
85 59 0.38
86 25 0.16
87 70 0.45
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (86 bp):
CAGTGATTGGTAATTTTTTATTGATTGTTTTCTATGTCCTTTTATATATAATGTTTCATAATTGA
TTTCTAAGTACTTTTTGATAG
Found at i:974143 original size:3 final size:3
Alignment explanation
Indices: 974135--974173 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
974125 TTGGTTGTTT
974135 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
974174 GTGGTGAGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:979574 original size:20 final size:19
Alignment explanation
Indices: 979519--979574 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
979509 AAAACCCTTA
*
979519 AAAGTATCGATACATAATTC
1 AAAGTATCGATACAT-GTTC
979539 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
979559 AATGTATCGATACATG
1 AAAGTATCGATACATG
979575 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:979662 original size:13 final size:13
Alignment explanation
Indices: 979644--979669 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
979634 TACACAAAAT
979644 ATGTATCGATACA
1 ATGTATCGATACA
979657 ATGTATCGATACA
1 ATGTATCGATACA
979670 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:979667 original size:32 final size:34
Alignment explanation
Indices: 979626--979690 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 34
979616 TAGCCAAACT
*
979626 TGTATCGATACAC-AAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAAATTGTATCGATACAA
979658 TGTATCGATACACAAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAAATTGTATCGATACA
979691 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 13 0.43
33 5 0.17
34 12 0.40
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (34 bp):
TGTATCGATACACAAAAAAATTGTATCGATACAA
Found at i:980767 original size:37 final size:37
Alignment explanation
Indices: 980717--980790 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
980707 TATTATCAAT
980717 GGACCTCGTATTCCATTGATCGAAGGCACTATGGTTC
1 GGACCTCGTATTCCATTGATCGAAGGCACTATGGTTC
980754 GGACCTCGTATTCCATTGATCGAAGGCACTATGGTTC
1 GGACCTCGTATTCCATTGATCGAAGGCACTATGGTTC
980791 CGAAGAGGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (37 bp):
GGACCTCGTATTCCATTGATCGAAGGCACTATGGTTC
Found at i:981961 original size:21 final size:21
Alignment explanation
Indices: 981928--981977 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
981918 TTGCAAGTTG
*
981928 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
981950 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
981971 AAATAAA
1 AAATAAA
981978 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:983795 original size:15 final size:15
Alignment explanation
Indices: 983775--983805 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
983765 TAAAAATATC
*
983775 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
983790 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
983805 C
1 C
983806 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:985891 original size:20 final size:20
Alignment explanation
Indices: 985820--985897 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 20
985810 AATGTCCAAA
985820 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACAT-TTTTCT
* *
985840 GTGTATCGATACATTTGGAAATTCA
1 ATGTATCGATACATTT-----TTCT
985865 ATGTATCGATACATTTTTCT
1 ATGTATCGATACATTTTTCT
*
985885 TTGTATCGATACA
1 ATGTATCGATACA
985898 ATGTATCGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
19 2 0.04
20 28 0.60
24 2 0.04
25 15 0.32
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCT
Found at i:985904 original size:13 final size:13
Alignment explanation
Indices: 985886--985923 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
985876 CATTTTTCTT
985886 TGTATCGATACAA
1 TGTATCGATACAA
*
985899 TGTATCGATACAC
1 TGTATCGATACAA
985912 TGTATCGATACA
1 TGTATCGATACA
985924 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:987759 original size:28 final size:29
Alignment explanation
Indices: 987727--987782 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
987717 ATTTTTGATA
987727 TGAATTACTTGATTAA-GGGGAGAATGTG
1 TGAATTACTTGATTAAGGGGGAGAATGTG
*
987755 TGAATTACTTTATTAAGGGGGAGAATGT
1 TGAATTACTTGATTAAGGGGGAGAATGT
987783 ACAAATTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (29 bp):
TGAATTACTTGATTAAGGGGGAGAATGTG
Found at i:987789 original size:29 final size:28
Alignment explanation
Indices: 987729--987789 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
987719 TTTTGATATG
***
987729 AATTACTTGATTAAGGGGAGAATGTGTG
1 AATTACTTGATTAAGGGGAGAATGTACA
*
987757 AATTACTTTATTAAGGGGGAGAATGTACA
1 AATTACTTGATTAA-GGGGAGAATGTACA
987786 AATT
1 AATT
987790 TGTTAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.36, C:0.05, G:0.26, T:0.33
Consensus pattern (28 bp):
AATTACTTGATTAAGGGGAGAATGTACA
Found at i:988388 original size:20 final size:19
Alignment explanation
Indices: 988333--988388 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
988323 AAAACCCTTA
*
988333 AAAGTATCGATACATAATTC
1 AAAGTATCGATACAT-GTTC
988353 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
988373 AATGTATCGATACATG
1 AAAGTATCGATACATG
988389 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:988476 original size:13 final size:13
Alignment explanation
Indices: 988458--988483 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
988448 TACACAAAAT
988458 ATGTATCGATACA
1 ATGTATCGATACA
988471 ATGTATCGATACA
1 ATGTATCGATACA
988484 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:988481 original size:32 final size:34
Alignment explanation
Indices: 988440--988504 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 34
988430 TAGCCAAACT
*
988440 TGTATCGATACAC-AAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAAATTGTATCGATACAA
988472 TGTATCGATACACAAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAAATTGTATCGATACA
988505 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 13 0.43
33 5 0.17
34 12 0.40
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (34 bp):
TGTATCGATACACAAAAAAATTGTATCGATACAA
Found at i:993570 original size:13 final size:13
Alignment explanation
Indices: 993552--993576 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
993542 AGATTGCACA
993552 GTATCGATACATT
1 GTATCGATACATT
993565 GTATCGATACAT
1 GTATCGATACAT
993577 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:993721 original size:33 final size:32
Alignment explanation
Indices: 993659--993722 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
993649 CTTAACTGTT
* *
993659 TGTATCGATACACACAAGATGTATTGATACAA
1 TGTATCGATACACACAAAATGTATCGATACAA
*
993691 TGTATCGATACATCCCAAAATGTATCGATACA
1 TGTATCGATACA-CACAAAATGTATCGATACA
993723 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (32 bp):
TGTATCGATACACACAAAATGTATCGATACAA
Found at i:999865 original size:13 final size:13
Alignment explanation
Indices: 999847--999882 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
999837 ACATTCTCTA
*
999847 TATCGATACATTG
1 TATCGATACAGTG
999860 TATCGATACAGTG
1 TATCGATACAGTG
999873 TATCGATACA
1 TATCGATACA
999883 AAGGGTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (13 bp):
TATCGATACAGTG
Found at i:1002498 original size:33 final size:32
Alignment explanation
Indices: 1002435--1002498 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
1002425 CTTAACTGTT
*
1002435 TGTATCGATACACACAAGATGTATCAATACAA
1 TGTATCGATACACACAAAATGTATCAATACAA
* *
1002467 TGTATCGATACATCCCAAAATGTATCGATACA
1 TGTATCGATACA-CACAAAATGTATCAATACA
1002499 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.41, C:0.20, G:0.12, T:0.27
Consensus pattern (32 bp):
TGTATCGATACACACAAAATGTATCAATACAA
Found at i:1012188 original size:22 final size:23
Alignment explanation
Indices: 1012163--1012205 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
1012153 TTTGGGGGCG
1012163 AAATTAAATTT-AACATGTTACA
1 AAATTAAATTTAAACATGTTACA
1012185 AAATTAAATTTAAACATGTTA
1 AAATTAAATTTAAACATGTTA
1012206 GTTTCTTCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.37
Consensus pattern (23 bp):
AAATTAAATTTAAACATGTTACA
Found at i:1015507 original size:20 final size:21
Alignment explanation
Indices: 1015470--1015521 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
1015460 TTCTATAATT
*
1015470 TGTATAGATACAATAAGTGAA
1 TGTATCGATACAATAAGTGAA
1015491 TGTATCGATAC-ATAAGTGAA
1 TGTATCGATACAATAAGTGAA
*
1015511 TATATCGATAC
1 TGTATCGATAC
1015522 TGAACCATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 19 0.66
21 10 0.34
ACGTcount: A:0.42, C:0.10, G:0.17, T:0.31
Consensus pattern (21 bp):
TGTATCGATACAATAAGTGAA
Found at i:1018998 original size:20 final size:20
Alignment explanation
Indices: 1018943--1019000 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
1018933 CAAAAACCCA
* * *
1018943 AAATGTATAGATACAATGAG
1 AAATGTATCGATACATTTAG
1018963 AAATGTATCGATACATTTAG
1 AAATGTATCGATACATTTAG
*
1018983 TAATGTATCGATACATTT
1 AAATGTATCGATACATTT
1019001 CCTTGGCAGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (20 bp):
AAATGTATCGATACATTTAG
Found at i:1021489 original size:5 final size:5
Alignment explanation
Indices: 1021479--1021557 Score: 57
Period size: 5 Copynumber: 17.2 Consensus size: 5
1021469 AATAAAAAAT
*
1021479 ATATA ATATA AT-T- ATATA ATATA A-A-A ATA-A ATAAA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
* * *
1021524 ATAAA AAAT- TTATAA ATATA ATATA A-AT- ATATA A
1 ATATA ATATA ATAT-A ATATA ATATA ATATA ATATA A
1021558 ATATTTTATT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
3 5 0.08
4 14 0.24
5 37 0.63
6 3 0.05
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (5 bp):
ATATA
Found at i:1021496 original size:13 final size:13
Alignment explanation
Indices: 1021478--1021502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1021468 TAATAAAAAA
1021478 TATATAATATAAT
1 TATATAATATAAT
1021491 TATATAATATAA
1 TATATAATATAA
1021503 AAATAAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TATATAATATAAT
Done.